Citrus Sinensis ID: 006212
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 656 | 2.2.26 [Sep-21-2011] | |||||||
| O04130 | 624 | D-3-phosphoglycerate dehy | yes | no | 0.937 | 0.985 | 0.728 | 0.0 | |
| Q58424 | 524 | D-3-phosphoglycerate dehy | yes | no | 0.789 | 0.988 | 0.419 | 1e-109 | |
| P73821 | 554 | D-3-phosphoglycerate dehy | N/A | no | 0.794 | 0.940 | 0.381 | 9e-99 | |
| O29445 | 527 | D-3-phosphoglycerate dehy | yes | no | 0.788 | 0.981 | 0.392 | 4e-98 | |
| P35136 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.785 | 0.980 | 0.380 | 1e-96 | |
| O27051 | 525 | D-3-phosphoglycerate dehy | yes | no | 0.792 | 0.990 | 0.364 | 3e-96 | |
| O08651 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.588 | 0.724 | 0.429 | 2e-81 | |
| Q5EAD2 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.586 | 0.722 | 0.430 | 4e-81 | |
| Q61753 | 533 | D-3-phosphoglycerate dehy | yes | no | 0.588 | 0.724 | 0.422 | 7e-81 | |
| Q60HD7 | 533 | D-3-phosphoglycerate dehy | N/A | no | 0.588 | 0.724 | 0.424 | 1e-80 |
| >sp|O04130|SERA_ARATH D-3-phosphoglycerate dehydrogenase, chloroplastic OS=Arabidopsis thaliana GN=At1g17745 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/638 (72%), Positives = 535/638 (83%), Gaps = 23/638 (3%)
Query: 3 ASSSSSSSIKPI---FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFT 59
A SSS SS+K + +T+ S S +S + L +FLH Y T T
Sbjct: 2 AFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHR---------------RYATSVKLT 46
Query: 60 -ISNSLQTALETSELHVSKFQ----DDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVE 114
IS +L+T +T+ ++F D PKP ILV+EKLGEAG+ +LR FG+V+
Sbjct: 47 AISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVD 106
Query: 115 CLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATE 174
C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE
Sbjct: 107 CSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATE 166
Query: 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAV 234
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADASIKAGKW RSKYVGVSLVGKTLAV
Sbjct: 167 HGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAV 226
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
MGFGKVG+EVARRAKGLGM VI+HDPYAPAD+ARA+GV+LVSFDQA++TADF+SLHMPL
Sbjct: 227 MGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLT 286
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T K+FNDETF+KMKKGVR++NVARGGVIDE+ALVRALD+G+VAQAALDVF EEPP+KD
Sbjct: 287 PATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKD 346
Query: 355 SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL 414
S+L+QHENVTVTPHLGASTKEAQEGVAIEIAEAV GAL+GELSATA+NAPMV EVLSEL
Sbjct: 347 SRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEVLSEL 406
Query: 415 APYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISAS 474
PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S
Sbjct: 407 TPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDS 466
Query: 475 FINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIE 534
++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIE
Sbjct: 467 YVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIE 526
Query: 535 GKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT 594
GKVK+G+PHLT VGSFGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMSVGRT
Sbjct: 527 GKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRT 586
Query: 595 FRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
R IMAIGVDEEP+ +L+ IG V AIEE+ L +
Sbjct: 587 VLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
|
Arabidopsis thaliana (taxid: 3702) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 9EC: 5 |
| >sp|Q58424|SERA_METJA D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust.
Identities = 228/543 (41%), Positives = 333/543 (61%), Gaps = 25/543 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
ILV++ L E + IL G VE L+ E L EKI D L+VRSGTKVTR V E A
Sbjct: 4 ILVTDPLHEDAIKILEEVGEVEVATGLTKEELLEKIKDADVLVVRSGTKVTRDVIEKAE- 62
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KLKV+GRAGVG+DN+D++AATE G +VVNAP A++++ AE + L+ + ARN+ QA AS+
Sbjct: 63 KLKVIGRAGVGVDNIDVEAATEKGIIVVNAPDASSISVAELTMGLMLAAARNIPQATASL 122
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G+W R ++ G+ L GKTL V+G G++G +V +RAK GMN+I +DPY P + A ++GV
Sbjct: 123 KRGEWDRKRFKGIELYGKTLGVIGLGRIGQQVVKRAKAFGMNIIGYDPYIPKEVAESMGV 182
Query: 273 ELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
ELV ++ ADFI+LH+PL P T I E A MKK IVN ARGG+IDE+AL
Sbjct: 183 ELVDDINELCKRADFITLHVPLTPKTRHIIGREQIALMKKNAIIVNCARGGLIDEKALYE 242
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL G + AALDVF EEPP KD+ L+ +NV TPH GAST+EAQ+ +AE +
Sbjct: 243 ALKEGKIRAAALDVFEEEPP-KDNPLLTLDNVIGTPHQGASTEEAQKAAGTIVAEQIKKV 301
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS--AR 449
LRGEL+ +N P +P E L +L PY++LA+ LG + +Q++ G + V+LIY A+
Sbjct: 302 LRGELAENVVNMPNIPQEKLGKLKPYMLLAEMLGNIVMQVLDG--SVNRVELIYSGELAK 359
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
+ DL I RA + KG++ PI + INLVNA AK + + + E + +S E ++
Sbjct: 360 EKTDL---IKRAFL-KGLLSPILLAGINLVNAPIIAKNRNINVVE----SSTSEEKYGNA 411
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I++ + KF SI G + P + V + V EG L + + +D+P
Sbjct: 412 IKITAESDKKKF----------SIVGAIINNKPVILEVDGYEVSFIPEGVLAIIKHIDRP 461
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629
G IG+V LG++ +N+ M VGR +M + +D ++ +++I ++P I++ +
Sbjct: 462 GTIGRVCITLGDYGINIASMQVGRKEPGGESVMLLNLDHTVPEEVIEKIKEIPNIKDVAV 521
Query: 630 LHV 632
+++
Sbjct: 522 INL 524
|
Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P73821|SERA_SYNY3 D-3-phosphoglycerate dehydrogenase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 361 bits (927), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 209/548 (38%), Positives = 326/548 (59%), Gaps = 27/548 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+ + + G+ IL+ V+ LS + + + + DA+++RS TKVT + +A +
Sbjct: 32 VLVSDSIDQVGIDILKQVAQVDVKTGLSEAEIIDIVPEYDAIMLRSATKVTEKIIQAGS- 90
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK++GRAGVG+DN+D+ AAT G +VVN+P NT+AAAEH +A++ ++AR++ A+ S+
Sbjct: 91 QLKIIGRAGVGVDNIDVPAATRQGIVVVNSPEGNTIAAAEHALAMMMALARHIPDANKSV 150
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K KW R +++G + KTL V+G GK+GS VA AK +GM ++A+DP+ ++A +G
Sbjct: 151 KESKWERKQFIGTEVYKKTLGVVGLGKIGSHVAGVAKAMGMKLLAYDPFISQERADQIGC 210
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
LV D + ADFI+LH+P P T+ + N ET AKMK RI+N +RGG+IDEEALV A
Sbjct: 211 TLVDLDLLFSEADFITLHIPKTPETANLINAETLAKMKPTARIINCSRGGIIDEEALVTA 270
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
+++ + AALDVF +EP +S+L + NV +TPHLGAST+EAQ VA+++AE + L
Sbjct: 271 IETAQIGGAALDVFAQEPLG-ESRLREFSNVILTPHLGASTEEAQVNVAVDVAEQIRDVL 329
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
G + +A+N P + +V+ +L PY+ LA+ LG L QL G +V L A +
Sbjct: 330 LGLPARSAVNIPGLTPDVMEKLRPYLKLAETLGTLVGQLAGGRIDRLTVCLQGDLA---E 386
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
+++ L KG++ +N VNA AK++G+R+ E + D+S S+ +
Sbjct: 387 YTNSQPLVVAAIKGLLSQALRERVNYVNAAIEAKERGIRVIETK---DASVRDYSGSLHL 443
Query: 513 QLSNVDSKFAA--AVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPG 570
+ + + +A A+ NGEI I T V F ++ ++ D PG
Sbjct: 444 KATGTMGEHSATGALLSNGEIRI-----------TDVDEFPINVPPNNYMLFTLHRDMPG 492
Query: 571 MIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630
+IGK+G++LG NVN+ M VGR R IMA+ +D+ L EI KV I +
Sbjct: 493 IIGKIGSLLGSFNVNIASMQVGRKIVRGDAIMALSLDDPLPDGLLSEITKVAGIRD---- 548
Query: 631 HVSYSVRL 638
+Y+V+L
Sbjct: 549 --AYTVKL 554
|
Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O29445|SERA_ARCFU D-3-phosphoglycerate dehydrogenase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 359 bits (921), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 215/548 (39%), Positives = 333/548 (60%), Gaps = 31/548 (5%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+LV+E + E + +R G VE +S E L ++ + +A++VRS TKV V +AA
Sbjct: 3 VLVAEPISEEAIDYMRKNGLEVEVKTGMSREELIREVPKYEAIVVRSQTKVDAEVIQAAK 62
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++GRAGVG+DN+D+ AAT+ G +VVNAP NT++ AEH IAL+ + AR + QAD S
Sbjct: 63 -NLKIIGRAGVGVDNIDINAATQRGIVVVNAPGGNTISTAEHAIALMLAAARKIPQADRS 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G+ L GKT V+G G+VG EVA+R K L MNV+A+DP+ ++A +G
Sbjct: 122 VKEGKWERKKFMGIELRGKTAGVIGLGRVGFEVAKRCKALEMNVLAYDPFVSKERAEQIG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+LV FD LA++D I++H+P T + F KMK GV +VN ARGG++DE AL
Sbjct: 182 VKLVDFDTLLASSDVITVHVPRTKETIGLIGKGQFEKMKDGVIVVNAARGGIVDEAALYE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
A+ +G VA AALDV+ +EPP+ D+ L++ +NV TPH+ AST+EAQ V + IAE +V
Sbjct: 242 AIKAGKVAAAALDVYEKEPPSPDNPLLKLDNVVTTPHIAASTREAQLNVGMIIAEDIVNM 301
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLA-VQLVSGGSGIKSVKLIY--RSA 448
+G A+N P + + P++ LA+K+G++A V+L G I+ VK+ + A
Sbjct: 302 AKGLPVRNAVNLPSIEPSDFEFMMPFLTLAEKMGKIASVRL---GGAIRKVKVTCSGKLA 358
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ TR L KG+ EPI ++ INLV+A A ++G+ I E +V +
Sbjct: 359 TKNTEFVTRAL----LKGLFEPILSNEINLVSAKPVAVERGITIEESKV----------E 404
Query: 509 SIQVQLSNVDSKFAAAVSENG-EISIEGKVKFGIPH-LTRVGSFGVDASLEGNLILCRQV 566
S++ + +S V NG E+ + G FG + + ++ + V+ +G+ I+
Sbjct: 405 SVE----HYESLLEVWVESNGKEMYLAGTC-FGNEYRILKIDVYNVNFVPKGHYIISLHE 459
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI--MAIGVDEEPNQDSLKEIGKVPAI 624
D+PG+IG+VG + G +N+N+ M VGR+ + GI M + VD+ P + L+E+ K+ I
Sbjct: 460 DKPGVIGRVGTLFGRNNINIAGMIVGRSGDKPGGIQLMLLLVDDPPTPEVLEEMTKLDGI 519
Query: 625 EEYTLLHV 632
+ T + +
Sbjct: 520 IDATYVEL 527
|
Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) (taxid: 224325) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|P35136|SERA_BACSU D-3-phosphoglycerate dehydrogenase OS=Bacillus subtilis (strain 168) GN=serA PE=3 SV=3 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 206/542 (38%), Positives = 314/542 (57%), Gaps = 27/542 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+K+ GL L +E + +A E + DAL+VRS TKVT +F
Sbjct: 4 VLVSDKMSNDGLQPLIESDFIEIVQKNVADAEDE-LHTFDALLVRSATKVTEDLFNKMTS 62
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK+VGRAGVG+DN+D+ AT+ G +V+NAP NT++ AEH A+++S+ R++ QA+ S+
Sbjct: 63 -LKIVGRAGVGVDNIDIDEATKHGVIVINAPNGNTISTAEHTFAMISSLMRHIPQANISV 121
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K+ +W R+ YVG L GKTL ++G G++GSE+A+RA+ GM V DP+ ++A+ +GV
Sbjct: 122 KSREWNRTAYVGSELYGKTLGIVGLGRIGSEIAQRARAFGMTVHVFDPFLTEERAKKIGV 181
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+F++ L +AD I++H PL T + N ET AK KKGVR++N ARGG+IDE AL+ A
Sbjct: 182 NSRTFEEVLESADIITVHTPLTKETKGLLNKETIAKTKKGVRLINCARGGIIDEAALLEA 241
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
L++G VA AALDVF EPP D+KLV H V TPHLGASTKEAQ VA +++E V+
Sbjct: 242 LENGHVAGAALDVFEVEPPV-DNKLVDHPLVIATPHLGASTKEAQLNVAAQVSEEVLQFA 300
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
+G +AIN P + + +++ PY +A K+G L Q + ++ V + Y
Sbjct: 301 KGLPVMSAINLPAMTKDEFAKIKPYHQIAGKIGSLVSQCMK--EPVQDVAIQYEGT--IA 356
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
L+T + + G ++P S +N VNA AK++G+ SE+ ++S + + I V
Sbjct: 357 KLETSFITKALLSGFLKPRVDSTVNEVNAGGVAKERGISFSEKISSSESGYD---NCISV 413
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPH----LTRVGSFGVDASLEGNLILCRQVDQ 568
+++ S F + IPH + + F +D G+L+ + D
Sbjct: 414 KVTGDRSTFTVTATY-------------IPHFGERIVEINGFNIDFYPTGHLVYIQHQDT 460
Query: 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYT 628
G+IG+VG ILG++++N+ M VGR + IM + D +KE+ VP I
Sbjct: 461 TGVIGRVGRILGDNDINIATMQVGRKEKGGEAIMMLSFDRHLEDKIVKELTNVPDIVSVK 520
Query: 629 LL 630
L+
Sbjct: 521 LI 522
|
Bacillus subtilis (strain 168) (taxid: 224308) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O27051|SERA_METTH D-3-phosphoglycerate dehydrogenase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=serA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 353 bits (905), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 197/540 (36%), Positives = 315/540 (58%), Gaps = 20/540 (3%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ + E G++ L V ++PE L + I DA++VRS TKVTR V EAA
Sbjct: 6 VLIADSINEKGISELEEVAEVVVNTTITPEELLDAIKDFDAIVVRSRTKVTREVIEAAP- 64
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK++ RAGVG+DNVD++AAT+ G +V+NAP + ++ AEH I L+ ++AR ++ AD S+
Sbjct: 65 RLKIIARAGVGVDNVDVKAATDRGIMVINAPESTSITVAEHSIGLMLALARKIAIADRSV 124
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K GKW +++++G+ L GKTL ++G G++GS+V R K GM+++ +DPY + A +GV
Sbjct: 125 KEGKWEKNRFMGIELNGKTLGIIGMGRIGSQVVVRTKAFGMDIMVYDPYISKEAAEEMGV 184
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ + L +D +++H+PL P T + +++ F MK IVN ARGG+IDE+AL RA
Sbjct: 185 TVTDLETLLRESDIVTIHVPLTPETRHLISEDEFKLMKDTAFIVNCARGGIIDEDALYRA 244
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
L G +A AALDVF EEPP + S L++ ENV +TPH+GAST EAQ AI +A +
Sbjct: 245 LKDGEIAGAALDVFEEEPP-EGSPLLELENVVLTPHIGASTSEAQRDAAIIVANEIKTVF 303
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
+G +N P++ SE L PY+ LA+K+G + Q + G I+ + + Y +
Sbjct: 304 QGGAPRNVLNMPVMDSETYKSLKPYIELAEKMGAIIAQALPG--NIEKLDVTY--CGELA 359
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
++ IL + + I+ PI +NL+NA AK++G+ ++E R S SI +
Sbjct: 360 EMQFDILTRTMLQAILNPILTEPVNLINAPSIAKKRGIMVTEAR----RSESDGYRSIII 415
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMI 572
A A S+ G S+E P + + + VD EG +I+ R D PG I
Sbjct: 416 ---------ATAESDRGGFSVEA-THIKEPTIIGINGYRVDVKPEGTMIIARYRDLPGTI 465
Query: 573 GKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
G +G LG+H +N+ M VGR +M + VD+ + ++E+ K+ +++ + +
Sbjct: 466 GAIGTKLGQHGINIATMQVGRKEIGGEAVMVLKVDQSVPAEVIEEVKKLDNVDDAVAIEI 525
|
Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|O08651|SERA_RAT D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 304 bits (778), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 177/412 (42%), Positives = 243/412 (58%), Gaps = 26/412 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE +L +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ +NA + S P++ LA+ LG L +Q+V+ G+ +K+
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMHAWAGSPKGTIQVVTQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
T + A+I + E + +NLVNA K+ GL ++
Sbjct: 367 -------------GTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q5EAD2|SERA_BOVIN D-3-phosphoglycerate dehydrogenase OS=Bos taurus GN=PHGDH PE=2 SV=3 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 178/413 (43%), Positives = 243/413 (58%), Gaps = 28/413 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT + AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTSDIINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAAAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GK L ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKVLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + +Q DFI++H PL P+T+ + ND TFA+ KKGV +VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEQIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVCVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVNHENVISCPHLGASTKEAQSRCGEEIALQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ A +NA + S P+V LAK LG L A+Q+V+ GS +K+
Sbjct: 307 VKGKALAGVVNAQALASIFCPHTKPWVSLAKALGALMQAWAGSPKGAIQVVTQGSSLKN- 365
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPIS-ASFINLVNADFTAKQKGLRIS 493
L + G+++ S S +NLVNA K+ GL ++
Sbjct: 366 -------------SGSCLAPAVIIGLLKDASQQSNVNLVNAMLLVKEAGLDVT 405
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q61753|SERA_MOUSE D-3-phosphoglycerate dehydrogenase OS=Mus musculus GN=Phgdh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 302 bits (773), Expect = 7e-81, Method: Compositional matrix adjust.
Identities = 174/412 (42%), Positives = 243/412 (58%), Gaps = 26/412 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ +NA + S P++ LA+ +G L +Q+V+ G+ +K+
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKGTIQVVTQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
T + A+I + E + +NLVNA K+ GL ++
Sbjct: 367 -------------GTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
| >sp|Q60HD7|SERA_MACFA D-3-phosphoglycerate dehydrogenase OS=Macaca fascicularis GN=PHGDH PE=2 SV=4 | Back alignment and function description |
|---|
Score = 301 bits (771), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 175/412 (42%), Positives = 244/412 (59%), Gaps = 26/412 (6%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ EIA V
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRL----------AVQLVSGGSGIKSV 441
++G+ A +NA + S P++ LA+ LG L +Q+++ G+ +K+
Sbjct: 307 VKGKSLAGVVNAQALTSAFSPHTKPWIGLAEALGTLMRAWAGSPKGTIQVITQGTSLKNA 366
Query: 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ P A+I + E + +NLVNA K+ GL ++
Sbjct: 367 G----NCLSP---------AVIVGLLKEASKQADVNLVNAKLLVKEAGLDVT 405
|
Macaca fascicularis (taxid: 9541) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 9 EC: 5 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 656 | ||||||
| 224100535 | 637 | predicted protein [Populus trichocarpa] | 0.958 | 0.987 | 0.782 | 0.0 | |
| 224113315 | 633 | predicted protein [Populus trichocarpa] | 0.946 | 0.981 | 0.777 | 0.0 | |
| 357467711 | 630 | Phosphoglycerate dehydrogenase [Medicago | 0.948 | 0.987 | 0.766 | 0.0 | |
| 356521735 | 623 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.940 | 0.990 | 0.768 | 0.0 | |
| 356526328 | 621 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.943 | 0.996 | 0.763 | 0.0 | |
| 225443272 | 624 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.827 | 0.870 | 0.856 | 0.0 | |
| 449461667 | 631 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.957 | 0.995 | 0.762 | 0.0 | |
| 255568067 | 633 | d-3-phosphoglycerate dehydrogenase, puta | 0.952 | 0.987 | 0.742 | 0.0 | |
| 449533397 | 594 | PREDICTED: d-3-phosphoglycerate dehydrog | 0.876 | 0.968 | 0.803 | 0.0 | |
| 18394525 | 624 | D-3-phosphoglycerate dehydrogenase [Arab | 0.937 | 0.985 | 0.728 | 0.0 |
| >gi|224100535|ref|XP_002311914.1| predicted protein [Populus trichocarpa] gi|222851734|gb|EEE89281.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 988 bits (2555), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 501/640 (78%), Positives = 560/640 (87%), Gaps = 11/640 (1%)
Query: 1 MAASSSSSSSIKPIFTT-RSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNY-----TT 54
MA+SS+ S P TT S S S++SSLLSFL NT P PISLK S +++ ++
Sbjct: 1 MASSSTKPISTPPFTTTISSSSQPSTRSSLLSFLRNTTPTPISLKLSHSRNSFLNSHSSS 60
Query: 55 PPSFTISNSLQT--ALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGN 112
S +I N+ +T + ETS + QD + KPTILVSEKLGEAGL +LRSFG+
Sbjct: 61 SRSLSIKNATKTIESAETSRVSKVGGQD---ADSQETKPTILVSEKLGEAGLELLRSFGD 117
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAA 172
V+C YDLS E LC+KI+ CDALIVRSGTKVTR VFEAA GKLKVVGRAGVGIDNVDLQAA
Sbjct: 118 VDCSYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAA 177
Query: 173 TEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTL 232
TEFGCLVVNAP ANTVAAAEHGIALLA+MARNV+QADAS+KAG+W R+KYVGVSLVGKTL
Sbjct: 178 TEFGCLVVNAPTANTVAAAEHGIALLAAMARNVAQADASMKAGQWQRNKYVGVSLVGKTL 237
Query: 233 AVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMP 292
AVMGFGKVGSEVARRAKGLGM VIAHDPYAPAD+ARA+GVELVSFDQA++TADFISLHMP
Sbjct: 238 AVMGFGKVGSEVARRAKGLGMQVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMP 297
Query: 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352
L P+T K+FND+TFAK+K GVRI+NVARGGVIDE+ALVRALDSG VAQAALDVFTEEPP
Sbjct: 298 LTPSTEKVFNDDTFAKVKTGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFTEEPPP 357
Query: 353 KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLS 412
KDSKLVQHE VTVTPHLGASTKEAQEGVAIEIAEAVVGAL+GEL+ATA+NAPMVP+EVLS
Sbjct: 358 KDSKLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALQGELAATAVNAPMVPAEVLS 417
Query: 413 ELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPIS 472
ELAPYVVLA+KLGRLAVQLV+GGSGIKS K++YRS+RDPDDLDTR+LRAMITKGIIEPIS
Sbjct: 418 ELAPYVVLAEKLGRLAVQLVAGGSGIKSAKVVYRSSRDPDDLDTRLLRAMITKGIIEPIS 477
Query: 473 ASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEIS 532
SFINLVNADFTAKQKGLRISEERVV D+SPEFPI SIQVQLSNVDSKF + VSE G+IS
Sbjct: 478 DSFINLVNADFTAKQKGLRISEERVVVDTSPEFPIHSIQVQLSNVDSKFGSGVSEGGDIS 537
Query: 533 IEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVG 592
IEG+VK+G PHLTRVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVG
Sbjct: 538 IEGRVKYGKPHLTRVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVG 597
Query: 593 RTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
RT +R IMAIGVDEEPNQ++LK+IG+VPAIEE+ L +
Sbjct: 598 RTVQRRKAIMAIGVDEEPNQETLKKIGEVPAIEEFVFLKL 637
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224113315|ref|XP_002316453.1| predicted protein [Populus trichocarpa] gi|222865493|gb|EEF02624.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 977 bits (2525), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 495/637 (77%), Positives = 555/637 (87%), Gaps = 16/637 (2%)
Query: 7 SSSSIKPIFTTRSKSSNSSKSS---------LLSFLHNTKPKPISLKFSSHNSNYTTPPS 57
+SS+ KPIFT S + SS SS LLSFL NT PISLK S + ++ S
Sbjct: 2 ASSTTKPIFTPPSTTLTSSSSSSSQPPTRSSLLSFLRNTASTPISLKLSHSHPSFR---S 58
Query: 58 FTISNSLQT--ALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
+I N+ +T + ETS + +D +N Q KPTILVSEKLGEAGL +LR+FG+V+C
Sbjct: 59 LSIRNATKTIESAETSPVSKVGGKDTINSQET--KPTILVSEKLGEAGLELLRNFGDVDC 116
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLS E LC+KI+ CDALIVRSGTKVTR VFEAA GKLKVVGRAGVGIDNVDLQAATEF
Sbjct: 117 SYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAATEF 176
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADAS+KAG+W R+KYVGVSLVGKTLAVM
Sbjct: 177 GCLVVNAPTANTVAAAEHGIALLASMARNVAQADASMKAGQWQRNKYVGVSLVGKTLAVM 236
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVGSEVARRAKGLGM V+ HDPYAPAD+ARA+GVE+VSFDQA++TADFISLHMPL P
Sbjct: 237 GFGKVGSEVARRAKGLGMEVVTHDPYAPADRARAIGVEVVSFDQAISTADFISLHMPLTP 296
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
T K+FND++FAK+KKGVRI+NVARGGVIDEEALVRALDSG VAQAALDVFTEEPP KDS
Sbjct: 297 ATKKVFNDDSFAKVKKGVRIINVARGGVIDEEALVRALDSGKVAQAALDVFTEEPPPKDS 356
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQHE VTVTPHLGASTKEAQEGVAIEIAEAVVGAL+GEL+ATA+NAPMVP+EVLSELA
Sbjct: 357 KLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALKGELAATAVNAPMVPAEVLSELA 416
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYVVLA++LGRLAVQLV+GGSG+KS K++Y+SARDPDDLDTR+LRAMITKGIIEPIS SF
Sbjct: 417 PYVVLAERLGRLAVQLVAGGSGMKSAKVVYKSARDPDDLDTRLLRAMITKGIIEPISDSF 476
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
INLVNADFTAK+KGLRISEERVV D+SPE P+ SIQVQLSNVDSKF +AVS G+ISIEG
Sbjct: 477 INLVNADFTAKKKGLRISEERVVVDASPELPVFSIQVQLSNVDSKFGSAVSGGGDISIEG 536
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
KVK GIPHLT+VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT
Sbjct: 537 KVKNGIPHLTQVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGRTA 596
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
RR + IMAIGVDEEPN +SLK+IG+VPAIEE+ L +
Sbjct: 597 RRRNAIMAIGVDEEPNLESLKKIGEVPAIEEFVFLKL 633
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357467711|ref|XP_003604140.1| Phosphoglycerate dehydrogenase [Medicago truncatula] gi|355505195|gb|AES86337.1| Phosphoglycerate dehydrogenase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2484), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 488/637 (76%), Positives = 549/637 (86%), Gaps = 15/637 (2%)
Query: 3 ASSSSSSSI--KPIFTTRSKSSNSSKSSL---LSFLHNTKPK--PISLKFSSHNSNYTTP 55
+SSS + SI PIF++ S +S+ +KSS LSFL++ P ++K S NS
Sbjct: 2 SSSSCTKSILPSPIFSSSSSTSSETKSSKSSNLSFLNSNTFGIIPNNIKLSHANSQQRC- 60
Query: 56 PSFTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
F +++ L+T +T + + +D N KPTILVSEKLGEAGL +LR GNVEC
Sbjct: 61 --FMVNSVLKTVDQTKQTNNVVSVNDEN-----EKPTILVSEKLGEAGLQVLRQLGNVEC 113
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLSPE LC+KIS CDALIVRSGTKVTR VFEA GKLKVVGRAGVGIDNVDLQAATEF
Sbjct: 114 AYDLSPEDLCKKISSCDALIVRSGTKVTRKVFEAGKGKLKVVGRAGVGIDNVDLQAATEF 173
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANT+AAAEHGIALLA+MARNVSQADAS+KAGKWLRSKYVGVS+VGKTLA+M
Sbjct: 174 GCLVVNAPTANTIAAAEHGIALLAAMARNVSQADASLKAGKWLRSKYVGVSMVGKTLAIM 233
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVGSEVARRAKGLGMNVIAHDPYAPAD+ARAVGVELVSFDQA+ TADFISLHMPL P
Sbjct: 234 GFGKVGSEVARRAKGLGMNVIAHDPYAPADRARAVGVELVSFDQAITTADFISLHMPLTP 293
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
TT+K+FND TFAKMK GVRI+NVARGGVIDE+ALV+ALDSG+VAQAALDVFTEEPPAKDS
Sbjct: 294 TTNKVFNDNTFAKMKNGVRIINVARGGVIDEDALVKALDSGIVAQAALDVFTEEPPAKDS 353
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQHENV TPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMV EVLSELA
Sbjct: 354 KLVQHENVIATPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVAPEVLSELA 413
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYVVLA+KLGRLAVQLVSGGSGI+SVK++YRSAR PDDLDTR+LRAMITKGIIEPIS +
Sbjct: 414 PYVVLAEKLGRLAVQLVSGGSGIQSVKVVYRSARGPDDLDTRLLRAMITKGIIEPISNTI 473
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
+NLVNAD+ AKQKGLRISEERVV DSSPE P++SIQ+Q+SNV+SKFA+AVSE G+ISI+G
Sbjct: 474 VNLVNADYIAKQKGLRISEERVVVDSSPELPVESIQIQISNVESKFASAVSETGQISIDG 533
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
KVK+G PHLT VGSF VD SLEGNLILCRQ+DQPGMIG VGNILGE NVNV+FMSVGRT
Sbjct: 534 KVKYGTPHLTCVGSFAVDVSLEGNLILCRQIDQPGMIGTVGNILGEKNVNVSFMSVGRTS 593
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
RR +MAIGVDEEPN+++L+ IG VPAIEE+ L +
Sbjct: 594 RRKKALMAIGVDEEPNKEALENIGAVPAIEEFVFLKL 630
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356521735|ref|XP_003529507.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 961 bits (2483), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 486/632 (76%), Positives = 544/632 (86%), Gaps = 15/632 (2%)
Query: 6 SSSSSIKPIFTTRSKSSNSSKSSLLSFLH--NTKPKPISLKFS--SHNSNYTTPPSFTIS 61
+SS+ KPIF + + SKS L +H T PKPI + SH S S ++
Sbjct: 2 ASSACTKPIFPS---AFTVSKSKLSRHVHVSFTSPKPIYYHYRKLSHASQR----SLVVN 54
Query: 62 NSLQTALET-SELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLS 120
+ L+T T + L S +D V ++ KPTILVSEKLGEAGL +LR G+VEC Y+LS
Sbjct: 55 SVLKTVDPTQTSLRRSNSED---VGSLGEKPTILVSEKLGEAGLQVLRGVGHVECAYELS 111
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV 180
E LC KIS CDALIVRSGTKVTR VFEA G+LKVVGRAGVGIDNVDLQAATEFGCLVV
Sbjct: 112 QEELCTKISCCDALIVRSGTKVTREVFEAGKGRLKVVGRAGVGIDNVDLQAATEFGCLVV 171
Query: 181 NAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKV 240
NAP ANT+AAAEHGIALLA+MARNV+QADAS KAGKW RSKYVGVS+VGKTLAVMGFGKV
Sbjct: 172 NAPTANTIAAAEHGIALLAAMARNVAQADASTKAGKWQRSKYVGVSMVGKTLAVMGFGKV 231
Query: 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300
GSEVARRAKGLGM+VIAHDPYAPAD+ARA+GV+LVSFD A+ATADFISLHMPL PTT+KI
Sbjct: 232 GSEVARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDHAIATADFISLHMPLTPTTNKI 291
Query: 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH 360
FND TFAKMKKGVRIVNVARGGVIDE+ALVRALD+G+VAQAALDVFTEEPP+KDSKLVQH
Sbjct: 292 FNDNTFAKMKKGVRIVNVARGGVIDEDALVRALDTGIVAQAALDVFTEEPPSKDSKLVQH 351
Query: 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVL 420
ENVTVTPHLGASTKEAQEGVAIEIAEAV+GAL+GELSATA+NAPMV EVLSELAPYVVL
Sbjct: 352 ENVTVTPHLGASTKEAQEGVAIEIAEAVLGALKGELSATAVNAPMVAPEVLSELAPYVVL 411
Query: 421 AKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480
A+KLGRLAVQLV GGSGIKSVK++YRSAR PDDLDTR+LRAM+TKG+IEPIS + +NLVN
Sbjct: 412 AEKLGRLAVQLVCGGSGIKSVKIVYRSARGPDDLDTRLLRAMVTKGLIEPISNTIVNLVN 471
Query: 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFG 540
ADF AKQKGLRISEERVV DSSPE P+DSIQVQ+S+VDSKFA+AVSE+G+ISI+G+VKFG
Sbjct: 472 ADFIAKQKGLRISEERVVVDSSPEMPVDSIQVQISSVDSKFASAVSESGQISIDGRVKFG 531
Query: 541 IPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHG 600
PHLT VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT RRN
Sbjct: 532 EPHLTCVGSFDVDVSLEGNLILCRQVDQPGMIGRVGNILGEQNVNVSFMSVGRTSRRNKA 591
Query: 601 IMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
IMAIGVDEEPN+++L IG VPAIEE+ L +
Sbjct: 592 IMAIGVDEEPNKEALDNIGAVPAIEEFVFLKL 623
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356526328|ref|XP_003531770.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 956 bits (2471), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 480/629 (76%), Positives = 537/629 (85%), Gaps = 10/629 (1%)
Query: 5 SSSSSSIKPI-FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFTISNS 63
+SS + KPI F + S S +SF++ T PI K S S ++N
Sbjct: 2 ASSRACTKPIIFLSAFTKSKFSHQYHVSFINTTSHIPIYPKLSQQRS-------LVVNNV 54
Query: 64 LQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEA 123
L+T T S ++ ++ KPTILVSE+LGEAGL +LR G+VEC Y+LS E
Sbjct: 55 LKTVEPTESSLRSSNSEEFG--SLGEKPTILVSERLGEAGLQVLRGVGHVECAYELSQEE 112
Query: 124 LCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAP 183
LC KIS CDALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATEFGCLVVNAP
Sbjct: 113 LCTKISCCDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAP 172
Query: 184 IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243
ANT+AAAEHGIALLA+MARNV+QADAS KAGKW RSKYVGVS+VGKTLAVMGFGKVGSE
Sbjct: 173 TANTIAAAEHGIALLAAMARNVAQADASTKAGKWQRSKYVGVSMVGKTLAVMGFGKVGSE 232
Query: 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303
VARRAKGLGM+VIAHDPYAPAD+ARA+GV+LVSFDQA+ TADFISLHMPL PTT+KIFND
Sbjct: 233 VARRAKGLGMHVIAHDPYAPADRARAIGVDLVSFDQAITTADFISLHMPLTPTTNKIFND 292
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
TFAKMKKGVRIVNVARGGVIDE+ALVRALDSG+VAQAALDVFTEEPP+KDSKLVQHENV
Sbjct: 293 NTFAKMKKGVRIVNVARGGVIDEDALVRALDSGIVAQAALDVFTEEPPSKDSKLVQHENV 352
Query: 364 TVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKK 423
TVTPHLGASTKEAQEGVAIEIAEAV+GAL+GELSATA+NAPMV EVLSELAPYVVLA+K
Sbjct: 353 TVTPHLGASTKEAQEGVAIEIAEAVLGALKGELSATAVNAPMVAPEVLSELAPYVVLAEK 412
Query: 424 LGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483
LGRLAVQLV GGSGIKSVK++YRSAR PDDLDTR+LRAM+TKG+IEPIS + +NLVNADF
Sbjct: 413 LGRLAVQLVCGGSGIKSVKVVYRSARGPDDLDTRLLRAMVTKGLIEPISNTIVNLVNADF 472
Query: 484 TAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPH 543
AKQKGLRISEERVV DSSPE P+DSIQVQ+S+VDSKFA+AVSE+G+ISI+G+VKFG PH
Sbjct: 473 IAKQKGLRISEERVVVDSSPELPVDSIQVQISSVDSKFASAVSESGQISIDGRVKFGEPH 532
Query: 544 LTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA 603
LT VGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE NVNV+FMSVGRT RRN IMA
Sbjct: 533 LTCVGSFDVDVSLEGNLILCRQVDQPGMIGRVGNILGEQNVNVSFMSVGRTSRRNKAIMA 592
Query: 604 IGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
IGVDEEPN+++L IG V AIEE+ L +
Sbjct: 593 IGVDEEPNKEALDNIGAVSAIEEFVFLKL 621
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443272|ref|XP_002273552.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 952 bits (2462), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/543 (85%), Positives = 508/543 (93%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILVSEKLGEAGL +LR FG VEC YDLS E LC+KIS CDALIVRSGTKVTR+VFEA
Sbjct: 82 KPTILVSEKLGEAGLEVLREFGEVECSYDLSQEDLCKKISLCDALIVRSGTKVTRAVFEA 141
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A G+LKVVGRAGVGIDNVDLQAATEFGCLVVNAP ANT+AAAEHGIALLA+MARNV+QAD
Sbjct: 142 AKGRLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTIAAAEHGIALLAAMARNVAQAD 201
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
AS+KAGKW R+KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM+VIAHDPYAPAD+ARA
Sbjct: 202 ASMKAGKWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMHVIAHDPYAPADRARA 261
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
GV+LVSFD A++TADFISLHMPL PTT KIFNDETFAK+KKGVRI+NVARGGVIDE+AL
Sbjct: 262 AGVDLVSFDLAISTADFISLHMPLTPTTKKIFNDETFAKVKKGVRIINVARGGVIDEDAL 321
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
VRALDSG VAQAALDVFTEEPP KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV
Sbjct: 322 VRALDSGAVAQAALDVFTEEPPPKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 381
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
GALRGELSATA+NAPMVP EV+SEL+PYVVLA+KLGRLAVQLV+GGSGIKSVK++Y++AR
Sbjct: 382 GALRGELSATAVNAPMVPPEVISELSPYVVLAEKLGRLAVQLVAGGSGIKSVKVVYKTAR 441
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
DPDDLDTR+LRAM+TKGIIEPIS+SFINLVNADFTAKQKGLRISEERV DSSPE P++S
Sbjct: 442 DPDDLDTRLLRAMVTKGIIEPISSSFINLVNADFTAKQKGLRISEERVSIDSSPENPVES 501
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
IQVQ+SNVDSKFA+AVSEN ISIEGKVK GIP LT VGSF VD SLEGNLILCRQVDQP
Sbjct: 502 IQVQISNVDSKFASAVSENEYISIEGKVKDGIPRLTCVGSFSVDVSLEGNLILCRQVDQP 561
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629
GMIG+VGNILGE NVNV+FMSVGRT +R IMAIGVDEEP++D+LK+IG+VPAIEE+
Sbjct: 562 GMIGRVGNILGECNVNVSFMSVGRTVKRTRAIMAIGVDEEPDKDTLKKIGEVPAIEEFVF 621
Query: 630 LHV 632
L +
Sbjct: 622 LKL 624
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461667|ref|XP_004148563.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 950 bits (2455), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 484/635 (76%), Positives = 548/635 (86%), Gaps = 7/635 (1%)
Query: 1 MAASSSSSSSIKPIFTTRSKSSNSSKSSLLSFLHNT---KPKPISLKFSSHNSNYTTPPS 57
MA+SSS+S P FT+ ++S +S K LLSF ++ P+P L S +S+ + S
Sbjct: 1 MASSSSNSLFSSPHFTSFNRSFHS-KPPLLSFSTSSVSLNPRP--LHSFSSSSSSSNRCS 57
Query: 58 FTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECLY 117
F S+ LE+S VS+ D L+ + + TILV+EKLGEAGL +LRSFGNV C Y
Sbjct: 58 FIPLRSVLKTLESSAF-VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCAY 116
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
DLSPE LC KIS CDALIVRSGTKV R VFEAA G+LKVVGRAGVGIDNVDLQAATEFGC
Sbjct: 117 DLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFGC 176
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
LVVNAP ANT+AAAEHGIALL SMARNV+QADAS+KAGKW R+KYVGVSLVGKTLAVMGF
Sbjct: 177 LVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWERNKYVGVSLVGKTLAVMGF 236
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297
GKVGSEVARRAKGLGM VIAHDPYAP D+ARA+GVELVSF+QA++TADFISLHMPL PTT
Sbjct: 237 GKVGSEVARRAKGLGMQVIAHDPYAPVDRARAIGVELVSFNQAISTADFISLHMPLTPTT 296
Query: 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL 357
SK+FND+TF MKKG R++NVARGGVIDE+ALVRALDSG VAQAALDVF EEPP KDSKL
Sbjct: 297 SKVFNDDTFGLMKKGARLINVARGGVIDEDALVRALDSGAVAQAALDVFVEEPPPKDSKL 356
Query: 358 VQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPY 417
VQH+NVTVTPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMVP EVLSELAPY
Sbjct: 357 VQHKNVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAPY 416
Query: 418 VVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN 477
VVLA+KLGRLAVQLV+GGSGIKSVK++YRS R PDDLDTR+LRAMITKGIIEPIS S IN
Sbjct: 417 VVLAEKLGRLAVQLVAGGSGIKSVKVVYRSGRAPDDLDTRLLRAMITKGIIEPISDSHIN 476
Query: 478 LVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKV 537
LVNADFTAKQKGLRISEERV+ D+ PEFP++SIQ+ +S V+SKFA+AV+E GE+ IEGKV
Sbjct: 477 LVNADFTAKQKGLRISEERVLVDAPPEFPVESIQIVVSEVESKFASAVTEKGEVVIEGKV 536
Query: 538 KFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR 597
K+G+PHL RVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE+NVNVNFMSVGRT RR
Sbjct: 537 KYGVPHLRRVGSFDVDVSLEGNLILCRQVDQPGMIGQVGNILGENNVNVNFMSVGRTLRR 596
Query: 598 NHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
IMAIG+DEEPN+D+LK+IG+VPAIEE+ L++
Sbjct: 597 KRAIMAIGMDEEPNKDTLKKIGQVPAIEEFVFLNL 631
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568067|ref|XP_002525010.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] gi|223535718|gb|EEF37382.1| d-3-phosphoglycerate dehydrogenase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 946 bits (2444), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 473/637 (74%), Positives = 549/637 (86%), Gaps = 12/637 (1%)
Query: 3 ASSSSSSSIKPIFTTRSKSSNSSKSS---LLSFLHN--TKPKPISLKFS-SHNSNYTTPP 56
ASSS++S + P T S ++SS S L+ F HN T PISLK S NS+ ++
Sbjct: 2 ASSSANSILTPSLITPSSQASSSSQSRSFLVPFSHNNFTSSTPISLKVSLGRNSSLSS-- 59
Query: 57 SFTISNSLQTALET-SELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVEC 115
+ N++ TA+E+ + + S+ + + P PTILVSEKLG+AGL +LR +GN+EC
Sbjct: 60 ---VKNAISTAVESATPVSSSEKIKKEDFRETKPTPTILVSEKLGDAGLKLLREYGNLEC 116
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
YDLS E LC+KI+ CDALIVRSGTKV+R VFEAA G+LKVVGRAGVGIDNVDL AATEF
Sbjct: 117 CYDLSKEDLCKKIASCDALIVRSGTKVSREVFEAAKGRLKVVGRAGVGIDNVDLGAATEF 176
Query: 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVM 235
GCLVVNAP ANTVAAAEHGIALLA+M+RNV+QADAS+KAG+W R+KYVGVS+VGKTLAVM
Sbjct: 177 GCLVVNAPTANTVAAAEHGIALLAAMSRNVAQADASMKAGEWQRNKYVGVSIVGKTLAVM 236
Query: 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295
GFGKVG+EVARRAKGLGMNVIAHDPYAPAD+ARA+GVELVSFDQA+A+ADF+SLHMPL P
Sbjct: 237 GFGKVGTEVARRAKGLGMNVIAHDPYAPADRARAIGVELVSFDQAIASADFVSLHMPLTP 296
Query: 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355
T IFND+TF+KMK GVRI+NVARGGVIDE+ALVRALDSG VAQAALDVF+EEPP++D
Sbjct: 297 ATQNIFNDDTFSKMKNGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFSEEPPSRDG 356
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
KLVQH+NVT TPHLGASTKEAQEGVAIEIAEAV+GAL GELSATA+NAPMVP+EVLSELA
Sbjct: 357 KLVQHKNVTATPHLGASTKEAQEGVAIEIAEAVIGALEGELSATAVNAPMVPAEVLSELA 416
Query: 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASF 475
PYV+LA+KLGRLAVQLV+GGSGIKSVK++Y+SARDPDDLDTR+LRAMITKGIIEPIS S
Sbjct: 417 PYVILAEKLGRLAVQLVAGGSGIKSVKVLYKSARDPDDLDTRLLRAMITKGIIEPISTSI 476
Query: 476 INLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEG 535
INLVNADF AK+KGLRI EER + D+SPE P+ S+QVQ+SNVDSKFA+AVS+ G+ISIEG
Sbjct: 477 INLVNADFIAKEKGLRIREEREMVDTSPESPVHSLQVQISNVDSKFASAVSDTGDISIEG 536
Query: 536 KVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595
+VK+GIPHLTRVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGEHNVNV+FMSVGRT
Sbjct: 537 RVKYGIPHLTRVGSFAVDVSLEGNLILCRQVDQPGMIGRVGNILGEHNVNVSFMSVGRTV 596
Query: 596 RRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
RRN IMAIGVDEEP +L +IG+V AIEE+ L +
Sbjct: 597 RRNQAIMAIGVDEEPQGQALVKIGEVSAIEEFVFLKL 633
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449533397|ref|XP_004173662.1| PREDICTED: d-3-phosphoglycerate dehydrogenase, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 944 bits (2441), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 463/576 (80%), Positives = 515/576 (89%), Gaps = 1/576 (0%)
Query: 57 SFTISNSLQTALETSELHVSKFQDDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVECL 116
SF S+ LE+S VS+ D L+ + + TILV+EKLGEAGL +LRSFGNV C
Sbjct: 20 SFIPLRSVLKTLESSAF-VSQNSDLLDPTSPNDRSTILVAEKLGEAGLELLRSFGNVVCA 78
Query: 117 YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176
YDLSPE LC KIS CDALIVRSGTKV R VFEAA G+LKVVGRAGVGIDNVDLQAATEFG
Sbjct: 79 YDLSPEELCAKISSCDALIVRSGTKVNRQVFEAAKGRLKVVGRAGVGIDNVDLQAATEFG 138
Query: 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMG 236
CLVVNAP ANT+AAAEHGIALL SMARNV+QADAS+KAGKW R+KYVGVSLVGKTLAVMG
Sbjct: 139 CLVVNAPTANTIAAAEHGIALLTSMARNVAQADASMKAGKWERNKYVGVSLVGKTLAVMG 198
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
FGKVGSEVARRAKGLGM VIAHDPYAP D+ARA+GVELVSF+QA++TADFISLHMPL PT
Sbjct: 199 FGKVGSEVARRAKGLGMQVIAHDPYAPVDRARAIGVELVSFNQAISTADFISLHMPLTPT 258
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSK 356
TSK+FND+TF MKKG R++NVARGGVIDE+ALVRALDSG VAQAALDVF EEPP KDSK
Sbjct: 259 TSKVFNDDTFGLMKKGARLINVARGGVIDEDALVRALDSGAVAQAALDVFVEEPPPKDSK 318
Query: 357 LVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAP 416
LVQH+NVTVTPHLGASTKEAQEGVAIEIAEAVVGAL GELSATA+NAPMVP EVLSELAP
Sbjct: 319 LVQHKNVTVTPHLGASTKEAQEGVAIEIAEAVVGALNGELSATAVNAPMVPPEVLSELAP 378
Query: 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI 476
YVVLA+KLGRLAVQLV+GGSGIKSVK++YRS R PDDLDTR+LRAMITKGIIEPIS S I
Sbjct: 379 YVVLAEKLGRLAVQLVAGGSGIKSVKVVYRSGRAPDDLDTRLLRAMITKGIIEPISDSHI 438
Query: 477 NLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGK 536
NLVNADFTAKQKGLRISEERV+ D+ PEFP++SIQ+ +S V+SKFA+AV+E GE+ IEGK
Sbjct: 439 NLVNADFTAKQKGLRISEERVLVDAPPEFPVESIQIVVSEVESKFASAVTEKGEVVIEGK 498
Query: 537 VKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR 596
VK+G+PHL RVGSF VD SLEGNLILCRQVDQPGMIG+VGNILGE+NVNVNFMSVGRT R
Sbjct: 499 VKYGVPHLRRVGSFDVDVSLEGNLILCRQVDQPGMIGQVGNILGENNVNVNFMSVGRTLR 558
Query: 597 RNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
R IMAIG+DEEPN+D+LK+IG+VPAIEE+ L++
Sbjct: 559 RKRAIMAIGMDEEPNKDTLKKIGQVPAIEEFVFLNL 594
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Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|18394525|ref|NP_564034.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|3122858|sp|O04130.2|SERA_ARATH RecName: Full=D-3-phosphoglycerate dehydrogenase, chloroplastic; Short=3-PGDH; Flags: Precursor gi|9802747|gb|AAF99816.1|AC034257_8 D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|2189964|dbj|BAA20405.1| Phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|2804258|dbj|BAA24440.1| phosphoglycerate dehydrogenase [Arabidopsis thaliana] gi|15215740|gb|AAK91415.1| At1g17740/F11A6_16 [Arabidopsis thaliana] gi|20466083|gb|AAM19963.1| At1g17740/F11A6_16 [Arabidopsis thaliana] gi|21554130|gb|AAM63210.1| Phosphoglycerate dehydrogenase-like protein [Arabidopsis thaliana] gi|332191509|gb|AEE29630.1| D-3-phosphoglycerate dehydrogenase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 927 bits (2397), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/638 (72%), Positives = 535/638 (83%), Gaps = 23/638 (3%)
Query: 3 ASSSSSSSIKPI---FTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFT 59
A SSS SS+K + +T+ S S +S + L +FLH Y T T
Sbjct: 2 AFSSSCSSVKAVNSRWTSPSPSPSSRFAVLPAFLHR---------------RYATSVKLT 46
Query: 60 -ISNSLQTALETSELHVSKFQ----DDLNVQAVTPKPTILVSEKLGEAGLAILRSFGNVE 114
IS +L+T +T+ ++F D PKP ILV+EKLGEAG+ +LR FG+V+
Sbjct: 47 AISAALKTVEQTTLTEDNRFSTVGSDSDEYNPTLPKPRILVTEKLGEAGVNLLREFGDVD 106
Query: 115 CLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATE 174
C YDLSPE L +K+++ DALIVRSGTKVTR VFEAA G+LKVVGRAGVGIDNVDLQAATE
Sbjct: 107 CSYDLSPEDLKKKVAESDALIVRSGTKVTREVFEAAKGRLKVVGRAGVGIDNVDLQAATE 166
Query: 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAV 234
GCLVVNAP ANTVAAAEHGIALLASMARNV+QADASIKAGKW RSKYVGVSLVGKTLAV
Sbjct: 167 HGCLVVNAPTANTVAAAEHGIALLASMARNVAQADASIKAGKWERSKYVGVSLVGKTLAV 226
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
MGFGKVG+EVARRAKGLGM VI+HDPYAPAD+ARA+GV+LVSFDQA++TADF+SLHMPL
Sbjct: 227 MGFGKVGTEVARRAKGLGMTVISHDPYAPADRARALGVDLVSFDQAISTADFVSLHMPLT 286
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T K+FNDETF+KMKKGVR++NVARGGVIDE+ALVRALD+G+VAQAALDVF EEPP+KD
Sbjct: 287 PATKKVFNDETFSKMKKGVRLINVARGGVIDEDALVRALDAGIVAQAALDVFCEEPPSKD 346
Query: 355 SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL 414
S+L+QHENVTVTPHLGASTKEAQEGVAIEIAEAV GAL+GELSATA+NAPMV EVLSEL
Sbjct: 347 SRLIQHENVTVTPHLGASTKEAQEGVAIEIAEAVAGALKGELSATAVNAPMVAPEVLSEL 406
Query: 415 APYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISAS 474
PY+VLA+KLGRLAVQL SGG G++S++++YRSARD DDLDTR+LRAMITKGIIEPIS S
Sbjct: 407 TPYIVLAEKLGRLAVQLASGGKGVQSIRVVYRSARDRDDLDTRLLRAMITKGIIEPISDS 466
Query: 475 FINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIE 534
++NLVNADF AKQKGLRISEER+V DSSPE+P+DSIQVQ+ NV+S FA AVS+ G+ISIE
Sbjct: 467 YVNLVNADFIAKQKGLRISEERMVVDSSPEYPVDSIQVQILNVESNFAGAVSDAGDISIE 526
Query: 535 GKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT 594
GKVK+G+PHLT VGSFGVD SLEGNLILCRQVDQPGMIG+VGNILGE NVNVNFMSVGRT
Sbjct: 527 GKVKYGVPHLTCVGSFGVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVNFMSVGRT 586
Query: 595 FRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
R IMAIGVDEEP+ +L+ IG V AIEE+ L +
Sbjct: 587 VLRKQAIMAIGVDEEPDNKTLERIGGVSAIEEFVFLKL 624
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Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 656 | ||||||
| TAIR|locus:2124266 | 603 | EDA9 "embryo sac development a | 0.824 | 0.897 | 0.746 | 4.6e-215 | |
| TAIR|locus:2090649 | 588 | AT3G19480 [Arabidopsis thalian | 0.824 | 0.920 | 0.722 | 1.2e-207 | |
| TIGR_CMR|DET_0599 | 526 | DET_0599 "D-3-phosphoglycerate | 0.797 | 0.994 | 0.361 | 7.5e-89 | |
| TIGR_CMR|CHY_2698 | 525 | CHY_2698 "D-3-phosphoglycerate | 0.657 | 0.820 | 0.407 | 1.5e-83 | |
| TIGR_CMR|GSU_1198 | 542 | GSU_1198 "D-3-phosphoglycerate | 0.772 | 0.935 | 0.353 | 6e-80 | |
| TIGR_CMR|SPO_3355 | 531 | SPO_3355 "D-3-phosphoglycerate | 0.663 | 0.819 | 0.402 | 1.7e-75 | |
| UNIPROTKB|E1C7Y3 | 525 | PHGDH "Uncharacterized protein | 0.650 | 0.813 | 0.393 | 6.5e-74 | |
| RGD|61987 | 533 | Phgdh "phosphoglycerate dehydr | 0.603 | 0.742 | 0.415 | 3.6e-73 | |
| MGI|MGI:1355330 | 533 | Phgdh "3-phosphoglycerate dehy | 0.603 | 0.742 | 0.407 | 1.2e-72 | |
| UNIPROTKB|O43175 | 533 | PHGDH "D-3-phosphoglycerate de | 0.603 | 0.742 | 0.412 | 2e-72 |
| TAIR|locus:2124266 EDA9 "embryo sac development arrest 9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2078 (736.6 bits), Expect = 4.6e-215, P = 4.6e-215
Identities = 404/541 (74%), Positives = 474/541 (87%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILV+EKLG+AG+ +L NV+C Y+++PE L KIS CDALIVRSGTKV R VFE+
Sbjct: 61 KPTILVAEKLGDAGIKLLEDVANVDCSYNMTPEELNIKISLCDALIVRSGTKVGREVFES 120
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
++G+LKVVGRAGVGIDNVDL AATEFGCLVVNAP ANT+AAAEHGIAL+A+MARNV+QAD
Sbjct: 121 SHGRLKVVGRAGVGIDNVDLSAATEFGCLVVNAPTANTIAAAEHGIALMAAMARNVAQAD 180
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
AS+KAG+W R+KYVGVSLVGKTLAV+GFGKVG+EVARRAKGLGM VIAHDPYAPAD+A A
Sbjct: 181 ASVKAGEWKRNKYVGVSLVGKTLAVLGFGKVGTEVARRAKGLGMRVIAHDPYAPADRAHA 240
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+GV+LVSFD+ALATADFISLHMPL PTTSKI NDETFAKMKKGVRIVNVARGGVIDE+AL
Sbjct: 241 IGVDLVSFDEALATADFISLHMPLTPTTSKILNDETFAKMKKGVRIVNVARGGVIDEDAL 300
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXX 389
VRALD+G+VAQAALDVFT+EPPAKDSKLVQHE VTVTPHLGAST
Sbjct: 301 VRALDAGIVAQAALDVFTKEPPAKDSKLVQHERVTVTPHLGASTMEAQEGVAIEIAEAVV 360
Query: 390 XXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
L GEL+ATA+NAPMV +EVL+EL PYVVLA+KLGRLAVQLV+GGSG+K+ K+ Y SAR
Sbjct: 361 GALNGELAATAVNAPMVSAEVLTELKPYVVLAEKLGRLAVQLVAGGSGVKNAKITYASAR 420
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
DDLDTR+LRAMITKGIIEPIS ++NLVNADFTAKQ+GLR+SEERV+ D SPE P+++
Sbjct: 421 ATDDLDTRLLRAMITKGIIEPISDVYVNLVNADFTAKQRGLRLSEERVLLDGSPESPLET 480
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I VQLSNV+SKFA+++SE+GE+ +EGKVK G+PHLT+VGSF VD +LEG++ILCRQVDQP
Sbjct: 481 ITVQLSNVESKFASSLSESGEVKVEGKVKDGVPHLTKVGSFEVDVTLEGSIILCRQVDQP 540
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629
GMIG VG+ILGE NVNVNFMSVGR R IMAIGVD+ P++++LK+IG++PA+EE+
Sbjct: 541 GMIGTVGSILGESNVNVNFMSVGRIAPRKQAIMAIGVDDIPSKETLKKIGEIPAVEEFVF 600
Query: 630 L 630
L
Sbjct: 601 L 601
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| TAIR|locus:2090649 AT3G19480 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2008 (711.9 bits), Expect = 1.2e-207, P = 1.2e-207
Identities = 391/541 (72%), Positives = 464/541 (85%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
KPTILV+EKLG+AG+ +L+ + NV+C YDLS E LC KIS CDALIVRSGTKV R VFE+
Sbjct: 46 KPTILVTEKLGQAGIDLLKKYANVDCSYDLSLEELCTKISLCDALIVRSGTKVGRDVFES 105
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
+ G+LKVVGRAGVGIDNVDL AATE+GCLVVNAP ANTVAAAEHGIALL +MARN++QAD
Sbjct: 106 SRGRLKVVGRAGVGIDNVDLAAATEYGCLVVNAPTANTVAAAEHGIALLTAMARNIAQAD 165
Query: 210 ASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARA 269
ASIKAGKW R+KYVGVSLVGKTLAV+GFGKVGSEVARRA+GLGM+VI HDPYAPAD+ARA
Sbjct: 166 ASIKAGKWTRNKYVGVSLVGKTLAVLGFGKVGSEVARRARGLGMHVITHDPYAPADRARA 225
Query: 270 VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
+GVELVSF+ A++TADFISLH+PL TSK+ ND TFA MKKGVRIVNVARGGVIDEEAL
Sbjct: 226 IGVELVSFEVAISTADFISLHLPLTAATSKMMNDVTFAMMKKGVRIVNVARGGVIDEEAL 285
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXX 389
+RALDSG+VAQAALDVFT EPP KD+KLV HE+VT TPHLGAST
Sbjct: 286 LRALDSGIVAQAALDVFTVEPPVKDNKLVLHESVTATPHLGASTMEAQEGVSIEVAEAVI 345
Query: 390 XXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
LRGEL+ATA+NAPMVP EVL EL PYVVLA+KLGRLAVQLV+GGSG+ +VK+ Y S+R
Sbjct: 346 GALRGELAATAVNAPMVPLEVLRELKPYVVLAEKLGRLAVQLVTGGSGVNAVKVTYASSR 405
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
PDDLDTR+LRAM+ KGIIEPIS+ FINLVN+D+ AKQ+G++ISEER+V D SPE PI+
Sbjct: 406 APDDLDTRLLRAMVIKGIIEPISSVFINLVNSDYIAKQRGVKISEERMVLDGSPENPIEY 465
Query: 510 IQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQP 569
I V+++NV+S+FA+A+SE+GEI +EG+VK G+P LT+VG FGVD SLEG++ILCRQVDQP
Sbjct: 466 ITVRIANVESRFASALSESGEIKVEGRVKQGVPSLTKVGLFGVDVSLEGSVILCRQVDQP 525
Query: 570 GMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629
GMIGKV +ILG+ NVNV+FMSVGR +MAIGVDE+P++++LK+IG +PAIEE+
Sbjct: 526 GMIGKVASILGDENVNVSFMSVGRIAPGKQAVMAIGVDEQPSKETLKKIGDIPAIEEFVF 585
Query: 630 L 630
L
Sbjct: 586 L 586
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| TIGR_CMR|DET_0599 DET_0599 "D-3-phosphoglycerate dehydrogenase" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 887 (317.3 bits), Expect = 7.5e-89, P = 7.5e-89
Identities = 195/540 (36%), Positives = 311/540 (57%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+LVS+ L GL+ L+ V+ L PE L I + DAL+VRS T+VT + A
Sbjct: 4 VLVSDALSATGLSPLKEIAQVDVKTGLKPEELVSIIGEYDALLVRSQTQVTADIINAGK- 62
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
KL+V+GRAGVG+DN+DL+AAT G +VVNAP NT++A EH +AL+ SMAR++ +A+AS+
Sbjct: 63 KLQVIGRAGVGVDNIDLKAATGNGIIVVNAPTGNTISATEHTLALMLSMARHIPRANASL 122
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K+G+W R+++VG L GKTL ++G G +GSE+A+RA L M VI +DP+ ++A+ + V
Sbjct: 123 KSGQWKRNEFVGSELKGKTLGIVGLGNIGSEIAKRALALEMRVIGYDPFISMERAKKLQV 182
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
ELV F+ L ADFI+LH+P+ T + + MK VR++N +RGG+IDEEAL A
Sbjct: 183 ELVPFEDLLKQADFITLHVPMTGQTKGLIGPKELEMMKPTVRLINTSRGGIIDEEALAAA 242
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXXL 392
+ + AA+DVF++EP +S L + +N+ VTPHLGAST
Sbjct: 243 IREKRIGGAAIDVFSKEP-CTESCLFECDNIIVTPHLGASTAEAQELATSDVVKQVIDVF 301
Query: 393 RGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPD 452
G + A+NAP + +E L + P++ +A+ +G L QL G +K+V + Y +
Sbjct: 302 EGRPARYAVNAPYISAESLPVVGPFMPVARTVGSLVSQLTDGH--MKNVTIKY--CGELA 357
Query: 453 DLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQV 512
DT L+A++ GI+E IS +N+VNAD A Q+GL ++E++ A + I ++ +
Sbjct: 358 AYDTTALKALVLGGILEHISEERVNVVNADIVAAQRGLGVTEQKESACQNFSSLI-TVTI 416
Query: 513 QLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMI 572
N S A G++ I + I + G F + +D+PG+I
Sbjct: 417 DTDNGKSNTVAGSLVRGDVHIVRLNDYWIDIVPTGGYF----------LFADHIDRPGLI 466
Query: 573 GKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632
G G I G+ ++N+++M + R R +M + +DE + +++ +P ++ ++ +
Sbjct: 467 GAAGKITGDADINISYMHLSRQKARGQALMILALDEPLPEKQRQQLLSLPDVQTVQVVKI 526
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| TIGR_CMR|CHY_2698 CHY_2698 "D-3-phosphoglycerate dehydrogenase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 837 (299.7 bits), Expect = 1.5e-83, P = 1.5e-83
Identities = 179/439 (40%), Positives = 267/439 (60%)
Query: 93 ILVSEKLGEAGLAILRSFGN-VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL S+ + E GL ILR G V+ LS E L + I Q DALIVRS TKVT + EAA
Sbjct: 3 ILASDPIAEKGLNILREEGFIVDEKTKLSEEELIKIIPQYDALIVRSETKVTARIIEAAE 62
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++GRAGVG+DN+DL AA++ G +VVN+P NT+AAAEH AL+ ++ RN+ QA A+
Sbjct: 63 N-LKIIGRAGVGVDNIDLAAASKKGIIVVNSPEGNTIAAAEHTFALMMALLRNIPQAHAA 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKWLR ++ G L GKT+ ++G G++G+ VA+R K VI +DP+ ++A+ +G
Sbjct: 122 LKEGKWLRKEFTGYELRGKTVGIIGLGRIGTAVAKRVKAFETRVIGYDPFISEERAQMLG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ L+S ++ L +D +++H+PLN T + N E MKK I+N ARGG+IDEEAL
Sbjct: 182 ITLMSLEELLQNSDIVTMHLPLNNETRNLINRERLKLMKKSAFIINCARGGIIDEEALYE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL +G +A AALDVF++EP +S L + NV VTPHLGASTK
Sbjct: 242 ALKAGEIAGAALDVFSKEP-LTESPLFELPNVIVTPHLGASTKEAQINVAIDVAREIASV 300
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
L+G L+ A+N P + E L PY+ LA+KLG Q++SGG + + +++Y +
Sbjct: 301 LKGGLAQNAVNFPAMDKESYQRLKPYINLAEKLGNFLAQILSGG--LLAAEIVYNGSAFK 358
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQ 511
++ TR L KG+++P+ +N VNA AK++G+++ E V+ + + + +++
Sbjct: 359 EE--TRPLTLAALKGLLDPLLMERVNYVNAPVVAKERGIKV-RETVMENGADYTNLITLK 415
Query: 512 VQLSNVDSKFAAAVSENGE 530
V + A + N E
Sbjct: 416 VTTEKGERIIAGTLFRNNE 434
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| TIGR_CMR|GSU_1198 GSU_1198 "D-3-phosphoglycerate dehydrogenase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 803 (287.7 bits), Expect = 6.0e-80, P = 6.0e-80
Identities = 188/532 (35%), Positives = 288/532 (54%)
Query: 93 ILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
I+V++++ + GLA+L VE L E L I D +I RSGT V R + +A
Sbjct: 3 IIVTDEVAQEGLALLAQDPRVELDVKLGLKKEELLAIIGDYDVIITRSGTTVNRELLDAG 62
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
KL++V RAGVGIDNVD+ A+ G +VVNAP NT +AAEH +ALL S RNV++A+
Sbjct: 63 K-KLRLVARAGVGIDNVDVDYASSRGVIVVNAPFGNTNSAAEHAMALLLSFCRNVTRANG 121
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S+K+G+W R+ + G L GKT V+G GKVG VA R K +V+A DPY +A +
Sbjct: 122 SLKSGEWKRAPFTGYELKGKTAGVIGLGKVGGRVATRLKAFECDVLACDPYIAVKRAHDL 181
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
GV+LVS D+ D I++H PL T + + A MK GV IVN ARGG+I+E AL+
Sbjct: 182 GVKLVSHDEIYKNCDIITVHTPLTDETRNMIGERELAMMKDGVIIVNAARGGIIEEAALL 241
Query: 331 RALDSGVVAQAALDVFTEEPPAKD--SKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXX 388
+ L+SG VA AA+DVF+EEPP + KL+ HE V VTPHLGA+T
Sbjct: 242 KYLESGKVAGAAVDVFSEEPPKSEYLKKLIGHERVVVTPHLGANTFEAQVNVAVDVSREI 301
Query: 389 XXXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
L + A+N P ++ ++ P++ L L +QL+ K+++ +
Sbjct: 302 LNYLDDQPLENAVNIPRFDLALMDQMRPFLNLMNTLCEFGIQLLDANIS----KIVFGFS 357
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVV-ADSSPEFPI 507
D L I+ + +N+VNA A+ G+ + E + AD+
Sbjct: 358 GSIAHYDCTPLTVCGLASILNRMVDQDVNMVNASLIAEGMGIVVEESKTTHADA------ 411
Query: 508 DSIQVQLSNVDSKFAAAVSENGEI-SIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQV 566
SN+ + E G+ +I G + G+P + R+ + +D + E +++L
Sbjct: 412 ------FSNLIT--IVVEGEGGKRRTISGTLFEGLPRIVRLRDYSMDFAPEEHMLLLHYA 463
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618
D+PGMIGK+G I+G+H +N+ M++GR+ ++ ++ + +D L+E+
Sbjct: 464 DRPGMIGKIGTIMGQHEINIASMNLGRSEKKGEAMVILSLDSAVPPQVLEEV 515
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| TIGR_CMR|SPO_3355 SPO_3355 "D-3-phosphoglycerate dehydrogenase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 761 (272.9 bits), Expect = 1.7e-75, P = 1.7e-75
Identities = 182/452 (40%), Positives = 254/452 (56%)
Query: 91 PTILVSEKLGEAGLAILRSFG-NVECLYDLSPEA--LCEKISQCDALIVRSGTKVTRSVF 147
P +L+S+KL +A + I R G +V+ DL + L E I Q D L +RS TKVT +
Sbjct: 3 PKVLISDKLSDAAVQIFRDRGIDVDFQPDLGKDKDKLAEVIGQYDGLAIRSATKVTEKIL 62
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E A LKV+GRAG+G DNVD AA++ G +V+N P N + AEH IA++ ++AR + +
Sbjct: 63 ENATN-LKVIGRAGIGTDNVDKDAASKKGVIVMNTPFGNMITTAEHAIAMMFAVARQIPE 121
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267
A AS AGKW +SK++GV L KTL V+G G +G V RA+GL M VIA+DP+ +KA
Sbjct: 122 ASASTHAGKWEKSKFMGVELTNKTLGVIGAGNIGGIVCDRARGLKMKVIAYDPFLGEEKA 181
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+GVE V D L ADFI+LH+PL T I E AK KKGVRI+N ARGG++DEE
Sbjct: 182 NKMGVEKVELDDLLKRADFITLHVPLTDQTRNILGRENLAKTKKGVRIINCARGGLVDEE 241
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXX 387
AL L SG VA AA DVF+ EP AK++ L NV TPHLGA+T
Sbjct: 242 ALAEMLQSGHVAGAAFDVFSVEP-AKENPLFGLPNVVCTPHLGAATTEAQENVALQVAEQ 300
Query: 388 XXXXLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS 447
L A+N P V +E + P++ LA LG Q+ IK++ ++Y
Sbjct: 301 MSNYLLTGAVENALNMPSVTAEEAKVMGPWIALAGHLGSFVGQMTD--EPIKAINILYDG 358
Query: 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPI 507
+L L GI++ + +N+V+A AK++G++IS D S F
Sbjct: 359 TASTMNLAA--LNCATVAGIMKKANPE-VNMVSAPVVAKERGIQISTTN--QDKSGAF-- 411
Query: 508 DSIQVQLSNVDSKFAAAVSENGEISIEGKVKF 539
D V+++ V +K +V+ G + +GK +F
Sbjct: 412 DGY-VKVTVVTAKRERSVA--GTVFSDGKPRF 440
|
|
| UNIPROTKB|E1C7Y3 PHGDH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 746 (267.7 bits), Expect = 6.5e-74, P = 6.5e-74
Identities = 174/442 (39%), Positives = 246/442 (55%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
+L+S+ L IL++ G ++ L LS E L ++I CD LIVRS TKV+ V EAA
Sbjct: 9 VLISDSLDPCCRDILQA-GGIQVLEKPGLSKEELLQEIRDCDGLIVRSATKVSADVLEAA 67
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
G+L+VVGRAG G+DNVD+ AAT G LV+N P N+++AAE ++ +AR + QA A
Sbjct: 68 -GRLQVVGRAGTGVDNVDVDAATRKGVLVMNTPTGNSLSAAELTCGMILCLARQIPQAAA 126
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV 270
S+K GKW R KY+G+ L GKTL V+G G++G EVA R + GM I +DP + + A
Sbjct: 127 SMKEGKWDRKKYMGMELNGKTLGVLGLGRIGREVATRMQAFGMKTIGYDPIITPETSAAF 186
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
GVE + +Q DFI++H PL P+T+ + ND TFAK ++GV++VN ARGG++DE AL+
Sbjct: 187 GVEQLPLEQIWPRCDFITVHTPLLPSTTGLLNDSTFAKCRRGVQVVNCARGGIVDEGALL 246
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXX 390
RAL SG AALDVFT+EPP KD LV H NV PHLGAST+
Sbjct: 247 RALRSGQCGGAALDVFTQEPP-KDRDLVDHPNVICCPHLGASTREAQSRCGKEIAMQIVD 305
Query: 391 XLRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
G+ +N + + P++ LAK LG + L +G V + +D
Sbjct: 306 MATGKGLVGVVNGQALSKAFAPQTKPWIALAKALGTVLHGLAKQATGNVQVCTLGAPLKD 365
Query: 451 PDD-LDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDS 509
L ++ M+ +G E LVNA A++ GL+++ D+ PE P
Sbjct: 366 ASSYLAPAVVSGMLARGKKEA------TLVNAMLLAQEAGLKVTATH--GDTCPE-PEGL 416
Query: 510 IQVQLSNVDSKFAAAVSENGEI 531
+QV L + V + +
Sbjct: 417 LQVALQGTPHRVTGTVQGSSPV 438
|
|
| RGD|61987 Phgdh "phosphoglycerate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 167/402 (41%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 ILISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE +L +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGVLVMNTPNGNSLSAAELTCGMLMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVAARMQAFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ LG L G +++++ +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTLMHAWAGSPKG--TIQVVTQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ T + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
| MGI|MGI:1355330 Phgdh "3-phosphoglycerate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 164/402 (40%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM + +DP + A + G
Sbjct: 128 MKDGKWDRKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTVGYDPIISPEVAASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDSTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ +G L G +++++ +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEAMGTLMHAWAGSPKG--TIQVVTQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ T + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGTCLSPAVIVGLLREASKQADVNLVNAKLLVKEAGLNVT 405
|
|
| UNIPROTKB|O43175 PHGDH "D-3-phosphoglycerate dehydrogenase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 166/402 (41%), Positives = 234/402 (58%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+S+ L IL+ G V +LS E L ++ C+ LIVRS TKVT V AA
Sbjct: 9 VLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAAE 68
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++ +AR + QA AS
Sbjct: 69 -KLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATAS 127
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP + + + G
Sbjct: 128 MKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDPIISPEVSASFG 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN ARGG++DE AL+R
Sbjct: 188 VQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDEGALLR 247
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKXXXXXXXXXXXXXXXXX 391
AL SG A AALDVFTEEPP +D LV HENV PHLGASTK
Sbjct: 248 ALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDM 306
Query: 392 LRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451
++G+ +NA + S P++ LA+ LG L GS ++++I +
Sbjct: 307 VKGKSLTGVVNAQALTSAFSPHTKPWIGLAEALGTL--MRAWAGSPKGTIQVITQGT-SL 363
Query: 452 DDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS 493
+ + A+I + E + +NLVNA K+ GL ++
Sbjct: 364 KNAGNCLSPAVIVGLLKEASKQADVNLVNAKLLVKEAGLNVT 405
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| O04130 | SERA_ARATH | 1, ., 1, ., 1, ., 9, 5 | 0.7288 | 0.9375 | 0.9855 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 656 | |||
| PRK13581 | 526 | PRK13581, PRK13581, D-3-phosphoglycerate dehydroge | 0.0 | |
| TIGR01327 | 525 | TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas | 0.0 | |
| cd12173 | 304 | cd12173, PGDH_4, Phosphoglycerate dehydrogenases, | 1e-166 | |
| COG0111 | 324 | COG0111, SerA, Phosphoglycerate dehydrogenase and | 1e-117 | |
| cd05303 | 301 | cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P | 1e-116 | |
| cd12172 | 306 | cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat | 1e-112 | |
| pfam00389 | 312 | pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy | 1e-98 | |
| cd05198 | 302 | cd05198, formate_dh_like, Formate/glycerate and re | 2e-98 | |
| cd05301 | 309 | cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr | 1e-96 | |
| cd05299 | 312 | cd05299, CtBP_dh, C-terminal binding protein (CtBP | 4e-95 | |
| COG1052 | 324 | COG1052, LdhA, Lactate dehydrogenase and related d | 4e-92 | |
| cd12175 | 311 | cd12175, 2-Hacid_dh_11, Putative D-isomer specific | 8e-92 | |
| cd12171 | 310 | cd12171, 2-Hacid_dh_10, Putative D-isomer specific | 6e-87 | |
| cd12177 | 321 | cd12177, 2-Hacid_dh_12, Putative D-isomer specific | 1e-84 | |
| cd12178 | 317 | cd12178, 2-Hacid_dh_13, Putative D-isomer specific | 7e-83 | |
| cd12174 | 305 | cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat | 3e-81 | |
| pfam02826 | 175 | pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydro | 3e-79 | |
| cd12162 | 307 | cd12162, 2-Hacid_dh_4, Putative D-isomer specific | 2e-78 | |
| cd12176 | 304 | cd12176, PGDH_3, Phosphoglycerate dehydrogenases, | 6e-75 | |
| PRK13243 | 333 | PRK13243, PRK13243, glyoxylate reductase; Reviewed | 5e-73 | |
| cd12169 | 308 | cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat | 2e-72 | |
| cd12168 | 321 | cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l | 1e-71 | |
| cd01619 | 323 | cd01619, LDH_like, D-Lactate and related Dehydroge | 2e-70 | |
| PRK11790 | 409 | PRK11790, PRK11790, D-3-phosphoglycerate dehydroge | 3e-65 | |
| cd12167 | 330 | cd12167, 2-Hacid_dh_8, Putative D-isomer specific | 3e-65 | |
| cd12187 | 329 | cd12187, LDH_like_1, D-Lactate and related Dehydro | 2e-62 | |
| cd12179 | 306 | cd12179, 2-Hacid_dh_14, Putative D-isomer specific | 2e-61 | |
| cd12157 | 318 | cd12157, PTDH, Thermostable Phosphite Dehydrogenas | 9e-61 | |
| cd12183 | 328 | cd12183, LDH_like_2, D-Lactate and related Dehydro | 9e-59 | |
| cd12161 | 315 | cd12161, GDH_like_1, Putative glycerate dehydrogen | 1e-58 | |
| cd12186 | 329 | cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr | 2e-58 | |
| cd05300 | 313 | cd05300, 2-Hacid_dh_1, Putative D-isomer specific | 4e-58 | |
| cd12165 | 314 | cd12165, 2-Hacid_dh_6, Putative D-isomer specific | 6e-50 | |
| cd12156 | 301 | cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, | 7e-50 | |
| PRK06487 | 317 | PRK06487, PRK06487, glycerate dehydrogenase; Provi | 5e-49 | |
| PRK15409 | 323 | PRK15409, PRK15409, bifunctional glyoxylate/hydrox | 1e-47 | |
| PRK08410 | 311 | PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; P | 3e-47 | |
| PRK06932 | 314 | PRK06932, PRK06932, glycerate dehydrogenase; Provi | 3e-47 | |
| cd12158 | 343 | cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Deh | 2e-46 | |
| cd12185 | 322 | cd12185, HGDH_LDH_like, Putative Lactate dehydroge | 4e-45 | |
| cd12155 | 314 | cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2 | 2e-44 | |
| cd05302 | 348 | cd05302, FDH, NAD-dependent Formate Dehydrogenase | 2e-44 | |
| PLN02928 | 347 | PLN02928, PLN02928, oxidoreductase family protein | 2e-42 | |
| PRK07574 | 385 | PRK07574, PRK07574, formate dehydrogenase; Provisi | 2e-41 | |
| cd12184 | 330 | cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro | 2e-39 | |
| PLN02306 | 386 | PLN02306, PLN02306, hydroxypyruvate reductase | 3e-39 | |
| cd12164 | 306 | cd12164, GDH_like_2, Putative glycerate dehydrogen | 3e-37 | |
| cd12180 | 308 | cd12180, 2-Hacid_dh_15, Putative D-isomer specific | 1e-36 | |
| PRK00257 | 381 | PRK00257, PRK00257, erythronate-4-phosphate dehydr | 3e-34 | |
| PLN03139 | 386 | PLN03139, PLN03139, formate dehydrogenase; Provisi | 4e-32 | |
| PRK08605 | 332 | PRK08605, PRK08605, D-lactate dehydrogenase; Valid | 3e-31 | |
| cd12159 | 303 | cd12159, 2-Hacid_dh_2, Putative D-isomer specific | 3e-30 | |
| cd12166 | 300 | cd12166, 2-Hacid_dh_7, Putative D-isomer specific | 5e-30 | |
| PRK06436 | 303 | PRK06436, PRK06436, glycerate dehydrogenase; Provi | 7e-28 | |
| PRK12480 | 330 | PRK12480, PRK12480, D-lactate dehydrogenase; Provi | 8e-28 | |
| cd12163 | 334 | cd12163, 2-Hacid_dh_5, Putative D-isomer specific | 1e-25 | |
| cd12160 | 310 | cd12160, 2-Hacid_dh_3, Putative D-isomer specific | 1e-24 | |
| cd12154 | 310 | cd12154, FDH_GDH_like, Formate/glycerate dehydroge | 5e-21 | |
| cd04902 | 73 | cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory | 5e-21 | |
| PRK15438 | 378 | PRK15438, PRK15438, erythronate-4-phosphate dehydr | 3e-19 | |
| cd04879 | 71 | cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD include | 2e-18 | |
| PRK15469 | 312 | PRK15469, ghrA, bifunctional glyoxylate/hydroxypyr | 3e-16 | |
| cd04903 | 71 | cd04903, ACT_LSD, C-terminal ACT domain of the L-s | 3e-13 | |
| smart00997 | 162 | smart00997, AdoHcyase_NAD, S-adenosyl-L-homocystei | 4e-09 | |
| cd12170 | 294 | cd12170, 2-Hacid_dh_9, Putative D-isomer specific | 6e-08 | |
| PRK05476 | 425 | PRK05476, PRK05476, S-adenosyl-L-homocysteine hydr | 1e-06 | |
| COG0499 | 420 | COG0499, SAM1, S-adenosylhomocysteine hydrolase [C | 2e-06 | |
| cd02116 | 60 | cd02116, ACT, ACT domains are commonly involved in | 7e-06 | |
| cd00401 | 402 | cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, N | 1e-05 | |
| TIGR00936 | 407 | TIGR00936, ahcY, adenosylhomocysteinase | 2e-05 | |
| pfam01842 | 66 | pfam01842, ACT, ACT domain | 7e-05 | |
| cd05211 | 217 | cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding | 0.002 | |
| cd01076 | 227 | cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain | 0.002 |
| >gnl|CDD|237436 PRK13581, PRK13581, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 645 bits (1666), Expect = 0.0
Identities = 259/545 (47%), Positives = 345/545 (63%), Gaps = 24/545 (4%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
+LVS+ + AGL IL+ VE L E L E I DALIVRS TKVT V E
Sbjct: 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLE 60
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA LKV+GRAGVG+DNVD+ AAT G +VVNAP NT++AAEH IAL+ ++ARN+ QA
Sbjct: 61 AA-KNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQA 119
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
AS+KAGKW R K++GV L GKTL ++G G++GSEVA+RAK GM VIA+DPY ++A
Sbjct: 120 HASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYISPERAA 179
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+GVELVS D+ LA ADFI+LH PL P T + E AKMK GVRI+N ARGG+IDE A
Sbjct: 180 QLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L AL SG VA AALDVF +EPP DS L + NV VTPHLGAST EAQE VAI++AE V
Sbjct: 240 LAEALKSGKVAGAALDVFEKEPP-TDSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQV 298
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
+ ALRG A+N P + +E +L PY+ LA+KLG LA QL IKSV++ YR
Sbjct: 299 IDALRGGPVPNAVNLPSITAEEAEKLKPYLDLAEKLGSLAAQLA--DGPIKSVEITYRG- 355
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ + DT L A KG++ P+ +N VNA AK++G+ + E + ++ SP++ +
Sbjct: 356 -ELAEEDTEPLTAAALKGLLSPVLGERVNYVNAPLLAKERGIEVEESK--SEESPDYS-N 411
Query: 509 SIQVQLSNVDSKFAAAVSENGEISIEGKVKFG--IPHLTRVGSFGVDASLEGNLILCRQV 566
I V +++GE S+ G V FG P + + + VDA EG++++ R
Sbjct: 412 LITVT----------VTTDDGERSVAGTV-FGDGEPRIVEIDGYRVDAKPEGHMLIIRNR 460
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEE 626
D+PG+IGKVG +LGE +N+ M +GR +M + VD+ ++ L+E+ +P I
Sbjct: 461 DRPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILS 520
Query: 627 YTLLH 631
+
Sbjct: 521 AKAVE 525
|
Length = 526 |
| >gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Score = 527 bits (1360), Expect = 0.0
Identities = 238/542 (43%), Positives = 344/542 (63%), Gaps = 24/542 (4%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+L+++ + G+ IL G V+ LS E L E I DALIVRS TKVT V AA
Sbjct: 2 VLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAAP 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KLKV+GRAGVG+DN+D++AAT G LVVNAP NT++AAEH +A+L + ARN+ QADAS
Sbjct: 62 -KLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADAS 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K G+W R ++G L GKTL V+G G++GS VA+RAK GM V+A+DPY ++A +G
Sbjct: 121 LKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPYISPERAEQLG 180
Query: 272 VELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
VELV D+ LA ADFI++H PL P T + E AKMKKGV IVN ARGG+IDE AL
Sbjct: 181 VELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAALY 240
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVG 390
AL+ G V AALDVF +EPP D+ L +NV TPHLGAST+EAQE VA ++AE V+
Sbjct: 241 EALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLD 299
Query: 391 ALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450
AL+G A+NAP + ++V+ +L PY+ LA+KLG+LA QL+ G ++SV++ YR +
Sbjct: 300 ALKGLPVPNAVNAPGIDADVMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRG--E 355
Query: 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSI 510
++ L KG++ P+ +N+VNA AK++G+ + E + ++SSP++ + +
Sbjct: 356 LATENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERGITVEESK--SESSPDYK-NYL 412
Query: 511 QVQLSNVDSKFAAAVSENGEISIEGKVKFG--IPHLTRVGSFGVDASLEGNLILCRQVDQ 568
V ++ ++G +S+ G V FG P + + F VD EG +++ +D+
Sbjct: 413 SVTVTG----------DSGTVSVAGTV-FGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461
Query: 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYT 628
PG+IGKVG +LG +N+ M +GR + +M + +D+ + L+EI +P I
Sbjct: 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVF 521
Query: 629 LL 630
++
Sbjct: 522 VV 523
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525 |
| >gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 476 bits (1228), Expect = e-166
Identities = 175/304 (57%), Positives = 221/304 (72%), Gaps = 2/304 (0%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
+LV++ + E GL +LR G V+ LS E L I+ DALIVRS TKVT V EAA
Sbjct: 2 VLVTDPIDEEGLELLREAGIEVDVAPGLSEEELLAIIADADALIVRSATKVTAEVIEAA- 60
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
+LKV+GRAGVG+DN+D++AAT G LVVNAP ANT++ AEH IAL+ ++ARN+ QADAS
Sbjct: 61 PRLKVIGRAGVGVDNIDVEAATARGILVVNAPGANTISVAEHTIALMLALARNIPQADAS 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
++AGKW R K++GV L GKTL ++G G++G EVARRA+ GM V+A+DPY A++A A G
Sbjct: 121 LRAGKWDRKKFMGVELRGKTLGIVGLGRIGREVARRARAFGMKVLAYDPYISAERAAAGG 180
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
VELVS D+ LA ADFISLH PL P T + N E AKMK G ++N ARGG++DE AL
Sbjct: 181 VELVSLDELLAEADFISLHTPLTPETRGLINAEELAKMKPGAILINTARGGIVDEAALAD 240
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG +A AALDVF +EPP DS L+ NV +TPHLGAST+EAQE VA++ AE V+
Sbjct: 241 ALKSGKIAGAALDVFEQEPPPADSPLLGLPNVILTPHLGASTEEAQERVAVDAAEQVLAV 300
Query: 392 LRGE 395
L GE
Sbjct: 301 LAGE 304
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 351 bits (903), Expect = e-117
Identities = 155/327 (47%), Positives = 201/327 (61%), Gaps = 7/327 (2%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECL--YDLSPEALCEKISQCDALIVRSGTKVTRS 145
+LV++ L L L + +VE DL E L E ++ DALIV S T VT
Sbjct: 1 KMMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEE 59
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
V AA LK +GRAG G+DN+DL+AAT+ G LVVNAP N ++ AE +ALL ++AR +
Sbjct: 60 VLAAAP-NLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRI 118
Query: 206 SQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
ADAS + G+W R + G L GKT+ ++G G++G VA+R K GM VI +DPY+P +
Sbjct: 119 PDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYSPRE 178
Query: 266 KARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
+A GV V S D+ LA AD ++LH+PL P T + N E AKMK G ++N ARGGV+
Sbjct: 179 RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVV 238
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384
DE+AL+ ALDSG +A AALDVF EEP DS L NV +TPH+G ST EAQE VA +
Sbjct: 239 DEDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIV 298
Query: 385 AEAVVGALRGELSATAINAPMVPSEVL 411
AE +V L G NAP V E
Sbjct: 299 AENIVRYLAGG--PVVNNAPEVDLERG 323
|
Length = 324 |
| >gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 349 bits (897), Expect = e-116
Identities = 144/301 (47%), Positives = 203/301 (67%), Gaps = 3/301 (0%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+++ + E + L G V+ ++ E L EKI D LIVRS TKVT+ V +AA
Sbjct: 3 ILITDGIDEIAIEKLEEAGFEVDYEPLIAKEELLEKIKDYDVLIVRSRTKVTKEVIDAA- 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK++ RAGVG+DN+D++ A + G V+N P A++ + AE I L+ S+AR + +A+
Sbjct: 62 KNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRANRE 121
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
+K GKW + KY G+ L GKTL ++GFG++G EVA+ A+ LGMNVIA+DPY ++A +G
Sbjct: 122 MKLGKWNKKKYKGIELRGKTLGIIGFGRIGREVAKIARALGMNVIAYDPYPKDEQAVELG 181
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
V+ VS ++ L +DFISLH+PL P T + N + MK G I+N +RGGVIDEEAL+
Sbjct: 182 VKTVSLEELLKNSDFISLHVPLTPETKHMINKKELELMKDGAIIINTSRGGVIDEEALLE 241
Query: 332 ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391
AL SG +A AALDVF EPP SKL++ NV++TPH+GASTKEAQE + E+A ++
Sbjct: 242 ALKSGKLAGAALDVFENEPP-PGSKLLELPNVSLTPHIGASTKEAQERIGEELANKIIEF 300
Query: 392 L 392
L
Sbjct: 301 L 301
|
Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301 |
| >gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 339 bits (871), Expect = e-112
Identities = 137/313 (43%), Positives = 184/313 (58%), Gaps = 14/313 (4%)
Query: 86 AVTPKPTILVSEKLGEAGLAILRSFG-NVECL---YDLSPEALCEKISQCDALIVRSGT- 140
VTP+ K E +L + G V L+ E L E + D +I G
Sbjct: 3 LVTPRSF----SKYSEEAKELLEAAGFEVVLNPLGRPLTEEELIELLKDADGVIA--GLD 56
Query: 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLAS 200
+T V AA +LKV+ R GVG DN+DL+AA + G +V N P AN+ + AE I L+ +
Sbjct: 57 PITEEVLAAAP-RLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLA 115
Query: 201 MARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260
+AR + QAD ++AG W + VG L GKTL ++G G++G VARR G GM V+A+DP
Sbjct: 116 LARQIPQADREVRAGGW--DRPVGTELYGKTLGIIGLGRIGKAVARRLSGFGMKVLAYDP 173
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
Y + A+ GVE VS ++ L +DFISLH+PL P T + N A MK G ++N AR
Sbjct: 174 YPDEEFAKEHGVEFVSLEELLKESDFISLHLPLTPETRHLINAAELALMKPGAILINTAR 233
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
GG++DEEAL AL SG +A AALDVF EEPP DS L++ NV +TPH+GASTKEA +
Sbjct: 234 GGLVDEEALYEALKSGRIAGAALDVFEEEPPPADSPLLELPNVILTPHIGASTKEAVLRM 293
Query: 381 AIEIAEAVVGALR 393
A+ V+ L
Sbjct: 294 GTMAAQNVIDVLA 306
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306 |
| >gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain | Back alignment and domain information |
|---|
Score = 304 bits (781), Expect = 1e-98
Identities = 135/314 (42%), Positives = 184/314 (58%), Gaps = 6/314 (1%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ L L +L+ G VE +L E L E DALIVRS T VT V EAA
Sbjct: 1 VLITDPLRPEELELLKEGGEVEVHDELLTEELLEAAKDADALIVRSTTPVTAEVLEAAP- 59
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LKV+ R GVG+DN+DL AATE G LV N P +T + AE + L+ ++AR + +ADAS+
Sbjct: 60 GLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEADASV 119
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
+AG W + +G+ L GKTL V+G G +G A AK LGM V+A+DPY ++A GV
Sbjct: 120 RAGDWKKGGPIGLELYGKTLGVIGGGGIGGIGAAIAKALGMGVVAYDPYPNPERAEEGGV 179
Query: 273 ELVSFDQAL----ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
E++ D L + D I+L P T I +E +K V I N GGVI+E A
Sbjct: 180 EVLLLDLLLLDLKESDDLINLAPPTTMKTGHIIINEARGMLKDAVAINNARGGGVIEEAA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L L+ G+ A AALDV EEPP +S L+ NV +TPH+ +T+EAQE +A E AE +
Sbjct: 240 LDALLEEGIAA-AALDVVEEEPPPVNSPLLDLPNVILTPHIAGATEEAQENMAEEAAENL 298
Query: 389 VGALRGELSATAIN 402
+ L+G A+N
Sbjct: 299 LAFLKGGTPPNAVN 312
|
This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312 |
| >gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family | Back alignment and domain information |
|---|
Score = 303 bits (778), Expect = 2e-98
Identities = 124/301 (41%), Positives = 175/301 (58%), Gaps = 4/301 (1%)
Query: 92 TILVSEKLGE-AGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+LV E L L L + G V DL + L ++ DALIV S T VT V
Sbjct: 1 KVLVLEPLFPPEALEALEATGFEVIVADDLLADELEALLADADALIVSSTTPVTAEVLAK 60
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A KLK + AG G+DN+DL AA + G V N P AN A AEH + LL ++ R + +AD
Sbjct: 61 AP-KLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRAD 119
Query: 210 ASIKAGK-WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
A+++ G WL + + G L GKT+ ++G G++G VA+R + GM V+ +D +
Sbjct: 120 AAVRRGWGWLWAGFPGYELEGKTVGIVGLGRIGQRVAKRLQAFGMKVLYYDRTRKPEPEE 179
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G +VS D+ LA +D + LH+PL P T + N+E A MK G +VN ARGG++DE+A
Sbjct: 180 DLGFRVVSLDELLAQSDVVVLHLPLTPETRHLINEEELALMKPGAVLVNTARGGLVDEDA 239
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L+RAL SG +A AALDVF EP D L++ NV +TPH+ T+EA+E +A E +
Sbjct: 240 LLRALKSGKIAGAALDVFEPEPLPADHPLLELPNVILTPHIAGYTEEARERMAEIAVENL 299
Query: 389 V 389
Sbjct: 300 E 300
|
Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302 |
| >gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH) | Back alignment and domain information |
|---|
Score = 298 bits (767), Expect = 1e-96
Identities = 122/311 (39%), Positives = 172/311 (55%), Gaps = 9/311 (2%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYD----LSPEALCEKISQCDALIVRSGTKVTRSV 146
P +LV+ +L E LA+LR VE ++D L E L E D L+ K+ +
Sbjct: 1 PKVLVTRRLPEEALALLREGFEVE-VWDEDRPLPREELLEAAKGADGLLCTLTDKIDAEL 59
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+AA LKV+ VG D++D+ AA G V N P T A A+ ALL + AR V
Sbjct: 60 LDAA-PPLKVIANYSVGYDHIDVDAAKARGIPVTNTPDVLTDATADLAFALLLAAARRVV 118
Query: 207 QADASIKAGKWLR---SKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
+ D ++AG+W + +G L GKTL ++G G++G VARRAKG GM ++ H+
Sbjct: 119 EGDRFVRAGEWKGWSPTLLLGTDLHGKTLGIVGMGRIGQAVARRAKGFGMKILYHNRSRK 178
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G VS D+ LA +DF+SLH PL P T + N E A MK ++N ARGGV
Sbjct: 179 PEAEEELGARYVSLDELLAESDFVSLHCPLTPETRHLINAERLALMKPTAILINTARGGV 238
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383
+DE+ALV AL SG +A A LDVF EP D L+ NV + PH+G++T E + +A
Sbjct: 239 VDEDALVEALKSGKIAGAGLDVFEPEPLPADHPLLTLPNVVLLPHIGSATVETRTAMAEL 298
Query: 384 IAEAVVGALRG 394
A+ ++ L G
Sbjct: 299 AADNLLAVLAG 309
|
D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309 |
| >gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor | Back alignment and domain information |
|---|
Score = 295 bits (757), Expect = 4e-95
Identities = 129/298 (43%), Positives = 175/298 (58%), Gaps = 10/298 (3%)
Query: 99 LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVG 158
L EAG+ ++ + + L E + DAL+V+ VT V EA +LKV+
Sbjct: 20 LEEAGVELVD-------AQSRTEDELIEAAADADALLVQY-APVTAEVIEALP-RLKVIV 70
Query: 159 RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL 218
R GVG+DNVD+ AATE G V N P T A+H +AL+ ++AR + D +++AG W
Sbjct: 71 RYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRAVRAGGWD 130
Query: 219 RSKYVGV-SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSF 277
+ + L G TL ++GFG++G VA+RAK G VIA+DPY P A GV +VS
Sbjct: 131 WTVGGPIRRLRGLTLGLVGFGRIGRAVAKRAKAFGFRVIAYDPYVPDGVAALGGVRVVSL 190
Query: 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337
D+ LA +D +SLH PL P T + + E A MK G +VN ARGG++DE AL RAL SG
Sbjct: 191 DELLARSDVVSLHCPLTPETRHLIDAEALALMKPGAFLVNTARGGLVDEAALARALKSGR 250
Query: 338 VAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
+A AALDV EEPP DS L+ NV +TPH ++E+ + + AE VV LRGE
Sbjct: 251 IAGAALDVLEEEPPPADSPLLSAPNVILTPHAAWYSEESLAELRRKAAEEVVRVLRGE 308
|
The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312 |
| >gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Score = 287 bits (738), Expect = 4e-92
Identities = 121/323 (37%), Positives = 170/323 (52%), Gaps = 10/323 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEA--LCEKISQCDALIVRSGTKVTRSVF 147
K +L + KL L L+ VE D L E++ DA+I ++ V
Sbjct: 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVL 61
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E G LK++ G DNVDL+AA E G V N P +T A AEH +AL+ ++AR + +
Sbjct: 62 EKLPG-LKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHE 120
Query: 208 ADASIKAGKWLRSKYV----GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
D ++ G W S G L GKTL ++G G++G VARR KG GM V+ +D
Sbjct: 121 GDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSPN 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + +G V D+ LA +D ISLH PL P T + N E AKMK G +VN ARGG+
Sbjct: 181 PEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL---VQHENVTVTPHLGASTKEAQEGV 380
+DE+AL+ AL SG +A A LDVF EP D L NV +TPH+ ++T+EA++ +
Sbjct: 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAM 300
Query: 381 AIEIAEAVVGALRGELSATAINA 403
A E + G + +N
Sbjct: 301 AELALENLEAFFDGGVPPNEVNP 323
|
Length = 324 |
| >gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 8e-92
Identities = 109/311 (35%), Positives = 170/311 (54%), Gaps = 7/311 (2%)
Query: 92 TILVSEKLGEAGLAILRS----FGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+L +LR+ VE + + ++ D L+ + +
Sbjct: 1 KVLFLGPEFPDAEELLRALLPPAPGVEVVTAAELDEEAALLADADVLVPGMRKVIDAEL- 59
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
AA +L+++ + GVG+D VDL+AAT G V N P N + AEH + L+ ++ R + +
Sbjct: 60 LAAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPE 119
Query: 208 ADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
AD ++AG+W R + L GKT+ ++G G +G VARR +G G+ VI +D + +
Sbjct: 120 ADRELRAGRWGRPEGRPSRELSGKTVGIVGLGNIGRAVARRLRGFGVEVIYYDRFRDPEA 179
Query: 267 A-RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
+ +GV V D+ LA +D +SLH+PL P T + E A MK G ++N ARGG++D
Sbjct: 180 EEKDLGVRYVELDELLAESDVVSLHVPLTPETRHLIGAEELAAMKPGAILINTARGGLVD 239
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
EEAL+ AL SG +A A LDVF +EP D L++ +NV +TPH+ T E+ + +A +A
Sbjct: 240 EEALLAALRSGHLAGAGLDVFWQEPLPPDDPLLRLDNVILTPHIAGVTDESYQRMAAIVA 299
Query: 386 EAVVGALRGEL 396
E + LRGE
Sbjct: 300 ENIARLLRGEP 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311 |
| >gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 274 bits (702), Expect = 6e-87
Identities = 108/262 (41%), Positives = 155/262 (59%), Gaps = 10/262 (3%)
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVG--RAGVGIDNVDLQAATEFGCL 178
E L E + D LI VT+ V EAA KLK++G R G +NVD++AATE G
Sbjct: 37 EEELLEALKDADILITHFAP-VTKKVIEAAP-KLKLIGVCRGGP--ENVDVEAATERGIP 92
Query: 179 VVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY----VGVSLVGKTLAV 234
V+N P N A AE + L+ + RN+++A A++K G+W + Y G L GKT+ +
Sbjct: 93 VLNTPGRNAEAVAEFTVGLMLAETRNIARAHAALKDGEWRKDYYNYDGYGPELRGKTVGI 152
Query: 235 MGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294
+GFG +G VA+R K G V+ +DPY +K A GV+ VS ++ L +D +SLH L
Sbjct: 153 VGFGAIGRRVAKRLKAFGAEVLVYDPYVDPEKIEADGVKKVSLEELLKRSDVVSLHARLT 212
Query: 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD 354
P T + E FA MK +N AR G++DE+AL+ AL+ G + AALDVF EEP D
Sbjct: 213 PETRGMIGAEEFALMKPTAYFINTARAGLVDEDALIEALEEGKIGGAALDVFPEEPLPAD 272
Query: 355 SKLVQHENVTVTPHLGASTKEA 376
L++ +NVT+TPH+ +T++
Sbjct: 273 HPLLKLDNVTLTPHIAGATRDV 294
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 268 bits (687), Expect = 1e-84
Identities = 121/289 (41%), Positives = 175/289 (60%), Gaps = 4/289 (1%)
Query: 117 YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176
D+S +AL EK+ D +I + FE +G LK++ R G+G DNVDL+AATE G
Sbjct: 34 PDISGKALAEKLKGYDIIIASVTPNFDKEFFEYNDG-LKLIARHGIGYDNVDLKAATEHG 92
Query: 177 CLVVNAP-IANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAV 234
+V P A AEH +AL+ ++ R ++QA ++K GKW R+ +VG L GKT+ +
Sbjct: 93 VIVTRVPGAVERDAVAEHAVALILTVLRKINQASEAVKEGKWTERANFVGHELSGKTVGI 152
Query: 235 MGFGKVGSEVARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL 293
+G+G +GS VA K G V+A+DPY + + G + VS ++ LA +D ISLH PL
Sbjct: 153 IGYGNIGSRVAEILKEGFNAKVLAYDPYVSEEVIKKKGAKPVSLEELLAESDIISLHAPL 212
Query: 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
T + N++ F+KMKKGV +VN ARG +IDEEAL+ AL SG +A A LDV EEP
Sbjct: 213 TEETYHMINEKAFSKMKKGVILVNTARGELIDEEALIEALKSGKIAGAGLDVLEEEPIKA 272
Query: 354 DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402
D L+ +ENV +TPH+GA T E+ G+ ++ + + L G+ +N
Sbjct: 273 DHPLLHYENVVITPHIGAYTYESLYGMGEKVVDDIEDFLAGKEPKGILN 321
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321 |
| >gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 263 bits (675), Expect = 7e-83
Identities = 109/311 (35%), Positives = 172/311 (55%), Gaps = 9/311 (2%)
Query: 92 TILVSEKLGEAGLAILRSFGNVEC---LYDLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
+LV+ + + L L V L +S E L E+I+ DALI T V + + +
Sbjct: 2 KVLVTGWIPKEALEELEENFEVTYYDGLGLISKEELLERIADYDALITPLSTPVDKEIID 61
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA LK++ G G DN+D+ A E G V N P +T AE L+ ++AR +++
Sbjct: 62 AAK-NLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARRIAEG 120
Query: 209 DASIKAGKWL---RSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APA 264
D ++ G +L ++G L GKTL ++G G++G VARRAK GM ++ ++ +
Sbjct: 121 DRLMRRGGFLGWAPLFFLGHELAGKTLGIIGMGRIGQAVARRAKAFGMKILYYNRHRLSE 180
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
+ + +G V D+ L +DF+SLH P P T + + F MK ++N ARG ++
Sbjct: 181 ETEKELGATYVDLDELLKESDFVSLHAPYTPETHHLIDAAAFKLMKPTAYLINAARGPLV 240
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384
DE+ALV AL +G +A AALDVF EP +L + +NV +TPH+G +T EA++ +A E
Sbjct: 241 DEKALVDALKTGEIAGAALDVFEFEPEVSP-ELKKLDNVILTPHIGNATVEARDAMAKEA 299
Query: 385 AEAVVGALRGE 395
A+ ++ L G+
Sbjct: 300 ADNIISFLEGK 310
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317 |
| >gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 259 bits (663), Expect = 3e-81
Identities = 120/307 (39%), Positives = 170/307 (55%), Gaps = 31/307 (10%)
Query: 92 TILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL + K+ + GL + + Y++ +AL DALIVRS K+ + A
Sbjct: 2 KILTANKISKKGLERFK-----KDKYEVKEDAL----EDPDALIVRS-DKLH--DMDFAP 49
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA--- 208
LK + RAG G++N+D+ AA++ G +V N P AN A AE IA++ +++RN+ QA
Sbjct: 50 S-LKAIARAGAGVNNIDVDAASKRGIVVFNTPGANANAVAELVIAMMLALSRNIIQAIKW 108
Query: 209 ------DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
D K + + ++VG L GKTL V+G G +G VA A LGM VI +DPY
Sbjct: 109 VTNGDGDDISKGVEKGKKQFVGTELRGKTLGVIGLGNIGRLVANAALALGMKVIGYDPYL 168
Query: 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ A + VE+ S ++ LATAD+I+LH+PL T + N E AKMK G ++N A
Sbjct: 169 SVEAAWKLSVEVQRVTSLEELLATADYITLHVPLTDETRGLINAELLAKMKPGAILLNFA 228
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG ++DEEAL+ ALD G + + F E PA NV TPHLGAST+EA+E
Sbjct: 229 RGEIVDEEALLEALDEGKL-GGYVTDFPE--PALLGH---LPNVIATPHLGASTEEAEEN 282
Query: 380 VAIEIAE 386
A+ A
Sbjct: 283 CAVMAAR 289
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305 |
| >gnl|CDD|217244 pfam02826, 2-Hacid_dh_C, D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Score = 248 bits (637), Expect = 3e-79
Identities = 82/176 (46%), Positives = 115/176 (65%), Gaps = 1/176 (0%)
Query: 195 IALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254
+ALL ++AR + +AD ++AG+W +G L GKT+ ++G G++G VARR K GM
Sbjct: 1 LALLLALARRIPEADRQVRAGRWRPDALLGRELSGKTVGIIGLGRIGRAVARRLKAFGMK 60
Query: 255 VIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314
VIA+D Y P +A A+G VS D+ LA +D +SLH+PL P T + N E A MK G
Sbjct: 61 VIAYDRY-PKAEAEALGARYVSLDELLAESDVVSLHLPLTPETRHLINAERLALMKPGAI 119
Query: 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
++N ARGG++DE+AL+ AL SG +A AALDVF EP D L++ NV +TPH+
Sbjct: 120 LINTARGGLVDEDALIAALKSGRIAGAALDVFEPEPLPPDHPLLELPNVILTPHIA 175
|
This domain is inserted into the catalytic domain, the large dehydrogenase and D-lactate dehydrogenase families in SCOP. N-terminal portion of which is represented by family pfam00389. Length = 175 |
| >gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 251 bits (644), Expect = 2e-78
Identities = 107/283 (37%), Positives = 158/283 (55%), Gaps = 15/283 (5%)
Query: 104 LAILRSFGNVECLYDL-SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
L G + YD SPE + E+I D +I + + V LK++G
Sbjct: 18 WDPLEFLGELTV-YDRTSPEEVVERIKDADIVIT-NKVVLDAEVLAQLP-NLKLIGVLAT 74
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-- 220
G +NVDL AA E G V N P +T + A+H ALL ++AR V+ + +KAG+W +S
Sbjct: 75 GYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVVKAGEWQKSPD 134
Query: 221 ----KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS 276
Y + L GKTL ++G+G +G VAR A+ GM V+ + + VS
Sbjct: 135 FCFWDYPIIELAGKTLGIIGYGNIGQAVARIARAFGMKVLFAERKGAPP----LREGYVS 190
Query: 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336
D+ LA +D ISLH PL P T + N E AKMK G ++N ARGG++DE+AL AL+SG
Sbjct: 191 LDELLAQSDVISLHCPLTPETRNLINAEELAKMKPGAILINTARGGLVDEQALADALNSG 250
Query: 337 VVAQAALDVFTEEPPAKDSKLVQ-HENVTVTPHLGASTKEAQE 378
+A A LDV ++EPP D+ L++ N+ +TPH+ +++EA++
Sbjct: 251 KIAGAGLDVLSQEPPRADNPLLKAAPNLIITPHIAWASREARQ 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307 |
| >gnl|CDD|240653 cd12176, PGDH_3, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 242 bits (620), Expect = 6e-75
Identities = 112/292 (38%), Positives = 168/292 (57%), Gaps = 13/292 (4%)
Query: 106 ILRSFG-NVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVG 163
+ R+ G VE L L + L E + L +RS T++T V EAA KL +G +G
Sbjct: 16 LFRAGGIEVERLKGALDEDELIEALKDVHLLGIRSKTQLTEEVLEAAP-KLLAIGCFCIG 74
Query: 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV 223
+ VDL AA + G V NAP +NT + AE I + +AR + +A+ G W +S
Sbjct: 75 TNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIIMLARRLPDRNAAAHRGIWNKSATG 134
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELVSFDQAL 281
+ GKTL ++G+G +GS+++ A+ LGM VI +D + +G ++ S ++ L
Sbjct: 135 SHEVRGKTLGIIGYGHIGSQLSVLAEALGMRVIFYD----IAEKLPLGNARQVSSLEELL 190
Query: 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341
A ADF++LH+P P+T + E A+MKKG ++N +RG V+D +AL AL SG +A A
Sbjct: 191 AEADFVTLHVPATPSTKNMIGAEEIAQMKKGAILINASRGTVVDIDALAEALRSGHLAGA 250
Query: 342 ALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
A+DVF EEP + S L NV +TPH+G ST+EAQE + +E+A +V
Sbjct: 251 AVDVFPEEPASNGEPFSSPLQGLPNVILTPHIGGSTEEAQENIGLEVAGKLV 302
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304 |
| >gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Score = 238 bits (609), Expect = 5e-73
Identities = 120/327 (36%), Positives = 186/327 (56%), Gaps = 12/327 (3%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSP---EALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D E L EK+ DAL+ ++ V
Sbjct: 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FEAA +L++V VG DN+D++ AT G V N P T A A+ ALL + AR +
Sbjct: 62 FEAAP-RLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLV 120
Query: 207 QADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+AD +++G+W R ++G + GKT+ ++GFG++G VARRAKG GM ++ +
Sbjct: 121 EADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ + +G E ++ L +DF+SLH+PL T + N+E MK +VN A
Sbjct: 181 RTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG V+D +ALV+AL G +A A LDVF EE P + +L +NV + PH+G++T EA+EG
Sbjct: 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEE-PYYNEELFSLKNVVLAPHIGSATFEAREG 299
Query: 380 VAIEIAEAVVGALRGELSATAINAPMV 406
+A +AE ++ RGE+ T +N +V
Sbjct: 300 MAELVAENLIAFKRGEVPPTLVNREVV 326
|
Length = 333 |
| >gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases | Back alignment and domain information |
|---|
Score = 235 bits (603), Expect = 2e-72
Identities = 107/295 (36%), Positives = 162/295 (54%), Gaps = 10/295 (3%)
Query: 102 AGLAILRSFGNVECLYDLSPEALCEKISQCDALIV-RSGTKVTRSVFEAANGKLKVVGRA 160
A + F + + L +AL E+++ DA+++ R T ++ E LK++
Sbjct: 22 DDRAEVTVFND----HLLDEDALAERLAPFDAIVLMRERTPFPAALLER-LPNLKLLVTT 76
Query: 161 GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS 220
G+ ++DL AA E G +V A AE AL+ ++ARN+ + DA+++AG W +
Sbjct: 77 GMRNASIDLAAAKERGIVVCGTG-GGPTATAELTWALILALARNLPEEDAALRAGGWQTT 135
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQ 279
+G L GKTL ++G G++G+ VAR + GM VIA A++A A GVE VS ++
Sbjct: 136 --LGTGLAGKTLGIVGLGRIGARVARIGQAFGMRVIAWSSNLTAERAAAAGVEAAVSKEE 193
Query: 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339
AT+D +SLH+ L+ T + E A MK +VN +RG ++DE AL+ AL +G +A
Sbjct: 194 LFATSDVVSLHLVLSDRTRGLVGAEDLALMKPTALLVNTSRGPLVDEGALLAALRAGRIA 253
Query: 340 QAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394
AALDVF EP D L NV +TPH+G T+EA EG + E + L G
Sbjct: 254 GAALDVFDVEPLPADHPLRGLPNVLLTPHIGYVTEEAYEGFYGQAVENIAAWLAG 308
|
Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308 |
| >gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases | Back alignment and domain information |
|---|
Score = 234 bits (599), Expect = 1e-71
Identities = 101/242 (41%), Positives = 139/242 (57%), Gaps = 7/242 (2%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
LK++ AG G D +D+ A T+ G V N P A A A+ + L+ RN S+A+ S +
Sbjct: 77 LKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAERSAR 136
Query: 214 AGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARAV 270
AGKW + GKTL ++G G +G +AR+A GM +I H+ P + +A+
Sbjct: 137 AGKWRGFLDLTLAHDPRGKTLGILGLGGIGKAIARKAAAFGMKIIYHNRSRLPEELEKAL 196
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
VS D+ LA +D +SL+ PL T + N + FAKMK GV IVN ARG VIDE+ALV
Sbjct: 197 ATYYVSLDELLAQSDVVSLNCPLTAATRHLINKKEFAKMKDGVIIVNTARGAVIDEDALV 256
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ---EGVAIEIAEA 387
AL+SG VA A LDVF EP + L++ NVT+ PH+G T E Q E + +E EA
Sbjct: 257 DALESGKVASAGLDVFENEPEV-NPGLLKMPNVTLLPHMGTLTVETQEKMEELVLENIEA 315
Query: 388 VV 389
+
Sbjct: 316 FL 317
|
D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321 |
| >gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 231 bits (591), Expect = 2e-70
Identities = 112/307 (36%), Positives = 159/307 (51%), Gaps = 17/307 (5%)
Query: 105 AILRSFG-NVEC-LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
IL++ G +VE Y L+ + E DA++ K+ + + A G LK +
Sbjct: 18 EILKAGGVDVEIVTYLLNDDETAELAKGADAILTAFTDKIDAELLDKAPG-LKFISLRAT 76
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY 222
G DN+DL A E G V N P + A AEH IAL+ ++ RN D K +
Sbjct: 77 GYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRNRKYIDERDKNQDLQDAGV 136
Query: 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA 282
+G L +T+ V+G GK+G VA+RAKG GM VIA+DP+ + GV+ VS ++
Sbjct: 137 IGRELEDQTVGVVGTGKIGRAVAQRAKGFGMKVIAYDPFRNPELE-DKGVKYVSLEELFK 195
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA 342
+D ISLH+PL P + N+E F MKKGV I+N ARG ++D EAL+ ALDSG + A
Sbjct: 196 NSDIISLHVPLTPENHHMINEEAFKLMKKGVIIINTARGSLVDTEALIEALDSGKIFGAG 255
Query: 343 LDVFTEEPP-------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
LDV +E P A ++ L + NV +TPH T +A + + E +V
Sbjct: 256 LDVLEDETPDLLKDLEGEIFKDALNALLGRRPNVIITPHTAFYTDDALKNMVEISCENIV 315
Query: 390 GALRGEL 396
L GE
Sbjct: 316 DFLEGEE 322
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323 |
| >gnl|CDD|236985 PRK11790, PRK11790, D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 3e-65
Identities = 117/329 (35%), Positives = 179/329 (54%), Gaps = 20/329 (6%)
Query: 90 KPTILVSEKLGEAGLAILRS--FGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + ++ + +LR+ + N+E L E L E I + +RS T++T V
Sbjct: 10 KIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEV 69
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I + + R +
Sbjct: 70 LAAAE-KLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIP 128
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+ +A G W +S + GKTL ++G+G +G++++ A+ LGM V +D DK
Sbjct: 129 EKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYDI---EDK 185
Query: 267 -----ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
AR VG S ++ LA +D +SLH+P P+T + E A MK G ++N +RG
Sbjct: 186 LPLGNARQVG----SLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRG 241
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQ 377
V+D +AL AL SG +A AA+DVF EP + S L +NV +TPH+G ST+EAQ
Sbjct: 242 TVVDIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQ 301
Query: 378 EGVAIEIAEAVVGALRGELSATAINAPMV 406
E + +E+A +V + +A+N P V
Sbjct: 302 ENIGLEVAGKLVKYSDNGSTLSAVNFPEV 330
|
Length = 409 |
| >gnl|CDD|240644 cd12167, 2-Hacid_dh_8, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 3e-65
Identities = 97/281 (34%), Positives = 145/281 (51%), Gaps = 8/281 (2%)
Query: 99 LGEAGLAILRSFGNV---ECLYDLSPEALCEKISQCDALIVRSGT-KVTRSVFEAANGKL 154
G A LA L + V D + E L ++ + L+ GT + + A +L
Sbjct: 15 FGPAALARLAALAEVLPPTPDADFAAEELRALLAGVEVLVTGWGTPPLDAELLARA-PRL 73
Query: 155 KVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKA 214
+ V A + + A E G LV +A AN AE +A + R + + A+ +A
Sbjct: 74 RAVVHAAGSVRGLVTDAVWERGILVTSAADANAEPVAEFTLAAILLALRRIPRFAAAYRA 133
Query: 215 GKWL--RSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
G+ ++ G L G+T+ ++GFG++G V + G+ V+ +DPY PA +A A+GV
Sbjct: 134 GRDWGWPTRRGGRGLYGRTVGIVGFGRIGRAVVELLRPFGLRVLVYDPYLPAAEAAALGV 193
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
ELVS D+ LA +D +SLH PL P T + + A M+ G +N ARG ++DE AL+
Sbjct: 194 ELVSLDELLARSDVVSLHAPLTPETRGMIDARLLALMRDGATFINTARGALVDEAALLAE 253
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
L SG + +AALDV EP DS L NV +TPH+ ST
Sbjct: 254 LRSGRL-RAALDVTDPEPLPPDSPLRTLPNVLLTPHIAGST 293
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 330 |
| >gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 210 bits (536), Expect = 2e-62
Identities = 97/259 (37%), Positives = 139/259 (53%), Gaps = 25/259 (9%)
Query: 140 TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI--ANTVAAAEHGIAL 197
+++ V E +LK++ G D++DL+A E G V N P TVA EH AL
Sbjct: 51 SRLDAEVLEKLP-RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVA--EHAFAL 107
Query: 198 LASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
L +++R + +A + G + ++ G L GKTL V+G G++G VAR A+G GM V+A
Sbjct: 108 LLALSRKLREAIERTRRGDFSQAGLRGFELAGKTLGVVGTGRIGRRVARIARGFGMKVLA 167
Query: 258 HDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
+D + A +G VS ++ L +D ISLH+P P T + N E FA MK G ++N
Sbjct: 168 YDVVPDEELAERLGFRYVSLEELLQESDIISLHVPYTPQTHHLINRENFALMKPGAVLIN 227
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEP-------------PAKDSK-------L 357
ARG V+D EALVRAL G +A A LDV +E +D K L
Sbjct: 228 TARGAVVDTEALVRALKEGKLAGAGLDVLEQEEVLREEAELFREDVSPEDLKKLLADHAL 287
Query: 358 VQHENVTVTPHLGASTKEA 376
++ NV +TPH+ +TKEA
Sbjct: 288 LRKPNVIITPHVAYNTKEA 306
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240656 cd12179, 2-Hacid_dh_14, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 2e-61
Identities = 102/305 (33%), Positives = 154/305 (50%), Gaps = 16/305 (5%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
IL+ +K + +L + G V+ +S E + I Q D LI+RS + + E A
Sbjct: 2 ILIIDKNHPSLTELLEALGFEVDYDPTISREEILAIIPQYDGLIIRSRFPIDKEFIEKAT 61
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
LK + RAG G++N+DL+ A E G + NAP N A EH + +L ++ +++AD
Sbjct: 62 -NLKFIARAGAGLENIDLEYAKEKGIELFNAPEGNRDAVGEHALGMLLALFNKLNRADQE 120
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARAV 270
++ G W R GV L+GKT+ ++G+G +G A+R G G VIA+D Y D
Sbjct: 121 VRNGIWDREGNRGVELMGKTVGIIGYGNMGKAFAKRLSGFGCKVIAYDKYKNFGDA---- 176
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
E VS + AD +SLH+PL P T + N E + KK +N ARG V+ + LV
Sbjct: 177 YAEQVSLETLFKEADILSLHIPLTPETRGMVNKEFISSFKKPFYFINTARGKVVVTKDLV 236
Query: 331 RALDSGVVAQAALDVF---------TEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
+AL SG + A LDV P L++ V +TPH+ T E+ E +A
Sbjct: 237 KALKSGKILGACLDVLEYEKASFESIFNQPEAFEYLIKSPKVILTPHIAGWTFESYEKIA 296
Query: 382 IEIAE 386
+ +
Sbjct: 297 EVLVD 301
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 9e-61
Identities = 102/319 (31%), Positives = 161/319 (50%), Gaps = 15/319 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVEC-LYD--LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP ++++ K+ L +L+ V D LS E L + D L+ ++
Sbjct: 1 KPKVVITHKVHPEVLELLKPHCEVISNQTDEPLSREELLRRCKDADGLMAFMPDRIDADF 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A +LK++ A G DN D++A T G V P T AE I LL + R++
Sbjct: 61 LDACP-RLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHIL 119
Query: 207 QADASIKAGK--WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
D +++GK R K+ G L GKT+ ++G G +G +ARR G G ++ +DP+
Sbjct: 120 AGDRFVRSGKFGGWRPKFYGTGLDGKTVGILGMGALGRAIARRLSGFGATLLYYDPHPLD 179
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +A+ + V D+ L ++DF+ L +PL P T + N E AKMK G +VN RG V
Sbjct: 180 QAEEQALNLRRVELDELLESSDFLVLALPLTPDTLHLINAEALAKMKPGALLVNPCRGSV 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSK--------LVQHENVTVTPHLGASTKE 375
+DE A+ AL SG + A DVF E A+ + L QH+ TPH+G++ E
Sbjct: 240 VDEAAVAEALKSGHLGGYAADVFEMEDWARPDRPRSIPQELLDQHDRTVFTPHIGSAVDE 299
Query: 376 AQEGVAIEIAEAVVGALRG 394
+ + +E A ++ AL+G
Sbjct: 300 VRLEIELEAALNILQALQG 318
|
Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318 |
| >gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 9e-59
Identities = 106/271 (39%), Positives = 146/271 (53%), Gaps = 21/271 (7%)
Query: 131 CDALIVRSGTKVTRSVFE--AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTV 188
DA+ V + V E A G +K++ G +NVDL+AA E G VV P +
Sbjct: 45 FDAVCVFVNDDLDAPVLEKLAELG-VKLIALRCAGFNNVDLKAAKELGITVVRVPAYSPY 103
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A AEH +ALL ++ R + +A ++ G + +G L GKT+ V+G GK+G AR
Sbjct: 104 AVAEHAVALLLALNRKIHRAYNRVREGNFSLDGLLGFDLHGKTVGVIGTGKIGQAFARIL 163
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308
KG G V+A+DPY P + +GVE V D+ LA +D ISLH PL P T + N ET AK
Sbjct: 164 KGFGCRVLAYDPY-PNPELAKLGVEYVDLDELLAESDIISLHCPLTPETHHLINAETIAK 222
Query: 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA--KD-----------S 355
MK GV ++N +RGG+ID +AL+ AL SG + LDV+ EE +D +
Sbjct: 223 MKDGVMLINTSRGGLIDTKALIEALKSGKIGGLGLDVYEEEAGLFFEDHSDEIIQDDVLA 282
Query: 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
+L+ NV +T H TKEA IAE
Sbjct: 283 RLLSFPNVLITGHQAFFTKEALT----NIAE 309
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328 |
| >gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 199 bits (509), Expect = 1e-58
Identities = 98/259 (37%), Positives = 146/259 (56%), Gaps = 5/259 (1%)
Query: 121 PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV 180
L E+ D +++ + + V EA LK++ A G+D+VDL+A E G V
Sbjct: 39 TAELIERSKDADIVMI-ANMPLPGEVIEACK-NLKMISVAFTGVDHVDLEACKERGITVS 96
Query: 181 NAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKV 240
NA +T A AE I L + RN+ DA+++AG ++ +G L GKT+ ++G G +
Sbjct: 97 NAAGYSTEAVAELTIGLAIDLLRNIVPCDAAVRAGG-TKAGLIGRELAGKTVGIVGTGAI 155
Query: 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300
G VAR K G V+A+ ++A+A+G+E VS D+ LA +D +SLH+PLN T +
Sbjct: 156 GLRVARLFKAFGCKVLAYSRS-EKEEAKALGIEYVSLDELLAESDIVSLHLPLNDETKGL 214
Query: 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-AKDSKLVQ 359
E A MK+ ++N ARG V+D EAL AL+ G +A A +DVF EPP D L+
Sbjct: 215 IGKEKLALMKESAILINTARGPVVDNEALADALNEGKIAGAGIDVFDMEPPLPADYPLLH 274
Query: 360 HENVTVTPHLGASTKEAQE 378
N +TPH+ +T+EA E
Sbjct: 275 APNTILTPHVAFATEEAME 293
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315 |
| >gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 2e-58
Identities = 89/278 (32%), Positives = 134/278 (48%), Gaps = 25/278 (8%)
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFG 176
L+PE + + D ++V+ V+E A +K + G+D +DL A E G
Sbjct: 33 LLTPETV-DLAKGYDGVVVQQTLPYDEEVYEKLAEYGIKQIALRSAGVDMIDLDLAKENG 91
Query: 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK-----T 231
+ N P + A AE + ++ RN + D + G + + L+G+ T
Sbjct: 92 LKITNVPAYSPRAIAEFAVTQALNLLRNTPEIDRRVAKGDFRWAP----GLIGREIRDLT 147
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ ++G G++GS A+ KG G VIA+DPY P + + S + L AD ISLH+
Sbjct: 148 VGIIGTGRIGSAAAKIFKGFGAKVIAYDPY-PNPELEKFLLYYDSLEDLLKQADIISLHV 206
Query: 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE-- 349
PL + N E FAKMK G +VN ARGG++D +AL+ ALDSG +A AALD + E
Sbjct: 207 PLTKENHHLINAEAFAKMKDGAILVNAARGGLVDTKALIDALDSGKIAGAALDTYENETG 266
Query: 350 -----------PPAKDSKLVQHENVTVTPHLGASTKEA 376
+L+ NV +TPH+ T A
Sbjct: 267 YFNKDWSGKEIEDEVLKELIAMPNVLITPHIAFYTDTA 304
|
D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329 |
| >gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase | Back alignment and domain information |
|---|
Score = 198 bits (505), Expect = 4e-58
Identities = 97/294 (32%), Positives = 142/294 (48%), Gaps = 10/294 (3%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAA 150
ILV L + L LR+ L ++ E L E+++ D L+ G + AA
Sbjct: 1 MKILVLSPLDDEHLERLRAAAPGAELRVVTAEELTEELADADVLL---GNPPLPELLPAA 57
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
+L+ + G+D + E ++ NA AE+ + + + AR + +
Sbjct: 58 -PRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKLPRYAR 116
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA---HDPYAPADKA 267
+ +W R V L GKT+ ++G G +G E+ARRAK GM VI AP
Sbjct: 117 NQAERRWQRRGPVR-ELAGKTVLIVGLGDIGREIARRAKAFGMRVIGVRRSGRPAPPVVD 175
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ D+ L AD++ +PL P T +FN E FA MK G ++NV RG V+DE+
Sbjct: 176 EVYTPD--ELDELLPEADYVVNALPLTPETRGLFNAERFAAMKPGAVLINVGRGSVVDED 233
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
AL+ AL+SG +A AALDVF EEP DS L NV +TPH+ + E V
Sbjct: 234 ALIEALESGRIAGAALDVFEEEPLPADSPLWDLPNVIITPHISGDSPSYPERVV 287
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313 |
| >gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 175 bits (447), Expect = 6e-50
Identities = 89/295 (30%), Positives = 134/295 (45%), Gaps = 26/295 (8%)
Query: 116 LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEF 175
+ +L EA E + D L+ G ++T+ AA +LK++ G+D++ L+ E
Sbjct: 26 VPELPDEAAEEALEDADVLV---GGRLTKEEALAALKRLKLIQVPSAGVDHLPLERLPE- 81
Query: 176 GCLVVNAPIANT----VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGV---SLV 228
+AN A AEH +AL+ ++A+ + + D ++ G W L
Sbjct: 82 -----GVVVANNHGNSPAVAEHALALILALAKRIVEYDNDLRRGIWHGRAGEEPESKELR 136
Query: 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPADKARAVGVELVSFDQALATADF 286
GKT+ ++G+G +G E+AR K GM VI P + D+AL AD
Sbjct: 137 GKTVGILGYGHIGREIARLLKAFGMRVIGVSRSPKEDEGADFVGTLS--DLDEALEQADV 194
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVF 346
+ + +PL T + A MK G +VNV RG V+DEEAL AL +A AA+DV+
Sbjct: 195 VVVALPLTKQTRGLIGAAELAAMKPGAILVNVGRGPVVDEEALYEALKERPIAGAAIDVW 254
Query: 347 TEEPPAKDSKLVQH------ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
P D NV ++PH T+E E AE + LRGE
Sbjct: 255 WRYPSRGDPVAPSRYPFHELPNVIMSPHNAGWTEETFRRRIDEAAENIRRYLRGE 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase | Back alignment and domain information |
|---|
Score = 175 bits (446), Expect = 7e-50
Identities = 90/297 (30%), Positives = 143/297 (48%), Gaps = 24/297 (8%)
Query: 91 PTILVSEKLGEAGLAILRSFGNVECLYDLS--PEALCEKISQCDALIVRSGTKVTRSVFE 148
P +L L LA L + V L++ + L E + A++ T ++ ++
Sbjct: 1 PDVLQLGPLPPELLAELEARFTVHRLWEAADPAALLAEHGGRIRAVVTNGETGLSAALIA 60
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
A L+++ GVG D +DL AA G V N P T A+ + LL ++ R + A
Sbjct: 61 ALP-ALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAA 119
Query: 209 DASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-------P 260
D ++AG+W + + + + GK + ++G G++G +ARR + GM + H P
Sbjct: 120 DRFVRAGRWPKGAFPLTRKVSGKRVGIVGLGRIGRAIARRLEAFGMEIAYHGRRPKPDVP 179
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVA 319
Y +EL A +D + + P P T + N E + GV +VNVA
Sbjct: 180 YRYYASL----LELA------AESDVLVVACPGGPATRHLVNAEVLEALGPDGV-LVNVA 228
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA 376
RG V+DE AL+ AL G +A A LDVF E P + L+ +NV +TPH+ ++T E
Sbjct: 229 RGSVVDEAALIAALQEGRIAGAGLDVFENE-PNVPAALLDLDNVVLTPHIASATVET 284
|
Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301 |
| >gnl|CDD|180588 PRK06487, PRK06487, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (441), Expect = 5e-49
Identities = 100/307 (32%), Positives = 152/307 (49%), Gaps = 18/307 (5%)
Query: 99 LGEAGLAILRSFGNVECLYDLS-PEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVV 157
LG+ L+ L + L+D + PE + E++ I + + AA +LK++
Sbjct: 13 LGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISNK-VALDAAAL-AAAPQLKLI 70
Query: 158 GRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217
A G +NVDL AA E G V N T + A+H +ALL ++A + ++ AG+W
Sbjct: 71 LVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRW 130
Query: 218 LRSKYVG------VSLVGKTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPADKARAV 270
+S V L GKTL ++G G++G VAR A+ GM V I P PA R
Sbjct: 131 QQSSQFCLLDFPIVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLPGRPARPDR-- 188
Query: 271 GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330
+ D+ L D ++LH PL T + A MK G ++N ARGG++DE+AL
Sbjct: 189 ----LPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTARGGLVDEQALA 244
Query: 331 RALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAV 388
AL SG + AA DV + EPP + L+ + VTPH ++EA++ + ++AE
Sbjct: 245 DALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENA 304
Query: 389 VGALRGE 395
G+
Sbjct: 305 RAFFAGK 311
|
Length = 317 |
| >gnl|CDD|185307 PRK15409, PRK15409, bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Score = 170 bits (432), Expect = 1e-47
Identities = 99/320 (30%), Positives = 160/320 (50%), Gaps = 9/320 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPE---ALCEKISQCDALIVRSGTKVTRSV 146
KP++++ + L + L L V + +LSPE ++ + L+ SG KV ++
Sbjct: 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLL-GSGEKVDAAL 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
E KL+ VG DN D+ A T L+++ P T A+ +AL+ S AR V
Sbjct: 61 LEKMP-KLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVV 119
Query: 207 QADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYA 262
+ +KAG+W S + G + KTL ++G G++G +A+RA G M ++ +
Sbjct: 120 EVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH 179
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ D L +DF+ + +PL T +F E FAKMK +N RG
Sbjct: 180 HKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382
V+DE AL+ AL G + A LDVF +EP + DS L+ NV PH+G++T E + +A
Sbjct: 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAA 299
Query: 383 EIAEAVVGALRGELSATAIN 402
+ ++ AL+G++ +N
Sbjct: 300 CAVDNLIDALQGKVEKNCVN 319
|
Length = 323 |
| >gnl|CDD|181414 PRK08410, PRK08410, 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 92/316 (29%), Positives = 166/316 (52%), Gaps = 17/316 (5%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL-SPEALCEKISQCDALIVRSGTKVTRSVFE 148
K IL ++ LG+ L++ FG+ + +Y SPE + E+I + +I+ + + + V
Sbjct: 2 KIVILDAKTLGDKDLSVFEEFGDFQ-IYPTTSPEEVIERIKDAN-IIITNKVVIDKEVLS 59
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
LK++ G +NVD++ A + G V N +T + A+H A+L S+ ++
Sbjct: 60 QLP-NLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYY 118
Query: 209 DASIKAGKWLRSK-YVGVS-----LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
D +K+G++ S + +S + GK ++G G +G VA+ A+ G V+ Y+
Sbjct: 119 DRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVY---YS 175
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ K + E VS ++ L T+D IS+H PLN T + + +K G ++NV RGG
Sbjct: 176 TSGKNKNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGG 235
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ---HENVTVTPHLGASTKEAQEG 379
+++E+ L +ALD + A LDV +EP K+ L+ E + +TPH+ ++KEA++
Sbjct: 236 IVNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKT 294
Query: 380 VAIEIAEAVVGALRGE 395
+ ++ E + L G
Sbjct: 295 LIEKVKENIKDFLEGG 310
|
Length = 311 |
| >gnl|CDD|235890 PRK06932, PRK06932, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (427), Expect = 3e-47
Identities = 87/260 (33%), Positives = 130/260 (50%), Gaps = 16/260 (6%)
Query: 120 SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179
S E E+ D +++ S TR KLK++ G +NVDL AA E G V
Sbjct: 34 SAEQTIERAKDAD-IVITSKVLFTRETLAQLP-KLKLIAITATGTNNVDLVAAKELGIAV 91
Query: 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLA 233
N ++ EH + ++ ++ ++ + +W K Y + G TL
Sbjct: 92 KNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLG 151
Query: 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL 293
V G G +G+EV R A+ LGM V+ YA A F++ L AD ++LH PL
Sbjct: 152 VFGKGCLGTEVGRLAQALGMKVL----YAEHKGASVCREGYTPFEEVLKQADIVTLHCPL 207
Query: 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
TT + N ET A MK ++N RG ++DE+AL+ AL++G +A AALDV +EPP K
Sbjct: 208 TETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPPEK 267
Query: 354 DSKLVQHE----NVTVTPHL 369
D+ L+Q N+ +TPH+
Sbjct: 268 DNPLIQAAKRLPNLLITPHI 287
|
Length = 314 |
| >gnl|CDD|240635 cd12158, ErythrP_dh, D-Erythronate-4-Phosphate Dehydrogenase NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 166 bits (424), Expect = 2e-46
Identities = 89/271 (32%), Positives = 131/271 (48%), Gaps = 37/271 (13%)
Query: 105 AILRSFGNVECL--YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162
+ G V L +++ E L D L+VRS TKV ++ E + K+K VG A +
Sbjct: 13 ELFSPLGEVTYLPGREITAEDL----KDADVLLVRSVTKVNEALLEGS--KVKFVGTATI 66
Query: 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY 222
G D++D E G NAP N + AE+ ++ L +A +
Sbjct: 67 GTDHIDTDYLKERGIGFANAPGCNANSVAEYVLSALLVLA------------------QR 108
Query: 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA 282
G SL GKT+ ++G G VGS +ARR + LGMNV+ DP VS ++ LA
Sbjct: 109 QGFSLKGKTVGIVGVGNVGSRLARRLEALGMNVLLCDPPR---AEAEGDPGFVSLEELLA 165
Query: 283 TADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338
AD I+LH+PL T + +++ A +K G ++N +RG VID +AL+ L G
Sbjct: 166 EADIITLHVPLTRDGEHPTYHLLDEDFLAALKPGQILINASRGAVIDNQALLALLQRGKD 225
Query: 339 AQAALDVFTEEPPAKDSKLVQHENVT-VTPH 368
+ LDV+ EP D +L+ V TPH
Sbjct: 226 LRVVLDVWENEPEI-DLELLDK--VDIATPH 253
|
D-Erythronate-4-phosphate Dehydrogenase (E. coli gene PdxB), a D-specific 2-hydroxyacid dehydrogenase family member, catalyzes the NAD-dependent oxidation of erythronate-4-phosphate, which is followed by transamination to form 4-hydroxy-L-threonine-4-phosphate within the de novo biosynthesis pathway of vitamin B6. D-Erythronate-4-phosphate dehydrogenase has the common architecture shared with D-isomer specific 2-hydroxyacid dehydrogenases but contains an additional C-terminal dimerization domain in addition to an NAD-binding domain and the "lid" domain. The lid domain corresponds to the catalytic domain of phosphoglycerate dehydrogenase and other proteins of the D-isomer specific 2-hydroxyacid dehydrogenase family, which include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 343 |
| >gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 163 bits (414), Expect = 4e-45
Identities = 90/293 (30%), Positives = 138/293 (47%), Gaps = 43/293 (14%)
Query: 112 NVECLYDLSPEALCEKISQ----CDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDN 166
NVE L+ E L + + D + + +K++ + E +K + +G D+
Sbjct: 24 NVE--VTLTKEPLTLENAHLAEGYDGISILGKSKISAELLEKLKEAGVKYISTRSIGYDH 81
Query: 167 VDLQAATEFGCLVVNAPIA-NTVAAAEHGIALLASMARNVSQA-------DASIKA--GK 216
+DL AA E G V N + N+VA ++ + L+ R Q D S+ G+
Sbjct: 82 IDLDAAKELGIKVSNVTYSPNSVA--DYTVMLMLMALRKYKQIMKRAEVNDYSLGGLQGR 139
Query: 217 WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS 276
LR+ VGV +G G++G V + G G ++A+DPY P ++ + E V
Sbjct: 140 ELRNLTVGV---------IGTGRIGQAVIKNLSGFGCKILAYDPY-PNEEVKK-YAEYVD 188
Query: 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336
D +D I+LH PL T + N E+ AKMK GV I+N ARG +ID EAL+ L+SG
Sbjct: 189 LDTLYKESDIITLHTPLTEETYHLINKESIAKMKDGVIIINTARGELIDTEALIEGLESG 248
Query: 337 VVAQAALDVFTEEP------------PAKD-SKLVQHENVTVTPHLGASTKEA 376
+ AALDV E ++ + L NV +TPH+ T +A
Sbjct: 249 KIGGAALDVIEGEDGIYYNDRKGDILSNRELAILRSFPNVILTPHMAFYTDQA 301
|
This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322 |
| >gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family | Back alignment and domain information |
|---|
Score = 161 bits (409), Expect = 2e-44
Identities = 71/230 (30%), Positives = 111/230 (48%), Gaps = 29/230 (12%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK + G+D + L+ + G L+ N +++ AE + + + + + +A +
Sbjct: 60 NLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKKAYKNQ 119
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K KW + + L GKT+ +G G +G E+A+R K GM VI GV
Sbjct: 120 KEKKW-KMDSSLLELYGKTILFLGTGSIGQEIAKRLKAFGMKVI--------------GV 164
Query: 273 -----------ELVSFDQ---ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
+ ++ L AD + +PL T +F++ F +MKKG +NV
Sbjct: 165 NTSGRDVEYFDKCYPLEELDEVLKEADIVVNVLPLTEETHHLFDEAFFEQMKKGALFINV 224
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPH 368
RG +DE+AL+ AL + + AALDVF EEP KDS L +NV +TPH
Sbjct: 225 GRGPSVDEDALIEALKNKQIRGAALDVFEEEPLPKDSPLWDLDNVLITPH 274
|
Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314 |
| >gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH) | Back alignment and domain information |
|---|
Score = 161 bits (410), Expect = 2e-44
Identities = 80/244 (32%), Positives = 128/244 (52%), Gaps = 5/244 (2%)
Query: 142 VTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
+T A LK+ AG+G D+VDLQAA + G V +N V+ AEH + ++ +
Sbjct: 74 MTAERIAKAK-NLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILIL 132
Query: 202 ARNVSQADASIKAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
RN G W + V + L GKT+ +G G++G V RR K ++++ +D
Sbjct: 133 VRNYVPGHEQAIEGGWNVADVVKRAYDLEGKTVGTVGAGRIGLRVLRRLKPFDVHLLYYD 192
Query: 260 PYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
+ P + + +G+ + ++ D ++++ PL+P T +FN E +KMKKG +VN
Sbjct: 193 RHRLPEEVEKELGLTRHADLEDMVSKCDVVTINCPLHPETEGLFNKELLSKMKKGAYLVN 252
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
ARG + D EA+ AL+SG +A A DV+ +P KD N +TPH+ +T +AQ
Sbjct: 253 TARGKICDREAVAEALESGHLAGYAGDVWFPQPAPKDHPWRTMPNNAMTPHISGTTLDAQ 312
Query: 378 EGVA 381
A
Sbjct: 313 ARYA 316
|
NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348 |
| >gnl|CDD|215501 PLN02928, PLN02928, oxidoreductase family protein | Back alignment and domain information |
|---|
Score = 156 bits (397), Expect = 2e-42
Identities = 77/268 (28%), Positives = 138/268 (51%), Gaps = 20/268 (7%)
Query: 122 EALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVN 181
E + + I+ D + + ++ + A+ ++K++ + GVG++ VD+ AAT+ G V
Sbjct: 53 EDVPDVIANYDICVPKM-MRLDADIIARAS-QMKLIMQFGVGLEGVDVDAATKHGIKVAR 110
Query: 182 APIANT---VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238
P T + AE I L+ + R ++ S+KA + + +G +L GKT+ ++G+G
Sbjct: 111 IPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRL--GEPIGDTLFGKTVFILGYG 168
Query: 239 KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQA-------------LATAD 285
+G E+A+R + G+ ++A ++ + + D AD
Sbjct: 169 AIGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEAD 228
Query: 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345
+ L L T+ I NDE + MKKG +VN+ARGG++D +A++ AL+SG + A+DV
Sbjct: 229 IVVLCCTLTKETAGIVNDEFLSSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDV 288
Query: 346 FTEEPPAKDSKLVQHENVTVTPHLGAST 373
EP D +++H NV +TPH+ T
Sbjct: 289 AWSEPFDPDDPILKHPNVIITPHVAGVT 316
|
Length = 347 |
| >gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 2e-41
Identities = 77/229 (33%), Positives = 128/229 (55%), Gaps = 4/229 (1%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
LK+ AG+G D+VDLQAA+E G V +N+++ AEH + ++ ++ RN +
Sbjct: 114 NLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA 173
Query: 213 KAGKWLRSKYVGVS--LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-APADKARA 269
G W + V S L G T+ ++G G++G V RR K + + D + P + +
Sbjct: 174 VEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHRLPEEVEQE 233
Query: 270 VGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G+ VSFD ++ D +++H PL+P T +F+ + ++MK+G +VN ARG ++D +A
Sbjct: 234 LGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDA 293
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
+VRAL+SG +A A DV+ +P D +TPH+ +T AQ
Sbjct: 294 VVRALESGHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQ 342
|
Length = 385 |
| >gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 2e-39
Identities = 94/287 (32%), Positives = 139/287 (48%), Gaps = 33/287 (11%)
Query: 117 YDLS--PEAL----CEKISQCDALIVRSGTKVTRSVFEAANGK-LKVVGRAGVGIDNVDL 169
YDL+ E L DA+IVR + E +K V VG +++DL
Sbjct: 25 YDLTLVEEYLNDENVHLAKGHDAVIVRGNCFADKENLEIYKEYGIKYVFTRTVGFNHIDL 84
Query: 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS-----QADASIKAGKWLRSKYVG 224
+AA E G + P + A AE L +++R+ + A+ + K ++ SK +
Sbjct: 85 EAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTAYTASRTANKNFKVDPFMFSKEIR 144
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 284
S VG ++G G++G A+ KGLG VI +D Y P+D A+ V V VS D+ L +
Sbjct: 145 NSTVG----IIGTGRIGLTAAKLFKGLGAKVIGYDIY-PSDAAKDV-VTFVSLDELLKKS 198
Query: 285 DFISLHMPLNP-TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343
D ISLH+P K+ N E +KMK G ++N ARG + DEEA++ AL+SG +A
Sbjct: 199 DIISLHVPYIKGKNDKLINKEFISKMKDGAILINTARGELQDEEAILEALESGKLAGFGT 258
Query: 344 DVFTEE-------------PPAKDSKLVQ-HENVTVTPHLGASTKEA 376
DV E KL+ + V +TPH+G+ T EA
Sbjct: 259 DVLNNEKEIFFKDFDGDKIEDPVVEKLLDLYPRVLLTPHIGSYTDEA 305
|
(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330 |
| >gnl|CDD|177941 PLN02306, PLN02306, hydroxypyruvate reductase | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-39
Identities = 111/324 (34%), Positives = 163/324 (50%), Gaps = 31/324 (9%)
Query: 129 SQCDALIVRSGTKVTRSVFEAANGKLKVVGRA----GVGIDNVDLQAATEFGCLVVNAPI 184
+CD +I + ++F A + K G+A VG +NVD++AA ++G V N P
Sbjct: 61 DKCDGVIGQLTEDWGETLFSALS---KAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPG 117
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGK---WLRSKYVGVSLVGKTLAVMGFGKVG 241
T AE +L + AR + +AD ++AG WL +VG L G+T+ V+G G++G
Sbjct: 118 VLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIGAGRIG 177
Query: 242 SEVARR-AKGLGMNVIAHDPY----------APADKARAVGVELV------SFDQALATA 284
S AR +G MN+I +D Y A +A G + V S ++ L A
Sbjct: 178 SAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREA 237
Query: 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344
D ISLH L+ TT + N E A MKK +VN +RG VIDE ALV L + + + LD
Sbjct: 238 DVISLHPVLDKTTYHLINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLD 297
Query: 345 VFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN-- 402
VF +EP K L +N V PH+ +++K +EG+A A V+G L+G N
Sbjct: 298 VFEDEPYMKPG-LADMKNAVVVPHIASASKWTREGMATLAALNVLGKLKGYPVWGDPNRV 356
Query: 403 APMV-PSEVLSELAPYVVLAKKLG 425
P + + +P +V AK LG
Sbjct: 357 EPFLNENAPPPAASPSIVNAKALG 380
|
Length = 386 |
| >gnl|CDD|240641 cd12164, GDH_like_2, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 3e-37
Identities = 77/256 (30%), Positives = 115/256 (44%), Gaps = 30/256 (11%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA------AEHGIALLASMA--RN 204
LK + G G+D++ + PI V AE+ L A + R+
Sbjct: 58 NLKAIFSLGAGVDHLLADPDLP------DVPIVRLVDPGLAQGMAEY--VLAAVLRLHRD 109
Query: 205 VSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ + A + G W + + V+G G++G+ VARR LG V ++ +
Sbjct: 110 MDRYAAQQRRGVWKPLPQRPAAER--RVGVLGLGELGAAVARRLAALGFPVSG---WSRS 164
Query: 265 DKARAVGVELVS----FDQALATADF-ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
K GV D LA D + L +PL P T I N E A++ +G ++NV
Sbjct: 165 PKDIE-GVTCFHGEEGLDAFLAQTDILVCL-LPLTPETRGILNAELLARLPRGAALINVG 222
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG + E L+ ALDSG ++ A LDVF +EP D L +H VTVTPH+ A+ +
Sbjct: 223 RGPHLVEADLLAALDSGHLSGAVLDVFEQEPLPADHPLWRHPRVTVTPHI-AAITDPDSA 281
Query: 380 VAIEIAEAVVGALRGE 395
A +AE + GE
Sbjct: 282 AAQ-VAENIRRLEAGE 296
|
This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 306 |
| >gnl|CDD|240657 cd12180, 2-Hacid_dh_15, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 139 bits (351), Expect = 1e-36
Identities = 71/205 (34%), Positives = 109/205 (53%), Gaps = 10/205 (4%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIK-AGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243
A AE +A + + A+ + + +K A +W R SL G TL ++GFG +G
Sbjct: 94 VAAEAIAEFVLAAILAAAKRL--PEIWVKGAEQWRREP--LGSLAGSTLGIVGFGAIGQA 149
Query: 244 VARRAKGLGMNVIA-HDPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIF 301
+ARRA LGM V+A P+D GVE + + A +D + L PL P T +
Sbjct: 150 LARRALALGMRVLALRRSGRPSD---VPGVEAAADLAELFARSDHLVLAAPLTPETRHLI 206
Query: 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
N + A+ K G+ ++N+ARGG++D+EAL+ ALDSG ++ A+LDV EP + L H
Sbjct: 207 NADVLAQAKPGLHLINIARGGLVDQEALLEALDSGRISLASLDVTDPEPLPEGHPLYTHP 266
Query: 362 NVTVTPHLGASTKEAQEGVAIEIAE 386
V ++PH A + + +A E
Sbjct: 267 RVRLSPHTSAIAPDGRRNLADRFLE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 308 |
| >gnl|CDD|166874 PRK00257, PRK00257, erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 134 bits (338), Expect = 3e-34
Identities = 87/304 (28%), Positives = 137/304 (45%), Gaps = 39/304 (12%)
Query: 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
A + D L+VRS T+V R++ E + +++ VG +G D++DL E G
Sbjct: 29 AFDRAA----VRDADVLLVRSVTRVDRALLEGS--RVRFVGTCTIGTDHLDLDYFAEAGI 82
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
+AP N ++ + L ++A GV L +T V+G
Sbjct: 83 TWSSAPGCNARGVVDYVLGSLLTLAE--------------RE----GVDLAERTYGVVGA 124
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT- 296
G VG + R +GLG V+ DP P +A G + VS ++ L D ISLH PL
Sbjct: 125 GHVGGRLVRVLRGLGWKVLVCDP--PRQEAEGDG-DFVSLERILEECDVISLHTPLTKEG 181
Query: 297 ---TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK 353
T + ++ A ++ G ++N +RG V+D +AL AL SG A LDV+ EP
Sbjct: 182 EHPTRHLLDEAFLASLRPGAWLINASRGAVVDNQALREALLSGEDLDAVLDVWEGEPQI- 240
Query: 354 DSKLVQHENVTV-TPHL-GASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVL 411
D +L T+ TPH+ G S G A +I +A+ + A ++P L
Sbjct: 241 DLELADL--CTIATPHIAGYSLDGKARGTA-QIYQALCRFFG--IPARVSLTDLLPPPWL 295
Query: 412 SELA 415
+++
Sbjct: 296 AQID 299
|
Length = 381 |
| >gnl|CDD|178684 PLN03139, PLN03139, formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 4e-32
Identities = 72/228 (31%), Positives = 113/228 (49%), Gaps = 4/228 (1%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
L+++ AG+G D++DL AA G V +N V+ AE + + + RN +
Sbjct: 122 LELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVV 181
Query: 214 AGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV 270
+G+W + Y L GKT+ +G G++G + +R K N++ HD + +
Sbjct: 182 SGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLKMDPELEKET 241
Query: 271 GVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
G + D L D + ++ PL T +FN E AKMKKGV IVN ARG ++D +A+
Sbjct: 242 GAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAV 301
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377
A SG + DV+ +P KD N +TPH+ +T +AQ
Sbjct: 302 ADACSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQ 349
|
Length = 386 |
| >gnl|CDD|181499 PRK08605, PRK08605, D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 3e-31
Identities = 77/268 (28%), Positives = 137/268 (51%), Gaps = 24/268 (8%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
+K + + G D DL+ AT++ ++ N P + + AE + ++ R+ +Q ++
Sbjct: 70 IKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVR 129
Query: 214 AG--KW---LRSKYVGVSLVGKTLAVMGFGKVGSEVAR-RAKGLGMNVIAHDPYAPADKA 267
+W + S+ S+ +AV+G G++G VA+ AKG G +V+A+DP+ P KA
Sbjct: 130 EHDFRWEPPILSR----SIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPF-PNAKA 184
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ ++A+ AD ++LHMP +FN + F KKG VN ARG ++D +
Sbjct: 185 ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGSLVDTK 244
Query: 328 ALVRALDSGVVAQAALDVFTEEPP--AKDSK-----------LVQHENVTVTPHLGASTK 374
AL+ ALD+G++ AALD + E P D + L+ E+V +TPH+ T
Sbjct: 245 ALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTD 304
Query: 375 EAQEGVAIEIAEAVVGALRGELSATAIN 402
A + + ++ +A + L+ + +N
Sbjct: 305 AAVKNLIVDALDATLEVLQTGTTRLRVN 332
|
Length = 332 |
| >gnl|CDD|240636 cd12159, 2-Hacid_dh_2, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 3e-30
Identities = 72/216 (33%), Positives = 99/216 (45%), Gaps = 13/216 (6%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLV----GKTLAVMGFGKV 240
A TVA EH +ALL + R + A +A W LV G T+A++G G +
Sbjct: 84 AETVA--EHALALLLAGLRQLP---ARARATTW--DPAEEDDLVTLLRGSTVAIVGAGGI 136
Query: 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299
G + G VIA + P + A V D+ AD + L PL P T
Sbjct: 137 GRALIPLLAPFGAKVIAVNRSGRPVEGADET-VPADRLDEVWPDADHVVLAAPLTPETRH 195
Query: 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ 359
+ + A MK +VNVARG ++D +ALV AL SG +A AALDV EP L
Sbjct: 196 LVDAAALAAMKPHAWLVNVARGPLVDTDALVDALRSGEIAGAALDVTDPEPLPDGHPLWS 255
Query: 360 HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395
N +TPH+ + + + +A +AE V GE
Sbjct: 256 LPNALITPHVANTPEVIRPLLAERVAENVRAFAAGE 291
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 303 |
| >gnl|CDD|240643 cd12166, 2-Hacid_dh_7, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 5e-30
Identities = 78/289 (26%), Positives = 125/289 (43%), Gaps = 22/289 (7%)
Query: 92 TILVSEKLGEAGLAILRSFGNVEC-LYDLSPEALCEKISQCDALIVR--SGTKVTRSVFE 148
T+LV + A L L VE ++D + + + ++ + V ++
Sbjct: 1 TVLVPDPELVAALGPLPP--GVEVVVWDGE-GPPPDAAADVEFVVPPYMAAPPVLEALRA 57
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L+VV G D V G + NA + + AE +AL+ + R + +
Sbjct: 58 LPR--LRVVQTLSAGYDGVLPLLPE--GVTLCNARGVHDASTAELAVALILASLRGLPRF 113
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
+ G+W SL + + ++G+G +G + RR + V A AR
Sbjct: 114 VRAQARGRWEPR--RTPSLADRRVLIVGYGSIGRAIERRLAPFEVRVTR-----VARTAR 166
Query: 269 AVGVELVSFDQA---LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
G ++ D+ L AD + L +PL T + + E A+M G +VNVARG V+D
Sbjct: 167 P-GEQVHGIDELPALLPEADVVVLIVPLTDETRGLVDAEFLARMPDGALLVNVARGPVVD 225
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
+ALV L SG + +AALDV EP L V +TPH+G +T
Sbjct: 226 TDALVAELASGRL-RAALDVTDPEPLPPGHPLWSAPGVLITPHVGGATP 273
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 300 |
| >gnl|CDD|235800 PRK06436, PRK06436, glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 7e-28
Identities = 62/233 (26%), Positives = 115/233 (49%), Gaps = 9/233 (3%)
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
K K++ G+D++D+ E L NA A +++ AEH ALL + A+N+ + + ++
Sbjct: 49 KTKMIQSLSAGVDHIDVSGIPENVVLCSNAG-AYSISVAEHAFALLLAWAKNICENNYNM 107
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G + +S L K+L ++G+G +G VA AK GMN+ A Y + +
Sbjct: 108 KNGNFKQSPTK--LLYNKSLGILGYGGIGRRVALLAKAFGMNIYA---YTRSYVNDGISS 162
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ + + +DF+ + +PL T + N + + +KG+ I+NVAR V+D+ ++
Sbjct: 163 IYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDKNDMLNF 222
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
L + DV+ EP ++ +NV ++PH+ A+ +A
Sbjct: 223 LRNHNDKYYLSDVWWNEPIITETNP---DNVILSPHVAGGMSGEIMQPAVALA 272
|
Length = 303 |
| >gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 8e-28
Identities = 65/238 (27%), Positives = 117/238 (49%), Gaps = 18/238 (7%)
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
+K + + G D DL A + ++ N P + AE+ +++ + R + ++
Sbjct: 70 IKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQ 129
Query: 214 AG--KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
A W +++ + + T+A++G G++G+ A+ G G + A+D Y P +
Sbjct: 130 AHDFTW-QAEIMSKPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAY-PNKDLDFLT 187
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ S +A+ AD ISLH+P N + +F+ F +KKG +VN ARG VI+ L+
Sbjct: 188 YK-DSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGAVINTPDLIA 246
Query: 332 ALDSGVVAQAALDVFTEEPP-------AKD------SKLVQHENVTVTPHLGASTKEA 376
A++ G + AA+D + E KD +L++HE + VTPH+ + EA
Sbjct: 247 AVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEA 304
|
Length = 330 |
| >gnl|CDD|240640 cd12163, 2-Hacid_dh_5, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 1e-25
Identities = 65/246 (26%), Positives = 100/246 (40%), Gaps = 51/246 (20%)
Query: 178 LVVNAPIANTVAAAEHGIAL--------LASMARNVSQADASIKAGKWLRSKYV--GVSL 227
L + + A+ HG + L + + K W R +
Sbjct: 73 LYKDPEVPLCTASGIHGPQIAEWVIGTWLVLSHHFLQYIELQ-KEQTWGRRQEAYSVEDS 131
Query: 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAH----------------------DP----- 260
VGK + ++G+G +G + AR A+ LGM V A+ DP
Sbjct: 132 VGKRVGILGYGSIGRQTARLAQALGMEVYAYTRSPRPTPESRKDDGYIVPGTGDPDGSIP 191
Query: 261 ---YAPADKARAVGVELVSFDQALATA-DFISLHMPLNPTTSKIFNDETFAKM-KKGVRI 315
++ DKA S + L D + + +PL P T + E F + K+ +
Sbjct: 192 SAWFSGTDKA--------SLHEFLRQDLDLLVVSLPLTPATKHLLGAEEFEILAKRKTFV 243
Query: 316 VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKE 375
N+ARG ++D +ALV AL+SG + AALDV EP D L NV +TPH+ T+E
Sbjct: 244 SNIARGSLVDTDALVAALESGQIRGAALDVTDPEPLPADHPLWSAPNVIITPHVSWQTQE 303
Query: 376 AQEGVA 381
+
Sbjct: 304 YFDRAL 309
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 334 |
| >gnl|CDD|240637 cd12160, 2-Hacid_dh_3, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 65/214 (30%), Positives = 102/214 (47%), Gaps = 17/214 (7%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKW---------LRSKYVGVSLVGKTLAVMGFGKVG 241
AEH +AL+ + R + + + + +W LR +L+G + + GFG +G
Sbjct: 96 AEHTLALILAAVRRLDEMREAQREHRWAGELGGLQPLRPAGRLTTLLGARVLIWGFGSIG 155
Query: 242 SEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQ---ALATADFISLHMPLNPTTS 298
+A LG V A + RA G +V+ D+ L D + + +P P+T+
Sbjct: 156 QRLAPLLTALGARVT---GVARSAGERA-GFPVVAEDELPELLPETDVLVMILPATPSTA 211
Query: 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLV 358
+ E A + K +VNV RG +DE+ALV AL+SG + AALDV EP S L
Sbjct: 212 HALDAEVLAALPKHAWVVNVGRGATVDEDALVAALESGRLGGAALDVTATEPLPASSPLW 271
Query: 359 QHENVTVTPHL-GASTKEAQEGVAIEIAEAVVGA 391
N+ +TPH G + A+E +A + + G
Sbjct: 272 DAPNLILTPHAAGGRPQGAEELIAENLRAFLAGG 305
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310 |
| >gnl|CDD|240631 cd12154, FDH_GDH_like, Formate/glycerate dehydrogenases, D-specific 2-hydroxy acid dehydrogenases and related dehydrogenases | Back alignment and domain information |
|---|
Score = 93.8 bits (233), Expect = 5e-21
Identities = 59/264 (22%), Positives = 88/264 (33%), Gaps = 28/264 (10%)
Query: 127 KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL-QAATEFGCLVVNAP-- 183
+ D ++ +++ +G D+ DL +A G +
Sbjct: 61 ALWSLDVVLKVKEPLTNAEYALIQKLGDRLLFTYTIGADHRDLTEALARAGLTAIAVEGV 120
Query: 184 -----IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG 238
+N++ A E + +A + GKT+ V+G G
Sbjct: 121 ELPLLTSNSIGAGELSVQFIARFLEVQQPGRLGGAPD-----------VAGKTVVVVGAG 169
Query: 239 KVGSEVARRAKGLGMNVIAHD--PYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
VG E A+ +GLG V+ D A G + ++ALA AD I L
Sbjct: 170 VVGKEAAQMLRGLGAQVLITDINVEALEQLEELGGKNVEELEEALAEADVIVTTTLLPGK 229
Query: 297 TSKIFNDET-FAKMKKGVRIVNVARGGVIDEEALVR-ALDSGVVAQAALDVFTEEPPAKD 354
+ I E +MK G IVNVA G V +AL L+ G DV P
Sbjct: 230 RAGILVPEELVEQMKPGSVIVNVAVGAVGCVQALHTQLLEEGHGVVHYGDVNMPGPGC-- 287
Query: 355 SKLVQHENVTVTPHLGASTKEAQE 378
T L A+T A
Sbjct: 288 ---AMGVPWDATLRLAANTLPALV 308
|
The formate/glycerate dehydrogenase like family contains a diverse group of enzymes such as formate dehydrogenase (FDH), glycerate dehydrogenase (GDH), D-lactate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine hydrolase, that share a common 2-domain structure. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar domains of the alpha/beta Rossmann fold NAD+ binding form. The NAD(P) binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD(P) is bound, primarily to the C-terminal portion of the 2nd (internal) domain. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of a hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. Length = 310 |
| >gnl|CDD|153174 cd04902, ACT_3PGDH-xct, C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 5e-21
Identities = 26/71 (36%), Positives = 41/71 (57%)
Query: 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIG 619
+++ R D+PG+IGKVG ILGE +N+ M VGR +M + VDE + L+E+
Sbjct: 1 MLVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELR 60
Query: 620 KVPAIEEYTLL 630
+P I ++
Sbjct: 61 ALPGILSAKVV 71
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between identical domains in the asymmetric unit. How this asymmetry influences the mechanism of effector inhibition is still unknown. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 73 |
| >gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 3e-19
Identities = 76/267 (28%), Positives = 118/267 (44%), Gaps = 31/267 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA 185
+++ DAL+VRS TKV S+ A +K VG A G D+VD + G AP
Sbjct: 33 AQLADADALMVRSVTKVNESLL--AGKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGC 90
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +A E+ + L +A + D G SL +T+ ++G G VG +
Sbjct: 91 NAIAVVEYVFSSLLMLA----ERD--------------GFSLHDRTVGIVGVGNVGRRLQ 132
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPL---NPTTSKIFN 302
R + LG+ + DP R + S D+ + AD ++ H PL P +
Sbjct: 133 ARLEALGIKTLLCDP---PRADRGDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLA 189
Query: 303 DETF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
DE +K G ++N RG V+D AL+ L+ G LDV+ EP + + +
Sbjct: 190 DEKLIRSLKPGAILINACRGAVVDNTALLTCLNEGQKLSVVLDVWEGEP---ELNVELLK 246
Query: 362 NVTV-TPHLGASTKEAQEGVAIEIAEA 387
V + TPH+ T E + ++ EA
Sbjct: 247 KVDIGTPHIAGYTLEGKARGTTQVFEA 273
|
Length = 378 |
| >gnl|CDD|153151 cd04879, ACT_3PGDH-like, ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Score = 79.8 bits (198), Expect = 2e-18
Identities = 27/71 (38%), Positives = 39/71 (54%)
Query: 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIG 619
+L D PG+IGKVG ILGEH +N+ M VGR + M + VD ++ L+E+
Sbjct: 1 RLLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELK 60
Query: 620 KVPAIEEYTLL 630
+P I L+
Sbjct: 61 ALPGIIRVRLI 71
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent-exposed active site cleft. This CD also includes the C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillus, and Treponema species. LSD enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in E. coli, and other Enterobacteriales, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|185366 PRK15469, ghrA, bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-16
Identities = 57/169 (33%), Positives = 89/169 (52%), Gaps = 10/169 (5%)
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHD---PYAPADKARAVGVELVSFDQALATADFI 287
T+ ++G G +GS+VA+ + G + P ++ A EL +F T I
Sbjct: 138 TIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFLSQ--TRVLI 195
Query: 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347
+L +P P T I N + ++ G ++N+ARG + E+ L+ ALDSG V A LDVF+
Sbjct: 196 NL-LPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFS 254
Query: 348 EEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE-IAEAVVGALRGE 395
EP +S L QH V +TPH+ A T+ A+ A+E I+ + +GE
Sbjct: 255 REPLPPESPLWQHPRVAITPHVAAVTRPAE---AVEYISRTIAQLEKGE 300
|
Length = 312 |
| >gnl|CDD|153175 cd04903, ACT_LSD, C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 3e-13
Identities = 25/71 (35%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIG 619
LI+ + D+PG I KV ++L +H +N+ FM V R + + +M I VD+ +++ ++EI
Sbjct: 2 LIVVHK-DKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIK 60
Query: 620 KVPAIEEYTLL 630
K+P I + L+
Sbjct: 61 KIPNIHQVILI 71
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. Length = 71 |
| >gnl|CDD|198065 smart00997, AdoHcyase_NAD, S-adenosyl-L-homocysteine hydrolase, NAD binding domain | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 4e-09
Identities = 33/103 (32%), Positives = 46/103 (44%), Gaps = 19/103 (18%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV-----GVELVSFD 278
V L GK + V G+G VG VA R +GLG VI + D RA+ G E++ +
Sbjct: 18 NVLLAGKNVVVAGYGDVGKGVAARLRGLGARVIVTE----IDPIRALEAAMDGFEVMKME 73
Query: 279 QALATAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
+A AD F++ T + E F MK G + N
Sbjct: 74 EAAKRADIFVT-------ATGNKDVITREHFRAMKDGAILANA 109
|
Length = 162 |
| >gnl|CDD|240647 cd12170, 2-Hacid_dh_9, Putative D-isomer specific 2-hydroxyacid dehydrogenases | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 6e-08
Identities = 67/290 (23%), Positives = 107/290 (36%), Gaps = 29/290 (10%)
Query: 98 KLGEAGLAILRSFGNVECLYDLSP---EALCEKISQCDALIVRSGTKVTRSVFEAANGKL 154
L E L+ + YD P E + E+I D ++V T++ V EA +
Sbjct: 11 GLNEEAEEELKKYAEEVVFYDDIPESDEEIIERIGDADCVLVSYTTQIDEEVLEACP-NI 69
Query: 155 KVVGRAGVGID----NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADA 210
K +G NVD+ AA E G V E+ I+ L +
Sbjct: 70 KYIGMCCSLYSEESANVDIAAARENGITVTGIRDYGDEGVVEYVISELIRLLHGFGGK-- 127
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--AR 268
+W K L G + ++G G G +A G +V Y+ K A
Sbjct: 128 -----QW---KEEPRELTGLKVGIIGLGTTGQMIADALSFFGADVYY---YSRTRKPDAE 176
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
A G+ + ++ L T D I +P N + +E F + G + N + G + EA
Sbjct: 177 AKGIRYLPLNELLKTVDVICTCLPKN---VILLGEEEFELLGDGKILFNTSLGPSFEVEA 233
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQE 378
L + L + D D +L+++ NV T T++A E
Sbjct: 234 LKKWLKASGYNIFDCD---TAGALGDEELLRYPNVICTNKSAGWTRQAFE 280
|
2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 294 |
| >gnl|CDD|235488 PRK05476, PRK05476, S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 1e-06
Identities = 29/97 (29%), Positives = 44/97 (45%), Gaps = 14/97 (14%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK + V G+G VG A+R +GLG VI DP A +A G +++ ++A
Sbjct: 208 VLIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPIC-ALQAAMDGFRVMTMEEAAE 266
Query: 283 TAD-FISLHMPLNPTTS--KIFNDETFAKMKKGVRIV 316
D F++ T + E MK G I+
Sbjct: 267 LGDIFVT-------ATGNKDVITAEHMEAMKDGA-IL 295
|
Length = 425 |
| >gnl|CDD|223573 COG0499, SAM1, S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-06
Identities = 32/99 (32%), Positives = 47/99 (47%), Gaps = 15/99 (15%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V L GK + V G+G VG +A R +G+G VI DP A +A G +++ ++A
Sbjct: 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAK 263
Query: 283 TAD-FISLHMPLNPTTS---KIFNDETFAKMKKGVRIVN 317
T D F+ T + + E F KMK G + N
Sbjct: 264 TGDIFV--------TATGNKDVIRKEHFEKMKDGAILAN 294
|
Length = 420 |
| >gnl|CDD|153139 cd02116, ACT, ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 7e-06
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
D+PG++ KV ++L E +N+ + + + I VD + + + L E
Sbjct: 7 DRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLE 57
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-prephenate dehydratase enzyme (P-protein), respectively. Aspartokinases typically consist of two C-terminal ACT domains in a tandem repeat, but the second ACT domain is inserted within the first, resulting in, what is normally the terminal beta strand of ACT2, formed from a region N-terminal of ACT1. ACT domain repeats have been shown to have nonequivalent ligand-binding sites with complex regulatory patterns such as those seen in the bifunctional enzyme, aspartokinase-homoserine dehydrogenase (ThrA). In other enzymes, such as phenylalanine hydroxylases, the ACT domain appears to function as a flexible small module providing allosteric regulation via transmission of conformational changes, these conformational changes are not necessarily initiated by regulatory ligand binding at the ACT domain itself. ACT domains are present either singularly, N- or C-terminal, or in pairs present C-terminal or between two catalytic domains. Unique to cyanobacteria are four ACT domains C-terminal to an aspartokinase domain. A few proteins are composed almost entirely of ACT domain repeats as seen in the four ACT domain protein, the ACR protein, found in higher plants; and the two ACT domain protein, the glycine cleavage system transcriptional repressor (GcvR) protein, found in some bacteria. Also seen are single ACT domain proteins similar to the Streptococcus pneumoniae ACT domain protein (uncharacterized pdb structure 1ZPV) found in both bacteria and archaea. Purportedly, the ACT domain is an evolutionarily mobile ligand binding regulatory module that has been fused to different enzymes at various times. Length = 60 |
| >gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and catalytic domains | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-05
Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK + V G+G VG A RA+GLG VI DP A +A G E++ ++A
Sbjct: 191 VLIAGKVVVVAGYGWVGKGCAMRARGLGARVIVTEVDPIC-ALQAAMDGFEVMPMEEAAK 249
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVN 317
D F++ T + E F KMK G + N
Sbjct: 250 IGDIFVT-------ATGNKDVIRGEHFEKMKDGAILCN 280
|
S-adenosyl-L-homocysteine hydrolase (SAHH, AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homotetramers, with each monomer binding one molecule of NAD+. Length = 402 |
| >gnl|CDD|213572 TIGR00936, ahcY, adenosylhomocysteinase | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 14/109 (12%)
Query: 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATA 284
+ GKT+ V G+G G +A RA+G+G VI DP A +A G +++ ++A
Sbjct: 194 IAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP-IRALEAAMDGFRVMTMEEAAKIG 252
Query: 285 D-FISLHMPLNPTTS--KIFNDETFAKMKKGVRIVNVARGGV-IDEEAL 329
D FI+ T + E F MK G + N+ V ID +AL
Sbjct: 253 DIFIT-------ATGNKDVIRGEHFENMKDGAIVANIGHFDVEIDVKAL 294
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704) [Energy metabolism, Amino acids and amines]. Length = 407 |
| >gnl|CDD|190133 pfam01842, ACT, ACT domain | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 7e-05
Identities = 13/64 (20%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGI-MAIGVDEEPNQDSLKEIG 619
+ D+PG++ +V L + +N+ +S + + + + + VDEE + +L+ +
Sbjct: 3 LEVGVPDRPGLLAEVFGALADRGINIESISQSTSGDKAGIVFIVVVVDEEDLEAALEALK 62
Query: 620 KVPA 623
K+
Sbjct: 63 KLLG 66
|
This family of domains generally have a regulatory role. ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. The ACT domain is found in: D-3-phosphoglycerate dehydrogenase EC:1.1.1.95, which is inhibited by serine. Aspartokinase EC:2.7.2.4, which is regulated by lysine. Acetolactate synthase small regulatory subunit, which is inhibited by valine. Phenylalanine-4-hydroxylase EC:1.14.16.1, which is regulated by phenylalanine. Prephenate dehydrogenase EC:4.2.1.51. formyltetrahydrofolate deformylase EC:3.5.1.10, which is activated by methionine and inhibited by glycine. GTP pyrophosphokinase EC:2.7.6.5. Length = 66 |
| >gnl|CDD|133450 cd05211, NAD_bind_Glu_Leu_Phe_Val, NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 35/130 (26%), Positives = 54/130 (41%), Gaps = 11/130 (8%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELVSFDQ 279
K++G SL G T+AV G G VG +A++ G V+A DP EL+++
Sbjct: 15 KHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAV 74
Query: 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339
AL + + + + A G VID E + L + VVA
Sbjct: 75 ALGGSA-------RVKVQDYFPGEAIL-GLDVDI-FAPCALGNVIDLEN-AKKLKAKVVA 124
Query: 340 QAALDVFTEE 349
+ A + T+E
Sbjct: 125 EGANNPTTDE 134
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parrallel to the others. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha-beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 217 |
| >gnl|CDD|133445 cd01076, NAD_bind_1_Glu_DH, NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K +G+ L G +A+ GFG VGS AR G V+A
Sbjct: 23 KKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVA 59
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an alpha -beta-alpha configuration. NAD binding involves numerous hydrogen and van der Waals contacts. Length = 227 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 656 | |||
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 100.0 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| KOG0068 | 406 | consensus D-3-phosphoglycerate dehydrogenase, D-is | 100.0 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 100.0 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 100.0 | |
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 100.0 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 100.0 | |
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 100.0 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 100.0 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 100.0 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 100.0 | |
| PLN02928 | 347 | oxidoreductase family protein | 100.0 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 100.0 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 100.0 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 100.0 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 100.0 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 100.0 | |
| KOG0069 | 336 | consensus Glyoxylate/hydroxypyruvate reductase (D- | 100.0 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 100.0 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 100.0 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 100.0 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 100.0 | |
| TIGR00719 | 208 | sda_beta L-serine dehydratase, iron-sulfur-depende | 100.0 | |
| KOG0067 | 435 | consensus Transcription factor CtBP [Transcription | 99.97 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.92 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.86 | |
| PF00389 | 133 | 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr | 99.86 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 99.84 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 99.78 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.63 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 99.57 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.57 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.56 | |
| PLN02494 | 477 | adenosylhomocysteinase | 99.54 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.52 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.51 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.46 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 99.46 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 99.45 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.4 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 99.31 | |
| COG1760 | 262 | SdaA L-serine deaminase [Amino acid transport and | 99.3 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.27 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.24 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 99.24 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.24 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 99.23 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.23 | |
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 99.22 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 99.14 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 99.11 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 99.03 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 99.02 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.02 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 99.01 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 98.93 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 98.91 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 98.88 | |
| cd04902 | 73 | ACT_3PGDH-xct C-terminal ACT (regulatory) domain o | 98.84 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 98.83 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.79 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 98.78 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 98.77 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.76 | |
| KOG0409 | 327 | consensus Predicted dehydrogenase [General functio | 98.75 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 98.75 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.75 | |
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 98.75 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.74 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 98.73 | |
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 98.72 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 98.71 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.69 | |
| PF03315 | 157 | SDH_beta: Serine dehydratase beta chain; InterPro: | 98.67 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 98.63 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.56 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 98.55 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 98.55 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 98.54 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 98.53 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.52 | |
| cd04901 | 69 | ACT_3PGDH C-terminal ACT (regulatory) domain of D- | 98.52 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.5 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.46 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.46 | |
| KOG1370 | 434 | consensus S-adenosylhomocysteine hydrolase [Coenzy | 98.45 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 98.45 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 98.43 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.42 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 98.4 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 98.4 | |
| PRK15040 | 454 | L-serine dehydratase TdcG; Provisional | 98.39 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 98.39 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.39 | |
| cd04879 | 71 | ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te | 98.38 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 98.37 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 98.36 | |
| cd04903 | 71 | ACT_LSD C-terminal ACT domain of the L-serine dehy | 98.36 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 98.32 | |
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 98.31 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 98.3 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 98.27 | |
| PRK15023 | 454 | L-serine deaminase; Provisional | 98.24 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 98.23 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.22 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.22 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 98.2 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 98.19 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.19 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 98.18 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 98.18 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 98.17 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 98.17 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 98.15 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.15 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.14 | |
| PF01842 | 66 | ACT: ACT domain; InterPro: IPR002912 The ACT domai | 98.14 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 98.12 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 98.05 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 98.05 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 98.05 | |
| KOG2380 | 480 | consensus Prephenate dehydrogenase (NADP+) [Amino | 98.04 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.94 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 97.92 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 97.92 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 97.9 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 97.86 | |
| cd04878 | 72 | ACT_AHAS N-terminal ACT domain of the Escherichia | 97.85 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.83 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 97.82 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 97.82 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 97.8 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 97.79 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 97.79 | |
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 97.77 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 97.77 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 97.74 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.74 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 97.73 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 97.71 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 97.71 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 97.7 | |
| TIGR00720 | 455 | sda_mono L-serine dehydratase, iron-sulfur-depende | 97.7 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.68 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 97.66 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 97.66 | |
| TIGR01546 | 333 | GAPDH-II_archae glyceraldehyde-3-phosphate dehydro | 97.66 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.65 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 97.63 | |
| cd04874 | 72 | ACT_Af1403 N-terminal ACT domain of the yet unchar | 97.63 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 97.62 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 97.61 | |
| cd04889 | 56 | ACT_PDH-BS-like C-terminal ACT domain of the monof | 97.6 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 97.58 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.57 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 97.57 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.57 | |
| PF13291 | 80 | ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. | 97.56 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.55 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 97.55 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.53 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 97.51 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 97.5 | |
| PRK08577 | 136 | hypothetical protein; Provisional | 97.5 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 97.48 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.45 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 97.38 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.38 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 97.37 | |
| PRK13562 | 84 | acetolactate synthase 1 regulatory subunit; Provis | 97.37 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.35 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.35 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 97.33 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.33 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.32 | |
| cd04908 | 66 | ACT_Bt0572_1 N-terminal ACT domain of a novel prot | 97.31 | |
| cd04888 | 76 | ACT_PheB-BS C-terminal ACT domain of a small (~147 | 97.3 | |
| cd04882 | 65 | ACT_Bt0572_2 C-terminal ACT domain of a novel prot | 97.3 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.3 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.29 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.28 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 97.27 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.27 | |
| cd04883 | 72 | ACT_AcuB C-terminal ACT domain of the Bacillus sub | 97.27 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.26 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 97.26 | |
| PRK08178 | 96 | acetolactate synthase 1 regulatory subunit; Review | 97.26 | |
| cd04881 | 79 | ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin | 97.26 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.26 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 97.25 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.25 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 97.24 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.23 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 97.23 | |
| PRK11152 | 76 | ilvM acetolactate synthase 2 regulatory subunit; P | 97.23 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.23 | |
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.22 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 97.21 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 97.21 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.2 | |
| PRK06737 | 76 | acetolactate synthase 1 regulatory subunit; Valida | 97.18 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 97.14 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.14 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 97.13 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 97.09 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 97.08 | |
| PF13241 | 103 | NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_ | 97.05 | |
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 97.04 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 97.01 | |
| PRK11895 | 161 | ilvH acetolactate synthase 3 regulatory subunit; R | 97.0 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.0 | |
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 96.99 | |
| TIGR00119 | 157 | acolac_sm acetolactate synthase, small subunit. ac | 96.98 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.96 | |
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.95 | |
| PRK14031 | 444 | glutamate dehydrogenase; Provisional | 96.95 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 96.95 | |
| cd04877 | 74 | ACT_TyrR N-terminal ACT domain of the TyrR protein | 96.93 | |
| PRK00194 | 90 | hypothetical protein; Validated | 96.93 | |
| cd05313 | 254 | NAD_bind_2_Glu_DH NAD(P) binding domain of glutama | 96.92 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 96.9 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.89 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 96.88 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.85 | |
| cd04887 | 74 | ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te | 96.85 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 96.84 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 96.81 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 96.81 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.78 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 96.75 | |
| PF13710 | 63 | ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. | 96.75 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 96.75 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 96.72 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 96.71 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.69 | |
| PRK09414 | 445 | glutamate dehydrogenase; Provisional | 96.68 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 96.65 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 96.64 | |
| COG2150 | 167 | Predicted regulator of amino acid metabolism, cont | 96.61 | |
| PRK14030 | 445 | glutamate dehydrogenase; Provisional | 96.6 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 96.6 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 96.59 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.58 | |
| CHL00100 | 174 | ilvH acetohydroxyacid synthase small subunit | 96.58 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 96.58 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 96.54 | |
| cd04876 | 71 | ACT_RelA-SpoT ACT domain found C-terminal of the R | 96.54 | |
| cd04869 | 81 | ACT_GcvR_2 ACT domains that comprise the Glycine C | 96.52 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.51 | |
| PLN02477 | 410 | glutamate dehydrogenase | 96.51 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 96.49 | |
| cd04909 | 69 | ACT_PDH-BS C-terminal ACT domain of the monofuncti | 96.49 | |
| TIGR00670 | 301 | asp_carb_tr aspartate carbamoyltransferase. Ornith | 96.47 | |
| PRK04435 | 147 | hypothetical protein; Provisional | 96.47 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 96.46 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.46 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.46 | |
| cd04893 | 77 | ACT_GcvR_1 ACT domains that comprise the Glycine C | 96.45 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.41 | |
| PRK00676 | 338 | hemA glutamyl-tRNA reductase; Validated | 96.4 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.4 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 96.36 | |
| cd04875 | 74 | ACT_F4HF-DF N-terminal ACT domain of formyltetrahy | 96.33 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 96.32 | |
| PRK00779 | 304 | ornithine carbamoyltransferase; Provisional | 96.28 | |
| PRK01713 | 334 | ornithine carbamoyltransferase; Provisional | 96.28 | |
| cd04870 | 75 | ACT_PSP_1 CT domains found N-terminal of phosphose | 96.26 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.25 | |
| cd04884 | 72 | ACT_CBS C-terminal ACT domain of the cystathionine | 96.22 | |
| TIGR00658 | 304 | orni_carb_tr ornithine carbamoyltransferase. Most | 96.18 | |
| cd04886 | 73 | ACT_ThrD-II-like C-terminal ACT domain of biodegra | 96.15 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 96.13 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 96.12 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 96.1 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 96.09 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 96.08 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 96.07 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 96.07 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 96.06 | |
| PLN02527 | 306 | aspartate carbamoyltransferase | 96.06 | |
| PF00185 | 158 | OTCace: Aspartate/ornithine carbamoyltransferase, | 96.03 | |
| KOG2304 | 298 | consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid t | 96.01 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.0 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 95.93 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 95.92 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 95.91 | |
| PF13740 | 76 | ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. | 95.91 | |
| PF00208 | 244 | ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Val | 95.9 | |
| PTZ00079 | 454 | NADP-specific glutamate dehydrogenase; Provisional | 95.87 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.84 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 95.82 | |
| cd04926 | 72 | ACT_ACR_4 C-terminal ACT domain, of a novel type o | 95.82 | |
| PRK02255 | 338 | putrescine carbamoyltransferase; Provisional | 95.82 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 95.81 | |
| COG0334 | 411 | GdhA Glutamate dehydrogenase/leucine dehydrogenase | 95.8 | |
| PRK03515 | 336 | ornithine carbamoyltransferase subunit I; Provisio | 95.78 | |
| cd04872 | 88 | ACT_1ZPV ACT domain proteins similar to the yet un | 95.78 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 95.77 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.73 | |
| COG1707 | 218 | ACT domain-containing protein [General function pr | 95.73 | |
| KOG0023 | 360 | consensus Alcohol dehydrogenase, class V [Secondar | 95.72 | |
| PRK04284 | 332 | ornithine carbamoyltransferase; Provisional | 95.72 | |
| PRK00856 | 305 | pyrB aspartate carbamoyltransferase catalytic subu | 95.68 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 95.58 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 95.56 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 95.54 | |
| COG0026 | 375 | PurK Phosphoribosylaminoimidazole carboxylase (NCA | 95.53 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 95.5 | |
| PRK02102 | 331 | ornithine carbamoyltransferase; Validated | 95.5 | |
| PRK14804 | 311 | ornithine carbamoyltransferase; Provisional | 95.5 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 95.49 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.45 | |
| cd04905 | 80 | ACT_CM-PDT C-terminal ACT domain of the bifunction | 95.44 | |
| TIGR03316 | 357 | ygeW probable carbamoyltransferase YgeW. Members o | 95.43 | |
| PRK11891 | 429 | aspartate carbamoyltransferase; Provisional | 95.41 | |
| TIGR00655 | 280 | PurU formyltetrahydrofolate deformylase. This mode | 95.4 | |
| PRK13814 | 310 | pyrB aspartate carbamoyltransferase catalytic subu | 95.38 | |
| PLN02342 | 348 | ornithine carbamoyltransferase | 95.36 | |
| KOG2653 | 487 | consensus 6-phosphogluconate dehydrogenase [Carboh | 95.36 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 95.3 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 95.26 | |
| COG1648 | 210 | CysG Siroheme synthase (precorrin-2 oxidase/ferroc | 95.25 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 95.25 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 95.19 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.18 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 95.17 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.15 | |
| PRK13010 | 289 | purU formyltetrahydrofolate deformylase; Reviewed | 95.14 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 95.14 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 95.12 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 95.11 | |
| PRK12562 | 334 | ornithine carbamoyltransferase subunit F; Provisio | 95.06 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 95.06 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 95.02 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 95.01 | |
| cd05312 | 279 | NAD_bind_1_malic_enz NAD(P) binding domain of mali | 94.99 | |
| COG0281 | 432 | SfcA Malic enzyme [Energy production and conversio | 94.98 | |
| cd00762 | 254 | NAD_bind_malic_enz NAD(P) binding domain of malic | 94.95 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.87 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.87 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 94.82 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.82 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 94.82 | |
| PRK02006 | 498 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.78 | |
| cd04873 | 70 | ACT_UUR-ACR-like ACT domains of the bacterial sign | 94.77 | |
| COG4747 | 142 | ACT domain-containing protein [General function pr | 94.74 | |
| PRK04523 | 335 | N-acetylornithine carbamoyltransferase; Reviewed | 94.74 | |
| cd04900 | 73 | ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, | 94.68 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.65 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 94.65 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 94.64 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 94.62 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 94.61 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 94.58 | |
| COG5322 | 351 | Predicted dehydrogenase [General function predicti | 94.57 | |
| COG0788 | 287 | PurU Formyltetrahydrofolate hydrolase [Nucleotide | 94.56 | |
| PRK06019 | 372 | phosphoribosylaminoimidazole carboxylase ATPase su | 94.55 | |
| PRK07232 | 752 | bifunctional malic enzyme oxidoreductase/phosphotr | 94.44 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 94.42 | |
| PRK06027 | 286 | purU formyltetrahydrofolate deformylase; Reviewed | 94.41 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 94.38 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 94.34 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 94.33 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 94.32 | |
| PRK12475 | 338 | thiamine/molybdopterin biosynthesis MoeB-like prot | 94.32 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 94.3 | |
| TIGR02964 | 246 | xanthine_xdhC xanthine dehydrogenase accessory pro | 94.27 | |
| cd04880 | 75 | ACT_AAAH-PDT-like ACT domain of the nonheme iron-d | 94.22 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 94.2 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.2 | |
| cd00757 | 228 | ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1 | 94.15 | |
| cd02116 | 60 | ACT ACT domains are commonly involved in specifica | 94.14 | |
| PRK07200 | 395 | aspartate/ornithine carbamoyltransferase family pr | 94.14 | |
| PRK12862 | 763 | malic enzyme; Reviewed | 94.12 | |
| cd04899 | 70 | ACT_ACR-UUR-like_2 C-terminal ACT domains of the b | 94.1 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 94.01 | |
| PRK13011 | 286 | formyltetrahydrofolate deformylase; Reviewed | 94.0 | |
| cd04925 | 74 | ACT_ACR_2 ACT domain-containing protein which is c | 93.96 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 93.86 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 93.72 | |
| PRK10637 | 457 | cysG siroheme synthase; Provisional | 93.72 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 93.69 | |
| PRK08192 | 338 | aspartate carbamoyltransferase; Provisional | 93.66 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 93.66 | |
| cd04928 | 68 | ACT_TyrKc Uncharacterized, N-terminal ACT domain o | 93.64 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 93.64 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 93.61 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 93.6 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 93.58 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 93.55 | |
| PRK05690 | 245 | molybdopterin biosynthesis protein MoeB; Provision | 93.46 | |
| PRK04308 | 445 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.45 | |
| PRK05562 | 223 | precorrin-2 dehydrogenase; Provisional | 93.3 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 93.27 | |
| PRK13376 | 525 | pyrB bifunctional aspartate carbamoyltransferase c | 93.25 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.21 | |
| COG3288 | 356 | PntA NAD/NADP transhydrogenase alpha subunit [Ener | 93.19 | |
| KOG0022 | 375 | consensus Alcohol dehydrogenase, class III [Second | 93.17 | |
| PRK04690 | 468 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 93.15 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 93.15 | |
| PLN02602 | 350 | lactate dehydrogenase | 93.1 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 93.08 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 93.07 | |
| TIGR01381 | 664 | E1_like_apg7 E1-like protein-activating enzyme Gsa | 93.04 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 93.02 | |
| PRK08762 | 376 | molybdopterin biosynthesis protein MoeB; Validated | 92.92 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 92.82 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 92.82 | |
| PRK03806 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.77 | |
| PLN02948 | 577 | phosphoribosylaminoimidazole carboxylase | 92.75 | |
| PRK12861 | 764 | malic enzyme; Reviewed | 92.7 | |
| COG0440 | 163 | IlvH Acetolactate synthase, small (regulatory) sub | 92.68 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.62 | |
| PF13478 | 136 | XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2 | 92.62 | |
| PRK10872 | 743 | relA (p)ppGpp synthetase I/GTP pyrophosphokinase; | 92.44 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 92.4 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 92.36 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 92.31 | |
| PF02629 | 96 | CoA_binding: CoA binding domain; InterPro: IPR0037 | 92.26 | |
| cd01486 | 307 | Apg7 Apg7 is an E1-like protein, that activates tw | 92.24 | |
| TIGR01532 | 325 | E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas | 92.19 | |
| PLN02586 | 360 | probable cinnamyl alcohol dehydrogenase | 92.1 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 92.03 | |
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.02 | |
| TIGR03201 | 349 | dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co | 92.02 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 92.01 | |
| TIGR01161 | 352 | purK phosphoribosylaminoimidazole carboxylase, Pur | 91.93 | |
| TIGR02355 | 240 | moeB molybdopterin synthase sulfurylase MoeB. This | 91.92 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 91.91 | |
| PRK14805 | 302 | ornithine carbamoyltransferase; Provisional | 91.81 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 91.77 | |
| TIGR01772 | 312 | MDH_euk_gproteo malate dehydrogenase, NAD-dependen | 91.72 | |
| COG3830 | 90 | ACT domain-containing protein [Signal transduction | 91.71 | |
| PRK03815 | 401 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.69 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 91.58 | |
| PRK01368 | 454 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.56 | |
| cd04927 | 76 | ACT_ACR-like_2 Second ACT domain, of a novel type | 91.55 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 91.49 | |
| COG2716 | 176 | GcvR Glycine cleavage system regulatory protein [A | 91.47 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 91.42 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 91.36 | |
| PRK08644 | 212 | thiamine biosynthesis protein ThiF; Provisional | 91.32 | |
| PTZ00325 | 321 | malate dehydrogenase; Provisional | 91.27 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 91.13 | |
| PRK05597 | 355 | molybdopterin biosynthesis protein MoeB; Validated | 91.11 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 91.1 | |
| COG0078 | 310 | ArgF Ornithine carbamoyltransferase [Amino acid tr | 91.09 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 91.01 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 91.0 | |
| cd04896 | 75 | ACT_ACR-like_3 ACT domain-containing protein which | 90.99 | |
| PLN02178 | 375 | cinnamyl-alcohol dehydrogenase | 90.98 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 90.95 | |
| PRK11589 | 190 | gcvR glycine cleavage system transcriptional repre | 90.9 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 90.62 | |
| cd04885 | 68 | ACT_ThrD-I Tandem C-terminal ACT domains of threon | 90.58 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 90.58 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 90.51 | |
| cd05283 | 337 | CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam | 90.5 | |
| PRK07877 | 722 | hypothetical protein; Provisional | 90.49 | |
| PRK05600 | 370 | thiamine biosynthesis protein ThiF; Validated | 90.45 | |
| PRK12809 | 639 | putative oxidoreductase Fe-S binding subunit; Revi | 90.44 | |
| PRK12769 | 654 | putative oxidoreductase Fe-S binding subunit; Revi | 90.43 | |
| cd01337 | 310 | MDH_glyoxysomal_mitochondrial Glyoxysomal and mito | 90.43 | |
| cd04895 | 72 | ACT_ACR_1 ACT domain-containing protein which is c | 90.41 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 90.34 | |
| PRK08223 | 287 | hypothetical protein; Validated | 90.31 | |
| COG0540 | 316 | PyrB Aspartate carbamoyltransferase, catalytic cha | 90.31 | |
| PRK11092 | 702 | bifunctional (p)ppGpp synthetase II/ guanosine-3', | 90.14 | |
| PRK14573 | 809 | bifunctional D-alanyl-alanine synthetase A/UDP-N-a | 90.13 | |
| PRK02705 | 459 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.12 | |
| PLN02740 | 381 | Alcohol dehydrogenase-like | 90.11 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 89.96 | |
| PLN02272 | 421 | glyceraldehyde-3-phosphate dehydrogenase | 89.94 | |
| PRK06382 | 406 | threonine dehydratase; Provisional | 89.88 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 89.74 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 89.7 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 89.69 | |
| PLN00106 | 323 | malate dehydrogenase | 89.66 | |
| PRK04663 | 438 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.61 | |
| cd05290 | 307 | LDH_3 A subgroup of L-lactate dehydrogenases. L-la | 89.59 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 89.54 | |
| cd04906 | 85 | ACT_ThrD-I_1 First of two tandem C-terminal ACT do | 89.53 | |
| KOG2663 | 309 | consensus Acetolactate synthase, small subunit [Am | 89.51 | |
| cd01338 | 322 | MDH_choloroplast_like Chloroplast-like malate dehy | 89.49 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 89.42 | |
| PRK08664 | 349 | aspartate-semialdehyde dehydrogenase; Reviewed | 89.38 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 89.29 | |
| TIGR00691 | 683 | spoT_relA (p)ppGpp synthetase, RelA/SpoT family. ( | 89.04 | |
| PRK06392 | 326 | homoserine dehydrogenase; Provisional | 88.97 | |
| cd08296 | 333 | CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci | 88.81 | |
| PRK12814 | 652 | putative NADPH-dependent glutamate synthase small | 88.59 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 88.55 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 88.47 | |
| TIGR01318 | 467 | gltD_gamma_fam glutamate synthase small subunit fa | 88.42 | |
| TIGR01759 | 323 | MalateDH-SF1 malate dehydrogenase. This model repr | 88.35 | |
| PRK12771 | 564 | putative glutamate synthase (NADPH) small subunit; | 88.33 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 88.23 |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-108 Score=927.29 Aligned_cols=522 Identities=44% Similarity=0.713 Sum_probs=493.0
Q ss_pred eEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 92 TILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 92 ~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
|||+++++.+..++.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||++
T Consensus 1 ~vli~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~ 79 (525)
T TIGR01327 1 KVLIADPISPDGIDILEDVGVEVDVQTGLSREELLEIIPDYDALIVRSATKVTEEVIAAA-PKLKVIGRAGVGVDNIDIE 79 (525)
T ss_pred CEEEeCCCCHHHHHHHHhcCcEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCcCHHHHhhC-CCceEEEECCcccchhcHH
Confidence 4889999999998888765 3666544567889999999999999998889999999988 5999999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
+|+++||.|+|+||+|+.+||||+++|||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|+||+.+|++|++
T Consensus 80 ~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l~~ 159 (525)
T TIGR01327 80 AATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTELYGKTLGVIGLGRIGSIVAKRAKA 159 (525)
T ss_pred HHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccccCCCEEEEECCCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999986677899999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006212 251 LGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 251 ~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL 329 (656)
|||+|++|||+.+.+.+...|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||
T Consensus 160 fG~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~~vde~aL 239 (525)
T TIGR01327 160 FGMKVLAYDPYISPERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGAEELAKMKKGVIIVNCARGGIIDEAAL 239 (525)
T ss_pred CCCEEEEECCCCChhHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCHHHHhcCCCCeEEEEcCCCceeCHHHH
Confidence 9999999999866666677788766 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChh
Q 006212 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSE 409 (656)
Q Consensus 330 ~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~ 409 (656)
+++|++|+|+||+||||+.||+ .++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.++++
T Consensus 240 ~~aL~~g~i~gAaLDVf~~EP~-~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~~ 318 (525)
T TIGR01327 240 YEALEEGHVRAAALDVFEKEPP-TDNPLFDLDNVIATPHLGASTREAQENVATQVAEQVLDALKGLPVPNAVNAPGIDAD 318 (525)
T ss_pred HHHHHcCCeeEEEEecCCCCCC-CCChhhcCCCeEECCCccccHHHHHHHHHHHHHHHHHHHHcCCCCCceeeCCCCCch
Confidence 9999999999999999999996 589999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccC
Q 006212 410 VLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKG 489 (656)
Q Consensus 410 ~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~G 489 (656)
.++.++||+.||+|||++++||+++ .+++++++|+||++ . ++++++++|+++|+|+...++++|++||+.+|||+|
T Consensus 319 ~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~GsfA-~-~~~~~~~~a~l~GlL~~~~~~d~~~~nA~~iA~e~G 394 (525)
T TIGR01327 319 VMEKLKPYLDLAEKLGKLAGQLLDG--AVQSVEVTYRGELA-T-ENSEPLTRAALKGLLSPVLDDEVNMVNAPAVAKERG 394 (525)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcCC--CceEEEEEEEcchh-c-ccccHHHHHHHHHhCccccCCCccccCHHHHHHHcC
Confidence 9999999999999999999999998 89999999999998 4 599999999999999887776799999999999999
Q ss_pred ceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCC
Q 006212 490 LRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQ 568 (656)
Q Consensus 490 I~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~ 568 (656)
|++.|.+.+.+ ..|||++.|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|.|+
T Consensus 395 I~v~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~gGg~~~I~~ing~~v~~~~~~~~li~~~~D~ 461 (525)
T TIGR01327 395 ITVEESKSESS---PDYKNYLSVTVT----------GDSGTVSVAGTVFGGFSPRIVEIDGFHVDLEPEGIMLIILHLDK 461 (525)
T ss_pred CEEEEEEccCC---CCCCCEEEEEEE----------eCCcEEEEEEEEecCCcEEEEEECCEEEEEecCccEEEEEecCc
Confidence 99999877644 489999999997 35678999999997 79999999999999999999999999999
Q ss_pred CCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 569 PGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 569 PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
||+|++|+++|++++|||++|+++|..++++|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 pG~I~~v~~~L~~~~iNIa~m~~~R~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~v~~i~~ 525 (525)
T TIGR01327 462 PGVIGKVGTLLGTAGINIASMQLGRKEKGGEALMLLSLDQPVPDEVLEEIKAIPDILSVFVVDL 525 (525)
T ss_pred CCcchHHHhHHhhcCCChHHcEeecCCCCCeEEEEEEcCCCCCHHHHHHHhcCCCccEEEEEeC
Confidence 9999999999999999999999999999999999999999999999999999999999999875
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-107 Score=917.47 Aligned_cols=523 Identities=49% Similarity=0.746 Sum_probs=492.2
Q ss_pred CeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 91 PTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+||++++++.+..++.|++.. ++......+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+||||
T Consensus 1 m~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 79 (526)
T PRK13581 1 MKVLVSDPISPAGLEILKDAPGVEVDVKTGLDKEELLEIIGDYDALIVRSATKVTAEVLEAA-KNLKVIGRAGVGVDNVD 79 (526)
T ss_pred CeEEEeCCCCHHHHHHHhccCCeEEEeCCCCCHHHHHHHhcCCCEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccc
Confidence 368999999998888888762 444444557889999999999999988789999999988 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++
T Consensus 80 ~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~l~gktvgIiG~G~IG~~vA~~l 159 (526)
T PRK13581 80 VPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVELYGKTLGIIGLGRIGSEVAKRA 159 (526)
T ss_pred HHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccccCCCEEEEECCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998766678999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
++|||+|++|||+.+.+.+...|+..+++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++|
T Consensus 160 ~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDiV~l~lP~t~~t~~li~~~~l~~mk~ga~lIN~aRG~~vde~a 239 (526)
T PRK13581 160 KAFGMKVIAYDPYISPERAAQLGVELVSLDELLARADFITLHTPLTPETRGLIGAEELAKMKPGVRIINCARGGIIDEAA 239 (526)
T ss_pred HhCCCEEEEECCCCChhHHHhcCCEEEcHHHHHhhCCEEEEccCCChHhhcCcCHHHHhcCCCCeEEEECCCCceeCHHH
Confidence 99999999999987666667778888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCCh
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPS 408 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~ 408 (656)
|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.||.|.+++
T Consensus 240 L~~aL~~g~i~gAaLDVf~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn~~~~~~ 318 (526)
T PRK13581 240 LAEALKSGKVAGAALDVFEKEPPT-DSPLFELPNVVVTPHLGASTAEAQENVAIQVAEQVIDALRGGPVPNAVNLPSITA 318 (526)
T ss_pred HHHHHhcCCeeEEEEecCCCCCCC-CchhhcCCCeeEcCccccchHHHHHHHHHHHHHHHHHHHcCCCcCceeeCCCCch
Confidence 999999999999999999999975 8999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhcc
Q 006212 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQK 488 (656)
Q Consensus 409 ~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~ 488 (656)
+.+++++||+++|+|||++++||+++ .+++++++|+|||+ .++. +++++|+++|+|+...++++|++||..+|||+
T Consensus 319 ~~~~~~~~~~~la~riG~~a~ql~~~--~~~~v~i~~~Gsfa-~t~~-~~~d~A~l~GlLg~~~dd~~~~~nA~~iA~e~ 394 (526)
T PRK13581 319 EEAEKLKPYLDLAEKLGSLAAQLADG--PIKSVEITYRGELA-EEDT-EPLTAAALKGLLSPVLGERVNYVNAPLLAKER 394 (526)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHcCC--CceEEEEEEecccc-cccc-cHHHHHHHHHhCccccCCCccccCHHHHHHHc
Confidence 99999999999999999999999988 89999999999998 7776 49999999999988776669999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecC
Q 006212 489 GLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVD 567 (656)
Q Consensus 489 GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D 567 (656)
||+++|.+.+.+ ..|||++.|+++ +++++++|.|+|+| |.+||++||||+|++.|++|+|++.|.|
T Consensus 395 GI~~~~~~~~~~---~~hpNtv~i~l~----------~~~~~~~v~G~s~ggg~~~I~~ing~~v~~~~~~~~li~~~~D 461 (526)
T PRK13581 395 GIEVEESKSEES---PDYSNLITVTVT----------TDDGERSVAGTVFGDGEPRIVEIDGYRVDAKPEGHMLIIRNRD 461 (526)
T ss_pred CCEEEEEEecCC---CCCCCEEEEEEE----------eCCeEEEEEEEEecCCceEEEEECCEEEEeeCCceEEEEEeCC
Confidence 999999887644 489999999998 35678999999997 7899999999999999999999999999
Q ss_pred CCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 568 QPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 568 ~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
+||+|++|+++|++++|||++|+++|..+++.|+|++++|++++++++++|+++++|.++++++|
T Consensus 462 ~pG~I~~v~~~L~~~~iNIa~m~~~r~~~g~~al~~i~~D~~v~~~~l~~i~~~~~i~~~~~i~~ 526 (526)
T PRK13581 462 RPGVIGKVGTLLGEAGINIAGMQLGRREAGGEALMVLSVDDPVPEEVLEELRALPGILSAKAVEL 526 (526)
T ss_pred cCChhHHHHHHHhhcCCCchhcEeccCCCCCeEEEEEECCCCCCHHHHHHHhcCCCcceEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999975
|
|
| >KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-87 Score=687.18 Aligned_cols=398 Identities=61% Similarity=0.871 Sum_probs=384.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+.+||+++++.+.+++.|++.+ +|++.+.++.||+.+.++++|++++|+.|++|+++|+.+..+||+|+|+|+|+||||
T Consensus 6 ~~~il~~e~~~~~~~~~l~~~g~~v~~~~~~~~eel~~~i~~~~aviVrs~tkvtadvl~aa~~~lkvVgrag~G~dNVD 85 (406)
T KOG0068|consen 6 MRKILVAESLDQACIEILKDNGYQVEFKKNLSLEELIEKIKDCDALIVRSKTKVTADVLEAAAGGLKVVGRAGIGVDNVD 85 (406)
T ss_pred cceEEEecccchHHHHHHHhcCceEEEeccCCHHHHHHHhccCCEEEEEeCCeecHHHHHhhcCCeEEEEecccCccccC
Confidence 3489999999999999999987 899999999999999999999999999999999999966679999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+|.+|+.++|||+++|+++|+|+++++..++|+|+|++.++.|.+|+|||+||+|+|+||+.+|+++
T Consensus 86 L~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el~GKTLgvlG~GrIGseVA~r~ 165 (406)
T KOG0068|consen 86 LKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWELRGKTLGVLGLGRIGSEVAVRA 165 (406)
T ss_pred hhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEEeccEEEEeecccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
+++||+|++|||..+.+.+...|++.++++|+++.||||++|||++|+|++|+|++.|++||+|+.|||++||++||+.|
T Consensus 166 k~~gm~vI~~dpi~~~~~~~a~gvq~vsl~Eil~~ADFitlH~PLtP~T~~lin~~tfA~mKkGVriIN~aRGGvVDe~A 245 (406)
T KOG0068|consen 166 KAMGMHVIGYDPITPMALAEAFGVQLVSLEEILPKADFITLHVPLTPSTEKLLNDETFAKMKKGVRIINVARGGVVDEPA 245 (406)
T ss_pred HhcCceEEeecCCCchHHHHhccceeeeHHHHHhhcCEEEEccCCCcchhhccCHHHHHHhhCCcEEEEecCCceechHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCC
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMV 406 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~--~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~ 406 (656)
|++||++|+++||++|||+.||+.. ++.|..+|||++|||+|++|.|+|.+++.++++++.+|++| .....||.|.+
T Consensus 246 Lv~Al~sG~vaGaAlDVy~~Epp~~~~~~~Lv~hpnVi~TpHlgasT~EAq~~iaievaea~~~~~~~-~~~g~Vna~~v 324 (406)
T KOG0068|consen 246 LVRALDSGQVAGAALDVYPEEPPKNGWDSELVSHPNVIVTPHLGASTEEAQSRIAIEVAEAVSDYING-NSAGSVNAPEV 324 (406)
T ss_pred HHHHHhcCcccceeeecccCCCCccchhHHHhcCCceeecCccccchHHHHHHHHHHHHHHHHHHhcc-Cccceechhhh
Confidence 9999999999999999999999754 78999999999999999999999999999999999999999 77899999999
Q ss_pred ChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhh
Q 006212 407 PSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAK 486 (656)
Q Consensus 407 ~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAk 486 (656)
+++.+++++||+.+++++||++.|++.|++++..+..+|.+.. +.+++.+.+.+.+|+.+++.+-.+|++|++.++|
T Consensus 325 ~~~~l~~~~~~~~~a~~l~r~~~~~~~~~~~~~~~~~~~~s~~---~~d~~~l~A~i~~~~~e~i~~~~~nLvn~~~~~k 401 (406)
T KOG0068|consen 325 ALESLTELKPNIVLAEKLGRLVPGVLKGVNGVLSVHNIYKSFS---DGDIALLRADISKGIIEPIKDIYVNLVNADAKAK 401 (406)
T ss_pred hhhhhhccCchhHHHHHHhhhhHHHhcCCccceeeeehhhhcc---ccceeeeHHHHhccCcchHHHHHHHHhccchhhh
Confidence 9999999999999999999999999999888888888887654 4789999999999999999999999999999999
Q ss_pred ccCce
Q 006212 487 QKGLR 491 (656)
Q Consensus 487 e~GI~ 491 (656)
+||++
T Consensus 402 ~r~l~ 406 (406)
T KOG0068|consen 402 QRGLY 406 (406)
T ss_pred hhccC
Confidence 99974
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-73 Score=623.73 Aligned_cols=392 Identities=32% Similarity=0.491 Sum_probs=351.6
Q ss_pred CCCeEEEeCCCCHhHHHHhhcC-C-cEEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 89 PKPTILVSEKLGEAGLAILRSF-G-NVECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~-~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
.|++|++++.+.+...+.|++. . ++... ...+++++.+.+.++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 9 ~~~~ili~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 87 (409)
T PRK11790 9 DKIKFLLLEGVHQSAVEVLRAAGYTNIEYHKGALDEEELIEAIKDAHFIGIRSRTQLTEEVLAAA-EKLVAIGCFCIGTN 87 (409)
T ss_pred CCeEEEEECCCCHHHHHHHHhcCCceEEECCCCCCHHHHHHHcCCCCEEEEeCCCCCCHHHHhhC-CCCeEEEECceecc
Confidence 4678999999999888888765 3 55443 2357788999999999998887788999999988 59999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA 245 (656)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|
T Consensus 88 ~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~gktvGIiG~G~IG~~vA 167 (409)
T PRK11790 88 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRGKTLGIVGYGHIGTQLS 167 (409)
T ss_pred cccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCCCEEEEECCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999765668999999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 246 RRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 246 ~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+++++|||+|++|||+... ...++..+ ++++++++||+|++|+|+|++|++++|++.|++||+|++|||+|||++|
T Consensus 168 ~~~~~fGm~V~~~d~~~~~---~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~v 244 (409)
T PRK11790 168 VLAESLGMRVYFYDIEDKL---PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGAEELALMKPGAILINASRGTVV 244 (409)
T ss_pred HHHHHCCCEEEEECCCccc---ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCHHHHhcCCCCeEEEECCCCccc
Confidence 9999999999999986421 11234444 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~----~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
|++||+++|++|+|+||++|||+.||++. ++|||.+||+++|||+|++|.|++++++..+++|+.+|++|+.+.+.
T Consensus 245 de~aL~~aL~~g~i~gaalDVf~~EP~~~~~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~~~~~~~~ 324 (409)
T PRK11790 245 DIDALADALKSGHLAGAAIDVFPVEPKSNGDPFESPLRGLDNVILTPHIGGSTQEAQENIGLEVAGKLVKYSDNGSTLSA 324 (409)
T ss_pred CHHHHHHHHHcCCceEEEEcCCCCCCCCccccccchhhcCCCEEECCcCCCCHHHHHHHHHHHHHHHHHHHHcCCCcCcc
Confidence 99999999999999999999999999876 36999999999999999999999999999999999999999888888
Q ss_pred ccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccc
Q 006212 401 INAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480 (656)
Q Consensus 401 Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vN 480 (656)
||.| +
T Consensus 325 vn~~---------------------------------------------------------------------~------ 329 (409)
T PRK11790 325 VNFP---------------------------------------------------------------------E------ 329 (409)
T ss_pred eecc---------------------------------------------------------------------c------
Confidence 8863 0
Q ss_pred hHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCccE
Q 006212 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNL 560 (656)
Q Consensus 481 A~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~~ 560 (656)
+. .. +....|.
T Consensus 330 -----------~~---~~-------------------------------------------------------~~~~~~r 340 (409)
T PRK11790 330 -----------VS---LP-------------------------------------------------------EHPGGHR 340 (409)
T ss_pred -----------cc---cC-------------------------------------------------------CCCCCce
Confidence 00 00 0012567
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
|++.|+|+||+|++|+++|++++|||++|++.|. ++.|+|+|++|+.++++++++|+++++|.+|+++
T Consensus 341 lii~h~d~pG~ia~it~~l~~~~iNI~~m~~~~~--~~~A~~iie~D~~~~~~~~~~i~~i~~v~~v~~~ 408 (409)
T PRK11790 341 LLHIHENRPGVLAAINQIFAEQGINIAAQYLQTD--GEIGYVVIDVDADYAEEALDALKAIPGTIRARLL 408 (409)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcCCCHHHheeccC--CCEEEEEEEeCCCCcHHHHHHHHcCCCeEEEEEe
Confidence 8889999999999999999999999999999754 4999999999999999999999999999999876
|
|
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-70 Score=583.18 Aligned_cols=316 Identities=48% Similarity=0.693 Sum_probs=292.9
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC--cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFG--NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~--~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
.++++++++.+.+..++.+.... ++......+.+++.+.+.++|++++ +.+++++++++.+ ++||+|+++|+|+||
T Consensus 2 ~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~d~~~~-~~~~v~~~~l~~~-~~Lk~I~~~g~Gvd~ 79 (324)
T COG0111 2 MMIKVLVTDPLAPDALEELLAAYDVEVPDGPDLDEEELLEALADADALIV-SVTPVTEEVLAAA-PNLKAIGRAGAGVDN 79 (324)
T ss_pred CcceeeccCccCHHHHHHHHhccccccccccccchHHHHhhcccCcEEEE-ecCCCCHHHHhhC-CCceEEEEccccccc
Confidence 47889999999999999887642 2333345678889999999999999 8899999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 246 (656)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++++++|.|++..+.|.+|+||||||||+|+||+.+|+
T Consensus 80 id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~gkTvGIiG~G~IG~~va~ 159 (324)
T COG0111 80 IDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAGKTVGIIGLGRIGRAVAK 159 (324)
T ss_pred cCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccCCEEEEECCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999778899999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 247 RAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 247 ~lk~~G~~Vi~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
++++|||+|++|||+.+.+.+...++. ..+|++++++||||++|+|+|++|++|||++.|++||+|++|||||||++||
T Consensus 160 ~l~afgm~v~~~d~~~~~~~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~~~~a~MK~gailIN~aRG~vVd 239 (324)
T COG0111 160 RLKAFGMKVIGYDPYSPRERAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINAEELAKMKPGAILINAARGGVVD 239 (324)
T ss_pred HHHhCCCeEEEECCCCchhhhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCHHHHhhCCCCeEEEECCCcceec
Confidence 999999999999998766655555655 4579999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 006212 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPM 405 (656)
Q Consensus 326 e~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~ 405 (656)
++||++||++|+|+||+||||+.||++.++|||++|||++|||+|++|.|++++++.++++|+.+|++|..+.+ |.|.
T Consensus 240 e~aL~~AL~~G~i~gA~lDVf~~EPl~~~~pL~~~pnV~~TPHia~~T~ea~~~~~~~~~~~i~~~l~g~~~~~--~~~~ 317 (324)
T COG0111 240 EDALLAALDSGKIAGAALDVFEEEPLPADSPLWDLPNVILTPHIGGSTDEAQERVAEIVAENIVRYLAGGPVVN--NAPE 317 (324)
T ss_pred HHHHHHHHHcCCcceEEecCCCCCCCCCCChhhcCCCeEECCcccccCHHHHHHHHHHHHHHHHHHHcCCCCCC--Cccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877 6665
Q ss_pred CCh
Q 006212 406 VPS 408 (656)
Q Consensus 406 ~~~ 408 (656)
++.
T Consensus 318 v~~ 320 (324)
T COG0111 318 VDL 320 (324)
T ss_pred ccc
Confidence 543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-68 Score=563.97 Aligned_cols=312 Identities=30% Similarity=0.501 Sum_probs=288.4
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
+++||+++++++...+.|++..++.... ..+.+++.+.+.++|++|+++ .++++++++++ |+||+|+++|+|+||
T Consensus 2 ~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~ad~li~~~-~~~~~~~l~~~-p~Lk~I~~~g~G~d~ 79 (323)
T PRK15409 2 KPSVILYKALPDDLLQRLEEHFTVTQVANLSPETVEQHAAAFAEAEGLLGSG-EKVDAALLEKM-PKLRAASTISVGYDN 79 (323)
T ss_pred CceEEEeCCCCHHHHHHHHhcCcEEEcCCCCCCCHHHHHHHhcCCeEEEEcC-CCCCHHHHhhC-CCCeEEEECceeccc
Confidence 5789999999988888888766665432 235678889999999999864 58999999988 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChhHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||+++|+++||.|+|+|++|+.+||||+++|||+++|+++++++.+++|+|... .+.|.+|+|||+||||+|+||+.
T Consensus 80 id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG~G~IG~~ 159 (323)
T PRK15409 80 FDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWFGTDVHHKTLGIVGMGRIGMA 159 (323)
T ss_pred ccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccccCCCCCCEEEEEcccHHHHH
Confidence 999999999999999999999999999999999999999999999999999743 23588999999999999999999
Q ss_pred HHHHHh-cCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 244 VARRAK-GLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 244 vA~~lk-~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|++++ +|||+|++|||+...+.....++.++++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||+
T Consensus 160 va~~l~~~fgm~V~~~~~~~~~~~~~~~~~~~~~l~ell~~sDvv~lh~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ 239 (323)
T PRK15409 160 LAQRAHFGFNMPILYNARRHHKEAEERFNARYCDLDTLLQESDFVCIILPLTDETHHLFGAEQFAKMKSSAIFINAGRGP 239 (323)
T ss_pred HHHHHHhcCCCEEEEECCCCchhhHHhcCcEecCHHHHHHhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECCCcc
Confidence 999998 9999999999986554445667888899999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+||++||+++|++|+|+||+||||+.||++.++|||++||+++|||+|+.|.|++.++...+++|+.+|++|+++.+.||
T Consensus 240 vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~~vn 319 (323)
T PRK15409 240 VVDENALIAALQKGEIHAAGLDVFEQEPLSVDSPLLSLPNVVAVPHIGSATHETRYNMAACAVDNLIDALQGKVEKNCVN 319 (323)
T ss_pred ccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCchhhcCCCEEEcCcCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccC
Confidence 99999999999999999999999999999889999999999999999999999999999999999999999999999988
Q ss_pred C
Q 006212 403 A 403 (656)
Q Consensus 403 ~ 403 (656)
.
T Consensus 320 ~ 320 (323)
T PRK15409 320 P 320 (323)
T ss_pred c
Confidence 4
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-66 Score=550.10 Aligned_cols=313 Identities=38% Similarity=0.597 Sum_probs=289.6
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCC--CHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLYDL--SPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~--~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
|++++.+.++++...+.+.+.+++...... ...++.+..+++|++++...+++++++++++ |+||+|+..|+|||||
T Consensus 2 k~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~-p~LKlIa~~~~G~D~v 80 (324)
T COG1052 2 KIVVLSTRKLPPEVLERLKEKFEVERYEDDLTPDTELAERLKDADAVITFVNDRIDAEVLEKL-PGLKLIATRSAGYDNV 80 (324)
T ss_pred CcEEEecCcCCHHHHHHhhccEEEEEeccCCccchHHHHHhcCCcEEEEcCCCCcCHHHHHhC-CCcEEEEEeccccCcc
Confidence 677999999999988888887666554322 1116788899999999987788999999998 6999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc----ccccccCCCEEEEEecChhHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~l~gktvGIIGlG~IG~~ 243 (656)
|+++|+++||.|+|+|++++++||||+++|||++.|++.++++.+|+|+|.... ..|.+++|||+||||+|+||++
T Consensus 81 Dl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~~~~~l~gktvGIiG~GrIG~a 160 (324)
T COG1052 81 DLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPLLGFDLRGKTLGIIGLGRIGQA 160 (324)
T ss_pred cHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccccccCCCCCEEEEECCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999864 5788999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|+++++|||+|++||++...+..+..++.++++++++++||+|++|||+|++|+|+||++.|++||+|++|||+|||++
T Consensus 161 vA~r~~~Fgm~v~y~~~~~~~~~~~~~~~~y~~l~ell~~sDii~l~~Plt~~T~hLin~~~l~~mk~ga~lVNtaRG~~ 240 (324)
T COG1052 161 VARRLKGFGMKVLYYDRSPNPEAEKELGARYVDLDELLAESDIISLHCPLTPETRHLINAEELAKMKPGAILVNTARGGL 240 (324)
T ss_pred HHHHHhcCCCEEEEECCCCChHHHhhcCceeccHHHHHHhCCEEEEeCCCChHHhhhcCHHHHHhCCCCeEEEECCCccc
Confidence 99999999999999999876555566668888999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCc---EEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN---VTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~n---vilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
||++||++||++|+|+|||+|||+.||...+++|+.++| +++|||+|+.|.|++.+|+..+++|+.+|++|+.+.+.
T Consensus 241 VDe~ALi~AL~~g~i~gaglDV~e~Ep~~~d~~l~~l~~~~~vvltPHia~at~ea~~~m~~~~~~nl~~~~~g~~~~~~ 320 (324)
T COG1052 241 VDEQALIDALKSGKIAGAGLDVFENEPALFDHPLLRLDNFPNVVLTPHIASATEEARKAMAELALENLEAFFDGGVPPNE 320 (324)
T ss_pred cCHHHHHHHHHhCCcceEEeeecCCCCCCCChhHhhccCCCCEEEccccccccHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 999999999999999999999999999877899998777 99999999999999999999999999999999999888
Q ss_pred ccC
Q 006212 401 INA 403 (656)
Q Consensus 401 Vn~ 403 (656)
|+.
T Consensus 321 v~~ 323 (324)
T COG1052 321 VNP 323 (324)
T ss_pred CCC
Confidence 874
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-65 Score=540.65 Aligned_cols=298 Identities=29% Similarity=0.486 Sum_probs=271.5
Q ss_pred eEEEeCC--CCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccch
Q 006212 92 TILVSEK--LGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (656)
Q Consensus 92 ~ilv~~~--l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~ 169 (656)
||++.+. +.+..++.|++.+++......+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 79 (311)
T PRK08410 2 KIVILDAKTLGDKDLSVFEEFGDFQIYPTTSPEEVIERIKDANIIITN-KVVIDKEVLSQL-PNLKLICITATGTNNVDI 79 (311)
T ss_pred eEEEEecCCCChhhHHHHhhCceEEEeCCCCHHHHHHHhCCCCEEEEC-CCCCCHHHHhhC-CCCeEEEEcccccccccH
Confidence 4777776 667778888876666554444678899999999999886 468999999998 599999999999999999
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccc------cccccCCCEEEEEecChhHHH
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY------VGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~------~g~~l~gktvGIIGlG~IG~~ 243 (656)
++|+++||.|+|+||+|+.+||||+++|||+++|+++.+++.+++|+|.+... .+.+|+|||+||||+|+||+.
T Consensus 80 ~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~L~gktvGIiG~G~IG~~ 159 (311)
T PRK08410 80 EYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRPLGEIKGKKWGIIGLGTIGKR 159 (311)
T ss_pred HHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCccccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999985421 257999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|+++++|||+|++|||+... ...++..+++++++++||+|++|+|+|++|+++||++.|++||||++|||+|||++
T Consensus 160 vA~~~~~fgm~V~~~d~~~~~---~~~~~~~~~l~ell~~sDvv~lh~Plt~~T~~li~~~~~~~Mk~~a~lIN~aRG~v 236 (311)
T PRK08410 160 VAKIAQAFGAKVVYYSTSGKN---KNEEYERVSLEELLKTSDIISIHAPLNEKTKNLIAYKELKLLKDGAILINVGRGGI 236 (311)
T ss_pred HHHHHhhcCCEEEEECCCccc---cccCceeecHHHHhhcCCEEEEeCCCCchhhcccCHHHHHhCCCCeEEEECCCccc
Confidence 999999999999999997532 12456778999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccC---CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH---ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE 395 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~---~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~ 395 (656)
||++||++||++|+|+ |+||||+.||++.++|||.+ ||||+|||+|++|.|+++++...+++|+.+|++|+
T Consensus 237 VDe~AL~~AL~~g~i~-AaLDV~~~EP~~~~~pL~~~~~~~NvilTPH~a~~t~e~~~~~~~~~~~nl~~~~~g~ 310 (311)
T PRK08410 237 VNEKDLAKALDEKDIY-AGLDVLEKEPMEKNHPLLSIKNKEKLLITPHIAWASKEARKTLIEKVKENIKDFLEGG 310 (311)
T ss_pred cCHHHHHHHHHcCCeE-EEEecCCCCCCCCCChhhccCCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999 99999999999999999986 89999999999999999999999999999999886
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-64 Score=541.94 Aligned_cols=312 Identities=38% Similarity=0.633 Sum_probs=286.9
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
|+||++++++++...+.|++..++.... ..+.+++.+.++++|++++++.+++++++++++ |+||||+++|+|+||
T Consensus 2 ~~kil~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d~ 80 (333)
T PRK13243 2 KPKVFITREIPENGIEMLEEHFEVEVWEDEREIPREVLLEKVRDVDALVTMLSERIDCEVFEAA-PRLRIVANYAVGYDN 80 (333)
T ss_pred CceEEEECCCCHHHHHHHhcCceEEEecCCCCCCHHHHHHHhCCCcEEEEeCCCCCCHHHHhhC-CCCeEEEecCccccc
Confidence 5889999999888888887765554332 246788999999999999987678999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc-------ccccccCCCEEEEEecCh
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~ 239 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+.. +.|.+|+||||||||+|+
T Consensus 81 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~g~~L~gktvgIiG~G~ 160 (333)
T PRK13243 81 IDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMFLGYDVYGKTIGIIGFGR 160 (333)
T ss_pred cCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccccccCCCCCEEEEECcCH
Confidence 9999999999999999999999999999999999999999999999999997521 257899999999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
||+.+|++|++|||+|++||++.........++...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~l~ell~~aDiV~l~lP~t~~T~~~i~~~~~~~mk~ga~lIN~a 240 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEAEKELGAEYRPLEELLRESDFVSLHVPLTKETYHMINEERLKLMKPTAILVNTA 240 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhhHHHcCCEecCHHHHHhhCCEEEEeCCCChHHhhccCHHHHhcCCCCeEEEECc
Confidence 99999999999999999999986544445567777899999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 320 Rg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
||+++|+++|+++|++|+|+||+||||+.||++ ++|||++|||++|||+|++|.|++.++...+++|+.+|++|+++.+
T Consensus 241 Rg~~vd~~aL~~aL~~g~i~gAaLDV~~~EP~~-~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~~~ 319 (333)
T PRK13243 241 RGKVVDTKALVKALKEGWIAGAGLDVFEEEPYY-NEELFSLKNVVLAPHIGSATFEAREGMAELVAENLIAFKRGEVPPT 319 (333)
T ss_pred CchhcCHHHHHHHHHcCCeEEEEeccCCCCCCC-CchhhcCCCEEECCcCCcCHHHHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 999999999999999999999999999999987 8999999999999999999999999999999999999999998888
Q ss_pred cccC
Q 006212 400 AINA 403 (656)
Q Consensus 400 ~Vn~ 403 (656)
.||.
T Consensus 320 ~v~~ 323 (333)
T PRK13243 320 LVNR 323 (333)
T ss_pred ccCH
Confidence 8874
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-64 Score=531.09 Aligned_cols=302 Identities=30% Similarity=0.469 Sum_probs=269.0
Q ss_pred eEEEeCCC----CHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 92 TILVSEKL----GEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 92 ~ilv~~~l----~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
||++++.. .+...+.|++. .++.+....+++++.+.+.++|+++++ .+++++++++++ |+||+|+++|+|+||
T Consensus 2 ~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 79 (317)
T PRK06487 2 RAVFLDHDSLDLGDLDLSPLEQAFDELQLHDATTPEQVAERLRGAQVAISN-KVALDAAALAAA-PQLKLILVAATGTNN 79 (317)
T ss_pred eEEEEccccCCccccchhHHHhhCCeEEEecCCCHHHHHHHhCCCeEEEEe-CCCCCHHHHhhC-CCCeEEEEcCccccc
Confidence 46666552 23445666643 455555555678899999999998875 468999999988 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc------ccccccCCCEEEEEecChh
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKV 240 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~I 240 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+.. +.+.+|+|||+||||+|+|
T Consensus 80 id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~l~gktvgIiG~G~I 159 (317)
T PRK06487 80 VDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFPIVELEGKTLGLLGHGEL 159 (317)
T ss_pred cCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCcccccCCCEEEEECCCHH
Confidence 9999999999999999999999999999999999999999999999999998642 2357899999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
|+.+|+++++|||+|++||++.... ....++|++++++||+|++|+|+|++|+++||++.|++||+|++|||+||
T Consensus 160 G~~vA~~l~~fgm~V~~~~~~~~~~-----~~~~~~l~ell~~sDiv~l~lPlt~~T~~li~~~~~~~mk~ga~lIN~aR 234 (317)
T PRK06487 160 GGAVARLAEAFGMRVLIGQLPGRPA-----RPDRLPLDELLPQVDALTLHCPLTEHTRHLIGARELALMKPGALLINTAR 234 (317)
T ss_pred HHHHHHHHhhCCCEEEEECCCCCcc-----cccccCHHHHHHhCCEEEECCCCChHHhcCcCHHHHhcCCCCeEEEECCC
Confidence 9999999999999999999864221 23456899999999999999999999999999999999999999999999
Q ss_pred CchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCcccc--CCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006212 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQ--HENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (656)
Q Consensus 321 g~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~--~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (656)
|++||++||++||++|+|+||+||||+.||++.++|||. +||+++|||+|++|.|+++++...+++|+.+|++|++.
T Consensus 235 G~vVde~AL~~AL~~g~i~gAaLDVf~~EP~~~~~pl~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~~- 313 (317)
T PRK06487 235 GGLVDEQALADALRSGHLGGAATDVLSVEPPVNGNPLLAPDIPRLIVTPHSAWGSREARQRIVGQLAENARAFFAGKPL- 313 (317)
T ss_pred ccccCHHHHHHHHHcCCeeEEEeecCCCCCCCCCCchhhcCCCCEEECCccccCCHHHHHHHHHHHHHHHHHHHcCCCC-
Confidence 999999999999999999999999999999988899995 89999999999999999999999999999999999754
Q ss_pred ccc
Q 006212 399 TAI 401 (656)
Q Consensus 399 ~~V 401 (656)
++|
T Consensus 314 ~~v 316 (317)
T PRK06487 314 RVV 316 (317)
T ss_pred cCC
Confidence 444
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-62 Score=529.77 Aligned_cols=314 Identities=33% Similarity=0.432 Sum_probs=280.3
Q ss_pred CCCCeEEEeCCCCHh-HHHHhhcC-CcEEEec----CCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCC-cceeEEe
Q 006212 88 TPKPTILVSEKLGEA-GLAILRSF-GNVECLY----DLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANG-KLKVVGR 159 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~-~~~~l~~~-~~v~~~~----~~~~eel~~~i-~~~d~liv~~~~~v~~e~l~~~~~-~LK~I~~ 159 (656)
..|++|+++.++.++ .++.|++. .++.... ..+.+++.+.+ .++|+++++..++++++++++++. +||+|++
T Consensus 13 ~~~~~v~~~~~~~~~~~~~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~i~~~~l~~~~~l~lk~I~~ 92 (386)
T PLN02306 13 NGKYRVVSTKPMPGTRWINLLVDQDCRVEICTEKKTILSVEDIIALIGDKCDGVIGQLTEDWGETLFSALSKAGGKAFSN 92 (386)
T ss_pred CCCceEEEeCCCCcHHHHHHHHhcCceEEecCCcCCCCCHHHHHHHhhcCCcEEEEcCCCCcCHHHHHhCCcCCceEEEE
Confidence 468999999999874 67888765 4665422 25788898887 579999998777899999999852 4799999
Q ss_pred cccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEe
Q 006212 160 AGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMG 236 (656)
Q Consensus 160 ~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIG 236 (656)
.|+|+||||+++|+++||.|+|+||+++.+||||+++|||+++|+++++++.+++|+|.+. ...|.+|.||||||||
T Consensus 93 ~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g~~L~gktvGIiG 172 (386)
T PLN02306 93 MAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVGNLLKGQTVGVIG 172 (386)
T ss_pred CCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCCcCCCCCEEEEEC
Confidence 9999999999999999999999999999999999999999999999999999999998642 2357899999999999
Q ss_pred cChhHHHHHHHHh-cCCCEEEEECCCCChhHH---HHcC------------Cee-cCHHHHhccCCEEEEccCCCccccc
Q 006212 237 FGKVGSEVARRAK-GLGMNVIAHDPYAPADKA---RAVG------------VEL-VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 237 lG~IG~~vA~~lk-~~G~~Vi~~d~~~~~~~a---~~~g------------~~~-~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
+|.||+.+|++++ +|||+|++|||+...+.. ...| +.. .+|++++++||+|++|+|+|++|++
T Consensus 173 ~G~IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~ 252 (386)
T PLN02306 173 AGRIGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYH 252 (386)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhh
Confidence 9999999999985 999999999998642211 1111 122 4899999999999999999999999
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
|||++.|++||+|++|||+|||++||++||+++|++|+|.||+||||+.||++ +++||++|||++|||+|++|.+++++
T Consensus 253 lin~~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i~gAaLDVf~~EP~~-~~~L~~~pNVilTPHiag~T~e~~~~ 331 (386)
T PLN02306 253 LINKERLALMKKEAVLVNASRGPVIDEVALVEHLKANPMFRVGLDVFEDEPYM-KPGLADMKNAVVVPHIASASKWTREG 331 (386)
T ss_pred hcCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCeeEEEEeCCCCCCCC-cchHhhCCCEEECCccccCcHHHHHH
Confidence 99999999999999999999999999999999999999999999999999974 67899999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCcccc
Q 006212 380 VAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+...+++|+.+|++|+++.+.||
T Consensus 332 ~~~~~~~ni~~~~~g~~~~~~~~ 354 (386)
T PLN02306 332 MATLAALNVLGKLKGYPVWGDPN 354 (386)
T ss_pred HHHHHHHHHHHHHcCCCCccccc
Confidence 99999999999999999999999
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-62 Score=519.91 Aligned_cols=273 Identities=31% Similarity=0.476 Sum_probs=251.9
Q ss_pred CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHH
Q 006212 118 DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIAL 197 (656)
Q Consensus 118 ~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal 197 (656)
..+++++.+.++++|++++. .+++++++++++ |+||+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++
T Consensus 32 ~~~~~~~~~~~~~~d~ii~~-~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l 109 (314)
T PRK06932 32 HTSAEQTIERAKDADIVITS-KVLFTRETLAQL-PKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGM 109 (314)
T ss_pred CCChHHHHHHhCCCcEEEEe-CCCCCHHHHhhC-cCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHH
Confidence 45688899999999988874 568999999988 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHhchhHHHHHHHcccccccc------ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC
Q 006212 198 LASMARNVSQADASIKAGKWLRSK------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271 (656)
Q Consensus 198 ~L~~~R~i~~~~~~~~~g~W~~~~------~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g 271 (656)
||+++|+++.+++.+++|+|.+.. +.+.+|+|||+||||+|.||+.+|+++++|||+|++||++.... ..
T Consensus 110 ~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~~~~----~~ 185 (314)
T PRK06932 110 IFALKHSLMGWYRDQLSDRWATCKQFCYFDYPITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKGASV----CR 185 (314)
T ss_pred HHHHHhChHHHHHHHHcCCCCcCccccccCCcccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCcccc----cc
Confidence 999999999999999999997532 23578999999999999999999999999999999999764211 12
Q ss_pred CeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC
Q 006212 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351 (656)
Q Consensus 272 ~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~ 351 (656)
..+.+|++++++||+|++|+|+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|+||+||||+.||+
T Consensus 186 ~~~~~l~ell~~sDiv~l~~Plt~~T~~li~~~~l~~mk~ga~lIN~aRG~~Vde~AL~~aL~~g~i~gAaLDV~~~EP~ 265 (314)
T PRK06932 186 EGYTPFEEVLKQADIVTLHCPLTETTQNLINAETLALMKPTAFLINTGRGPLVDEQALLDALENGKIAGAALDVLVKEPP 265 (314)
T ss_pred cccCCHHHHHHhCCEEEEcCCCChHHhcccCHHHHHhCCCCeEEEECCCccccCHHHHHHHHHcCCccEEEEecCCCCCC
Confidence 23568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc----cCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006212 352 AKDSKLV----QHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 352 ~~~~~L~----~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (656)
+.++||| ++|||++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 266 ~~~~pl~~~~~~~pnvilTPHia~~t~e~~~~~~~~~~~ni~~~~~~g~ 314 (314)
T PRK06932 266 EKDNPLIQAAKRLPNLLITPHIAWASDSAVTTLVNKVAQNIEEFVQQGK 314 (314)
T ss_pred CCCChhhHhhcCCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 8899998 48999999999999999999999999999999998763
|
|
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-61 Score=519.10 Aligned_cols=308 Identities=26% Similarity=0.394 Sum_probs=273.5
Q ss_pred CCCCCeEEEeCCCCHhH----HHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 87 VTPKPTILVSEKLGEAG----LAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 87 ~~~~~~ilv~~~l~~~~----~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
.++|||||++.+..+.. .+.++... +......+.+|+.+.++++|+++++ ..++++++++++ |+||+|+++|+
T Consensus 15 ~~~~~~vl~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~e~~~~~~~~d~~i~~-~~~~~~~~l~~~-~~Lk~I~~~~~ 91 (347)
T PLN02928 15 DMRPTRVLFCGPEFPASYSYTREYLQKYP-FIQVDAVAREDVPDVIANYDICVPK-MMRLDADIIARA-SQMKLIMQFGV 91 (347)
T ss_pred CCCCCEEEEECCCchhHHHHHHHHhhcCC-eeEecCCCHHHHHHHhcCCcEEEEC-CCCCCHHHHhcC-CCceEEEECCc
Confidence 45688999998887753 34443333 3333345778899999999998876 458999999987 59999999999
Q ss_pred ccCccchhhHHhcCceeecCCCC---ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecCh
Q 006212 163 GIDNVDLQAATEFGCLVVNAPIA---NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 163 GvD~iD~~aa~~~GI~V~n~p~~---n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~ 239 (656)
|+||||+++|.++||.|+|+|++ |+.+||||++++||+++|++..+++.+++|.|.+ ..+.+|+|||+||||+|.
T Consensus 92 G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~--~~~~~l~gktvGIiG~G~ 169 (347)
T PLN02928 92 GLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGE--PIGDTLFGKTVFILGYGA 169 (347)
T ss_pred ccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCccc--ccccCCCCCEEEEECCCH
Confidence 99999999999999999999985 7899999999999999999999999999999975 357899999999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHH-------------cCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA-------------VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~-------------~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
||+.+|++|++|||+|++|||+........ .+....++++++++||+|++|+|+|++|+++|+++.|
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~ell~~aDiVvl~lPlt~~T~~li~~~~l 249 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKGGHEDIYEFAGEADIVVLCCTLTKETAGIVNDEFL 249 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccCcccCHHHHHhhCCEEEECCCCChHhhcccCHHHH
Confidence 999999999999999999999743222111 1124568999999999999999999999999999999
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHH
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~ 386 (656)
++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++|||++||+++|||+|+.|.++++++...+++
T Consensus 250 ~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i~gAaLDV~~~EP~~~~~pL~~~~nviiTPHia~~t~~~~~~~~~~~~~ 329 (347)
T PLN02928 250 SSMKKGALLVNIARGGLLDYDAVLAALESGHLGGLAIDVAWSEPFDPDDPILKHPNVIITPHVAGVTEYSYRSMGKIVGD 329 (347)
T ss_pred hcCCCCeEEEECCCccccCHHHHHHHHHcCCeeEEEEccCCCCCCCCCChhhcCCCEEECCcCCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCc
Q 006212 387 AVVGALRGELSAT 399 (656)
Q Consensus 387 ~i~~~l~g~~~~~ 399 (656)
|+.+|++|+++.+
T Consensus 330 nl~~~~~g~~~~~ 342 (347)
T PLN02928 330 AALQLHAGRPLTG 342 (347)
T ss_pred HHHHHHCCCCCCc
Confidence 9999999987644
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-61 Score=518.06 Aligned_cols=295 Identities=29% Similarity=0.396 Sum_probs=267.7
Q ss_pred hHHHHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcC
Q 006212 102 AGLAILRSFG-NVECLY--DLSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFG 176 (656)
Q Consensus 102 ~~~~~l~~~~-~v~~~~--~~~~eel~~~i~~~d~liv~~~--~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~G 176 (656)
...+.|++.+ ++.... ..+++++.+.++++|++|+... +++++++++++ |+||+|+++|+|+||||+++|+++|
T Consensus 66 ~~~~~l~~~g~~~v~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~a-p~LK~I~~~g~G~D~iDl~aa~~~g 144 (386)
T PLN03139 66 GIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLITTPFHPAYVTAERIKKA-KNLELLLTAGIGSDHIDLPAAAAAG 144 (386)
T ss_pred cHHHHHHhcCCeEEEeCCCCCCHHHHHHHhCCCeEEEEcCccCCCCCHHHHhhC-CCccEEEECCccccccCHHHHHHCC
Confidence 3345566663 444432 2466788999999999998642 47999999998 5999999999999999999999999
Q ss_pred ceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCE
Q 006212 177 CLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254 (656)
Q Consensus 177 I~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~ 254 (656)
|.|+|+||+|+.+||||++++||++.|++.++++.+++|.|.... ..+.+|.||||||||+|+||+.+|++|++|||+
T Consensus 145 I~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIVG~G~IG~~vA~~L~afG~~ 224 (386)
T PLN03139 145 LTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDLEGKTVGTVGAGRIGRLLLQRLKPFNCN 224 (386)
T ss_pred eEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCCCCCEEEEEeecHHHHHHHHHHHHCCCE
Confidence 999999999999999999999999999999999999999998532 357899999999999999999999999999999
Q ss_pred EEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHh
Q 006212 255 VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (656)
Q Consensus 255 Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~a 332 (656)
|++||++. +.+...+.|+..+ ++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||++||++||+++
T Consensus 225 V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~A 304 (386)
T PLN03139 225 LLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNKERIAKMKKGVLIVNNARGAIMDTQAVADA 304 (386)
T ss_pred EEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCHHHHhhCCCCeEEEECCCCchhhHHHHHHH
Confidence 99999975 4444556677665 899999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 333 L~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
|++|+|+||++|||+.||++.++|||.+||+++|||+|+.|.+++++++..+++|+.+|++|++.
T Consensus 305 L~sG~l~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~t~~~~~r~~~~~~~nl~~~~~G~~~ 369 (386)
T PLN03139 305 CSSGHIGGYGGDVWYPQPAPKDHPWRYMPNHAMTPHISGTTIDAQLRYAAGVKDMLDRYFKGEDF 369 (386)
T ss_pred HHcCCceEEEEcCCCCCCCCCCChhhcCCCeEEcccccccCHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999853
|
|
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-60 Score=516.28 Aligned_cols=295 Identities=29% Similarity=0.458 Sum_probs=268.9
Q ss_pred HHhhcCC-cEEEec--CCCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCcee
Q 006212 105 AILRSFG-NVECLY--DLSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (656)
Q Consensus 105 ~~l~~~~-~v~~~~--~~~~eel~~~i~~~d~liv~~--~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V 179 (656)
+.|++.+ ++.... ..+.+++.+.+.++|++|++. ..++++++++++ |+||+|+++|+|+||||+++|+++||.|
T Consensus 62 ~~l~~~g~e~~~~~~~~~~~~~~~~~l~dadili~~~~~~~~~~~e~l~~~-p~LK~I~~~g~G~D~id~~aa~~~gI~V 140 (385)
T PRK07574 62 KFLEERGHELVVTSDKDGPDSDFEKELPDADVVISQPFWPAYLTAERIAKA-PNLKLAITAGIGSDHVDLQAASEHGITV 140 (385)
T ss_pred HHHHhcCcEEEEeCCCCCCHHHHHHHcCCCeEEEEecCCCCCCCHHHHhhC-CCCcEEEECCcccccccHHHHHHCCcEE
Confidence 5566663 555432 236788899999999999863 357999999998 5999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 180 ~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
+|+|++|+.+||||++++||+++|++..+++.+++|+|.+.. ..+.+|+||||||||+|+||+.+|++|++|||+|++
T Consensus 141 ~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~ 220 (385)
T PRK07574 141 AEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHY 220 (385)
T ss_pred EcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceecCCCEEEEECCCHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999998643 247899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 258 HDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 258 ~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
||++. +.+.....|+.. .++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|++||+++|++
T Consensus 221 ~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~iVDe~AL~~AL~s 300 (385)
T PRK07574 221 TDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDADVLSRMKRGSYLVNTARGKIVDRDAVVRALES 300 (385)
T ss_pred ECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCHHHHhcCCCCcEEEECCCCchhhHHHHHHHHHh
Confidence 99986 444445567764 5899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 336 g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
|+|+||++|||+.||++.++|||.+||+++|||+|+.|.|++++++..+++|+.+|++|+++.+.
T Consensus 301 G~i~GAaLDV~~~EPlp~d~pL~~~pNvilTPHiag~T~e~~~~~~~~~~~ni~~~~~G~~~~~~ 365 (385)
T PRK07574 301 GHLAGYAGDVWFPQPAPADHPWRTMPRNGMTPHISGTTLSAQARYAAGTREILECFFEGRPIRDE 365 (385)
T ss_pred CCccEEEEecCCCCCCCCCChHHhCCCeEECCccccCcHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999877653
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-58 Score=491.39 Aligned_cols=312 Identities=26% Similarity=0.428 Sum_probs=275.5
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEE--ecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCC-cceeEEecccccC
Q 006212 89 PKPTILVSEKLGEAGLAILRSFGNVEC--LYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG-KLKVVGRAGVGID 165 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~~v~~--~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~-~LK~I~~~g~GvD 165 (656)
+|++++.+++.....++.+.+..++++ ......+|+.+.+.++|++++++.++++++++++++. +||+|+++|+|+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~lk~I~~~~~G~d 81 (332)
T PRK08605 2 TKIKIMSVRDEDAPYIKAWAEKHHVEVDLTKEALTDDNVEEVEGFDGLSLSQQIPLSEAIYKLLNELGIKQIAQRSAGFD 81 (332)
T ss_pred cEEEEEecCHHHHHHHHHHHHhcCeEEEEecCCCCHHHHHHhcCCCEEEEecCCCCCHHHHHhhhhcCceEEEEcccccc
Confidence 467888888877788877765554443 2223345667889999999998888999999999852 3999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
|||+++|+++||.|+|+|++++.+||||++++||+++|++..+++.+++|.|... ...|.+|+|+||||||+|.||+++
T Consensus 82 ~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~l~g~~VgIIG~G~IG~~v 161 (332)
T PRK08605 82 TYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRSIKDLKVAVIGTGRIGLAV 161 (332)
T ss_pred hhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccceeCCCEEEEECCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999987532 235889999999999999999999
Q ss_pred HHHH-hcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 245 ARRA-KGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 245 A~~l-k~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
|++| ++|||+|++||++..... ..++... ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||.
T Consensus 162 A~~L~~~~g~~V~~~d~~~~~~~--~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~~~l~~mk~gailIN~sRG~ 239 (332)
T PRK08605 162 AKIFAKGYGSDVVAYDPFPNAKA--ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNADLFKHFKKGAVFVNCARGS 239 (332)
T ss_pred HHHHHhcCCCEEEEECCCccHhH--HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCHHHHhcCCCCcEEEECCCCc
Confidence 9999 789999999999864321 2234444 89999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP--~~~~~-----------~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
++|+++|+++|++|+|+||+||||+.|| ++.++ +||.+||+++|||+|++|.|+++++...+++|+.
T Consensus 240 ~vd~~aL~~aL~~g~i~gaalDV~~~Ep~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~n~~ 319 (332)
T PRK08605 240 LVDTKALLDALDNGLIKGAALDTYEFERPLFPSDQRGQTINDPLLESLINREDVILTPHIAFYTDAAVKNLIVDALDATL 319 (332)
T ss_pred ccCHHHHHHHHHhCCeeEEEEecccCCCCccccccccccccchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 34443 4999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 006212 390 GALRGELSATAIN 402 (656)
Q Consensus 390 ~~l~g~~~~~~Vn 402 (656)
+|++|+...+.||
T Consensus 320 ~~~~g~~~~~~~~ 332 (332)
T PRK08605 320 EVLQTGTTRLRVN 332 (332)
T ss_pred HHHcCCCCCCCcC
Confidence 9999999888775
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-58 Score=489.49 Aligned_cols=308 Identities=24% Similarity=0.373 Sum_probs=267.5
Q ss_pred CeEEEeCCCCHh---HHHHhhcCC-cEEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEeccccc
Q 006212 91 PTILVSEKLGEA---GLAILRSFG-NVECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGI 164 (656)
Q Consensus 91 ~~ilv~~~l~~~---~~~~l~~~~-~v~~~-~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~-~~LK~I~~~g~Gv 164 (656)
+||++.+.-+.+ ..+.+++.. ++... ..++.+ +.+.+.++|+++++..++++++++++++ ++||+|++.|+|+
T Consensus 2 ~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~ii~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G~ 80 (330)
T PRK12480 2 TKIMFFGTRDYEKEMALNWGKKNNVEVTTSKELLSSA-TVDQLKDYDGVTTMQFGKLENDVYPKLESYGIKQIAQRTAGF 80 (330)
T ss_pred cEEEEEeCcHHHHHHHHHHHHhcCeEEEEcCCCCCHH-HHHHhCCCCEEEEecCCCCCHHHHHhhhhcCceEEEeccccc
Confidence 678877655433 233445543 33332 234444 5889999999999866789999999985 3899999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||||+++|+++||.|+|+|++++.+||||++++||+++|+++.+++.+++|.|... ...|.+|+|+||||||+|.||++
T Consensus 81 d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~l~g~~VgIIG~G~IG~~ 160 (330)
T PRK12480 81 DMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKPVKNMTVAIIGTGRIGAA 160 (330)
T ss_pred chhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccccCCCEEEEECCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999976432 24578999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|++|++|||+|++||++..... . .... .++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||.
T Consensus 161 vA~~L~~~G~~V~~~d~~~~~~~--~-~~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~~~l~~mk~gavlIN~aRG~ 237 (330)
T PRK12480 161 TAKIYAGFGATITAYDAYPNKDL--D-FLTYKDSVKEAIKDADIISLHVPANKESYHLFDKAMFDHVKKGAILVNAARGA 237 (330)
T ss_pred HHHHHHhCCCEEEEEeCChhHhh--h-hhhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhHHHHhcCCCCcEEEEcCCcc
Confidence 99999999999999998753211 1 1223 389999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCCCC---------CC----CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEPPA---------KD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP~~---------~~----~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
+||++||+++|++|+|+||+||||+.||+. .+ +||+++|||++|||+|+.|.|+++++...+++|+.
T Consensus 238 ~vd~~aL~~aL~~g~i~gaalDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~n~~ 317 (330)
T PRK12480 238 VINTPDLIAAVNDGTLLGAAIDTYENEAAYFTNDWTNKDIDDKTLLELIEHERILVTPHIAFFSDEAVQNLVEGGLNAAL 317 (330)
T ss_pred ccCHHHHHHHHHcCCeeEEEEeccCCCCccccccccccccCchhhHHHhcCCCEEECCcccccHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999952 12 37999999999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 006212 390 GALRGELSATAIN 402 (656)
Q Consensus 390 ~~l~g~~~~~~Vn 402 (656)
+|++|+...+.||
T Consensus 318 ~~~~~~~~~~~~~ 330 (330)
T PRK12480 318 SVINTGTCETRLN 330 (330)
T ss_pred HHHhCCCCcccCC
Confidence 9999999988776
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-55 Score=469.60 Aligned_cols=273 Identities=28% Similarity=0.433 Sum_probs=244.2
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
+||++.+.++ ...+.+++.++|.+... .+.+ .++++|++++++.+++++++++ . ++||+|+++++|+||||
T Consensus 1 mkIl~d~~~~-~~~~~~~~~~ev~~~~~~~~~~~----~l~daD~liv~s~t~v~~~ll~-~-~~Lk~I~~~~~G~D~iD 73 (378)
T PRK15438 1 MKILVDENMP-YARELFSRLGEVKAVPGRPIPVA----QLADADALMVRSVTKVNESLLA-G-KPIKFVGTATAGTDHVD 73 (378)
T ss_pred CEEEEeCCcc-hHHHHHhhcCcEEEeCCCCCCHH----HhCCCcEEEEcCCCCCCHHHhc-C-CCCeEEEECcccccccC
Confidence 4789888775 66677887778776532 3333 3789999999998999999996 4 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++
T Consensus 74 ~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~------------------~g~~L~gktvGIIG~G~IG~~vA~~l 135 (378)
T PRK15438 74 EAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAER------------------DGFSLHDRTVGIVGVGNVGRRLQARL 135 (378)
T ss_pred HHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhcc------------------CCCCcCCCEEEEECcCHHHHHHHHHH
Confidence 999999999999999999999999999999999985 24689999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~----T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
++|||+|++|||..... .....+.++++++++||+|++|+|+|++ |++|++++.|++||+|++|||+|||++|
T Consensus 136 ~a~G~~V~~~dp~~~~~---~~~~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vV 212 (378)
T PRK15438 136 EALGIKTLLCDPPRADR---GDEGDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADEKLIRSLKPGAILINACRGAVV 212 (378)
T ss_pred HHCCCEEEEECCccccc---ccccccCCHHHHHhhCCEEEEeCCCCCCcccccccccCHHHHhcCCCCcEEEECCCchhc
Confidence 99999999999864211 1223467999999999999999999996 9999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~ 393 (656)
|++||+++|++|++.||+||||+.||+ .+++|+.+++ |+|||+||+|.|++.++..++++++.+|+.
T Consensus 213 De~AL~~aL~~g~~~ga~LDV~e~EP~-~~~~Ll~~~~-i~TPHiAg~s~e~~~~~~~~~~~~l~~~~~ 279 (378)
T PRK15438 213 DNTALLTCLNEGQKLSVVLDVWEGEPE-LNVELLKKVD-IGTPHIAGYTLEGKARGTTQVFEAYSKFIG 279 (378)
T ss_pred CHHHHHHHHHhCCCcEEEEecCCCCCC-CchhhhhcCC-EECCccCcCcHHHHHHHHHHHHHHHHHHHc
Confidence 999999999999999999999999996 5778988776 999999999999999999999999999994
|
|
| >KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=459.14 Aligned_cols=281 Identities=33% Similarity=0.514 Sum_probs=256.1
Q ss_pred CHhHHHhhcCCCeEEEEcCC-CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHH
Q 006212 120 SPEALCEKISQCDALIVRSG-TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198 (656)
Q Consensus 120 ~~eel~~~i~~~d~liv~~~-~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~ 198 (656)
+.++..+.+.++...+.... ..++.+++.+.+|+||+|+.+|+|+||||+++|++|||.|+|+|+.++++|||++++++
T Consensus 50 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~li 129 (336)
T KOG0069|consen 50 IKTDFLKRIADSRIAISVPFTGAFTKELISALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLL 129 (336)
T ss_pred chhhhhhhccceeeeeecccchHHhHhhhhhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHH
Confidence 44556666676666655433 35788888887789999999999999999999999999999999999999999999999
Q ss_pred HHHHhchhHHHHHHHccccccc--cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec
Q 006212 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~ 275 (656)
|.+.|++..+++.+++|+|... ...|..+.||||||+|+|+||+.+|+||++||+.+.+++++. ..+.+.+.+.+.+
T Consensus 130 l~~~R~~~~g~~~~~~g~w~~~~~~~~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~~~ 209 (336)
T KOG0069|consen 130 LALLRRFSEGNEMVRNGGWGWAGGWPLGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAEFV 209 (336)
T ss_pred HHHHhhhhhhhhhhhcCCccccCCccccccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccCCchhhHHHhccccc
Confidence 9999999999999999999321 235788999999999999999999999999998888888876 5677777788888
Q ss_pred CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC
Q 006212 276 SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (656)
Q Consensus 276 ~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~ 355 (656)
++++++++||+|++|||+|++|++++|++.|.+||+|++|||+|||+++|++++++||++|+|+|||+|||++|| +.++
T Consensus 210 d~~~~~~~sD~ivv~~pLt~~T~~liNk~~~~~mk~g~vlVN~aRG~iide~~l~eaL~sG~i~~aGlDVf~~EP-~~~~ 288 (336)
T KOG0069|consen 210 DIEELLANSDVIVVNCPLTKETRHLINKKFIEKMKDGAVLVNTARGAIIDEEALVEALKSGKIAGAGLDVFEPEP-PVDH 288 (336)
T ss_pred CHHHHHhhCCEEEEecCCCHHHHHHhhHHHHHhcCCCeEEEeccccccccHHHHHHHHhcCCcccccccccCCCC-CCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999 6899
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 006212 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 356 ~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~V 401 (656)
+|++++|+++|||+|+.|.+++++|+..++.|+.+++.|++....+
T Consensus 289 ~l~~~dnvv~~PHigs~t~~t~~~m~~~v~~n~~~~~~g~~~~~~~ 334 (336)
T KOG0069|consen 289 PLLTLDNVVILPHIGSATLETREKMAEIVLNNLLAFFSGKPLLTPV 334 (336)
T ss_pred chhcccceeEecccccCcHHHHHHHHHHHHHHHHHHHccCCCCCcC
Confidence 9999999999999999999999999999999999999999875544
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-54 Score=463.60 Aligned_cols=284 Identities=29% Similarity=0.432 Sum_probs=249.3
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
+||++.+.++ ...+.+++.+++.+... .+...+.++++|++++++.+++++++++. ++||+|+++++|+||||++
T Consensus 1 mkI~~d~~~p-~~~~~~~~~~~v~~~~~--~~~~~~~l~daD~liv~~~t~v~~~ll~~--~~Lk~I~~~~~G~D~iD~~ 75 (381)
T PRK00257 1 MKIVADENIP-LLDAFFAGFGEIRRLPG--RAFDRAAVRDADVLLVRSVTRVDRALLEG--SRVRFVGTCTIGTDHLDLD 75 (381)
T ss_pred CEEEEecCch-hHHHHHhhCCcEEEcCC--cccCHHHhCCceEEEEeCCCCCCHHHhcC--CCCeEEEECCccccccCHH
Confidence 5789888875 33566666667765432 11223467999999999988999999974 5899999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
+|+++||.|+|+||+|+.+||||++++||+++|+ .|.+|.||||||||+|+||+.+|+++++
T Consensus 76 ~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~------------------~g~~l~gktvGIIG~G~IG~~va~~l~a 137 (381)
T PRK00257 76 YFAEAGITWSSAPGCNARGVVDYVLGSLLTLAER------------------EGVDLAERTYGVVGAGHVGGRLVRVLRG 137 (381)
T ss_pred HHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcc------------------cCCCcCcCEEEEECCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999884 2568999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCc----cccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP----TTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 251 ~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~----~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
|||+|++|||.... ...+..+.++++++++||+|++|+|+|+ .|++|++++.|++||+|++|||+|||++||+
T Consensus 138 ~G~~V~~~Dp~~~~---~~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~vVde 214 (381)
T PRK00257 138 LGWKVLVCDPPRQE---AEGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDEAFLASLRPGAWLINASRGAVVDN 214 (381)
T ss_pred CCCEEEEECCcccc---cccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCHHHHhcCCCCeEEEECCCCcccCH
Confidence 99999999986421 1123456799999999999999999999 5999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+||+++|++|++.||+||||+.||+ .+++|+.. |+++|||+|++|.|++.++...+++|+.+|+.+.......+
T Consensus 215 ~AL~~aL~~g~i~~a~LDV~e~EP~-~~~~L~~~-nvi~TPHiAg~s~e~~~r~~~~~~~nl~~~~~~~~~~~~~~ 288 (381)
T PRK00257 215 QALREALLSGEDLDAVLDVWEGEPQ-IDLELADL-CTIATPHIAGYSLDGKARGTAQIYQALCRFFGIPARVSLTD 288 (381)
T ss_pred HHHHHHHHhCCCcEEEEeCCCCCCC-CChhhhhC-CEEEcCccccCCHHHHHHHHHHHHHHHHHHHcCCCccchhc
Confidence 9999999999999999999999996 57889875 99999999999999999999999999999999886544443
|
|
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=451.37 Aligned_cols=267 Identities=22% Similarity=0.283 Sum_probs=235.7
Q ss_pred cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhh-----HHhcCceeecCCC-CChhhHHHHHHHHHHHH
Q 006212 128 ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA-----ATEFGCLVVNAPI-ANTVAAAEHGIALLASM 201 (656)
Q Consensus 128 i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~a-----a~~~GI~V~n~p~-~n~~~vAE~~lal~L~~ 201 (656)
..++|+++++.. +.++++ . ++||||++.|+|+|++|... +..+||.|+|+++ +++.+||||++++||++
T Consensus 36 ~~~a~~~~~~~~---~~~~l~-~-~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~ 110 (312)
T PRK15469 36 NDPADYALVWHP---PVEMLA-G-RDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHW 110 (312)
T ss_pred CccCeEEEEeCC---ChHHhc-c-CCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHH
Confidence 478999998653 467775 4 59999999999999998322 3458999999975 78999999999999999
Q ss_pred HhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHh
Q 006212 202 ARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL 281 (656)
Q Consensus 202 ~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell 281 (656)
+|+++++.+.+++|+|.+ ..+.++.||||||||+|.||+.+|++|++|||+|++||++.........-....++++++
T Consensus 111 ~r~~~~~~~~~~~~~w~~--~~~~~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~~~~~~~l~e~l 188 (312)
T PRK15469 111 FRRFDDYQALQNSSHWQP--LPEYHREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSRKSWPGVQSFAGREELSAFL 188 (312)
T ss_pred HcChHHHHHHHHhCCcCC--CCCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCCCCceeecccccHHHHH
Confidence 999999999999999975 245689999999999999999999999999999999998653211000011235799999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
++||+|++|+|+|++|+++++++.|++||+|++|||+|||++||++||+++|++|+|+||++|||+.||++.++|||.+|
T Consensus 189 ~~aDvvv~~lPlt~~T~~li~~~~l~~mk~ga~lIN~aRG~vVde~aL~~aL~~g~i~gaalDVf~~EPl~~~~pl~~~~ 268 (312)
T PRK15469 189 SQTRVLINLLPNTPETVGIINQQLLEQLPDGAYLLNLARGVHVVEDDLLAALDSGKVKGAMLDVFSREPLPPESPLWQHP 268 (312)
T ss_pred hcCCEEEECCCCCHHHHHHhHHHHHhcCCCCcEEEECCCccccCHHHHHHHHhcCCeeeEEecCCCCCCCCCCChhhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 006212 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (656)
Q Consensus 362 nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~ 403 (656)
|+++|||+|++|.+. ++...+.+|+..|++|+++.+.|+.
T Consensus 269 nvi~TPHiag~t~~~--~~~~~~~~n~~~~~~g~~~~~~V~~ 308 (312)
T PRK15469 269 RVAITPHVAAVTRPA--EAVEYISRTIAQLEKGERVCGQVDR 308 (312)
T ss_pred CeEECCcCCCCcCHH--HHHHHHHHHHHHHHcCCCCcccCCc
Confidence 999999999999885 4778889999999999999888874
|
|
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-53 Score=445.39 Aligned_cols=283 Identities=24% Similarity=0.399 Sum_probs=244.9
Q ss_pred eEEEeCCCCHhHHHHhhcC---CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 92 TILVSEKLGEAGLAILRSF---GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 92 ~ilv~~~l~~~~~~~l~~~---~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
++++..++.+...+.+.+. .++... ....++|+++++. + . ..+ ++||||+++|+|+||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~a~~~~~~~-~-----~-~~~-~~Lk~I~~~~aG~D~id 64 (303)
T PRK06436 2 NVYVNFPMSKKLLEICRDILDLDDVHWY---------PDYYDAEAILIKG-R-----Y-VPG-KKTKMIQSLSAGVDHID 64 (303)
T ss_pred eEEEEccCCHHHHHHHHhhcccceeEec---------cccCCCCEEEecC-C-----c-CCC-CCeEEEEECCcccCccc
Confidence 3666778888877765542 233321 1257889887654 2 1 123 58999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.+.|. |+++.+||||++++||+++|+++++++.+++|+|.+. .+.+|+||||||||+|+||+.+|+++
T Consensus 65 ~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~--~~~~L~gktvgIiG~G~IG~~vA~~l 141 (303)
T PRK06436 65 VSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQS--PTKLLYNKSLGILGYGGIGRRVALLA 141 (303)
T ss_pred HHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCC--CCCCCCCCEEEEECcCHHHHHHHHHH
Confidence 99999998887774 8999999999999999999999999999999999863 46899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
++|||+|++||++... .++ ...++++++++||+|++|+|++++|+++++++.|++||+|++|||+|||+++|+
T Consensus 142 ~afG~~V~~~~r~~~~-----~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~~~l~~mk~ga~lIN~sRG~~vd~ 216 (303)
T PRK06436 142 KAFGMNIYAYTRSYVN-----DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINSKMLSLFRKGLAIINVARADVVDK 216 (303)
T ss_pred HHCCCEEEEECCCCcc-----cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCHHHHhcCCCCeEEEECCCccccCH
Confidence 9999999999987432 122 245899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCCCccccC
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELSATAINA 403 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g-~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~ 403 (656)
++|+++|++|++.||++|||+.||++.++ .+||+++|||++ +.|.|+++++...+++|+.+|+.|++ .+.|+.
T Consensus 217 ~aL~~aL~~g~i~~a~lDV~~~EP~~~~~---~~~nviiTPHi~g~~t~e~~~~~~~~~~~ni~~~~~g~~-~~~V~~ 290 (303)
T PRK06436 217 NDMLNFLRNHNDKYYLSDVWWNEPIITET---NPDNVILSPHVAGGMSGEIMQPAVALAFENIKNFFEGKP-KNIVRK 290 (303)
T ss_pred HHHHHHHHcCCceEEEEccCCCCCCCccC---CCCCEEECCccccccCHHHHHHHHHHHHHHHHHHHcCCC-CceEch
Confidence 99999999999999999999999987665 589999999975 58999999999999999999999876 577763
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=353.33 Aligned_cols=176 Identities=46% Similarity=0.759 Sum_probs=159.3
Q ss_pred HHHHHHHHhchhHHHHHHHcccc-ccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH-HHHcCC
Q 006212 195 IALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGV 272 (656)
Q Consensus 195 lal~L~~~R~i~~~~~~~~~g~W-~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~-a~~~g~ 272 (656)
+++||+++|+++++++.+++|.| ......+.+++|+||||||+|.||+.+|+++++|||+|++|||+..... +...++
T Consensus 1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~ 80 (178)
T PF02826_consen 1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV 80 (178)
T ss_dssp HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE
T ss_pred ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhhhcccccc
Confidence 58999999999999999999999 3344678999999999999999999999999999999999999985444 667788
Q ss_pred eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 273 ~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++|||+.||++
T Consensus 81 ~~~~l~ell~~aDiv~~~~plt~~T~~li~~~~l~~mk~ga~lvN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~ 160 (178)
T PF02826_consen 81 EYVSLDELLAQADIVSLHLPLTPETRGLINAEFLAKMKPGAVLVNVARGELVDEDALLDALESGKIAGAALDVFEPEPLP 160 (178)
T ss_dssp EESSHHHHHHH-SEEEE-SSSSTTTTTSBSHHHHHTSTTTEEEEESSSGGGB-HHHHHHHHHTTSEEEEEESS-SSSSSS
T ss_pred eeeehhhhcchhhhhhhhhccccccceeeeeeeeeccccceEEEeccchhhhhhhHHHHHHhhccCceEEEECCCCCCCC
Confidence 88899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccCCcEEEcCCCC
Q 006212 353 KDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 353 ~~~~L~~~~nvilTPH~g 370 (656)
.++||+++||+++|||+|
T Consensus 161 ~~~~l~~~~nvi~TPH~a 178 (178)
T PF02826_consen 161 ADSPLWDLPNVILTPHIA 178 (178)
T ss_dssp TTHHHHTSTTEEEESS-T
T ss_pred CCChHHcCCCEEEeCccC
Confidence 899999999999999985
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR00719 sda_beta L-serine dehydratase, iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=315.02 Aligned_cols=186 Identities=17% Similarity=0.217 Sum_probs=172.1
Q ss_pred hHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEEE
Q 006212 417 YVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEER 496 (656)
Q Consensus 417 ~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~~ 496 (656)
+..+++|||++++||+++ .+++|+++|+|+++ .++++|+++.|+++|+|++..++ +|++||+.+||||||++.|.+
T Consensus 21 ht~laerlG~l~~ql~~~--~~~~I~i~~~Gsla-~t~~~~~~~~A~l~GlL~~~~~~-vn~vNA~~iAkerGI~v~~~~ 96 (208)
T TIGR00719 21 HTAGAAKIANVARSIFGN--EPEQIEFQFHGSFA-ETFKGHGTDRAIIGGILDFDPDD-DRIKTAFEIAEAAGIDIEFRT 96 (208)
T ss_pred HHHHHHHHHHHHHHHhcC--CCcEEEEEEEeeec-ccCCCchHHHHHHhhhcCCCCCc-hHHHHHHhhhhhcCceEEEEE
Confidence 678999999999999998 89999999999998 77999999999999999888875 999999999999999999987
Q ss_pred eecCCCCC-CCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCCCchhh
Q 006212 497 VVADSSPE-FPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (656)
Q Consensus 497 ~~~~~~~~-~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~ 574 (656)
.+. +. .|+|++++++++ .++..+++.|+++| |.+||++||||+||+.|++|+|++.|.|+||+|++
T Consensus 97 ~~~---~~~~~~n~v~i~v~~---------~~g~~~~v~Gts~ggg~~riv~idg~~vd~~~~g~~L~~~~~D~PG~Ig~ 164 (208)
T TIGR00719 97 EDA---GDNVHPNSAKITFSD---------EKGEEEELIGISIGGGAIEITEINGFAIEFRGEHPAILLEHNDKFGTIAG 164 (208)
T ss_pred CCC---CCCCCCCeEEEEEEc---------CCCCEEEEEEEEeCCCeEEEEEECCEEEEecCCccEEEEEeCCCCChHHH
Confidence 642 23 699999999973 33344899999997 79999999999999999999999999999999999
Q ss_pred HHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHH
Q 006212 575 VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEI 618 (656)
Q Consensus 575 V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L 618 (656)
|+++|++++|||++|+++|..++++|+|+|++|++++++++++|
T Consensus 165 vg~~Lg~~~iNIa~m~v~r~~~g~~Ai~vl~vD~~v~~~vl~~i 208 (208)
T TIGR00719 165 VANLLAGFEINIEHLETAKKDIGNIALLTIEIDKNIDDHIKDAI 208 (208)
T ss_pred HHHHHHhCCccEEEEEEEecCCCCEEEEEEEeCCCCCHHHHhhC
Confidence 99999999999999999999999999999999999999999975
|
This family of enzymes is not homologous to the pyridoxal phosphate-dependent threonine deaminases and eukaryotic serine deaminases. |
| >KOG0067 consensus Transcription factor CtBP [Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=268.15 Aligned_cols=293 Identities=29% Similarity=0.445 Sum_probs=249.1
Q ss_pred HhhcCCcEEEecCCCHhHHHhh-cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCC
Q 006212 106 ILRSFGNVECLYDLSPEALCEK-ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI 184 (656)
Q Consensus 106 ~l~~~~~v~~~~~~~~eel~~~-i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~ 184 (656)
+++....+-++...+..|+.++ +.++-+-+......++++-+|+.+ -||++.+.|.|+||+|+.+|.+.||.|+|.|+
T Consensus 48 ilk~~atvafcdaqstqeIhekvLneavgam~yh~i~l~reDlEkfk-alRv~~rig~g~dn~dikaAseL~iavC~ip~ 126 (435)
T KOG0067|consen 48 ILKDLATVAFCDAQSTQEIHEKVLNEAVGAMMYHTITLPREDLEKFK-ALRVIVRIGSGYDNIDIKAASELGIAVCNIPS 126 (435)
T ss_pred hhhcchheeeecccchHHHHHHHHHHhhhcceeeecccchhhHHHhh-hhceeeeeccccchhhhhhhhhheeeeecccc
Confidence 3555556666666666666553 333333333333568999999986 69999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccc-------cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-------VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 185 ~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~-------~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
..-+.+|+-++.++|.+.|+-....+.+++|.|....- .....+|.++|++|+|+.|+.++.++++||+.|+.
T Consensus 127 ~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~if 206 (435)
T KOG0067|consen 127 DAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAACGLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIF 206 (435)
T ss_pred hhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhhccccccccceeeeccccccceehhhhhcccceeee
Confidence 99999999999999999999999999999999975321 23468899999999999999999999999999999
Q ss_pred ECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 258 HDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 258 ~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
|||+...-..+.+|.+.+ ++++++.++|.+++||-+.+.+.++++.-.+..|++|++++|++||+++|+.+|.++|+.|
T Consensus 207 ydp~~~~g~~~~lg~~rVytlqd~~~~sd~~S~hc~~~~~~h~lin~~tikqm~qGaflvnta~gglvdekaLaqaLk~G 286 (435)
T KOG0067|consen 207 YDPYLIDGIDKSLGLQRVYTLQDLLYQSDCVSLHCNLNEHNHELINDFTIKQMRQGAFLVNTARGGLVDEKALAQALKSG 286 (435)
T ss_pred ecchhhhhhhhhcccceecccchhhhhccceeeecccCcccccccccccceeecccceEeeecccccCChHHHHhhhccC
Confidence 999986666677788765 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEeeccCCCCC-CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC---CccccCCCC
Q 006212 337 VVAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS---ATAINAPMV 406 (656)
Q Consensus 337 ~i~gA~lDV~~~EP~-~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~---~~~Vn~p~~ 406 (656)
++.|++ |- -...||.+.||.++|||.+++++.+..++...++..+...+.|..+ +++||..+.
T Consensus 287 ~i~~aa-------~~~~~~~~l~d~pn~ic~~~ta~~~e~~~~e~re~aa~eiR~ai~g~ip~~l~~cvnkE~~ 353 (435)
T KOG0067|consen 287 RIRGAA-------PRSFKQGPLKDAPNLICTPHTAWYSEAASVELREVAALEIRRAITGRIPDSLRNCVNKEFS 353 (435)
T ss_pred ceeccc-------CcccccccccCCCCCCCCcccchhhHHHHHHHHHHHhhhhhhccCCCCchhHHHHHhhhhc
Confidence 999987 11 1346888999999999999999999999888888888888887654 567775433
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.6e-26 Score=245.47 Aligned_cols=325 Identities=21% Similarity=0.232 Sum_probs=222.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCe-----ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE-----LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~-----~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|+||+++|+.++..|++|.+|++.... ......+.. ..++++++++||+|++|+|. ..+..++.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~- 78 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLA- 78 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHH-
Confidence 57999999999999999999999888777765432 222233322 23678889999999999995 34555553
Q ss_pred HHHh-cCCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEE---EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH
Q 006212 304 ETFA-KMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQ---AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ 377 (656)
Q Consensus 304 ~~l~-~mK~gailINvaRg~ivde~aL~~aL~~g--~i~g---A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~ 377 (656)
+... .++++++|+|+++-+.-..+++.+.+..+ .+.+ ++.+..+.+ .++..||++.++++||+-+.. .+..
T Consensus 79 ~l~~~~l~~~~ivtDv~SvK~~i~~~~~~~~~~~~~~ig~HPMaG~e~sG~~--aa~~~lf~g~~~il~~~~~~~-~~~~ 155 (359)
T PRK06545 79 ELADLELKPGVIVTDVGSVKGAILAEAEALLGDLIRFVGGHPMAGSHKSGVA--AARADLFENAPWVLTPDDHTD-PDAV 155 (359)
T ss_pred HHhhcCCCCCcEEEeCccccHHHHHHHHHhcCCCCeEEeeCCcCcCchhhHH--HhcHHHHCCCcEEEecCCCCC-HHHH
Confidence 2233 47899999999987654444443332221 2221 111122211 234579999999999976443 2222
Q ss_pred HHHHHHHHHHHHHHHcCCCCCcc-cc----------CCCCChhhhhhccchHHHHHHHh---HHHHHhhcCCCCceEEEE
Q 006212 378 EGVAIEIAEAVVGALRGELSATA-IN----------APMVPSEVLSELAPYVVLAKKLG---RLAVQLVSGGSGIKSVKL 443 (656)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~-Vn----------~p~~~~~~~~~l~p~~~laerlG---~l~~qL~~g~~~~k~i~i 443 (656)
+.+.++++.-..... +. .-|+|+-+... ++..++ ..+.+|+++ +|+++++
T Consensus 156 --------~~v~~l~~~lGa~~v~~~~~~HD~~~A~vshlPh~ia~a------l~~~~~~~~~~~~~la~~--gfrd~tR 219 (359)
T PRK06545 156 --------AELKDLLSGTGAKFVVLDAEEHDRAVALVSHLPHILASS------LAARLAGEHPLALRLAAG--GFRDITR 219 (359)
T ss_pred --------HHHHHHHHHcCCEEEECCHHHHhHHHhHhccHHHHHHHH------HHHhhccCchHHHhhhcc--cccCCcc
Confidence 233333333322221 11 11444433322 233332 345678888 9999999
Q ss_pred EEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccce
Q 006212 444 IYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAA 523 (656)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~ 523 (656)
++.+++. +|.++...|+..+...|+.+..+.-.+.++..-.+...|.-.|.+.. .+++.+..+-.+
T Consensus 220 ia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~~~------~~r~~~~~~~~~------- 285 (359)
T PRK06545 220 IASSDPG-MWRDILESNAEALLDALDEWIEDLDRARDALESGDAEAIAELFDAGK------AGRDRLPGKHGG------- 285 (359)
T ss_pred ccCCCHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH------HHHHhCccccCC-------
Confidence 9999998 99999999999999999999988778888777666666665554433 344443332211
Q ss_pred ecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE
Q 006212 524 AVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA 603 (656)
Q Consensus 524 ~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~ 603 (656)
..++++.|+|..+|+||.|+.|+++|++++|||.++++.+.+++..+++.
T Consensus 286 ------------------------------~~~~~~~~~v~v~d~pg~~~~~~~~~~~~~i~i~~~~i~~~~~~~~g~~~ 335 (359)
T PRK06545 286 ------------------------------AIPSFYDLYVDVPDEPGVIARVTAILGEEGISIENLRILEAREDIHGVLQ 335 (359)
T ss_pred ------------------------------CCCcceEEEEeCCCCCCHHHHHHHHHHHcCCCeecceeeeccCCcCceEE
Confidence 55789999999999999999999999999999999999999988999999
Q ss_pred EEeCCCCCHHHHHHHh
Q 006212 604 IGVDEEPNQDSLKEIG 619 (656)
Q Consensus 604 i~~D~~~~~e~l~~L~ 619 (656)
|.++.+.+.+...++.
T Consensus 336 ~~~~~~~~~~~~~~~~ 351 (359)
T PRK06545 336 ISFKNEEDRERAKALL 351 (359)
T ss_pred EEeCCHHHHHHHHHHH
Confidence 9999887765555544
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=7.4e-22 Score=213.36 Aligned_cols=310 Identities=16% Similarity=0.165 Sum_probs=208.0
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhc-CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH-
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKG-LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE- 304 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~-~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~- 304 (656)
.-.||+|||+ |.||+++|+.++. +|.+|++||+... ...++++.+++||+|++|+|.. .+..++.+-
T Consensus 3 ~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~~d~---------~~~~~~~~v~~aDlVilavPv~-~~~~~l~~l~ 72 (370)
T PRK08818 3 AQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDPADP---------GSLDPATLLQRADVLIFSAPIR-HTAALIEEYV 72 (370)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcCCcc---------ccCCHHHHhcCCCEEEEeCCHH-HHHHHHHHHh
Confidence 4579999999 9999999999995 5999999998410 1235788899999999999944 345555321
Q ss_pred HH-hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC--CCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 305 TF-AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK--DSKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 305 ~l-~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~--~~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.+ ..+|++++|+|+++-+---.+++. +.+ .++-+..|+.. .+.+|++.+||+||.- ..+.
T Consensus 73 ~~~~~l~~~~iVtDVgSvK~~i~~~~~---~~~------~~fVG~HPMaG~E~s~lf~g~~~iltp~~---~~~~----- 135 (370)
T PRK08818 73 ALAGGRAAGQLWLDVTSIKQAPVAAML---ASQ------AEVVGLHPMTAPPKSPTLKGRVMVVCEAR---LQHW----- 135 (370)
T ss_pred hhhcCCCCCeEEEECCCCcHHHHHHHH---hcC------CCEEeeCCCCCCCCCcccCCCeEEEeCCC---chhH-----
Confidence 11 237999999999986632222322 111 13455677642 3578999999999962 1121
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchH---------HHHHHH-------hHHHH--HhhcCCCCce----
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV---------VLAKKL-------GRLAV--QLVSGGSGIK---- 439 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~---------~laerl-------G~l~~--qL~~g~~~~k---- 439 (656)
.+.+.++++....... .++++.++.+.-++ .++..+ ..+.. .+.++ +|+
T Consensus 136 ---~~~v~~l~~~~Ga~v~----~~~aeeHD~~~A~vS~LsHl~~l~~~~~~~~~~~~~~~~~~~~~f~~~--gFr~d~t 206 (370)
T PRK08818 136 ---SPWVQSLCSALQAECV----YATPEHHDRVMALVQAMVHATHLAQAGVLRDYAPLLGELRALMPYRSA--SFELDTA 206 (370)
T ss_pred ---HHHHHHHHHHcCCEEE----EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhccccch--hhHHHhh
Confidence 1223333433332221 34455555444322 111111 11111 34555 788
Q ss_pred EEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEE---EEEeecCCCCCCC-CceEE----
Q 006212 440 SVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRIS---EERVVADSSPEFP-IDSIQ---- 511 (656)
Q Consensus 440 ~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~---~~~~~~~~~~~~~-~ntv~---- 511 (656)
++++++++++. ||.+++..|+ .+...|+.+.+....+.++..--++.+|.-. |..++.- .+ ++.++
T Consensus 207 ~iTRIAss~P~-mW~dI~~~N~-~i~~~l~~~~~~L~~l~~~i~~~D~~~~~~~~~~f~~a~~~----~~~r~~~~~~~~ 280 (370)
T PRK08818 207 VIARILSLNPS-IYEDIQFGNP-YVGEMLDRLLAQLQELRALVAQGDDAARARFRAQFLHANAQ----ALQEDALAAGNY 280 (370)
T ss_pred hcchhhcCCHH-HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh----hcchhhCCcccc
Confidence 77899999998 9999999999 6777888888887777777776666666655 4444310 14 45544
Q ss_pred -EEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeec----CccEEEEEec-CCCCchhhHHhhhhcCCcc
Q 006212 512 -VQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASL----EGNLILCRQV-DQPGMIGKVGNILGEHNVN 585 (656)
Q Consensus 512 -i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g----~~~~Llv~~~-D~PGvIa~V~~iL~~~~IN 585 (656)
.+-++ +.+ +.+.|+|..+ |+||.|++|.++|++++||
T Consensus 281 ~~~~~g-------------------------------------~~~~~~~~~~~l~~~v~~d~pG~L~~vl~~la~~~IN 323 (370)
T PRK08818 281 TYERVG-------------------------------------YLLADLTEPLTLSVYLPEDRPGSLRTLLHVFEQHGVN 323 (370)
T ss_pred cccccc-------------------------------------cccCCCCcceEEEEECCCCCCChHHHHHHHHHHcCcc
Confidence 22211 444 6889999885 9999999999999999999
Q ss_pred ccceEeeeeccCccEEEEEEeCCCCCHHHHHH
Q 006212 586 VNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617 (656)
Q Consensus 586 I~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~ 617 (656)
|.++++.+.+++..+ ..+++..+.+...+..
T Consensus 324 it~Ies~~~r~~~y~-f~i~~~~~~~~~~~~~ 354 (370)
T PRK08818 324 LSSIHSSRTPAGELH-FRIGFEPGSDRAALAR 354 (370)
T ss_pred cceEEEecccCceEE-EEEEEeccccHHHHHH
Confidence 999999888888777 7888888766655543
|
|
| >PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-21 Score=178.89 Aligned_cols=101 Identities=43% Similarity=0.549 Sum_probs=91.4
Q ss_pred EEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhH
Q 006212 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAA 172 (656)
Q Consensus 93 ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa 172 (656)
||++++++++.++.|++..++.+....+.+++.+.++++|++++++.+++++++++++ |+||+|++.|+|+||||+++|
T Consensus 1 ili~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~l~~~d~ii~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~a 79 (133)
T PF00389_consen 1 ILITDPLPDEEIERLEEGFEVEFCDSPSEEELAERLKDADAIIVGSGTPLTAEVLEAA-PNLKLISTAGAGVDNIDLEAA 79 (133)
T ss_dssp EEESSS-SHHHHHHHHHTSEEEEESSSSHHHHHHHHTTESEEEESTTSTBSHHHHHHH-TT-SEEEESSSSCTTB-HHHH
T ss_pred eEEeccCCHHHHHHHHCCceEEEeCCCCHHHHHHHhCCCeEEEEcCCCCcCHHHHhcc-ceeEEEEEcccccCcccHHHH
Confidence 7999999999999999933888888889999999999999999998777999999998 699999999999999999999
Q ss_pred HhcCceeecCCCCChhhHHHHH
Q 006212 173 TEFGCLVVNAPIANTVAAAEHG 194 (656)
Q Consensus 173 ~~~GI~V~n~p~~n~~~vAE~~ 194 (656)
+++||.|+|+||+++.+||||+
T Consensus 80 ~~~gI~V~n~~g~~~~aVAE~a 101 (133)
T PF00389_consen 80 KERGIPVTNVPGYNAEAVAEHA 101 (133)
T ss_dssp HHTTSEEEE-TTTTHHHHHHHH
T ss_pred hhCeEEEEEeCCcCCcchhccc
Confidence 9999999999999999999999
|
The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A .... |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-20 Score=204.14 Aligned_cols=175 Identities=22% Similarity=0.311 Sum_probs=143.7
Q ss_pred cceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 153 ~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++=++ -.++|+..+- ++..-+.||+|+|+|++++.+++|+++++++++. +..+|.+ +..+.||
T Consensus 190 ~i~G~~EeTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~--------~~~LaGK 255 (476)
T PTZ00075 190 KIVGVSEETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRAT--------DVMIAGK 255 (476)
T ss_pred ccEeeeecchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhc--------CCCcCCC
Confidence 344433 4678887752 3344457899999999999999999999999888 3344443 4689999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|+|+|.||+.+|+++++|||+|+++++... ...+...|+..+++++++++||+|++|+ .+.++|+.+.|+.|
T Consensus 256 tVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~~~leell~~ADIVI~at----Gt~~iI~~e~~~~M 331 (476)
T PTZ00075 256 TVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQVVTLEDVVETADIFVTAT----GNKDIITLEHMRRM 331 (476)
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCceeccHHHHHhcCCEEEECC----CcccccCHHHHhcc
Confidence 999999999999999999999999999976542 2245557888889999999999999985 37889999999999
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
|+|++|+|+||+ |++.+.++|+.+. ++|+++.+|..
T Consensus 332 KpGAiLINvGr~---d~Ei~i~aL~~~~----~vdv~evep~v 367 (476)
T PTZ00075 332 KNNAIVGNIGHF---DNEIQVAELEAYP----GIEIVEIKPQV 367 (476)
T ss_pred CCCcEEEEcCCC---chHHhHHHHHhcC----CceeecccCCC
Confidence 999999999999 6777778887643 68999999864
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.3e-19 Score=184.14 Aligned_cols=150 Identities=22% Similarity=0.379 Sum_probs=127.4
Q ss_pred CCCHHHHHhcCCcceeEEecccccCccchh-hHHhcCceee------cCCCCChhhHHHHHHHHHHHHHhchhHHHHHHH
Q 006212 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQ-AATEFGCLVV------NAPIANTVAAAEHGIALLASMARNVSQADASIK 213 (656)
Q Consensus 141 ~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~-aa~~~GI~V~------n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~ 213 (656)
+++++++++++ .++...+|+++.|++ +|+++||.|+ |++.+|+.++||+++++++..
T Consensus 81 ~l~~~~l~~~~----~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~------------ 144 (287)
T TIGR02853 81 VLTPELLESTK----GHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEH------------ 144 (287)
T ss_pred cccHHHHHhcC----CCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHh------------
Confidence 36788888763 477788999999998 9999999999 999999999999999877732
Q ss_pred ccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec---CHHHHhccCCEEEE
Q 006212 214 AGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---SFDQALATADFISL 289 (656)
Q Consensus 214 ~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l 289 (656)
.+.+++|++++|+|+|.||+.+|++|+++|++|.++|++. ....+...|...+ +++++++++|+|++
T Consensus 145 ---------~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVin 215 (287)
T TIGR02853 145 ---------TDFTIHGSNVMVLGFGRTGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVIN 215 (287)
T ss_pred ---------cCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEE
Confidence 2458899999999999999999999999999999999875 2333445566543 56788999999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
|+|.. +++++.++.||+++++||++.
T Consensus 216 t~P~~-----ii~~~~l~~~k~~aliIDlas 241 (287)
T TIGR02853 216 TIPAL-----VLTADVLSKLPKHAVIIDLAS 241 (287)
T ss_pred CCChH-----HhCHHHHhcCCCCeEEEEeCc
Confidence 99954 678889999999999999996
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.2e-16 Score=163.36 Aligned_cols=243 Identities=15% Similarity=0.123 Sum_probs=149.9
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe--ecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
+|||||+|.||+++|+.|+..|++|.+||++. ..+.+.+.|.. ..+..+.+++||+|++|+|... ...++ ++...
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~~~-~~~~~-~~l~~ 79 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPIGL-LLPPS-EQLIP 79 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCHHH-HHHHH-HHHHH
Confidence 79999999999999999999999999999875 34555566642 2222356899999999999432 33333 44556
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee-ccCCCCC---CCCCccccCCcEEEcCCCCCCcHHHHHHHHHH
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD-VFTEEPP---AKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD-V~~~EP~---~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~ 383 (656)
.++++++++|++.-+.-..+++.+.. ...+. .+ .++.|.. .+...||..+++++||+-+.. .++.+
T Consensus 80 ~l~~~~ii~d~~Svk~~~~~~~~~~~-~~~v~---~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~-~~~~~----- 149 (279)
T PRK07417 80 ALPPEAIVTDVGSVKAPIVEAWEKLH-PRFVG---SHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTD-LNALA----- 149 (279)
T ss_pred hCCCCcEEEeCcchHHHHHHHHHHhh-CCcee---eCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCC-HHHHH-----
Confidence 68999999999976543333332211 12221 11 1222210 122348899999999986543 33222
Q ss_pred HHHHHHHHHcCCCCCcc-ccC----------CCCChhhhhhccchHHH--HHHHhHHHHHhhcCCCCceEEEEEEeecCC
Q 006212 384 IAEAVVGALRGELSATA-INA----------PMVPSEVLSELAPYVVL--AKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450 (656)
Q Consensus 384 ~~~~i~~~l~g~~~~~~-Vn~----------p~~~~~~~~~l~p~~~l--aerlG~l~~qL~~g~~~~k~i~i~~~Gs~a 450 (656)
.++.+.+.+ ..... +.. -|+|+-....+...+.. ...+-.++..++++ +||++|+++.+++.
T Consensus 150 ~v~~l~~~l---G~~~v~~~~~~hD~~~a~~shlp~~~a~~l~~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~~~p~ 224 (279)
T PRK07417 150 IVEELAVSL---GSKIYTADPEEHDRAVALISHLPVMVSAALIQTCGTEKDPSVLKLAQNLASS--GFADTSRVGGGNPE 224 (279)
T ss_pred HHHHHHHHc---CCEEEEcCHHHHHHHHHHHcchHHHHHHHHHHHHhhcccchhhHHhhhhccC--cccccccccCCChH
Confidence 223333333 22211 110 13333222122111100 01111222457777 99999999999998
Q ss_pred CCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCce
Q 006212 451 PDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLR 491 (656)
Q Consensus 451 ~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~ 491 (656)
+|.++...|+..+...|+.+..+.-.+.++..--++.++.
T Consensus 225 -~w~~i~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~~~l~ 264 (279)
T PRK07417 225 -LGVMMAEYNRAALLRSLASYRQSLDQLEELIEQENWSALE 264 (279)
T ss_pred -HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999888788988888767777777655555554
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.4e-14 Score=148.82 Aligned_cols=166 Identities=22% Similarity=0.337 Sum_probs=132.5
Q ss_pred hhcCCCeEEEEcCC----------------CCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCC----
Q 006212 126 EKISQCDALIVRSG----------------TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIA---- 185 (656)
Q Consensus 126 ~~i~~~d~liv~~~----------------~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~---- 185 (656)
+.+.++|+++.-.. ..++++.++.++ ++..+. .|.+.+++| +.|.++||.+++.+..
T Consensus 51 ~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~-~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~ 127 (296)
T PRK08306 51 EALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP-EHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVA 127 (296)
T ss_pred HHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC-CCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhh
Confidence 45788999885310 124688999885 666443 599999988 8999999999998864
Q ss_pred --ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-
Q 006212 186 --NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA- 262 (656)
Q Consensus 186 --n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~- 262 (656)
|+.++||.++.+++. ..+.++.|++++|+|+|.+|+.+++.|+++|++|.++|++.
T Consensus 128 ~~ns~~~aegav~~a~~---------------------~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~ 186 (296)
T PRK08306 128 ILNSIPTAEGAIMMAIE---------------------HTPITIHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSA 186 (296)
T ss_pred hhccHhHHHHHHHHHHH---------------------hCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 889999997765431 12356789999999999999999999999999999999985
Q ss_pred ChhHHHHcCCeec---CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 263 PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 263 ~~~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
....+.+.|+..+ ++.+.++++|+|+.++|. .+++++.++.|++++++||++.
T Consensus 187 ~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~-----~~i~~~~l~~~~~g~vIIDla~ 242 (296)
T PRK08306 187 HLARITEMGLSPFHLSELAEEVGKIDIIFNTIPA-----LVLTKEVLSKMPPEALIIDLAS 242 (296)
T ss_pred HHHHHHHcCCeeecHHHHHHHhCCCCEEEECCCh-----hhhhHHHHHcCCCCcEEEEEcc
Confidence 3445667787655 466788999999999983 4678889999999999999984
|
|
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.5e-15 Score=154.65 Aligned_cols=226 Identities=24% Similarity=0.276 Sum_probs=149.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEE--EEECCCC-ChhHHHHcCCee---cCH-HHHhccCCEEEEccCCCccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNV--IAHDPYA-PADKARAVGVEL---VSF-DQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~V--i~~d~~~-~~~~a~~~g~~~---~~l-~ell~~aDvV~l~~Plt~~T~~li 301 (656)
-++|+|+|+|.||+++|+.++..|+.| +++|++. ....+..+|+.. .+. .+.+..||+|++++|. ..|..++
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l 81 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVL 81 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHH
Confidence 468999999999999999999888866 5566654 345556677632 233 6778889999999994 3455555
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC---CCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA---KDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~---~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
. +....+|+|++|+|+++-+--..+++.+.+.+.. ++.+..|+. ++.+||++..||+||.-...
T Consensus 82 ~-~l~~~l~~g~iv~Dv~S~K~~v~~a~~~~~~~~~------~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~------ 148 (279)
T COG0287 82 K-ELAPHLKKGAIVTDVGSVKSSVVEAMEKYLPGDV------RFVGGHPMFGPEADAGLFENAVVVLTPSEGTE------ 148 (279)
T ss_pred H-HhcccCCCCCEEEecccccHHHHHHHHHhccCCC------eeEecCCCCCCcccccccCCCEEEEcCCCCCC------
Confidence 3 3333699999999999866544555544443321 223445653 35689999999999974333
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCC-----------CCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEee
Q 006212 379 GVAIEIAEAVVGALRGELSATAINAP-----------MVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRS 447 (656)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~Vn~p-----------~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~G 447 (656)
.+.+..+.+++.+...+-..-.| |+|+...-.+.....-.+....++..|+++ +|+++++++.+
T Consensus 149 ---~~~~~~~~~~~~~~ga~~v~~~~eeHD~~~a~vshLpH~~a~al~~~~~~~~~~~~~~~~~as~--~frd~tRia~~ 223 (279)
T COG0287 149 ---KEWVEEVKRLWEALGARLVEMDAEEHDRVMAAVSHLPHAAALALANALAKLETEELLVLKLASG--GFRDITRIASS 223 (279)
T ss_pred ---HHHHHHHHHHHHHcCCEEEEcChHHHhHHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHhcccc--chhhHHHHHcC
Confidence 33456677777765543332211 333332222221111111112335678888 99999999999
Q ss_pred cCCCCCcccccccHHHHHHhhhhhhhc
Q 006212 448 ARDPDDLDTRILRAMITKGIIEPISAS 474 (656)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~ 474 (656)
++. +|.+++..|...+...++.+..+
T Consensus 224 ~P~-m~~dI~~~N~~~~l~~i~~~~~~ 249 (279)
T COG0287 224 DPE-MYADIQLSNKEALLEAIERFAKS 249 (279)
T ss_pred ChH-HHHHHHHhCcHHHHHHHHHHHHH
Confidence 998 99999999999666667666654
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-15 Score=155.64 Aligned_cols=252 Identities=18% Similarity=0.192 Sum_probs=155.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.++|+|||+|.||+++|+.++..|. +|++||++. ..+.+.+.|+. ..++++.+++||+|++|+|.. .+..++
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~~-~~~~v~- 83 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPVG-ASGAVA- 83 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCHH-HHHHHH-
Confidence 4689999999999999999998774 899999875 34555666642 236888899999999999953 233333
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~E---P~~~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
++....++++++|+|++..+.-..+++.+.+..+ ++.++ --+++.| |......||...++++||+.++. .++.+
T Consensus 84 ~~l~~~l~~~~iv~dvgs~k~~~~~~~~~~~~~~~~~v~~-hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~-~~~~~ 161 (307)
T PRK07502 84 AEIAPHLKPGAIVTDVGSVKASVIAAMAPHLPEGVHFIPG-HPLAGTEHSGPDAGFAELFENRWCILTPPEGTD-PAAVA 161 (307)
T ss_pred HHHHhhCCCCCEEEeCccchHHHHHHHHHhCCCCCeEEeC-CCCCCCcccchhhcCHHHHCCCeEEEeCCCCCC-HHHHH
Confidence 3344568999999999875543334444433332 12111 0122221 11234578999999999976543 33322
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccC-----------CCCChhhhhhccchHH-HHHHHhHHHHHhhcCCCCceEEEEEEe
Q 006212 379 GVAIEIAEAVVGALRGELSATAINA-----------PMVPSEVLSELAPYVV-LAKKLGRLAVQLVSGGSGIKSVKLIYR 446 (656)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~Vn~-----------p~~~~~~~~~l~p~~~-laerlG~l~~qL~~g~~~~k~i~i~~~ 446 (656)
.+..+++.-.....+-. -|+|+-+...+..... +..........+++| +|+++++++.
T Consensus 162 --------~~~~l~~~lG~~~~~~~~~~hD~~~A~~s~lph~~a~~l~~~~~~~~~~~~~~~~~~~~~--gfrd~tRia~ 231 (307)
T PRK07502 162 --------RLTAFWRALGARVEEMDPEHHDLVLAITSHLPHLIAYTIVGTADDLERVTESEVIKYSAS--GFRDFTRIAA 231 (307)
T ss_pred --------HHHHHHHHcCCEEEEcCHHHHhHHHHHHhhHHHHHHHHHHHHHhhhcccchHHHHHhccc--cccccccccc
Confidence 23333332222222211 1333322222211110 000001112357777 9999999999
Q ss_pred ecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEE
Q 006212 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (656)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~ 495 (656)
|++. +|.++...|+..+...|+.+....-.+.++..-.++..+.-.|.
T Consensus 232 ~~~~-~w~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~ 279 (307)
T PRK07502 232 SDPT-MWRDVFLHNKDAVLEMLGRFTEDLAALQRAIRWGDGDALFDLFT 279 (307)
T ss_pred CChH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9998 99999999998887788888877667777776666556554444
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.54 E-value=2e-14 Score=158.47 Aligned_cols=121 Identities=21% Similarity=0.299 Sum_probs=107.1
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.||+++|+|+|.||+.+|+++++||++|+++++... ...+...|+..++++++++.+|+|+.+ ..++++++
T Consensus 249 ~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv~leEal~~ADVVI~t----TGt~~vI~ 324 (477)
T PLN02494 249 DVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVLTLEDVVSEADIFVTT----TGNKDIIM 324 (477)
T ss_pred CCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeeccHHHHHhhCCEEEEC----CCCccchH
Confidence 3458999999999999999999999999999999987753 345677788878899999999999973 44788999
Q ss_pred HHHHhcCCCCcEEEEcCC-CchhcHHHHHHh--HhcCCeEEEEeeccCCC
Q 006212 303 DETFAKMKKGVRIVNVAR-GGVIDEEALVRA--LDSGVVAQAALDVFTEE 349 (656)
Q Consensus 303 ~~~l~~mK~gailINvaR-g~ivde~aL~~a--L~~g~i~gA~lDV~~~E 349 (656)
.+.|+.||+|++|+|+|| +..||+++|.++ ++.+.+. +++|+|..+
T Consensus 325 ~e~L~~MK~GAiLiNvGr~~~eID~~aL~~~~~l~~~~i~-~~vd~y~~~ 373 (477)
T PLN02494 325 VDHMRKMKNNAIVCNIGHFDNEIDMLGLETYPGVKRITIK-PQTDRWVFP 373 (477)
T ss_pred HHHHhcCCCCCEEEEcCCCCCccCHHHHhhccccceeccC-CCceEEEcC
Confidence 999999999999999999 678999999987 8888886 999999987
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.5e-14 Score=151.81 Aligned_cols=233 Identities=15% Similarity=0.167 Sum_probs=146.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHh-ccCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell-~~aDvV~l~~Plt~~T~~li~~ 303 (656)
+-++++|||||+|.||+++|+.++..|++|++||+....+.+...|+... ++++++ .++|+|++|+|. ..+..++.+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~~~~~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~ 111 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRSDYSDIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS 111 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECccHHHHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh
Confidence 34678999999999999999999999999999998864455666777543 678876 479999999994 456666654
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC---CCccccCCcEEEcCCC---CCCcHHHH
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK---DSKLVQHENVTVTPHL---GASTKEAQ 377 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~---~~~L~~~~nvilTPH~---g~~T~ea~ 377 (656)
-....++++++|+|++.++-...+++.+.+..+. .+....|... ....+...+++++|+. ...+.++.
T Consensus 112 l~~~~l~~~~iviDv~SvK~~~~~~~~~~l~~~~------~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 185 (304)
T PLN02256 112 LPLQRLKRSTLFVDVLSVKEFPKNLLLQVLPEEF------DILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARC 185 (304)
T ss_pred hhhhccCCCCEEEecCCchHHHHHHHHHhCCCCC------eEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHH
Confidence 3355689999999999976655666666554431 1222333221 1134555556666542 22233322
Q ss_pred HHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chHHHHHHHhHHH---HHhhcCCCCceEEEEEEe--
Q 006212 378 EGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVVLAKKLGRLA---VQLVSGGSGIKSVKLIYR-- 446 (656)
Q Consensus 378 ~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~~laerlG~l~---~qL~~g~~~~k~i~i~~~-- 446 (656)
+.+.++++.-..+... ++++.++.+. |++ ++..+..+. ..+++| +|++.+++..
T Consensus 186 --------~~l~~l~~~lGa~v~~----~~~eeHD~~vA~iShLpH~-la~~L~~~~~~~~~~~~~--gfrd~tria~r~ 250 (304)
T PLN02256 186 --------ERFLDIFEEEGCRMVE----MSCEEHDRYAAGSQFITHT-VGRILGKMELESTPINTK--GYETLLRLVENT 250 (304)
T ss_pred --------HHHHHHHHHCCCEEEE----eCHHHHhHHHHhhhhHHHH-HHHHHHHcCCcccccccc--cHHHHHHHHHhh
Confidence 2333333322222222 2233333222 121 111111111 256677 8999988876
Q ss_pred --ecCCCCCcccccccHHHHHHhhhhhhhccccccchH
Q 006212 447 --SARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (656)
Q Consensus 447 --Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~ 482 (656)
+++. +|.+++..|+..+ ..|+.+.+....+.++.
T Consensus 251 ~~~~p~-lw~dI~~~N~~~~-~~i~~~~~~l~~~~~~l 286 (304)
T PLN02256 251 SSDSFD-LYYGLFMYNPNAT-EELERLELAFDSVKKQL 286 (304)
T ss_pred cCCCHH-HHHHHHHHChHHH-HHHHHHHHHHHHHHHHH
Confidence 9998 9999999999888 77877777644444443
|
|
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-14 Score=150.26 Aligned_cols=237 Identities=18% Similarity=0.196 Sum_probs=139.3
Q ss_pred EEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCCe--ecCHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE--LVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~~--~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|+|||+|.||+++|+.++..|. +|++||++. ..+.+.+.|+. ..+++++. +||+|++|+|.. .+..++ .+.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~~-~~~~~~-~~l 78 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPVD-AIIEIL-PKL 78 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcHH-HHHHHH-HHH
Confidence 79999999999999999997774 899999875 33455666753 33677765 599999999943 344444 334
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE----EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ----AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g----A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.. ++++++|+|++.-..--.+.+.+. ..+.+.+ +|...++.+ .+...|++...++++|.-+. +.+..+
T Consensus 79 ~~-l~~~~iv~d~gs~k~~i~~~~~~~-~~~~~v~~hPmaG~e~~Gp~--~a~~~l~~g~~~il~~~~~~-~~~~~~--- 150 (275)
T PRK08507 79 LD-IKENTTIIDLGSTKAKIIESVPKH-IRKNFIAAHPMAGTENSGPK--AAIKGLYEGKVVVLCDVEKS-GEKHQE--- 150 (275)
T ss_pred hc-cCCCCEEEECccchHHHHHHHHHh-cCCCEEecCCcCcCchhhHH--hccHHHhCCCeEEEecCCCC-CHHHHH---
Confidence 45 889999999876432222222221 1122212 111112211 23335788888999996433 222222
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chH---HHHHHH-----hHHHHHhhcCCCCceEEEEEEee
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV---VLAKKL-----GRLAVQLVSGGSGIKSVKLIYRS 447 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~---~laerl-----G~l~~qL~~g~~~~k~i~i~~~G 447 (656)
.+..+.+.+... .. .++++.++++. |++ .+++.+ ......++++ +|++.++++.+
T Consensus 151 --~v~~l~~~~G~~---~~----~~~~~~hD~~~a~vs~lph~~a~~l~~~~~~~~~~~~~~~~~~~--gfrd~tria~~ 219 (275)
T PRK08507 151 --RAKEIFSGLGMR---IV----YMDAKEHDLHAAYISHLPHIISFALANTVLKEEDERNIFDLAGG--GFRSMSRLAKS 219 (275)
T ss_pred --HHHHHHHHhCCE---EE----EeCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCChHHHHhhccc--chhhhhhcccC
Confidence 223333333211 11 11222222211 211 111111 1122456777 89999999999
Q ss_pred cCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCc
Q 006212 448 ARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGL 490 (656)
Q Consensus 448 s~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI 490 (656)
++. +|.++...|+..+...|+.+....-.+.++..--++..+
T Consensus 220 ~p~-l~~~i~~~N~~~~~~~l~~~~~~l~~~~~~l~~~d~~~~ 261 (275)
T PRK08507 220 SPA-MWSDIFKQNKENVLEAIDEFIKELEQFKQLIENEDWEEL 261 (275)
T ss_pred CHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 998 999999999987777888877765555555543333333
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=7.5e-14 Score=155.23 Aligned_cols=237 Identities=18% Similarity=0.193 Sum_probs=154.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
++|+||| +|.||+++|+.++..|++|.+||++... +.+.+.|+... ++++.+.+||+|++|+|. ..+..++ .+.
T Consensus 1 MkI~IIGG~G~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl-~~l 78 (437)
T PRK08655 1 MKISIIGGTGGLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVI-KEV 78 (437)
T ss_pred CEEEEEecCCHHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHH-HHH
Confidence 3799997 9999999999999999999999987532 44566677654 688899999999999995 3445555 444
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~-~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~ 384 (656)
...++++++|+|+++.+....+++.+.+..+. .+.+..|+. ...+++....+++||+-+. +.+ .
T Consensus 79 ~~~l~~~~iViDvsSvK~~~~~~l~~~~~~~~------~~V~~HPmaGp~~~~~~g~~~il~p~~~~-~~~--------~ 143 (437)
T PRK08655 79 APHVKEGSLLMDVTSVKERPVEAMEEYAPEGV------EILPTHPMFGPRTPSLKGQVVILTPTEKR-SNP--------W 143 (437)
T ss_pred HhhCCCCCEEEEcccccHHHHHHHHHhcCCCC------EEEEcCCCCCCCCcccCCCEEEEecCCCC-CHH--------H
Confidence 56689999999999866555566655554321 223334442 2346888999999997532 222 2
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhhcc------ch------HHHHHHHh---HHHHHhhcCCCCceEE----EEEE
Q 006212 385 AEAVVGALRGELSATAINAPMVPSEVLSELA------PY------VVLAKKLG---RLAVQLVSGGSGIKSV----KLIY 445 (656)
Q Consensus 385 ~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~------~~laerlG---~l~~qL~~g~~~~k~i----~i~~ 445 (656)
++.+.++++.......+ +.++.++.+. |+ .....++| ..+.+++++ +|++. ++++
T Consensus 144 ~~~v~~ll~~~G~~v~~----~~~e~HD~~~a~vs~lph~~a~al~~~l~~~g~~~~~~~~~a~~--~frd~~~~~tRIa 217 (437)
T PRK08655 144 FDKVKNFLEKEGARVIV----TSPEEHDRIMSVVQGLTHFAYISIASTLKRLGVDIKESRKFASP--IYELMIDIIGRIL 217 (437)
T ss_pred HHHHHHHHHHcCCEEEE----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhhcCh--hhHHHHHHHHHHh
Confidence 23344444433322222 1222222221 11 11122223 233467777 89985 9999
Q ss_pred eecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCce
Q 006212 446 RSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLR 491 (656)
Q Consensus 446 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~ 491 (656)
++++. +|.+++..|.. +...|+.+..+.-.+.++..-.++..+.
T Consensus 218 ~~~p~-lw~dI~~~N~~-~~~~l~~~~~~l~~l~~~l~~~D~~~l~ 261 (437)
T PRK08655 218 GQNPY-LYASIQMNNPQ-IPEIHETFIKECEELSELVKNGDREEFV 261 (437)
T ss_pred cCCHH-HHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99998 99999999994 6677877777655666655544444443
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-13 Score=148.67 Aligned_cols=121 Identities=26% Similarity=0.389 Sum_probs=105.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.|++|+|+|+|.||+.+|++++++|++|+++|..+ ....+...|+...+++++++.+|+|+.++. +.++++
T Consensus 190 ~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~~leeal~~aDVVItaTG----~~~vI~ 265 (406)
T TIGR00936 190 NLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKIGDIFITATG----NKDVIR 265 (406)
T ss_pred CCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeCCHHHHHhcCCEEEECCC----CHHHHH
Confidence 446899999999999999999999999999999997665 334566678877889999999999988654 678899
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHHhHhcCCeEEEEeeccCC
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTE 348 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~~aL~~g~i~gA~lDV~~~ 348 (656)
.+.+..||+|++|+|+||+.+ ||.++|.+++.+....+..+|+|.-
T Consensus 266 ~~~~~~mK~GailiN~G~~~~eId~~aL~~~~~~~~~~~~~v~~~~~ 312 (406)
T TIGR00936 266 GEHFENMKDGAIVANIGHFDVEIDVKALEELAVEKRNVRPQVDEYIL 312 (406)
T ss_pred HHHHhcCCCCcEEEEECCCCceeCHHHHHHHHhhccccccceEEEEe
Confidence 999999999999999999998 9999999988877777899998874
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.5e-13 Score=145.10 Aligned_cols=93 Identities=25% Similarity=0.422 Sum_probs=82.5
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..|+||||||||+|.||+.+|++|+++||+|++||+.. +.+.+...|++..++++++++||+|++|+|. ++++++++.
T Consensus 12 ~~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~sl~Eaak~ADVV~llLPd-~~t~~V~~~ 90 (335)
T PRK13403 12 ELLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVMSVSEAVRTAQVVQMLLPD-EQQAHVYKA 90 (335)
T ss_pred hhhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEECCHHHHHhcCCEEEEeCCC-hHHHHHHHH
Confidence 57999999999999999999999999999999997543 4455667788888999999999999999996 678999999
Q ss_pred HHHhcCCCCcEEEEc
Q 006212 304 ETFAKMKKGVRIVNV 318 (656)
Q Consensus 304 ~~l~~mK~gailINv 318 (656)
+.+..||+|++|+-.
T Consensus 91 eil~~MK~GaiL~f~ 105 (335)
T PRK13403 91 EVEENLREGQMLLFS 105 (335)
T ss_pred HHHhcCCCCCEEEEC
Confidence 999999999988653
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-13 Score=154.22 Aligned_cols=238 Identities=15% Similarity=0.148 Sum_probs=147.7
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhc-cCCEEEEccCCCcccccc
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
.|.++.+++|||||+|+||+++|++++++|++|++||+....+.+.+.|+... ++++++. ++|+|++|+| ...+..+
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~dr~~~~~~a~~~Gv~~~~~~~el~~~~aDvVILavP-~~~~~~v 441 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYSRSDYSDEAQKLGVSYFSDADDLCEEHPEVILLCTS-ILSTEKV 441 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEECChHHHHHHHcCCeEeCCHHHHHhcCCCEEEECCC-hHHHHHH
Confidence 46788999999999999999999999999999999998754455666787544 7888876 5999999999 4567777
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC-eEEEEeeccCCCCC----CCCCccccCCcEEEcCCCCCCcHH
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPP----AKDSKLVQHENVTVTPHLGASTKE 375 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~-i~gA~lDV~~~EP~----~~~~~L~~~~nvilTPH~g~~T~e 375 (656)
+.+.....||+|++|+|+++++-...+.+.+.+..+. +.+ +-=.++.|-. ....-||+. .++.++ .+
T Consensus 442 i~~l~~~~lk~g~ivvDv~SvK~~~~~~~~~~l~~~~~~v~-~HPm~G~e~~~~G~~~~~~lf~~-~~v~~~------~~ 513 (667)
T PLN02712 442 LKSLPFQRLKRSTLFVDVLSVKEFPRNLFLQHLPQDFDILC-THPMFGPESGKNGWNNLAFVFDK-VRIGSD------DR 513 (667)
T ss_pred HHHHHHhcCCCCcEEEECCCccHHHHHHHHHhccCCCceEe-eCCCCCccccccchhhhhhhccC-cEeCCC------cc
Confidence 7765555699999999999987555556555554432 221 0112222210 011124433 222221 11
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchHH-HHHHHhHHHH-------HhhcCCCCceEEE----E
Q 006212 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVV-LAKKLGRLAV-------QLVSGGSGIKSVK----L 443 (656)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~-laerlG~l~~-------qL~~g~~~~k~i~----i 443 (656)
. .+.++.+.+++.....+.. .++++.++...-+.. +-.-+|.... .++++ +|++++ +
T Consensus 514 ~-----~~~~~~l~~l~~~lGa~vv----~ms~eeHD~~~A~vShLpHlla~~L~~~~~~~~~~~~~--gfr~l~~Li~R 582 (667)
T PLN02712 514 R-----VSRCDSFLDIFAREGCRMV----EMSCAEHDWHAAGSQFITHTMGRLLEKLGLESTPINTK--GYETLLNLVEN 582 (667)
T ss_pred h-----HHHHHHHHHHHHHcCCEEE----EeCHHHHHHHHHHHHHHHHHHHHHHHHCCCcccccccH--HHHHHHHHHHh
Confidence 1 1122233344433332222 334444443322111 1112333333 23345 788887 9
Q ss_pred EEeecCCCCCcccccccHHHHHHhhhhhhhccccccchH
Q 006212 444 IYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNAD 482 (656)
Q Consensus 444 ~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~ 482 (656)
++++++. +|+++...|... ...|+.+....-.+.++.
T Consensus 583 ia~~~p~-l~~dI~~~N~~a-~~~l~~f~~~l~~~~~~l 619 (667)
T PLN02712 583 TAGDSFD-LYYGLFMYNVNA-MEQLERLDLAFESLKKQL 619 (667)
T ss_pred hcCCCHH-HHHHHHHHChHH-HHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999988 567877776644444444
|
|
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.5e-11 Score=133.74 Aligned_cols=211 Identities=20% Similarity=0.253 Sum_probs=140.0
Q ss_pred HhHHHHhhcCC-cEEEecCCCHhHHHh----hc--CCCeEEEEcCCCCCCHHHHHhc---CCcceeEE-ecccccCcc-c
Q 006212 101 EAGLAILRSFG-NVECLYDLSPEALCE----KI--SQCDALIVRSGTKVTRSVFEAA---NGKLKVVG-RAGVGIDNV-D 168 (656)
Q Consensus 101 ~~~~~~l~~~~-~v~~~~~~~~eel~~----~i--~~~d~liv~~~~~v~~e~l~~~---~~~LK~I~-~~g~GvD~i-D 168 (656)
+.....|.+.+ .|......+.+|... .+ ...|+++ ..+..++.-+-... .++++-++ -.++|+..+ .
T Consensus 87 d~vaaaL~~~gi~v~a~~~~~~~ey~~~~~~~l~~~~p~iii-DdGgdl~~~~~~~~~~~~~~i~G~~EeTttGv~rl~~ 165 (425)
T PRK05476 87 DDVAAALAAAGIPVFAWKGETLEEYWECIERALDGHGPNMIL-DDGGDLTLLVHTERPELLANIKGVTEETTTGVHRLYA 165 (425)
T ss_pred HHHHHHHHHCCceEEecCCCCHHHHHHHHHHHhcCCCCCEEE-ecccHHHHHHHHHhhHhHhccEeeeecchHHHHHHHH
Confidence 45555565543 443334456665422 22 2345444 44433433332221 12333332 468888875 3
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARR 247 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~ 247 (656)
+....+.+++|.|++..++...-|...+. ..+-|+.- ...+..+.|++++|+|+|.||+.+|++
T Consensus 166 ~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt---------------~~s~~~ai~rat~~~l~Gk~VlViG~G~IG~~vA~~ 230 (425)
T PRK05476 166 MAKDGALKFPAINVNDSVTKSKFDNRYGT---------------GESLLDGIKRATNVLIAGKVVVVAGYGDVGKGCAQR 230 (425)
T ss_pred HHHcCCCCCCEEecCCcccCccccccHHH---------------HhhhHHHHHHhccCCCCCCEEEEECCCHHHHHHHHH
Confidence 44445678999999999887755533221 12223210 012456899999999999999999999
Q ss_pred HhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch-hc
Q 006212 248 AKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-ID 325 (656)
Q Consensus 248 lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i-vd 325 (656)
++++|++|+++|+.. ....+...|+...+++++++.+|+|+.++. +.++++.+.+..||+|++++|+|+... +|
T Consensus 231 lr~~Ga~ViV~d~dp~ra~~A~~~G~~v~~l~eal~~aDVVI~aTG----~~~vI~~~~~~~mK~GailiNvG~~d~Eid 306 (425)
T PRK05476 231 LRGLGARVIVTEVDPICALQAAMDGFRVMTMEEAAELGDIFVTATG----NKDVITAEHMEAMKDGAILANIGHFDNEID 306 (425)
T ss_pred HHhCCCEEEEEcCCchhhHHHHhcCCEecCHHHHHhCCCEEEECCC----CHHHHHHHHHhcCCCCCEEEEcCCCCCccC
Confidence 999999999999775 334455668887789999999999988763 567899999999999999999999765 56
Q ss_pred HHHHHH
Q 006212 326 EEALVR 331 (656)
Q Consensus 326 e~aL~~ 331 (656)
.++|.+
T Consensus 307 ~~~L~~ 312 (425)
T PRK05476 307 VAALEE 312 (425)
T ss_pred hHHHhh
Confidence 776643
|
|
| >COG1760 SdaA L-serine deaminase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.30 E-value=8.8e-15 Score=148.93 Aligned_cols=196 Identities=18% Similarity=0.128 Sum_probs=176.4
Q ss_pred HHHHHHhHHHHHhhcCCCC---ceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEEE
Q 006212 419 VLAKKLGRLAVQLVSGGSG---IKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEE 495 (656)
Q Consensus 419 ~laerlG~l~~qL~~g~~~---~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~~ 495 (656)
.-+.|+|+.+++|.+. - ++++.+.+.++++ .++.++.++.|.+.|.+ ++...+.++.+.+.++.++||..++.
T Consensus 55 aGa~rigr~A~~l~~~--~~~~~~~v~~~a~a~~e-ena~Gg~~~~Apt~Ga~-G~~P~vl~~~~~~~~a~~~~i~~fl~ 130 (262)
T COG1760 55 AGALRIGRRARALFGE--LKNVPDWVNIYAYASFE-ENAAGGGTVTAPTAGAL-GIIPAVLRIKESFEIAAEKGIKIFLL 130 (262)
T ss_pred cccceechhHHHHHHH--HhhhhHHHHHHHHHhhH-hhccCCcEeeeccCccc-cCCcchHHHHHHhhhhhhhhhHhhhh
Confidence 3556888888888876 5 7899999999998 99999999999999999 56666799999999999999998887
Q ss_pred EeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCCCchhh
Q 006212 496 RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQPGMIGK 574 (656)
Q Consensus 496 ~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~PGvIa~ 574 (656)
.+...+ ..|+|+.+|... +++...+.|.+.| |.+.+++++|+.+++++..+++.+.|. +|++..
T Consensus 131 ~a~aig--~~~~nnAsIsga-----------e~gcq~evGsa~~maaa~l~el~Ggs~~q~~~a~~i~~~h~--lGltcd 195 (262)
T COG1760 131 TAGAIG--ALHPNNASISGA-----------EGGCQGEVGSAIGMGAAALTELNGGSPEQSGNAPEIAMEHN--LGLTCD 195 (262)
T ss_pred hccccc--ccccCcceEEec-----------cCceEEEeehhhhhHHHHHHHHhCCChHHhccccHHHHhcC--CCceeh
Confidence 665432 479999999864 5888999999998 789999999999999999999999997 999999
Q ss_pred -HHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEeec
Q 006212 575 -VGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 575 -V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
|+.++....||++.|...|...+.++.|+++.|..+.+++++.+++++...+++|.+.+
T Consensus 196 pVaglV~vpcI~rnam~a~rai~aa~~am~~~~~~~~~DevI~tM~~~g~~m~~~y~et~ 255 (262)
T COG1760 196 PVAGLVQVPCINRNAMGAVRAINGAKAAMAIEVDQRPLDEVIETMYETGKDMNVKYRETS 255 (262)
T ss_pred hhhchhhhhhhhHHHHHHHHHhhhhhhhheecCCCCChHHHHHHHHHhhhhcchhheecc
Confidence 99999999999999999999999999999999999999999999999999999998753
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.1e-11 Score=135.43 Aligned_cols=226 Identities=14% Similarity=0.098 Sum_probs=142.4
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
..++|+||| +|.||+++|+.++..|+.|.+||+... .+.++++++||+|++|+|... +..++ ++ +
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~~-----------~~~~~~~~~aDlVilavP~~~-~~~~~-~~-l 162 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDDW-----------DRAEDILADAGMVIVSVPIHL-TEEVI-AR-L 162 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCcc-----------hhHHHHHhcCCEEEEeCcHHH-HHHHH-HH-H
Confidence 558999999 999999999999999999999997521 246778899999999999553 45555 23 3
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCC-CCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAK-DSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~-~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~ 385 (656)
..+++|++|+|+++.+..-..++.+.+. +.+ .+..|+.. ....+....++++|+. ..++.+ .+
T Consensus 163 ~~l~~~~iv~Dv~SvK~~~~~~~~~~~~-~~f-------vg~HPm~G~~~~~~~~~~vv~~~~~---~~~~~~-----~~ 226 (374)
T PRK11199 163 PPLPEDCILVDLTSVKNAPLQAMLAAHS-GPV-------LGLHPMFGPDVGSLAKQVVVVCDGR---QPEAYQ-----WL 226 (374)
T ss_pred hCCCCCcEEEECCCccHHHHHHHHHhCC-CCE-------EeeCCCCCCCCcccCCCEEEEcCCC---CchHHH-----HH
Confidence 4489999999998865433444444332 222 22333321 1234556678888742 223222 22
Q ss_pred HHHHHHHcCCCCCccccCCCCChhhhhhcc------chH-HHHH--HHh------HHHHHhhcCCCCceE----EEEEEe
Q 006212 386 EAVVGALRGELSATAINAPMVPSEVLSELA------PYV-VLAK--KLG------RLAVQLVSGGSGIKS----VKLIYR 446 (656)
Q Consensus 386 ~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~-~lae--rlG------~l~~qL~~g~~~~k~----i~i~~~ 446 (656)
..+...+..... .+.++.++.+. |++ .++. .++ .....+.++ +|++ ++++++
T Consensus 227 ~~l~~~lG~~v~-------~~~~~~HD~~~a~vshLpH~~a~al~~~l~~~~~~~~~~~~~~~~--~fr~~la~~tRia~ 297 (374)
T PRK11199 227 LEQIQVWGARLH-------RISAVEHDQNMAFIQALRHFATFAYGLHLAKENVDLEQLLALSSP--IYRLELAMVGRLFA 297 (374)
T ss_pred HHHHHHCCCEEE-------ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHhcCh--HHHHHHHHHHHHHc
Confidence 333333322221 23333333322 221 1111 111 111234555 7999 999999
Q ss_pred ecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceEEE
Q 006212 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISE 494 (656)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v~~ 494 (656)
+++. +|.+++..|...+ ..|+.+......+.++..-.++..+.-.|
T Consensus 298 ~~p~-lw~dI~~~N~~~~-~~l~~~~~~l~~l~~~l~~~d~~~l~~~~ 343 (374)
T PRK11199 298 QDPQ-LYADIIMSSPENL-ALIKRYYQRFGEALELLEQGDKQAFIDSF 343 (374)
T ss_pred CCHH-HHHHHHHhChhHH-HHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9998 9999999999988 88888887766777777655555554433
|
|
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-11 Score=145.23 Aligned_cols=219 Identities=18% Similarity=0.200 Sum_probs=139.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|.||+++|+.++..| .+|++||++. ..+.+.+.|+. ..+++++++++|+|++|+|.. .+..++ +
T Consensus 4 ~~I~IIG~G~mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~~-~~~~vl-~ 81 (735)
T PRK14806 4 GRVVVIGLGLIGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPVL-AMEKVL-A 81 (735)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCHH-HHHHHH-H
Confidence 68999999999999999999887 5899999886 34555667763 336888899999999999943 334333 2
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC---------CCCCccccCCcEEEcCCCCCCcH
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP---------AKDSKLVQHENVTVTPHLGASTK 374 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~---------~~~~~L~~~~nvilTPH~g~~T~ 374 (656)
.....++++++|+|++..+....+.+.+.+.... ..+....|. +++..||...++++||+.... .
T Consensus 82 ~l~~~~~~~~ii~d~~svk~~~~~~l~~~~~~~~-----~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~-~ 155 (735)
T PRK14806 82 DLKPLLSEHAIVTDVGSTKGNVVDAARAVFGELP-----AGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETD-P 155 (735)
T ss_pred HHHHhcCCCcEEEEcCCCchHHHHHHHHhccccC-----CeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCC-H
Confidence 2334578899999999755333444544443321 233444553 234579999999999975443 3
Q ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcc-ccC----------CCCChhhhhhccchHHHHHHH-----hHHHHHhhcCCCCc
Q 006212 375 EAQEGVAIEIAEAVVGALRGELSATA-INA----------PMVPSEVLSELAPYVVLAKKL-----GRLAVQLVSGGSGI 438 (656)
Q Consensus 375 ea~~~~~~~~~~~i~~~l~g~~~~~~-Vn~----------p~~~~~~~~~l~p~~~laerl-----G~l~~qL~~g~~~~ 438 (656)
+..+ .+.++++.-..... ++. -|+|+... ..+++.+ ...+..++++ +|
T Consensus 156 ~~~~--------~~~~l~~~~G~~~~~~~~~~hD~~~a~~~~~ph~~~------~~l~~~l~~~~~~~~~~~~a~~--~f 219 (735)
T PRK14806 156 AALA--------RVDRLWRAVGADVLHMDVAHHDEVLAATSHLPHLLA------FSLVDQLANREDNLDIFRYAAG--GF 219 (735)
T ss_pred HHHH--------HHHHHHHHcCCEEEEcCHHHHhHHHHHhcchHHHHH------HHHHHHHhhcCChhHHHhhhcc--ch
Confidence 3222 22233322221111 110 13333111 1111111 1234578888 89
Q ss_pred eEEEEEEeecCCCCCcccccccHHHHHHhhhhhhh
Q 006212 439 KSVKLIYRSARDPDDLDTRILRAMITKGIIEPISA 473 (656)
Q Consensus 439 k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 473 (656)
++.++.+.+++. +|.++..+|...+...|+.+..
T Consensus 220 ~~~tRia~~~p~-~~~di~~~n~~~~~~~l~~~~~ 253 (735)
T PRK14806 220 RDFTRIAASDPV-MWHDIFLANKEAVLRALDHFRD 253 (735)
T ss_pred hcccccccCCHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 999999999998 9999999998766555555544
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.5e-11 Score=118.95 Aligned_cols=109 Identities=22% Similarity=0.330 Sum_probs=85.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc-HHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-DETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~-~~~l 306 (656)
++|||||+|.||+.+|++|...|++|.+||++. ..+.+.+.|+..+ ++.+++++||+|++|+|..++++.++. ...+
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~i~ 81 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGENIL 81 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTTHG
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhHHh
Confidence 589999999999999999999999999999886 3455666777665 899999999999999998777777652 2267
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~ 113 (163)
T PF03446_consen 82 AGLRPGKIIIDMSTISPETSRELAERLAAKGV 113 (163)
T ss_dssp GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTE
T ss_pred hccccceEEEecCCcchhhhhhhhhhhhhccc
Confidence 78999999999999998888888888877555
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.1e-12 Score=136.25 Aligned_cols=225 Identities=19% Similarity=0.143 Sum_probs=137.7
Q ss_pred HHHHHhcCC--CEEEEECCCC-ChhHHHHcCCee--cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 244 VARRAKGLG--MNVIAHDPYA-PADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 244 vA~~lk~~G--~~Vi~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+|+.|+..| .+|++||++. ..+.+.+.|+.. .+-.+.++++|+|++|+|.. .+..++ ++....+++|++|+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP~~-~~~~~l-~~~~~~~~~~~iv~Dv 78 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVPVS-AIEDVL-EEIAPYLKPGAIVTDV 78 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S-HH-HHHHHH-HHHHCGS-TTSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCCHH-HHHHHH-HHhhhhcCCCcEEEEe
Confidence 577787666 8999999987 556677788742 33367899999999999943 344444 3344458999999999
Q ss_pred CCCchhcHHHHHHhHhc-C-CeEE---EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006212 319 ARGGVIDEEALVRALDS-G-VVAQ---AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (656)
Q Consensus 319 aRg~ivde~aL~~aL~~-g-~i~g---A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~ 393 (656)
++-+---.+++.+.+.. . .+++ +|-+..+.+ .++..||+..++|+||+-... .+..+.+.++++
T Consensus 79 ~SvK~~~~~~~~~~~~~~~~~v~~HPM~G~e~~G~~--~a~~~lf~g~~~il~p~~~~~---------~~~~~~~~~l~~ 147 (258)
T PF02153_consen 79 GSVKAPIVEAMERLLPEGVRFVGGHPMAGPEKSGPE--AADADLFEGRNWILCPGEDTD---------PEALELVEELWE 147 (258)
T ss_dssp -S-CHHHHHHHHHHHTSSGEEEEEEESCSTSSSSGG--G-TTTTTTTSEEEEEECTTS----------HHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHhcCcccceeecCCCCCCccccch--hhcccccCCCeEEEeCCCCCh---------HHHHHHHHHHHH
Confidence 98666555666666662 2 3333 555555555 567789999999999986432 223344555555
Q ss_pred CCCCCccccC-----------CCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHH
Q 006212 394 GELSATAINA-----------PMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAM 462 (656)
Q Consensus 394 g~~~~~~Vn~-----------p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a 462 (656)
..+.+...-. .|+|+-+...+...+...........+++++ +|+++++++.+++. +|.+++..|+.
T Consensus 148 ~~Ga~~~~~~~eeHD~~~A~vshlpH~~a~al~~~~~~~~~~~~~~~~~a~~--~frd~tRia~~~p~-l~~~I~~~N~~ 224 (258)
T PF02153_consen 148 ALGARVVEMDAEEHDRIMAYVSHLPHLLASALANTLAELSSDDPDILRLAGG--GFRDMTRIASSDPE-LWADIFLSNPE 224 (258)
T ss_dssp HCT-EEEE--HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHGTH--HHHHHHGGGGS-HH-HHHHHHHHTHH
T ss_pred HCCCEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHhhcch--hHHhhcccccCChH-HHHHHHHHCHH
Confidence 4443322211 1333332222222111222222334567777 89999999999998 99999999999
Q ss_pred HHHHhhhhhhhccccccchHhH
Q 006212 463 ITKGIIEPISASFINLVNADFT 484 (656)
Q Consensus 463 ~l~GlL~~~~~~~vn~vNA~~i 484 (656)
.+...|+.+.....++.++..-
T Consensus 225 ~~~~~l~~~~~~L~~l~~~l~~ 246 (258)
T PF02153_consen 225 NLLEALDEFIKELNELREALEA 246 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 7777888888775555555543
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=99.23 E-value=5e-11 Score=114.61 Aligned_cols=104 Identities=33% Similarity=0.509 Sum_probs=76.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
...+.||++.|+|||.+|+.+|++|+++|.+|++++..+ ..-+|...|++..+++++++++|+++.++- ...++.
T Consensus 18 ~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~~~~~a~~~adi~vtaTG----~~~vi~ 93 (162)
T PF00670_consen 18 NLMLAGKRVVVIGYGKVGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVMTLEEALRDADIFVTATG----NKDVIT 93 (162)
T ss_dssp -S--TTSEEEEE--SHHHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE-HHHHTTT-SEEEE-SS----SSSSB-
T ss_pred ceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEecCHHHHHhhCCEEEECCC----CccccC
Confidence 567899999999999999999999999999999998775 445677789999999999999999988765 456789
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALVR 331 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~~ 331 (656)
.+.|.+||+|++|.|++.-.. +|.+.|.+
T Consensus 94 ~e~~~~mkdgail~n~Gh~d~Eid~~~L~~ 123 (162)
T PF00670_consen 94 GEHFRQMKDGAILANAGHFDVEIDVDALEA 123 (162)
T ss_dssp HHHHHHS-TTEEEEESSSSTTSBTHHHHHT
T ss_pred HHHHHHhcCCeEEeccCcCceeEeeccccc
Confidence 999999999999999987543 35555533
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-11 Score=142.43 Aligned_cols=239 Identities=15% Similarity=0.168 Sum_probs=143.1
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHh-ccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQAL-ATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell-~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
-+.++|||||+|+||+.+|+.++.+|++|++||+......+.+.|+... ++++++ .+||+|++|+|. ..+..++...
T Consensus 50 ~~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~A~~~Gv~~~~d~~e~~~~~aDvViLavP~-~~~~~vl~~l 128 (667)
T PLN02712 50 TTQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSRSDHSLAARSLGVSFFLDPHDLCERHPDVILLCTSI-ISTENVLKSL 128 (667)
T ss_pred CCCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcCCEEeCCHHHHhhcCCCEEEEcCCH-HHHHHHHHhh
Confidence 3457899999999999999999999999999998865556777787654 788866 579999999994 4677777664
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC---CccccCCcEEEcCCCCCCcHHHHHHHH
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLVQHENVTVTPHLGASTKEAQEGVA 381 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~~L~~~~nvilTPH~g~~T~ea~~~~~ 381 (656)
.+..||++++|+|+++-+..-.+++.+.+..+. ++....|+... ..-+....++++|.+.+...+ .
T Consensus 129 ~~~~l~~g~iVvDv~SvK~~~~~~l~~~l~~~~------~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~-----~ 197 (667)
T PLN02712 129 PLQRLKRNTLFVDVLSVKEFAKNLLLDYLPEDF------DIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEEL-----R 197 (667)
T ss_pred hhhcCCCCeEEEECCCCcHHHHHHHHHhcCCCC------eEEeeCCcCCCccccchhccCcEEEeeccCCCccc-----c
Confidence 446689999999998766433445555454432 22333443211 112334447777755322111 1
Q ss_pred HHHHHHHHHHHcCCCCCccccCCCCChhhhhhccchHH-HHHHHhHHHHHhhcCCCCc---------eEEEEEEeecCCC
Q 006212 382 IEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVV-LAKKLGRLAVQLVSGGSGI---------KSVKLIYRSARDP 451 (656)
Q Consensus 382 ~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~-laerlG~l~~qL~~g~~~~---------k~i~i~~~Gs~a~ 451 (656)
.+.++.+.++++....+.. .++++.++.+.-++. |-.-+|+.+..+.-+..++ +-+++++.+++.
T Consensus 198 ~~~~~~l~~l~~~lGa~v~----~ms~eeHD~~~A~vshLpH~la~~L~~~~~~~~~~~~~~~~~~l~l~~Ria~~~p~- 272 (667)
T PLN02712 198 VSRCKSFLEVFEREGCKMV----EMSCTEHDKYAAESQFITHTVGRVLEMLKLESTPINTKGYESLLDLVENTCGDSFD- 272 (667)
T ss_pred HHHHHHHHHHHHHcCCEEE----EeCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccHHHHHHHHHHHhcCCHH-
Confidence 1222333333332222221 334444444332221 1112333333222100011 124677889998
Q ss_pred CCcccccccHHHHHHhhhhhhhccccccchHh
Q 006212 452 DDLDTRILRAMITKGIIEPISASFINLVNADF 483 (656)
Q Consensus 452 ~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~ 483 (656)
+|+++...|+ .+...|+.+......+..+.+
T Consensus 273 L~~dI~~~N~-~~~~~l~~~~~~l~~~~~~l~ 303 (667)
T PLN02712 273 LYYGLFMYNK-NSLEMLERLDLAFEALRKQLF 303 (667)
T ss_pred HHHHHHHhCH-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 445578887776555555554
|
|
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4e-11 Score=125.46 Aligned_cols=123 Identities=20% Similarity=0.236 Sum_probs=102.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-C-hhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~ 304 (656)
.+|||||+|.||.+||++|...|+.|.+||+.. . .+.+.+.|.... +..+++++||+|++|+|..++.+.++. ..
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g 80 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENG 80 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccc
Confidence 479999999999999999999999999999986 3 455666688665 789999999999999999998888774 56
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
.++.||||.++||++.........+.+.+++..+...---|.+..+..
T Consensus 81 ~~~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A 128 (286)
T COG2084 81 LLEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGA 128 (286)
T ss_pred hhhcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhh
Confidence 888899999999999999999999999999876633322266666543
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.3e-10 Score=122.67 Aligned_cols=121 Identities=16% Similarity=0.266 Sum_probs=95.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||+.+|+++...|++|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|....++.++. ...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~ 82 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGI 82 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchH
Confidence 579999999999999999999999999999986 3344556677554 789999999999999998777776653 335
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
+..+++|.+++|+++......+++.+.+++..+...--.|++.+|
T Consensus 83 ~~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~ 127 (296)
T PRK11559 83 IEGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEP 127 (296)
T ss_pred hhcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHH
Confidence 677899999999999998878888887776544322223555554
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=99.11 E-value=2e-10 Score=121.11 Aligned_cols=108 Identities=19% Similarity=0.257 Sum_probs=88.9
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccc-c-HHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF-N-DETF 306 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li-~-~~~l 306 (656)
+|||||+|.||+.+|+++...|++|.+||++. ..+.+.+.|... .++++++++||+|++|+|..+.++.++ + ...+
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~ 80 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGII 80 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHh
Confidence 48999999999999999999999999999886 334455666643 478899999999999999877776664 3 2356
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+++|+++||+++....+.+++.+.+++..+
T Consensus 81 ~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~ 112 (291)
T TIGR01505 81 EGAKPGKTLVDMSSISPIESKRFAKAVKEKGI 112 (291)
T ss_pred hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 77899999999999998888889888887533
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=6.5e-10 Score=117.78 Aligned_cols=110 Identities=16% Similarity=0.263 Sum_probs=90.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||.++|+++...|++|.+||++. ..+.+.+.|+.. .++.+++++||+|++|+|....++.++. ...
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i 81 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGV 81 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccH
Confidence 479999999999999999999999999999986 334445566644 4788999999999999997766666653 245
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+..+++|.++||++++.....+.+.+.+.+..+.
T Consensus 82 ~~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~ 115 (296)
T PRK15461 82 CEGLSRDALVIDMSTIHPLQTDKLIADMQAKGFS 115 (296)
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCc
Confidence 6678999999999999999999998888876653
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.3e-09 Score=120.01 Aligned_cols=103 Identities=29% Similarity=0.453 Sum_probs=89.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+..+.|++++|+|+|.||..+|++++++|++|+++|+.. ....+...|+..+++++.++.+|+|+.|+. +.++++
T Consensus 197 ~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~~~~e~v~~aDVVI~atG----~~~~i~ 272 (413)
T cd00401 197 DVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVMTMEEAVKEGDIFVTTTG----NKDIIT 272 (413)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEccHHHHHcCCCEEEECCC----CHHHHH
Confidence 557899999999999999999999999999999998875 456788889987788899999999998764 456788
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~ 330 (656)
...+..||+|++++|+|+..+ +|..+|.
T Consensus 273 ~~~l~~mk~GgilvnvG~~~~eId~~~L~ 301 (413)
T cd00401 273 GEHFEQMKDGAIVCNIGHFDVEIDVKGLK 301 (413)
T ss_pred HHHHhcCCCCcEEEEeCCCCCccCHHHHH
Confidence 888999999999999999876 6766664
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.02 E-value=6.7e-10 Score=118.80 Aligned_cols=95 Identities=25% Similarity=0.424 Sum_probs=79.7
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
..|.||+|||||+|+||+++|++|+.+|++|+++++.. ..+.+.+.|+...++++++++||+|++|+|.+.. ..+++
T Consensus 13 ~~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~s~~eaa~~ADVVvLaVPd~~~-~~V~~ 91 (330)
T PRK05479 13 SLIKGKKVAIIGYGSQGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVLTVAEAAKWADVIMILLPDEVQ-AEVYE 91 (330)
T ss_pred hhhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeCCHHHHHhcCCEEEEcCCHHHH-HHHHH
Confidence 46899999999999999999999999999999887653 4455667788777999999999999999996654 67776
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006212 303 DETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg 321 (656)
++.+..|++|++| -.+.|
T Consensus 92 ~~I~~~Lk~g~iL-~~a~G 109 (330)
T PRK05479 92 EEIEPNLKEGAAL-AFAHG 109 (330)
T ss_pred HHHHhcCCCCCEE-EECCC
Confidence 7788889999988 44555
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.3e-09 Score=115.63 Aligned_cols=115 Identities=19% Similarity=0.311 Sum_probs=93.3
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhcc---CCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|||||+|.||+.+|+++...|++|++||++. ..+.+.+.|+... ++++++++ +|+|++|+|..+.++.++ ...
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~-~~i 80 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVI-KDL 80 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHH-HHH
Confidence 69999999999999999999999999999875 3344556677654 78898876 699999999766777777 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee--ccCC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD--VFTE 348 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD--V~~~ 348 (656)
+..+++|.++||+++....+..++.+.+++..+. .+| |++.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~--~vdapV~G~ 123 (299)
T PRK12490 81 YPLLSPGDIVVDGGNSRYKDDLRRAEELAERGIH--YVDCGTSGG 123 (299)
T ss_pred hccCCCCCEEEECCCCCchhHHHHHHHHHHcCCe--EEeCCCCCC
Confidence 6778999999999999999999998888776553 356 4444
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-09 Score=111.60 Aligned_cols=108 Identities=19% Similarity=0.276 Sum_probs=89.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhcc---CCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALAT---ADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~---aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+|||||+|.||+.+|++|...|.+|.+||++. ..+.+.+.|+... +++++++. +|+|++++|..+.+..++ ...
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~-~~l 80 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATI-DEL 80 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHH-HHH
Confidence 79999999999999999999999999999986 3344566787665 78888876 699999999766667766 456
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+..+++|.++||++++.......+.+.+++..+.
T Consensus 81 ~~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~ 114 (301)
T PRK09599 81 APLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIH 114 (301)
T ss_pred HhhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCE
Confidence 6778999999999999988888888888876663
|
|
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.7e-09 Score=111.88 Aligned_cols=108 Identities=19% Similarity=0.247 Sum_probs=87.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH--HHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ETFA 307 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~--~~l~ 307 (656)
+|||||+|+||+.+|++|...|++|.+||+....+.+.+.|+... +..+++++||+|++|+|..+..+.++.. ..+.
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~~v~v~~~~~~~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~ 81 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGHQLHVTTIGPVADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTK 81 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEeCCHhHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhc
Confidence 699999999999999999999999999998754444556677544 7889999999999999977666665522 3466
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+++|.++||++....-....+.+.+.+..+
T Consensus 82 ~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~ 112 (292)
T PRK15059 82 ASLKGKTIVDMSSISPIETKRFARQVNELGG 112 (292)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 6899999999999888777778777776533
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.2e-09 Score=117.75 Aligned_cols=121 Identities=11% Similarity=0.107 Sum_probs=99.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH----cCCe----ecCHHHHhcc---CCEEEEccCCCcccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----VGVE----LVSFDQALAT---ADFISLHMPLNPTTS 298 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~----~g~~----~~~l~ell~~---aDvV~l~~Plt~~T~ 298 (656)
+|||||+|.||+.||++|...|++|.+||+.... +...+ .|.. ..+++++++. +|+|++|+|..+.+.
T Consensus 8 ~IG~IGLG~MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~ 87 (493)
T PLN02350 8 RIGLAGLAVMGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVD 87 (493)
T ss_pred CEEEEeeHHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHH
Confidence 6999999999999999999999999999997632 22222 1542 3478888876 999999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA 352 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~ 352 (656)
.++ ...+..|++|.++||++....-+...+.+.+++..+.....=|++.++.+
T Consensus 88 ~Vi-~gl~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA 140 (493)
T PLN02350 88 QTI-KALSEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGA 140 (493)
T ss_pred HHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHh
Confidence 887 56788899999999999999989999988898877766666688888643
|
|
| >cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.2e-08 Score=84.42 Aligned_cols=72 Identities=36% Similarity=0.649 Sum_probs=66.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
+++.++|+||.+++++++|+++|+||..+.+.+...++.+.+++.+|.+.+++++++|+++++|.+++++.|
T Consensus 2 l~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~l~~~~~v~~v~~~~~ 73 (73)
T cd04902 2 LVVRNTDRPGVIGKVGTILGEAGINIAGMQVGRDEPGGEALMVLSVDEPVPDEVLEELRALPGILSAKVVEL 73 (73)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCcChhheEeeccCCCCEEEEEEEeCCCCCHHHHHHHHcCCCccEEEEEeC
Confidence 577899999999999999999999999999987767789999999999888899999999999999999875
|
The C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with an extended C-terminal (xct) region from bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. Some 3PGDH enzymes have an additional domain formed by an extended C-terminal region. This additional domain introduces significant asymmetry to the homotetramer. Adjacent ACT (regulatory) domains interact, creating two serine-binding sites, however, this asymmetric arrangement results in the formation of two different and distinct domain interfaces between iden |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=98.83 E-value=1e-08 Score=109.56 Aligned_cols=94 Identities=27% Similarity=0.407 Sum_probs=73.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC-C-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~-~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|.||+|||||+|+||+++|+.|+.+|++|+++++. . ..+.+.+.|+...+..+++++||+|++|+|... ....+.++
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~s~~ea~~~ADiVvLaVpp~~-~~~~v~~e 79 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVGTVEEAIPQADLIMNLLPDEV-QHEVYEAE 79 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEECCHHHHHhcCCEEEEeCCcHh-HHHHHHHH
Confidence 57999999999999999999999999998875443 2 345555778877788999999999999999432 23344455
Q ss_pred HHhcCCCCcEEEEcCCCc
Q 006212 305 TFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ 322 (656)
....|+++. +|.++-|=
T Consensus 80 i~~~l~~g~-iVs~aaG~ 96 (314)
T TIGR00465 80 IQPLLKEGK-TLGFSHGF 96 (314)
T ss_pred HHhhCCCCc-EEEEeCCc
Confidence 667788886 67777664
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.79 E-value=6.6e-09 Score=99.68 Aligned_cols=93 Identities=33% Similarity=0.531 Sum_probs=69.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+||||+|||||..|.+.|.+||..|++|++-.+.. +.+.|++.|++..++.|++++||+|++.+|.. ....++.++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~~~~eAv~~aDvV~~L~PD~-~q~~vy~~~ 80 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVMSVAEAVKKADVVMLLLPDE-VQPEVYEEE 80 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECCEHHHHHHC-SEEEE-S-HH-HHHHHHHHH
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeeccHHHHHhhCCEEEEeCChH-HHHHHHHHH
Confidence 689999999999999999999999999998765543 56889999999999999999999999999933 234455677
Q ss_pred HHhcCCCCcEEEEcCCC
Q 006212 305 TFAKMKKGVRIVNVARG 321 (656)
Q Consensus 305 ~l~~mK~gailINvaRg 321 (656)
....||+|..|+ .+.|
T Consensus 81 I~p~l~~G~~L~-fahG 96 (165)
T PF07991_consen 81 IAPNLKPGATLV-FAHG 96 (165)
T ss_dssp HHHHS-TT-EEE-ESSS
T ss_pred HHhhCCCCCEEE-eCCc
Confidence 777899998764 4444
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.8e-08 Score=105.46 Aligned_cols=118 Identities=13% Similarity=0.200 Sum_probs=87.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHH---hccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~el---l~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
++|||||+|.||..+|+++...|++|.+||++. ..+.+.+.|... .+++++ +.++|+|++|+|.. .++.++ ++
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~-~~ 78 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVL-EE 78 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHH-HH
Confidence 379999999999999999999999999999986 334445555533 355554 45789999999966 667776 45
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
....+++|.++||++.+...+...+.+.+++..+.....-|++..
T Consensus 79 l~~~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~ 123 (298)
T TIGR00872 79 LAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGV 123 (298)
T ss_pred HHhhCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCH
Confidence 667789999999999887777777777777655532322344433
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=98.77 E-value=8.5e-09 Score=113.10 Aligned_cols=103 Identities=18% Similarity=0.264 Sum_probs=82.3
Q ss_pred ccccccc-cc-cccCCCEEEEEecChhHHHHHHHHhcCCCEEEE------ECCCC-ChhHHHHcCCeecCHHHHhccCCE
Q 006212 216 KWLRSKY-VG-VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA------HDPYA-PADKARAVGVELVSFDQALATADF 286 (656)
Q Consensus 216 ~W~~~~~-~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~------~d~~~-~~~~a~~~g~~~~~l~ell~~aDv 286 (656)
-|.+..| .+ ..|+||||+|||+|.+|+.-|..++..|++|++ .|... +.+.|.+.|+.+.++++++++||+
T Consensus 21 ~~~r~ef~~~~~~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v~~~~Ea~~~ADv 100 (487)
T PRK05225 21 FMDRDEFADGASYLKGKKIVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADL 100 (487)
T ss_pred ecchhhccchhHHhCCCEEEEEccCHHHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCccCCHHHHHHhCCE
Confidence 4887766 23 469999999999999999888888888888873 33322 556677789888899999999999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
|++.+|.+ + .+.+.++.+..||+|+.|. .+.|
T Consensus 101 VviLlPDt-~-q~~v~~~i~p~LK~Ga~L~-fsHG 132 (487)
T PRK05225 101 VINLTPDK-Q-HSDVVRAVQPLMKQGAALG-YSHG 132 (487)
T ss_pred EEEcCChH-H-HHHHHHHHHhhCCCCCEEE-ecCC
Confidence 99999988 3 7777799999999998874 3443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-07 Score=99.00 Aligned_cols=174 Identities=19% Similarity=0.249 Sum_probs=104.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-------------------------cCCee-cCHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-------------------------VGVEL-VSFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-------------------------~g~~~-~~l~ell~ 282 (656)
++|+|||.|.||.++|..+...|.+|++||++.. .+.+.+ .++.. .++++.++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~ 83 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVK 83 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhc
Confidence 5899999999999999999988999999998752 222211 12222 37888899
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
.||+|+.|+|...+.+.-+-++....++++++|+..+++-. ...+.+.++. .++.| ++. .+|.+.++
T Consensus 84 ~aDlVieavpe~~~~k~~~~~~l~~~~~~~~ii~sntSt~~--~~~~~~~~~~~~r~vg--~Hf--------~~p~~~~~ 151 (287)
T PRK08293 84 DADLVIEAVPEDPEIKGDFYEELAKVAPEKTIFATNSSTLL--PSQFAEATGRPEKFLA--LHF--------ANEIWKNN 151 (287)
T ss_pred CCCEEEEeccCCHHHHHHHHHHHHhhCCCCCEEEECcccCC--HHHHHhhcCCcccEEE--EcC--------CCCCCcCC
Confidence 99999999995544444333445556789998855444432 3445554443 23433 332 13455678
Q ss_pred cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhc-cchHHHHHHH
Q 006212 362 NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSEL-APYVVLAKKL 424 (656)
Q Consensus 362 nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l-~p~~~laerl 424 (656)
.+.++|+-..+ .++.+.+.++++.-....++-.+-.+-.+.+.+ .+++..|-+|
T Consensus 152 lvevv~~~~t~---------~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~nRi~~~~~~ea~~l 206 (287)
T PRK08293 152 TAEIMGHPGTD---------PEVFDTVVAFAKAIGMVPIVLKKEQPGYILNSLLVPFLSAALAL 206 (287)
T ss_pred eEEEeCCCCCC---------HHHHHHHHHHHHHcCCeEEEecCCCCCHhHHHHHHHHHHHHHHH
Confidence 88899986554 334444555554433333332223334444443 3555444443
|
|
| >KOG0409 consensus Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=2.3e-08 Score=103.89 Aligned_cols=112 Identities=13% Similarity=0.202 Sum_probs=91.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN-- 302 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~-- 302 (656)
...++|||||+|.||..|+..|...|++|++||++. ..+.+.+.|.+.. ++.|+.+.||+|+.++|.....+.++.
T Consensus 33 ~s~~~iGFIGLG~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~ 112 (327)
T KOG0409|consen 33 PSKTRIGFIGLGNMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGK 112 (327)
T ss_pred cccceeeEEeeccchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCC
Confidence 357899999999999999999999999999999987 4456777888765 899999999999999998877777663
Q ss_pred HHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhcCCe
Q 006212 303 DETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 303 ~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~g~i 338 (656)
...|...++|... ||.+.-...-...+.++++....
T Consensus 113 ~Gvl~g~~~g~~~~vDmSTidp~~s~ei~~~i~~~~~ 149 (327)
T KOG0409|consen 113 SGVLSGIRPGKKATVDMSTIDPDTSLEIAKAISNKGG 149 (327)
T ss_pred CcceeeccCCCceEEeccccCHHHHHHHHHHHHhCCC
Confidence 3456667777666 89988777666777777776533
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.2e-07 Score=100.19 Aligned_cols=106 Identities=25% Similarity=0.250 Sum_probs=76.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hH-----------HHHcC-------------CeecCHHHHhccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-----------ARAVG-------------VELVSFDQALATA 284 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~-----------a~~~g-------------~~~~~l~ell~~a 284 (656)
++|||||+|.||..+|+.+...|++|++||++... +. ..+.| ....+..+.+++|
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a 84 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDA 84 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCC
Confidence 68999999999999999999999999999987522 21 11112 1233333568999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCe
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVV 338 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i 338 (656)
|+|+.|+|..++.+..+-.+....++++++|+ |++.-.+- .+.+.+.. .++
T Consensus 85 D~Vieav~e~~~~k~~v~~~l~~~~~~~~il~s~tS~i~~~---~l~~~~~~~~r~ 137 (295)
T PLN02545 85 DFIIEAIVESEDLKKKLFSELDRICKPSAILASNTSSISIT---RLASATQRPQQV 137 (295)
T ss_pred CEEEEcCccCHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCCcce
Confidence 99999999888887776666666789999886 77766443 34444443 344
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.3e-07 Score=101.33 Aligned_cols=174 Identities=22% Similarity=0.228 Sum_probs=107.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-----------HcC---------Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-----------AVG---------VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-----------~~g---------~~~-~~l~ell~~aDvV 287 (656)
++|||||.|.||..+|..+...|++|.+||+... .+.+. +.| +.. .++++.+++||+|
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlV 87 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFI 87 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEE
Confidence 6899999999999999999999999999998752 11111 111 123 3788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcEEEc
Q 006212 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENVTVT 366 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nvilT 366 (656)
+-|+|...+.+..+-++.-+.++++++| .++..++ ...++.+.++. .++ .+++.| .|+ .--||.+ ++-+
T Consensus 88 iEavpE~l~vK~~lf~~l~~~~~~~aIl-aSnTS~l-~~s~la~~~~~p~R~--~g~Hff--nP~-~~~pLVE---Vv~g 157 (321)
T PRK07066 88 QESAPEREALKLELHERISRAAKPDAII-ASSTSGL-LPTDFYARATHPERC--VVGHPF--NPV-YLLPLVE---VLGG 157 (321)
T ss_pred EECCcCCHHHHHHHHHHHHHhCCCCeEE-EECCCcc-CHHHHHHhcCCcccE--EEEecC--Ccc-ccCceEE---EeCC
Confidence 9999999888887777777889999854 4444443 45566656654 455 444544 332 2345664 4545
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc-chHHHHHHH
Q 006212 367 PHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA-PYVVLAKKL 424 (656)
Q Consensus 367 PH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~-p~~~laerl 424 (656)
|+. + .++.+.+.+|++.-.-..++-..-.|--+.+.+. +++..|-+|
T Consensus 158 ~~T--~---------~e~~~~~~~f~~~lGk~pV~v~kd~pGFi~NRl~~a~~~EA~~l 205 (321)
T PRK07066 158 ERT--A---------PEAVDAAMGIYRALGMRPLHVRKEVPGFIADRLLEALWREALHL 205 (321)
T ss_pred CCC--C---------HHHHHHHHHHHHHcCCEeEecCCCCccHHHHHHHHHHHHHHHHH
Confidence 543 1 3344445555543332232221233444555543 444444433
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.75 E-value=2e-08 Score=105.86 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=83.5
Q ss_pred EEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHHHhcC
Q 006212 234 VMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DETFAKM 309 (656)
Q Consensus 234 IIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~l~~m 309 (656)
|||+|.||..+|++|...|++|.+||++. ..+...+.|+... ++.+++++||+|++|+|....++.++. ...+..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~ 80 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKV 80 (288)
T ss_pred CCcccHhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcC
Confidence 68999999999999999999999999986 3445556677554 899999999999999997666666652 3456678
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++|.++||++....-....+.+.+++..+
T Consensus 81 ~~g~~vid~st~~p~~~~~~~~~~~~~g~ 109 (288)
T TIGR01692 81 AKGSLLIDCSTIDPDSARKLAELAAAHGA 109 (288)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 99999999997776666777777765433
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.7e-08 Score=124.10 Aligned_cols=110 Identities=15% Similarity=0.154 Sum_probs=93.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccc--cH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF--ND 303 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li--~~ 303 (656)
..++|||||+|.||..||++|...|++|.+||++. ..+.+.+.|+... ++.+++++||+|++|+|..+.++.++ ..
T Consensus 3 ~~~~IGfIGLG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~ 82 (1378)
T PLN02858 3 SAGVVGFVGLDSLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDE 82 (1378)
T ss_pred CCCeEEEEchhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchh
Confidence 35789999999999999999999999999999986 3345566787654 89999999999999999888888776 34
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~ 337 (656)
..+..+++|.++||++....-....+.+.+++..
T Consensus 83 g~~~~l~~g~iivd~STi~p~~~~~la~~l~~~g 116 (1378)
T PLN02858 83 GAAKGLQKGAVILIRSTILPLQLQKLEKKLTERK 116 (1378)
T ss_pred hHHhcCCCcCEEEECCCCCHHHHHHHHHHHHhcC
Confidence 5677899999999999988888888888887654
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.8e-08 Score=122.73 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=90.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccc--cHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIF--NDE 304 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li--~~~ 304 (656)
.++|||||+|.||..||++|...|++|.+||++.. .+...+.|... .++.+++++||+|++|+|..++++.++ ...
T Consensus 324 ~~~IGfIGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g 403 (1378)
T PLN02858 324 VKRIGFIGLGAMGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLG 403 (1378)
T ss_pred CCeEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhh
Confidence 47899999999999999999999999999998763 34445566644 489999999999999999888888776 345
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.+..|++|.++||++....-..+.+.+.+.+
T Consensus 404 ~~~~l~~g~ivVd~STvsP~~~~~la~~l~~ 434 (1378)
T PLN02858 404 AVSALPAGASIVLSSTVSPGFVIQLERRLEN 434 (1378)
T ss_pred HHhcCCCCCEEEECCCCCHHHHHHHHHHHHh
Confidence 6788999999999999888777788777776
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-08 Score=103.51 Aligned_cols=101 Identities=32% Similarity=0.479 Sum_probs=85.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.-+.||++.|.|||.+|+.+|.++++.|++|++..-.+ ..-+|.-.|+++..+++....+|+++.++- ++++|..
T Consensus 205 ~liaGK~vVV~GYG~vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~~m~~Aa~~gDifiT~TG----nkdVi~~ 280 (420)
T COG0499 205 VLLAGKNVVVAGYGWVGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVMTMEEAAKTGDIFVTATG----NKDVIRK 280 (420)
T ss_pred eeecCceEEEecccccchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEEEhHHhhhcCCEEEEccC----CcCccCH
Confidence 35899999999999999999999999999999975443 334567789999999999999999999765 6788999
Q ss_pred HHHhcCCCCcEEEEcCCCch-hcHHHH
Q 006212 304 ETFAKMKKGVRIVNVARGGV-IDEEAL 329 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~i-vde~aL 329 (656)
+.|..||+|+++-|.|.-.+ +|.+.|
T Consensus 281 eh~~~MkDgaIl~N~GHFd~EI~~~~L 307 (420)
T COG0499 281 EHFEKMKDGAILANAGHFDVEIDVAGL 307 (420)
T ss_pred HHHHhccCCeEEecccccceeccHHHH
Confidence 99999999999999986544 345554
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=3.6e-08 Score=110.64 Aligned_cols=120 Identities=10% Similarity=0.175 Sum_probs=95.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHc----CCe---ecCHHHHhc---cCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAV----GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~----g~~---~~~l~ell~---~aDvV~l~~Plt~~T~ 298 (656)
.+|||||+|.||+.+|++|...|++|.+||++... +...+. |.. ..+++++++ ++|+|++++|....++
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~ 81 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVD 81 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHH
Confidence 37999999999999999999999999999998632 222221 432 347888886 5899999999888888
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.++ .+.+..|++|.+|||++.+..-+...+.+.+.+..+.....=|++.++
T Consensus 82 ~vi-~~l~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~ 132 (470)
T PTZ00142 82 ETI-DNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEE 132 (470)
T ss_pred HHH-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHH
Confidence 887 456778999999999999998898888888888777555555777664
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.8e-07 Score=97.20 Aligned_cols=128 Identities=20% Similarity=0.201 Sum_probs=85.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-------HcC-----------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-------AVG-----------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-------~~g-----------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+. ..+ +.. .++++.+++
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~ 81 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVAD 81 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcC
Confidence 5799999999999999999999999999998752 22211 011 222 368889999
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+.|+|...+.+..+-.+..+.++++++| +|++.-.+ ..+.+.++. .-.-.+++.+ .|.. ..+ -
T Consensus 82 aD~Vi~avpe~~~~k~~~~~~l~~~~~~~~il~~~tSt~~~---~~l~~~~~~-~~r~~g~h~~--~Pv~-~~~-----L 149 (288)
T PRK09260 82 ADLVIEAVPEKLELKKAVFETADAHAPAECYIATNTSTMSP---TEIASFTKR-PERVIAMHFF--NPVH-KMK-----L 149 (288)
T ss_pred CCEEEEeccCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCC-cccEEEEecC--CCcc-cCc-----e
Confidence 99999999976655544434455668999877 78877554 344444433 1222556666 3542 233 4
Q ss_pred EEEcCCC
Q 006212 363 VTVTPHL 369 (656)
Q Consensus 363 vilTPH~ 369 (656)
+.+.|+-
T Consensus 150 ve~v~g~ 156 (288)
T PRK09260 150 VELIRGL 156 (288)
T ss_pred EEEeCCC
Confidence 5577764
|
|
| >PF03315 SDH_beta: Serine dehydratase beta chain; InterPro: IPR005131 L-serine dehydratase is found as a heterodimer of alpha and beta chain or as a fusion of the two chains in a single protein | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.4e-08 Score=97.90 Aligned_cols=116 Identities=8% Similarity=-0.011 Sum_probs=75.6
Q ss_pred HHHHhHHHHHhhcCC---CCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhcccccc------------chHhHh
Q 006212 421 AKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLV------------NADFTA 485 (656)
Q Consensus 421 aerlG~l~~qL~~g~---~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v------------NA~~iA 485 (656)
.-|+|+.++|++.+. ..+.+|++.++||++ .++++|++|.|++.|||+. ..+++++. |.+.++
T Consensus 20 pmra~~~f~~~l~~~~~l~~~~~v~v~l~GSla-~Tg~GHgTD~Av~~GLlG~-~p~~~~~~~~~~~~~~~~~~~~L~l~ 97 (157)
T PF03315_consen 20 PMRAARRFRQLLGEQGLLPQVARVRVDLYGSLA-ATGKGHGTDRAVLAGLLGE-DPEDVDPDSIPERLERIREENRLRLA 97 (157)
T ss_dssp HHHHHHHHHHHHHHTT-TTT--EEEEEEEHHHH-HT-TTSSHHHHHHHHCTT---TTTS-GGGHHHHHHHHHHHTEEEET
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEEeechhH-HhCCCcccchhheeccccc-CCcccchhhhHHHHHHhhcCCEEEEC
Confidence 457788888887652 158899999999999 9999999999999999955 44458888 444444
Q ss_pred hccCceEE------EEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcc
Q 006212 486 KQKGLRIS------EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGS 549 (656)
Q Consensus 486 ke~GI~v~------~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdG 549 (656)
.++.|.+. |..... +..|||++++++.+ ..++..++..+.|+| |.+++.++||
T Consensus 98 ~~~~i~f~~~~dI~f~~~~~---~~~HPNtm~~~a~d--------~~g~~~~~~t~ySIGGGfI~~~~~~~ 157 (157)
T PF03315_consen 98 GEREIPFDPERDIIFHPEEF---LPFHPNTMRFEAYD--------ADGGELLEETYYSIGGGFIVIEEENG 157 (157)
T ss_dssp TTEEEE--HHHHEEEETT------SS-SSEEEEEEE---------TTS-EEEEEEEEEETTTEEEETTTT-
T ss_pred CCcccccccCCCeEEEeccC---CCCCCCEEEEEEEe--------CCCCEEEEEEEEEeCCeEEEEeeecC
Confidence 44444333 222221 13799999999973 134457899999998 7887766554
|
This enzyme catalyses the deamination of serine to form pyruvate and is part of the gluconeogenesis pathway.; GO: 0003941 L-serine ammonia-lyase activity, 0051539 4 iron, 4 sulfur cluster binding, 0006094 gluconeogenesis; PDB: 2IQQ_A 2IAF_A. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=98.63 E-value=9.5e-08 Score=107.29 Aligned_cols=118 Identities=18% Similarity=0.212 Sum_probs=90.6
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---C--Cee-cCHHHHh---ccCCEEEEccCCCccccccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---G--VEL-VSFDQAL---ATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---g--~~~-~~l~ell---~~aDvV~l~~Plt~~T~~li 301 (656)
|||||+|.||+.+|++|...|++|.+||++.. .+.+.+. | +.. .++++++ +++|+|++++|..+.+..++
T Consensus 2 IG~IGLG~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi 81 (467)
T TIGR00873 2 IGVIGLAVMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVI 81 (467)
T ss_pred EEEEeeHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHH
Confidence 89999999999999999999999999999763 3333333 2 322 3677766 46999999999767777777
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.+.+..+++|.+|||++....-+...+.+.+++..+.....-|++.++
T Consensus 82 -~~l~~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~ 129 (467)
T TIGR00873 82 -NQLLPLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEE 129 (467)
T ss_pred -HHHHhhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHH
Confidence 456677899999999999888787777777877666545445666654
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-07 Score=91.24 Aligned_cols=108 Identities=27% Similarity=0.348 Sum_probs=79.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCeecCHHHHhc-cCCEEEEccCCCcccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
+.++.||+++|+|+|+||+.+|++|..+|++|+++|++.. .+.. ...|...++.++++. +||+++.|.. .++
T Consensus 23 ~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~~~l~~~~~Dv~vp~A~-----~~~ 97 (200)
T cd01075 23 TDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAPEEIYSVDADVFAPCAL-----GGV 97 (200)
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcchhhccccCCEEEeccc-----ccc
Confidence 5678999999999999999999999999999999998753 2222 233666667777775 7999987765 357
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++++.+..|+. -+|+.-+-+.+-|.+ -.+.|++..|
T Consensus 98 I~~~~~~~l~~-~~v~~~AN~~~~~~~-~~~~L~~~Gi 133 (200)
T cd01075 98 INDDTIPQLKA-KAIAGAANNQLADPR-HGQMLHERGI 133 (200)
T ss_pred cCHHHHHHcCC-CEEEECCcCccCCHh-HHHHHHHCCC
Confidence 88888888874 477777777665422 2334555444
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.2e-07 Score=82.93 Aligned_cols=88 Identities=25% Similarity=0.423 Sum_probs=64.2
Q ss_pred EEEEEecChhHHHHHHHHhcCC---CEEE-EECCCCC--hhHHHHcCCeec--CHHHHhccCCEEEEccCCCcccccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG---MNVI-AHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G---~~Vi-~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
||||||+|+||..+++.+...| .+|+ +++++.. .+.+.+.++... +..+++++||+|++|+|.. ....+.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~p~-~~~~v~- 78 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVKPQ-QLPEVL- 78 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S-GG-GHHHHH-
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEECHH-HHHHHH-
Confidence 6999999999999999999999 8999 5587752 234466676543 6999999999999999922 233333
Q ss_pred HHHHhcCCCCcEEEEcCCC
Q 006212 303 DETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg 321 (656)
.+. ....++.++|++.-|
T Consensus 79 ~~i-~~~~~~~~vis~~ag 96 (96)
T PF03807_consen 79 SEI-PHLLKGKLVISIAAG 96 (96)
T ss_dssp HHH-HHHHTTSEEEEESTT
T ss_pred HHH-hhccCCCEEEEeCCC
Confidence 222 556788999998643
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.3e-07 Score=91.87 Aligned_cols=101 Identities=22% Similarity=0.294 Sum_probs=75.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC----EEEEE-CCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAH-DPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~----~Vi~~-d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.+|||||+|+||+++|+.|...|+ +|++| |++. ..+.+.+.|+... +..+++++||+|++|+| .+....++.
T Consensus 1 ~kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~ 79 (266)
T PLN02688 1 FRVGFIGAGKMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLT 79 (266)
T ss_pred CeEEEECCcHHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHH
Confidence 379999999999999999998887 89999 8765 3344556787654 78888999999999997 445555553
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+....++++.++|++..| +..+.+.+.+.
T Consensus 80 -~l~~~~~~~~~iIs~~~g--~~~~~l~~~~~ 108 (266)
T PLN02688 80 -ELRPLLSKDKLLVSVAAG--ITLADLQEWAG 108 (266)
T ss_pred -HHHhhcCCCCEEEEecCC--CcHHHHHHHcC
Confidence 344557889988888655 35555554443
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.9e-07 Score=102.14 Aligned_cols=106 Identities=21% Similarity=0.201 Sum_probs=72.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee---cCHHHH---------------hccCCEEEEcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL---VSFDQA---------------LATADFISLHM 291 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~l~~ 291 (656)
++|+|||+|.||.++|.+|...|++|++||++...-.....|... ..++++ +++||+|++|+
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~v 83 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAV 83 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEc
Confidence 689999999999999999999999999999876432233333211 134444 34799999999
Q ss_pred CCC------ccccccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 292 PLN------PTTSKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 292 Plt------~~T~~li--~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
|.. ++...+. -......+++|+++|+.+...+-..+.+...+.+
T Consensus 84 ptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~ 135 (415)
T PRK11064 84 PTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVILESTSPVGATEQMAEWLAE 135 (415)
T ss_pred CCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 943 1222222 1345566899999999998665555555544443
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=3e-08 Score=116.34 Aligned_cols=184 Identities=15% Similarity=0.103 Sum_probs=115.3
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc--C-CeEE---EEeeccCCCCCCCCCccccC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS--G-VVAQ---AALDVFTEEPPAKDSKLVQH 360 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~--g-~i~g---A~lDV~~~EP~~~~~~L~~~ 360 (656)
|++|+|. ..+..++. +....++++++|+|+++-+---.++..+.|.. + +|+| ||.++.+.+ .++..||++
T Consensus 1 vila~Pv-~~~~~~~~-~~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~--~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAPV-AQTGPLLA-RIAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVD--AALADLYVG 76 (673)
T ss_pred CEEEcCH-HHHHHHHH-HHhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhh--hhChhHhCC
Confidence 5799993 33555553 34456899999999997554333343344432 2 4555 888888887 678899999
Q ss_pred CcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCC-----------CCChhhhhhccchHHHHHHHhHHHH
Q 006212 361 ENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAP-----------MVPSEVLSELAPYVVLAKKLGRLAV 429 (656)
Q Consensus 361 ~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p-----------~~~~~~~~~l~p~~~laerlG~l~~ 429 (656)
.+||+||.-... .++. +.+.++++.-..+...-.| |+||-+...+...+.. ..-..++.
T Consensus 77 ~~~il~p~~~~~-~~~~--------~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~~a~~l~~~~~~-~~~~~~~~ 146 (673)
T PRK11861 77 RNVVLCALPENA-PDAL--------ARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHVLSFALVEQILG-ESDAELKF 146 (673)
T ss_pred CeEEEecCCCCC-HHHH--------HHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHHHHHHHHHHHhh-ccChhHHH
Confidence 999999965322 3322 2233333332332222111 4444444333322211 11133445
Q ss_pred HhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhc
Q 006212 430 QLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQ 487 (656)
Q Consensus 430 qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke 487 (656)
+|++| +||++|+++.+++. +|.++...|+..+...|+.+..+...+.++..--++
T Consensus 147 ~~a~~--gfrd~tRia~~~p~-lw~di~~~N~~~i~~~l~~~~~~l~~~~~~l~~~d~ 201 (673)
T PRK11861 147 SYAAG--GFRDFTRIAASSPE-MWRDVCLANRAALLDELDAYTAVLARLRAAIDAGDG 201 (673)
T ss_pred Hhccc--chhcccccccCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 78888 99999999999998 999999999998877888777765555555543333
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-06 Score=91.69 Aligned_cols=129 Identities=19% Similarity=0.276 Sum_probs=83.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|.+||++.. .+.+.+ .| +... +++ .+++
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 83 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLAD 83 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcC
Confidence 6899999999999999999999999999998752 222111 12 2222 554 5789
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
||+|+.|+|...+.+..+-.+....++++++|+ |++.-.+ .++.+.+.. .++ .+++.+. |.+ -.++.
T Consensus 84 aD~Vieavpe~~~~k~~~~~~l~~~~~~~~ii~s~ts~~~~---s~la~~~~~~~r~--~g~h~~~--p~~-~~~~v--- 152 (292)
T PRK07530 84 CDLVIEAATEDETVKRKIFAQLCPVLKPEAILATNTSSISI---TRLASATDRPERF--IGIHFMN--PVP-VMKLV--- 152 (292)
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEEcCCCCCH---HHHHhhcCCcccE--EEeeccC--Ccc-cCceE---
Confidence 999999999766555444345556689999887 6665443 356555532 344 4455554 332 22443
Q ss_pred cEEEcCCCCCC
Q 006212 362 NVTVTPHLGAS 372 (656)
Q Consensus 362 nvilTPH~g~~ 372 (656)
-+.|+.+++
T Consensus 153 --ei~~g~~t~ 161 (292)
T PRK07530 153 --ELIRGIATD 161 (292)
T ss_pred --EEeCCCCCC
Confidence 356665443
|
|
| >cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.9e-07 Score=76.57 Aligned_cols=68 Identities=29% Similarity=0.544 Sum_probs=60.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
+++.+.|+||++++++++|+++++||.+|.... .++.+++.++++....++++++|+++++|.+++++
T Consensus 2 ~~~~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~--~~~~a~~~~~~~~~~l~~li~~l~~~~~V~~v~~~ 69 (69)
T cd04901 2 ILHIHKNVPGVLGQINTILAEHNINIAAQYLQT--RGEIGYVVIDIDSEVSEELLEALRAIPGTIRVRLL 69 (69)
T ss_pred EEEEecCCCcHHHHHHHHHHHcCCCHHHHhccC--CCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 567899999999999999999999999997643 34889999999999888999999999999999874
|
The C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In Escherichia coli, the SerA 3PGDH is feedback-controlled by the end product L-serine in an allosteric manner. In the homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active site is postulated to involve the tethering of the regulatory domains together to create a rigid quaternary structure with a solvent- |
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.4e-07 Score=98.69 Aligned_cols=83 Identities=24% Similarity=0.267 Sum_probs=67.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+++|+|||+|.||..+|++|...|++|.+||++.. .++++++++||+|++++|. +..+.+++.-...
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~~-----------~~~~~~~~~advvi~~vp~-~~~~~v~~~l~~~ 70 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVRVWSRRSG-----------LSLAAVLADADVIVSAVSM-KGVRPVAEQVQAL 70 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEEEEeCCCC-----------CCHHHHHhcCCEEEEECCh-HHHHHHHHHHHHh
Confidence 357899999999999999999999999999998742 3578889999999999996 4566666332122
Q ss_pred cCCCCcEEEEcCCCc
Q 006212 308 KMKKGVRIVNVARGG 322 (656)
Q Consensus 308 ~mK~gailINvaRg~ 322 (656)
.+++++++|++++|-
T Consensus 71 ~~~~~~ivi~~s~gi 85 (308)
T PRK14619 71 NLPPETIIVTATKGL 85 (308)
T ss_pred cCCCCcEEEEeCCcc
Confidence 478899999998743
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.3e-06 Score=90.38 Aligned_cols=130 Identities=19% Similarity=0.246 Sum_probs=85.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------ee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVGV-------------EL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 283 (656)
++|||||.|.||..+|..+...|++|+.||+... .+. +.+.|. .. .++ +.+++
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~ 84 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFAD 84 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCC
Confidence 4899999999999999999999999999998752 222 222232 12 256 45899
Q ss_pred CCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcCCCchhcHHHHHHhHh-cCCeEEEEeeccCCCCCCCCCccccCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVARGGVIDEEALVRALD-SGVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~m-K~gailINvaRg~ivde~aL~~aL~-~g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
||+|+-|+|.+.+.+..+-...-+.+ +++++|.+.+++-.+.. +..+++ ..++ .+++.|.+-| -.+|.
T Consensus 85 ~d~ViEav~E~~~~K~~l~~~l~~~~~~~~~il~snTS~~~~~~--la~~~~~~~r~--~g~hf~~P~~---~~~lv--- 154 (286)
T PRK07819 85 RQLVIEAVVEDEAVKTEIFAELDKVVTDPDAVLASNTSSIPIMK--LAAATKRPGRV--LGLHFFNPVP---VLPLV--- 154 (286)
T ss_pred CCEEEEecccCHHHHHHHHHHHHHhhCCCCcEEEECCCCCCHHH--HHhhcCCCccE--EEEecCCCcc---cCceE---
Confidence 99999999988887776544333434 88999988876654433 333333 2344 4556555322 23444
Q ss_pred cEEEcCCCCCC
Q 006212 362 NVTVTPHLGAS 372 (656)
Q Consensus 362 nvilTPH~g~~ 372 (656)
=++|+.+++
T Consensus 155 --Elv~~~~T~ 163 (286)
T PRK07819 155 --ELVPTLVTS 163 (286)
T ss_pred --EEeCCCCCC
Confidence 456655444
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.6e-07 Score=95.79 Aligned_cols=80 Identities=18% Similarity=0.189 Sum_probs=67.9
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+|+|||.| .||+.+|.+|...|+.|.+|++... ++.+++++||+|+++++..+ ++
T Consensus 153 ~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVtv~~~~t~------------~l~e~~~~ADIVIsavg~~~----~v 216 (301)
T PRK14194 153 TCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVTVVHSRST------------DAKALCRQADIVVAAVGRPR----LI 216 (301)
T ss_pred hCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----cc
Confidence 4789999999999996 9999999999999999999986532 68899999999999999543 45
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
.... +|+|+++||+|-.
T Consensus 217 ~~~~---ik~GaiVIDvgin 233 (301)
T PRK14194 217 DADW---LKPGAVVIDVGIN 233 (301)
T ss_pred cHhh---ccCCcEEEEeccc
Confidence 4443 7999999999843
|
|
| >KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.45 E-value=7e-07 Score=92.64 Aligned_cols=94 Identities=30% Similarity=0.477 Sum_probs=81.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--CCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.-+.||.+.|.|||.+|+..|+.||+||.+|++. ||- ....|...|+++++++|+++++|+++.++ ..+.+|.
T Consensus 210 vM~aGKv~Vv~GYGdVGKgCaqaLkg~g~~VivTEiDPI-~ALQAaMeG~~V~tm~ea~~e~difVTtT----Gc~dii~ 284 (434)
T KOG1370|consen 210 VMIAGKVAVVCGYGDVGKGCAQALKGFGARVIVTEIDPI-CALQAAMEGYEVTTLEEAIREVDIFVTTT----GCKDIIT 284 (434)
T ss_pred heecccEEEEeccCccchhHHHHHhhcCcEEEEeccCch-HHHHHHhhccEeeeHHHhhhcCCEEEEcc----CCcchhh
Confidence 3478999999999999999999999999999996 554 33456778999999999999999999854 4678899
Q ss_pred HHHHhcCCCCcEEEEcCCCch
Q 006212 303 DETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i 323 (656)
.+.|.+||.++++-|++.-.+
T Consensus 285 ~~H~~~mk~d~IvCN~Ghfd~ 305 (434)
T KOG1370|consen 285 GEHFDQMKNDAIVCNIGHFDT 305 (434)
T ss_pred HHHHHhCcCCcEEeccccccc
Confidence 999999999999999986543
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=1e-06 Score=98.06 Aligned_cols=135 Identities=16% Similarity=0.155 Sum_probs=86.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCC-----------------eecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-----------------ELVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~-----------------~~~~l~ell~~aDvV~l~~P 292 (656)
.+|||||+|.||..+|..+.. |++|++||.+...-.....|. ...+..+.+++||++++|+|
T Consensus 7 mkI~vIGlGyvGlpmA~~la~-~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vp 85 (425)
T PRK15182 7 VKIAIIGLGYVGLPLAVEFGK-SRQVVGFDVNKKRILELKNGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVP 85 (425)
T ss_pred CeEEEECcCcchHHHHHHHhc-CCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcC
Confidence 689999999999999999877 699999998764322222333 22333457899999999999
Q ss_pred CCc------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHH-HhHhc--CCeEEE-EeeccCCCCCCC---CCcc
Q 006212 293 LNP------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALV-RALDS--GVVAQA-ALDVFTEEPPAK---DSKL 357 (656)
Q Consensus 293 lt~------~T~~li~--~~~l~~mK~gailINvaRg~ivde~aL~-~aL~~--g~i~gA-~lDV~~~EP~~~---~~~L 357 (656)
... +...++. +.....+++|.++|+.+.-.+-..+.++ ..+++ |.-.+- -.=+|-+||... ...+
T Consensus 86 tp~~~~~~~dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~ 165 (425)
T PRK15182 86 TPINTYKQPDLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRL 165 (425)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccc
Confidence 442 2234432 3455678999999999987776655443 33333 321111 111355677643 2356
Q ss_pred ccCCcEEE
Q 006212 358 VQHENVTV 365 (656)
Q Consensus 358 ~~~~nvil 365 (656)
...+.++.
T Consensus 166 ~~~~riv~ 173 (425)
T PRK15182 166 TNIKKITS 173 (425)
T ss_pred cCCCeEEE
Confidence 66677743
|
|
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.3e-05 Score=90.60 Aligned_cols=177 Identities=20% Similarity=0.264 Sum_probs=112.7
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCC--h--------hhHHHHHHHHH
Q 006212 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--T--------VAAAEHGIALL 198 (656)
Q Consensus 130 ~~d~li-v~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n--~--------~~vAE~~lal~ 198 (656)
++|+|+ ++ +.+.+-++.+.++--+|+...-.-|.=-++++.++||.+..--... + .+.++.+
T Consensus 64 ~adiIlkV~---~P~~~e~~~l~~g~tli~~l~p~~n~~ll~~l~~k~it~ia~E~vprisraq~~d~lssma~iA---- 136 (511)
T TIGR00561 64 QSDIILKVN---APSDAEIAELPAGKALVSFIWPAQNPELMEKLAAKNITVLAMDAVPRISRAQKLDALSSMANIA---- 136 (511)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEcCccCCHHHHHHHHHcCCEEEEeecccccccCCccCcchhhHHHH----
Confidence 578776 32 2345556666666667766555445444788899999887543211 1 1122222
Q ss_pred HHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec
Q 006212 199 ASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV 275 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~ 275 (656)
-.|-+..+... -|++.... ..| .+.+.++.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|...+
T Consensus 137 --Gy~Avi~Aa~~--lgr~~~g~~taag-~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v 211 (511)
T TIGR00561 137 --GYRAIIEAAHE--FGRFFTGQITAAG-KVPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFL 211 (511)
T ss_pred --HHHHHHHHHHH--hhhhcCCceecCC-CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEE
Confidence 11111111111 11111100 012 3457899999999999999999999999999999876 4556677776542
Q ss_pred --C--------------------------HHHHhccCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 276 --S--------------------------FDQALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 276 --~--------------------------l~ell~~aDvV~l~~--Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+ +.+.++++|+|+.++ |..+ .-.++.++.++.||+|++|||++
T Consensus 212 ~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~-aP~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 212 ELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKP-APKLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred eccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCC-CCeeehHHHHhhCCCCCEEEEee
Confidence 1 345578899998887 3221 23578899999999999999997
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.1e-06 Score=90.21 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=68.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcCC-------------ee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVGV-------------EL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g~-------------~~-~~l~ell~~ 283 (656)
++|+|||.|.||.++|..+...|++|++||+... .+. ..+.|. .. .++++++++
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ 82 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVAD 82 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCC
Confidence 4799999999999999999999999999998752 222 113342 23 378889999
Q ss_pred CCEEEEccCCCccccccccHHHHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
||+|+.|+|...+.+..+-.+ +.. .++.+++.....+ .....+.+.+..
T Consensus 83 ad~Vi~avpe~~~~k~~~~~~-l~~~~~~~~ii~ssts~--~~~~~la~~~~~ 132 (308)
T PRK06129 83 ADYVQESAPENLELKRALFAE-LDALAPPHAILASSTSA--LLASAFTEHLAG 132 (308)
T ss_pred CCEEEECCcCCHHHHHHHHHH-HHHhCCCcceEEEeCCC--CCHHHHHHhcCC
Confidence 999999999664433332222 333 4555555433332 235556666544
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-07 Score=94.02 Aligned_cols=101 Identities=18% Similarity=0.314 Sum_probs=75.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC----EEEEECCCC-ChhHHH-HcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYA-PADKAR-AVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~----~Vi~~d~~~-~~~~a~-~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|+||+++++.+...|+ +|+++|++. ..+.+. +.|+... +..+++++||+|++|+| ......++
T Consensus 3 ~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl- 80 (272)
T PRK12491 3 KQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVI- 80 (272)
T ss_pred CeEEEECccHHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHH-
Confidence 589999999999999999987664 799999875 233333 3677554 78889999999999999 35555555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
.+....++++.++|++.-| ++.+.|.+.+.
T Consensus 81 ~~l~~~~~~~~lvISi~AG--i~i~~l~~~l~ 110 (272)
T PRK12491 81 NQIKDQIKNDVIVVTIAAG--KSIKSTENEFD 110 (272)
T ss_pred HHHHHhhcCCcEEEEeCCC--CcHHHHHHhcC
Confidence 3333446888999999876 35666666554
|
|
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.2e-06 Score=81.38 Aligned_cols=107 Identities=21% Similarity=0.292 Sum_probs=76.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC-hh-HHHHcCC-----eecCHHHHhccCCEEEEccCCCcc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-AD-KARAVGV-----ELVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~-~~-~a~~~g~-----~~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.++.+++++|+|.|.||+.+++.+...| .+|.++|++.. .+ .+...+. ...+++++++++|+|++|+|....
T Consensus 15 ~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~ 94 (155)
T cd01065 15 IELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMK 94 (155)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCC
Confidence 3467899999999999999999999885 78999998752 22 2333342 344788889999999999996653
Q ss_pred -ccc-cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 297 -TSK-IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 297 -T~~-li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
... .+.. ..++++.+++|++..+... .+.+.+++.
T Consensus 95 ~~~~~~~~~---~~~~~~~~v~D~~~~~~~~--~l~~~~~~~ 131 (155)
T cd01065 95 PGDELPLPP---SLLKPGGVVYDVVYNPLET--PLLKEARAL 131 (155)
T ss_pred CCCCCCCCH---HHcCCCCEEEEcCcCCCCC--HHHHHHHHC
Confidence 122 2332 2368999999998765432 555555553
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >PRK15040 L-serine dehydratase TdcG; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.4e-06 Score=96.16 Aligned_cols=146 Identities=10% Similarity=0.033 Sum_probs=99.2
Q ss_pred HHHHhHH-HHHhhcCC--CCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccch---HhHhhcc------
Q 006212 421 AKKLGRL-AVQLVSGG--SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNA---DFTAKQK------ 488 (656)
Q Consensus 421 aerlG~l-~~qL~~g~--~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA---~~iAke~------ 488 (656)
+.|+|+. +++|.... +.+++++++++||++ .++++|++|+|++.||+ ++..+++++.++ ...++++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~~v~i~LyGSLA-~TGkGHgTD~Avl~GLl-G~~Pd~~~~~~~~~~~~~~~~~~~l~l~ 99 (454)
T PRK15040 22 PMNAGKSFIDRLESSGLLTATSHIVVDLYGSLS-LTGKGHATDVAIIMGLA-GNSPQDVVIDEIPAFIELVTRSGRLPVA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHHhhc-cCCcccCChhhhHHHHHHHHHcCccccC
Confidence 3466655 56665410 168999999999999 99999999999999999 556666999997 6666666
Q ss_pred -Cc---------eEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeecC
Q 006212 489 -GL---------RISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASLE 557 (656)
Q Consensus 489 -GI---------~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g~ 557 (656)
|+ ++.|.....+ .|||++++++.+ .++...+..+.|+| |.+++-+ ++.-+. ..
T Consensus 100 ~G~~~i~f~~~~di~f~~~~lp----~HPN~m~~~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~~ 163 (454)
T PRK15040 100 SGAHIVDFPVAKNIIFHPEMLP----RHENGMRITAWK---------GQEELLSKTYYSVGGGFIVEEE--HFGLSH-DV 163 (454)
T ss_pred CCCccccCCCCCceEECCCCCC----CCCCeeEEEEEc---------CCCcEEEEEEEEcCCceeeecc--cccccc-CC
Confidence 76 6777644332 699999999984 23345689999998 6665431 111110 00
Q ss_pred ccEEEEEecCCC---CchhhHHhhhhcCCccccceEe
Q 006212 558 GNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSV 591 (656)
Q Consensus 558 ~~~Llv~~~D~P---GvIa~V~~iL~~~~INI~~m~v 591 (656)
..+.| -....+...-.+++++|..+-+
T Consensus 164 -------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15040 164 -------ETSVPYDFHSAGELLKMCDYNGLSISGLMM 193 (454)
T ss_pred -------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 11112 2345566677788888887755
|
|
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.5e-06 Score=94.94 Aligned_cols=115 Identities=23% Similarity=0.276 Sum_probs=82.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 283 (656)
++|||||.|.||..||..+...|++|.+||++.. .+. ..+.| +.. .++++ +++
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-~~~ 86 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALAD-LAD 86 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHH-hCC
Confidence 6799999999999999999989999999998752 222 12334 233 36765 569
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEP 350 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP 350 (656)
||+|+-|+|...+.+..+-.+.-..++++++| +|++.-.+- .+..++.. .++ .|++.|.+-|
T Consensus 87 aDlViEav~E~~~vK~~vf~~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~--~G~hff~Pa~ 150 (507)
T PRK08268 87 CDLVVEAIVERLDVKQALFAQLEAIVSPDCILATNTSSLSIT---AIAAALKHPERV--AGLHFFNPVP 150 (507)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccE--EEEeecCCcc
Confidence 99999999988887776655544457899999 599877663 45555443 344 5567666443
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.6e-06 Score=87.66 Aligned_cols=102 Identities=20% Similarity=0.217 Sum_probs=70.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h-----------HHHHcC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-----------KARAVG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-----------~a~~~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|++||++... + ...+.| +... +++ .+++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~ 82 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKD 82 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 57999999999999999999999999999987522 1 122233 2222 454 4799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
||+|++|+|...+.+.-+-.+....++++++|+....| +....+.+.+.
T Consensus 83 aDlVi~av~e~~~~k~~~~~~l~~~~~~~~il~s~ts~--~~~~~la~~~~ 131 (282)
T PRK05808 83 ADLVIEAATENMDLKKKIFAQLDEIAKPEAILATNTSS--LSITELAAATK 131 (282)
T ss_pred CCeeeecccccHHHHHHHHHHHHhhCCCCcEEEECCCC--CCHHHHHHhhC
Confidence 99999999966665543434455568999988333333 34446666664
|
|
| >cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-06 Score=70.87 Aligned_cols=70 Identities=39% Similarity=0.651 Sum_probs=62.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
|.+...|+||++++|+.+|+++++||..+.+.+...++.+.+.+.++.....+++++|+++++|.+++++
T Consensus 2 l~v~~~d~~g~l~~i~~~l~~~~~nI~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~l~~~~~V~~v~~~ 71 (71)
T cd04879 2 LLIVHKDVPGVIGKVGTILGEHGINIAAMQVGRKEKGGIAYMVLDVDSPVPEEVLEELKALPGIIRVRLI 71 (71)
T ss_pred EEEEecCCCCHHHHHHHHHHhcCCCeeeEEEeccCCCCEEEEEEEcCCCCCHHHHHHHHcCCCeEEEEEC
Confidence 6678999999999999999999999999999765445788899999888777999999999999999874
|
ACT_3PGDH-like: The ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH), with or without an extended C-terminal (xct) region found in various bacteria, archaea, fungi, and plants. 3PGDH is an enzyme that belongs to the D-isomer specific, 2-hydroxyacid dehydrogenase family and catalyzes the oxidation of D-3-phosphoglycerate to 3- phosphohydroxypyruvate, which is the first step in the biosynthesis of L-serine, using NAD+ as the oxidizing agent. In bacteria, 3PGDH is feedback controlled by the end product L-serine in an allosteric manner. In the Escherichia coli homotetrameric enzyme, the interface at adjacent ACT (regulatory) domains couples to create an extended beta-sheet. Each regulatory interface forms two serine-binding sites. The mechanism by which serine transmits inhibition to the active |
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.2e-06 Score=95.92 Aligned_cols=94 Identities=26% Similarity=0.367 Sum_probs=74.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCe----e---cCHHHHhccCCEEEEccCCC-c
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVE----L---VSFDQALATADFISLHMPLN-P 295 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~----~---~~l~ell~~aDvV~l~~Plt-~ 295 (656)
.+.++++.|+|.|.+|+.+++.++++|++|.++|++.. .+.+ ...+.. . .++.+.++++|+|+.+++.+ .
T Consensus 164 ~l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~ 243 (370)
T TIGR00518 164 GVEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGA 243 (370)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCC
Confidence 36778999999999999999999999999999998752 2222 223331 1 24677889999999998653 2
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
.+..+++++.++.||++.+|||++
T Consensus 244 ~~p~lit~~~l~~mk~g~vIvDva 267 (370)
T TIGR00518 244 KAPKLVSNSLVAQMKPGAVIVDVA 267 (370)
T ss_pred CCCcCcCHHHHhcCCCCCEEEEEe
Confidence 345688999999999999999997
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.4e-06 Score=86.79 Aligned_cols=109 Identities=19% Similarity=0.312 Sum_probs=70.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----cC--------------Cee-cCHHHHhccCCEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----VG--------------VEL-VSFDQALATADFIS 288 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----~g--------------~~~-~~l~ell~~aDvV~ 288 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .+ +.. .++++.+++||+|+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi 84 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVI 84 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEE
Confidence 5899999999999999999999999999998652 222221 12 122 36778899999999
Q ss_pred EccCCCcccc-ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEE
Q 006212 289 LHMPLNPTTS-KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (656)
Q Consensus 289 l~~Plt~~T~-~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA 341 (656)
+|+|...+.. .++ .+.-..++++++|+....| + ....+.+.+.. .++.|+
T Consensus 85 ~av~~~~~~~~~v~-~~l~~~~~~~~ii~s~tsg-~-~~~~l~~~~~~~~~~ig~ 136 (311)
T PRK06130 85 EAVPEKLELKRDVF-ARLDGLCDPDTIFATNTSG-L-PITAIAQAVTRPERFVGT 136 (311)
T ss_pred EeccCcHHHHHHHH-HHHHHhCCCCcEEEECCCC-C-CHHHHHhhcCCcccEEEE
Confidence 9999554322 333 2222346777776433333 2 34466655543 344343
|
|
| >cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.7e-06 Score=70.39 Aligned_cols=71 Identities=32% Similarity=0.652 Sum_probs=61.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
+|.+.+.|+||+++.++..|+++++||.++.......++.+.+.+.+++...++++++|+++++|.+++++
T Consensus 1 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~~~~~~~i~i~v~~~~~~~~i~~l~~~~~v~~v~~~ 71 (71)
T cd04903 1 TLIVVHKDKPGAIAKVTSVLADHEINIAFMRVSRKEKGDQALMVIEVDQPIDEEVIEEIKKIPNIHQVILI 71 (71)
T ss_pred CEEEEeCCCCChHHHHHHHHHHcCcCeeeeEEEeccCCCeEEEEEEeCCCCCHHHHHHHHcCCCceEEEEC
Confidence 46678899999999999999999999999988653346778888999988777999999999999999874
|
The C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit, found in various bacterial anaerobes such as Clostridium, Bacillis, and Treponema species. These enzymes catalyze the deamination of L-serine, producing pyruvate and ammonia. Unlike the eukaryotic L-serine dehydratase, which requires the pyridoxal-5'-phosphate (PLP) cofactor, the prokaryotic L-serine dehydratase contains an [4Fe-4S] cluster instead of a PLP active site. The LSD alpha and beta subunits of the 'clostridial' enzyme are encoded by the sdhA and sdhB genes. The single subunit bacterial homologs of L-serine dehydratase (LSD1, LSD2, TdcG) present in Escherichia coli, and other enterobacterials, lack the ACT domain described here. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=98.32 E-value=6.4e-06 Score=91.32 Aligned_cols=100 Identities=26% Similarity=0.345 Sum_probs=69.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHH-------------------HcC-Cee-cCHHHHhccCCEEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------------------AVG-VEL-VSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~-------------------~~g-~~~-~~l~ell~~aDvV~ 288 (656)
+|||||+|.||..+|..|...|++|++||++... +... ..| +.. .++++++++||+|+
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvi 81 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVII 81 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEE
Confidence 7999999999999999999999999999987532 1111 123 333 36788899999999
Q ss_pred EccCCCccc------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006212 289 LHMPLNPTT------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALV 330 (656)
Q Consensus 289 l~~Plt~~T------~~li~--~~~l~~mK~gailINvaRg~ivde~aL~ 330 (656)
+|+|..... ..+.. ......+++|.++|+++.-.+=..+.+.
T Consensus 82 i~vpt~~~~~~~~d~~~v~~~~~~i~~~l~~g~lvi~~STv~pgt~~~l~ 131 (411)
T TIGR03026 82 ICVPTPLKEDGSPDLSYVESAAETIAKHLRKGATVVLESTVPPGTTEEVV 131 (411)
T ss_pred EEeCCCCCCCCCcChHHHHHHHHHHHHhcCCCCEEEEeCcCCCCchHHHH
Confidence 999943221 11221 3345568999999999864443344453
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.31 E-value=2.1e-06 Score=90.26 Aligned_cols=102 Identities=11% Similarity=0.151 Sum_probs=73.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCC-h-hH-HHHcCCeec-CHHHHhccCCEEEEccCCCcccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP-A-DK-ARAVGVELV-SFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~-~-~~-a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+|||||+|+||+++|+.+...| .+|+++|+... . +. ....|+... +..+++++||+|++|+| .......
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~v 81 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEA 81 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHH
Confidence 568999999999999999998776 78999998642 1 22 233577544 78889999999999999 3344444
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+ ......++++.+||++.-|- ..+.+.+.+.
T Consensus 82 l-~~l~~~~~~~~liIs~~aGi--~~~~l~~~~~ 112 (279)
T PRK07679 82 L-IPFKEYIHNNQLIISLLAGV--STHSIRNLLQ 112 (279)
T ss_pred H-HHHHhhcCCCCEEEEECCCC--CHHHHHHHcC
Confidence 4 33344567889999986443 4455555443
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.4e-05 Score=84.49 Aligned_cols=113 Identities=21% Similarity=0.245 Sum_probs=75.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH--------------cCC-------------eec-CHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA--------------VGV-------------ELV-SFDQA 280 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~--------------~g~-------------~~~-~l~el 280 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .|. ... ++ +.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~ 82 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ES 82 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HH
Confidence 6899999999999999999999999999998752 221110 111 122 34 56
Q ss_pred hccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~ 347 (656)
+++||+|+.|+|...+.+..+-++.-..++++++|+.+..|- ....+.+.+.. .++ .+++.|.
T Consensus 83 ~~~aDlVieav~e~~~~k~~~~~~l~~~~~~~~il~S~tsg~--~~~~la~~~~~~~r~--ig~hf~~ 146 (291)
T PRK06035 83 LSDADFIVEAVPEKLDLKRKVFAELERNVSPETIIASNTSGI--MIAEIATALERKDRF--IGMHWFN 146 (291)
T ss_pred hCCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEEcCCCC--CHHHHHhhcCCcccE--EEEecCC
Confidence 799999999999665434333333444578999998877764 44555555543 344 4445443
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=91.35 Aligned_cols=104 Identities=23% Similarity=0.254 Sum_probs=72.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHH-------------------HcC-Ceec-CHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKAR-------------------AVG-VELV-SFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~-------------------~~g-~~~~-~l~ell~~aDvV 287 (656)
++|||||.|.||.++|.++...|++|.+||+.... +... ..| +..+ ++++++++||+|
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~V 84 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWI 84 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEE
Confidence 58999999999999999999999999999997522 1111 112 3333 788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+.++|...+.+..+-.+.-..++++++| +++..++ ....+.+.+..
T Consensus 85 ieavpe~~~vk~~l~~~l~~~~~~~~iI-~SsTsgi-~~s~l~~~~~~ 130 (495)
T PRK07531 85 QESVPERLDLKRRVLAEIDAAARPDALI-GSSTSGF-LPSDLQEGMTH 130 (495)
T ss_pred EEcCcCCHHHHHHHHHHHHhhCCCCcEE-EEcCCCC-CHHHHHhhcCC
Confidence 9999977655553333344457888754 5554444 34466665544
|
|
| >PRK15023 L-serine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=4.1e-06 Score=92.44 Aligned_cols=145 Identities=13% Similarity=0.046 Sum_probs=96.0
Q ss_pred HHHHhHH-HHHhhcC--CCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccc------------cccchHhHh
Q 006212 421 AKKLGRL-AVQLVSG--GSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFI------------NLVNADFTA 485 (656)
Q Consensus 421 aerlG~l-~~qL~~g--~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~v------------n~vNA~~iA 485 (656)
+.|+|+. +++|... .+.+++++++++||++ .+.++|++|+|++.||++ +..+++ +..+++.++
T Consensus 22 Pmraa~~F~~~L~~~~~l~~~~rv~v~LyGSLA-~TGkGHGTD~Avl~GL~G-~~Pd~~d~~~~~~~~~~~~~~~~l~la 99 (454)
T PRK15023 22 PMKAGKQFVDDLVEKGLLDSVTRVAVDVYGSLS-LTGKGHHTDIAIIMGLAG-NEPATVDIDSIPGFIRDVEERERLLLA 99 (454)
T ss_pred HHHHHHHHHHHHhhccccCCccEEEEEEEchhh-hcCCCccccHHHHhhhcc-CCCCCcChhhhHHHHHHHhhcCccccC
Confidence 4567775 6777631 1268999999999999 999999999999999994 444446 557788888
Q ss_pred hccCceEEEE--------EeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-CeeEEEEEcceeEEeec
Q 006212 486 KQKGLRISEE--------RVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-GIPHLTRVGSFGVDASL 556 (656)
Q Consensus 486 ke~GI~v~~~--------~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G~~rI~~IdGf~V~~~g 556 (656)
+++ +.+.|. .... ..|||++++++.+ .++...+..+.|+| |.+++-+ ++.-+. .
T Consensus 100 ~~~-~~i~F~~~~di~f~~~~l----p~HPN~m~f~a~~---------~~~~~~e~~~ySIGGGfI~~~~--~~~~~~-~ 162 (454)
T PRK15023 100 QGR-HEVDFPRDNGMRFHNGNL----PLHENGMQIHAYN---------GDEVVYSKTYYSIGGGFIVDEE--HFGQDA-A 162 (454)
T ss_pred CCC-ceeecCcccceeECCCCC----CCCCCeeEEEEEe---------CCCcEEEEEEEEcCCceeeecc--cccccc-c
Confidence 665 666662 2222 2699999999984 23345689999998 6676542 111110 0
Q ss_pred CccEEEEEecCCC---CchhhHHhhhhcCCccccceEe
Q 006212 557 EGNLILCRQVDQP---GMIGKVGNILGEHNVNVNFMSV 591 (656)
Q Consensus 557 ~~~~Llv~~~D~P---GvIa~V~~iL~~~~INI~~m~v 591 (656)
. ..+-| -....+...-.+++++|..+-+
T Consensus 163 ~-------~~~~py~f~s~~ell~~c~~~~~~i~e~v~ 193 (454)
T PRK15023 163 N-------EVSVPYPFKSATELLAYCNETGYSLSGLAM 193 (454)
T ss_pred C-------CCCCCcCCCCHHHHHHHHHHhCCCHHHHHH
Confidence 0 11222 2344566666777888877655
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.7e-05 Score=82.44 Aligned_cols=99 Identities=20% Similarity=0.298 Sum_probs=67.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC---CEEEEECCCC-ChhHHHH-cCCeec-CHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYA-PADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G---~~Vi~~d~~~-~~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||+|.||+.+|+.+...| .+|.+||++. ..+...+ .|+... +.++++.+||+|++|+|.. ....++..
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~~-~~~~v~~~ 81 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKPQ-VMEEVLSE 81 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCHH-HHHHHHHH
Confidence 57999999999999999998777 7899999875 2333333 366543 6788899999999999832 33333322
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
....+ +..||.+.-|- ..+.+.+.+.
T Consensus 82 -l~~~~--~~~vvs~~~gi--~~~~l~~~~~ 107 (267)
T PRK11880 82 -LKGQL--DKLVVSIAAGV--TLARLERLLG 107 (267)
T ss_pred -HHhhc--CCEEEEecCCC--CHHHHHHhcC
Confidence 22223 35677765442 4556655554
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.8e-06 Score=88.28 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=68.8
Q ss_pred cccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|.+ |+.+|..|...|+.|..++... -++.+.+++||+|+.++| +.+++
T Consensus 152 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt~~hs~t------------~~l~~~~~~ADIVV~avG----~~~~i 215 (285)
T PRK14189 152 IGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVTICHSKT------------RDLAAHTRQADIVVAAVG----KRNVL 215 (285)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEecCCC------------CCHHHHhhhCCEEEEcCC----CcCcc
Confidence 467999999999999999 9999999999999999876431 257889999999999999 45678
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
+. ..+|+|+++||+|--.
T Consensus 216 ~~---~~ik~gavVIDVGin~ 233 (285)
T PRK14189 216 TA---DMVKPGATVIDVGMNR 233 (285)
T ss_pred CH---HHcCCCCEEEEccccc
Confidence 77 4479999999998543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.22 E-value=3.7e-06 Score=89.00 Aligned_cols=80 Identities=18% Similarity=0.216 Sum_probs=66.0
Q ss_pred cccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+++||| .|.+|+.+|.+|...|+.|.+|+.+.. ++++++++||+|+++++... ++
T Consensus 152 ~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~~rT~------------~l~e~~~~ADIVIsavg~~~----~v 215 (296)
T PRK14188 152 VHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAHSRTR------------DLPAVCRRADILVAAVGRPE----MV 215 (296)
T ss_pred hCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEECCCCC------------CHHHHHhcCCEEEEecCChh----hc
Confidence 35689999999999 999999999999999999999963211 47889999999999999543 34
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
.... +|+|+++||+|--
T Consensus 216 ~~~~---lk~GavVIDvGin 232 (296)
T PRK14188 216 KGDW---IKPGATVIDVGIN 232 (296)
T ss_pred chhe---ecCCCEEEEcCCc
Confidence 4332 8999999999843
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=5e-05 Score=86.13 Aligned_cols=185 Identities=21% Similarity=0.255 Sum_probs=112.5
Q ss_pred CCeEEE-EcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCC--hhhHHHHHHHHHHHH--Hhc
Q 006212 130 QCDALI-VRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIAN--TVAAAEHGIALLASM--ARN 204 (656)
Q Consensus 130 ~~d~li-v~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n--~~~vAE~~lal~L~~--~R~ 204 (656)
++|+|+ +. +.+.+-++.++++--+|+...-..|.=-++++.++||.+..---.. +.+-.=.+++-|-.+ .|-
T Consensus 65 ~~diilkV~---~P~~~e~~~l~~g~~li~~l~p~~~~~l~~~l~~~~it~ia~e~vpr~sraq~~d~lssma~IAGy~A 141 (509)
T PRK09424 65 QSDIILKVN---APSDDEIALLREGATLVSFIWPAQNPELLEKLAARGVTVLAMDAVPRISRAQSLDALSSMANIAGYRA 141 (509)
T ss_pred cCCEEEEeC---CCCHHHHHhcCCCCEEEEEeCcccCHHHHHHHHHcCCEEEEeecccccccCCCcccccchhhhhHHHH
Confidence 578777 32 2345556666656677777666555555788899999887532211 000000111111111 111
Q ss_pred hhHHHHHHHccccccccc-cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--CH---
Q 006212 205 VSQADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SF--- 277 (656)
Q Consensus 205 i~~~~~~~~~g~W~~~~~-~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--~l--- 277 (656)
+..+.. .-++...... .--...|.+|.|+|.|.+|...++.++.+|.+|+++|.+. ..+.++++|...+ +.
T Consensus 142 v~~aa~--~~~~~~~g~~taaG~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~ 219 (509)
T PRK09424 142 VIEAAH--EFGRFFTGQITAAGKVPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEE 219 (509)
T ss_pred HHHHHH--HhcccCCCceeccCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccc
Confidence 111111 1111111000 0013469999999999999999999999999999999886 5677888887632 11
Q ss_pred -----------------------HHHhccCCEEEEccCCCcc-ccccccHHHHhcCCCCcEEEEcC
Q 006212 278 -----------------------DQALATADFISLHMPLNPT-TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 -----------------------~ell~~aDvV~l~~Plt~~-T~~li~~~~l~~mK~gailINva 319 (656)
.+.++.+|+|+.|+..... .-.++.++.++.||+|.+++|++
T Consensus 220 ~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 220 GGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred cccccchhhhcchhHHHHHHHHHHhccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 1112579999998863221 23355688999999999999997
|
|
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.2e-06 Score=88.25 Aligned_cols=89 Identities=25% Similarity=0.442 Sum_probs=72.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC-C-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-A-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~-~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
-|.||||+|||||.-|..=|..|+..|.+|++--+. . +.+.|.+.|+++.+.+|++++||+|.+.+|... ...++..
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V~~v~ea~k~ADvim~L~PDe~-q~~vy~~ 93 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKVYTVEEAAKRADVVMILLPDEQ-QKEVYEK 93 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEeecHHHHhhcCCEEEEeCchhh-HHHHHHH
Confidence 589999999999999999999999999998764433 2 578899999999999999999999999999433 3345555
Q ss_pred HHHhcCCCCcEE
Q 006212 304 ETFAKMKKGVRI 315 (656)
Q Consensus 304 ~~l~~mK~gail 315 (656)
+.-..||+|..|
T Consensus 94 ~I~p~Lk~G~aL 105 (338)
T COG0059 94 EIAPNLKEGAAL 105 (338)
T ss_pred HhhhhhcCCceE
Confidence 555667877643
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=4.7e-06 Score=87.45 Aligned_cols=103 Identities=17% Similarity=0.263 Sum_probs=74.0
Q ss_pred CCEEEEEecChhHHHHHHHHhc--CCCEEE-EECCCCCh--hHHHHcCC--eecCHHHHhccCCEEEEccCCCccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG--LGMNVI-AHDPYAPA--DKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~--~G~~Vi-~~d~~~~~--~~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
..+|||||+|.||+.+++.+.. .++++. +||+.... +.+...|. .+.++++++.++|+|++|+|.. +..-+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~--~h~e~ 83 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS--VLRAI 83 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH--HHHHH
Confidence 4789999999999999999985 488876 57876522 23344453 2458999999999999999943 22222
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
. ...++.|.-++..+.+.+.+.++|.++.+++
T Consensus 84 ~---~~aL~aGk~Vi~~s~gal~~~~~L~~~A~~~ 115 (271)
T PRK13302 84 V---EPVLAAGKKAIVLSVGALLRNEDLIDLARQN 115 (271)
T ss_pred H---HHHHHcCCcEEEecchhHHhHHHHHHHHHHc
Confidence 2 3335666666777788887788888877664
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.7e-05 Score=88.58 Aligned_cols=116 Identities=23% Similarity=0.251 Sum_probs=80.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-----------HHHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-----------ARAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-----------a~~~g-------------~~~-~~l~ell~~ 283 (656)
++|||||.|.||..||..+...|++|.+||++.. .+. ..+.| +.. .++++ +++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~-l~~ 84 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHA-LAD 84 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHH-hCC
Confidence 5799999999999999999999999999998752 221 12223 122 36765 579
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPP 351 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~ 351 (656)
||+|+.|+|...+.+..+-.+.-..++++++|. |++.-.+ ..+.+.++. .++ .|++.|.+-|.
T Consensus 85 aDlVIEav~E~~~vK~~vf~~l~~~~~~~~IlasnTStl~i---~~iA~~~~~p~r~--~G~HFf~Papv 149 (503)
T TIGR02279 85 AGLVIEAIVENLEVKKALFAQLEELCPADTIIASNTSSLSI---TAIAAGLARPERV--AGLHFFNPAPV 149 (503)
T ss_pred CCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCCCH---HHHHHhcCcccce--EEEeccCcccc
Confidence 999999999887777665555445688888876 7765554 345555543 334 66777664443
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.18 E-value=7.7e-06 Score=87.83 Aligned_cols=86 Identities=29% Similarity=0.357 Sum_probs=68.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--------C------Cee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------G------VEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--------g------~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|||.|.||..+|.+|...|++|.+|+++.. .+..... | +.. .++++.++.+|+|++++|.
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~ 84 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPS 84 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECch
Confidence 5799999999999999999999999999999742 2222222 3 222 3788889999999999995
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
.. + ++.++.++++.++|+++.|
T Consensus 85 ~~-~-----~~v~~~l~~~~~vi~~~~G 106 (328)
T PRK14618 85 KA-L-----RETLAGLPRALGYVSCAKG 106 (328)
T ss_pred HH-H-----HHHHHhcCcCCEEEEEeec
Confidence 52 2 5566779999999999987
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=98.17 E-value=7.4e-06 Score=86.79 Aligned_cols=106 Identities=19% Similarity=0.246 Sum_probs=77.9
Q ss_pred HHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|+.||++|...|+.|++||++... +.+.+.|+..+ +..+++++||+|++|+|..+.++.++ ...+..+++|+
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl-~GLaa~L~~Ga 110 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIA-RTIIEHVPENA 110 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHH-HHHHhcCCCCC
Confidence 889999999999999999986421 24566788766 69999999999999999777777776 55788899999
Q ss_pred EEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCC
Q 006212 314 RIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEP 350 (656)
Q Consensus 314 ilINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP 350 (656)
++||++..... .++..|+.. +..---+-|...+|
T Consensus 111 IVID~STIsP~---t~~~~~e~~l~~~r~d~~v~s~HP 145 (341)
T TIGR01724 111 VICNTCTVSPV---VLYYSLEKILRLKRTDVGISSMHP 145 (341)
T ss_pred EEEECCCCCHH---HHHHHHHHHhhcCccccCeeccCC
Confidence 99999876554 444444331 11112234566666
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=3.9e-06 Score=89.38 Aligned_cols=90 Identities=22% Similarity=0.285 Sum_probs=67.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc--------------CCee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV--------------GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~--------------g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||+|.||..+|.+|...|++|.+||+.. ..+...+. ++.. .++++.+++||+|++|+|.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~ 81 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS 81 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH
Confidence 479999999999999999999999999999874 22333332 2333 3788889999999999994
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
..+..++ ......+++++++|++..|
T Consensus 82 -~~~~~v~-~~l~~~~~~~~~vi~~~ng 107 (325)
T PRK00094 82 -QALREVL-KQLKPLLPPDAPIVWATKG 107 (325)
T ss_pred -HHHHHHH-HHHHhhcCCCCEEEEEeec
Confidence 4455555 2344557889999999754
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=3e-05 Score=85.46 Aligned_cols=128 Identities=14% Similarity=0.173 Sum_probs=81.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH----------------cCCee---cCHHHHhccCCEEEEc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA----------------VGVEL---VSFDQALATADFISLH 290 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~----------------~g~~~---~~l~ell~~aDvV~l~ 290 (656)
+|+|||+|.||..+|..+. .|++|++||..... +...+ .+... .+..+.+++||+|++|
T Consensus 2 kI~VIGlGyvGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~ 80 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIA 80 (388)
T ss_pred EEEEECCCHHHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEe
Confidence 6999999999999997665 59999999987532 22211 12222 1367788999999999
Q ss_pred cCCCcccc-cccc------H-HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC---Ccccc
Q 006212 291 MPLNPTTS-KIFN------D-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLVQ 359 (656)
Q Consensus 291 ~Plt~~T~-~li~------~-~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~~L~~ 359 (656)
+|...+-+ ...+ . +.+..+++|.++|+.+.-.+=..+.+.+.+.+..+ +|.+|..... ..++.
T Consensus 81 Vpt~~~~k~~~~dl~~v~~v~~~i~~~~~g~lVV~~STv~pgtt~~l~~~~~~~~v------~~~PE~l~~G~a~~d~~~ 154 (388)
T PRK15057 81 TPTDYDPKTNYFNTSSVESVIKDVVEINPYAVMVIKSTVPVGFTAAMHKKYRTENI------IFSPEFLREGKALYDNLH 154 (388)
T ss_pred CCCCCccCCCCcChHHHHHHHHHHHhcCCCCEEEEeeecCCchHHHHHHHhhcCcE------EECcccccCCcccccccC
Confidence 99442211 1111 1 22334799999999998776566777666654333 1455644322 23455
Q ss_pred CCcEEE
Q 006212 360 HENVTV 365 (656)
Q Consensus 360 ~~nvil 365 (656)
.|.+++
T Consensus 155 p~rvv~ 160 (388)
T PRK15057 155 PSRIVI 160 (388)
T ss_pred CCEEEE
Confidence 556643
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=6.5e-06 Score=86.53 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=66.3
Q ss_pred cccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||+++|||. |.+|+.+|..|...|+.|..|.... .++.+.+++||+|+.+++... ++
T Consensus 152 ~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVI~avg~~~----~v 215 (284)
T PRK14179 152 YNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTLTHSRT------------RNLAEVARKADILVVAIGRGH----FV 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEecCccc----cC
Confidence 477999999999999 9999999999999999999984321 158889999999999999443 45
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
.... +|+|+++||+|-
T Consensus 216 ~~~~---ik~GavVIDvgi 231 (284)
T PRK14179 216 TKEF---VKEGAVVIDVGM 231 (284)
T ss_pred CHHH---ccCCcEEEEecc
Confidence 5443 799999999983
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=1.5e-06 Score=86.94 Aligned_cols=176 Identities=13% Similarity=0.195 Sum_probs=104.1
Q ss_pred EEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|||- |.+|+-+++.++..|+.|. +++||+|++|+|.. .+. +.+..+
T Consensus 2 ~~~iiG~~G~mG~~~~~~~~~~g~~v~------------------------~~~~DlVilavPv~-~~~-----~~i~~~ 51 (197)
T PRK06444 2 MEIIIGKNGRLGRVLCSILDDNGLGVY------------------------IKKADHAFLSVPID-AAL-----NYIESY 51 (197)
T ss_pred EEEEEecCCcHHHHHHHHHHhCCCEEE------------------------ECCCCEEEEeCCHH-HHH-----HHHHHh
Confidence 7899988 9999999999999999985 36899999999944 233 333334
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCC----CCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHH
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP----AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~----~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~ 385 (656)
. .+|+|+++-+-- +.+. .+ ++-+..|+ .+...|+ .++++++. ....++ .
T Consensus 52 ~--~~v~Dv~SvK~~----i~~~--~~-------~~vg~HPMfGp~~a~~~lf--~~~iv~~~--~~~~~~--------~ 104 (197)
T PRK06444 52 D--NNFVEISSVKWP----FKKY--SG-------KIVSIHPLFGPMSYNDGVH--RTVIFIND--ISRDNY--------L 104 (197)
T ss_pred C--CeEEeccccCHH----HHHh--cC-------CEEecCCCCCCCcCccccc--ceEEEECC--CCCHHH--------H
Confidence 3 379999975541 2221 11 33344443 2333455 46666543 222222 2
Q ss_pred HHHHHHHcCCCCCccccCCCCChhhhhhccchHHH-HHHHhHHH----HHhhcCCCCceEEEEEE----eecCCCCCccc
Q 006212 386 EAVVGALRGELSATAINAPMVPSEVLSELAPYVVL-AKKLGRLA----VQLVSGGSGIKSVKLIY----RSARDPDDLDT 456 (656)
Q Consensus 386 ~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~l-aerlG~l~----~qL~~g~~~~k~i~i~~----~Gs~a~~~~~~ 456 (656)
+.+.++++|- ..-.++++.++++--|+.- ..-++... ..++++ +|++.++.. .+++. +|.++
T Consensus 105 ~~~~~l~~G~------~~~~~t~eeHD~~~A~ishLpH~ia~al~~~~~~~~t~--~fr~l~ria~~~~~~~p~-lw~dI 175 (197)
T PRK06444 105 NEINEMFRGY------HFVEMTADEHDLLMSEIMVKPYIISMILKDIKSDIKTG--SFDKLLEVSEIKEKENWE-VFNDT 175 (197)
T ss_pred HHHHHHHcCC------EEEEeCHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCc--cHHHHHHHHHHhccCCHH-HHHHH
Confidence 3455556542 1124556666655432211 11122211 244555 788888776 78887 89999
Q ss_pred ccccHHHHHHhhhhhhhc
Q 006212 457 RILRAMITKGIIEPISAS 474 (656)
Q Consensus 457 ~~~~~a~l~GlL~~~~~~ 474 (656)
...|... +.+..+.+.
T Consensus 176 ~~~N~~a--~~~~~~~~~ 191 (197)
T PRK06444 176 IIYNPYT--NVINDLIER 191 (197)
T ss_pred HHHCchH--HHHHHHHHH
Confidence 8888766 566555443
|
|
| >PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.6e-06 Score=68.77 Aligned_cols=65 Identities=26% Similarity=0.399 Sum_probs=55.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCCCHHHHHHHhcCCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEPNQDSLKEIGKVPA 623 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~~~e~l~~L~~~~~ 623 (656)
|.+.+..+|+||++++|+++|+++|+||..+...+... ....++.+..+....+.++++|+++++
T Consensus 1 ~~v~v~~~drpG~l~~v~~~la~~~inI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 66 (66)
T PF01842_consen 1 YRVRVIVPDRPGILADVTEILADHGINIDSISQSSDKDGVGIVFIVIVVDEEDLEKLLEELEALPG 66 (66)
T ss_dssp EEEEEEEETSTTHHHHHHHHHHHTTEEEEEEEEEEESSTTEEEEEEEEEEGHGHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCHHHeEEEecCCCceEEEEEEECCCCCHHHHHHHHHcccC
Confidence 45778899999999999999999999999999987665 345666777888888899999998764
|
ACT domains are linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. The archetypical ACT domain is the C-terminal regulatory domain of 3-phosphoglycerate dehydrogenase (3PGDH), which folds with a ferredoxin-like topology. A pair of ACT domains form an eight-stranded antiparallel sheet with two molecules of allosteric inhibitor serine bound in the interface. Biochemical exploration of a few other proteins containing ACT domains supports the suggestions that these domains contain the archetypical ACT structure [].; GO: 0016597 amino acid binding, 0008152 metabolic process; PDB: 3L76_B 2F06_B 3NRB_C 1Y7P_C 2QMX_A 2DT9_A 2ZHO_D 3K5P_A 3TVI_K 3C1M_C .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=80.73 Aligned_cols=115 Identities=20% Similarity=0.317 Sum_probs=89.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHH---hccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQA---LATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~el---l~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+++|.||||+||..+++|++..|.+|++||.++ ..+.+...|+... +++++ +..-.+|-+.+|-.+-|..++ ++
T Consensus 1 M~iGmiGLGrMG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi-~~ 79 (300)
T COG1023 1 MQIGMIGLGRMGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVI-DD 79 (300)
T ss_pred CcceeeccchhhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHH-HH
Confidence 479999999999999999999999999999987 5566777786543 67765 566789999999886676666 44
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~ 347 (656)
.-..|.+|-++||-+-..--|.....+.|++..| ..+||-.
T Consensus 80 la~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi--~flD~GT 120 (300)
T COG1023 80 LAPLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGI--HFLDVGT 120 (300)
T ss_pred HHhhcCCCCEEEECCccchHHHHHHHHHHHhcCC--eEEeccC
Confidence 5556899999999886655555555666777767 5567644
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.4e-06 Score=84.98 Aligned_cols=100 Identities=11% Similarity=0.240 Sum_probs=71.8
Q ss_pred EEEEEecChhHHHHHHHHhcCC----CEEEEECCCC-ChhHHHH-c-CCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYA-PADKARA-V-GVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~-~~~~a~~-~-g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+|||||+|.||+.+|+.|...| .+|.+||++. ..+...+ . |+... +..+++.+||+|++|+| ......++
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl- 79 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLL- 79 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHH-
Confidence 6999999999999999998777 3799999875 2222222 2 56544 78888999999999998 33344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
++....++++.+||+++-| + ..+.|.+.+.
T Consensus 80 ~~l~~~l~~~~~iis~~ag-~-~~~~L~~~~~ 109 (273)
T PRK07680 80 QKLAPHLTDEHCLVSITSP-I-SVEQLETLVP 109 (273)
T ss_pred HHHHhhcCCCCEEEEECCC-C-CHHHHHHHcC
Confidence 3333457788999999854 3 6666665544
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.05 E-value=1e-05 Score=84.01 Aligned_cols=99 Identities=13% Similarity=0.254 Sum_probs=69.6
Q ss_pred EEEEEecChhHHHHHHHHhcCCC---EEEEECCCCC-hhHH-HHc-CCee-cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAP-ADKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d~~~~-~~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
+|||||+|+||+++++.+...|. .+.+||++.. .+.. ... ++.. .+.++++++||+|++|+| ......++..
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~ 80 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA 80 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 79999999999999999987664 3578888652 2222 223 3544 378889999999999999 3434444432
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+ .++++.++|.+.-| +..+.|.+.++.
T Consensus 81 --l-~~~~~~~vis~~ag--~~~~~l~~~~~~ 107 (258)
T PRK06476 81 --L-RFRPGQTVISVIAA--TDRAALLEWIGH 107 (258)
T ss_pred --h-ccCCCCEEEEECCC--CCHHHHHHHhCC
Confidence 2 25788899998733 466777666654
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=98.05 E-value=2e-05 Score=77.08 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=68.6
Q ss_pred cccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+.||++.|||.|.+ |..+|+.|+..|.+|...+++. .++.+.+.+||+|+.+++.. +++..
T Consensus 40 ~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~~------------~~l~~~l~~aDiVIsat~~~----~ii~~ 103 (168)
T cd01080 40 IDLAGKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSKT------------KNLKEHTKQADIVIVAVGKP----GLVKG 103 (168)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECCc------------hhHHHHHhhCCEEEEcCCCC----ceecH
Confidence 5799999999999996 8889999999999999988762 24778899999999999833 26777
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivd 325 (656)
+. ++++.++||+|.-.-+|
T Consensus 104 ~~---~~~~~viIDla~prdvd 122 (168)
T cd01080 104 DM---VKPGAVVIDVGINRVPD 122 (168)
T ss_pred HH---ccCCeEEEEccCCCccc
Confidence 64 58899999999777665
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.9e-05 Score=83.35 Aligned_cols=138 Identities=17% Similarity=0.250 Sum_probs=98.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhc-cCCEEEEccCCCccccccccHHHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALA-TADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~-~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
-+.|||||+|++|+-+|+.+...|..|+.+|+....+.+...|... ..+.++++ +.|+|.+|+- ...+..++..--+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRsdyssaa~~yg~~~ft~lhdlcerhpDvvLlcts-ilsiekilatypf 130 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRSDYSSAAEKYGSAKFTLLHDLCERHPDVVLLCTS-ILSIEKILATYPF 130 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcchhHHHHHHhcccccccHHHHHhcCCCEEEEEeh-hhhHHHHHHhcCc
Confidence 3579999999999999999999999999999987666777788754 46777764 7999999986 3334455544456
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
+++|.|++++++-+-+-..-+++.+-|.+. -|. ..=-.|+++ ..++..-.+|-|+.--.+|
T Consensus 131 qrlrrgtlfvdvlSvKefek~lfekYLPkdfDIl-ctHpmfGPk--svnh~wqglpfVydkvRig 192 (480)
T KOG2380|consen 131 QRLRRGTLFVDVLSVKEFEKELFEKYLPKDFDIL-CTHPMFGPK--SVNHEWQGLPFVYDKVRIG 192 (480)
T ss_pred hhhccceeEeeeeecchhHHHHHHHhCccccceE-eecCCcCCC--cCCCccccCceEEEEeecc
Confidence 779999999999988877777777766653 221 111233333 3344444567676655444
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.8e-05 Score=81.91 Aligned_cols=80 Identities=21% Similarity=0.295 Sum_probs=67.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|++|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVtv~~s~t------------~~l~~~~~~ADIVIsAvg~----p~~i 215 (286)
T PRK14175 152 ADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVTILHSRS------------KDMASYLKDADVIVSAVGK----PGLV 215 (286)
T ss_pred cCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHHhhCCEEEECCCC----Cccc
Confidence 46789999999999998 99999999999999999987642 2578899999999999983 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. +|+|+++||+|--
T Consensus 216 ~~~~---vk~gavVIDvGi~ 232 (286)
T PRK14175 216 TKDV---VKEGAVIIDVGNT 232 (286)
T ss_pred CHHH---cCCCcEEEEcCCC
Confidence 7654 6999999999853
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.4e-05 Score=82.17 Aligned_cols=105 Identities=26% Similarity=0.346 Sum_probs=73.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-----------------c-CHHHHhccCCEEEEcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-----------------V-SFDQALATADFISLHM 291 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-----------------~-~l~ell~~aDvV~l~~ 291 (656)
++|+|||.|.||..+|.+|...|.+|.+||+....+...+.|... . +. +.++.+|+|++++
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~v 81 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLIGRARIGDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTV 81 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEEecHHHHHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEe
Confidence 479999999999999999999999999999854333334444321 2 33 5678999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
|. ++....+ ......++++++|+.+.-| +-..+.+.+.+...++
T Consensus 82 k~-~~~~~~~-~~l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~~~~ 125 (341)
T PRK08229 82 KS-AATADAA-AALAGHARPGAVVVSFQNG-VRNADVLRAALPGATV 125 (341)
T ss_pred cC-cchHHHH-HHHHhhCCCCCEEEEeCCC-CCcHHHHHHhCCCCcE
Confidence 94 4444444 3344557889999988653 4345666666665444
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.92 E-value=4.8e-05 Score=80.01 Aligned_cols=101 Identities=13% Similarity=0.241 Sum_probs=70.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCCh--hHH-HHc-CCee-cCHHHHhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPA--DKA-RAV-GVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~--~~a-~~~-g~~~-~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
.+|+|||+|+||+.+|+.+...| .+|++|+++... +.. ... ++.. .+..++++++|+|++|+| ......+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~v 80 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPL 80 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHH
Confidence 47999999999999999998776 689999876421 111 222 2333 478888999999999999 3333333
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
+ .+....++++..||.+.-| +..+.|.+.+.
T Consensus 81 l-~~l~~~l~~~~~ivS~~aG--i~~~~l~~~~~ 111 (277)
T PRK06928 81 L-KDCAPVLTPDRHVVSIAAG--VSLDDLLEITP 111 (277)
T ss_pred H-HHHHhhcCCCCEEEEECCC--CCHHHHHHHcC
Confidence 3 2222346778899998876 45667766554
|
|
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.90 E-value=6.5e-05 Score=64.97 Aligned_cols=67 Identities=31% Similarity=0.482 Sum_probs=56.8
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcC-CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+.+++++|+|.|.+|+.++..+... +.+|.+||+ |+++.|+|.. +.+.+
T Consensus 19 ~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r------------------------di~i~~~~~~----~~~~~ 70 (86)
T cd05191 19 KSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR------------------------DILVTATPAG----VPVLE 70 (86)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC------------------------CEEEEcCCCC----CCchH
Confidence 458899999999999999999999987 678999987 9999999843 34455
Q ss_pred HHHhcCCCCcEEEEcC
Q 006212 304 ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~mK~gailINva 319 (656)
+....++++++++|++
T Consensus 71 ~~~~~~~~~~~v~~~a 86 (86)
T cd05191 71 EATAKINEGAVVIDLA 86 (86)
T ss_pred HHHHhcCCCCEEEecC
Confidence 5678899999999975
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.86 E-value=3.9e-05 Score=86.23 Aligned_cols=110 Identities=15% Similarity=0.159 Sum_probs=88.0
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-----CCee-cCHHHHhcc---CCEEEEccCCCccccccccHHHHhcC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-----g~~~-~~l~ell~~---aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
||+.||++|...|++|.+||++.. .+...+. |+.. .+++++++. +|+|++++|..+.+..++ ...+..|
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi-~~l~~~l 79 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVI-EQLLPLL 79 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHH-HHHHhcC
Confidence 799999999999999999999863 2333332 3544 489998875 899999999888888888 4678889
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.+|.++||++....-+...+.+.+++..+.....=|++.++
T Consensus 80 ~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~ 120 (459)
T PRK09287 80 EKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEE 120 (459)
T ss_pred CCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHH
Confidence 99999999999888888888888888777555555777664
|
|
| >cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.8e-05 Score=62.43 Aligned_cols=69 Identities=14% Similarity=0.313 Sum_probs=56.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v 627 (656)
|+|.+...|+||+++.++.+|+++++||..+...+...++.+.+.+.++.. .-.+++++|+++++|.+|
T Consensus 1 ~~l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~v~~v 71 (72)
T cd04878 1 HTLSVLVENEPGVLNRISGLFARRGFNIESLTVGPTEDPGISRITIVVEGDDDVIEQIVKQLNKLVDVLKV 71 (72)
T ss_pred CEEEEEEcCCCcHHHHHHHHHHhCCCCEEEEEeeecCCCCeEEEEEEEECCHHHHHHHHHHHhCCccEEEe
Confidence 578889999999999999999999999999998654346677777777753 233788999999998876
|
ACT_AHAS: N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS). AHAS catalyses the first common step in the biosynthesis of the three branched-chain amino acids. The first step involves the condensation of either pyruvate or 2-ketobutyrate with the two-carbon hydroxyethyl fragment derived from another pyruvate molecule, covalently bound to the coenzyme thiamine diphosphate. Bacterial AHASs generally consist of regulatory and catalytic subunits. The effector (valine) binding sites are proposed to be located in two symmetrically related positions in the interface between a pair of N-terminal ACT domains with the C-terminal domain of IlvH contacting the catalytic dimer. Plants Arabidopsis and Oryza have tandem IlvH subunits; both the first and second ACT domain sequences are present in this CD. Members of |
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.7e-05 Score=73.15 Aligned_cols=93 Identities=24% Similarity=0.355 Sum_probs=68.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCCC--hhHHHHc---CCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAP--ADKARAV---GVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~~--~~~a~~~---g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
++.|+++.|||.|.+|+.++..|...|++ |..++|+.. .+.+... .+... ++.+.+.++|+|+.++|...
T Consensus 9 ~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~- 87 (135)
T PF01488_consen 9 DLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGM- 87 (135)
T ss_dssp TGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTS-
T ss_pred CcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCC-
Confidence 78999999999999999999999999986 999998752 2223333 23333 56667899999999998553
Q ss_pred ccccccHHHHhcCCCCc-EEEEcCCC
Q 006212 297 TSKIFNDETFAKMKKGV-RIVNVARG 321 (656)
Q Consensus 297 T~~li~~~~l~~mK~ga-ilINvaRg 321 (656)
..+.++.+...++.. +++|.+.-
T Consensus 88 --~~i~~~~~~~~~~~~~~v~Dla~P 111 (135)
T PF01488_consen 88 --PIITEEMLKKASKKLRLVIDLAVP 111 (135)
T ss_dssp --TSSTHHHHTTTCHHCSEEEES-SS
T ss_pred --cccCHHHHHHHHhhhhceeccccC
Confidence 267888877655443 89999753
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=6.3e-05 Score=75.42 Aligned_cols=87 Identities=26% Similarity=0.361 Sum_probs=62.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h--HHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D--KARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~--~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
++++|+|.|+||+.+|+++...|++|+.-+++.+. . .++.++. +..+.++..+.||+|++++|... ...+ .++
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~~a-~~~v-~~~ 79 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPFEA-IPDV-LAE 79 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccHHH-HHhH-HHH
Confidence 58999999999999999999999999988665432 1 2233333 34578999999999999999543 2222 233
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
....+. |.++||+.
T Consensus 80 l~~~~~-~KIvID~t 93 (211)
T COG2085 80 LRDALG-GKIVIDAT 93 (211)
T ss_pred HHHHhC-CeEEEecC
Confidence 343344 78888875
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.6e-05 Score=74.10 Aligned_cols=90 Identities=20% Similarity=0.411 Sum_probs=54.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEE-CCCC-ChhHHHH-cC-CeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYA-PADKARA-VG-VELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d~~~-~~~~a~~-~g-~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
...+|||||.|+.|..+++.|+..|+.|.++ +++. +.+.+.. .+ ....+++++++++|++++++|.. ....+. +
T Consensus 9 ~~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va-~ 86 (127)
T PF10727_consen 9 ARLKIGIIGAGRVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVA-E 86 (127)
T ss_dssp ---EEEEECTSCCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHH-H
T ss_pred CccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHH-H
Confidence 3468999999999999999999999999885 5543 2233222 22 23457889999999999999944 222222 2
Q ss_pred HHHhc--CCCCcEEEEcC
Q 006212 304 ETFAK--MKKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~--mK~gailINva 319 (656)
+.-.. .++|.+++-|+
T Consensus 87 ~La~~~~~~~g~iVvHtS 104 (127)
T PF10727_consen 87 QLAQYGAWRPGQIVVHTS 104 (127)
T ss_dssp HHHCC--S-TT-EEEES-
T ss_pred HHHHhccCCCCcEEEECC
Confidence 22222 58999999996
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.80 E-value=4.6e-05 Score=75.18 Aligned_cols=128 Identities=20% Similarity=0.272 Sum_probs=77.8
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH----H-------HcC-------------Cee-cCHHHHhccC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA----R-------AVG-------------VEL-VSFDQALATA 284 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a----~-------~~g-------------~~~-~~l~ell~~a 284 (656)
+|+|||.|.||+.+|..+...|++|..||++.. .+.+ . +.| +.+ .+++++. +|
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~a 79 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DA 79 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TE
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hh
Confidence 699999999999999999999999999998752 1111 1 111 122 3688888 99
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcE
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nv 363 (656)
|+|+=++|...+.+.-+-.+.-+.++++++|...+++= ....|...+.. .++ .|++.|. |+ ...||.+ +
T Consensus 80 dlViEai~E~l~~K~~~~~~l~~~~~~~~ilasnTSsl--~i~~la~~~~~p~R~--ig~Hf~~--P~-~~~~lVE---v 149 (180)
T PF02737_consen 80 DLVIEAIPEDLELKQELFAELDEICPPDTILASNTSSL--SISELAAALSRPERF--IGMHFFN--PP-HLMPLVE---V 149 (180)
T ss_dssp SEEEE-S-SSHHHHHHHHHHHHCCS-TTSEEEE--SSS---HHHHHTTSSTGGGE--EEEEE-S--ST-TT--EEE---E
T ss_pred heehhhccccHHHHHHHHHHHHHHhCCCceEEecCCCC--CHHHHHhccCcCceE--EEEeccc--cc-ccCceEE---E
Confidence 99999999776666555455555678888887665443 34555555543 455 5566663 43 3457775 5
Q ss_pred EEcCCC
Q 006212 364 TVTPHL 369 (656)
Q Consensus 364 ilTPH~ 369 (656)
+-.|+.
T Consensus 150 v~~~~T 155 (180)
T PF02737_consen 150 VPGPKT 155 (180)
T ss_dssp EE-TTS
T ss_pred eCCCCC
Confidence 666653
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00013 Score=76.30 Aligned_cols=101 Identities=24% Similarity=0.329 Sum_probs=77.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCC-h-hHHHHcCCe-ecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP-A-DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~-~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|+||+.++..+...| .+|++.+|+.. . ..+.++|+. ..+.++++.++|+|+|++. |+ .-
T Consensus 2 ~~IgfIG~G~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK--Pq----~~ 75 (266)
T COG0345 2 MKIGFIGAGNMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK--PQ----DL 75 (266)
T ss_pred ceEEEEccCHHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC--hH----hH
Confidence 58999999999999999999877 68999999863 3 356677776 3467889999999999997 42 22
Q ss_pred HHHHhcCC---CCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 303 DETFAKMK---KGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 303 ~~~l~~mK---~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+.+..+| ++.+||.++-| +..+.|.+.+...++
T Consensus 76 ~~vl~~l~~~~~~~lvISiaAG--v~~~~l~~~l~~~~v 112 (266)
T COG0345 76 EEVLSKLKPLTKDKLVISIAAG--VSIETLERLLGGLRV 112 (266)
T ss_pred HHHHHHhhcccCCCEEEEEeCC--CCHHHHHHHcCCCce
Confidence 45566666 68899999866 356667666654444
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00032 Score=76.04 Aligned_cols=141 Identities=22% Similarity=0.262 Sum_probs=87.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--------------------HHHcC-Ceec-CHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--------------------ARAVG-VELV-SFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--------------------a~~~g-~~~~-~l~ell~~aDvV 287 (656)
.+|||||||-||-++|..+...|++|+|||-+...-. +.+.| .+.. +.+ .++.||++
T Consensus 10 ~~I~ViGLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~-~l~~~dv~ 88 (436)
T COG0677 10 ATIGVIGLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPE-ELKECDVF 88 (436)
T ss_pred eEEEEEccccccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChh-hcccCCEE
Confidence 6899999999999999999999999999996542111 11222 1222 333 35599999
Q ss_pred EEccCCCccccc-ccc--------HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEEEEeec---cCCCCCC-
Q 006212 288 SLHMPLNPTTSK-IFN--------DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDV---FTEEPPA- 352 (656)
Q Consensus 288 ~l~~Plt~~T~~-li~--------~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g--~i~gA~lDV---~~~EP~~- 352 (656)
++|+| ||-+.+ --+ +..-..||+|.++|==+....=..+.++.-|.+. .+ ..+-|+ |.+|-..
T Consensus 89 iI~VP-TPl~~~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL-~~~~Df~laysPERv~P 166 (436)
T COG0677 89 IICVP-TPLKKYREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGL-KFGEDFYLAYSPERVLP 166 (436)
T ss_pred EEEec-CCcCCCCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCC-cccceeeEeeCccccCC
Confidence 99999 664442 111 1223348999998877764444455554444332 11 122343 3333211
Q ss_pred --CCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 353 --KDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 353 --~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
....+.++|++ +||.|+++-+
T Consensus 167 G~~~~el~~~~kV-----IgG~tp~~~e 189 (436)
T COG0677 167 GNVLKELVNNPKV-----IGGVTPKCAE 189 (436)
T ss_pred CchhhhhhcCCce-----eecCCHHHHH
Confidence 22356678888 7899887643
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=97.77 E-value=5.6e-05 Score=72.76 Aligned_cols=89 Identities=21% Similarity=0.382 Sum_probs=61.0
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcC--------C------ee-cCHHHHhccCCEEEEccCCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG--------V------EL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g--------~------~~-~~l~ell~~aDvV~l~~Plt 294 (656)
+|+|+|.|+.|.++|..+...|.+|..|.+... .+...+.+ + .. .++++++++||+|++++|..
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs~ 80 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPSQ 80 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-GG
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccHH
Confidence 689999999999999999999999999998741 12111111 1 12 37999999999999999933
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
..+.++ ++....++++..+|++..|
T Consensus 81 -~~~~~~-~~l~~~l~~~~~ii~~~KG 105 (157)
T PF01210_consen 81 -AHREVL-EQLAPYLKKGQIIISATKG 105 (157)
T ss_dssp -GHHHHH-HHHTTTSHTT-EEEETS-S
T ss_pred -HHHHHH-HHHhhccCCCCEEEEecCC
Confidence 233333 3444457889999999876
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.2e-05 Score=72.08 Aligned_cols=82 Identities=21% Similarity=0.303 Sum_probs=58.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.+++||++.|||-+. +|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++. .+++
T Consensus 30 ~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt~~h~~T------------~~l~~~~~~ADIVVsa~G~----~~~i 93 (160)
T PF02882_consen 30 YGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVTICHSKT------------KNLQEITRRADIVVSAVGK----PNLI 93 (160)
T ss_dssp TT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEEEE-TTS------------SSHHHHHTTSSEEEE-SSS----TT-B
T ss_pred cCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEEeccCCC------------CcccceeeeccEEeeeecc----cccc
Confidence 46789999999999995 99999999999999999987653 2478889999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006212 302 NDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~i 323 (656)
..+ .+|+|+++||++.-..
T Consensus 94 ~~~---~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 94 KAD---WIKPGAVVIDVGINYV 112 (160)
T ss_dssp -GG---GS-TTEEEEE--CEEE
T ss_pred ccc---cccCCcEEEecCCccc
Confidence 554 3699999999986543
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.74 E-value=9.5e-05 Score=73.35 Aligned_cols=97 Identities=22% Similarity=0.266 Sum_probs=59.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC---------------------Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG---------------------VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g---------------------~~~-~~l~ell~~aDvV 287 (656)
++|+|||+|.+|..+|..+...|++|++||.+...-.....| ... .+.++.+++||++
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~ 80 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVV 80 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEE
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceE
Confidence 589999999999999999999999999999753211111111 122 2577889999999
Q ss_pred EEccCCCcccc-cccc--------HHHHhcCCCCcEEEEcCCCchhcHH
Q 006212 288 SLHMPLNPTTS-KIFN--------DETFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 288 ~l~~Plt~~T~-~li~--------~~~l~~mK~gailINvaRg~ivde~ 327 (656)
++|+| ||... +..+ +.....++++.++|.-+.-.+=..+
T Consensus 81 ~I~Vp-TP~~~~~~~Dls~v~~a~~~i~~~l~~~~lvV~~STvppGtt~ 128 (185)
T PF03721_consen 81 FICVP-TPSDEDGSPDLSYVESAIESIAPVLRPGDLVVIESTVPPGTTE 128 (185)
T ss_dssp EE-----EBETTTSBETHHHHHHHHHHHHHHCSCEEEEESSSSSTTHHH
T ss_pred EEecC-CCccccCCccHHHHHHHHHHHHHHHhhcceEEEccEEEEeeeh
Confidence 99999 44322 2212 2344458999999999975554444
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=79.50 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=71.4
Q ss_pred HHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|..+|.+|...|++|++||++.. .+...+.|+... +..+++++||+|++|+|....++.++ ......+++++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl-~~L~~~L~~g~ 110 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIA-KNILPHLPENA 110 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHH-HHHHhhCCCCC
Confidence 78999999989999999998753 123456677654 78889999999999999544366666 35667789999
Q ss_pred EEEEcCCCchhcH-HHHHHhHh
Q 006212 314 RIVNVARGGVIDE-EALVRALD 334 (656)
Q Consensus 314 ilINvaRg~ivde-~aL~~aL~ 334 (656)
+|||++.+..... +.+.+.+.
T Consensus 111 IVId~ST~~~~~~s~~l~~~l~ 132 (342)
T PRK12557 111 VICNTCTVSPVVLYYSLEGELR 132 (342)
T ss_pred EEEEecCCCHHHHHHHHHHHhc
Confidence 9999999877654 55655554
|
|
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00015 Score=72.12 Aligned_cols=97 Identities=21% Similarity=0.220 Sum_probs=69.6
Q ss_pred ccccccccccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhH--HHHcCCee---cC----HHHHhccCC
Q 006212 216 KWLRSKYVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADK--ARAVGVEL---VS----FDQALATAD 285 (656)
Q Consensus 216 ~W~~~~~~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~g~~~---~~----l~ell~~aD 285 (656)
-|++....+.++.||++.|||-+. +|+++|..|...|+.|..+|.+..... ..+..-.. .+ +.+.+++||
T Consensus 49 i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVti~~~~~~~~~~~~~~~~hs~t~~~~~~~~l~~~~~~AD 128 (197)
T cd01079 49 IYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVYSVDINGIQVFTRGESIRHEKHHVTDEEAMTLDCLSQSD 128 (197)
T ss_pred CcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEEecCcccccccccccccccccccchhhHHHHHhhhCC
Confidence 344444457899999999999986 699999999999999999974321100 00011111 12 778999999
Q ss_pred EEEEccCCCcccccc-ccHHHHhcCCCCcEEEEcC
Q 006212 286 FISLHMPLNPTTSKI-FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 286 vV~l~~Plt~~T~~l-i~~~~l~~mK~gailINva 319 (656)
+|+.+++. .++ +..+. .|+|+++||+|
T Consensus 129 IVIsAvG~----~~~~i~~d~---ik~GavVIDVG 156 (197)
T cd01079 129 VVITGVPS----PNYKVPTEL---LKDGAICINFA 156 (197)
T ss_pred EEEEccCC----CCCccCHHH---cCCCcEEEEcC
Confidence 99999993 344 66655 48999999998
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=97.71 E-value=7.5e-05 Score=75.76 Aligned_cols=89 Identities=21% Similarity=0.258 Sum_probs=60.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH--------cCC----eecCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--------VGV----ELVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~--------~g~----~~~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+||| .|.||+.+|++|...|.+|.++++.... +.... .|+ ...+..+.++++|+|++|+|..
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~~- 79 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPWD- 79 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCHH-
Confidence 3799997 9999999999999999999999886522 11111 122 2236778899999999999933
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg 321 (656)
....++. +.-..++ +.++|++.-|
T Consensus 80 ~~~~~l~-~l~~~l~-~~vvI~~~ng 103 (219)
T TIGR01915 80 HVLKTLE-SLRDELS-GKLVISPVVP 103 (219)
T ss_pred HHHHHHH-HHHHhcc-CCEEEEeccC
Confidence 2333331 2212243 4799999765
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=3.3e-05 Score=78.13 Aligned_cols=126 Identities=11% Similarity=0.177 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH--hcCCCEEEE-ECCCCChhHHH
Q 006212 192 EHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA--KGLGMNVIA-HDPYAPADKAR 268 (656)
Q Consensus 192 E~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l--k~~G~~Vi~-~d~~~~~~~a~ 268 (656)
+|.+..++...|++. .|. ..++++|||+|.+|+.+++.+ ...|+++.+ +|+........
T Consensus 65 gy~v~~l~~~~~~~l---------~~~---------~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~ 126 (213)
T PRK05472 65 GYNVEELLEFIEKIL---------GLD---------RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTK 126 (213)
T ss_pred CeeHHHHHHHHHHHh---------CCC---------CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECChhhcCCE
Confidence 477788887777664 122 245899999999999999863 357899887 56543111101
Q ss_pred HcCCe---ecCHHHHhcc--CCEEEEccCCCccc---cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 269 AVGVE---LVSFDQALAT--ADFISLHMPLNPTT---SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 269 ~~g~~---~~~l~ell~~--aDvV~l~~Plt~~T---~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
..|+. ..++++++++ .|.|++|+|..... ..+.......-|...++.+|+.+|-+|+.++|..+|..
T Consensus 127 i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~~~~i~~~l~~~Gi~~il~~~p~~~~v~~~~~v~~~~l~~~l~~ 201 (213)
T PRK05472 127 IGGIPVYHIDELEEVVKENDIEIGILTVPAEAAQEVADRLVEAGIKGILNFAPVRLSVPEDVIVRNVDLTVELQT 201 (213)
T ss_pred eCCeEEcCHHHHHHHHHHCCCCEEEEeCCchhHHHHHHHHHHcCCCEEeecCceeecCCCCCEEEEechHHHHHH
Confidence 11222 1257777765 99999999966531 11121222233566678899999999999998887764
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00017 Score=73.93 Aligned_cols=104 Identities=19% Similarity=0.282 Sum_probs=67.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC---CE-EEEECCCC--Chh-HHHHcCCee-cCHHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG---MN-VIAHDPYA--PAD-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G---~~-Vi~~d~~~--~~~-~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+++|||||.|+||+.+++.+...| .+ ++++++.. ..+ .....++.. .+++++++++|+|++|+|. ...+.
T Consensus 3 ~~~kI~iIG~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~ 81 (245)
T PRK07634 3 KKHRILFIGAGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEE 81 (245)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHH
Confidence 3578999999999999999987654 33 77787642 222 223356654 4788999999999999993 22333
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
++. +.-..++ +.+||.++-| ++.+.|.+.+..+
T Consensus 82 v~~-~l~~~~~-~~~vis~~~g--i~~~~l~~~~~~~ 114 (245)
T PRK07634 82 LLA-ELSPLLS-NQLVVTVAAG--IGPSYLEERLPKG 114 (245)
T ss_pred HHH-HHHhhcc-CCEEEEECCC--CCHHHHHHHcCCC
Confidence 332 1111234 5688888755 3555566655543
|
|
| >TIGR00720 sda_mono L-serine dehydratase, iron-sulfur-dependent, single chain form | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.6e-05 Score=82.21 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=86.4
Q ss_pred CceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccc------------hHhHhhccCceEEEEEeec-C-CC
Q 006212 437 GIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN------------ADFTAKQKGLRISEERVVA-D-SS 502 (656)
Q Consensus 437 ~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vN------------A~~iAke~GI~v~~~~~~~-~-~~ 502 (656)
.++++++.++||++ .+.++|++|+|++.||++. ..++++... .+.++.+++|.+.+..... . ..
T Consensus 41 ~~~rv~v~LyGSLA-~TGkGHgTD~Avl~GL~G~-~P~~vd~~~~~~~~~~~~~~~~l~l~~~~~i~f~~~~di~f~~~~ 118 (455)
T TIGR00720 41 QVTRVQVDLYGSLA-LTGKGHLTDIAILMGLAGI-YPNTVDIDTKKGFLHEVLENKVLKLAGQHHVPFDYANDLIFHNKP 118 (455)
T ss_pred CCcEEEEEEEchhh-hcCCCccccHHHHHHhcCC-CCCCcChhhhHHHHHHHHhcCeeecCCCCccccCcccceeeCCCC
Confidence 58999999999999 9999999999999999944 444455553 3344667888876643221 0 11
Q ss_pred CCCCCceEEEEEEecccccceecCCCcE-EEEEEEEEC-CeeEEEEEcceeEEeecCccEEEEEecCCC---CchhhHHh
Q 006212 503 PEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPHLTRVGSFGVDASLEGNLILCRQVDQP---GMIGKVGN 577 (656)
Q Consensus 503 ~~~~~ntv~i~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~rI~~IdGf~V~~~g~~~~Llv~~~D~P---GvIa~V~~ 577 (656)
...|||+++++..+ .++.. .+.++.|+| |.++.- +.+.-+- .. ..+.| -....+..
T Consensus 119 lp~HPNgm~f~a~d---------~~g~~l~~~t~ySIGGGfI~~~--~~~~~~~-~~-------~~~~p~~f~s~~ell~ 179 (455)
T TIGR00720 119 LPLHENGMTITAFN---------SKNEVLYEETYYSVGGGFIVTE--KHFGSEE-DN-------NVSVAYPFKSAKELLE 179 (455)
T ss_pred CCCCCCeeEEEEEe---------CCCCEEEEEEEEEcCCceeeec--ccccccc-cc-------CCCCCcCCCCHHHHHH
Confidence 23699999999983 33333 478899998 555432 1111100 00 01112 23455777
Q ss_pred hhhcCCccccceEee
Q 006212 578 ILGEHNVNVNFMSVG 592 (656)
Q Consensus 578 iL~~~~INI~~m~v~ 592 (656)
+..+++++|..+-+.
T Consensus 180 ~~~~~~~~i~e~v~~ 194 (455)
T TIGR00720 180 LCQKHGKSISEIALL 194 (455)
T ss_pred HHHHhCCCHHHHHHH
Confidence 777888888877553
|
This enzyme is also called serine deaminase and L-serine dehydratase 1. L-serine ammonia-lyase converts serine into pyruvate in the gluconeogenesis pathway from serine. This enzyme is comprised of a single chain in Escherichia coli, Mycobacterium tuberculosis, and several other species, but has separate alpha and beta chains in Bacillus subtilis and related species. The beta and alpha chains are homologous to the N-terminal and C-terminal regions, respectively, but are rather deeply branched in a UPGMA tree. This enzyme requires iron and dithiothreitol for activation in vitro, and is a predicted 4Fe-4S protein. Escherichia coli Pseudomonas aeruginosa have two copies of this protein. |
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00013 Score=78.12 Aligned_cols=92 Identities=24% Similarity=0.295 Sum_probs=66.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC--hhHHHHcCCeecC---HHHHhccCCEEEEccCCCcccccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP--ADKARAVGVELVS---FDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~--~~~a~~~g~~~~~---l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.|++|+|||.|.||+.+++.++..| .+|+++|+... .+.+.+.|....+ +.+.+.++|+|+.|+|... ...+
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~-~~~~ 254 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPH-YAKI 254 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCc-hHHH
Confidence 68999999999999999999999865 68999998753 2455666765443 5677889999999999443 3222
Q ss_pred ccHHHHhcC-CCCcEEEEcCC
Q 006212 301 FNDETFAKM-KKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~m-K~gailINvaR 320 (656)
+ ...+... +++.+++|++-
T Consensus 255 ~-~~~~~~~~~~~~~viDlav 274 (311)
T cd05213 255 V-ERAMKKRSGKPRLIVDLAV 274 (311)
T ss_pred H-HHHHhhCCCCCeEEEEeCC
Confidence 2 2223222 35778888874
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00015 Score=75.89 Aligned_cols=101 Identities=14% Similarity=0.244 Sum_probs=65.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEE-EECCCCCh--hHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAPA--DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi-~~d~~~~~--~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.+|||||+|.||+.+++.+... ++++. ++|++... ..+...+.. +.++++++.++|+|++|+|.. ... +
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~~--~~~---~ 76 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASVN--AVE---E 76 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCChH--HHH---H
Confidence 3799999999999999998864 57754 58887522 222344554 348999999999999999832 221 1
Q ss_pred HHHhcCCCCcEEEEcCCCchhcH---HHHHHhHhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDE---EALVRALDS 335 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde---~aL~~aL~~ 335 (656)
-....|+.|.-++.++-|.+.|. +.|.++.++
T Consensus 77 ~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~ 111 (265)
T PRK13304 77 VVPKSLENGKDVIIMSVGALADKELFLKLYKLAKE 111 (265)
T ss_pred HHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHH
Confidence 12223455555566666666653 345554444
|
|
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00034 Score=66.40 Aligned_cols=81 Identities=23% Similarity=0.311 Sum_probs=67.2
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|+|-+. +|+.+|..|...|+.|..++.+. .++++.+++||+|+.+++.. +++
T Consensus 22 ~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t------------~~l~~~v~~ADIVvsAtg~~----~~i 85 (140)
T cd05212 22 EGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKT------------IQLQSKVHDADVVVVGSPKP----EKV 85 (140)
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecCCC----Ccc
Confidence 47899999999999875 78999999999999999988542 15788899999999999844 457
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
+.+. +|||++++|++...
T Consensus 86 ~~~~---ikpGa~Vidvg~~~ 103 (140)
T cd05212 86 PTEW---IKPGATVINCSPTK 103 (140)
T ss_pred CHHH---cCCCCEEEEcCCCc
Confidence 6655 69999999998543
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00016 Score=77.79 Aligned_cols=85 Identities=18% Similarity=0.299 Sum_probs=63.3
Q ss_pred EEEEecChhHHHHHHHHhc-CCCEEEEECCCCCh---hHHHHcCCee------------------c-CHHHHhccCCEEE
Q 006212 232 LAVMGFGKVGSEVARRAKG-LGMNVIAHDPYAPA---DKARAVGVEL------------------V-SFDQALATADFIS 288 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~-~G~~Vi~~d~~~~~---~~a~~~g~~~------------------~-~l~ell~~aDvV~ 288 (656)
|||+|||+||+.+++.+.. -+|+|++.....+. ..+..+|+.. . ++++++.++|+|+
T Consensus 1 VaInG~GrIGr~varav~~~~d~elVaVnD~~~~~~a~lA~~lgyds~~~~~~~~~~~~~~~l~v~g~~eeLl~~vDiVv 80 (333)
T TIGR01546 1 VGVNGYGTIGKRVADAVTKQDDMKLVGVTKTSPDFEAYRAKELGIPVYAASEEFIPRFEEAGIEVAGTLEDLLEKVDIVV 80 (333)
T ss_pred CEEECCcHHHHHHHHHHhhCCCcEEEEEecCChHHHHHHHHHhCCCEEeecCCcceEeccCceEecCCHHHHhhcCCEEE
Confidence 6999999999999999874 47998885432222 2233333211 1 5889999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.|+| .+.++.+.+.+.+|+++++|+-.-
T Consensus 81 e~Tp---~~~~~~na~~~~~~GakaVl~~~p 108 (333)
T TIGR01546 81 DATP---GGIGAKNKPLYEKAGVKAIFQGGE 108 (333)
T ss_pred ECCC---CCCChhhHHHHHhCCcCEEEECCC
Confidence 9976 457788999999999999888653
|
All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's. |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=76.13 Aligned_cols=79 Identities=18% Similarity=0.283 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|..|..++.+. -++.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvi~avG~p----~~v 216 (285)
T PRK10792 153 YGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVTVCHRFT------------KNLRHHVRNADLLVVAVGKP----GFI 216 (285)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEEEEECCC------------CCHHHHHhhCCEEEEcCCCc----ccc
Confidence 46789999999999999 99999999999999999987542 15888999999999999622 245
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+ .+|+|+++||+|-
T Consensus 217 ~~~---~vk~gavVIDvGi 232 (285)
T PRK10792 217 PGE---WIKPGAIVIDVGI 232 (285)
T ss_pred cHH---HcCCCcEEEEccc
Confidence 553 4699999999983
|
|
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00013 Score=76.09 Aligned_cols=122 Identities=17% Similarity=0.210 Sum_probs=76.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+|||||+|+||+++++.+...+ -+++++|++... .++.. .+..+++.+||+|++|+| ...+..++..
T Consensus 3 ~mkI~iIG~G~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~ 76 (260)
T PTZ00431 3 NIRVGFIGLGKMGSALAYGIENSNIIGKENIYYHTPSKKN-----TPFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE 76 (260)
T ss_pred CCEEEEECccHHHHHHHHHHHhCCCCCcceEEEECCChhc-----CCeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH
Confidence 358999999999999999998655 359999886421 23333 367788899999999998 4445555532
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCC
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHL 369 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~ 369 (656)
....++++.+|.+++--+ .+.+.+.+... .+. .+-++.| -++....++++|.-
T Consensus 77 -i~~~l~~~~iIS~~aGi~---~~~l~~~~~~~~~vv----r~mPn~p-----~~~g~g~t~i~~~~ 130 (260)
T PTZ00431 77 -IKPYLGSKLLISICGGLN---LKTLEEMVGVEAKIV----RVMPNTP-----SLVGQGSLVFCANN 130 (260)
T ss_pred -HHhhccCCEEEEEeCCcc---HHHHHHHcCCCCeEE----EECCCch-----hHhcceeEEEEeCC
Confidence 223455666666655333 44444434332 221 2333332 35666778888753
|
|
| >cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00021 Score=58.14 Aligned_cols=68 Identities=13% Similarity=0.302 Sum_probs=56.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHHhcCCCccEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L~~~~~V~~v~~ 629 (656)
|.+...|+||+++++.++|.++++||.++...... ++.+.+.+.++.. ...+++++|+++++|..++.
T Consensus 3 l~i~~~d~~g~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~L~~~~~v~~v~~ 71 (72)
T cd04874 3 LSIIAEDKPGVLRDLTGVIAEHGGNITYTQQFIER-EGKARIYMELEGVGDIEELVEELRSLPIVREVEI 71 (72)
T ss_pred EEEEeCCCCChHHHHHHHHHhCCCCEEEEEEeccC-CCeEEEEEEEeccccHHHHHHHHhCCCCeEEEEe
Confidence 56678999999999999999999999999886443 5667777888876 44589999999999988764
|
a.), putative amino acid binding protein, Af1403, and related domains. This CD includes the N-terminal ACT domain of the yet uncharacterized, small (~133 a.a.), putative amino acid binding protein, Af1403, from Archaeoglobus fulgidus and other related archeal ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00017 Score=80.54 Aligned_cols=91 Identities=23% Similarity=0.356 Sum_probs=67.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCeec---CHHHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.|++++|+|.|.||+.+++.++..|. +|+++++.... ..+...|.... ++.+.+.++|+|+.|+|.. ..
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~---~~ 255 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAP---HP 255 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCC---Cc
Confidence 4788999999999999999999999997 89999987522 24455554433 4566788999999998733 34
Q ss_pred cccHHHHhcC-----CCCcEEEEcC
Q 006212 300 IFNDETFAKM-----KKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~m-----K~gailINva 319 (656)
++..+.++.+ +++.+++|.+
T Consensus 256 ~i~~~~l~~~~~~~~~~~~vviDla 280 (423)
T PRK00045 256 IIGKGMVERALKARRHRPLLLVDLA 280 (423)
T ss_pred EEcHHHHHHHHhhccCCCeEEEEeC
Confidence 5666666543 2456778875
|
|
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00017 Score=80.27 Aligned_cols=92 Identities=25% Similarity=0.346 Sum_probs=69.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCCh--hHHHHcCCeec---CHHHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.|++++|+|.|.||..+++.|+..| .+|+++|+.... ..+...|.... ++.+.+.++|+|+.|++. +..
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s---~~~ 253 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGA---PHP 253 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCC---CCc
Confidence 478999999999999999999999999 789999987532 24445554333 566788999999999763 345
Q ss_pred cccHHHHhcCC----CCcEEEEcCC
Q 006212 300 IFNDETFAKMK----KGVRIVNVAR 320 (656)
Q Consensus 300 li~~~~l~~mK----~gailINvaR 320 (656)
+++.+.+..+. ...+++|.+.
T Consensus 254 ii~~e~l~~~~~~~~~~~~viDla~ 278 (417)
T TIGR01035 254 IVSKEDVERALRERTRPLFIIDIAV 278 (417)
T ss_pred eEcHHHHHHHHhcCCCCeEEEEeCC
Confidence 67877776542 2357888763
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00013 Score=57.53 Aligned_cols=46 Identities=24% Similarity=0.419 Sum_probs=42.1
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
-+..+|+||.+++++++|+++++||.+|.+.+.. ++.+++.+.+|.
T Consensus 2 ~v~~~d~~G~l~~i~~~l~~~~inI~~~~~~~~~-~~~~~~~~~v~~ 47 (56)
T cd04889 2 SVFVENKPGRLAEVTEILAEAGINIKAISIAETR-GEFGILRLIFSD 47 (56)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEeeEEEEEcc-CCcEEEEEEECC
Confidence 3578999999999999999999999999998775 789999999987
|
Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A |
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00029 Score=74.41 Aligned_cols=107 Identities=18% Similarity=0.169 Sum_probs=72.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCe--------------ecCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE--------------LVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~--------------~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+|+|||.|.||..+|..|...|.+|..|++....+...+.|.. ..+.++....+|+|++|+|. .
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~ 79 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFLVRPKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-Y 79 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEEecHHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-c
Confidence 36999999999999999999889999999982233333444432 12455667899999999993 3
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
++...+ +.....++++.+|+.+.-| +-.++.+.+.+...++.
T Consensus 80 ~~~~~~-~~l~~~~~~~~~ii~~~nG-~~~~~~l~~~~~~~~v~ 121 (305)
T PRK12921 80 QLDAAI-PDLKPLVGEDTVIIPLQNG-IGQLEQLEPYFGRERVL 121 (305)
T ss_pred CHHHHH-HHHHhhcCCCCEEEEeeCC-CChHHHHHHhCCcccEE
Confidence 344433 2233345778888877554 33466676666655544
|
|
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00025 Score=74.78 Aligned_cols=79 Identities=19% Similarity=0.319 Sum_probs=66.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|+.|..++... -++.+..++||+|+.++.. .+++
T Consensus 158 ~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvv~AvG~----p~~i 221 (287)
T PRK14176 158 YGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVSVCHVFT------------DDLKKYTLDADILVVATGV----KHLI 221 (287)
T ss_pred cCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEEEEeccC------------CCHHHHHhhCCEEEEccCC----cccc
Confidence 46799999999999999 99999999999999999987432 1578889999999998862 2456
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+ .+|+|+++||+|-
T Consensus 222 ~~~---~vk~gavVIDvGi 237 (287)
T PRK14176 222 KAD---MVKEGAVIFDVGI 237 (287)
T ss_pred CHH---HcCCCcEEEEecc
Confidence 655 4699999999984
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00017 Score=70.23 Aligned_cols=94 Identities=26% Similarity=0.400 Sum_probs=68.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCe---e--------------------c----CH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVE---L--------------------V----SF 277 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~---~--------------------~----~l 277 (656)
.+...++.|+|.|+.|..-++.++++|++|..+|.+.. .......+.. . . .|
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 96 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNF 96 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHH
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHH
Confidence 56778999999999999999999999999999997752 2233333321 2 1 36
Q ss_pred HHHhccCCEEEEccCC-CccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLHMPL-NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~~Pl-t~~T~~li~~~~l~~mK~gailINva 319 (656)
.+.++.+|+|+.++-. ....-.++.++.++.|||+.+|+|++
T Consensus 97 ~~~i~~~d~vI~~~~~~~~~~P~lvt~~~~~~m~~gsvIvDis 139 (168)
T PF01262_consen 97 AEFIAPADIVIGNGLYWGKRAPRLVTEEMVKSMKPGSVIVDIS 139 (168)
T ss_dssp HHHHHH-SEEEEHHHBTTSS---SBEHHHHHTSSTTEEEEETT
T ss_pred HHHHhhCcEEeeecccCCCCCCEEEEhHHhhccCCCceEEEEE
Confidence 6789999999864432 44566789999999999999999996
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00024 Score=74.89 Aligned_cols=80 Identities=18% Similarity=0.282 Sum_probs=66.6
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-| .+|+.+|..|...|..|..++... -++.+.+++||+|+.+++ ..+++
T Consensus 151 ~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVtv~hs~t------------~~l~~~~~~ADIvV~AvG----~p~~i 214 (285)
T PRK14191 151 YHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVSVCHILT------------KDLSFYTQNADIVCVGVG----KPDLI 214 (285)
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEEEEeCCc------------HHHHHHHHhCCEEEEecC----CCCcC
Confidence 4679999999999999 899999999999999999885432 136788999999999997 33467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+.+ |+|+++||+|-.
T Consensus 215 ~~~~v---k~GavVIDvGi~ 231 (285)
T PRK14191 215 KASMV---KKGAVVVDIGIN 231 (285)
T ss_pred CHHHc---CCCcEEEEeecc
Confidence 76654 999999999843
|
|
| >PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00019 Score=60.91 Aligned_cols=68 Identities=12% Similarity=0.360 Sum_probs=50.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCH-HHHHHHhcCCCccEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQ-DSLKEIGKVPAIEEYT 628 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~-e~l~~L~~~~~V~~v~ 628 (656)
|-+...|+||+++.|++.+++.++||.+++......++.+.+.+.++-. ..- .++++|+++|+|.+|+
T Consensus 9 l~i~~~dr~GlL~dI~~~i~~~~~nI~~i~~~~~~~~~~~~~~l~v~V~d~~~L~~ii~~L~~i~~V~~V~ 79 (80)
T PF13291_consen 9 LRIEAEDRPGLLADITSVISENGVNIRSINARTNKDDGTARITLTVEVKDLEHLNQIIRKLRQIPGVISVE 79 (80)
T ss_dssp EEEEEE--TTHHHHHHHHHHCSSSEEEEEEEEE--ETTEEEEEEEEEESSHHHHHHHHHHHCTSTTEEEEE
T ss_pred EEEEEEcCCCHHHHHHHHHHHCCCCeEEEEeEEeccCCEEEEEEEEEECCHHHHHHHHHHHHCCCCeeEEE
Confidence 4567899999999999999999999999999765446666665554433 222 8899999999998875
|
|
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0002 Score=75.22 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=67.3
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|+|.+ ..|+.+|..+..+|..|..++.+. .++.+.+++||+|+.+++.. +++
T Consensus 146 ~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t------------~~L~~~~~~ADIvI~Avgk~----~lv 209 (279)
T PRK14178 146 YKISIAGKRAVVVGRSIDVGRPMAALLLNADATVTICHSKT------------ENLKAELRQADILVSAAGKA----GFI 209 (279)
T ss_pred cCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeEEEecCh------------hHHHHHHhhCCEEEECCCcc----ccc
Confidence 4679999999999999 899999999999999998876542 24888999999999999722 567
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
.++.+ |+|+++||+|-
T Consensus 210 ~~~~v---k~GavVIDVgi 225 (279)
T PRK14178 210 TPDMV---KPGATVIDVGI 225 (279)
T ss_pred CHHHc---CCCcEEEEeec
Confidence 77764 99999999984
|
|
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00051 Score=72.36 Aligned_cols=107 Identities=15% Similarity=0.156 Sum_probs=71.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee------------cCHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL------------VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~------------~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|+|||.|.||+.+|..|...|.+|..++++. ..+...+.|... .+++++ +.+|+|++++|. .+
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~ 78 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQ 78 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-cc
Confidence 369999999999999999998899999999854 333334445421 245555 899999999994 34
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g 340 (656)
+..++ +.....+.+++.||.+.-| +-.++.+.+.+....+.+
T Consensus 79 ~~~~~-~~l~~~l~~~~~iv~~~nG-~~~~~~l~~~~~~~~i~~ 120 (304)
T PRK06522 79 LPAAL-PSLAPLLGPDTPVLFLQNG-VGHLEELAAYIGPERVLG 120 (304)
T ss_pred HHHHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHhcCcccEEE
Confidence 44443 2233346677888877765 323556666565544443
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0003 Score=74.35 Aligned_cols=80 Identities=19% Similarity=0.277 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. .|+++|..|...|.+|..+++.. .++.+.+++||+|+.+++ .+. ++
T Consensus 153 ~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gatVtv~~~~t------------~~L~~~~~~aDIvI~AtG-~~~---~v 216 (283)
T PRK14192 153 YNIELAGKHAVVVGRSAILGKPMAMMLLNANATVTICHSRT------------QNLPELVKQADIIVGAVG-KPE---LI 216 (283)
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCEEEEEeCCc------------hhHHHHhccCCEEEEccC-CCC---cC
Confidence 46789999999999998 99999999999999999988631 146777899999999997 332 56
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. +|+|++++|++-.
T Consensus 217 ~~~~---lk~gavViDvg~n 233 (283)
T PRK14192 217 KKDW---IKQGAVVVDAGFH 233 (283)
T ss_pred CHHH---cCCCCEEEEEEEe
Confidence 6544 6999999999843
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0017 Score=66.43 Aligned_cols=153 Identities=20% Similarity=0.205 Sum_probs=100.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC---EEEEECCC----CCh---------hHHHHcCC-ee-cCHHHHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPY----APA---------DKARAVGV-EL-VSFDQALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d~~----~~~---------~~a~~~g~-~~-~~l~ell~~aD 285 (656)
+..+.++++.|+|.|.+|..+|..|...|+ +|..+|++ ... ..++..+. .. .++.+.++++|
T Consensus 20 g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~d 99 (226)
T cd05311 20 GKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGAD 99 (226)
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCC
Confidence 457889999999999999999999998897 49999987 221 12233221 11 36878889999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCC-eEEEEeeccCCCCCCCCCccccCCcEE
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGV-VAQAALDVFTEEPPAKDSKLVQHENVT 364 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~-i~gA~lDV~~~EP~~~~~~L~~~~nvi 364 (656)
+|+-++| .++++.+.++.|+++.++.+.+.- ..|.-+.++.+.|. +..-|. +. ...+..|++
T Consensus 100 vlIgaT~-----~G~~~~~~l~~m~~~~ivf~lsnP--~~e~~~~~A~~~ga~i~a~G~-----~~-----~~~Q~nn~~ 162 (226)
T cd05311 100 VFIGVSR-----PGVVKKEMIKKMAKDPIVFALANP--VPEIWPEEAKEAGADIVATGR-----SD-----FPNQVNNVL 162 (226)
T ss_pred EEEeCCC-----CCCCCHHHHHhhCCCCEEEEeCCC--CCcCCHHHHHHcCCcEEEeCC-----CC-----Cccccceee
Confidence 9999887 467888899999999999998832 23433334444443 333331 21 233567888
Q ss_pred EcCCCCCCcHHH-----HHHHHHHHHHHHHHHHc
Q 006212 365 VTPHLGASTKEA-----QEGVAIEIAEAVVGALR 393 (656)
Q Consensus 365 lTPH~g~~T~ea-----~~~~~~~~~~~i~~~l~ 393 (656)
+-|-+|-....+ -++|-..+++.+.++..
T Consensus 163 ~fPg~~~g~~~~~~~~i~~~m~~~aa~~la~~~~ 196 (226)
T cd05311 163 GFPGIFRGALDVRATKITEEMKLAAAEAIADLAE 196 (226)
T ss_pred ecchhhHHHHHcCCcCCCHHHHHHHHHHHHhhCC
Confidence 889876322211 14444555556655544
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00023 Score=81.13 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=67.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHc-CC--ee---cCHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV-GV--EL---VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~-g~--~~---~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.+++|+|||.|.||+.+++.|...|. +|++++++... ..+... +. .+ .++.+.+.++|+|+.|+|.
T Consensus 263 ~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s--- 339 (519)
T PLN00203 263 SHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSS--- 339 (519)
T ss_pred CCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCC---
Confidence 4789999999999999999999999997 79999987522 222333 32 22 2566788999999999863
Q ss_pred ccccccHHHHhcCCC-------CcEEEEcC
Q 006212 297 TSKIFNDETFAKMKK-------GVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~-------gailINva 319 (656)
...++..+.++.+++ ..++||.+
T Consensus 340 ~~pvI~~e~l~~~~~~~~~~~~~~~~IDLA 369 (519)
T PLN00203 340 ETPLFLKEHVEALPPASDTVGGKRLFVDIS 369 (519)
T ss_pred CCCeeCHHHHHHhhhcccccCCCeEEEEeC
Confidence 355778888877643 24788886
|
|
| >PRK08577 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.001 Score=62.59 Aligned_cols=76 Identities=17% Similarity=0.277 Sum_probs=61.3
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccE--EEEEEeCCC-C-CHHHHHHHhcCCCccEEEEEeec
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHG--IMAIGVDEE-P-NQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~a--l~~i~~D~~-~-~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
.+.|-+...|+||+++.|++.|+++++||.+++......++.+ .+.+++++. . -.+++++|+++++|.+++++.++
T Consensus 56 ~~~I~V~~~Dr~GvLa~I~~~l~~~~inI~~i~~~~~~~~~~~~i~l~vev~~~~~~l~~l~~~L~~l~~V~~V~~~~~~ 135 (136)
T PRK08577 56 LVEIELVVEDRPGVLAKITGLLAEHGVDILATECEELKRGELAECVIIVDLSKSDIDLEELEEELKKLEEVKEVEIRQIE 135 (136)
T ss_pred EEEEEEEEcCCCCHHHHHHHHHHHCCCCEEEEEEEEecCCCEEEEEEEEEeCCchhhHHHHHHHHHcCCCEEEEEEEEcc
Confidence 4567778999999999999999999999999998655445544 444566654 2 34899999999999999998875
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0034 Score=71.02 Aligned_cols=132 Identities=18% Similarity=0.184 Sum_probs=79.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCChhHHHHc------------------C--Ceec-CHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPADKARAV------------------G--VELV-SFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~~~a~~~------------------g--~~~~-~l~ell~~aDv 286 (656)
++|+|||+|.+|..+|..+... |++|++||.+...-..... + ..+. ++++.+++||+
T Consensus 2 m~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~adv 81 (473)
T PLN02353 2 VKICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADI 81 (473)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCE
Confidence 5799999999999999999855 6999999965421111110 1 1222 56778899999
Q ss_pred EEEccCCCcccc------------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee---ccCCC
Q 006212 287 ISLHMPLNPTTS------------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEE 349 (656)
Q Consensus 287 V~l~~Plt~~T~------------~li~--~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD---V~~~E 349 (656)
+++|+| ||... ++.. +..-..++++.++|.-+.-.+=-.+.+.+-+.+.. .| .| +|-+|
T Consensus 82 i~I~V~-TP~~~~g~~~~~~~Dls~v~~a~~~i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~-~g--~~f~v~~~PE 157 (473)
T PLN02353 82 VFVSVN-TPTKTRGLGAGKAADLTYWESAARMIADVSKSDKIVVEKSTVPVKTAEAIEKILTHNS-KG--INFQILSNPE 157 (473)
T ss_pred EEEEeC-CCCCCCCCcCCCCCcHHHHHHHHHHHHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhC-CC--CCeEEEECCC
Confidence 999998 44321 1111 22344579999999887644433445555554411 01 22 23444
Q ss_pred CCCC---CCccccCCcEEE
Q 006212 350 PPAK---DSKLVQHENVTV 365 (656)
Q Consensus 350 P~~~---~~~L~~~~nvil 365 (656)
=+.. -..++..|++|+
T Consensus 158 rl~~G~a~~d~~~p~riVi 176 (473)
T PLN02353 158 FLAEGTAIEDLFKPDRVLI 176 (473)
T ss_pred ccCCCCcccccCCCCEEEE
Confidence 3322 234666677753
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00043 Score=72.76 Aligned_cols=79 Identities=15% Similarity=0.289 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+ .+|+.+|..|...|..|..++.+. -++.+.+++||+|+.++. ..+++
T Consensus 151 ~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVti~hs~T------------~~l~~~~~~ADIvV~AvG----kp~~i 214 (281)
T PRK14183 151 YEIDVKGKDVCVVGASNIVGKPMAALLLNANATVDICHIFT------------KDLKAHTKKADIVIVGVG----KPNLI 214 (281)
T ss_pred cCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------cCHHHHHhhCCEEEEecC----ccccc
Confidence 4679999999999999 799999999998899999876432 147788999999999997 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 215 ~~~~---vk~gavvIDvGi 230 (281)
T PRK14183 215 TEDM---VKEGAIVIDIGI 230 (281)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 6665 489999999983
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00062 Score=71.69 Aligned_cols=80 Identities=23% Similarity=0.327 Sum_probs=66.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... .++.+.+++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----~~~i 214 (284)
T PRK14170 151 TGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVTIAHSRT------------KDLPQVAKEADILVVATGL----AKFV 214 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 47899999999999986 69999999999999999886432 2478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+. .|+|+++||+|--
T Consensus 215 ~~~~---vk~GavVIDvGin 231 (284)
T PRK14170 215 KKDY---IKPGAIVIDVGMD 231 (284)
T ss_pred CHHH---cCCCCEEEEccCc
Confidence 7665 4899999999844
|
|
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00074 Score=71.19 Aligned_cols=82 Identities=17% Similarity=0.276 Sum_probs=67.7
Q ss_pred ccccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccc
Q 006212 222 YVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+.++.||++.|||-+. +|+.+|..|...|..|..++... .++.+.+++||+|+.+++ ..++
T Consensus 151 ~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt~chs~t------------~~l~~~~~~ADIvI~AvG----~p~~ 214 (284)
T PRK14190 151 EYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVTYCHSKT------------KNLAELTKQADILIVAVG----KPKL 214 (284)
T ss_pred HcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----CCCc
Confidence 346799999999999875 79999999999999999886431 258888999999999997 2347
Q ss_pred ccHHHHhcCCCCcEEEEcCCCc
Q 006212 301 FNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ 322 (656)
++.+.+ |+|+++||+|.-.
T Consensus 215 i~~~~i---k~gavVIDvGi~~ 233 (284)
T PRK14190 215 ITADMV---KEGAVVIDVGVNR 233 (284)
T ss_pred CCHHHc---CCCCEEEEeeccc
Confidence 877765 8999999998544
|
|
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0035 Score=67.02 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=72.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--------------cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|||.|.||..+|.+|...|.+|..+.+.. .+.....|... .+..+.+..+|+|++|+|..
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~- 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD-YEAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT- 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC-HHHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-
Confidence 589999999999999999999999999887754 33333334321 11223467899999999944
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
++...+ ......+++++.++...-| +-.++.+.+.+...++.++
T Consensus 84 ~~~~~~-~~l~~~~~~~~~iv~lqNG-~~~~e~l~~~~~~~~v~~g 127 (313)
T PRK06249 84 ANALLA-PLIPQVAAPDAKVLLLQNG-LGVEEQLREILPAEHLLGG 127 (313)
T ss_pred ChHhHH-HHHhhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEEE
Confidence 344333 2233346778888877655 3356777777766665553
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00066 Score=71.97 Aligned_cols=81 Identities=19% Similarity=0.219 Sum_probs=66.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..+.... -++.+.+++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVtv~hs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (297)
T PRK14186 152 QQIDIAGKKAVVVGRSILVGKPLALMLLAANATVTIAHSRT------------QDLASITREADILVAAAGR----PNLI 215 (297)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47799999999999886 79999999999999999886432 1578889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+. .|+|+++||+|--.
T Consensus 216 ~~~~---ik~gavVIDvGin~ 233 (297)
T PRK14186 216 GAEM---VKPGAVVVDVGIHR 233 (297)
T ss_pred CHHH---cCCCCEEEEecccc
Confidence 7665 48999999998443
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0015 Score=77.50 Aligned_cols=128 Identities=20% Similarity=0.266 Sum_probs=85.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~~ 283 (656)
++|+|||.|.||..||..+...|++|..||+... .+.+ .+.| +... ++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFER 392 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5899999999999999999988999999998752 1111 1111 1222 45 44799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|-..+.+.-+-.+.-..++++++|....++= ....|.+.+.. .++ .+++.|. |+ ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasNTSsl--~i~~la~~~~~p~r~--~g~Hff~--P~-~~~~lVE--- 462 (715)
T PRK11730 393 VDVVVEAVVENPKVKAAVLAEVEQKVREDTILASNTSTI--SISLLAKALKRPENF--CGMHFFN--PV-HRMPLVE--- 462 (715)
T ss_pred CCEEEecccCcHHHHHHHHHHHHhhCCCCcEEEEcCCCC--CHHHHHhhcCCCccE--EEEecCC--cc-cccceEE---
Confidence 999999999888777766566666689998886655443 34445555543 355 5666653 32 2346664
Q ss_pred EEEcCC
Q 006212 363 VTVTPH 368 (656)
Q Consensus 363 vilTPH 368 (656)
||-.||
T Consensus 463 vv~g~~ 468 (715)
T PRK11730 463 VIRGEK 468 (715)
T ss_pred eeCCCC
Confidence 555554
|
|
| >PRK13562 acetolactate synthase 1 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00075 Score=58.21 Aligned_cols=75 Identities=12% Similarity=0.163 Sum_probs=61.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC-CC--CCHHHHHHHhcCCCccEEEEEeec
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD-EE--PNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D-~~--~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
++|-+...|+||++++|++++...|+||..+.++..+..+-.=|.|.++ .. .=+.+.++|.++..|.+|.-++|.
T Consensus 3 ~~isvlVeN~~GVL~Rit~lFsRRg~NI~SLtvg~Te~~~iSRmtivv~~~d~~~ieqI~kQL~KlidVikV~~~~~~ 80 (84)
T PRK13562 3 RILKLQVADQVSTLNRITSAFVRLQYNIDTLHVTHSEQPGISNMEIQVDIQDDTSLHILIKKLKQQINVLTVECYDLV 80 (84)
T ss_pred EEEEEEEECCCCHHHHHHHHHhccCcCeeeEEecccCCCCceEEEEEEeCCCHHHHHHHHHHHhCCccEEEEEEeecc
Confidence 5677788899999999999999999999999999877666666666664 22 224788889999999999888773
|
|
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00061 Score=71.76 Aligned_cols=96 Identities=20% Similarity=0.298 Sum_probs=62.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCCh--hHHHHcC----Cee-cCHHHHhccCCEEEEccCCCc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARAVG----VEL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~--~~a~~~g----~~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
+..+.+|++.|+|.|.+|+.++..|...| .+|.+++++... ..+...+ +.+ .++.+.+.++|+|+.++|...
T Consensus 118 ~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~ 197 (278)
T PRK00258 118 GVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGM 197 (278)
T ss_pred CCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCC
Confidence 34678999999999999999999999999 799999987522 1222222 122 234567789999999999653
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
....-.....+..++++.+++|+.
T Consensus 198 ~~~~~~~~~~~~~l~~~~~v~Div 221 (278)
T PRK00258 198 SGELPLPPLPLSLLRPGTIVYDMI 221 (278)
T ss_pred CCCCCCCCCCHHHcCCCCEEEEee
Confidence 211000111123345666666664
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00076 Score=71.02 Aligned_cols=79 Identities=16% Similarity=0.302 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.+++. .+++
T Consensus 150 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVtichs~T------------~~l~~~~~~ADIvI~AvG~----p~~i 213 (282)
T PRK14169 150 YDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVTIAHSKT------------RNLKQLTKEADILVVAVGV----PHFI 213 (282)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEECCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47799999999999986 79999999999999999886432 1478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
+.+. +|+|+++||+|-
T Consensus 214 ~~~~---vk~GavVIDvGi 229 (282)
T PRK14169 214 GADA---VKPGAVVIDVGI 229 (282)
T ss_pred CHHH---cCCCcEEEEeec
Confidence 7665 599999999984
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.002 Score=76.44 Aligned_cols=128 Identities=19% Similarity=0.260 Sum_probs=85.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|..||+... .+.+ .+.| +.. .++ +.+++
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~ 392 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDN 392 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcC
Confidence 5799999999999999999988999999998752 1111 1111 112 244 45799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|-..+.+.-+-.+.-+.++++++|-...++= +..++...++. .++ .|++.|. |+ ..-||.|
T Consensus 393 aDlViEav~E~l~~K~~vf~~l~~~~~~~~ilasnTS~l--~i~~ia~~~~~p~r~--ig~Hff~--P~-~~~~lvE--- 462 (714)
T TIGR02437 393 VDIVVEAVVENPKVKAAVLAEVEQHVREDAILASNTSTI--SISLLAKALKRPENF--CGMHFFN--PV-HRMPLVE--- 462 (714)
T ss_pred CCEEEEcCcccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCcccE--EEEecCC--Cc-ccCceEe---
Confidence 999999999887776655555556689998886654443 34455555543 455 5667663 32 2346765
Q ss_pred EEEcCC
Q 006212 363 VTVTPH 368 (656)
Q Consensus 363 vilTPH 368 (656)
||-+++
T Consensus 463 vv~g~~ 468 (714)
T TIGR02437 463 VIRGEK 468 (714)
T ss_pred ecCCCC
Confidence 554444
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00081 Score=70.86 Aligned_cols=79 Identities=15% Similarity=0.262 Sum_probs=66.0
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.+++ ..+++
T Consensus 153 y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt~chs~T------------~~l~~~~~~ADIvIsAvG----k~~~i 216 (284)
T PRK14177 153 YGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVTLCHSKT------------QNLPSIVRQADIIVGAVG----KPEFI 216 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEeCC----CcCcc
Confidence 46799999999999985 79999999999999999987542 157888999999999998 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 217 ~~~~---ik~gavVIDvGi 232 (284)
T PRK14177 217 KADW---ISEGAVLLDAGY 232 (284)
T ss_pred CHHH---cCCCCEEEEecC
Confidence 7655 489999999983
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00081 Score=70.82 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=65.7
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++.+. -++.+..++||+|+.++.. .+++
T Consensus 151 y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt~chs~T------------~nl~~~~~~ADIvIsAvGk----p~~i 214 (282)
T PRK14166 151 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 47799999999999986 79999999998899999887542 2488889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 215 ~~~~---vk~GavVIDvG 229 (282)
T PRK14166 215 RSDM---VKEGVIVVDVG 229 (282)
T ss_pred CHHH---cCCCCEEEEec
Confidence 7665 48999999998
|
|
| >cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00061 Score=55.74 Aligned_cols=58 Identities=21% Similarity=0.369 Sum_probs=46.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
-+.+..+|+||.+++|+.+|+++|+||.+|.+....+ .+++++.+|. ++.+.+.|++.
T Consensus 3 ri~v~v~d~pG~La~v~~~l~~~~inI~~i~~~~~~~--~~~~rl~~~~--~~~~~~~L~~~ 60 (66)
T cd04908 3 QLSVFLENKPGRLAAVTEILSEAGINIRALSIADTSE--FGILRLIVSD--PDKAKEALKEA 60 (66)
T ss_pred EEEEEEcCCCChHHHHHHHHHHCCCCEEEEEEEecCC--CCEEEEEECC--HHHHHHHHHHC
Confidence 4567899999999999999999999999999876543 5888888855 35677777653
|
Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains. |
| >cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0011 Score=55.26 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=54.2
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCC-C-HHHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEP-N-QDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~-~-~e~l~~L~~~~~V~~v~~v 630 (656)
.|.+...|+||.++.|.+.|+++++||..+..... .++.+-+.+.++ +.. . .+++++|+++|+|.+|+++
T Consensus 2 ~l~i~~~d~~g~l~~I~~~la~~~inI~~i~~~~~-~~~~~~i~~~v~v~~~~~~l~~l~~~L~~i~~V~~v~~~ 75 (76)
T cd04888 2 TLSLLLEHRPGVLSKVLNTIAQVRGNVLTINQNIP-IHGRANVTISIDTSTMNGDIDELLEELREIDGVEKVELV 75 (76)
T ss_pred EEEEEecCCCchHHHHHHHHHHcCCCEEEEEeCCC-CCCeEEEEEEEEcCchHHHHHHHHHHHhcCCCeEEEEEe
Confidence 35678899999999999999999999999987432 234555555554 332 1 3899999999999999875
|
a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and related domains. This CD includes the C-terminal ACT domain of a small (~147 a.a.) putative phenylalanine biosynthetic pathway protein described in Bacillus subtilis (BS) PheB (PheB-BS) and other related ACT domains. In B. subtilis, the upstream gene of pheB, pheA encodes prephenate dehydratase (PDT). The presumed product of the pheB gene is chorismate mutase (CM). The deduced product of the B. subtilis pheB gene, however, has no significant homology to the CM portion of the bifunctional CM-PDT of Escherichia coli. The presence of an ACT domain lends support to the prediction that these proteins function as a phenylalanine-binding regulatory protein. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.0006 Score=54.81 Aligned_cols=59 Identities=14% Similarity=0.314 Sum_probs=48.7
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
+-+..+|+||.++++.++|+++|+||.++........+.+...+.++. .+.+++.|++.
T Consensus 2 i~v~~~d~pG~L~~i~~~l~~~~~nI~~i~~~~~~~~~~~~v~~~ve~--~~~~~~~L~~~ 60 (65)
T cd04882 2 LAVEVPDKPGGLHEILQILSEEGINIEYMYAFVEKKGGKALLIFRTED--IEKAIEVLQER 60 (65)
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCChhheEEEccCCCCeEEEEEEeCC--HHHHHHHHHHC
Confidence 346789999999999999999999999998866554567888888887 56788887763
|
Included in this CD is the C-terminal ACT domain of a novel protein composed of just two ACT domains, as seen in the yet uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related proteins. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00094 Score=70.50 Aligned_cols=81 Identities=20% Similarity=0.293 Sum_probs=66.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.++. . .+++
T Consensus 149 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVtichs~T------------~~l~~~~~~ADIvIsAvG-k---p~~i 212 (287)
T PRK14173 149 YGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVTLAHSKT------------QDLPAVTRRADVLVVAVG-R---PHLI 212 (287)
T ss_pred cCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecC-C---cCcc
Confidence 46799999999999875 79999999999999999876442 147888999999999998 2 3567
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+.+ |+|+++||+|--.
T Consensus 213 ~~~~v---k~GavVIDVGin~ 230 (287)
T PRK14173 213 TPEMV---RPGAVVVDVGINR 230 (287)
T ss_pred CHHHc---CCCCEEEEccCcc
Confidence 76654 9999999998544
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00094 Score=70.69 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=66.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++.+.+++||+|+.+++. .+++
T Consensus 154 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt~chs~T------------~~l~~~~~~ADIvVsAvGk----p~~i 217 (294)
T PRK14187 154 ITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVTTVHSAT------------RDLADYCSKADILVAAVGI----PNFV 217 (294)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 46789999999999986 79999999999999999887542 2478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+.+ |+|+++||+|-
T Consensus 218 ~~~~i---k~gaiVIDVGi 233 (294)
T PRK14187 218 KYSWI---KKGAIVIDVGI 233 (294)
T ss_pred CHHHc---CCCCEEEEecc
Confidence 76654 89999999984
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00092 Score=60.21 Aligned_cols=79 Identities=24% Similarity=0.304 Sum_probs=57.7
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHH----cCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcE
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARA----VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~----~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gai 314 (656)
-+..+++.|+..|++|.+|||+........ .+++.. ++++.++.+|+|+++++ .++-..+--......|+++.+
T Consensus 18 p~~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~-h~~f~~l~~~~~~~~~~~~~~ 96 (106)
T PF03720_consen 18 PALELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATD-HDEFRELDWEEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS---GGGGCCGHHHHHHHSCSSEE
T ss_pred HHHHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEec-CHHHhccCHHHHHHhcCCCCE
Confidence 456789999999999999999986655555 467665 79999999999999998 444444333445566889999
Q ss_pred EEEcC
Q 006212 315 IVNVA 319 (656)
Q Consensus 315 lINva 319 (656)
|+|+-
T Consensus 97 iiD~~ 101 (106)
T PF03720_consen 97 IIDGR 101 (106)
T ss_dssp EEESS
T ss_pred EEECc
Confidence 99983
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00099 Score=70.66 Aligned_cols=79 Identities=18% Similarity=0.251 Sum_probs=66.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++++.+++||+|+.++.. .+++
T Consensus 161 ~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVtvchs~T------------~nl~~~~~~ADIvv~AvGk----~~~i 224 (299)
T PLN02516 161 SGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVTVVHSRT------------PDPESIVREADIVIAAAGQ----AMMI 224 (299)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999986 69999999999999999986532 1478889999999999973 3677
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 225 ~~~~---vk~gavVIDvGi 240 (299)
T PLN02516 225 KGDW---IKPGAAVIDVGT 240 (299)
T ss_pred CHHH---cCCCCEEEEeec
Confidence 7766 489999999984
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.00097 Score=70.24 Aligned_cols=79 Identities=16% Similarity=0.299 Sum_probs=65.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..++... -++.+..++||+|+.+++. .+++
T Consensus 152 y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt~chs~T------------~dl~~~~k~ADIvIsAvGk----p~~i 215 (282)
T PRK14180 152 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 215 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEEcCCC------------CCHHHHhhhcCEEEEccCC----cCcC
Confidence 47799999999999885 79999999999999999886542 1577889999999999982 3457
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 216 ~~~~---vk~gavVIDvGi 231 (282)
T PRK14180 216 TADM---VKEGAVVIDVGI 231 (282)
T ss_pred CHHH---cCCCcEEEEecc
Confidence 7655 589999999983
|
|
| >cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0008 Score=55.48 Aligned_cols=62 Identities=18% Similarity=0.315 Sum_probs=52.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
.+-+..+|+||.++++..+|+++++||..+...+....+.+.+.+.++....+++.+.|++.
T Consensus 3 ~~~v~~~d~pG~l~~i~~~l~~~~inI~~i~~~~~~~~~~~~v~i~v~~~~~~~~~~~L~~~ 64 (72)
T cd04883 3 QIEVRVPDRPGQLADIAAIFKDRGVNIVSVLVYPSKEEDNKILVFRVQTMNPRPIIEDLRRA 64 (72)
T ss_pred EEEEEECCCCCHHHHHHHHHHHcCCCEEEEEEeccCCCCeEEEEEEEecCCHHHHHHHHHHC
Confidence 35567899999999999999999999999988776667788899999876666888888874
|
This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=69.79 Aligned_cols=78 Identities=21% Similarity=0.361 Sum_probs=65.5
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... -++.+..++||+|+.+++. .+++
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt~chs~T------------~~l~~~~~~ADIvIsAvGk----p~~i 215 (278)
T PRK14172 152 LNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVTICHSKT------------KNLKEVCKKADILVVAIGR----PKFI 215 (278)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEcCCC----cCcc
Confidence 46799999999999875 79999999999999999887432 1578889999999999983 3467
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 216 ~~~~---ik~gavVIDvG 230 (278)
T PRK14172 216 DEEY---VKEGAIVIDVG 230 (278)
T ss_pred CHHH---cCCCcEEEEee
Confidence 7665 59999999997
|
|
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0021 Score=69.58 Aligned_cols=97 Identities=24% Similarity=0.369 Sum_probs=70.3
Q ss_pred cccccCCCEEEEEec-ChhHHHHHHHHh-cCC-CEEEEECCCCC-h-hHHHHcC-CeecCHHHHhccCCEEEEccCCCcc
Q 006212 223 VGVSLVGKTLAVMGF-GKVGSEVARRAK-GLG-MNVIAHDPYAP-A-DKARAVG-VELVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 223 ~g~~l~gktvGIIGl-G~IG~~vA~~lk-~~G-~~Vi~~d~~~~-~-~~a~~~g-~~~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.++.||++.|+|. |.||+.+++.|. ..| .+++.+++... . ..+.+.+ ....++++.+.++|+|+.++-..
T Consensus 149 lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~-- 226 (340)
T PRK14982 149 LGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMP-- 226 (340)
T ss_pred hccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCC--
Confidence 456799999999998 899999999997 456 58888887642 2 1222332 23457889999999998766422
Q ss_pred ccc-cccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 297 TSK-IFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 297 T~~-li~~~~l~~mK~gailINvaRg~ivd 325 (656)
.. .++.+. ++++++++|.|+-.=||
T Consensus 227 -~~~~I~~~~---l~~~~~viDiAvPRDVd 252 (340)
T PRK14982 227 -KGVEIDPET---LKKPCLMIDGGYPKNLD 252 (340)
T ss_pred -cCCcCCHHH---hCCCeEEEEecCCCCCC
Confidence 23 366654 58999999999865444
|
|
| >PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.001 Score=58.74 Aligned_cols=79 Identities=10% Similarity=0.132 Sum_probs=61.9
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC-CCCHHHHHHHhcCCCccEEEEEeecc
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-EPNQDSLKEIGKVPAIEEYTLLHVSY 634 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~-~~~~e~l~~L~~~~~V~~v~~v~l~~ 634 (656)
...++|-+...|+||++++|+.+++..|+||..+.++..+..+.+=|.|.+.+ ..=+.+.++|.++..|.+|..+.-+.
T Consensus 6 ~~~~tisvlv~N~pGVL~RIaglFsRRgyNIeSLtvg~te~~~iSRmtivv~~~~~i~Qi~kQL~KLidVikV~~l~~~~ 85 (96)
T PRK08178 6 HDNVILELTVRNHPGVMSHVCGLFARRAFNVEGILCLPIQDGDKSRIWLLVNDDQRLEQMISQIEKLEDVLKVRRNQSDP 85 (96)
T ss_pred CCCEEEEEEEECCcCHHHHHHHHHhcCCcCeeeEEEeecCCCCceEEEEEEcCchHHHHHHHHHhCCcCEEEEEECCCch
Confidence 34678888889999999999999999999999999998776665555555543 22337788888898988888776444
|
|
| >cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00091 Score=55.20 Aligned_cols=70 Identities=20% Similarity=0.287 Sum_probs=52.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC---CCHHHHHHHhcCCCccEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~---~~~e~l~~L~~~~~V~~v~~ 629 (656)
-|-+...|+||.++.+++.|+++++||.+|.......++.+.+.+.++.. .-++++++|+++++|.++..
T Consensus 2 yl~i~~~d~~g~l~~i~~~l~~~~i~I~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~i~~L~~~~~V~~~~~ 74 (79)
T cd04881 2 YLRLTVKDKPGVLAKITGILAEHGISIESVIQKEADGGETAPVVIVTHETSEAALNAALAEIEALDAVQGVPS 74 (79)
T ss_pred EEEEEeCCCCcHHHHHHHHHHHcCCCeEEEEEcccCCCCceeEEEEEccCCHHHHHHHHHHHHcCccccCCce
Confidence 35567789999999999999999999999987543333667666655433 22368899999999877543
|
The ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) encoded by the hom gene of Bacillus subtilis and other related sequences. HSDH reduces aspartate semi-aldehyde to the amino acid homoserine, one that is required for the biosynthesis of Met, Thr, and Ile from Asp. Neither the enzyme nor the aspartate pathway is found in the animal kingdom. This mostly bacterial HSDH group has a C-terminal ACT domain and is believed to be involved in enzyme regulation. A C-terminal deletion in the Corynebacterium glutamicum HSDH abolished allosteric inhibition by L-threonine. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0012 Score=71.27 Aligned_cols=86 Identities=14% Similarity=0.171 Sum_probs=63.6
Q ss_pred CCEEEEEecChhHHHHHHHHhc-C-CCEEEEECCCCCh-hH----HHHcCCe---ecCHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYAPA-DK----ARAVGVE---LVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~-G~~Vi~~d~~~~~-~~----a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-+++||||.|.+|+..++.+.. + .-+|.+||++... +. ..+.|+. ..+.++++++||+|++|+|.. .
T Consensus 128 ~~~lgiiG~G~qA~~~l~al~~~~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~ 204 (325)
T TIGR02371 128 SSVLGIIGAGRQAWTQLEALSRVFDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---K 204 (325)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---C
Confidence 4789999999999998777653 2 4689999998632 21 1234532 348999999999999999843 4
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++..+. +|||+.+..+|.
T Consensus 205 P~~~~~~---l~~g~~v~~vGs 223 (325)
T TIGR02371 205 PVVKADW---VSEGTHINAIGA 223 (325)
T ss_pred cEecHHH---cCCCCEEEecCC
Confidence 5565543 599999999874
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0027 Score=75.33 Aligned_cols=129 Identities=14% Similarity=0.141 Sum_probs=84.4
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~ 282 (656)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| +... ++ +.++
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 383 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFK 383 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhc
Confidence 58999999999999999887 57999999998742 1111 1111 1222 45 4679
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+=++|...+.+.-+-.+.-..++++++|....++= ....+.+.++. .++ .+++.|. |+ ..-||.|
T Consensus 384 ~adlViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--~g~Hffn--P~-~~~~lVE-- 454 (699)
T TIGR02440 384 DVDIVIEAVFEDLALKHQMVKDIEQECAAHTIFASNTSSL--PIGQIAAAASRPENV--IGLHYFS--PV-EKMPLVE-- 454 (699)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhCCCCcEEEeCCCCC--CHHHHHHhcCCcccE--EEEecCC--cc-ccCceEE--
Confidence 9999999999887777665555556689988876554443 33444445543 455 5666653 32 2346665
Q ss_pred cEEEcCCC
Q 006212 362 NVTVTPHL 369 (656)
Q Consensus 362 nvilTPH~ 369 (656)
||-+|+.
T Consensus 455 -vv~g~~T 461 (699)
T TIGR02440 455 -VIPHAGT 461 (699)
T ss_pred -EeCCCCC
Confidence 5555553
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0011 Score=69.77 Aligned_cols=80 Identities=18% Similarity=0.218 Sum_probs=66.3
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+++|..|...|..|..++.+. -++.+..++||+|+.+++. .+++
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVtichs~T------------~nl~~~~~~ADIvI~AvGk----~~~i 214 (282)
T PRK14182 151 ARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVTIAHSRT------------ADLAGEVGRADILVAAIGK----AELV 214 (282)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEecCC----cCcc
Confidence 46789999999999986 79999999998899999886542 1477889999999999982 4567
Q ss_pred cHHHHhcCCCCcEEEEcCCC
Q 006212 302 NDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg 321 (656)
..+.+ |+|+++||+|-.
T Consensus 215 ~~~~i---k~gaiVIDvGin 231 (282)
T PRK14182 215 KGAWV---KEGAVVIDVGMN 231 (282)
T ss_pred CHHHc---CCCCEEEEeece
Confidence 76654 899999999843
|
|
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0021 Score=65.92 Aligned_cols=34 Identities=41% Similarity=0.672 Sum_probs=31.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~ 258 (656)
.++.|+++.|.|+|.+|+.+|+.|..+|++|++.
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v 60 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAV 60 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEE
Confidence 5789999999999999999999999999999953
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0012 Score=69.70 Aligned_cols=80 Identities=21% Similarity=0.299 Sum_probs=65.5
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.+++.
T Consensus 147 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVtvchs~T------------~~l~~~~~~ADIvV~AvG~---- 210 (287)
T PRK14181 147 YEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVTLLHSQS------------ENLTEILKTADIIIAAIGV---- 210 (287)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46799999999999986 799999999877 78999876432 1588889999999999982
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg 321 (656)
.+++..+. .|+|+++||+|--
T Consensus 211 p~~i~~~~---ik~GavVIDvGin 231 (287)
T PRK14181 211 PLFIKEEM---IAEKAVIVDVGTS 231 (287)
T ss_pred cCccCHHH---cCCCCEEEEeccc
Confidence 35677665 4899999999843
|
|
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0025 Score=75.96 Aligned_cols=129 Identities=16% Similarity=0.233 Sum_probs=86.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..+...|++|+.||+... .+.+ .+.| +.. .+++ .+++
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~ 414 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKN 414 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-Hhcc
Confidence 5899999999999999999988999999998742 1111 1111 122 2454 5799
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHEN 362 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~n 362 (656)
||+|+=++|...+.+.-+-.+.=+.++++++|....++ ++..++...++. .++ .|++.|. |+ ..-||.|
T Consensus 415 aDlViEAv~E~l~~K~~vf~~l~~~~~~~~ilasNTSs--l~i~~la~~~~~p~r~--ig~Hff~--P~-~~m~LvE--- 484 (737)
T TIGR02441 415 ADMVIEAVFEDLSLKHKVIKEVEAVVPPHCIIASNTSA--LPIKDIAAVSSRPEKV--IGMHYFS--PV-DKMQLLE--- 484 (737)
T ss_pred CCeehhhccccHHHHHHHHHHHHhhCCCCcEEEEcCCC--CCHHHHHhhcCCccce--EEEeccC--Cc-ccCceEE---
Confidence 99999999988777766656666678999887644333 234455555544 345 6667664 32 2346765
Q ss_pred EEEcCCC
Q 006212 363 VTVTPHL 369 (656)
Q Consensus 363 vilTPH~ 369 (656)
||-+|+.
T Consensus 485 vv~g~~T 491 (737)
T TIGR02441 485 IITHDGT 491 (737)
T ss_pred EeCCCCC
Confidence 6666653
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0016 Score=55.42 Aligned_cols=72 Identities=10% Similarity=0.123 Sum_probs=58.0
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC-CHHHHHHHhcCCCccEEEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~-~~e~l~~L~~~~~V~~v~~ 629 (656)
.|.|-+...++||++++|+.++...|.||..|.++..+..+..=+.+.++++- =+.+.++|.++.+|.+|.+
T Consensus 3 ~~~lsi~v~n~pGVL~Ri~~lf~rRGfnI~sl~v~~t~~~~~sriti~v~~~~~i~ql~kQL~KL~dV~~V~~ 75 (76)
T PRK11152 3 QHQLTIKARFRPEVLERVLRVVRHRGFQVCSMNMTQNTDAQNINIELTVASERPIDLLSSQLNKLVDVAHVEI 75 (76)
T ss_pred eEEEEEEEECCccHHHHHHHHHhcCCeeeeeEEeeecCCCCEEEEEEEECCCchHHHHHHHHhcCcCeEEEEE
Confidence 36777788899999999999999999999999999876666666666665433 3378888899988888764
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0011 Score=69.93 Aligned_cols=78 Identities=14% Similarity=0.204 Sum_probs=65.3
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|+.|..++... .++.+..++||+|+.++. . .+++
T Consensus 153 y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVtichs~T------------~~L~~~~~~ADIvV~AvG-k---p~~i 216 (288)
T PRK14171 153 YEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVTICHSKT------------HNLSSITSKADIVVAAIG-S---PLKL 216 (288)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccC-C---CCcc
Confidence 46789999999999986 79999999998999999876432 247888999999999998 2 3577
Q ss_pred cHHHHhcCCCCcEEEEcC
Q 006212 302 NDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 302 ~~~~l~~mK~gailINva 319 (656)
..+. .|+|+++||+|
T Consensus 217 ~~~~---vk~GavVIDvG 231 (288)
T PRK14171 217 TAEY---FNPESIVIDVG 231 (288)
T ss_pred CHHH---cCCCCEEEEee
Confidence 7665 48999999998
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0011 Score=71.69 Aligned_cols=79 Identities=19% Similarity=0.209 Sum_probs=65.9
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+.+++||+|+.++. ..+++
T Consensus 225 y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVTicHs~T------------~nl~~~~r~ADIVIsAvG----kp~~i 288 (364)
T PLN02616 225 YNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVSIVHSRT------------KNPEEITREADIIISAVG----QPNMV 288 (364)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEEEeCCCC------------CCHHHHHhhCCEEEEcCC----CcCcC
Confidence 46789999999999886 79999999999999999886432 257888999999999998 23467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 289 ~~d~---vK~GAvVIDVGI 304 (364)
T PLN02616 289 RGSW---IKPGAVVIDVGI 304 (364)
T ss_pred CHHH---cCCCCEEEeccc
Confidence 7665 499999999983
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.028 Score=62.98 Aligned_cols=67 Identities=15% Similarity=0.238 Sum_probs=45.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCH---HHHHHHhcCCCccE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ---DSLKEIGKVPAIEE 626 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~---e~l~~L~~~~~V~~ 626 (656)
|.|-+...|+||++++|+.+|++++|||..+...... ++.+=+++-++..... +++++|.+++.|..
T Consensus 349 yylRl~v~d~pGvLa~I~~~f~~~~vsI~si~q~~~~-~~~~~ivivT~~~~e~~l~~~i~~L~~l~~V~~ 418 (426)
T PRK06349 349 YYLRLLVADKPGVLAKIAAIFAENGISIESILQKGAG-GEGAEIVIVTHETSEAALRAALAAIEALDVVLG 418 (426)
T ss_pred EEEEEEecCCcchHHHHHHHHhhcCccEEEEEeccCC-CCceeEEEEEEeCCHHHHHHHHHHHhcCccccc
Confidence 5566667899999999999999999999988765332 2334333444432223 55677777776654
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0011 Score=71.38 Aligned_cols=79 Identities=19% Similarity=0.299 Sum_probs=65.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|..|..+.... -++.+..++||+|+.+++. .+++
T Consensus 208 ~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVTicHs~T------------~nl~~~~~~ADIvIsAvGk----p~~v 271 (345)
T PLN02897 208 SGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVSTVHAFT------------KDPEQITRKADIVIAAAGI----PNLV 271 (345)
T ss_pred hCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEEEEcCCC------------CCHHHHHhhCCEEEEccCC----cCcc
Confidence 47899999999999986 69999999999999998876432 1478889999999999982 3467
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 272 ~~d~---vk~GavVIDVGi 287 (345)
T PLN02897 272 RGSW---LKPGAVVIDVGT 287 (345)
T ss_pred CHHH---cCCCCEEEEccc
Confidence 7665 489999999984
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.0022 Score=63.60 Aligned_cols=97 Identities=21% Similarity=0.103 Sum_probs=65.3
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCCh-h-HHHHc----CCe-----ecC---HHHHhccCCEEE
Q 006212 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA-D-KARAV----GVE-----LVS---FDQALATADFIS 288 (656)
Q Consensus 224 g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-~a~~~----g~~-----~~~---l~ell~~aDvV~ 288 (656)
|..+.++++.|+|. |.+|+.+++.+...|.+|..++++... + ..... +.. ..+ +.+.++++|+|+
T Consensus 23 ~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi 102 (194)
T cd01078 23 GKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVF 102 (194)
T ss_pred CcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEE
Confidence 56788999999995 999999999999889999999876421 1 11111 221 112 346788999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
.++|....+ .... -...+++.+++|+.+...+
T Consensus 103 ~at~~g~~~--~~~~--~~~~~~~~vv~D~~~~~~~ 134 (194)
T cd01078 103 AAGAAGVEL--LEKL--AWAPKPLAVAADVNAVPPV 134 (194)
T ss_pred ECCCCCcee--chhh--hcccCceeEEEEccCCCCC
Confidence 999855431 1111 1124567889998766543
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >PRK06737 acetolactate synthase 1 regulatory subunit; Validated | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0013 Score=55.92 Aligned_cols=70 Identities=7% Similarity=0.122 Sum_probs=54.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe--CCCCCHHHHHHHhcCCCccEEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEPNQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~--D~~~~~e~l~~L~~~~~V~~v~ 628 (656)
|+|.+...|+||++.+|+.++...|+||..+.++..+..+..=|.+.+ |+..-+.+.++|.++.+|.++.
T Consensus 3 ~tisi~v~n~pGVL~Ri~~lf~rRgfNI~Sl~vg~te~~~~sriti~~~~~~~~i~qi~kQL~KLidV~~V~ 74 (76)
T PRK06737 3 HTFSLVIHNDPSVLLRISGIFARRGYYISSLNLNERDTSGVSEMKLTAVCTENEATLLVSQLKKLINVLQVN 74 (76)
T ss_pred EEEEEEEecCCCHHHHHHHHHhccCcceEEEEecccCCCCeeEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 677788899999999999999999999999999976655555444443 3333337788888888887765
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.002 Score=69.09 Aligned_cols=84 Identities=21% Similarity=0.245 Sum_probs=59.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-h-HHHH---cC--Cee-cCHHHHhccCCEEEEccCCCccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KARA---VG--VEL-VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~-~a~~---~g--~~~-~~l~ell~~aDvV~l~~Plt~~T 297 (656)
..++++|||.|.+|+.+++.+.. ++ .+|.+||++... + .+.+ .| +.. .++++.+++||+|+.++|..
T Consensus 124 ~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~--- 200 (314)
T PRK06141 124 DASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST--- 200 (314)
T ss_pred CCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---
Confidence 47899999999999999986653 44 689999987522 2 2222 14 333 37889999999998888743
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006212 298 SKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINv 318 (656)
..++..+ .+|+|+ +||+
T Consensus 201 ~pvl~~~---~l~~g~-~i~~ 217 (314)
T PRK06141 201 EPLVRGE---WLKPGT-HLDL 217 (314)
T ss_pred CCEecHH---HcCCCC-EEEe
Confidence 4556553 468998 4554
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0017 Score=68.45 Aligned_cols=111 Identities=19% Similarity=0.281 Sum_probs=81.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc--CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG--LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.++.||++.|||-+. +|+.+|..|.. .++.|..+.... -++.+.+++||+|+.+++. .+
T Consensus 152 ~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVtvchs~T------------~~l~~~~k~ADIvV~AvGk----p~ 215 (284)
T PRK14193 152 YDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVTLCHTGT------------RDLAAHTRRADIIVAAAGV----AH 215 (284)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEEEeCCCC------------CCHHHHHHhCCEEEEecCC----cC
Confidence 47799999999999875 79999999987 789999886532 2588889999999999983 24
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ 374 (656)
++..+. +|+|+++||+|--.+ .+|++.| ||- .+ ..+.+.+ +||--||--.
T Consensus 216 ~i~~~~---ik~GavVIDvGin~~----------~~gkl~G---Dvd-~~-------v~~~a~~-iTPVPGGVGp 265 (284)
T PRK14193 216 LVTADM---VKPGAAVLDVGVSRA----------GDGKLVG---DVH-PD-------VWEVAGA-VSPNPGGVGP 265 (284)
T ss_pred ccCHHH---cCCCCEEEEcccccc----------CCCcEEe---ecC-Hh-------HHhhCCE-EeCCCCChhH
Confidence 677665 489999999984432 3455533 553 11 2223333 8999887644
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0079 Score=65.35 Aligned_cols=160 Identities=19% Similarity=0.194 Sum_probs=111.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-h-HHHHcC----C-eecCHHHH---hccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-D-KARAVG----V-ELVSFDQA---LATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~-~a~~~g----~-~~~~l~el---l~~aDvV~l~~Plt~~T~~ 299 (656)
..||+||||.||+.+|......|++|.+|++.... + ..++.+ + ...+++|+ ++.-.-|++.+-.-.....
T Consensus 4 ~~iGviGLaVMG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~ 83 (473)
T COG0362 4 ADIGVIGLAVMGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDA 83 (473)
T ss_pred cceeeEehhhhhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHH
Confidence 46999999999999999999999999999998632 2 222222 1 22367765 4566677777643211122
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
+| ++.+..|-+|-++||-+-..--|+..-.++|.+..|...|.-|.+.|-- .+. -|-+ +-+-+.|+++.
T Consensus 84 ~I-~~L~p~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeG----A~~-GPSi-----MpGG~~eay~~ 152 (473)
T COG0362 84 VI-EQLLPLLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEG----ARH-GPSI-----MPGGQKEAYEL 152 (473)
T ss_pred HH-HHHHhhcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccc----ccc-CCCc-----CCCCCHHHHHH
Confidence 33 5567789999999999988777888888889988888888899998832 232 3444 33677888888
Q ss_pred HHHHHHHHHHHHHcCCCCCccc
Q 006212 380 VAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~V 401 (656)
++- +.+.|.+-..|++...-|
T Consensus 153 v~p-il~~IaAk~~g~pCc~~i 173 (473)
T COG0362 153 VAP-ILTKIAAKVDGEPCCTWI 173 (473)
T ss_pred HHH-HHHHHHhhcCCCCceeeE
Confidence 743 556666666666654433
|
|
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0052 Score=73.01 Aligned_cols=128 Identities=16% Similarity=0.147 Sum_probs=84.9
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEEEECCCCC-hhHH-----------HHcC-------------Ceec-CHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYAP-ADKA-----------RAVG-------------VELV-SFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~~-~l~ell~ 282 (656)
++|+|||.|.||..+|..+. ..|++|..||+... .+.+ .+.| +..+ ++ +.++
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~ 388 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFK 388 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhc
Confidence 68999999999999999988 77999999998642 1111 1111 1122 45 4579
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+=++|.+.+.+.-+-.+.=+.++|+++|....++= ....|.+.+.. .++ .+++.|. |+ ..-||.|
T Consensus 389 ~aDlViEav~E~~~~K~~v~~~le~~~~~~~ilasnTS~l--~i~~la~~~~~p~r~--ig~Hff~--P~-~~~~lVE-- 459 (708)
T PRK11154 389 HADVVIEAVFEDLALKQQMVAEVEQNCAPHTIFASNTSSL--PIGQIAAAAARPEQV--IGLHYFS--PV-EKMPLVE-- 459 (708)
T ss_pred cCCEEeecccccHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHHhcCcccce--EEEecCC--cc-ccCceEE--
Confidence 9999999999887777666555556689999987665543 34445555543 455 5667663 32 2346664
Q ss_pred cEEEcCC
Q 006212 362 NVTVTPH 368 (656)
Q Consensus 362 nvilTPH 368 (656)
||-.|+
T Consensus 460 -vv~g~~ 465 (708)
T PRK11154 460 -VIPHAK 465 (708)
T ss_pred -EECCCC
Confidence 554444
|
|
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0021 Score=68.09 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=64.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.+++.
T Consensus 151 ~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~nl~~~~~~ADIvIsAvGk---- 214 (293)
T PRK14185 151 YHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVTVCHSRS------------KNLKKECLEADIIIAALGQ---- 214 (293)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEEEecCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999986 799999999865 78998875432 1578889999999999982
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.+++..+. .|+|+++||+|-
T Consensus 215 p~~i~~~~---vk~gavVIDvGi 234 (293)
T PRK14185 215 PEFVKADM---VKEGAVVIDVGT 234 (293)
T ss_pred cCccCHHH---cCCCCEEEEecC
Confidence 34576655 599999999984
|
|
| >PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.00068 Score=60.71 Aligned_cols=87 Identities=25% Similarity=0.305 Sum_probs=61.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--cCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.+++|+++.|||.|.+|..=++.|...|.+|.+++|.. ...+..+++ ..+++.+..+|+|+.+++... ++
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~---~~~~~~i~~~~~~~~~~l~~~~lV~~at~d~~-----~n 74 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI---EFSEGLIQLIRREFEEDLDGADLVFAATDDPE-----LN 74 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE---HHHHTSCEEEESS-GGGCTTESEEEE-SS-HH-----HH
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch---hhhhhHHHHHhhhHHHHHhhheEEEecCCCHH-----HH
Confidence 36899999999999999999999999999999999875 112223333 256677899999998886322 45
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006212 303 DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 303 ~~~l~~mK~gailINva 319 (656)
+......+.--+++|++
T Consensus 75 ~~i~~~a~~~~i~vn~~ 91 (103)
T PF13241_consen 75 EAIYADARARGILVNVV 91 (103)
T ss_dssp HHHHHHHHHTTSEEEET
T ss_pred HHHHHHHhhCCEEEEEC
Confidence 55566666566888876
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=70.41 Aligned_cols=91 Identities=27% Similarity=0.393 Sum_probs=68.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC--ChhHHHHcCCeecCH---HHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA--PADKARAVGVELVSF---DQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~--~~~~a~~~g~~~~~l---~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.|.++++.|||.|-||.-+|+.|...| .+|+..+|.. ..+.+.+.|..++.+ .+.+.++|+|+.++- ....
T Consensus 175 ~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTs---a~~~ 251 (414)
T COG0373 175 SLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTS---APHP 251 (414)
T ss_pred ccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecC---CCcc
Confidence 389999999999999999999999999 5788888876 345578888776654 557899999999864 2345
Q ss_pred cccHHHHhcC---CCCcEEEEcC
Q 006212 300 IFNDETFAKM---KKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~m---K~gailINva 319 (656)
++..+.+... ++.-++||.|
T Consensus 252 ii~~~~ve~a~~~r~~~livDia 274 (414)
T COG0373 252 IITREMVERALKIRKRLLIVDIA 274 (414)
T ss_pred ccCHHHHHHHHhcccCeEEEEec
Confidence 5655544432 1225778876
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0019 Score=67.64 Aligned_cols=81 Identities=17% Similarity=0.295 Sum_probs=66.1
Q ss_pred ccccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccc
Q 006212 222 YVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+.+.+|+||++.|||-+.| |+.+|..|...++.|.+++... -++.+..++||+|+.++- -.++
T Consensus 149 ~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVtvcHs~T------------~~l~~~~k~ADIvv~AvG----~p~~ 212 (283)
T COG0190 149 EYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVTVCHSRT------------KDLASITKNADIVVVAVG----KPHF 212 (283)
T ss_pred HhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEEEEcCCC------------CCHHHHhhhCCEEEEecC----Cccc
Confidence 3467999999999999985 8999999999999999987542 247788999999999986 2356
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 006212 301 FNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg 321 (656)
+..+. .|+|+++||+|--
T Consensus 213 i~~d~---vk~gavVIDVGin 230 (283)
T COG0190 213 IKADM---VKPGAVVIDVGIN 230 (283)
T ss_pred ccccc---ccCCCEEEecCCc
Confidence 65544 5999999999843
|
|
| >PRK11895 ilvH acetolactate synthase 3 regulatory subunit; Reviewed | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0017 Score=63.08 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=60.5
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEEEEEeecc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEYTLLHVSY 634 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v~~v~l~~ 634 (656)
|+|-+...|+||++++|+.+++++|+||..+.++.....+..-+.+.++. ..=+.+.++|.++..|.+|..+.-+.
T Consensus 3 ~~IsV~veN~pGvL~rI~~lf~rrg~NI~Sl~v~~te~~~~sriti~V~~~~~~i~qi~kQl~KLidV~~V~~~~~~~ 80 (161)
T PRK11895 3 HTLSVLVENEPGVLSRVAGLFSRRGYNIESLTVGPTEDPGLSRMTIVTSGDEQVIEQITKQLNKLIDVLKVVDLTEEA 80 (161)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCCcEEEEEeeecCCCCEEEEEEEEECCHHHHHHHHHHHhccccEEEEEecCCcc
Confidence 67778899999999999999999999999999987765566666666654 33347788888888888887765433
|
|
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.003 Score=67.50 Aligned_cols=86 Identities=13% Similarity=0.135 Sum_probs=64.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh--hHHHHc---CCee--cCHHHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA--DKARAV---GVEL--VSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~--~~a~~~---g~~~--~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
..++++|||.|.+|+..++.+.. ++ -+|.+||++... ..+.+. ++.. .++++++.+||+|+.|+|.+ .
T Consensus 124 ~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~---~ 200 (304)
T PRK07340 124 PPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSR---T 200 (304)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCC---C
Confidence 46899999999999999999864 56 479999987522 222222 3332 37899999999999999854 3
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++.. .+|||+.|+.+|.
T Consensus 201 Pl~~~----~~~~g~hi~~iGs 218 (304)
T PRK07340 201 PVYPE----AARAGRLVVAVGA 218 (304)
T ss_pred ceeCc----cCCCCCEEEecCC
Confidence 55653 2699999999884
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.0035 Score=65.68 Aligned_cols=94 Identities=18% Similarity=0.212 Sum_probs=64.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHc---C-CeecCHHHH-hccCCEEEEccCCC--ccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV---G-VELVSFDQA-LATADFISLHMPLN--PTT 297 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~---g-~~~~~l~el-l~~aDvV~l~~Plt--~~T 297 (656)
..+|+++|+|.|.+|++++..+...|.+|.++|++... +.+... + ....++++. +.++|+|+.|+|.. +..
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~ 194 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNI 194 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCC
Confidence 46889999999999999999999889999999987421 122221 2 223355543 35899999999964 221
Q ss_pred cc-cccHHHHhcCCCCcEEEEcCCCch
Q 006212 298 SK-IFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 298 ~~-li~~~~l~~mK~gailINvaRg~i 323 (656)
.. .+. ...++++.+++|+.-...
T Consensus 195 ~~~~~~---~~~l~~~~~v~D~~y~p~ 218 (270)
T TIGR00507 195 DEPPVP---AEKLKEGMVVYDMVYNPG 218 (270)
T ss_pred CCCCCC---HHHcCCCCEEEEeccCCC
Confidence 11 122 334688888888875543
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >TIGR00119 acolac_sm acetolactate synthase, small subunit | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0021 Score=62.22 Aligned_cols=74 Identities=18% Similarity=0.280 Sum_probs=58.6
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEee
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
|+|-+...|+||++++|+.++.++|+||..+.++.....+..-+.+.++.. .-+.+.++|.++-.|.+|..+.-
T Consensus 2 ~~isI~ven~pGvL~rI~~lf~rrg~NI~Sl~v~~t~~~~~sriti~V~~d~~~i~qi~kQl~Kli~V~~V~~~~~ 77 (157)
T TIGR00119 2 HILSVLVENEPGVLSRVAGLFTRRGFNIESLTVGPTEDPDLSRMTIVVVGDDKVLEQITKQLNKLVDVIKVSDLTE 77 (157)
T ss_pred EEEEEEEcCCCcHHHHHHHHHHhCCceEEEEEEeecCCCCEEEEEEEEECCHHHHHHHHHHHhcCccEEEEEecCC
Confidence 577788999999999999999999999999999887656677777777652 22366777788888887776654
|
acetohydroxyacid synthase is a synonym. |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0025 Score=67.26 Aligned_cols=78 Identities=22% Similarity=0.327 Sum_probs=65.1
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc----CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~----~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|.. .+..|..++... .++.+.+++||+|+.+++ .
T Consensus 151 ~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt~~hs~t------------~~l~~~~~~ADIVI~AvG----~ 214 (286)
T PRK14184 151 YGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVTVCHSRT------------PDLAEECREADFLFVAIG----R 214 (286)
T ss_pred hCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecC----C
Confidence 46799999999999986 69999999987 789998876432 258889999999999996 3
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
.+++..+.+ |+|+++||+|
T Consensus 215 p~li~~~~v---k~GavVIDVG 233 (286)
T PRK14184 215 PRFVTADMV---KPGAVVVDVG 233 (286)
T ss_pred CCcCCHHHc---CCCCEEEEee
Confidence 456777665 9999999998
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0029 Score=67.15 Aligned_cols=81 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+.+++||+|+.++. .
T Consensus 155 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVtv~hs~T------------~~l~~~~~~ADIvVsAvG-k--- 218 (297)
T PRK14168 155 SGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVTIVHTRS------------KNLARHCQRADILIVAAG-V--- 218 (297)
T ss_pred hCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEEEecCCC------------cCHHHHHhhCCEEEEecC-C---
Confidence 47899999999999875 799999999876 78998875431 157888999999999997 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~ 322 (656)
.+++..+. .|+|+++||+|--.
T Consensus 219 p~~i~~~~---ik~gavVIDvGin~ 240 (297)
T PRK14168 219 PNLVKPEW---IKPGATVIDVGVNR 240 (297)
T ss_pred cCccCHHH---cCCCCEEEecCCCc
Confidence 34677665 48999999998443
|
|
| >PRK14031 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0074 Score=67.46 Aligned_cols=107 Identities=25% Similarity=0.265 Sum_probs=71.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE-C-------CC-CChhHH------------------HHcCCeecC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PY-APADKA------------------RAVGVELVS 276 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d-------~~-~~~~~a------------------~~~g~~~~~ 276 (656)
|.+|.|+||.|.|+|++|+..|+.|..+|.+|++. | +. .+.... ...++...+
T Consensus 223 g~~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~ga~~i~ 302 (444)
T PRK14031 223 GTDLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKYGCKYVE 302 (444)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhcCCEEcC
Confidence 66899999999999999999999999999999983 3 22 111110 111344445
Q ss_pred HHHHh-ccCCEEEEccCCCccccccccHHHHhcCCC-CcEEEEc-CCCchhcHHHHHHhHhcC
Q 006212 277 FDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKK-GVRIVNV-ARGGVIDEEALVRALDSG 336 (656)
Q Consensus 277 l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK~-gailINv-aRg~ivde~aL~~aL~~g 336 (656)
.++++ ..||+++-|. +.+.|+.+...+++. |+.+|-- |-+ .+..++.....+.|
T Consensus 303 ~d~~~~~~cDIliPaA-----l~n~I~~~na~~l~a~g~~~V~EgAN~-P~t~eA~~~L~~rg 359 (444)
T PRK14031 303 GARPWGEKGDIALPSA-----TQNELNGDDARQLVANGVIAVSEGANM-PSTPEAIKVFQDAK 359 (444)
T ss_pred CcccccCCCcEEeecc-----cccccCHHHHHHHHhcCCeEEECCCCC-CCCHHHHHHHHHCC
Confidence 55554 4699998776 466788888888754 5655554 455 55555544333344
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0014 Score=69.09 Aligned_cols=94 Identities=27% Similarity=0.367 Sum_probs=71.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh-HHH-HcCCe----e---cCHHHHhccCCEEEEccCC-Cc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KAR-AVGVE----L---VSFDQALATADFISLHMPL-NP 295 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~-~a~-~~g~~----~---~~l~ell~~aDvV~l~~Pl-t~ 295 (656)
.+...++.|||.|-+|..-|+.+.++|.+|...|.+...- ... ..+.+ + ..+++.+.++|+|+-++=. ..
T Consensus 165 GV~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpga 244 (371)
T COG0686 165 GVLPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGA 244 (371)
T ss_pred CCCCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCC
Confidence 3566789999999999999999999999999998774221 111 11222 1 2488999999999876532 22
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
..-.++.++.++.||||++|||++
T Consensus 245 kaPkLvt~e~vk~MkpGsVivDVA 268 (371)
T COG0686 245 KAPKLVTREMVKQMKPGSVIVDVA 268 (371)
T ss_pred CCceehhHHHHHhcCCCcEEEEEE
Confidence 345678889999999999999994
|
|
| >cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.0028 Score=53.07 Aligned_cols=69 Identities=17% Similarity=0.234 Sum_probs=52.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC-HHHHHHHhcCCCccEEEEEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN-QDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~-~e~l~~L~~~~~V~~v~~v~l 632 (656)
|-+...|++|+++.|++++++.++||.++++... +.-.+.+++.+.-. ..++++|+++++|.+|+-+++
T Consensus 3 l~I~~~dr~Gll~dI~~~i~~~~~nI~~~~~~~~---~~i~l~i~v~~~~~L~~li~~L~~i~gV~~V~R~~~ 72 (74)
T cd04877 3 LEITCEDRLGITQEVLDLLVEHNIDLRGIEIDPK---GRIYLNFPTIEFEKLQTLMPEIRRIDGVEDVKTVPY 72 (74)
T ss_pred EEEEEEccchHHHHHHHHHHHCCCceEEEEEecC---CeEEEEeEecCHHHHHHHHHHHhCCCCceEEEEeec
Confidence 5567889999999999999999999999999532 22233344433222 489999999999999988764
|
ACT_TyrR: N-terminal ACT domain of the TyrR protein. The TyrR protein of Escherichia coli controls the expression of a group of transcription units (TyrR regulon) whose gene products are involved in the biosynthesis or transport of the aromatic amino acids. Binding to specific DNA sequences known as TyrR boxes, the TyrR protein can either activate or repress transcription at different sigma70 promoters. Its regulatory activity occurs in response to intracellular levels of tyrosine, phenylalanine and tryptophan. The TyrR protein consists of an N-terminal region important for transcription activation with an ATP-independent aromatic amino acid binding site (contained within the ACT domain) and is involved in dimerization; a central region with an ATP binding site, an ATP-dependent aromatic amino acid binding site and is involved in hexamerization; and a helix turn helix DNA binding C-terminal region. In solution, in the absence |
| >PRK00194 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.00098 Score=57.88 Aligned_cols=68 Identities=21% Similarity=0.194 Sum_probs=49.9
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCC-CCCH-HHHHHHhcCCCccEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDE-EPNQ-DSLKEIGKVPAIEEY 627 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~-~~~~-e~l~~L~~~~~V~~v 627 (656)
.+.+.+..+|+||+++.|++.|+++|+||.+++... .++...+. ++++. +.+. ++.++|.++.....+
T Consensus 3 ~~~ltv~g~DrpGiva~vt~~la~~g~nI~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~l~~l~~~~~~ 74 (90)
T PRK00194 3 KAIITVIGKDKVGIIAGVSTVLAELNVNILDISQTI--MDGYFTMIMLVDISESKKDFAELKEELEELGKELGV 74 (90)
T ss_pred eEEEEEEcCCCCCHHHHHHHHHHHcCCCEEehhhHh--hCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHcCC
Confidence 456777899999999999999999999999999865 35666664 44554 3334 555677776654443
|
|
| >cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2 | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.011 Score=61.53 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=71.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--------CCCC-ChhHH------H-Hc------------CCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA------R-AV------------GVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--------d~~~-~~~~a------~-~~------------g~~~~ 275 (656)
+.++.|+|+.|-|+|++|+.+|+.|..+|++|++. ||.- +.+.. + +. +.+.+
T Consensus 33 ~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gld~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~ 112 (254)
T cd05313 33 NETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGFTGEKLAELKEIKEVRRGRVSEYAKKYGTAKYF 112 (254)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCCCHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEe
Confidence 56889999999999999999999999999999953 3331 11100 0 11 23344
Q ss_pred CHHHHh-ccCCEEEEccCCCccccccccHHHHhcCC--CCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMK--KGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 276 ~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK--~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+.++++ .+||+++-|. +.+.|+.+...+++ +-.+|+-.+-+++-. ++ -+.|.++.|
T Consensus 113 ~~~~~~~~~~DIliPcA-----l~~~I~~~na~~i~~~~ak~I~EgAN~p~t~-~a-~~~L~~rGI 171 (254)
T cd05313 113 EGKKPWEVPCDIAFPCA-----TQNEVDAEDAKLLVKNGCKYVAEGANMPCTA-EA-IEVFRQAGV 171 (254)
T ss_pred CCcchhcCCCcEEEecc-----ccccCCHHHHHHHHHcCCEEEEeCCCCCCCH-HH-HHHHHHCCc
Confidence 555554 4799998875 56778888887774 334566666677644 32 234555434
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t |
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.0029 Score=67.95 Aligned_cols=85 Identities=15% Similarity=0.200 Sum_probs=59.5
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+.+++.++.. ++++.+ +|+..........++. ..+.++++.+.|+|++|+|... . -....
T Consensus 4 IRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~~~~~~~~~~~v~~~~d~~e~l~~iDVViIctPs~t--h---~~~~~ 78 (324)
T TIGR01921 4 IRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRRGAETLDTETPVYAVADDEKHLDDVDVLILCMGSAT--D---IPEQA 78 (324)
T ss_pred cEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCCcHHHHhhcCCccccCCHHHhccCCCEEEEcCCCcc--C---HHHHH
Confidence 5899999999999999999865 899887 6876422222223332 2367788899999999999442 2 13333
Q ss_pred hcCCCCcEEEEcC
Q 006212 307 AKMKKGVRIVNVA 319 (656)
Q Consensus 307 ~~mK~gailINva 319 (656)
..|+.|.=+|+..
T Consensus 79 ~~L~aG~NVV~s~ 91 (324)
T TIGR01921 79 PYFAQFANTVDSF 91 (324)
T ss_pred HHHHcCCCEEECC
Confidence 4467777777774
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0039 Score=66.18 Aligned_cols=79 Identities=16% Similarity=0.270 Sum_probs=63.9
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcC----CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGL----GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~----G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+.+|..|... +..|..+.... -++.+..++||+|+.++-.
T Consensus 151 ~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVtvchs~T------------~~l~~~~~~ADIvIsAvGk---- 214 (297)
T PRK14167 151 AGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVTVCHSRT------------DDLAAKTRRADIVVAAAGV---- 214 (297)
T ss_pred hCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEEEeCCCC------------CCHHHHHhhCCEEEEccCC----
Confidence 46789999999999986 799999999865 78998875432 1478889999999999872
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.+++..+. .|+|+++||+|-
T Consensus 215 p~~i~~~~---ik~gaiVIDvGi 234 (297)
T PRK14167 215 PELIDGSM---LSEGATVIDVGI 234 (297)
T ss_pred cCccCHHH---cCCCCEEEEccc
Confidence 34677655 599999999983
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0044 Score=69.00 Aligned_cols=89 Identities=15% Similarity=0.219 Sum_probs=62.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC--hhHHHHcC-Ceec---CHHHHhccCCEEEEccCCCcccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP--ADKARAVG-VELV---SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~--~~~a~~~g-~~~~---~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.+.|+++.|||.|.||+.+|+.|...|. +|.++++... ...+...+ .... ++.+.+.++|+|+.|++.. .
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~---~ 254 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVL---E 254 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCC---C
Confidence 4789999999999999999999998885 7999998752 23334444 3333 3556789999999998743 3
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
.++..+... .+..++||.|
T Consensus 255 ~vi~~~~~~--~~~~~~iDLa 273 (414)
T PRK13940 255 YIVTCKYVG--DKPRVFIDIS 273 (414)
T ss_pred eeECHHHhC--CCCeEEEEeC
Confidence 455554432 2234666664
|
|
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0035 Score=66.58 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=64.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhc----CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKG----LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~----~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+.++.||++.|||-+. +|+++|..|.. .|..|..+.... .++.+.+++||+|+.+++..
T Consensus 153 y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt~~hs~t------------~~l~~~~~~ADIvI~Avg~~--- 217 (295)
T PRK14174 153 YNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVTICHSAT------------KDIPSYTRQADILIAAIGKA--- 217 (295)
T ss_pred hCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEEEEeCCc------------hhHHHHHHhCCEEEEecCcc---
Confidence 46789999999999986 79999999876 578888776432 14788899999999999632
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
+++..+.+ |+|+++||+|-
T Consensus 218 -~li~~~~v---k~GavVIDVgi 236 (295)
T PRK14174 218 -RFITADMV---KPGAVVIDVGI 236 (295)
T ss_pred -CccCHHHc---CCCCEEEEeec
Confidence 56887776 99999999983
|
|
| >cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.005 Score=51.02 Aligned_cols=66 Identities=15% Similarity=0.347 Sum_probs=50.3
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCC-HHHHHHHhcCCCccEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPN-QDSLKEIGKVPAIEEY 627 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~-~e~l~~L~~~~~V~~v 627 (656)
|.+...|+||.++.|++.+++.++||..++..+.. .+.+.+. +++.+... ..++++|+++|+|.-.
T Consensus 2 l~v~~~d~~g~L~~i~~~i~~~~~nI~~v~~~~~~-~~~~~~~~~vev~~~~~l~~i~~~L~~i~gV~~~ 70 (74)
T cd04887 2 LRLELPNRPGMLGRVTTAIGEAGGDIGAIDLVEQG-RDYTVRDITVDAPSEEHAETIVAAVRALPEVKVL 70 (74)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCCcEEEEEEEEec-CCEEEEEEEEEcCCHHHHHHHHHHHhcCCCeEEE
Confidence 56778999999999999999999999999986543 4555554 44444333 3889999999987643
|
The ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI, a malolactic enzyme (MalLac-Enz) which converts malate to lactate, and other related ACT domains. The yqkJ product is predicted to convert malate directly to lactate, as opposed to related malic enzymes that convert malate to pyruvate. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0066 Score=64.95 Aligned_cols=111 Identities=21% Similarity=0.261 Sum_probs=68.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc-----------C--Cee-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV-----------G--VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~-----------g--~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...|. +|+.+|.......+... . +.. .++++ +++||+|+++++ +
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag-~ 79 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAG-L 79 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCC-C
Confidence 579999999999999999887665 89999986543222211 1 122 36766 799999999998 3
Q ss_pred cccccc-------ccH-------HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEEE--ee
Q 006212 295 PTTSKI-------FND-------ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQAA--LD 344 (656)
Q Consensus 295 ~~T~~l-------i~~-------~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA~--lD 344 (656)
+...+. .|. +.+....+++++|+++- .+| ...+.+. +...++.|.+ ||
T Consensus 80 p~~~~~sR~~l~~~N~~iv~~i~~~I~~~~p~~~iIv~tN--P~di~t~~~~~~sg~~~~rviG~g~~ld 147 (305)
T TIGR01763 80 PRKPGMSREDLLSMNAGIVREVTGRIMEHSPNPIIVVVSN--PLDAMTYVAWQKSGFPKERVIGQAGVLD 147 (305)
T ss_pred CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecC--cHHHHHHHHHHHHCcCHHHEEEeccchH
Confidence 332221 111 12333457889999863 333 2233333 3344566654 55
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0022 Score=64.56 Aligned_cols=90 Identities=18% Similarity=0.243 Sum_probs=61.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcC-Ceec--CH-HHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVG-VELV--SF-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g-~~~~--~l-~ell~~aDvV~l~~Plt~~T 297 (656)
..+|.||++.|||.|.+|...++.|...|.+|.+++|....+ .....+ +.+. .+ ++.+..+|+|+.++....
T Consensus 5 ~l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e-- 82 (202)
T PRK06718 5 MIDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR-- 82 (202)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH--
Confidence 357999999999999999999999999999999999875332 222222 3222 12 345789999988887433
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|.......+.+ +++|++
T Consensus 83 ---lN~~i~~~a~~~-~lvn~~ 100 (202)
T PRK06718 83 ---VNEQVKEDLPEN-ALFNVI 100 (202)
T ss_pred ---HHHHHHHHHHhC-CcEEEC
Confidence 233333334444 577875
|
|
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0028 Score=71.90 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=53.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeecCHHHH--hccCCEEEEccCCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA--LATADFISLHMPLN 294 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~~l~el--l~~aDvV~l~~Plt 294 (656)
+.++.|++++|+|.|.+|++++..+...|++|.++|+.... +.+...+....+++++ +.++|+|+.|+|..
T Consensus 327 ~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~l~~~DiVInatP~g 401 (477)
T PRK09310 327 NIPLNNQHVAIVGAGGAAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPELHRIDIIINCLPPS 401 (477)
T ss_pred CCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcccCCCCEEEEcCCCC
Confidence 45678999999999999999999999999999999886421 1222233333344433 57899999999954
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0025 Score=69.18 Aligned_cols=89 Identities=22% Similarity=0.320 Sum_probs=61.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---------CC------ee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---------GV------EL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---------g~------~~-~~l~ell~~aDvV~l~~P 292 (656)
.+|+|||.|.+|..+|..|...| .|..|.++.. .+...+. +. .. .++++.++.+|+|++++|
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp 86 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP 86 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC
Confidence 57999999999999999999888 5666665431 1111111 11 12 267888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
...++..+. +....+++++.+|++..|
T Consensus 87 -s~~~~~vl~-~i~~~l~~~~~vIsl~kG 113 (341)
T PRK12439 87 -SHGFRGVLT-ELAKELRPWVPVVSLVKG 113 (341)
T ss_pred -HHHHHHHHH-HHHhhcCCCCEEEEEEeC
Confidence 333444442 233457888889999875
|
|
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0034 Score=56.78 Aligned_cols=63 Identities=22% Similarity=0.393 Sum_probs=49.4
Q ss_pred EEEEEecChhHHHHHHHHhcC--CCEEE-EECCCCC-h-hHHHHcCCee-cCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAP-A-DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~--G~~Vi-~~d~~~~-~-~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
++||||+|.+|+.....++.. ++++. ++|+... . ..++..|+.. .+++++++ +.|+|++++|.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~ 72 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPP 72 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSG
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCC
Confidence 699999999999999888755 67776 4788752 2 2345667764 48999998 79999999994
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0045 Score=50.65 Aligned_cols=61 Identities=20% Similarity=0.362 Sum_probs=48.8
Q ss_pred CCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC--CHHHHHHHhcCCCccEE
Q 006212 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP--NQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 567 D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~--~~e~l~~L~~~~~V~~v 627 (656)
|+||++.+|+.++...|+||..|.++..+..+..-+.+.++... -+.+..+|.++.+|.+|
T Consensus 1 n~~GvL~Ri~~vf~rRg~nI~sl~v~~~~~~~~~riti~v~~~~~~i~~l~~Ql~KlidV~~V 63 (63)
T PF13710_consen 1 NQPGVLNRITGVFRRRGFNIESLSVGPTEDPGISRITIVVSGDDREIEQLVKQLEKLIDVVKV 63 (63)
T ss_dssp SSTTHHHHHHHHHHTTT-EECEEEEEE-SSTTEEEEEEEEES-CCHHHHHHHHHHCSTTEEEE
T ss_pred CCcHHHHHHHHHHhcCCeEEeeEEeeecCCCCEEEEEEEEeeCchhHHHHHHHHhccCCeEeC
Confidence 68999999999999999999999999877777776767766633 33788999999988765
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.016 Score=61.93 Aligned_cols=128 Identities=23% Similarity=0.197 Sum_probs=81.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hh-----------HHHHcCC-------------ee-cCHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-AD-----------KARAVGV-------------EL-VSFDQALA 282 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~-----------~a~~~g~-------------~~-~~l~ell~ 282 (656)
-+++||||.|.||+.+|..+...|+.|..+|++.. .+ ...+.|- .. .++. .++
T Consensus 3 i~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~ 81 (307)
T COG1250 3 IKKVAVIGAGVMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALK 81 (307)
T ss_pred ccEEEEEcccchhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-Hhc
Confidence 47999999999999999999887799999998731 11 1111121 11 1222 689
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQH 360 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~ 360 (656)
+||+|+=++|-+.+.++-+-++.=...||+++|- |+++-. ..++.++++.. ++ .|++.|.+-|+ =||.+
T Consensus 82 ~~DlVIEAv~E~levK~~vf~~l~~~~~~~aIlASNTSsl~---it~ia~~~~rper~--iG~HFfNP~~~---m~LVE- 152 (307)
T COG1250 82 DADLVIEAVVEDLELKKQVFAELEALAKPDAILASNTSSLS---ITELAEALKRPERF--IGLHFFNPVPL---MPLVE- 152 (307)
T ss_pred cCCEEEEeccccHHHHHHHHHHHHhhcCCCcEEeeccCCCC---HHHHHHHhCCchhE--EEEeccCCCCc---ceeEE-
Confidence 9999999999877766655555555578998885 444433 34455555432 44 66676653322 24543
Q ss_pred CcEEEcCC
Q 006212 361 ENVTVTPH 368 (656)
Q Consensus 361 ~nvilTPH 368 (656)
+|-+.+
T Consensus 153 --vI~g~~ 158 (307)
T COG1250 153 --VIRGEK 158 (307)
T ss_pred --EecCCC
Confidence 555554
|
|
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0028 Score=58.11 Aligned_cols=88 Identities=18% Similarity=0.309 Sum_probs=54.5
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEEE-CCCC-ChhHHHHcC--Ce-----ecCHHHH-hccCCEEEEccCCCcccc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYA-PADKARAVG--VE-----LVSFDQA-LATADFISLHMPLNPTTS 298 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d~~~-~~~~a~~~g--~~-----~~~l~el-l~~aDvV~l~~Plt~~T~ 298 (656)
++||+| .|.+|+.+++.+... ++++.+. +... ....+...+ +. ..+.+++ ..++|+|++|+|.. .+.
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~-~~~ 79 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHG-VSK 79 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcH-HHH
Confidence 589999 599999999999875 7887775 4222 111111111 10 1121222 25899999999944 333
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
..+. .....+++|+++||++.
T Consensus 80 ~~~~-~~~~~~~~g~~viD~s~ 100 (122)
T smart00859 80 EIAP-LLPKAAEAGVKVIDLSS 100 (122)
T ss_pred HHHH-HHHhhhcCCCEEEECCc
Confidence 3322 23455799999999983
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0039 Score=62.90 Aligned_cols=90 Identities=18% Similarity=0.125 Sum_probs=64.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHc-CCeec--C-HHHHhccCCEEEEccCCCcccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAV-GVELV--S-FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~-g~~~~--~-l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.++.||++.|||.|.+|..-++.|..+|.+|.+++|....+ ...+. .+.+. + -.+.+..+|+|+.++...+
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~--- 81 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEE--- 81 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHH---
Confidence 46899999999999999999999999999999999876432 12222 34332 1 1345788999888765332
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
+|.......++..+++|+.
T Consensus 82 --ln~~i~~~a~~~~ilvn~~ 100 (205)
T TIGR01470 82 --LNRRVAHAARARGVPVNVV 100 (205)
T ss_pred --HHHHHHHHHHHcCCEEEEC
Confidence 4555566566666888875
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0078 Score=64.92 Aligned_cols=86 Identities=15% Similarity=0.201 Sum_probs=62.6
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh--hHHHH----cCCee---cCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA--DKARA----VGVEL---VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~--~~a~~----~g~~~---~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..++.+. .++. +|.+|+++... ..+.. .|+.. .++++.+.+||+|+.|+|..
T Consensus 128 ~~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~-- 205 (326)
T TIGR02992 128 DSSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSE-- 205 (326)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCC--
Confidence 3579999999999999999987 4674 68999988522 22222 25433 36889999999999999853
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
..++..+. +|+|+.+..++
T Consensus 206 -~p~i~~~~---l~~g~~i~~vg 224 (326)
T TIGR02992 206 -TPILHAEW---LEPGQHVTAMG 224 (326)
T ss_pred -CcEecHHH---cCCCcEEEeeC
Confidence 34565543 68898776554
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PRK09414 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.011 Score=66.14 Aligned_cols=108 Identities=21% Similarity=0.261 Sum_probs=69.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE-C-------CCC-ChhHHH---------------HcCCeecCHHH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH-D-------PYA-PADKAR---------------AVGVELVSFDQ 279 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d-------~~~-~~~~a~---------------~~g~~~~~l~e 279 (656)
+.++.|+||.|.|+|++|+.+|+.|..+|++|++. | |.- +.+... ..+.+..+.++
T Consensus 227 ~~~l~g~rVaIqGfGnVG~~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L~~~k~~~~~~l~~~~~~~~~~~i~~~~ 306 (445)
T PRK09414 227 GDSFEGKRVVVSGSGNVAIYAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKLKEIKEVRRGRISEYAEEFGAEYLEGGS 306 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCchhhhhhhcCCeecCCcc
Confidence 56789999999999999999999999999999986 5 221 221110 00223344555
Q ss_pred Hhc-cCCEEEEccCCCccccccccHHHHhcCC-CC-cEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 280 ALA-TADFISLHMPLNPTTSKIFNDETFAKMK-KG-VRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 280 ll~-~aDvV~l~~Plt~~T~~li~~~~l~~mK-~g-ailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++. +||+++-|.. .+.|+.+....++ ++ .+|+-.|-+.+ ..++ .+.|.++.|
T Consensus 307 i~~~d~DVliPaAl-----~n~It~~~a~~i~~~~akiIvEgAN~p~-t~~A-~~~L~~rGI 361 (445)
T PRK09414 307 PWSVPCDIALPCAT-----QNELDEEDAKTLIANGVKAVAEGANMPS-TPEA-IEVFLEAGV 361 (445)
T ss_pred ccccCCcEEEecCC-----cCcCCHHHHHHHHHcCCeEEEcCCCCCC-CHHH-HHHHHHCCc
Confidence 554 7999988886 4457777666663 23 35556666776 4333 234555444
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.0055 Score=66.59 Aligned_cols=89 Identities=18% Similarity=0.221 Sum_probs=62.1
Q ss_pred EEEEEecChhHHHHHHHHhcCC--------CEEEEECCCC---ChhHHHH-----------cCC------ee-cCHHHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYA---PADKARA-----------VGV------EL-VSFDQAL 281 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G--------~~Vi~~d~~~---~~~~a~~-----------~g~------~~-~~l~ell 281 (656)
+|+|||.|..|.++|..+..-| .+|..|.+.. ....... .|+ .. .++++++
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal 80 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAA 80 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHH
Confidence 4899999999999999997656 8999997621 1111100 022 12 3789999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
++||+|++++| +...+.++ .+.-..++++..+|+++.|
T Consensus 81 ~~ADiIIlAVP-s~~i~~vl-~~l~~~l~~~~~iVs~tKG 118 (342)
T TIGR03376 81 KGADILVFVIP-HQFLEGIC-KQLKGHVKPNARAISCIKG 118 (342)
T ss_pred hcCCEEEEECC-hHHHHHHH-HHHHhhcCCCCEEEEEeCC
Confidence 99999999999 33333333 2333457888999999987
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0035 Score=67.17 Aligned_cols=93 Identities=20% Similarity=0.286 Sum_probs=65.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH-------c-CC------e-ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------V-GV------E-LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~-------~-g~------~-~~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||-|.-|.++|+.|..-|.+|..|.++... ..... + |+ . ..|++++++.||+|++.+|
T Consensus 2 ~kI~ViGaGswGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avP- 80 (329)
T COG0240 2 MKIAVIGAGSWGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVP- 80 (329)
T ss_pred ceEEEEcCChHHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECC-
Confidence 57999999999999999999888888888764211 00000 0 22 2 2379999999999999999
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+...+..+..- -..+++++.+++++.|=-.
T Consensus 81 s~~~r~v~~~l-~~~l~~~~~iv~~sKGie~ 110 (329)
T COG0240 81 SQALREVLRQL-KPLLLKDAIIVSATKGLEP 110 (329)
T ss_pred hHHHHHHHHHH-hhhccCCCeEEEEeccccC
Confidence 43344443322 2457899999999976433
|
|
| >COG2150 Predicted regulator of amino acid metabolism, contains ACT domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.005 Score=58.93 Aligned_cols=66 Identities=11% Similarity=0.287 Sum_probs=56.8
Q ss_pred EecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEE
Q 006212 564 RQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 564 ~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~ 629 (656)
.-.+.||+++.|.++++++||+|......--+-.+++-+.|-++.++|.+++.+|+++++|..+..
T Consensus 101 ~~~~~pgi~A~V~~~iak~gi~Irqi~~~dpe~~~e~~l~IVte~~iP~~li~el~~i~gVk~i~I 166 (167)
T COG2150 101 EDARYPGILAGVASLIAKRGISIRQIISEDPELQEEPKLTIVTERPIPGDLIDELKKIDGVKKISI 166 (167)
T ss_pred ccCCCccHHHHHHHHHHHcCceEEEEecCCcccCCCceEEEEEeccCCHHHHHHHhcccCceeEEe
Confidence 356789999999999999999998776644335677888899999999999999999999988753
|
|
| >PRK14030 glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.022 Score=63.73 Aligned_cols=108 Identities=27% Similarity=0.380 Sum_probs=71.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHH------H------------Hc-CCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA------R------------AV-GVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a------~------------~~-g~~~~ 275 (656)
|.+|.|+||.|=|+|++|+..|+.|..+|.+|++ |||.- +.+.. + .. |.+.+
T Consensus 223 g~~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i 302 (445)
T PRK14030 223 GIDIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFF 302 (445)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEc
Confidence 5679999999999999999999999999999999 88763 32220 0 11 33444
Q ss_pred CHHHHhc-cCCEEEEccCCCccccccccHHHHhcCC-CCc-EEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 276 SFDQALA-TADFISLHMPLNPTTSKIFNDETFAKMK-KGV-RIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 276 ~l~ell~-~aDvV~l~~Plt~~T~~li~~~~l~~mK-~ga-ilINvaRg~ivde~aL~~aL~~g~i 338 (656)
+-++++. +||+.+-|. +.+.|+.+....+. .++ +|+-.|-+ .+..++- +.|.+..|
T Consensus 303 ~~~~~~~~~cDVliPcA-----l~n~I~~~na~~l~~~~ak~V~EgAN~-p~t~eA~-~iL~~rGI 361 (445)
T PRK14030 303 AGKKPWEQKVDIALPCA-----TQNELNGEDADKLIKNGVLCVAEVSNM-GCTAEAI-DKFIAAKQ 361 (445)
T ss_pred CCccceeccccEEeecc-----ccccCCHHHHHHHHHcCCeEEEeCCCC-CCCHHHH-HHHHHCCC
Confidence 4455543 688887776 46678877777662 223 45555556 4444443 34555433
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.005 Score=66.09 Aligned_cols=90 Identities=18% Similarity=0.269 Sum_probs=60.7
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--------CC------ee-cCHHHHh-ccCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------GV------EL-VSFDQAL-ATADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--------g~------~~-~~l~ell-~~aDvV~l~~Pl 293 (656)
+|+|||.|.+|..+|..|...|.+|..|+++.. .+...+. +. .. .++++.+ ..+|+|++++|
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavk- 80 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVP- 80 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeC-
Confidence 699999999999999999999999999998642 1111111 11 11 2566666 58999999999
Q ss_pred CccccccccHHHHh-cCCCCcEEEEcCCCc
Q 006212 294 NPTTSKIFNDETFA-KMKKGVRIVNVARGG 322 (656)
Q Consensus 294 t~~T~~li~~~~l~-~mK~gailINvaRg~ 322 (656)
...+..++.. ... .+++++.++.+..|=
T Consensus 81 s~~~~~~l~~-l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 81 TQQLRTICQQ-LQDCHLKKNTPILICSKGI 109 (326)
T ss_pred HHHHHHHHHH-HHHhcCCCCCEEEEEEcCe
Confidence 3334444432 222 466777777776653
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.015 Score=59.27 Aligned_cols=95 Identities=28% Similarity=0.316 Sum_probs=61.9
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCC-------Ch-hH---HHHc-CCee------cCHHHHh-ccC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA-------PA-DK---ARAV-GVEL------VSFDQAL-ATA 284 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~-------~~-~~---a~~~-g~~~------~~l~ell-~~a 284 (656)
.+|.|+++.|.|||++|+.+|+.|...|.+|++ .|.+. +. +. ..+. ++.. .+-++++ .+|
T Consensus 19 ~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 98 (217)
T cd05211 19 DSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDV 98 (217)
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccc
Confidence 568999999999999999999999999997766 45432 11 11 1111 1211 1223333 379
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
|+++-|.+.+ .++.+....++ -.+|+-.+-+++-+
T Consensus 99 DVlipaA~~~-----~i~~~~a~~l~-a~~V~e~AN~p~t~ 133 (217)
T cd05211 99 DIFAPCALGN-----VIDLENAKKLK-AKVVAEGANNPTTD 133 (217)
T ss_pred cEEeeccccC-----ccChhhHhhcC-ccEEEeCCCCCCCH
Confidence 9999988733 57777777776 33555556666654
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0099 Score=64.08 Aligned_cols=86 Identities=26% Similarity=0.252 Sum_probs=62.9
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh-h-HHH----HcCCe---ecCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..+..+. ..+. +|.+||++... + .+. ..++. +.+++++++++|+|+.|+|..
T Consensus 126 ~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~-- 203 (325)
T PRK08618 126 DAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAK-- 203 (325)
T ss_pred CCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCC--
Confidence 4679999999999999888765 4564 78889987522 1 222 22443 347899999999999999844
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaR 320 (656)
..++. +.+|+|+.++.+|.
T Consensus 204 -~p~i~----~~l~~G~hV~~iGs 222 (325)
T PRK08618 204 -TPVFS----EKLKKGVHINAVGS 222 (325)
T ss_pred -CcchH----HhcCCCcEEEecCC
Confidence 34453 44699999998875
|
|
| >CHL00100 ilvH acetohydroxyacid synthase small subunit | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0037 Score=61.41 Aligned_cols=74 Identities=12% Similarity=0.218 Sum_probs=59.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEee
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
|.+-+...|+||++.+|+.+|...|+||.++.+......+.+=|.+.++.. .-+.+.++|.++-++.+|..+.-
T Consensus 3 ~~isvlv~n~PGVL~RIt~lFsrRg~NIesLsv~~t~~~~~sr~TIvv~~~~~~ieqL~kQL~KLidVl~V~~~~~ 78 (174)
T CHL00100 3 HTLSVLVEDESGVLTRIAGLFARRGFNIESLAVGPAEQKGISRITMVVPGDDRTIEQLTKQLYKLVNILKVQDITN 78 (174)
T ss_pred EEEEEEEeCcCCHHHHHHHHHHhCCCCeeEEEeeEcCCCCccEEEEEEECCHHHHHHHHHHHHHHhHhhEEEecCC
Confidence 677788899999999999999999999999999876666666666666654 34578888888888888776643
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0074 Score=66.12 Aligned_cols=91 Identities=18% Similarity=0.277 Sum_probs=61.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC-------CEEEEECCCCC------hhHHHHc--------CC------ee-cCHHHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP------ADKARAV--------GV------EL-VSFDQA 280 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G-------~~Vi~~d~~~~------~~~a~~~--------g~------~~-~~l~el 280 (656)
-++|+|||.|..|.++|..+..-| .+|..|.+... .+...+. |+ .. .+++++
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~ea 90 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEA 90 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHH
Confidence 358999999999999999997544 78888765532 1111110 11 22 378899
Q ss_pred hccCCEEEEccCCCccccccccHHHHh--cCCCCcEEEEcCCC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETFA--KMKKGVRIVNVARG 321 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l~--~mK~gailINvaRg 321 (656)
+++||+|++++| ....+.++.. .-. .+++++++|+++.|
T Consensus 91 v~~aDiIvlAVP-sq~l~~vl~~-l~~~~~l~~~~~iIS~aKG 131 (365)
T PTZ00345 91 VEDADLLIFVIP-HQFLESVLSQ-IKENNNLKKHARAISLTKG 131 (365)
T ss_pred HhcCCEEEEEcC-hHHHHHHHHH-hccccccCCCCEEEEEeCC
Confidence 999999999999 3333333322 212 35667899999876
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.011 Score=63.66 Aligned_cols=92 Identities=20% Similarity=0.281 Sum_probs=59.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCChhHHHHc---------CC----ee-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~ 291 (656)
+..++|+|||.|.+|..+|..+...| .++..||.......+..+ +. .. .+++ .+++||+|+++.
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 45679999999999999999988777 689999986532111111 11 11 2555 779999999999
Q ss_pred --CCCcc-cc--------cccc--HHHHhcCCCCcEEEEcC
Q 006212 292 --PLNPT-TS--------KIFN--DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 --Plt~~-T~--------~li~--~~~l~~mK~gailINva 319 (656)
|..+. ++ .++. .+.+....|.+++++++
T Consensus 82 g~~~~~g~~r~dll~~n~~i~~~i~~~i~~~~p~a~vivvs 122 (319)
T PTZ00117 82 GVQRKEEMTREDLLTINGKIMKSVAESVKKYCPNAFVICVT 122 (319)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 43331 11 1110 12233346778888885
|
|
| >cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0073 Score=47.36 Aligned_cols=66 Identities=9% Similarity=0.327 Sum_probs=49.2
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC---CHHHHHHHhcCCCccEEE
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---NQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~---~~e~l~~L~~~~~V~~v~ 628 (656)
-+...|+||.++.+...|+++++||.++...... ++...+.+.++..- -..+++.|+++++|..+.
T Consensus 2 ~v~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~~v~ 70 (71)
T cd04876 2 RVEAIDRPGLLADITTVIAEEKINILSVNTRTDD-DGLATIRLTLEVRDLEHLARIMRKLRQIPGVIDVR 70 (71)
T ss_pred EEEEeccCcHHHHHHHHHHhCCCCEEEEEeEECC-CCEEEEEEEEEECCHHHHHHHHHHHhCCCCcEEEE
Confidence 3567899999999999999999999999886432 34455555554332 237788889888887653
|
ACT_RelA-SpoT: the ACT domain found C-terminal of the RelA/SpoT domains. Enzymes of the Rel/Spo family enable bacteria to survive prolonged periods of nutrient limitation by controlling guanosine-3'-diphosphate-5'-(tri)diphosphate ((p)ppGpp) production and subsequent rRNA repression (stringent response). Both the synthesis of (p)ppGpp from ATP and GDP(GTP), and its hydrolysis to GDP(GTP) and pyrophosphate, are catalyzed by Rel/Spo proteins. In Escherichia coli and its close relatives, the metabolism of (p)ppGpp is governed by two homologous proteins, RelA and SpoT. The RelA protein catalyzes (p)ppGpp synthesis in a reaction requiring its binding to ribosomes bearing codon-specified uncharged tRNA. The major role of the SpoT protein is the breakdown of (p)ppGpp by a manganese-dependent (p)ppGpp pyrophosphohydrolase activity. Although the stringent response appears to be tightly regulated by these two enzymes i |
| >cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.0071 Score=51.09 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=43.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec----cCccEEEEEEeCCCC--CH-HHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDEEP--NQ-DSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~----~gg~al~~i~~D~~~--~~-e~l~~L~~~ 621 (656)
+.+..+|+||++++|+..|+++++||.+++..... ..+.-.|+++++-+. +. ++.+.|+.+
T Consensus 2 l~v~g~D~~Giv~~it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~l~~~l~~l 69 (81)
T cd04869 2 VEVVGNDRPGIVHEVTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPAGTDLDALREELEEL 69 (81)
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999999999996543 223445555555442 33 555555554
|
This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in |
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.011 Score=63.92 Aligned_cols=85 Identities=18% Similarity=0.295 Sum_probs=61.1
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCCh-hH-HHH----cCC--e-ecCHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-DK-ARA----VGV--E-LVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~~-~~-a~~----~g~--~-~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|.+|+..++.+.. .+. +|.+||++... +. +.+ .++ . ..+++++++ +|+|++|+|.+
T Consensus 129 ~~~vgiiG~G~qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~--- 204 (326)
T PRK06046 129 SKVVGIIGAGNQARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR--- 204 (326)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---
Confidence 4689999999999999998874 455 56778988622 22 222 243 2 237899887 99999999854
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
..++..+. +|+|+.|..+|.
T Consensus 205 ~P~~~~~~---l~~g~hV~~iGs 224 (326)
T PRK06046 205 KPVVKAEW---IKEGTHINAIGA 224 (326)
T ss_pred CcEecHHH---cCCCCEEEecCC
Confidence 35666554 589999888874
|
|
| >PLN02477 glutamate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.1 Score=58.17 Aligned_cols=107 Identities=28% Similarity=0.335 Sum_probs=68.5
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-EC-------CCC-ChhHHHH----c-------CCeecCHHHH-hc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKARA----V-------GVELVSFDQA-LA 282 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d-------~~~-~~~~a~~----~-------g~~~~~l~el-l~ 282 (656)
|.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .| |.- +.+...+ . +.+.++.+++ ..
T Consensus 201 g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~~G~iy~~~GLD~~~L~~~k~~~g~l~~~~~a~~i~~~e~l~~ 280 (410)
T PLN02477 201 GKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDITGAVKNENGLDIPALRKHVAEGGGLKGFPGGDPIDPDDILVE 280 (410)
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCchhccccceEecCccceec
Confidence 5689999999999999999999999999999995 34 331 2222111 0 1123344444 34
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+||+++-|. ..+.|+++...++| -.+|+-.+-+.+ ..++ -+.|++..|
T Consensus 281 ~~DvliP~A-----l~~~I~~~na~~i~-ak~I~egAN~p~-t~ea-~~~L~~rGI 328 (410)
T PLN02477 281 PCDVLIPAA-----LGGVINKENAADVK-AKFIVEAANHPT-DPEA-DEILRKKGV 328 (410)
T ss_pred cccEEeecc-----ccccCCHhHHHHcC-CcEEEeCCCCCC-CHHH-HHHHHHCCc
Confidence 788887765 34567887777774 346666666776 3333 244555444
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0068 Score=58.60 Aligned_cols=68 Identities=19% Similarity=0.236 Sum_probs=51.1
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC-Ceec--CH-HHHhccCCEEEEccC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG-VELV--SF-DQALATADFISLHMP 292 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g-~~~~--~l-~ell~~aDvV~l~~P 292 (656)
..+|.|++|.|||-|.+|...++.|...|.+|.+++|....+.. +++ +.+. .+ ++-+.++|+|+.++.
T Consensus 8 ~l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIsp~~~~~l~-~l~~i~~~~~~~~~~dl~~a~lViaaT~ 79 (157)
T PRK06719 8 MFNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVSPEICKEMK-ELPYITWKQKTFSNDDIKDAHLIYAATN 79 (157)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCccCHHHH-hccCcEEEecccChhcCCCceEEEECCC
Confidence 46899999999999999999999999999999999887544332 232 2221 12 234678898888776
|
|
| >cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0071 Score=49.52 Aligned_cols=62 Identities=18% Similarity=0.326 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHHhc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEIGK 620 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L~~ 620 (656)
+.+-+..+|+||.+++++.+|+++++||..+...+...+..+.+.+.++.+ -.+.+.+.|++
T Consensus 2 ~~~~v~~~d~~G~L~~l~~~l~~~~i~i~~~~~~~~~~~~~~~~~i~v~~~~~~~~~~~~L~~ 64 (69)
T cd04909 2 YDLYVDVPDEPGVIAEVTQILGDAGISIKNIEILEIREGIGGILRISFKTQEDRERAKEILKE 64 (69)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCceeeEeEEeecCCcEEEEEEECCHHHHHHHHHHHHH
Confidence 567778899999999999999999999999987765423356666766532 22366666655
|
The C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback-inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00670 asp_carb_tr aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.076 Score=56.78 Aligned_cols=64 Identities=22% Similarity=0.387 Sum_probs=51.2
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCCC---Ch---hHHHHcCCee---cCHHHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA---PA---DKARAVGVEL---VSFDQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l 289 (656)
.+.|++|+++|-| ++..+++..+..+|++|....|.. +. +.+++.|..+ .++++.++.||+|..
T Consensus 147 ~l~g~~va~vGD~~~~~v~~Sl~~~~a~~g~~v~~~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~~a~~~aDvvyt 222 (301)
T TIGR00670 147 RLDGLKIALVGDLKYGRTVHSLAEALTRFGVEVYLISPEELRMPKEILEELKAKGIKVRETESLEEVIDEADVLYV 222 (301)
T ss_pred CCCCCEEEEEccCCCCcHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHcCCEEEEECCHHHHhCCCCEEEE
Confidence 4789999999995 999999999999999999987753 22 2334456543 489999999999987
|
Ornithine carbamoyltransferases are in the same superfamily and form an outgroup. |
| >PRK04435 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.012 Score=56.25 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=58.0
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC----HHHHHHHhcCCCccEEEEEe
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN----QDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~----~e~l~~L~~~~~V~~v~~v~ 631 (656)
+..-.|.+...|+||+++.|.+.|+++++||-.++.... .++.+-+.+.++.... .+++++|+++++|.+|+++.
T Consensus 67 ~r~vtL~i~l~Dr~GlLs~Il~~IA~~~aNIltI~q~i~-~~g~a~vs~tVevs~~~~~L~~Li~~L~~i~gV~~V~i~~ 145 (147)
T PRK04435 67 GKIITLSLLLEDRSGTLSKVLNVIAEAGGNILTINQSIP-LQGRANVTISIDTSSMEGDIDELLEKLRNLDGVEKVELIG 145 (147)
T ss_pred CcEEEEEEEEecCCCHHHHHHHHHHHcCCCeEEEEEEcC-CCCEEEEEEEEEeCChHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 334456678899999999999999999999999986432 2455555555554322 38999999999999999875
Q ss_pred e
Q 006212 632 V 632 (656)
Q Consensus 632 l 632 (656)
.
T Consensus 146 ~ 146 (147)
T PRK04435 146 M 146 (147)
T ss_pred c
Confidence 3
|
|
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0085 Score=60.23 Aligned_cols=92 Identities=25% Similarity=0.321 Sum_probs=63.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC---C-ChhH----HHHcC-----------------Cee----
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY---A-PADK----ARAVG-----------------VEL---- 274 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~---~-~~~~----a~~~g-----------------~~~---- 274 (656)
..|..++|+|+|.|.+|..+|+.|...|. ++..+|+. . ...+ ..+.| +..
T Consensus 17 ~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~l~~inp~~~i~~~~ 96 (200)
T TIGR02354 17 QKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKENISEINPYTEIEAYD 96 (200)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHHHHHHCCCCEEEEee
Confidence 35789999999999999999999999998 69988875 1 0000 01111 111
Q ss_pred -----cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 006212 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 275 -----~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailIN 317 (656)
.+++++++++|+|+-| ..+.+++.++.......+++..++..
T Consensus 97 ~~i~~~~~~~~~~~~DlVi~a-~Dn~~~k~~l~~~~~~~~~~~~ii~~ 143 (200)
T TIGR02354 97 EKITEENIDKFFKDADIVCEA-FDNAEAKAMLVNAVLEKYKDKYLIAA 143 (200)
T ss_pred eeCCHhHHHHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHcCCCcEEEE
Confidence 0244567788888877 45667787777777777776665553
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0085 Score=63.44 Aligned_cols=69 Identities=22% Similarity=0.242 Sum_probs=51.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC-----Ceec---CHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG-----VELV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g-----~~~~---~l~ell~~aDvV~l~~Plt 294 (656)
.+.+|++.|+|.|..|++++..|...|+ +|..+|++... ..+...+ .... ++.+.++++|+|+.|+|.-
T Consensus 124 ~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~G 203 (284)
T PRK12549 124 DASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTG 203 (284)
T ss_pred CccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCC
Confidence 4568999999999999999999999997 79999987522 2222221 1222 3455778899999999854
|
|
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.0078 Score=64.59 Aligned_cols=88 Identities=25% Similarity=0.305 Sum_probs=53.2
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCC-hhH----HHHcCCee---cCHHHHhccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAP-ADK----ARAVGVEL---VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~-~~~----a~~~g~~~---~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
+++||||.|..|+.-++.+.. ++. +|.+|+++.. .+. ..+.++.. .+.++++++||+|+.|+|.+..+ -
T Consensus 129 ~~l~viGaG~QA~~~~~a~~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P 207 (313)
T PF02423_consen 129 RTLGVIGAGVQARWHLRALAAVRPIKEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-P 207 (313)
T ss_dssp -EEEEE--SHHHHHHHHHHHHHS--SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-E
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCceEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-c
Confidence 589999999999999998874 554 7999999852 111 12234432 37999999999999999865432 5
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg 321 (656)
++..+ .+|||+.|+.++..
T Consensus 208 ~~~~~---~l~~g~hi~~iGs~ 226 (313)
T PF02423_consen 208 VFDAE---WLKPGTHINAIGSY 226 (313)
T ss_dssp SB-GG---GS-TT-EEEE-S-S
T ss_pred cccHH---HcCCCcEEEEecCC
Confidence 66655 46899999888754
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0051 Score=52.13 Aligned_cols=47 Identities=15% Similarity=0.224 Sum_probs=37.3
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
.|.+..+|+||+++.|++.|+++|.||.+.+.... ++.-.|++.++-
T Consensus 3 iltv~g~Dr~GiVa~vs~~la~~g~nI~d~~q~~~--~~~F~m~~~~~~ 49 (77)
T cd04893 3 VISALGTDRPGILNELTRAVSESGCNILDSRMAIL--GTEFALTMLVEG 49 (77)
T ss_pred EEEEEeCCCChHHHHHHHHHHHcCCCEEEceeeEE--cCEEEEEEEEEe
Confidence 35567899999999999999999999999999873 455555555543
|
This CD includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR int |
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0084 Score=67.57 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=69.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-h-----hHHHHcCCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-A-----DKARAVGVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
-+.+++|+|+|+|..|.++|+.|+..|++|.++|.... . ....+.|+.+. ...+.+.++|+|+.. |.-+.
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~S-pgi~~ 89 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKT-PSMRI 89 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEEC-CCCCC
Confidence 46689999999999999999999999999999997642 1 23455677553 234556889999886 65543
Q ss_pred ccccc-----------cHH-HHhcCCC-CcEEEEcCCCchhcHHHHHHhHhc
Q 006212 297 TSKIF-----------NDE-TFAKMKK-GVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~li-----------~~~-~l~~mK~-gailINvaRg~ivde~aL~~aL~~ 335 (656)
+...+ ++- .+.+..+ ..+-|--+.|+--..+-+...|+.
T Consensus 90 ~~p~~~~a~~~~i~i~s~~e~~~~~~~~~vIaITGTnGKTTT~~ll~~iL~~ 141 (458)
T PRK01710 90 DSPELVKAKEEGAYITSEMEEFIKYCPAKVFGVTGSDGKTTTTTLIYEMLKE 141 (458)
T ss_pred CchHHHHHHHcCCcEEechHHhhhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 33222 221 2222222 233333345777655555666654
|
|
| >PRK00676 hemA glutamyl-tRNA reductase; Validated | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.011 Score=64.02 Aligned_cols=90 Identities=12% Similarity=0.046 Sum_probs=58.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.+.||++.|||.|.||+.+|+.|...|. +|++.+|........... ...-+...++|+|+.|.--|......+..+
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~~~~~~~~~---~~~~~~~~~~DvVIs~t~~Tas~~p~i~~~ 247 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQLTLPYRTVV---REELSFQDPYDVIFFGSSESAYAFPHLSWE 247 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCccccchhhhh---hhhhhcccCCCEEEEcCCcCCCCCceeeHH
Confidence 4889999999999999999999999985 689999875211111000 011144579999998743233333445555
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
.+...++ -+++|.+
T Consensus 248 ~~~~~~~-r~~iDLA 261 (338)
T PRK00676 248 SLADIPD-RIVFDFN 261 (338)
T ss_pred HHhhccC-cEEEEec
Confidence 5544332 3777775
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.0086 Score=64.66 Aligned_cols=65 Identities=29% Similarity=0.370 Sum_probs=48.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-C------HHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-S------FDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~------l~ell~~aDvV~l~~P 292 (656)
.|++|+|+|+|-.|..-.+.++++|++|+++|+.. ..+.++++|...+ + ++.+-+.+|+|+.++|
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~ 238 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG 238 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC
Confidence 38999999999999999999999999999999987 4567788876321 1 1222222666666665
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.017 Score=62.06 Aligned_cols=86 Identities=16% Similarity=0.241 Sum_probs=63.7
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-hH----HHHcCCee--c-CHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-DK----ARAVGVEL--V-SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~~----a~~~g~~~--~-~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-++++|||.|..++.-++.+.. +. -+|.+||++... +. ..+.++.. + +.++++++||+|+.|+|. +.
T Consensus 128 ~~~l~iiG~G~qA~~~~~a~~~v~~i~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s---~~ 204 (315)
T PRK06823 128 VSAIGIVGTGIQARMQLMYLKNVTDCRQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPS---RE 204 (315)
T ss_pred CCEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCC---CC
Confidence 5799999999999999988763 33 489999998632 21 22224433 3 789999999999999873 34
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
-++..+. +|||+.|+.+|.
T Consensus 205 P~~~~~~---l~~G~hi~~iGs 223 (315)
T PRK06823 205 PLLQAED---IQPGTHITAVGA 223 (315)
T ss_pred ceeCHHH---cCCCcEEEecCC
Confidence 6676554 689999988874
|
|
| >cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.0088 Score=49.97 Aligned_cols=49 Identities=20% Similarity=0.215 Sum_probs=38.4
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
+.+..+|+||++++|+..|.++|+||.+++......++.-.|+++++-+
T Consensus 2 i~v~g~D~~Giv~~it~~l~~~g~nI~~~~~~~~~~~~~f~~~~~~~~~ 50 (74)
T cd04875 2 LTLSCPDRPGIVAAVSGFLAEHGGNIVESDQFVDPDSGRFFMRVEFELE 50 (74)
T ss_pred EEEEcCCCCCHHHHHHHHHHHcCCCEEeeeeeecCCCCeEEEEEEEEeC
Confidence 4567899999999999999999999999998754444445555565544
|
This CD includes the N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) which catalyzes the hydrolysis of 10-formyltetrahydrofolate (formyl-FH4) to FH4 and formate. Formyl-FH4 hydrolase generates the formate that is used by purT-encoded 5'-phosphoribosylglycinamide transformylase for step three of de novo purine nucleotide synthesis. Formyl-FH4 hydrolase, a hexamer which is activated by methionine and inhibited by glycine, is proposed to regulate the balance FH4 and C1-FH4 in response to changing growth conditions. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.0048 Score=58.29 Aligned_cols=107 Identities=17% Similarity=0.227 Sum_probs=70.2
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--------------C-HHHHhccCCEEEEccCCCcc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------------S-FDQALATADFISLHMPLNPT 296 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--------------~-l~ell~~aDvV~l~~Plt~~ 296 (656)
|.|+|.|.||.-+|.+|+..|.+|..+++....+...+.|+... . ..+....+|+|++|+... +
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa~-~ 79 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSPRLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKAY-Q 79 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHHHHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSGG-G
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccccHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEeccc-c
Confidence 68999999999999999989999999987653333444554321 1 124678899999999733 3
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
+...+.. .-..+++++.++-.--| +-.++.+.+.+...++.++
T Consensus 80 ~~~~l~~-l~~~~~~~t~iv~~qNG-~g~~~~l~~~~~~~~v~~g 122 (151)
T PF02558_consen 80 LEQALQS-LKPYLDPNTTIVSLQNG-MGNEEVLAEYFPRPRVLGG 122 (151)
T ss_dssp HHHHHHH-HCTGEETTEEEEEESSS-SSHHHHHHCHSTGSGEEEE
T ss_pred hHHHHHH-HhhccCCCcEEEEEeCC-CCcHHHHHHHcCCCcEEEE
Confidence 4444433 33445666666655444 4346777666655566553
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >PRK00779 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.11 Score=55.81 Aligned_cols=93 Identities=20% Similarity=0.257 Sum_probs=63.5
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--Ch-hH----HHHcCCe--e-cCHHHHhccCCEEEEcc----
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--PA-DK----ARAVGVE--L-VSFDQALATADFISLHM---- 291 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~~-~~----a~~~g~~--~-~~l~ell~~aDvV~l~~---- 291 (656)
+.|++|+++|= +++.++++..+..+|++|....|.. .. +. +++.|.. . .++++.+++||+|..-.
T Consensus 150 l~gl~i~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w~~~ 229 (304)
T PRK00779 150 LKGLKVAWVGDGNNVANSLLLAAALLGFDLRVATPKGYEPDPEIVEKIAKETGASIEVTHDPKEAVKGADVVYTDVWVSM 229 (304)
T ss_pred cCCcEEEEEeCCCccHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEecCcccc
Confidence 77999999998 7899999999999999999988753 21 22 3445643 2 48999999999998742
Q ss_pred CCCc---c-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNP---T-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~---~-----T~~li~~~~l~~mK~gailINva 319 (656)
.... + -..-++++.++.+|++++|.-|.
T Consensus 230 ~~~~~~~~~~~~~~~y~v~~~~l~~~~~~~ivmHpl 265 (304)
T PRK00779 230 GQEAEAEERLKAFAPYQVNEELMALAKPDAIFMHCL 265 (304)
T ss_pred ccchhHHHHHHHhcccCCCHHHHHhcCCCeEEecCC
Confidence 1000 0 12234555566666666666554
|
|
| >PRK01713 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.079 Score=57.50 Aligned_cols=94 Identities=19% Similarity=0.271 Sum_probs=65.0
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||=+ ++..+++..+..+|++|....|.. +.+ .+...|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvVyt~ 232 (334)
T PRK01713 153 PLSEISYVYIGDARNNMGNSLLLIGAKLGMDVRICAPKALLPEASLVEMCEKFAKESGARITVTDDIDKAVKGVDFVHTD 232 (334)
T ss_pred CcCCcEEEEECCCccCHHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 578888888999999999988753 211 12334643 2 4899999999999873
Q ss_pred c----CCCcc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006212 291 M----PLNPT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 291 ~----Plt~~---------T~~li~~~~l~~m-K~gailINva 319 (656)
+ ....+ ....++.+.++.+ |++++|.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~k~~aivmH~l 275 (334)
T PRK01713 233 VWVSMGEPLETWGERIKLLMPYQVTPELMKRTGNPKVKFMHCL 275 (334)
T ss_pred ceeecccchhhHHHHHHhccCCcCCHHHHhccCCCCCEEECCC
Confidence 2 10000 1123566777765 6788887775
|
|
| >cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.011 Score=49.72 Aligned_cols=61 Identities=16% Similarity=0.217 Sum_probs=40.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCH-HHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ-DSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~-e~l~~L~~~ 621 (656)
+-+.-+|+||+++.|+..|+++|+||.+++.......=...+.+.++...+. ++.+.|..+
T Consensus 2 vtv~G~DrpGiv~~vt~~la~~~~nI~dl~~~~~~~~f~~~~~v~~p~~~~~~~l~~~l~~l 63 (75)
T cd04870 2 ITVTGPDRPGLTSALTEVLAAHGVRILDVGQAVIHGRLSLGILVQIPDSADSEALLKDLLFK 63 (75)
T ss_pred EEEEcCCCCCHHHHHHHHHHHCCCCEEecccEEEcCeeEEEEEEEcCCCCCHHHHHHHHHHH
Confidence 3456799999999999999999999999975443311223344555544333 444444443
|
The ACT_PSP_1 CD includes the first of the two ACT domains found N-terminal of phosphoserine phosphatase (PSP, SerB). PSPs belong to the L-2-haloacid dehalogenase-like protein superfamily. PSP is involved in serine metabolism; serine is synthesized from phosphoglycerate through sequential reactions catalyzed by 3-phosphoglycerate dehydrogenase (SerA), 3-phosphoserine aminotransferase (SerC), and SerB. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.016 Score=63.92 Aligned_cols=89 Identities=17% Similarity=0.174 Sum_probs=64.0
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CC--CEEEEECCCCCh-h-HH---HH-c-C---Cee-cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LG--MNVIAHDPYAPA-D-KA---RA-V-G---VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G--~~Vi~~d~~~~~-~-~a---~~-~-g---~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
-++++|||.|..++.-++.+.. +. -+|.+||++... + .+ .+ . | +.. .+.++++++||+|+.|++.+
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~ 234 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGE 234 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCC
Confidence 4789999999999999988775 42 489999998632 1 11 11 1 2 223 37999999999999999854
Q ss_pred c---cccccccHHHHhcCCCCcEEEEcCC
Q 006212 295 P---TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~---~T~~li~~~~l~~mK~gailINvaR 320 (656)
. .+.-++..+. +|||+.|+.++.
T Consensus 235 ~~~~s~~Pv~~~~~---lkpG~hv~~ig~ 260 (379)
T PRK06199 235 TGDPSTYPYVKREW---VKPGAFLLMPAA 260 (379)
T ss_pred CCCCCcCcEecHHH---cCCCcEEecCCc
Confidence 3 3446776554 589998876654
|
|
| >cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.011 Score=49.12 Aligned_cols=61 Identities=16% Similarity=0.127 Sum_probs=42.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCCCCC---HHHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPN---QDSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~~~~---~e~l~~L~~~ 621 (656)
+-+..+|+||.+++++++|+++|+||-.+...+.. ..+.....+.++.+.+ +++++.|++.
T Consensus 2 l~v~~~d~pG~L~~l~~~i~~~g~nI~~i~~~~~~~~~~~~~~~v~v~~e~~~~~~~i~~~L~~~ 66 (72)
T cd04884 2 FTFLLEDKPGTLKPVVDTLREFNARIISILTAFEDAPDGMRRVFIRVTPMDRSKENELIEELKAK 66 (72)
T ss_pred EEEEecCCCccHHHHHHHHHHCCCeEEEEEeccccCCCCccEEEEEEEEecchHHHHHHHHHhCc
Confidence 34578999999999999999999999999887652 2333444555544434 2666666543
|
This CD includes the C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria. This protein has two N-terminal tandem CBS domains and a single C-terminal ACT domain. The CBS domain is found in a wide range of proteins, often in tandem arrangements and together with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR00658 orni_carb_tr ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.13 Score=54.99 Aligned_cols=93 Identities=24% Similarity=0.279 Sum_probs=63.2
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hhH-------HHHcCCe---ecCHHHHhccCCEEEEcc-
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK-------ARAVGVE---LVSFDQALATADFISLHM- 291 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~- 291 (656)
+.|.+|+++|- +++-++++..+..||++|....|.. . ... +.+.|.. ..++++.+++||+|..-.
T Consensus 146 l~g~~v~~vGd~~~v~~Sl~~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvy~~~w 225 (304)
T TIGR00658 146 LKGVKVVYVGDGNNVCNSLMLAGAKLGMDVVVATPEGYEPDADIVKKAQEIAKENGGSVELTHDPVEAVKGADVIYTDVW 225 (304)
T ss_pred CCCcEEEEEeCCCchHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEcCc
Confidence 78999999997 6888999999999999999987753 2 111 2334542 248999999999998842
Q ss_pred -CCCcc----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 -PLNPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 -Plt~~----------T~~li~~~~l~~mK~gailINva 319 (656)
....+ ....++++.++.+|+++++.-|.
T Consensus 226 ~~~~~~~~~~~~~~~~~~y~l~~~~l~~~~~~~ivmHpl 264 (304)
T TIGR00658 226 VSMGEEDKKEERLKLFRPYQVNEELMELAKPEVIFMHCL 264 (304)
T ss_pred ccCccccccHHHHHHhcCCcCCHHHHhhcCCCCEEECCC
Confidence 11110 12245666666666666666664
|
Most OTCases are homotrimers, but the homotrimers are organized into dodecamers built from four trimers in at least two species; the catabolic OTCase of Pseudomonas aeruginosa is allosterically regulated, while OTCase of the extreme thermophile Pyrococcus furiosus shows both allostery and thermophily. |
| >cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.011 Score=47.83 Aligned_cols=59 Identities=15% Similarity=0.272 Sum_probs=43.7
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeec---cCccEEEEEEeCCCCCH---HHHHHHhc
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF---RRNHGIMAIGVDEEPNQ---DSLKEIGK 620 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~---~gg~al~~i~~D~~~~~---e~l~~L~~ 620 (656)
.+..+|+||.++.|.++++++++||.++...+.. ..+.+.+.+.++-.-.+ ++++.|++
T Consensus 2 ~v~~~d~~G~L~~i~~~i~~~~~nI~~i~~~~~~~~~~~~~~~~~i~v~~~~~~~l~~l~~~l~~ 66 (73)
T cd04886 2 RVELPDRPGQLAKLLAVIAEAGANIIEVSHDRAFKTLPLGEVEVELTLETRGAEHIEEIIAALRE 66 (73)
T ss_pred EEEeCCCCChHHHHHHHHHHcCCCEEEEEEEeccCCCCCceEEEEEEEEeCCHHHHHHHHHHHHH
Confidence 3567899999999999999999999999886543 24556666666543323 66777665
|
This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.077 Score=57.08 Aligned_cols=103 Identities=17% Similarity=0.086 Sum_probs=70.1
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCCh--------hHH-----------HHcC-------------Ceec-C--HHHHhccC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPA--------DKA-----------RAVG-------------VELV-S--FDQALATA 284 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~--------~~a-----------~~~g-------------~~~~-~--l~ell~~a 284 (656)
||..+|..+...|++|..||++... +.+ ...| +..+ + +.+.+++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 6889999999889999999987621 111 1111 1222 2 55788999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeecc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVF 346 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~ 346 (656)
|+|+-++|...+.+..+-.+..+.++++++|....++ +....|.+.++. .++ .+++.|
T Consensus 81 D~ViEav~E~~~~K~~~f~~l~~~~~~~~ilaSntS~--~~~~~la~~~~~p~r~--~g~Hf~ 139 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALRWLGRHVDADAIIASTTST--FLVTDLQRHVAHPERF--LNAHWL 139 (314)
T ss_pred CEEEECCcCCHHHHHHHHHHHHhhCCCCcEEEEcccc--CCHHHHHhhcCCcccE--EEEecC
Confidence 9999999998888877767777779999999554443 445566555542 344 444443
|
|
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.02 Score=61.76 Aligned_cols=86 Identities=22% Similarity=0.281 Sum_probs=63.8
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCC-hhH-H---HHc-CC--ee-cCHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAP-ADK-A---RAV-GV--EL-VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~-~~~-a---~~~-g~--~~-~~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|..++.-++.++. ++. +|.+|+++.. .+. + .+. +. .. .+.+++++.||+|+.|+|.++
T Consensus 130 a~~laiIGaG~qA~~ql~a~~~v~~~~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~-- 207 (330)
T COG2423 130 ASTLAIIGAGAQARTQLEALKAVRDIREIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE-- 207 (330)
T ss_pred CcEEEEECCcHHHHHHHHHHHhhCCccEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC--
Confidence 4689999999999999999884 454 7899998862 221 2 122 22 23 378999999999999999554
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
-++..+. +|||+.|..+|.
T Consensus 208 -Pil~~~~---l~~G~hI~aiGa 226 (330)
T COG2423 208 -PVLKAEW---LKPGTHINAIGA 226 (330)
T ss_pred -CeecHhh---cCCCcEEEecCC
Confidence 5666655 579999888873
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.024 Score=59.24 Aligned_cols=91 Identities=18% Similarity=0.199 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhcC---CCEEEE-ECCCCChhHHHHcCCeec-CHHHH-hccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIA-HDPYAPADKARAVGVELV-SFDQA-LATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~---G~~Vi~-~d~~~~~~~a~~~g~~~~-~l~el-l~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.+|||||+|.||+.+++.+..- ++++.+ ||+...........+..+ +++++ ....|+|+=|.... -..-+..
T Consensus 3 ~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~~~~~~~l~~ll~~~~DlVVE~A~~~--av~e~~~ 80 (267)
T PRK13301 3 HRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPALAGRVALLDGLPGLLAWRPDLVVEAAGQQ--AIAEHAE 80 (267)
T ss_pred eEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhccCcccCCHHHHhhcCCCEEEECCCHH--HHHHHHH
Confidence 5899999999999999998753 366544 565532211111224444 79997 58899999988722 1111223
Q ss_pred HHHhcCCCCcEEEEcCCCchhc
Q 006212 304 ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivd 325 (656)
.. |+.|.-++=.+=|.+.|
T Consensus 81 ~i---L~~g~dlvv~SvGALaD 99 (267)
T PRK13301 81 GC---LTAGLDMIICSAGALAD 99 (267)
T ss_pred HH---HhcCCCEEEEChhHhcC
Confidence 33 45666666666677776
|
|
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.018 Score=63.47 Aligned_cols=85 Identities=25% Similarity=0.258 Sum_probs=62.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcC---Cee--c------CHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVG---VEL--V------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g---~~~--~------~l~ell~~aDvV~l~~Plt~~ 296 (656)
++|.|||.|.||+.+|..|.+.| .+|++.|+.. ...++.... ++. + .+.+++++.|+|+.|+|..-
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~- 80 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFV- 80 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchh-
Confidence 67999999999999999998877 9999999985 334443332 221 1 36788999999999999542
Q ss_pred ccccccHHHH-hcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETF-AKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l-~~mK~gailINvaR 320 (656)
+...+ +.++-|.-.+|++-
T Consensus 81 -----~~~i~ka~i~~gv~yvDts~ 100 (389)
T COG1748 81 -----DLTILKACIKTGVDYVDTSY 100 (389)
T ss_pred -----hHHHHHHHHHhCCCEEEccc
Confidence 33333 34677888888874
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.03 Score=59.84 Aligned_cols=85 Identities=16% Similarity=0.143 Sum_probs=61.2
Q ss_pred CCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCCh-h-HHHH----cCC--eec-CHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAPA-D-KARA----VGV--ELV-SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~~-~-~a~~----~g~--~~~-~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+++||||.|..|+.-++.+.. +.. +|.+||++... + .+.+ .|+ ..+ ++++++.+||+|+.++|.+
T Consensus 117 a~~l~iiGaG~QA~~~~~a~~~v~~i~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~--- 193 (301)
T PRK06407 117 VENFTIIGSGFQAETQLEGMASVYNPKRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD--- 193 (301)
T ss_pred CcEEEEECCcHHHHHHHHHHHhcCCCCEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---
Confidence 5799999999999998888774 454 79999988632 1 1111 254 333 7999999999999998843
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
..++..+. +|||+.+.-+|
T Consensus 194 ~P~~~~~~---l~pg~hV~aiG 212 (301)
T PRK06407 194 TPIFNRKY---LGDEYHVNLAG 212 (301)
T ss_pred CcEecHHH---cCCCceEEecC
Confidence 46666554 57887766555
|
|
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.026 Score=60.25 Aligned_cols=93 Identities=14% Similarity=0.126 Sum_probs=59.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhH--HHHc-------CC--ee-cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------GV--EL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~--a~~~-------g~--~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|||.|.+|+.+|..|...| .+|..+|+...... +.++ +. .. ..-.+.+++||+|++++...
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~- 79 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP- 79 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC-
Confidence 47999999999999999998888 48999998653221 2211 11 11 12234578999999998743
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 296 ~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
...++- |. ..+.+..|.+++++++ ..+|
T Consensus 80 ~~~g~~R~dll~~N~~i~~~~~~~i~~~~~~~~vivvs--NP~d 121 (306)
T cd05291 80 QKPGETRLDLLEKNAKIMKSIVPKIKASGFDGIFLVAS--NPVD 121 (306)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEec--ChHH
Confidence 222221 11 1233356678888887 4444
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.027 Score=62.60 Aligned_cols=89 Identities=24% Similarity=0.382 Sum_probs=63.8
Q ss_pred ccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCc
Q 006212 226 SLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 226 ~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+.|++|+|+|+ ..-...+++.|...|.+|.+|||..........+ ...++++.++.||.|+++++-.
T Consensus 310 ~~~~~~v~vlGlafK~~t~d~r~sp~~~~~~~L~~~g~~v~~~DP~~~~~~~~~~~-~~~~~~~~~~~ad~~v~~t~~~- 387 (411)
T TIGR03026 310 PLKGKTVLILGLAFKPNTDDVRESPALDIIELLKEKGAKVKAYDPLVPEEEVKGLP-LIDDLEEALKGADALVILTDHD- 387 (411)
T ss_pred cccCCEEEEEeeEecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChhhhhhcc-cCCCHHHHHhCCCEEEEecCCH-
Confidence 589999999998 3467789999999999999999986443322222 1347889999999999999833
Q ss_pred cccccccHHHHhc-CCCCcEEEEc
Q 006212 296 TTSKIFNDETFAK-MKKGVRIVNV 318 (656)
Q Consensus 296 ~T~~li~~~~l~~-mK~gailINv 318 (656)
+-+. ++-+.+.. |+ ..+++|+
T Consensus 388 ~~~~-~~~~~~~~~~~-~~~v~D~ 409 (411)
T TIGR03026 388 EFKD-LDLEKIKDLMK-GKVVVDT 409 (411)
T ss_pred HHhc-cCHHHHHHhcC-CCEEEeC
Confidence 2222 34444443 54 4588885
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.018 Score=64.03 Aligned_cols=67 Identities=19% Similarity=0.226 Sum_probs=46.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH-HHcCCe-ecCHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVE-LVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a-~~~g~~-~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.++|.|||+|.+|.++|+.|+..|++|.++|++...... ...+-. ....+....++|+|+.+.+..+
T Consensus 3 ~~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~~ 71 (418)
T PRK00683 3 LQRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIKK 71 (418)
T ss_pred CCeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCCC
Confidence 478999999999999999999999999999976532110 000001 1123344578999888776543
|
|
| >PLN02527 aspartate carbamoyltransferase | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.18 Score=54.17 Aligned_cols=65 Identities=15% Similarity=0.147 Sum_probs=49.4
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcC-CCEEEEECCCC---Ch---hHHHHcCCee---cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PA---DKARAVGVEL---VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~-G~~Vi~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~ 290 (656)
.+.|+||+++|-+ ++..+++..+..+ |++|....|.. +. +.+++.|..+ .++++.+++||+|..-
T Consensus 148 ~l~g~kva~vGD~~~~rv~~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 225 (306)
T PLN02527 148 RLDGIKVGLVGDLANGRTVRSLAYLLAKYEDVKIYFVAPDVVKMKDDIKDYLTSKGVEWEESSDLMEVASKCDVLYQT 225 (306)
T ss_pred CcCCCEEEEECCCCCChhHHHHHHHHHhcCCCEEEEECCCccCCCHHHHHHHHHcCCEEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999976 6889999998887 99998887743 22 2233445532 4899999999999884
|
|
| >PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2 | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.059 Score=52.12 Aligned_cols=92 Identities=18% Similarity=0.272 Sum_probs=66.1
Q ss_pred CCCEEEEEe--cChhHHHHHHHHhcCCCEEEEECCCC---Ch--h-------HHHHcCC--ee-cCHHHHhccCCEEEEc
Q 006212 228 VGKTLAVMG--FGKVGSEVARRAKGLGMNVIAHDPYA---PA--D-------KARAVGV--EL-VSFDQALATADFISLH 290 (656)
Q Consensus 228 ~gktvGIIG--lG~IG~~vA~~lk~~G~~Vi~~d~~~---~~--~-------~a~~~g~--~~-~~l~ell~~aDvV~l~ 290 (656)
.|+||++|| .+++..+++..+..||+++....|.. +. + .+...|. .. .++++.++++|+|..-
T Consensus 1 ~gl~i~~vGD~~~rv~~Sl~~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~e~l~~aDvvy~~ 80 (158)
T PF00185_consen 1 KGLKIAYVGDGHNRVAHSLIELLAKFGMEVVLIAPEGLRYPPDPEVLEKAKKNAKKNGGKITITDDIEEALKGADVVYTD 80 (158)
T ss_dssp TTEEEEEESSTTSHHHHHHHHHHHHTTSEEEEESSGGGGGSHHHHHHHHHHHHHHHHTTEEEEESSHHHHHTT-SEEEEE
T ss_pred CCCEEEEECCCCChHHHHHHHHHHHcCCEEEEECCCcccCCCCHHHHHHHHHHHHHhCCCeEEEeCHHHhcCCCCEEEEc
Confidence 489999999 38999999999999999999988764 22 1 1222343 33 3899999999999876
Q ss_pred cCCC---cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006212 291 MPLN---PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Plt---~~--------T~~li~~~~l~~mK~gailINva 319 (656)
.-.. .+ ....++++.++.+|+++++.-|.
T Consensus 81 ~~~s~~~~e~~~~~~~~~~y~v~~~~m~~a~~~~i~mH~L 120 (158)
T PF00185_consen 81 RWQSMGDKERFKRLEKFKPYQVTEELMERAKPDAIFMHPL 120 (158)
T ss_dssp SSSCTTSGGHHHHHHHHGGGSBSHHHHHTSSTT-EEEESS
T ss_pred CcccccchHHHHHHHHhcCCccCHHHHHhcCCCcEEEeCC
Confidence 5431 00 01456888888889999999886
|
1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A .... |
| >KOG2304 consensus 3-hydroxyacyl-CoA dehydrogenase [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.0067 Score=61.45 Aligned_cols=174 Identities=23% Similarity=0.254 Sum_probs=99.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cCC------------------e-ecC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VGV------------------E-LVS 276 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g~------------------~-~~~ 276 (656)
.=+.|+|||.|.||..+|+.+...|+.|..+|.+.. ..++.+ .+. + ..+
T Consensus 10 ~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tn 89 (298)
T KOG2304|consen 10 EIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTN 89 (298)
T ss_pred cccceEEEcccccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCC
Confidence 346799999999999999999999999999998752 222211 000 0 113
Q ss_pred HHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC
Q 006212 277 FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS 355 (656)
Q Consensus 277 l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~ 355 (656)
+.++++++|+|+=++-.+-+.+.-+-++.=..+|+.++++ |+++-.+ .++..+++... ..+||+.|.+-|. -
T Consensus 90 v~~~v~dadliiEAivEn~diK~~lF~~l~~~ak~~~il~tNTSSl~l---t~ia~~~~~~s-rf~GlHFfNPvPv---M 162 (298)
T KOG2304|consen 90 VSDAVSDADLIIEAIVENLDIKRKLFKDLDKIAKSSTILATNTSSLSL---TDIASATQRPS-RFAGLHFFNPVPV---M 162 (298)
T ss_pred HHHhhhhhHHHHHHHHHhHHHHHHHHHHHHhhcccceEEeecccceeH---HHHHhhccChh-hhceeeccCCchh---H
Confidence 5567778888776554332222211122222368887764 6655443 44555555532 2378888876654 2
Q ss_pred ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc--CCCCCccccCCCCChhhhhhccchHHHHHHH
Q 006212 356 KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR--GELSATAINAPMVPSEVLSELAPYVVLAKKL 424 (656)
Q Consensus 356 ~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~--g~~~~~~Vn~p~~~~~~~~~l~p~~~laerl 424 (656)
.|. -||=|+..+- +....+.+|-+ |+.+..+-..|-..-.-+ |.||+..|-|+
T Consensus 163 KLv---EVir~~~TS~-----------eTf~~l~~f~k~~gKttVackDtpGFIVNRl--LiPyl~ea~r~ 217 (298)
T KOG2304|consen 163 KLV---EVIRTDDTSD-----------ETFNALVDFGKAVGKTTVACKDTPGFIVNRL--LIPYLMEAIRM 217 (298)
T ss_pred HHh---hhhcCCCCCH-----------HHHHHHHHHHHHhCCCceeecCCCchhhhHH--HHHHHHHHHHH
Confidence 455 4777776422 22333334322 344444444443322222 67888877665
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.03 Score=60.96 Aligned_cols=87 Identities=25% Similarity=0.292 Sum_probs=60.7
Q ss_pred CCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh-h-H---HHHcCCe--e-cCHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA-D-K---ARAVGVE--L-VSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~-~-~---a~~~g~~--~-~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-++++|||.|..++.-++.+. -+.. +|.+|+++... + . ..+.++. . .++++++++||+|+.++|.+ +..
T Consensus 129 a~~l~iiGaG~QA~~~l~a~~~vr~i~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~-~~~ 207 (346)
T PRK07589 129 SRTMALIGNGAQSEFQALAFKALLGIEEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADK-TNA 207 (346)
T ss_pred CcEEEEECCcHHHHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC-CCC
Confidence 468999999999999888766 3454 79999988532 1 1 1222432 2 37999999999999999833 223
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
-++..+. +|||+.|.-+|
T Consensus 208 Pvl~~~~---lkpG~hV~aIG 225 (346)
T PRK07589 208 TILTDDM---VEPGMHINAVG 225 (346)
T ss_pred ceecHHH---cCCCcEEEecC
Confidence 4565543 58998766665
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.039 Score=62.59 Aligned_cols=101 Identities=22% Similarity=0.322 Sum_probs=70.2
Q ss_pred cccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHHH-Hc----------------------C
Q 006212 225 VSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKAR-AV----------------------G 271 (656)
Q Consensus 225 ~~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~-~~----------------------g 271 (656)
..+.|++|+|+|+ ..-...+++.|...|.+|.+|||........ .. +
T Consensus 320 ~~~~~~~VavlGlafK~~tdD~R~Spa~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 399 (473)
T PLN02353 320 NTVSGKKIAVLGFAFKKDTGDTRETPAIDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQ 399 (473)
T ss_pred cccCCCEEEEEeeeecCCCCccccChHHHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccc
Confidence 3689999999998 4467789999999999999999986443221 11 1
Q ss_pred Ceec-CHHHHhccCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCCCchhcHHHH
Q 006212 272 VELV-SFDQALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 272 ~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~-l~~mK~gailINvaRg~ivde~aL 329 (656)
+.+. ++++.++.||+|+++++-. +-+.+ +-+. ...|++..+|+|+ | .++|.+.+
T Consensus 400 ~~~~~~~~~a~~~aD~vvi~t~~~-ef~~l-~~~~~~~~m~~~~~viD~-r-n~l~~~~~ 455 (473)
T PLN02353 400 VSVVWDAYEATKGAHGICILTEWD-EFKTL-DYQKIYDNMQKPAFVFDG-R-NVLDHEKL 455 (473)
T ss_pred eeeeCCHHHHhcCCCEEEECCCCh-Hhccc-CHHHHHHhccCCCEEEEC-C-CCCCHHHH
Confidence 2333 5678999999999999843 33333 4333 4557766689995 4 34466555
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.018 Score=58.44 Aligned_cols=92 Identities=17% Similarity=0.279 Sum_probs=59.8
Q ss_pred EEEEEecChhHHHHHHHHhcC--CCE-EEEECCCCChhH--HHHcCC-eecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL--GMN-VIAHDPYAPADK--ARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~--G~~-Vi~~d~~~~~~~--a~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+|||||+|.||+.+.+.++.- +++ +.+||+...... +...+. ...++++++++.|+++=|... +..+. -
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS~-~Av~e----~ 76 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAASP-EAVRE----Y 76 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCCH-HHHHH----H
Confidence 799999999999999999843 454 677998753322 223333 235799999999999988762 22222 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHH
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~ 327 (656)
..+.||.|.=++=++-|.+.|+.
T Consensus 77 ~~~~L~~g~d~iV~SVGALad~~ 99 (255)
T COG1712 77 VPKILKAGIDVIVMSVGALADEG 99 (255)
T ss_pred hHHHHhcCCCEEEEechhccChH
Confidence 23335565444445556766544
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.028 Score=58.93 Aligned_cols=64 Identities=23% Similarity=0.271 Sum_probs=43.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCChhH-HHHc--CCee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADK-ARAV--GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~~-a~~~--g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|||||+|.||+.+++.+... ++++.+ +++....+. .... ++.. .+++++-.+.|+|+.|+|.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~ 71 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGH 71 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCH
Confidence 4799999999999999999865 566544 343322221 1212 4443 4788885569999999993
|
|
| >PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.0075 Score=50.94 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=38.8
Q ss_pred EEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 563 CRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 563 v~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
+.-+|+||+++.|+..|.++|+||.+++..+....-..++.++.+..-.+++.+.|.+
T Consensus 7 v~G~DrpGiv~~v~~~l~~~g~ni~d~~~~~~~~~f~~~~~v~~~~~~~~~l~~~L~~ 64 (76)
T PF13740_consen 7 VVGPDRPGIVAAVTGVLAEHGCNIEDSRQAVLGGRFTLIMLVSIPEDSLERLESALEE 64 (76)
T ss_dssp EEEE--TTHHHHHHHHHHCTT-EEEEEEEEEETTEEEEEEEEEESHHHHHHHHHHHHH
T ss_pred EEecCCCcHHHHHHHHHHHCCCcEEEEEEEEEcCeEEEEEEEEeCcccHHHHHHHHHH
Confidence 4579999999999999999999999999987654334555666663322234444443
|
|
| >PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.031 Score=57.95 Aligned_cols=107 Identities=31% Similarity=0.437 Sum_probs=68.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEE--------CCCC-ChhHH----HHcCC-------------eecCHH
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--------DPYA-PADKA----RAVGV-------------ELVSFD 278 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~--------d~~~-~~~~a----~~~g~-------------~~~~l~ 278 (656)
.++.|+++.|-|+|.+|+.+|+.|...|++|++. ||.. +.+.. .+.+. ++.+-+
T Consensus 28 ~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 107 (244)
T PF00208_consen 28 DSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEELLRIKEERGSRVDDYPLESPDGAEYIPND 107 (244)
T ss_dssp HSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHHHHHHHHHSSHSTTGTHTCSSTSEEECHH
T ss_pred CCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHHHHHHHHhCCcccccccccccceeEeccc
Confidence 3699999999999999999999999999999875 6543 22211 12222 222332
Q ss_pred -HHh-ccCCEEEEccCCCccccccccHHHHh-cCCCCcEEEEc-CCCchhcHHHHHHhHhcCCe
Q 006212 279 -QAL-ATADFISLHMPLNPTTSKIFNDETFA-KMKKGVRIVNV-ARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 279 -ell-~~aDvV~l~~Plt~~T~~li~~~~l~-~mK~gailINv-aRg~ivde~aL~~aL~~g~i 338 (656)
+++ .+||+++.|.- .+.|+.+... .+|.++.+|=- +-+.+- .++.. .|++..|
T Consensus 108 ~~il~~~~DiliP~A~-----~~~I~~~~~~~~i~~~akiIvegAN~p~t-~~a~~-~L~~rGI 164 (244)
T PF00208_consen 108 DEILSVDCDILIPCAL-----GNVINEDNAPSLIKSGAKIIVEGANGPLT-PEADE-ILRERGI 164 (244)
T ss_dssp CHGGTSSSSEEEEESS-----STSBSCHHHCHCHHTT-SEEEESSSSSBS-HHHHH-HHHHTT-
T ss_pred cccccccccEEEEcCC-----CCeeCHHHHHHHHhccCcEEEeCcchhcc-HHHHH-HHHHCCC
Confidence 555 58999988853 4457777777 67766555544 455554 33333 5665444
|
They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C .... |
| >PTZ00079 NADP-specific glutamate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.12 Score=58.01 Aligned_cols=95 Identities=24% Similarity=0.265 Sum_probs=59.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-EC-------CCC-ChhHH---H-----------H-----cCCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HD-------PYA-PADKA---R-----------A-----VGVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d-------~~~-~~~~a---~-----------~-----~g~~~~ 275 (656)
+.+|.|||+.|=|+|++|+..|+.|..+|.+|++ .| |.- +.+.. . . .+.+++
T Consensus 232 ~~~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~ 311 (454)
T PTZ00079 232 NDSLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYV 311 (454)
T ss_pred CCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEe
Confidence 5679999999999999999999999999999994 34 321 11111 0 0 023333
Q ss_pred CHHHHh-ccCCEEEEccCCCccccccccHHHHhcC-CCCcEEEEcC-CCch
Q 006212 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKM-KKGVRIVNVA-RGGV 323 (656)
Q Consensus 276 ~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~m-K~gailINva-Rg~i 323 (656)
+-++++ -.||+.+-|. +.+.|+.+....+ +.++.+|--+ -+.+
T Consensus 312 ~~~~~~~~~cDI~iPcA-----~~n~I~~~~a~~l~~~~ak~V~EgAN~p~ 357 (454)
T PTZ00079 312 PGKKPWEVPCDIAFPCA-----TQNEINLEDAKLLIKNGCKLVAEGANMPT 357 (454)
T ss_pred CCcCcccCCccEEEecc-----ccccCCHHHHHHHHHcCCeEEEecCCCCC
Confidence 333333 3678777665 4556776666554 4455555444 3443
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0095 Score=54.73 Aligned_cols=85 Identities=19% Similarity=0.366 Sum_probs=50.9
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEE-ECCCC--ChhHHHHc----CCe---ecC-HHHHhccCCEEEEccCCCccc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIA-HDPYA--PADKARAV----GVE---LVS-FDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~-~d~~~--~~~~a~~~----g~~---~~~-l~ell~~aDvV~l~~Plt~~T 297 (656)
+|+||| .|.+|+.+.+.|... .+++.. +++.. ........ +.. ..+ -.+.+.++|+|++|+|... +
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~~-~ 79 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHGA-S 79 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHHH-H
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchhH-H
Confidence 689999 999999999999864 566554 33322 11111111 121 111 2234599999999999332 2
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
.... .. .+++|+.+||.+.
T Consensus 80 ~~~~-~~---~~~~g~~ViD~s~ 98 (121)
T PF01118_consen 80 KELA-PK---LLKAGIKVIDLSG 98 (121)
T ss_dssp HHHH-HH---HHHTTSEEEESSS
T ss_pred HHHH-HH---HhhCCcEEEeCCH
Confidence 2121 11 1588999999973
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.041 Score=59.46 Aligned_cols=82 Identities=21% Similarity=0.218 Sum_probs=58.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCCh-h-HHH----HcCCe---ecCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPA-D-KAR----AVGVE---LVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~-~-~a~----~~g~~---~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+..+..+.. .+ -+|.+|+++... + .+. ..|+. ..++++++.+||+|+.++|..
T Consensus 131 ~~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~-- 208 (330)
T PRK08291 131 DASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSE-- 208 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCC--
Confidence 35799999999999999888874 55 479999987522 2 122 12454 247899999999999999853
Q ss_pred ccccccHHHHhcCCCCcEE
Q 006212 297 TSKIFNDETFAKMKKGVRI 315 (656)
Q Consensus 297 T~~li~~~~l~~mK~gail 315 (656)
..++..+. +|+|+.+
T Consensus 209 -~p~i~~~~---l~~g~~v 223 (330)
T PRK08291 209 -EPILKAEW---LHPGLHV 223 (330)
T ss_pred -CcEecHHH---cCCCceE
Confidence 34555543 5777654
|
|
| >cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.033 Score=46.51 Aligned_cols=59 Identities=12% Similarity=0.263 Sum_probs=44.4
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC----CCCCHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD----EEPNQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D----~~~~~e~l~~L~~ 620 (656)
.+.+..+|+||++++|+.+|.++++||....+... ++..+..+.+. .+.+++.+++|++
T Consensus 3 ri~V~~~D~~Gll~~i~~~l~~~~lnI~sa~i~t~--~~~~~d~f~v~~~~~~~~~~~~~~~l~~ 65 (72)
T cd04926 3 RLELRTEDRVGLLSDVTRVFRENGLTVTRAEISTQ--GDMAVNVFYVTDANGNPVDPKTIEAVRQ 65 (72)
T ss_pred EEEEEECCccCHHHHHHHHHHHCCcEEEEEEEecC--CCeEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56778899999999999999999999999988754 34666666652 2234456666654
|
This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK02255 putrescine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.23 Score=54.01 Aligned_cols=64 Identities=22% Similarity=0.327 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC---ChhH-------HHHcCC--ee-cCHHHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGV--EL-VSFDQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~---~~~~-------a~~~g~--~~-~~l~ell~~aDvV~l 289 (656)
.+.|++|+|||= .++..+++..+..+|++|..+.|.. +.+. +...|. .. .++++.+++||+|..
T Consensus 151 ~l~glkv~~vGD~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~ 228 (338)
T PRK02255 151 KLEDCKVVFVGDATQVCVSLMFIATKMGMDFVHFGPKGYQLPEEHLAIAEENCEVSGGSVLVTDDVDEAVKDADFVYT 228 (338)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHhCCCEEEEECCCccccCHHHHHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEE
Confidence 588999999997 5788888888999999999988753 2111 122353 32 489999999999988
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.024 Score=61.59 Aligned_cols=30 Identities=23% Similarity=0.501 Sum_probs=25.5
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEE-CC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DP 260 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~ 260 (656)
+|||+|+|+||+.+++.+... ++++.+. |+
T Consensus 3 kVaI~G~GrIGr~va~al~~~~d~eLvav~d~ 34 (341)
T PRK04207 3 KVGVNGYGTIGKRVADAVAAQPDMELVGVAKT 34 (341)
T ss_pred EEEEECCCHHHHHHHHHHhcCCCcEEEEEECC
Confidence 799999999999999998854 7898874 53
|
|
| >COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.032 Score=61.39 Aligned_cols=108 Identities=25% Similarity=0.373 Sum_probs=74.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC---------h-----------hHHHHcCCeecCHHHHhc-
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---------A-----------DKARAVGVELVSFDQALA- 282 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~---------~-----------~~a~~~g~~~~~l~ell~- 282 (656)
+..|.|+||.|=|+|+.|+..|+.+...|.+|+++|-... . ......|.+.++-++++.
T Consensus 202 g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~sds~g~i~~~~Gld~~~l~~~~~~~~~v~~~~ga~~i~~~e~~~~ 281 (411)
T COG0334 202 GDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAVSDSKGGIYDEDGLDVEALLELKERRGSVAEYAGAEYITNEELLEV 281 (411)
T ss_pred CCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEEEcCCCceecCCCCCHHHHHHHhhhhhhHHhhcCceEccccccccc
Confidence 4559999999999999999999999988999998754322 0 111122445555566664
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+||+.+=|. +.+.|+.+...++|-. +|+-.+-+++-.+. --..++.|.+
T Consensus 282 ~cDIl~PcA-----~~n~I~~~na~~l~ak-~V~EgAN~P~t~eA-~~i~~erGIl 330 (411)
T COG0334 282 DCDILIPCA-----LENVITEDNADQLKAK-IVVEGANGPTTPEA-DEILLERGIL 330 (411)
T ss_pred cCcEEcccc-----cccccchhhHHHhhhc-EEEeccCCCCCHHH-HHHHHHCCCE
Confidence 799887665 5667888888888766 77777777775332 2222355544
|
|
| >PRK03515 ornithine carbamoyltransferase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.11 Score=56.30 Aligned_cols=65 Identities=26% Similarity=0.316 Sum_probs=50.1
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCC--ee-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGV--EL-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~--~~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++..+++..+..+|+++....|.. +.. .++..|. .. .++++.+++||+|..-
T Consensus 153 ~l~g~~ia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~ea~~~aDvvytd 232 (336)
T PRK03515 153 AFNEMTLAYAGDARNNMGNSLLEAAALTGLDLRLVAPKACWPEAALVTECRALAQKNGGNITLTEDIAEGVKGADFIYTD 232 (336)
T ss_pred CcCCCEEEEeCCCcCcHHHHHHHHHHHcCCEEEEECCchhcCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEec
Confidence 5789999999976 689999999999999999987753 211 1233454 33 4899999999999884
|
|
| >cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.0082 Score=52.00 Aligned_cols=62 Identities=23% Similarity=0.198 Sum_probs=45.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC---C-HHHHHHHhcCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP---N-QDSLKEIGKVP 622 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~---~-~e~l~~L~~~~ 622 (656)
+.+.+..+|+||+++.|++.|+++|+||.+++... .++.-.|.+.++-+. + .++.+.|..+.
T Consensus 2 ~vl~i~g~D~pGiva~vt~~la~~g~nI~~~~~~~--~~~~f~~~~~v~~~~~~~~~~~L~~~l~~l~ 67 (88)
T cd04872 2 AVITVVGKDRVGIVAGVSTKLAELNVNILDISQTI--MDGYFTMIMIVDISESNLDFAELQEELEELG 67 (88)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHcCCCEEechhHh--hCCccEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 35667789999999999999999999999998865 345666666655442 2 34555555554
|
This CD, ACT_1ZPV, includes those single ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein (pdb structure 1ZPV). Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.026 Score=61.42 Aligned_cols=85 Identities=18% Similarity=0.321 Sum_probs=56.1
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCC--ChhHHHHc----C---Cee--cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYA--PADKARAV----G---VEL--VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~--~~~~a~~~----g---~~~--~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|+|. |.+|+.+++.|..+ +.++.. ++... ........ + ..+ .+.++++.++|+|++|+|..
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~- 79 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG- 79 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-
Confidence 47999998 99999999999987 778874 45432 11111111 1 112 25667767899999999943
Q ss_pred cccccccHHHHhc-CCCCcEEEEcCC
Q 006212 296 TTSKIFNDETFAK-MKKGVRIVNVAR 320 (656)
Q Consensus 296 ~T~~li~~~~l~~-mK~gailINvaR 320 (656)
. ..+.... .+.|+.+||.+.
T Consensus 80 ~-----s~~~~~~~~~~G~~VIDlS~ 100 (346)
T TIGR01850 80 V-----SAELAPELLAAGVKVIDLSA 100 (346)
T ss_pred H-----HHHHHHHHHhCCCEEEeCCh
Confidence 2 2333332 367899999984
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.025 Score=64.34 Aligned_cols=66 Identities=21% Similarity=0.196 Sum_probs=50.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec---CHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---SFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~---~l~ell~~aDvV~l~~P 292 (656)
+.|+++.|+|+|.+|.+.++.|+..|.+|+++|... ....+++.|+... ...+.++++|+|+..-.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpG 79 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPG 79 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCC
Confidence 468999999999999999999999999999999653 2233455677553 23456778998877653
|
|
| >COG1707 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.028 Score=54.22 Aligned_cols=71 Identities=10% Similarity=0.186 Sum_probs=58.5
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC-CHHHHHHHhcCCCccEEEEEe
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP-NQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~-~~e~l~~L~~~~~V~~v~~v~ 631 (656)
|-+...++||++..++.+++++|.||...|.+-.+.|..++..+++..-. .+.++++++..+-|.+++...
T Consensus 5 lsi~~enk~GvL~~ltgiiae~ggNIt~~q~~~~~~g~~~~iYmEiEgi~d~e~l~~~lks~d~v~ev~i~~ 76 (218)
T COG1707 5 LSIIAENKPGVLRDLTGIIAEEGGNITYAQQFLEKDGEKALIYMEIEGIDDFEKLLERLKSFDYVIEVEIHR 76 (218)
T ss_pred eEEEeecCccHHHHHHHHHHhcCCceEeeehhhhccCceEEEEEEeeCCCCHHHHHHHhhccceEEEeeecc
Confidence 33456789999999999999999999999998877788899888888764 457888888888777766553
|
|
| >KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.024 Score=60.37 Aligned_cols=92 Identities=20% Similarity=0.307 Sum_probs=58.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-Ch-hHHHHcCCeec--C------HHHHhccCCEEEEccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA-DKARAVGVELV--S------FDQALATADFISLHMPL 293 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~-~~a~~~g~~~~--~------l~ell~~aDvV~l~~Pl 293 (656)
+.. -|+.+||+|+|-+|.--.+.+|+|||+|+++|... .. +..+.+|.+.. + .+++...-|.++-+++.
T Consensus 178 g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~fv~~~~d~d~~~~~~~~~dg~~~~v~~ 256 (360)
T KOG0023|consen 178 GLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADVFVDSTEDPDIMKAIMKTTDGGIDTVSN 256 (360)
T ss_pred CCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcceeEEecCCHHHHHHHHHhhcCcceeeee
Confidence 444 79999999999999988888999999999999875 33 34455776421 1 23445555666555542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINva 319 (656)
- ..+-+ +..+..||++..+|-++
T Consensus 257 ~--a~~~~-~~~~~~lk~~Gt~V~vg 279 (360)
T KOG0023|consen 257 L--AEHAL-EPLLGLLKVNGTLVLVG 279 (360)
T ss_pred c--cccch-HHHHHHhhcCCEEEEEe
Confidence 2 12222 23444456655555543
|
|
| >PRK04284 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.16 Score=55.16 Aligned_cols=94 Identities=17% Similarity=0.206 Sum_probs=64.2
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Ch-h-------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PA-D-------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~-~-------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++.++++..+..+|++|....|.. +. + .+...|.. . .++++.+++||+|..-
T Consensus 152 ~l~g~kia~vGD~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvy~~ 231 (332)
T PRK04284 152 PYKDIKFTYVGDGRNNVANALMQGAAIMGMDFHLVCPKELNPDDELLNKCKEIAAETGGKITITDDIDEGVKGSDVIYTD 231 (332)
T ss_pred CcCCcEEEEecCCCcchHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEC
Confidence 3789999999975 889999999999999999988752 21 1 12234542 2 4899999999999884
Q ss_pred cCC--Cc--c---------ccccccHHHHhcCC-CCcEEEEcC
Q 006212 291 MPL--NP--T---------TSKIFNDETFAKMK-KGVRIVNVA 319 (656)
Q Consensus 291 ~Pl--t~--~---------T~~li~~~~l~~mK-~gailINva 319 (656)
.=. .. + -...++++.++.+| |+++|.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~~y~v~~e~l~~a~~~~~ivmHpl 274 (332)
T PRK04284 232 VWVSMGEPDEVWEERIKLLKPYQVNKEMMKKTGNPNAIFEHCL 274 (332)
T ss_pred CcccCccchhhHHHHHHhccCCcCCHHHHhhcCCCCcEEECCC
Confidence 210 00 0 12335666677665 477777765
|
|
| >PRK00856 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.18 Score=54.03 Aligned_cols=63 Identities=19% Similarity=0.254 Sum_probs=48.6
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe-ecCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE-LVSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||- +++..+++..+..+|+++....|.. ..... ..+. ..++++.+++||+|..-
T Consensus 153 ~l~g~kv~~vGD~~~~~v~~Sl~~~~~~~g~~~~~~~P~~~~~~~~--~~~~~~~d~~ea~~~aDvvyt~ 220 (305)
T PRK00856 153 RLEGLKVAIVGDIKHSRVARSNIQALTRLGAEVRLIAPPTLLPEGM--PEYGVHTDLDEVIEDADVVMML 220 (305)
T ss_pred CCCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEECCcccCcccc--cceEEECCHHHHhCCCCEEEEC
Confidence 378999999988 5899999999999999999988754 11111 1122 34899999999999874
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.035 Score=61.93 Aligned_cols=71 Identities=23% Similarity=0.194 Sum_probs=54.4
Q ss_pred ccccCCCEEEEEec----------ChhHHHHHHHHhcCC-CEEEEECCCCChhHH-HHcCCeecCHHHHhccCCEEEEcc
Q 006212 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLG-MNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHM 291 (656)
Q Consensus 224 g~~l~gktvGIIGl----------G~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~ 291 (656)
+.++.|++|+|+|+ ..-...+++.|+..| .+|.+|||....... ....+...++++.++.||.|++++
T Consensus 315 ~~~~~~~~v~vlGlafK~~t~d~r~Sp~~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t 394 (415)
T PRK11064 315 DKRASEVKIACFGLAFKPNIDDLRESPAMEIAELIAQWHSGETLVVEPNIHQLPKKLDGLVTLVSLDEALATADVLVMLV 394 (415)
T ss_pred ccCcCCCEEEEEeeEECCCCcchhhChHHHHHHHHHhcCCcEEEEECCCCCchhhhccCceeeCCHHHHHhCCCEEEECC
Confidence 56789999999998 446778999999985 999999998643211 111234468999999999999999
Q ss_pred CCC
Q 006212 292 PLN 294 (656)
Q Consensus 292 Plt 294 (656)
+-.
T Consensus 395 ~~~ 397 (415)
T PRK11064 395 DHS 397 (415)
T ss_pred CCH
Confidence 843
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.024 Score=56.95 Aligned_cols=37 Identities=24% Similarity=0.416 Sum_probs=33.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 17 QRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 46899999999999999999999999997 78888875
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.06 Score=57.31 Aligned_cols=62 Identities=19% Similarity=0.403 Sum_probs=43.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------C--Cee---cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G--VEL---VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g--~~~---~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|. +|..+|........... + ... .+. +.+++||+|++++.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 589999999999999999986654 99999986532211111 1 111 245 45899999999864
|
|
| >COG0026 PurK Phosphoribosylaminoimidazole carboxylase (NCAIR synthetase) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.029 Score=60.82 Aligned_cols=61 Identities=30% Similarity=0.395 Sum_probs=46.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCC--eec---CHHHHhccCCEEEE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELV---SFDQALATADFISL 289 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~--~~~---~l~ell~~aDvV~l 289 (656)
++||||||-|..|+-++..++.+|++|++.||.... ......-+ .+. .+.++++.||+|+.
T Consensus 1 ~~tvgIlGGGQLgrMm~~aa~~lG~~v~vLdp~~~~PA~~va~~~i~~~~dD~~al~ela~~~DViT~ 68 (375)
T COG0026 1 MKTVGILGGGQLGRMMALAAARLGIKVIVLDPDADAPAAQVADRVIVAAYDDPEALRELAAKCDVITY 68 (375)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCEEEEecCCCCCchhhcccceeecCCCCHHHHHHHHhhCCEEEE
Confidence 479999999999999999999999999999987622 11111111 111 47889999999976
|
|
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.035 Score=57.89 Aligned_cols=111 Identities=19% Similarity=0.229 Sum_probs=67.9
Q ss_pred EEEEec-ChhHHHHHHHHhcCC----CEEEEECCCCCh-h-HHH-------Hc-CCe--e-cCHHHHhccCCEEEEccCC
Q 006212 232 LAVMGF-GKVGSEVARRAKGLG----MNVIAHDPYAPA-D-KAR-------AV-GVE--L-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 232 vGIIGl-G~IG~~vA~~lk~~G----~~Vi~~d~~~~~-~-~a~-------~~-g~~--~-~~l~ell~~aDvV~l~~Pl 293 (656)
|+|||. |.+|..+|..+...| .+|..||..... + ... .. ... . .++.+.+++||+|+++.-.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~~~ 80 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITAGV 80 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECCCC
Confidence 589999 999999999988666 789999976421 1 111 11 112 1 2567899999999996531
Q ss_pred Ccccccc------------cc--HHHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEEE-eec
Q 006212 294 NPTTSKI------------FN--DETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQAA-LDV 345 (656)
Q Consensus 294 t~~T~~l------------i~--~~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA~-lDV 345 (656)
+...++ +. .+.+.+..|+++++|++ ..+| ...+.+. +...++.|.+ +|.
T Consensus 81 -~~~~g~~r~~~~~~n~~i~~~i~~~i~~~~p~a~~i~~t--NP~d~~t~~~~~~sg~~~~kviG~~~ld~ 148 (263)
T cd00650 81 -GRKPGMGRLDLLKRNVPIVKEIGDNIEKYSPDAWIIVVS--NPVDIITYLVWRYSGLPKEKVIGLGTLDP 148 (263)
T ss_pred -CCCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--CcHHHHHHHHHHHhCCCchhEEEeecchH
Confidence 111111 10 12233355889999995 4444 2233333 3456677777 664
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK02102 ornithine carbamoyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.2 Score=54.33 Aligned_cols=94 Identities=21% Similarity=0.279 Sum_probs=63.0
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|+||++||-+ ++..+++..+..+|++|....|.. +.+ .++..|.. . .++++++++||+|..-
T Consensus 152 ~l~g~~va~vGd~~~~v~~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 231 (331)
T PRK02102 152 PLKGLKLAYVGDGRNNMANSLMVGGAKLGMDVRICAPKELWPEEELVALAREIAKETGAKITITEDPEEAVKGADVIYTD 231 (331)
T ss_pred CCCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 3789999999997 788999999999999999887753 211 12334543 2 4899999999999884
Q ss_pred cCC--Ccc----------ccccccHHHHh-cCCCCcEEEEcC
Q 006212 291 MPL--NPT----------TSKIFNDETFA-KMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Pl--t~~----------T~~li~~~~l~-~mK~gailINva 319 (656)
+=. ..+ ...-++++.++ .+|+++++.-|.
T Consensus 232 ~w~~~~~~~~~~~~~~~~~~y~vt~ell~~~~~~d~ivmH~l 273 (331)
T PRK02102 232 VWVSMGEEDEWEERIKLLKPYQVNMDLMKATGNPDVIFMHCL 273 (331)
T ss_pred CcccCccccchHHHHHhccCCcCCHHHHhhhcCCCCEEECCC
Confidence 310 000 12234555555 356666666654
|
|
| >PRK14804 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.27 Score=52.82 Aligned_cols=66 Identities=21% Similarity=0.402 Sum_probs=50.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCC-h-------hHHHHcC-Cee-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-A-------DKARAVG-VEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~-~-------~~a~~~g-~~~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|+||++||- +++..+++..+..+|++|....|... . +.+++.| +.. .++++.++.||+|..-+
T Consensus 150 ~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~g~i~~~~d~~~av~~aDvvy~d~ 226 (311)
T PRK14804 150 PLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLVTPIAAKENIHAQTVERAKKKGTLSWEMNLHKAVSHADYVYTDT 226 (311)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCCccHHHHHHHHHHHHhcCCeEEEeCHHHHhCCCCEEEeee
Confidence 478999999998 68999999999999999999988542 1 1122233 333 48999999999998843
|
|
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.034 Score=49.96 Aligned_cols=84 Identities=20% Similarity=0.434 Sum_probs=56.2
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH---H-HhccCCEEEEccCCCccccccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD---Q-ALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~---e-ll~~aDvV~l~~Plt~~T~~li 301 (656)
+-|+|+|.+|+.+++.|+..+.+|++.|... ..+.+.+.|+..+ +.+ + -+.+||.|+++++... ..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~--~n~~ 78 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDE--ENLL 78 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHH--HHHH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHH--HHHH
Confidence 5699999999999999999777999999875 3455666776543 222 2 3689999999998443 2222
Q ss_pred cHHHHhcCCCCcEEEE
Q 006212 302 NDETFAKMKKGVRIVN 317 (656)
Q Consensus 302 ~~~~l~~mK~gailIN 317 (656)
-...+..+-+...++-
T Consensus 79 ~~~~~r~~~~~~~ii~ 94 (116)
T PF02254_consen 79 IALLARELNPDIRIIA 94 (116)
T ss_dssp HHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHCCCCeEEE
Confidence 2334444455555543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.054 Score=57.27 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=49.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC----Ceec----CHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG----VELV----SFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g----~~~~----~l~ell~~aDvV~l~~Plt 294 (656)
.+.||++.|||.|-+|++++..|...|+ +|.+++|.... ..+...+ +... ++.+.+.++|+|+.|+|..
T Consensus 122 ~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g 201 (282)
T TIGR01809 122 PLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPAD 201 (282)
T ss_pred ccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCC
Confidence 3678999999999999999999999997 69999987421 2222221 1111 2335567899999999854
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.051 Score=46.07 Aligned_cols=69 Identities=16% Similarity=0.243 Sum_probs=44.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CH---HHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~---e~l~~L~~~~~V~~v~~v 630 (656)
.+.+..+|+||.++.+..++++++|||..+....... ...-...++++... .+ ++++.|++. ..+++++
T Consensus 3 sl~~~~~d~~G~L~~il~~f~~~~ini~~i~s~p~~~~~~~~~f~vd~~~~~~~~~~~~~l~~l~~~--~~~~~~l 76 (80)
T cd04905 3 SIVFTLPNKPGALYDVLGVFAERGINLTKIESRPSKGGLWEYVFFIDFEGHIEDPNVAEALEELKRL--TEFVKVL 76 (80)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCcCEEEEEEEEcCCCCceEEEEEEEECCCCCHHHHHHHHHHHHh--CCeEEEe
Confidence 4566778999999999999999999999997644322 22234456666542 23 345555542 3344443
|
The C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme, found in plants, fungi, bacteria, and archaea. The P-protein of E. coli (CM-PDT, PheA) catalyzes the conversion of chorismate to prephenate and then the decarboxylation and dehydration to form phenylpyruvate. These are the first two steps in the biosynthesis of L-Phe and L-Tyr via the shikimate pathway in microorganisms and plants. The E. coli P-protein (CM-PDT) has three domains with an N-terminal domain with chorismate mutase activity, a middle domain with prephenate dehydratase activity, and an ACT regulatory C-terminal domain. The prephenate dehydratase enzyme has a PDT and ACT domain. The ACT domain is essential to bring about the negative allosteric regulation by L-Phe bindi |
| >TIGR03316 ygeW probable carbamoyltransferase YgeW | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.33 Score=53.21 Aligned_cols=65 Identities=25% Similarity=0.280 Sum_probs=47.9
Q ss_pred ccCCCEEEEEecC--------hhHHHHHHHHhcCCCEEEEECCCC---Chh---H----HHHcCCe--e-cCHHHHhccC
Q 006212 226 SLVGKTLAVMGFG--------KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGVE--L-VSFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIGlG--------~IG~~vA~~lk~~G~~Vi~~d~~~---~~~---~----a~~~g~~--~-~~l~ell~~a 284 (656)
.|.|+||+|+|.| ++..+++..+..|||+|....|.. ..+ . +++.|.. . .++++.++++
T Consensus 167 ~l~g~kvai~~~~d~~~gr~~~v~~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~~ea~~~a 246 (357)
T TIGR03316 167 NLKGKKFAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYHLLPEVIEVAKKNAAENGGKFNIVNSMDEAFKDA 246 (357)
T ss_pred ccCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 3789999999853 445778888889999999988753 221 1 2344643 2 4899999999
Q ss_pred CEEEEc
Q 006212 285 DFISLH 290 (656)
Q Consensus 285 DvV~l~ 290 (656)
|+|..-
T Consensus 247 Dvvyt~ 252 (357)
T TIGR03316 247 DIVYPK 252 (357)
T ss_pred CEEEEC
Confidence 999885
|
Members of this protein family include the ygeW gene product of Escherichia coli. The function is unknown. Members show homology to ornithine carbamoyltransferase (TIGR00658) and aspartate carbamoyltransferase (carbamoyltransferase), and therefore may belong to the carbamoyltransferases in function. Members often are found in a large, conserved genomic region associated with purine catabolism. |
| >PRK11891 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.3 Score=54.67 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=50.1
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcC-CCEEEEECCCC---Chh---HHHHcCCe--e-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGL-GMNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~-G~~Vi~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|+||++||-+ ++..+++..+..+ ||+|....|.. +.+ .+.+.|.. . .++++.+++||+|....
T Consensus 238 ~l~G~kIa~vGD~~~~rv~~Sl~~~la~~~G~~v~l~~P~~~~~~~~~~~~~~~~G~~v~~~~d~~eav~~ADVVYt~~ 316 (429)
T PRK11891 238 IVDGAHIALVGDLKYGRTVHSLVKLLALYRGLKFTLVSPPTLEMPAYIVEQISRNGHVIEQTDDLAAGLRGADVVYATR 316 (429)
T ss_pred CcCCCEEEEECcCCCChHHHHHHHHHHHhcCCEEEEECCCccccCHHHHHHHHhcCCeEEEEcCHHHHhCCCCEEEEcC
Confidence 4789999999994 8999999988776 99999887753 222 23334543 2 48999999999998833
|
|
| >TIGR00655 PurU formyltetrahydrofolate deformylase | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.049 Score=57.67 Aligned_cols=61 Identities=15% Similarity=0.223 Sum_probs=47.6
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC---CCH-HHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE---PNQ-DSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~---~~~-e~l~~L~~ 620 (656)
.|.+..+|+||+|++|++.|+++|+||.+++-.....++.=.|++.+|-+ .+. ++.+.+..
T Consensus 2 ~itv~g~D~~GIVA~Vt~~La~~g~NI~d~sq~~~~~~~~F~mr~~v~~~~~~~~~~~l~~~l~~ 66 (280)
T TIGR00655 2 ILLVSCPDQKGLVAAISTFIAKHGANIISNDQHTDPETGRFFMRVEFQLEGFRLEESSLLAAFKS 66 (280)
T ss_pred EEEEECCCCCChHHHHHHHHHHCCCCEEeeeEEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 46678899999999999999999999999998876666777788777743 233 44444555
|
This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region. |
| >PRK13814 pyrB aspartate carbamoyltransferase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.32 Score=52.27 Aligned_cols=63 Identities=14% Similarity=0.227 Sum_probs=48.2
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEE
Q 006212 227 LVGKTLAVMGF---GKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISL 289 (656)
Q Consensus 227 l~gktvGIIGl---G~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l 289 (656)
+.|++|+++|= +++..+++..+..+|+ +|....|.. .++......+.. .++++.++.||+|..
T Consensus 155 l~g~~va~vGD~~~~rv~~Sl~~~~a~~g~~~v~~~~P~~~~p~~~~~~~~~~~~d~~ea~~~aDvvy~ 223 (310)
T PRK13814 155 WNKLCVTIIGDIRHSRVANSLMDGLVTMGVPEIRLVGPSSLLPDKVGNDSIKKFTELKPSLLNSDVIVT 223 (310)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHcCCCEEEEeCCcccCcCccccceEEEEcCHHHHhCCCCEEEE
Confidence 67999999998 5999999999999999 999888754 111111112333 489999999999987
|
|
| >PLN02342 ornithine carbamoyltransferase | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.38 Score=52.50 Aligned_cols=94 Identities=20% Similarity=0.212 Sum_probs=62.6
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--C-hh---HHHHcC---Cee-cCHHHHhccCCEEEEcc---
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-AD---KARAVG---VEL-VSFDQALATADFISLHM--- 291 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~---~a~~~g---~~~-~~l~ell~~aDvV~l~~--- 291 (656)
.+.|+||++||=+ ++-.+++..+..+|++|....|.. + .+ .+.+.| +.. .++++.+++||+|..-.
T Consensus 191 ~l~glkva~vGD~~nva~Sli~~~~~~G~~v~~~~P~~~~~~~~~~~~a~~~g~~~~~~~~d~~eav~~aDVvy~~~W~s 270 (348)
T PLN02342 191 RLEGTKVVYVGDGNNIVHSWLLLAAVLPFHFVCACPKGYEPDAKTVEKARAAGISKIEITNDPAEAVKGADVVYTDVWAS 270 (348)
T ss_pred CcCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccccCHHHHHHHHHhCCCcEEEEcCHHHHhCCCCEEEECCccc
Confidence 4789999999974 577888888889999999887753 2 11 233334 333 48999999999998853
Q ss_pred CCCcc---------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPT---------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~---------T~~li~~~~l~~mK~gailINva 319 (656)
-...+ ....++++.++.+|++++|.-|.
T Consensus 271 ~~~~e~~~~~~~~~~~y~vt~ell~~ak~~aivMHpL 307 (348)
T PLN02342 271 MGQKEEAEKRKKAFQGFQVNEALMKLAGPQAYFMHCL 307 (348)
T ss_pred cccchhhHHHHHhccCCccCHHHHhccCCCcEEeCCC
Confidence 00100 11345666666666666666664
|
|
| >KOG2653 consensus 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.19 Score=54.21 Aligned_cols=149 Identities=18% Similarity=0.246 Sum_probs=102.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHH---HHcCCe---ecCHHHHh---ccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKA---RAVGVE---LVSFDQAL---ATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a---~~~g~~---~~~l~ell---~~aDvV~l~~Plt~~T~~ 299 (656)
..||.|||+.||+.++..+...|+.|.+|++..+. +.. ++.|.. ..++++++ +.-..|++.+-.-.-...
T Consensus 7 ~digLiGLaVMGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~ 86 (487)
T KOG2653|consen 7 ADIGLIGLAVMGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQ 86 (487)
T ss_pred cchhhhhHhhhhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHH
Confidence 36899999999999999999999999999997632 221 122322 34788874 566777776653333333
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
+| ++....|.+|-+|||-+-..--|...-.+.|....|...|.-|.+.|--+...| -+ -| +-+.+++.+
T Consensus 87 ~I-~~L~p~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-----Sl--Mp---Gg~~~Awp~ 155 (487)
T KOG2653|consen 87 FI-EELVPYLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-----SL--MP---GGSKEAWPH 155 (487)
T ss_pred HH-HHHHhhcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-----cc--CC---CCChHHHHH
Confidence 34 556677999999999998887787777777887777788999999884322222 22 22 455677776
Q ss_pred HHHHHHHHHHH
Q 006212 380 VAIEIAEAVVG 390 (656)
Q Consensus 380 ~~~~~~~~i~~ 390 (656)
+ ..+.+.|..
T Consensus 156 i-k~ifq~iaa 165 (487)
T KOG2653|consen 156 I-KDIFQKIAA 165 (487)
T ss_pred H-HHHHHHHHH
Confidence 5 344455533
|
|
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.087 Score=56.66 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=46.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHHc--------CCee-cCHHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~~--------g~~~-~~l~ell~~aDvV~l~~P 292 (656)
.+++|+|||.|.+|..+|..+...|. ++..+|.+..... +.++ .+.. .+-.+.+++||+|+++.-
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag 82 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAG 82 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecC
Confidence 46799999999999999999987776 8999998653221 1111 1111 122355899999999764
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.07 Score=61.44 Aligned_cols=70 Identities=24% Similarity=0.336 Sum_probs=47.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeecCHHHH---h-ccCCEEEEccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQA---L-ATADFISLHMPL 293 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~~l~el---l-~~aDvV~l~~Pl 293 (656)
+..+.||++.|+|.|-+|++++..|...|++|+++++.... ..+...+....++++. . ..+|+|+.++|.
T Consensus 374 ~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~v 449 (529)
T PLN02520 374 GSPLAGKLFVVIGAGGAGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSV 449 (529)
T ss_pred ccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccC
Confidence 34578999999999999999999999999999999986421 1222223222333322 1 345666666663
|
|
| >COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.036 Score=56.23 Aligned_cols=90 Identities=19% Similarity=0.169 Sum_probs=67.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH---HHHcCCee----cCHHHHhccCCEEEEccCCCcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAVGVEL----VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~---a~~~g~~~----~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..+|.||+|.|||-|.+|..=|+.+...|.+|+++.|....+. ....++.. .+.+++ ..+++|+.+++...
T Consensus 7 ~~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~~~~el~~~~~~~~i~~~~~~~~~~~~-~~~~lviaAt~d~~- 84 (210)
T COG1648 7 FLDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPEFEPELKALIEEGKIKWIEREFDAEDL-DDAFLVIAATDDEE- 84 (210)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCCccHHHHHHHHhcCcchhhcccChhhh-cCceEEEEeCCCHH-
Confidence 4579999999999999999999999999999999998863322 12222222 233444 44999999988443
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
+|+..+..+++-.+++|+.
T Consensus 85 ----ln~~i~~~a~~~~i~vNv~ 103 (210)
T COG1648 85 ----LNERIAKAARERRILVNVV 103 (210)
T ss_pred ----HHHHHHHHHHHhCCceecc
Confidence 6777778788888999985
|
|
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.082 Score=57.05 Aligned_cols=65 Identities=17% Similarity=0.298 Sum_probs=46.1
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------C----Cee-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------G----VEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g----~~~-~~l~ell~~aDvV~l~~ 291 (656)
+..++|+|||.|.+|..+|..+...|. +|..+|.......+..+ + +.. .+. +.+++||+|+++.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 445799999999999999999887774 89999976532211111 1 122 255 4679999999977
Q ss_pred C
Q 006212 292 P 292 (656)
Q Consensus 292 P 292 (656)
-
T Consensus 83 g 83 (321)
T PTZ00082 83 G 83 (321)
T ss_pred C
Confidence 3
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.04 Score=57.49 Aligned_cols=63 Identities=24% Similarity=0.332 Sum_probs=41.8
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCCCh-hHHHHcCCe-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPA-DKARAVGVE-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~~~-~~a~~~g~~-~~~l~ell~~aDvV~l~~P 292 (656)
.+|+|+|+ |+||+.+++.+... ++++.+ +|+.... ......++. +.+++++++.+|+|+.++|
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~ 69 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT 69 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC
Confidence 47999998 99999999998854 788776 6765421 111222332 2367777766777766654
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.031 Score=57.18 Aligned_cols=63 Identities=25% Similarity=0.382 Sum_probs=44.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH--cCCeec-----C---HHHH-hccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA--VGVELV-----S---FDQA-LATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~--~g~~~~-----~---l~el-l~~aDvV~l~~P 292 (656)
+++.|+|+|..|+.+|+.|...|+.|+..|..... ....+ .+...+ + |.++ +.++|.++.++.
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~ 75 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATG 75 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeC
Confidence 57999999999999999999999999999987522 22122 333211 1 4444 677777777766
|
|
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.077 Score=56.29 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=33.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~ 262 (656)
.+.||++.|+|.|.+|++++..|...|.+ |.+++++.
T Consensus 123 ~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 123 DVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 46789999999999999999999999986 99998864
|
|
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.043 Score=61.75 Aligned_cols=64 Identities=31% Similarity=0.405 Sum_probs=47.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCH-HHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSF-DQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l-~ell~~aDvV~l 289 (656)
++.|++|.|+|+|.+|.++|+.|+..|++|.++|.+.. .......|+..... .+-+.++|+|+.
T Consensus 6 ~~~~~~i~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~ 71 (460)
T PRK01390 6 GFAGKTVAVFGLGGSGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVL 71 (460)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEE
Confidence 36789999999999999999999999999999997642 22234457654322 233578998865
|
|
| >PRK13010 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.038 Score=58.73 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=41.1
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D 607 (656)
.+.|.+..+|+||+|++|++.|+++|+||.+++-......+.-+|+++++
T Consensus 9 ~~iitv~G~Dr~GIVA~Vs~~Lae~g~NI~disq~~d~~~~~ffm~i~~~ 58 (289)
T PRK13010 9 SYVLTLACPSAPGIVAAVSGFLAEKGCYIVELTQFDDDESGRFFMRVSFH 58 (289)
T ss_pred CEEEEEECCCCCCcHHHHHHHHHHCCCCEEecccccccccCcEEEEEEEE
Confidence 34677789999999999999999999999999886444556667777766
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.068 Score=59.80 Aligned_cols=110 Identities=22% Similarity=0.303 Sum_probs=68.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec---CHHHHhccCCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+.+|++.|+|.|.+|.++|+.|...|++|.++|+.... +.....|+... ..++....+|+|+.+.-..+.
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~~~~ 81 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGVPLD 81 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCCCCC
Confidence 467999999999999999999999999999999986421 11223465432 244567789999887654333
Q ss_pred ccccc----------cH-HHHhcCCCCcEEEEcC-CCchhcHHHHHHhHhc
Q 006212 297 TSKIF----------ND-ETFAKMKKGVRIVNVA-RGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~li----------~~-~~l~~mK~gailINva-Rg~ivde~aL~~aL~~ 335 (656)
...+. .. +.+....+..++-=+| .|+--..+-|...|+.
T Consensus 82 ~~~~~~a~~~~i~~~~~~~~~~~~~~~~vI~ITGS~GKTTt~~~l~~iL~~ 132 (450)
T PRK14106 82 SPPVVQAHKKGIEVIGEVELAYRFSKAPIVAITGTNGKTTTTTLLGEIFKN 132 (450)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 22111 11 1122222233333333 5777666666666654
|
|
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.026 Score=52.22 Aligned_cols=61 Identities=20% Similarity=0.384 Sum_probs=42.5
Q ss_pred EEEEEec-ChhHHHHHHHHhc-CCCEEEE-ECCCCC----hhHHH-----HcCCee-cCHHHHhccCCEEEEcc
Q 006212 231 TLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAP----ADKAR-----AVGVEL-VSFDQALATADFISLHM 291 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~-~G~~Vi~-~d~~~~----~~~a~-----~~g~~~-~~l~ell~~aDvV~l~~ 291 (656)
+|+|+|+ |+||+.+++.+.. -++++.+ +|+..+ .+... ..|+.. .++++++.++|+|+-..
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT 75 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT 75 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC
Confidence 7999999 9999999999997 6898665 565541 11111 223433 37999999999998766
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.079 Score=56.57 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=59.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCC---hhHHHHcCCee--cCHHHHhc-----cCCEEEEccCCCcc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA-----TADFISLHMPLNPT 296 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~---~~~a~~~g~~~--~~l~ell~-----~aDvV~l~~Plt~~ 296 (656)
..++||||.|.||...+..+... ++++.+ +|++.. ...+++.|+.. .+++++++ +.|+|+.++|..
T Consensus 4 klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~-- 81 (302)
T PRK08300 4 KLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAG-- 81 (302)
T ss_pred CCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHH--
Confidence 45799999999999977777644 677765 555442 24577788864 37899884 589999999832
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
.. -+......+.|+.+||-.
T Consensus 82 ~H---~e~a~~a~eaGk~VID~s 101 (302)
T PRK08300 82 AH---VRHAAKLREAGIRAIDLT 101 (302)
T ss_pred HH---HHHHHHHHHcCCeEEECC
Confidence 11 122222357788888876
|
|
| >PRK12562 ornithine carbamoyltransferase subunit F; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.49 Score=51.40 Aligned_cols=94 Identities=20% Similarity=0.257 Sum_probs=63.8
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--Chh----H----HHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--PAD----K----ARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~~~----~----a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||-+ ++..+++..+..+|++|....|.. +.+ . +...|.. . .++++.+++||+|..-
T Consensus 153 ~l~gl~va~vGD~~~~v~~S~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 232 (334)
T PRK12562 153 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEASLVAECSALAQKHGGKITLTEDIAAGVKGADFIYTD 232 (334)
T ss_pred CcCCcEEEEECCCCCCHHHHHHHHHHHcCCEEEEECCcccCCcHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCCCEEEEc
Confidence 4789999999986 789999999999999999887753 211 1 2233543 2 4899999999999885
Q ss_pred cC--CC--cc---------ccccccHHHHhcC-CCCcEEEEcC
Q 006212 291 MP--LN--PT---------TSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 291 ~P--lt--~~---------T~~li~~~~l~~m-K~gailINva 319 (656)
.= .. .+ -..-++.+.++.. |+++++.-|.
T Consensus 233 ~w~sm~~~~~~~~~~~~~~~~y~v~~ell~~a~~~~~i~mHcL 275 (334)
T PRK12562 233 VWVSMGEPKEKWAERIALLRGYQVNSKMMALTGNPQVKFLHCL 275 (334)
T ss_pred CccccccchhhHHHHHHhccCCcCCHHHHHhhcCCCCEEECCC
Confidence 31 00 00 1223466666664 6777777774
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.097 Score=55.55 Aligned_cols=85 Identities=16% Similarity=0.250 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEE-ECCCCC---hhHHHHcCCee--cCHHHHhc--cCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAP---ADKARAVGVEL--VSFDQALA--TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~-~d~~~~---~~~a~~~g~~~--~~l~ell~--~aDvV~l~~Plt~~T~~l 300 (656)
.++||||.|+||...+..+.. -++++.+ +|++.. ...+++.|+.. .+.++++. +.|+|++++|.. +..
T Consensus 2 lrVAIIG~G~IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~--~H~- 78 (285)
T TIGR03215 2 VKVAIIGSGNIGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAK--AHA- 78 (285)
T ss_pred cEEEEEeCcHHHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcH--HHH-
Confidence 379999999999998777764 3677765 565542 34567788753 37888885 688999999933 221
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006212 301 FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 301 i~~~~l~~mK~gailINva 319 (656)
+.....++.|..+++-.
T Consensus 79 --e~a~~al~aGk~VIdek 95 (285)
T TIGR03215 79 --RHARLLAELGKIVIDLT 95 (285)
T ss_pred --HHHHHHHHcCCEEEECC
Confidence 22233356777777654
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=95.02 E-value=0.11 Score=55.07 Aligned_cols=71 Identities=24% Similarity=0.409 Sum_probs=49.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC-hhHH----HHcC------CeecCHH------HHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKA----RAVG------VELVSFD------QALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~-~~~a----~~~g------~~~~~l~------ell~~aD 285 (656)
+..+.||++.|+|.|-.+++++..+...|. +|.+++|... .+++ ...+ +...+++ +.+.++|
T Consensus 119 ~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~~~~~~~~~l~~~~~~aD 198 (288)
T PRK12749 119 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 198 (288)
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEEechhhhhhhhhhcccCC
Confidence 345789999999999999999999988886 8999998742 2222 2221 1223332 3456789
Q ss_pred EEEEccCCC
Q 006212 286 FISLHMPLN 294 (656)
Q Consensus 286 vV~l~~Plt 294 (656)
+|+.++|.-
T Consensus 199 ivINaTp~G 207 (288)
T PRK12749 199 ILTNGTKVG 207 (288)
T ss_pred EEEECCCCC
Confidence 998888853
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=95.01 E-value=0.12 Score=57.94 Aligned_cols=96 Identities=18% Similarity=0.257 Sum_probs=64.0
Q ss_pred ccccCCCEEEEEec----------ChhHHHHHHHHhcCCCEEEEECCCCChhHH-HHcCCeecCHHHHhccCCEEEEccC
Q 006212 224 GVSLVGKTLAVMGF----------GKVGSEVARRAKGLGMNVIAHDPYAPADKA-RAVGVELVSFDQALATADFISLHMP 292 (656)
Q Consensus 224 g~~l~gktvGIIGl----------G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a-~~~g~~~~~l~ell~~aDvV~l~~P 292 (656)
+..+.|++|+|+|+ ..-+..+++.|+..|.+|.+|||+...+.. ...+....+ ...++.||.|++++.
T Consensus 309 ~~~~~~~~V~vlGlafK~~t~D~R~Spa~~ii~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~-~~~~~~ad~vvi~t~ 387 (425)
T PRK15182 309 GINVEGSSVLILGFTFKENCPDIRNTRIIDVVKELGKYSCKVDIFDPWVDAEEVRREYGIIPVS-EVKSSHYDAIIVAVG 387 (425)
T ss_pred CCCCCCCEEEEEEeEeCCCCCccccCcHHHHHHHHHhCCCEEEEECCCCChhHHHHhcCcccch-hhhhcCCCEEEEccC
Confidence 45689999999999 446788999999999999999998643322 223322111 224678999999998
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCCCch
Q 006212 293 LNPTTSKIFNDETFA-KMKKGVRIVNVARGGV 323 (656)
Q Consensus 293 lt~~T~~li~~~~l~-~mK~gailINvaRg~i 323 (656)
- ++-+. ++-+.+. .||...+|+|+ |+-+
T Consensus 388 h-~~f~~-~~~~~~~~~~~~~~~iiD~-r~~~ 416 (425)
T PRK15182 388 H-QQFKQ-MGSEDIRGFGKDKHVLYDL-KYVL 416 (425)
T ss_pred C-HHhhc-CCHHHHHHhcCCCCEEEEC-CCCC
Confidence 3 33332 3444443 45545688894 5443
|
|
| >cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1 | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.89 Score=48.11 Aligned_cols=183 Identities=17% Similarity=0.147 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcC----CC-------EEEEE
Q 006212 190 AAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGL----GM-------NVIAH 258 (656)
Q Consensus 190 vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~----G~-------~Vi~~ 258 (656)
+|=-+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+... |+ +++.+
T Consensus 4 Ta~V~lAgllnAlk------------------~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~v 65 (279)
T cd05312 4 TAAVALAGLLAALR------------------ITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLV 65 (279)
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEE
Confidence 34456666676665 346788899999999999999999998865 77 78888
Q ss_pred CCCC-------Ch-----hHHHHcC-CeecCHHHHhc--cCCEEEEccCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006212 259 DPYA-------PA-----DKARAVG-VELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (656)
Q Consensus 259 d~~~-------~~-----~~a~~~g-~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~~l~~mK---~gailINvaR 320 (656)
|.+- .. ..++... -...+|.|+++ .+|+++=+-- .-++++++.++.|. +..+|.=.+.
T Consensus 66 D~~Gll~~~r~~l~~~~~~~a~~~~~~~~~~L~e~i~~v~ptvlIG~S~----~~g~ft~evv~~Ma~~~~~PIIFaLSN 141 (279)
T cd05312 66 DSKGLLTKDRKDLTPFKKPFARKDEEKEGKSLLEVVKAVKPTVLIGLSG----VGGAFTEEVVRAMAKSNERPIIFALSN 141 (279)
T ss_pred cCCCeEeCCCCcchHHHHHHHhhcCcccCCCHHHHHHhcCCCEEEEeCC----CCCCCCHHHHHHHHhcCCCCEEEECCC
Confidence 8651 11 1122111 02348999999 8899876431 23689999999998 8899999986
Q ss_pred Cch---hcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHHHHH
Q 006212 321 GGV---IDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAVVGA 391 (656)
Q Consensus 321 g~i---vde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea-----~~~~~~~~~~~i~~~ 391 (656)
-.. ...++.+++ .+| .|.+.|+-.-..+........=+..|+++-|-++-....+ -++|-..+++.|.++
T Consensus 142 Pt~~~E~~pe~a~~~-t~G~ai~ATGsPf~pv~~~Gr~~~p~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~ 220 (279)
T cd05312 142 PTSKAECTAEDAYKW-TDGRALFASGSPFPPVEYNGKTYVPGQGNNAYIFPGIGLGAILSGARHITDEMFLAAAEALASL 220 (279)
T ss_pred cCCccccCHHHHHHh-hcCCEEEEeCCCCCCeeeCCeEecCCCcceeeeccchhhHHHHcCCeeCCHHHHHHHHHHHHHh
Confidence 433 123333332 334 4766665433333211122223456899999887432222 245556666677666
Q ss_pred HcCC
Q 006212 392 LRGE 395 (656)
Q Consensus 392 l~g~ 395 (656)
...+
T Consensus 221 ~~~~ 224 (279)
T cd05312 221 VTDE 224 (279)
T ss_pred CCcc
Confidence 5443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH |
| >COG0281 SfcA Malic enzyme [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.2 Score=49.33 Aligned_cols=182 Identities=21% Similarity=0.214 Sum_probs=116.0
Q ss_pred hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC
Q 006212 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (656)
Q Consensus 174 ~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~ 253 (656)
+..|.|.|.-- .-+|=.+++-+++.+| ..|..|...+|.+.|.|.-|-.+++.+++.|+
T Consensus 165 ~~~IPvFhDDq---qGTaiv~lA~llnalk------------------~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~ 223 (432)
T COG0281 165 RMNIPVFHDDQ---QGTAIVTLAALLNALK------------------LTGKKLKDQKIVINGAGAAGIAIADLLVAAGV 223 (432)
T ss_pred cCCCCcccccc---cHHHHHHHHHHHHHHH------------------HhCCCccceEEEEeCCcHHHHHHHHHHHHhCC
Confidence 34577777643 2345556777777665 46889999999999999999999999999998
Q ss_pred ---EEEEECCCC--ChhH------------HHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 006212 254 ---NVIAHDPYA--PADK------------ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (656)
Q Consensus 254 ---~Vi~~d~~~--~~~~------------a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI 316 (656)
+|+.+|+.- ...+ +.+.--.+.. ++.+..+|+++=+- ..+.+.++.++.|.++++|.
T Consensus 224 ~~~~i~~~D~~G~l~~~r~~~~~~~~k~~~a~~~~~~~~~-~~~~~~adv~iG~S-----~~G~~t~e~V~~Ma~~PiIf 297 (432)
T COG0281 224 KEENIFVVDRKGLLYDGREDLTMNQKKYAKAIEDTGERTL-DLALAGADVLIGVS-----GVGAFTEEMVKEMAKHPIIF 297 (432)
T ss_pred CcccEEEEecCCcccCCCcccccchHHHHHHHhhhccccc-cccccCCCEEEEcC-----CCCCcCHHHHHHhccCCEEe
Confidence 588888652 1110 1000001111 45788999986543 22889999999999999999
Q ss_pred EcCCCc--hhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH-----HHHHHHHHHHHH
Q 006212 317 NVARGG--VIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA-----QEGVAIEIAEAV 388 (656)
Q Consensus 317 NvaRg~--ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea-----~~~~~~~~~~~i 388 (656)
=.+--. +.-+++ .++ ..+ .|.+.|.--+ |- +..|+++-|.++-.-..+ -++|...+++.|
T Consensus 298 alaNP~pEi~Pe~a-~~~-~~~aaivaTGrsd~---------Pn-QvNNvL~FPgIfrGaLd~rA~~ItdeM~~AAa~Ai 365 (432)
T COG0281 298 ALANPTPEITPEDA-KEW-GDGAAIVATGRSDY---------PN-QVNNVLIFPGIFRGALDVRAKTITDEMKIAAAEAI 365 (432)
T ss_pred ecCCCCccCCHHHH-hhc-CCCCEEEEeCCCCC---------cc-cccceeEcchhhhhhHhhccccCCHHHHHHHHHHH
Confidence 888533 222332 222 222 5544432222 21 567999999886432222 145556666777
Q ss_pred HHHHcC
Q 006212 389 VGALRG 394 (656)
Q Consensus 389 ~~~l~g 394 (656)
.++...
T Consensus 366 A~~~~~ 371 (432)
T COG0281 366 ADLARE 371 (432)
T ss_pred Hhhccc
Confidence 776543
|
|
| >cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.2 Score=46.43 Aligned_cols=181 Identities=14% Similarity=0.105 Sum_probs=113.8
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-----------EEEEEC
Q 006212 191 AEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-----------NVIAHD 259 (656)
Q Consensus 191 AE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-----------~Vi~~d 259 (656)
|=-+++-+++.+| ..|..|...+|.|+|.|.-|-.+|+.+...++ +++.+|
T Consensus 5 aaV~lAgllnAlk------------------~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD 66 (254)
T cd00762 5 ASVAVAGLLAALK------------------VTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVD 66 (254)
T ss_pred HHHHHHHHHHHHH------------------HhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEEC
Confidence 4456666776665 34678889999999999999999999987654 688888
Q ss_pred CCC-------C--h--hH---HHHcCCeecCHHHHhc--cCCEEEEccCCCccccccccHHHHhcCC---CCcEEEEcCC
Q 006212 260 PYA-------P--A--DK---ARAVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDETFAKMK---KGVRIVNVAR 320 (656)
Q Consensus 260 ~~~-------~--~--~~---a~~~g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~~l~~mK---~gailINvaR 320 (656)
.+- . . .. .....-...+|.|+++ ..|+++=.. ..-+++.++.++.|. +..+|.=.+.
T Consensus 67 ~~Gll~~~r~~l~~~~~~~~~~~~~~~~~~~L~eav~~~kptvlIG~S----~~~g~ft~evv~~Ma~~~~~PIIFaLSN 142 (254)
T cd00762 67 RKGLLVKNRKETCPNEYHLARFANPERESGDLEDAVEAAKPDFLIGVS----RVGGAFTPEVIRAXAEINERPVIFALSN 142 (254)
T ss_pred CCCeEeCCCCccCHHHHHHHHHcCcccccCCHHHHHHhhCCCEEEEeC----CCCCCCCHHHHHHHhhcCCCCEEEECCC
Confidence 641 1 1 11 1111112348999999 999987633 125789999999998 8899999886
Q ss_pred Cch---hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHH-----HHHHHHHHHHHHHHH
Q 006212 321 GGV---IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ-----EGVAIEIAEAVVGAL 392 (656)
Q Consensus 321 g~i---vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~-----~~~~~~~~~~i~~~l 392 (656)
-.. ...++.+++=+...|.+.|.-.+.++-.......-+..|+++-|-++-....++ ++|-..+++.+.++.
T Consensus 143 Pt~~aE~tpe~a~~~t~G~ai~AtGspf~pv~~~g~~~~~~Q~NN~~iFPGiglGal~~~a~~itd~m~~aAA~aLA~~v 222 (254)
T cd00762 143 PTSKAECTAEEAYTATEGRAIFASGSPFHPVELNGGTYKPGQGNNLYIFPGVALGVILCRIRHITDDVFLSAAEAIASSV 222 (254)
T ss_pred cCCccccCHHHHHhhcCCCEEEEECCCCCCcccCCceeecccccceeeccchhhhhHhhcCeECCHHHHHHHHHHHHhhC
Confidence 433 133343443333367666665554442111122235678999998864322221 445555556665554
Q ss_pred c
Q 006212 393 R 393 (656)
Q Consensus 393 ~ 393 (656)
.
T Consensus 223 ~ 223 (254)
T cd00762 223 T 223 (254)
T ss_pred C
Confidence 3
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut |
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.078 Score=59.29 Aligned_cols=110 Identities=16% Similarity=0.203 Sum_probs=67.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-----hHHHHcCCeec---CHHHHhcc-CCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-----~~a~~~g~~~~---~l~ell~~-aDvV~l~~Plt~~ 296 (656)
++.||++.|+|.|.+|.++|+.|++.|++|.++|..... +...+.|+... ...+++.. +|+|+...-..+.
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~gi~~~ 81 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNPGIPYT 81 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECCCCCCC
Confidence 367999999999999999999999999999999965311 22344566542 23344554 8988775522221
Q ss_pred c----------cccccHHHH-hcCCCC-cEEEEcCCCchhcHHHHHHhHhc
Q 006212 297 T----------SKIFNDETF-AKMKKG-VRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T----------~~li~~~~l-~~mK~g-ailINvaRg~ivde~aL~~aL~~ 335 (656)
. ..++.+.++ ..+.+. .+-|--+.|+--...-+...|+.
T Consensus 82 ~~~~~~a~~~~i~v~~~~el~~~~~~~~~I~VTGT~GKTTTt~ll~~iL~~ 132 (447)
T PRK02472 82 NPMVEKALEKGIPIITEVELAYLISEAPIIGITGSNGKTTTTTLIGEMLKA 132 (447)
T ss_pred CHHHHHHHHCCCcEEeHHHHHHHhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 1 122333333 233332 33333346777666666666654
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.065 Score=60.77 Aligned_cols=66 Identities=20% Similarity=0.250 Sum_probs=50.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcCCeec---CHHHHhccCCEEEEc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLH 290 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~ 290 (656)
.++.+|++.|+|+|..|.++|+.|+..|++|.++|+..... .....|+.+. ...+.+.++|+|+..
T Consensus 11 ~~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 11 PQELSGRVLVAGAGVSGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred ccccCCeEEEEccCHHHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 35789999999999999999999999999999999764221 2244577553 233456789998765
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.051 Score=60.74 Aligned_cols=65 Identities=20% Similarity=0.280 Sum_probs=49.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-cCCeec--------CHHHH-hccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-VGVELV--------SFDQA-LATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-~g~~~~--------~l~el-l~~aDvV~l~~Plt 294 (656)
+++.|+|+|.+|+.+|+.|...|++|+++|++.. .+.+.+ .|+... .++++ +.++|.|+++++..
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~ 76 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSD 76 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCCh
Confidence 4789999999999999999999999999998652 233333 444321 24555 78999999999843
|
|
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.23 Score=54.63 Aligned_cols=102 Identities=16% Similarity=0.169 Sum_probs=69.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh----------------hHHHHcC-----Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA----------------DKARAVG-----VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~----------------~~a~~~g-----~~~-~~l~ell~~aDvV 287 (656)
++|.|+|.|-+|-..+..+..+|.+|+.+|-.... +...+.+ ..+ .+.++.++++|++
T Consensus 1 MkI~viGtGYVGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~ 80 (414)
T COG1004 1 MKITVIGTGYVGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVV 80 (414)
T ss_pred CceEEECCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEE
Confidence 47899999999999999999999999999854321 1111111 122 3688899999999
Q ss_pred EEccCCCccccccccH--------HHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006212 288 SLHMPLNPTTSKIFND--------ETFAKMKKGVRIVNVARGGVIDEEALVR 331 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~--------~~l~~mK~gailINvaRg~ivde~aL~~ 331 (656)
++|+|..+.-.+-++- +....++..+++|+=+.-.+=-.+.+.+
T Consensus 81 fIavgTP~~~dg~aDl~~V~ava~~i~~~~~~~~vvV~KSTVPvGt~~~v~~ 132 (414)
T COG1004 81 FIAVGTPPDEDGSADLSYVEAVAKDIGEILDGKAVVVIKSTVPVGTTEEVRA 132 (414)
T ss_pred EEEcCCCCCCCCCccHHHHHHHHHHHHhhcCCCeEEEEcCCCCCCchHHHHH
Confidence 9999944433443332 3344577668999988754433444433
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.069 Score=60.20 Aligned_cols=109 Identities=17% Similarity=0.244 Sum_probs=67.9
Q ss_pred cCCCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec--CHHHHhccCCEEEEccCCCcccc---
Q 006212 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS--- 298 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~--- 298 (656)
..+|++.|+|+|..|.+ +|+.|+..|++|.++|..... +...+.|+... .-.+.+..+|+|++.--..+...
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~spgi~~~~~~~~ 84 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSSAIPDDNPELV 84 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECCCCCCCCHHHH
Confidence 46789999999999999 799999999999999976532 22344577553 22345678998876532222211
Q ss_pred -------ccccHHHH-hc-CCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 299 -------KIFNDETF-AK-MKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 -------~li~~~~l-~~-mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
.++++.++ .. +++..+|-=+ +.|+--...-+...|+.
T Consensus 85 ~a~~~~i~i~~~~e~~~~~~~~~~~I~ITGTnGKTTTt~ll~~iL~~ 131 (461)
T PRK00421 85 AARELGIPVVRRAEMLAELMRFRTSIAVAGTHGKTTTTSLLAHVLAE 131 (461)
T ss_pred HHHHCCCcEEeHHHHHHHHHccCcEEEEECCCCHHHHHHHHHHHHHh
Confidence 23444333 23 3332333333 45877666655666654
|
|
| >PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.78 E-value=0.072 Score=60.70 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=48.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHHc--CCeec--C-HHHHhccCCEEEEc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAV--GVELV--S-FDQALATADFISLH 290 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~~--g~~~~--~-l~ell~~aDvV~l~ 290 (656)
+.+++|+|+|+|..|.++|+.|+..|.+|.++|..... +...+. |+.+. + ..+.+..+|+|+..
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~L~~~~~~~~~~~g~~~~~~~~~~d~vv~s 76 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGARLRVADTREAPPNLAALRAELPDAEFVGGPFDPALLDGVDLVALS 76 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEEEEEcCCCCchhHHHHHhhcCCcEEEeCCCchhHhcCCCEEEEC
Confidence 56899999999999999999999999999999975421 222333 44432 1 23556789999886
|
|
| >cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.1 Score=42.10 Aligned_cols=59 Identities=12% Similarity=0.309 Sum_probs=43.1
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC----CCHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE----PNQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~----~~~e~l~~L~~ 620 (656)
.|.+...|+||.++.++..|.++++||..+.+.... + .....+.++.+ .+++..++|++
T Consensus 2 ~l~i~~~d~~g~l~~i~~~l~~~~~~I~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~l~~ 64 (70)
T cd04873 2 VVEVYAPDRPGLLADITRVLADLGLNIHDARISTTG-E-RALDVFYVTDSDGRPLDPERIARLEE 64 (70)
T ss_pred EEEEEeCCCCCHHHHHHHHHHHCCCeEEEEEEeecC-C-EEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 356778999999999999999999999999987553 2 55555555433 24455555543
|
This ACT domain family, ACT_UUR_ACR-like, includes the two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the four ACT domains of a novel protein composed almost entirely of ACT domain repeats (the ACR protein) and like proteins. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. This CD also includes the first of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein and related domains, as well as, the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted t |
| >COG4747 ACT domain-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.19 Score=46.02 Aligned_cols=59 Identities=15% Similarity=0.459 Sum_probs=47.1
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
..|-|...|+||-+..|..+|++++||+..+--+-.++ +.|++++.+++- ++..+.|++
T Consensus 70 dVlaVEmeD~PG~l~~I~~vl~d~diNldYiYAFv~ek-~KAlli~r~ed~--d~~~~aLed 128 (142)
T COG4747 70 DVLAVEMEDVPGGLSRIAEVLGDADINLDYIYAFVTEK-QKALLIVRVEDI--DRAIKALED 128 (142)
T ss_pred eEEEEEecCCCCcHHHHHHHHhhcCcCceeeeeeeecC-ceEEEEEEhhHH--HHHHHHHHH
Confidence 34667889999999999999999999999998876665 889999987654 344555544
|
|
| >PRK04523 N-acetylornithine carbamoyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.74 E-value=1.4 Score=47.99 Aligned_cols=65 Identities=25% Similarity=0.167 Sum_probs=47.7
Q ss_pred c-CCCEEEEEecC-------hhHHHHHHHHhcCCCEEEEECC-C---CChhH-------HHHcCC--ee-cCHHHHhccC
Q 006212 227 L-VGKTLAVMGFG-------KVGSEVARRAKGLGMNVIAHDP-Y---APADK-------ARAVGV--EL-VSFDQALATA 284 (656)
Q Consensus 227 l-~gktvGIIGlG-------~IG~~vA~~lk~~G~~Vi~~d~-~---~~~~~-------a~~~g~--~~-~~l~ell~~a 284 (656)
+ .|++|+|+|.| ++..+++..+..+|++|.+..| . .+.+. +.+.|. .. .++++.+++|
T Consensus 166 ~~~g~ki~i~~~gd~~~~~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~a 245 (335)
T PRK04523 166 TLRGKKYVLTWTYHPKPLNTAVANSALLIATRLGMDVTLLCPTPDYILDERYMDWAEQNAAESGGSLTVSHDIDSAYAGA 245 (335)
T ss_pred ccCCCEEEEEEeccCcccccHHHHHHHHHHHHcCCEEEEECCchhhCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 5 68999877643 7888999989999999999988 3 22221 233454 22 4899999999
Q ss_pred CEEEEcc
Q 006212 285 DFISLHM 291 (656)
Q Consensus 285 DvV~l~~ 291 (656)
|+|..-.
T Consensus 246 Dvvy~~~ 252 (335)
T PRK04523 246 DVVYAKS 252 (335)
T ss_pred CEEEece
Confidence 9998743
|
|
| >cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.14 Score=42.61 Aligned_cols=60 Identities=17% Similarity=0.255 Sum_probs=44.4
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC----CC-CHHHHHHHh
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE----EP-NQDSLKEIG 619 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~----~~-~~e~l~~L~ 619 (656)
..+.+..+|+||...+++.+|+.+|+||..-++... .++.++-.+.+.+ ++ +++.+++|+
T Consensus 2 ~~i~v~~~Dr~gLl~~i~~~l~~~~l~I~~A~i~T~-~~~~v~D~F~v~~~~~~~~~~~~~~~~l~ 66 (73)
T cd04900 2 TEVFIYTPDRPGLFARIAGALDQLGLNILDARIFTT-RDGYALDTFVVLDPDGEPIGERERLARIR 66 (73)
T ss_pred EEEEEEecCCCCHHHHHHHHHHHCCCCeEEeEEEEe-CCCeEEEEEEEECCCCCCCChHHHHHHHH
Confidence 356778899999999999999999999999999755 3566766666522 22 345555554
|
This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.097 Score=57.41 Aligned_cols=87 Identities=31% Similarity=0.400 Sum_probs=60.2
Q ss_pred cCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHc-CCeec-CHHHHhccCCEEEEccCCC
Q 006212 227 LVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLHMPLN 294 (656)
Q Consensus 227 l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~~Plt 294 (656)
|.||||||+|+-- --..++++|+..|.+|.+|||.......... ++.+. +++++++.||++++++. -
T Consensus 308 l~Gk~iavlgLafKpnTDD~ReSpa~~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~te-w 386 (414)
T COG1004 308 LKGKTIAVLGLAFKPNTDDMRESPALDIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTE-W 386 (414)
T ss_pred CCCcEEEEEEEeecCCCccchhchHHHHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEecc-H
Confidence 9999999999853 4567899999999999999997643322221 24554 89999999999999875 2
Q ss_pred ccccccccHHHHhcCCCCcEEEE
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailIN 317 (656)
++-+.+ +-+.+ .|| +..++|
T Consensus 387 ~ef~~~-d~~~~-~m~-~~~v~D 406 (414)
T COG1004 387 DEFRDL-DFEKL-LMK-TPVVID 406 (414)
T ss_pred HHHhcc-Chhhh-hcc-CCEEEe
Confidence 233322 22233 455 445555
|
|
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.066 Score=60.07 Aligned_cols=122 Identities=24% Similarity=0.358 Sum_probs=75.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-----hHHHHcCCeec---CHHHHhccCCEEEEccCCCcccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV---SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-----~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
..||+|.|+|+|.-|.++|+.|+..|++|.++|..... ......++.+. ..++.+.++|+|++. |.-+-+.
T Consensus 5 ~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~S-PGi~~~~ 83 (448)
T COG0771 5 FQGKKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKS-PGIPPTH 83 (448)
T ss_pred ccCCEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEEC-CCCCCCC
Confidence 44999999999999999999999999999999966522 11223455443 122678899999875 3333333
Q ss_pred ccc-----------cHH-HHhcC-CCCcEEEEcC-CCchhcHHHHHHhHhc--------CCeEEEEeeccCCC
Q 006212 299 KIF-----------NDE-TFAKM-KKGVRIVNVA-RGGVIDEEALVRALDS--------GVVAQAALDVFTEE 349 (656)
Q Consensus 299 ~li-----------~~~-~l~~m-K~gailINva-Rg~ivde~aL~~aL~~--------g~i~gA~lDV~~~E 349 (656)
.++ ++- .+.+. ++..+|-=+| -|+--.+.-+...|++ |.|+..++|+...+
T Consensus 84 p~v~~A~~~gi~i~~dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~l~~~~~~ 156 (448)
T COG0771 84 PLVEAAKAAGIEIIGDIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPALELLEQA 156 (448)
T ss_pred HHHHHHHHcCCcEEeHHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccHHHhhccc
Confidence 332 222 22222 2344554455 4666545544555544 34555778887764
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.64 E-value=0.12 Score=55.56 Aligned_cols=46 Identities=28% Similarity=0.488 Sum_probs=38.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|++|.|+|.|.+|...++.++..|. +|++.|... ..+.++++|+.
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 58999999999999999999999998 688888765 45566777763
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.23 Score=53.38 Aligned_cols=89 Identities=16% Similarity=0.209 Sum_probs=56.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHc-------C---Cee-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAV-------G---VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~-------g---~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
.+|+|||.|.+|..+|..+...| -++..||.+.... .+.++ . +.. .+.++ +++||+|+++.-..
T Consensus 4 ~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~~ 82 (312)
T cd05293 4 NKVTVVGVGQVGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGAR 82 (312)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCCC
Confidence 58999999999999999887555 4799999765321 11111 1 111 24554 89999999965432
Q ss_pred c---cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 295 P---TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~---~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
. +++. ++ |. +.+....|.+++++++
T Consensus 83 ~k~g~~R~dll~~N~~i~~~~~~~i~~~~p~~~vivvs 120 (312)
T cd05293 83 QNEGESRLDLVQRNVDIFKGIIPKLVKYSPNAILLVVS 120 (312)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEcc
Confidence 1 2331 11 11 2233356788999997
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.14 Score=54.50 Aligned_cols=90 Identities=22% Similarity=0.240 Sum_probs=65.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccc---c----
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTS---K---- 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~---~---- 299 (656)
.|++++|||-=.--..++++|.+.|++|..+.-.. +.....|+... +.++++++||+|++-+|.+.+.. .
T Consensus 1 ~~~~~~v~ggd~r~~~~~~~l~~~G~~v~~~g~~~--~~~~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~ 78 (296)
T PRK08306 1 TGKHIAVIGGDARQLELIRKLVELGAKVSLVGFDQ--LDHGFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSN 78 (296)
T ss_pred CCcEEEEEcCcHHHHHHHHHHHHCCCEEEEEeccc--cccccCCceeeccHHHHhccCCEEEECCccccCCceeeccccc
Confidence 47899999999999999999999999998753211 11123477766 67888999999999988654321 1
Q ss_pred ---cccHHHHhcCCCCcEEEEcCC
Q 006212 300 ---IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 300 ---li~~~~l~~mK~gailINvaR 320 (656)
-++.+.++.||+++.++ ++.
T Consensus 79 ~~~~~~~~~l~~l~~~~~v~-~G~ 101 (296)
T PRK08306 79 EKLVLTEELLELTPEHCTIF-SGI 101 (296)
T ss_pred cCCcchHHHHHhcCCCCEEE-Eec
Confidence 13577899999998544 443
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.066 Score=57.34 Aligned_cols=64 Identities=20% Similarity=0.201 Sum_probs=46.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHcC-C-------e-e-cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAVG-V-------E-L-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~g-~-------~-~-~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...| .+|..+|+..... .+.++. . . . .+. +.+++||+|+++++..
T Consensus 1 mkI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 1 MKVAIVGAGFVGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 37999999999999999998877 5899999875321 121111 1 0 1 134 5589999999999853
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >COG5322 Predicted dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.13 Score=53.65 Aligned_cols=112 Identities=21% Similarity=0.199 Sum_probs=71.1
Q ss_pred HHHHhchhHHHHHHHccccccccccccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC---Chh----HHHHc
Q 006212 199 ASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA---PAD----KARAV 270 (656)
Q Consensus 199 L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~---~~~----~a~~~ 270 (656)
.+.+|++.+..+ ..|.+|...|++|+|+ |.||..+|+.+.+.+.+....-+.. ..+ .-..+
T Consensus 148 yaa~r~Vl~~~~-----------~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ll~r~aea~~rq~l~~l~e~~ 216 (351)
T COG5322 148 YAACRQVLKHFA-----------QLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKELLLRDAEARNRQRLTLLQEEL 216 (351)
T ss_pred HHHHHHHHHHHH-----------HhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEEEecccHHhhhhhhhhhccccc
Confidence 345676655443 2589999999999997 9999999999998766544432211 111 11122
Q ss_pred CCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 271 GVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 271 g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
|-. ..+++..+.+.|+++-..... +-..|+.. .+|||+.|+|-++-.=+|+
T Consensus 217 ~~~~i~s~d~~~~~e~i~v~vAs~~--~g~~I~pq---~lkpg~~ivD~g~P~dvd~ 268 (351)
T COG5322 217 GRGKIMSLDYALPQEDILVWVASMP--KGVEIFPQ---HLKPGCLIVDGGYPKDVDT 268 (351)
T ss_pred CCCeeeeccccccccceEEEEeecC--CCceechh---hccCCeEEEcCCcCccccc
Confidence 332 347777666666665544322 23445554 3699999999998765554
|
|
| >COG0788 PurU Formyltetrahydrofolate hydrolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.053 Score=56.21 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=48.6
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCC
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPN 611 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~ 611 (656)
+...|.+..+|+||++++|++.|.++|.||..-.-+....++.=+|+++++.+-.
T Consensus 6 ~~~~LtvsCpd~~GiVaais~~l~~~g~NI~~~~qf~D~~~g~FFmR~~f~~~~~ 60 (287)
T COG0788 6 DTFILTVSCPDQPGIVAAISGFLAEHGCNIVDSDQFDDPETGRFFMRVEFEGEGG 60 (287)
T ss_pred cceEEEEecCCCCCcHHHHHHHHHHcCCceeecccccccccCeEEEEEEEecCCC
Confidence 4578889999999999999999999999999988886666888899999887655
|
|
| >PRK06019 phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed | Back alignment and domain information |
|---|
Probab=94.55 E-value=0.08 Score=58.07 Aligned_cols=61 Identities=25% Similarity=0.362 Sum_probs=44.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCC--eecC---HHHHhccCCEEEE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGV--ELVS---FDQALATADFISL 289 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~--~~~~---l~ell~~aDvV~l 289 (656)
.++|||||-|..|+.++..++.+|++|+++|++... ....+.-+ .+.+ +.++++.||+|+.
T Consensus 2 ~~~igilG~Gql~~ml~~aa~~lG~~v~~~d~~~~~pa~~~ad~~~~~~~~D~~~l~~~a~~~dvit~ 69 (372)
T PRK06019 2 MKTIGIIGGGQLGRMLALAAAPLGYKVIVLDPDPDSPAAQVADEVIVADYDDVAALRELAEQCDVITY 69 (372)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchhHhCceEEecCCCCHHHHHHHHhcCCEEEe
Confidence 479999999999999999999999999999987522 11111101 1223 6678899999864
|
|
| >PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=2.1 Score=51.23 Aligned_cols=159 Identities=19% Similarity=0.178 Sum_probs=105.8
Q ss_pred cCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-
Q 006212 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (656)
Q Consensus 175 ~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~- 253 (656)
..|.|.|.-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 152 ~~ip~f~DD~---~GTa~v~lA~l~na~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 210 (752)
T PRK07232 152 MDIPVFHDDQ---HGTAIISAAALLNALE------------------LVGKKIEDVKIVVSGAGAAAIACLNLLVALGAK 210 (752)
T ss_pred cCCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECccHHHHHHHHHHHHcCCC
Confidence 4799999833 3344456777777666 34678889999999999999999999998888
Q ss_pred --EEEEECCCC--C------hhHHHH---cCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 254 --NVIAHDPYA--P------ADKARA---VGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 254 --~Vi~~d~~~--~------~~~a~~---~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
+++.+|.+- . ....+. ..-...+|.|+++.+|+++=. . +-+.++++.++.|.+.++|.=.+.
T Consensus 211 ~~~i~~~D~~G~i~~~r~~~~~~~k~~~a~~~~~~~l~~~i~~~~v~iG~-s----~~g~~~~~~v~~M~~~piifalsN 285 (752)
T PRK07232 211 KENIIVCDSKGVIYKGRTEGMDEWKAAYAVDTDARTLAEAIEGADVFLGL-S----AAGVLTPEMVKSMADNPIIFALAN 285 (752)
T ss_pred cccEEEEcCCCeecCCCcccccHHHHHHhccCCCCCHHHHHcCCCEEEEc-C----CCCCCCHHHHHHhccCCEEEecCC
Confidence 788888542 1 111111 111234899999999988653 2 247899999999999999999986
Q ss_pred Cchh-cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 321 GGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 321 g~iv-de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
-..- ..++.++ ...+.|.+.|- ...| =+-.|+++-|-++
T Consensus 286 P~~E~~p~~a~~-~~~~~i~atGr---s~~p-------nQ~NN~~~FPgi~ 325 (752)
T PRK07232 286 PDPEITPEEAKA-VRPDAIIATGR---SDYP-------NQVNNVLCFPYIF 325 (752)
T ss_pred CCccCCHHHHHH-hcCCEEEEECC---cCCC-------Ccccceeecchhh
Confidence 5432 2222222 23345655551 1112 1245777777665
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.099 Score=56.87 Aligned_cols=87 Identities=18% Similarity=0.331 Sum_probs=54.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcC-CCEEEE-ECCCCChh-HHHHc-------CCeecCHHH-HhccCCEEEEccCCCccc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGL-GMNVIA-HDPYAPAD-KARAV-------GVELVSFDQ-ALATADFISLHMPLNPTT 297 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~-~a~~~-------g~~~~~l~e-ll~~aDvV~l~~Plt~~T 297 (656)
++|+|+|. |.+|+.+++.+..+ ++++.+ +++....+ ..... +..+.++++ .+.++|+|++|+|... .
T Consensus 3 ~kVaIiGAtG~vG~~l~~~L~~~p~~elv~v~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~-~ 81 (343)
T PRK00436 3 IKVGIVGASGYTGGELLRLLLNHPEVEIVAVTSRSSAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGV-S 81 (343)
T ss_pred eEEEEECCCCHHHHHHHHHHHcCCCceEEEEECccccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHH-H
Confidence 58999996 99999999999877 678755 55432111 11111 111223333 4578999999999431 1
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg 321 (656)
..+ ....++.|+.+||.+..
T Consensus 82 ~~~----v~~a~~aG~~VID~S~~ 101 (343)
T PRK00436 82 MDL----APQLLEAGVKVIDLSAD 101 (343)
T ss_pred HHH----HHHHHhCCCEEEECCcc
Confidence 111 12224679999999843
|
|
| >PRK06027 purU formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.41 E-value=0.11 Score=55.25 Aligned_cols=65 Identities=17% Similarity=0.134 Sum_probs=47.1
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC---CCCH-HHHHHHhcCC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EPNQ-DSLKEIGKVP 622 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~---~~~~-e~l~~L~~~~ 622 (656)
.+.+.+.-+|+||+++.|++.|+++|+||.+++..+...++.-.|++.++- +.+. ++.+.|.++.
T Consensus 6 ~~vitv~G~DrpGIVa~Vt~~La~~g~NI~d~s~~~~~~~g~F~m~i~v~~~~~~~~~~~L~~~L~~l~ 74 (286)
T PRK06027 6 RYVLTLSCPDRPGIVAAVSNFLYEHGGNIVDADQFVDPETGRFFMRVEFEGDGLIFNLETLRADFAALA 74 (286)
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHCCCCEEEceeEEcCCCCeEEEEEEEEeCCCCCCHHHHHHHHHHHH
Confidence 355667789999999999999999999999999987444556666656554 2232 4555555554
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.097 Score=56.71 Aligned_cols=63 Identities=17% Similarity=0.254 Sum_probs=44.3
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCChhHHHHc-CCe-ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
-++||||+|.||+. .+..++.. ++++.+ +|+.... .+... +.. +.+++++++ +.|+|++|+|.
T Consensus 5 irvgiiG~G~i~~~~~~~~~~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~ell~~~~vD~V~I~tp~ 74 (346)
T PRK11579 5 IRVGLIGYGYASKTFHAPLIAGTPGLELAAVSSSDATK-VKADWPTVTVVSEPQHLFNDPNIDLIVIPTPN 74 (346)
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCCHHH-HHhhCCCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 37999999999985 56666654 788876 6776422 12223 333 458999996 57999999993
|
|
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.11 Score=58.65 Aligned_cols=72 Identities=21% Similarity=0.190 Sum_probs=52.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec--CHHHHhccCCEEEEccCCCc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV--SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~ 295 (656)
+..+.++++.|||.|.+|.++|+.|+..|++|.++|.... .+..++.|+.+. .-.+....+|+|+++.-..+
T Consensus 11 ~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~Gi~~ 90 (480)
T PRK01438 11 HSDWQGLRVVVAGLGVSGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPGWRP 90 (480)
T ss_pred ccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCCcCC
Confidence 4567899999999999999999999999999999986531 122445677553 11124557999998864433
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.19 Score=54.68 Aligned_cols=106 Identities=22% Similarity=0.273 Sum_probs=61.1
Q ss_pred EEEEEecChhHHHHHHHHhcC----------CCEEEE-ECCC--------CChhHH----HHcCC--------eecCHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL----------GMNVIA-HDPY--------APADKA----RAVGV--------ELVSFDQ 279 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~----------G~~Vi~-~d~~--------~~~~~a----~~~g~--------~~~~l~e 279 (656)
+|||+|+|.||+.+++.++.. +++|.+ +|+. ...+.+ ...+. ...++++
T Consensus 4 ~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~e 83 (341)
T PRK06270 4 KIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLE 83 (341)
T ss_pred EEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHH
Confidence 799999999999999998743 577665 4532 122221 11221 0137888
Q ss_pred Hh--ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhcC
Q 006212 280 AL--ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (656)
Q Consensus 280 ll--~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~g 336 (656)
++ .+.|+|+.|+|....+...--.-....|+.|.-+|-...+.+. ..++|.++.++.
T Consensus 84 ll~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL~~~A~~~ 143 (341)
T PRK06270 84 VIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKELKELAKKN 143 (341)
T ss_pred HhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHHHHHHHHc
Confidence 87 4689999999954432211111223445667666554343332 345666655543
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.12 Score=55.75 Aligned_cols=47 Identities=21% Similarity=0.236 Sum_probs=38.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC---C-ChhHHHHcCCee
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY---A-PADKARAVGVEL 274 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~---~-~~~~a~~~g~~~ 274 (656)
.|+++.|+|.|.+|...++.++..|.+|++.++. . ..+.+++.|+..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 5889999999999999999999999999999873 2 334566667643
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.092 Score=57.08 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=33.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D 57 (338)
T PRK12475 20 RKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRD 57 (338)
T ss_pred HhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 36899999999999999999999999997 78888875
|
|
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=94.30 E-value=0.15 Score=54.33 Aligned_cols=87 Identities=21% Similarity=0.226 Sum_probs=55.9
Q ss_pred EEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHcC----------Cee--cCHHHHhccCCEEEEccCCCccc
Q 006212 232 LAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVG----------VEL--VSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~g----------~~~--~~l~ell~~aDvV~l~~Plt~~T 297 (656)
|+|||.|.+|..+|..+...| .++..+|.......+.... ... .+-.+.+++||+|+++... +..
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~~~~l~~aDiVIitag~-p~~ 79 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGDYADAADADIVVITAGA-PRK 79 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCCHHHhCCCCEEEEcCCC-CCC
Confidence 589999999999999998777 5899999875432222111 111 1114689999999999873 332
Q ss_pred cccc-------cH-------HHHhcCCCCcEEEEcC
Q 006212 298 SKIF-------ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li-------~~-------~~l~~mK~gailINva 319 (656)
.++- |. ..+....|++++++++
T Consensus 80 ~~~~R~~l~~~n~~i~~~~~~~i~~~~p~~~viv~s 115 (300)
T cd00300 80 PGETRLDLINRNAPILRSVITNLKKYGPDAIILVVS 115 (300)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 2221 11 1222345788899987
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.2 Score=52.08 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=57.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
-++-|+|-|.+++.+|+.++.+|++|.++|++.... . ...+..++.+....| .+.+..+
T Consensus 101 ~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~~~--~---------~~~~~~~~~~~~~~~----------~~~~~~~ 159 (246)
T TIGR02964 101 PHVVLFGAGHVGRALVRALAPLPCRVTWVDSREAEF--P---------EDLPDGVATLVTDEP----------EAEVAEA 159 (246)
T ss_pred CEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcccc--c---------ccCCCCceEEecCCH----------HHHHhcC
Confidence 479999999999999999999999999999874210 0 011123333322222 2233345
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~ 334 (656)
.++..+|=+.++.-.|.+.|..+|+
T Consensus 160 ~~~t~vvi~th~h~~D~~~L~~aL~ 184 (246)
T TIGR02964 160 PPGSYFLVLTHDHALDLELCHAALR 184 (246)
T ss_pred CCCcEEEEEeCChHHHHHHHHHHHh
Confidence 5677777778888889999988884
|
Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products. |
| >cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.12 Score=43.13 Aligned_cols=60 Identities=12% Similarity=0.261 Sum_probs=42.1
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CH---HHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQ---DSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~---e~l~~L~~ 620 (656)
+++.-+|+||.++.|.+.++++++||..++-..... .++-...++++... +. ++++.|++
T Consensus 2 l~~~l~d~pG~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 2 LVFSLKNKPGALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred EEEEeCCcCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 456678999999999999999999999995533222 34445557776542 22 56666665
|
ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.073 Score=61.59 Aligned_cols=69 Identities=20% Similarity=0.376 Sum_probs=51.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CH---HH-HhccCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SF---DQ-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l---~e-ll~~aDvV~l~~Plt~~T~ 298 (656)
..+-|+|+|++|+.+|+.|+..|.+|++.|.+. ..+.+++.|+..+ +. ++ -+++||.++++++...++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~ 496 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAG 496 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHH
Confidence 468899999999999999999999999999876 3455666676432 22 22 2578998988888554433
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.071 Score=56.75 Aligned_cols=60 Identities=18% Similarity=0.339 Sum_probs=42.0
Q ss_pred EEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc---------CC----ee-cCHHHHhccCCEEEEccC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV---------GV----EL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~---------g~----~~-~~l~ell~~aDvV~l~~P 292 (656)
|+|||.|.+|..+|..+...|. +|+.+|.......+... +. .. .+.+ .+++||+|++++.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~~-~l~dADiVIit~g 75 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDYE-DIAGSDVVVITAG 75 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCHH-HhCCCCEEEEecC
Confidence 6899999999999998886554 99999987532211111 11 11 2444 5899999999874
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.071 Score=54.51 Aligned_cols=37 Identities=24% Similarity=0.262 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|.+|..+|+.|...|. ++..+|+.
T Consensus 17 ~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 17 EKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46889999999999999999999998887 67777753
|
Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1). |
| >cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.12 Score=38.15 Aligned_cols=57 Identities=21% Similarity=0.303 Sum_probs=40.5
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC-CCHHHHHHH
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE-PNQDSLKEI 618 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~-~~~e~l~~L 618 (656)
.+..+|+||.+.++...|.++++||..+...........-+.+.++.. ..+.++++|
T Consensus 2 ~i~~~~~~~~l~~i~~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 59 (60)
T cd02116 2 TVSGPDRPGLLAKVLSVLAEAGINITSIEQRTSGDGGEADIFIVVDGDGDLEKLLEAL 59 (60)
T ss_pred EEEecCCCchHHHHHHHHHHCCCcEEEEEeEEcCCCCeEEEEEEEechHHHHHHHHHh
Confidence 356778999999999999999999999998654434445555666654 333444443
|
Members of this CD belong to the superfamily of ACT regulatory domains. Pairs of ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme. The ACT domain has been detected in a number of diverse proteins; some of these proteins are involved in amino acid and purine biosynthesis, phenylalanine hydroxylation, regulation of bacterial metabolism and transcription, and many remain to be characterized. ACT domain-containing enzymes involved in amino acid and purine synthesis are in many cases allosteric enzymes with complex regulation enforced by the binding of ligands. The ACT domain is commonly involved in the binding of a small regulatory molecule, such as the amino acids L-Ser and L-Phe in the case of D-3-phosphoglycerate dehydrogenase and the bifunctional chorismate mutase-p |
| >PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated | Back alignment and domain information |
|---|
Probab=94.14 E-value=1.1 Score=49.84 Aligned_cols=65 Identities=26% Similarity=0.336 Sum_probs=49.2
Q ss_pred ccCCCEEEEEec-----C---hhHHHHHHHHhcCCCEEEEECCCC---Chh---H----HHHcCC--ee-cCHHHHhccC
Q 006212 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PAD---K----ARAVGV--EL-VSFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIGl-----G---~IG~~vA~~lk~~G~~Vi~~d~~~---~~~---~----a~~~g~--~~-~~l~ell~~a 284 (656)
.+.|+||+|+|- | ++..+++..+..+|++|....|.. ..+ . +++.|. .. .++++.+++|
T Consensus 184 ~l~g~kVaivg~~~~~~g~~~~Va~Sl~~~~~~lG~~v~~~~P~~~~~~~~i~~~a~~~~~~~G~~i~~~~d~~eav~~a 263 (395)
T PRK07200 184 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLMPEVVEVAKKNAKASGGSFRQVNSMEEAFKDA 263 (395)
T ss_pred ccCCCEEEEEeccccccCCcchHHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhCCC
Confidence 478999999985 5 566899999899999999988763 122 1 233454 22 4899999999
Q ss_pred CEEEEc
Q 006212 285 DFISLH 290 (656)
Q Consensus 285 DvV~l~ 290 (656)
|+|..-
T Consensus 264 DvVYtd 269 (395)
T PRK07200 264 DIVYPK 269 (395)
T ss_pred CEEEEc
Confidence 999885
|
|
| >PRK12862 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=94.12 E-value=2.7 Score=50.64 Aligned_cols=157 Identities=17% Similarity=0.115 Sum_probs=106.2
Q ss_pred cCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-
Q 006212 175 FGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM- 253 (656)
Q Consensus 175 ~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~- 253 (656)
.+|.|.|.-- .-+|=.+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 160 ~~ip~f~DD~---~GTa~v~la~l~~a~~------------------~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~ 218 (763)
T PRK12862 160 MKIPVFHDDQ---HGTAIIVAAALLNGLK------------------LVGKDIEDVKLVASGAGAAALACLDLLVSLGVK 218 (763)
T ss_pred CCCceEecCc---ccHHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChhHHHHHHHHHHHHcCCC
Confidence 3699999843 3344456777777665 34678889999999999999999999998888
Q ss_pred --EEEEECCCC----------Ch---hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 254 --NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 254 --~Vi~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+++.+|..- .. ..++.. ...+|.|+++.+|+++=+- +-+.++++.++.|.+.++|.=.
T Consensus 219 ~~~i~~~D~~G~i~~~r~~~l~~~~~~~a~~~--~~~~l~e~~~~~~v~iG~s-----~~g~~~~~~v~~M~~~piifal 291 (763)
T PRK12862 219 RENIWVTDIKGVVYEGRTELMDPWKARYAQKT--DARTLAEVIEGADVFLGLS-----AAGVLKPEMVKKMAPRPLIFAL 291 (763)
T ss_pred cccEEEEcCCCeeeCCCCccccHHHHHHhhhc--ccCCHHHHHcCCCEEEEcC-----CCCCCCHHHHHHhccCCEEEeC
Confidence 788888531 11 112221 3348999999999986532 2478999999999999999999
Q ss_pred CCCchh-cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC
Q 006212 319 ARGGVI-DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 319 aRg~iv-de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
+.-..- ..++.+++ ..+.|.+.|-. ..| =+..|+++-|-++
T Consensus 292 sNP~~E~~p~~a~~~-~~~~i~atGrs---~~p-------~Q~NN~~~FPgi~ 333 (763)
T PRK12862 292 ANPTPEILPEEARAV-RPDAIIATGRS---DYP-------NQVNNVLCFPYIF 333 (763)
T ss_pred CCCcccCCHHHHHHh-cCCEEEEECCc---CCC-------Ccccceeeccchh
Confidence 864432 22222332 22456555511 111 1245777888765
|
|
| >cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains | Back alignment and domain information |
|---|
Probab=94.10 E-value=0.16 Score=41.30 Aligned_cols=58 Identities=14% Similarity=0.254 Sum_probs=41.7
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe----CCCCCHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV----DEEPNQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~----D~~~~~e~l~~L~~ 620 (656)
+.+...|+||.++.|+..|.++++||..+++.... +..+..+.+ ..+.+.+.+++|++
T Consensus 3 l~v~~~d~~gll~~i~~~l~~~~~~I~~~~~~~~~--~~~~~~f~i~~~~~~~~~~~~~~~i~~ 64 (70)
T cd04899 3 LELTALDRPGLLADVTRVLAELGLNIHSAKIATLG--ERAEDVFYVTDADGQPLDPERQEALRA 64 (70)
T ss_pred EEEEEcCCccHHHHHHHHHHHCCCeEEEEEEEecC--CEEEEEEEEECCCCCcCCHHHHHHHHH
Confidence 56678999999999999999999999999986443 355554433 22344556665543
|
This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.11 Score=57.47 Aligned_cols=94 Identities=19% Similarity=0.259 Sum_probs=59.9
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcC-CCEEEEECCCCCh-hHHHHcC-------C-eecCHHH-HhccCCEEEEccCCC
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGL-GMNVIAHDPYAPA-DKARAVG-------V-ELVSFDQ-ALATADFISLHMPLN 294 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~-G~~Vi~~d~~~~~-~~a~~~g-------~-~~~~l~e-ll~~aDvV~l~~Plt 294 (656)
...++|+|+|. |.+|+.+.+.|... +++|..+...... +...... . ...+++. .++++|+|++|+|..
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~ 115 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG 115 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH
Confidence 35568999997 99999999999987 7888776433211 1101111 1 1112222 258899999999943
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
...+....|+.|+.+||.+..-..+.
T Consensus 116 ------~s~~i~~~~~~g~~VIDlSs~fRl~~ 141 (381)
T PLN02968 116 ------TTQEIIKALPKDLKIVDLSADFRLRD 141 (381)
T ss_pred ------HHHHHHHHHhCCCEEEEcCchhccCC
Confidence 33445555678899999985544443
|
|
| >PRK13011 formyltetrahydrofolate deformylase; Reviewed | Back alignment and domain information |
|---|
Probab=94.00 E-value=0.17 Score=53.79 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=44.5
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCCCH-HHHHHHhcC
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQ-DSLKEIGKV 621 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~~~-e~l~~L~~~ 621 (656)
.+.+.+..+|+||+|+.|++.|+++++||.+++..-...++.=.|.++++ ...+. ++-+.|.++
T Consensus 7 ~~vitv~G~DrpGIVa~VT~~La~~~vNI~dls~~~~~~~~~F~m~~~~~~p~~~~~~~L~~~L~~l 73 (286)
T PRK13011 7 TFVLTLSCPSAAGIVAAVTGFLAEHGCYITELHSFDDRLSGRFFMRVEFHSEEGLDEDALRAGFAPI 73 (286)
T ss_pred eEEEEEEeCCCCCHHHHHHHHHHhCCCCEEEeeeeecCCCCeEEEEEEEecCCCCCHHHHHHHHHHH
Confidence 34566778999999999999999999999999986333344445566664 33334 444444444
|
|
| >cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=93.96 E-value=0.21 Score=41.86 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=43.4
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC-----CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE-----EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~-----~~-~~e~l~~L~~ 620 (656)
+=+..+|+||.++.|+..|.++|+||..-++... ++..+..+.+.+ +. +++.+++|++
T Consensus 3 ~~v~~~Dr~gLl~~i~~~l~~~~lnI~~A~i~t~--~~~~~d~f~V~d~~~~~~~~~~~~~~~i~~ 66 (74)
T cd04925 3 IELTGTDRPGLLSEVFAVLADLHCNVVEARAWTH--NGRLACVIYVRDEETGAPIDDPIRLASIED 66 (74)
T ss_pred EEEEECCCCCHHHHHHHHHHHCCCcEEEEEEEEE--CCEEEEEEEEEcCcCCCCCCCHHHHHHHHH
Confidence 3456789999999999999999999999999854 677777766532 12 4455555543
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.19 Score=53.26 Aligned_cols=93 Identities=19% Similarity=0.267 Sum_probs=61.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC---C--eecCHHHH--hccCCEEEEccCCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG---V--ELVSFDQA--LATADFISLHMPLN 294 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g---~--~~~~l~el--l~~aDvV~l~~Plt 294 (656)
..+.|+++.|+|.|-.+++++..|+..|. +|.+++|.... +.+...+ . ....+.++ ..++|+|+.++|..
T Consensus 122 ~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~G 201 (283)
T COG0169 122 VDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVG 201 (283)
T ss_pred cccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCC
Confidence 45679999999999999999999999995 79999987532 2222222 1 12223222 22699999999965
Q ss_pred ccccc---cccHHHHhcCCCCcEEEEcCC
Q 006212 295 PTTSK---IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~~T~~---li~~~~l~~mK~gailINvaR 320 (656)
-.-.. .+. ...++++.++.|+--
T Consensus 202 m~~~~~~~~~~---~~~l~~~~~v~D~vY 227 (283)
T COG0169 202 MAGPEGDSPVP---AELLPKGAIVYDVVY 227 (283)
T ss_pred CCCCCCCCCCc---HHhcCcCCEEEEecc
Confidence 43221 222 344677777777643
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.23 Score=53.05 Aligned_cols=109 Identities=17% Similarity=0.153 Sum_probs=68.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc-CCeec------------CHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV-GVELV------------SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~-g~~~~------------~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|+|.|.||+-+|-+|...|.+|..+++.. ..+...+. |+... .-.+.....|+|++|+=..
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~- 81 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY- 81 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-
Confidence 479999999999999999999999999998864 33322222 33211 1112245789999987532
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
++...+ +.....+.+++.++-+--| +-.++.+.+.+...++.++
T Consensus 82 ~~~~al-~~l~~~l~~~t~vv~lQNG-v~~~e~l~~~~~~~~v~~g 125 (305)
T PRK05708 82 DAEPAV-ASLAHRLAPGAELLLLQNG-LGSQDAVAARVPHARCIFA 125 (305)
T ss_pred hHHHHH-HHHHhhCCCCCEEEEEeCC-CCCHHHHHHhCCCCcEEEE
Confidence 233222 2333446778877766433 3346667777766556554
|
|
| >PRK10637 cysG siroheme synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.72 E-value=0.16 Score=57.40 Aligned_cols=91 Identities=15% Similarity=0.036 Sum_probs=66.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHc-CCeec--C-HHHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--S-FDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~-g~~~~--~-l~ell~~aDvV~l~~Plt~~T 297 (656)
-.+|.||+|.|||-|.++..=++.|..+|.+|.++.|....+. .... .+.+. + .++.++.+++|+.|+....
T Consensus 7 ~~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~-- 84 (457)
T PRK10637 7 FCQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAWADAGMLTLVEGPFDESLLDTCWLAIAATDDDA-- 84 (457)
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCEEEEECCCCHH--
Confidence 3589999999999999999888888899999999998764432 1222 23322 1 2455788999888876433
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|......++...+++|++
T Consensus 85 ---~n~~i~~~a~~~~~lvN~~ 103 (457)
T PRK10637 85 ---VNQRVSEAAEARRIFCNVV 103 (457)
T ss_pred ---HhHHHHHHHHHcCcEEEEC
Confidence 5666666676667888876
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.13 Score=60.06 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=63.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH---H-HhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD---Q-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~---e-ll~~aDvV~l~~Plt~~T~ 298 (656)
...+-|+|+|++|+.+|+.|+..|.++++.|.+. ..+.+++.|.... +.+ + -+.+||.++++++..+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~ 479 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTM 479 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHH
Confidence 3579999999999999999999999999999876 3455666776432 222 2 2679999999999655443
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++ ....++.|...++--+|
T Consensus 480 ~i~--~~~r~~~p~~~IiaRa~ 499 (601)
T PRK03659 480 KIV--ELCQQHFPHLHILARAR 499 (601)
T ss_pred HHH--HHHHHHCCCCeEEEEeC
Confidence 332 23444556666665544
|
|
| >PRK08192 aspartate carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.4 Score=48.07 Aligned_cols=67 Identities=19% Similarity=0.285 Sum_probs=48.7
Q ss_pred ccccCCCEEEEEec---ChhHHHHHHHHh-cCCCEEEEECCCC---Chh---HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 224 GVSLVGKTLAVMGF---GKVGSEVARRAK-GLGMNVIAHDPYA---PAD---KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 224 g~~l~gktvGIIGl---G~IG~~vA~~lk-~~G~~Vi~~d~~~---~~~---~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
|..+.|+||++||= +++..+++..+. -+|++|....|.. +.+ .+.+.|.. . .++++.+++||+|..-
T Consensus 154 g~~l~g~kia~vGD~~~~rv~~Sl~~~l~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~ea~~~aDvvyt~ 233 (338)
T PRK08192 154 GRGIDGMHIAMVGDLKFGRTVHSLSRLLCMYKNVSFTLVSPKELAMPDYVISDIENAGHKITITDQLEGNLDKADILYLT 233 (338)
T ss_pred CCCcCCCEEEEECcCCCCchHHHHHHHHHHhcCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEEc
Confidence 33588999999998 578888888766 4499998887753 222 23344543 2 4899999999999883
|
|
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.21 Score=55.86 Aligned_cols=64 Identities=20% Similarity=0.204 Sum_probs=44.4
Q ss_pred CEEEEEecChhHHHHHH---HH---hcCCCEEEEECCCCCh-hHH--------HHcCC----e-ecCHHHHhccCCEEEE
Q 006212 230 KTLAVMGFGKVGSEVAR---RA---KGLGMNVIAHDPYAPA-DKA--------RAVGV----E-LVSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~---~l---k~~G~~Vi~~d~~~~~-~~a--------~~~g~----~-~~~l~ell~~aDvV~l 289 (656)
.+|+|||.|.+|...+. .+ ...|.+|..||+.... +.. ...+. . ..++++.++.||+|+.
T Consensus 1 ~KIaIIGaGs~G~a~a~~~~i~~~~~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ 80 (423)
T cd05297 1 IKIAFIGAGSVVFTKNLVGDLLKTPELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVIN 80 (423)
T ss_pred CeEEEECCChHHhHHHHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEE
Confidence 37999999999998665 22 2236799999987522 111 11121 2 2378899999999999
Q ss_pred ccCC
Q 006212 290 HMPL 293 (656)
Q Consensus 290 ~~Pl 293 (656)
++|.
T Consensus 81 ai~~ 84 (423)
T cd05297 81 TIQV 84 (423)
T ss_pred eeEe
Confidence 9994
|
linked to 3D####ucture |
| >cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.23 Score=41.37 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
+.++|..+|+||..+.+++.|..++.||-.-++... ++|.++-.+.+-+
T Consensus 2 ~eI~V~~~Dr~gLFa~iag~L~~~~LnI~~A~i~tt-~dG~~LDtF~V~d 50 (68)
T cd04928 2 HEITFAAGDKPKLLSQLSSLLGDLGLNIAEAHAFST-DDGLALDIFVVTG 50 (68)
T ss_pred EEEEEEECCCcchHHHHHHHHHHCCCceEEEEEEEc-CCCeEEEEEEEec
Confidence 578888999999999999999999999999999765 4565655544433
|
This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.076 Score=53.07 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=32.7
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeec
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~ 595 (656)
+.+.+.-.|+||++..|+..|++++|||.+++.....
T Consensus 96 ~~v~v~G~DrPGIV~~vT~~la~~~iNI~~L~T~~~~ 132 (190)
T PRK11589 96 VWVQVEVADSPHLIERFTALFDSHHMNIAELVSRTQP 132 (190)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCChhheEEeeec
Confidence 5566778999999999999999999999999996543
|
|
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.19 Score=46.03 Aligned_cols=98 Identities=22% Similarity=0.340 Sum_probs=61.1
Q ss_pred CEEEEEe----cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMG----FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIG----lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+++||| -+..|..+.+.++..|++|+..+|.... -.|... .+++|.-...|++++++|. +.+..++.+
T Consensus 1 ksiAVvGaS~~~~~~g~~v~~~l~~~G~~v~~Vnp~~~~----i~G~~~y~sl~e~p~~iDlavv~~~~-~~~~~~v~~- 74 (116)
T PF13380_consen 1 KSIAVVGASDNPGKFGYRVLRNLKAAGYEVYPVNPKGGE----ILGIKCYPSLAEIPEPIDLAVVCVPP-DKVPEIVDE- 74 (116)
T ss_dssp -EEEEET--SSTTSHHHHHHHHHHHTT-EEEEESTTCSE----ETTEE-BSSGGGCSST-SEEEE-S-H-HHHHHHHHH-
T ss_pred CEEEEEcccCCCCChHHHHHHHHHhCCCEEEEECCCceE----ECcEEeeccccCCCCCCCEEEEEcCH-HHHHHHHHH-
Confidence 6899999 7899999999999999999999987521 124443 4788844789999999992 233344422
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..+..+.+++..+ ..++++.+..++..+
T Consensus 75 -~~~~g~~~v~~~~g----~~~~~~~~~a~~~gi 103 (116)
T PF13380_consen 75 -AAALGVKAVWLQPG----AESEELIEAAREAGI 103 (116)
T ss_dssp -HHHHT-SEEEE-TT----S--HHHHHHHHHTT-
T ss_pred -HHHcCCCEEEEEcc----hHHHHHHHHHHHcCC
Confidence 23345677888877 345566666666544
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.081 Score=50.14 Aligned_cols=63 Identities=22% Similarity=0.232 Sum_probs=44.9
Q ss_pred CEEEEEec-ChhHHHHHHHHhc--CCCEEEEECCCCChh--HHHHc-------CC--e-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPAD--KARAV-------GV--E-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~--~G~~Vi~~d~~~~~~--~a~~~-------g~--~-~~~l~ell~~aDvV~l~~P 292 (656)
.+|+|||. |.+|+.+|..|.. ++-++..||...... .+.++ +. . .....+.+++||+|+++.-
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag 78 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAG 78 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEecc
Confidence 37999999 9999999999884 456899999874221 11111 11 1 1256678999999999884
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.22 Score=51.96 Aligned_cols=45 Identities=31% Similarity=0.467 Sum_probs=37.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.||...++.++.+|.+ |++.|+.. ..+.++++|+
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 166 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGA 166 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCC
Confidence 589999999999999999999999986 88887654 3455666665
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.16 Score=53.23 Aligned_cols=30 Identities=30% Similarity=0.583 Sum_probs=25.7
Q ss_pred EEEEEe-cChhHHHHHHHHhc-CCCEEEE-ECC
Q 006212 231 TLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDP 260 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~-~G~~Vi~-~d~ 260 (656)
+|+|+| +|+||+.+++.+.. -++++.+ +|+
T Consensus 3 kV~IiGa~G~MG~~i~~~i~~~~~~elvav~d~ 35 (266)
T TIGR00036 3 KVAVAGAAGRMGRELIKAALAAEGLQLVAAFER 35 (266)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCEEEEEEec
Confidence 799999 79999999999885 5898776 674
|
|
| >PRK05690 molybdopterin biosynthesis protein MoeB; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=0.12 Score=53.48 Aligned_cols=37 Identities=19% Similarity=0.290 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 28 ~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 28 EKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 46899999999999999999999998886 67777754
|
|
| >PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.45 E-value=0.19 Score=56.26 Aligned_cols=66 Identities=20% Similarity=0.198 Sum_probs=48.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHH--cCCeec--C-HHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV--S-FDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~--~g~~~~--~-l~ell~~aDvV~l~~P 292 (656)
+.+|++.|+|.|.+|.++|+.|...|++|.++|..... ....+ .|+.+. . -+..+.++|+|+..--
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~~~~~~l~~~~~gi~~~~g~~~~~~~~~~d~vv~spg 76 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKPERVAQIGKMFDGLVFYTGRLKDALDNGFDILALSPG 76 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCchhHHHHhhccCCcEEEeCCCCHHHHhCCCEEEECCC
Confidence 56899999999999999999999999999999976532 12222 366442 1 2345578999987543
|
|
| >PRK05562 precorrin-2 dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.30 E-value=0.22 Score=51.04 Aligned_cols=91 Identities=9% Similarity=0.077 Sum_probs=61.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHc-CCeec--CH-HHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV-GVELV--SF-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~-g~~~~--~l-~ell~~aDvV~l~~Plt~~T 297 (656)
-.++.|++|.|||-|.++..=++.|..+|.+|.++.|....+. .... .+.+. ++ .+.+..+++|+.|+....
T Consensus 20 ~l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~~~~~i~~~~r~~~~~dl~g~~LViaATdD~~-- 97 (223)
T PRK05562 20 SLLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLKKYGNLKLIKGNYDKEFIKDKHLIVIATDDEK-- 97 (223)
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHHhCCCEEEEeCCCChHHhCCCcEEEECCCCHH--
Confidence 3467799999999999999888888899999999999875432 1122 23322 11 234678899988876322
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|+......+.-.+++|++
T Consensus 98 ---vN~~I~~~a~~~~~lvn~v 116 (223)
T PRK05562 98 ---LNNKIRKHCDRLYKLYIDC 116 (223)
T ss_pred ---HHHHHHHHHHHcCCeEEEc
Confidence 5665555565545666653
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.27 E-value=0.19 Score=53.68 Aligned_cols=63 Identities=19% Similarity=0.355 Sum_probs=47.2
Q ss_pred CEEEEEecChhHH-HHHHHHhcCC--CEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGS-EVARRAKGLG--MNVIA-HDPYAP--ADKARAVGVE--LVSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~-~vA~~lk~~G--~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDvV~l~~P 292 (656)
.++||||+|.|++ ..+..++..+ +++.+ +|++.. ...+.+.|+. +.++++++++ .|+|++|+|
T Consensus 4 irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp 76 (342)
T COG0673 4 IRVGIIGAGGIAGKAHLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATP 76 (342)
T ss_pred eEEEEEcccHHHHHHhHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 4799999997775 4777787765 45544 688763 3456677874 4589999986 599999999
|
|
| >PRK13376 pyrB bifunctional aspartate carbamoyltransferase catalytic subunit/aspartate carbamoyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=93.25 E-value=1.3 Score=50.79 Aligned_cols=96 Identities=20% Similarity=0.242 Sum_probs=62.6
Q ss_pred ccccCCCEEEEEec---ChhHHHHHHHHhcCC-CEEEEECCCC---Ch---hHHHHcCCe--e-cCHHHHhccCCEE--E
Q 006212 224 GVSLVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA---PA---DKARAVGVE--L-VSFDQALATADFI--S 288 (656)
Q Consensus 224 g~~l~gktvGIIGl---G~IG~~vA~~lk~~G-~~Vi~~d~~~---~~---~~a~~~g~~--~-~~l~ell~~aDvV--~ 288 (656)
|..+.|++|++||= +++..+++..+..|| |+|....|.. +. +.+++.|.. . .++++.+++||+. .
T Consensus 169 G~~l~glkVa~vGD~~~~rva~Sl~~~l~~~g~~~v~l~~P~~~~~p~~~~~~a~~~G~~v~i~~d~~eav~~AD~tdvw 248 (525)
T PRK13376 169 NFDNSFIHIALVGDLLHGRTVHSKVNGLKIFKNVKVDLIAPEELAMPEHYVEKMKKNGFEVRIFSSIEEYLSQKDVAKIW 248 (525)
T ss_pred CCCcCCCEEEEECCCCCCcHHHHHHHHHHhcCCcEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhccCCccceE
Confidence 33578999999998 589999999999998 9999887743 22 233344643 2 4899999999952 2
Q ss_pred EccCCCcc--------------ccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPT--------------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~--------------T~~li~~~~l~~mK~gailINva 319 (656)
..+....+ -...++++.++.+|+++++.-|.
T Consensus 249 ~~~RiQ~Ermg~~~~~~~~~~~~~y~vt~elm~~ak~~ai~MHcL 293 (525)
T PRK13376 249 YFTRLQLERMGEDILEKEHILRKAVTFRKEFLDKLPEGVKFYHPL 293 (525)
T ss_pred EEeccccccCCCccchhHHHHhcCcEECHHHHhccCCCCEEECCC
Confidence 21111111 12234566666666666666664
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.21 Score=55.97 Aligned_cols=106 Identities=22% Similarity=0.188 Sum_probs=64.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHH--cCCeec---CHHHHhccCCEEEEccCCCccccc-
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---DKARA--VGVELV---SFDQALATADFISLHMPLNPTTSK- 299 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~--~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~- 299 (656)
.-+++|+|+|.+|.++|+.|+..|++|.++|..... +...+ .|+... .-.+.+.++|+|+.. |.-+.+..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~s-p~i~~~~p~ 84 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIIS-PGLALDTPA 84 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEEC-CCCCCCCHH
Confidence 458999999999999999999999999999975421 22222 366542 123456789988664 33332221
Q ss_pred ----------cccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 300 ----------IFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 300 ----------li~~~-~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++.+. .+.. ++...+-|--+.|+--...-+...|+.
T Consensus 85 ~~~a~~~~i~i~~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 132 (448)
T PRK03803 85 LRAAAAMGIEVIGDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKA 132 (448)
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 23332 2222 333233333346777666656666654
|
|
| >COG3288 PntA NAD/NADP transhydrogenase alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=93.19 E-value=0.14 Score=54.41 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=68.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee---------------cC----------H
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL---------------VS----------F 277 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~---------------~~----------l 277 (656)
+-...+.++-++|+|-+|-..+-..+..|+-|..+|-.. ..+.-++.|.++ .+ +
T Consensus 159 agtv~pA~vlv~G~Gvagl~aiata~~lG~iVt~rdlrm~~Keqv~s~Ga~f~~~~~ee~~gGYAk~ms~~~~~~q~~~~ 238 (356)
T COG3288 159 AGTVSPAKVLVIGAGVAGLAAIATAVRLGAIVTARDLRMFKKEQVESLGAKFLAVEDEESAGGYAKEMSEEFIAKQAELV 238 (356)
T ss_pred cccccchhhhhhhHHHHHHHHHHHHhhcceEEehhhhhhHHhhhhhhcccccccccccccCCCccccCCHHHHHHHHHHH
Confidence 345677788999999999999998899999999998554 222222233211 11 3
Q ss_pred HHHhccCCEEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~--~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.+.+++.|+|+.. +|..| --.++.++..+.||||.+|||.+
T Consensus 239 a~~~~~~DivITTAlIPGrp-AP~Lvt~~mv~sMkpGSViVDlA 281 (356)
T COG3288 239 AEQAKEVDIVITTALIPGRP-APKLVTAEMVASMKPGSVIVDLA 281 (356)
T ss_pred HHHhcCCCEEEEecccCCCC-CchhhHHHHHHhcCCCcEEEEeh
Confidence 4568899999874 35444 34578899999999999999986
|
|
| >KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=93.17 E-value=0.36 Score=51.50 Aligned_cols=46 Identities=39% Similarity=0.538 Sum_probs=40.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.|++|+|+|.+|.++++-+|++|. +|++.|-+. ..+.+++.|+.
T Consensus 192 ~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT 239 (375)
T KOG0022|consen 192 PGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT 239 (375)
T ss_pred CCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc
Confidence 58999999999999999999999985 899999886 45778888873
|
|
| >PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.2 Score=56.80 Aligned_cols=64 Identities=22% Similarity=0.180 Sum_probs=46.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--Chh---HHHHcCCeec---CHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PAD---KARAVGVELV---SFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~---~a~~~g~~~~---~l~ell~~aDvV~l~~ 291 (656)
+.||+++|+|+|.-|.+.|+.|+..|.+|+++|... ... ...+ +.... ...+.+.++|+|+..-
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~d~vV~Sp 77 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQALTLFCNAVEAREVGALAD-AALLVETEASAQRLAAFDVVVKSP 77 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCcccchHHHHHhh-cCEEEeCCCChHHccCCCEEEECC
Confidence 468999999999999999999999999999999643 111 1222 33221 1235668899987754
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.15 E-value=0.26 Score=52.86 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=55.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHH-HhccCCEEEEccCCCccccccccHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ-ALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~e-ll~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.|.+|.|.|.|.+|...++.++.+|.+|++.++.. ..+.++++|+..+ +..+ .-...|+++.+.... . . -..
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~vi~~~~~~~~~~d~~i~~~~~~-~---~-~~~ 239 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAASAGGAYDTPPEPLDAAILFAPAG-G---L-VPP 239 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCceeccccccCcccceEEEECCCcH-H---H-HHH
Confidence 48899999999999999999999999999988765 4567788887432 2111 112245555444321 1 1 123
Q ss_pred HHhcCCCCcEEEEcC
Q 006212 305 TFAKMKKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~mK~gailINva 319 (656)
.++.++++..++.++
T Consensus 240 ~~~~l~~~G~~v~~G 254 (329)
T TIGR02822 240 ALEALDRGGVLAVAG 254 (329)
T ss_pred HHHhhCCCcEEEEEe
Confidence 444556666655554
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PLN02602 lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.10 E-value=0.48 Score=51.83 Aligned_cols=89 Identities=15% Similarity=0.203 Sum_probs=55.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhH--HHHc-------C-Ceec---CHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------G-VELV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~--a~~~-------g-~~~~---~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.+|..+|..+...| -++..+|....... +.++ + .... +. +.+++||+|+++.-..
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi~~~~~~g~a~DL~~~~~~~~~~~i~~~~dy-~~~~daDiVVitAG~~ 116 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDVNPDKLRGEMLDLQHAAAFLPRTKILASTDY-AVTAGSDLCIVTAGAR 116 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCCchhhHHHHHHHhhhhcCCCCEEEeCCCH-HHhCCCCEEEECCCCC
Confidence 69999999999999999988555 47999997653211 1111 1 1221 33 3489999999986432
Q ss_pred c---cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 295 P---TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~---~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
. +++. ++ |. ..+....|.+++++++
T Consensus 117 ~k~g~tR~dll~~N~~I~~~i~~~I~~~~p~~ivivvt 154 (350)
T PLN02602 117 QIPGESRLNLLQRNVALFRKIIPELAKYSPDTILLIVS 154 (350)
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 1 2331 11 11 1223356778888887
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.22 Score=47.01 Aligned_cols=64 Identities=25% Similarity=0.341 Sum_probs=49.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--C----HHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--S----FDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--~----l~ell~~aDvV~l~~P 292 (656)
+++++..||+| -|..+|..|...|.+|++.|.+. ..+.+++.++..+ | --++.+.+|+|.-+=|
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirp 86 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRP 86 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCC
Confidence 56889999999 99999999999999999999876 3445566665432 2 2356778888877766
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.07 E-value=0.29 Score=60.32 Aligned_cols=66 Identities=15% Similarity=0.303 Sum_probs=46.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcC-CCE-------------EEEECCCCCh-h-HHHHc-CC---ee--cCHHHH---hc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGL-GMN-------------VIAHDPYAPA-D-KARAV-GV---EL--VSFDQA---LA 282 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~-G~~-------------Vi~~d~~~~~-~-~a~~~-g~---~~--~~l~el---l~ 282 (656)
+.|+|+|||.|.||+.+|+.|... +.+ |.+.|++... + .+... ++ .. .+.+++ ++
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~ 647 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVS 647 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhc
Confidence 477999999999999999999754 344 8888988632 2 22222 42 22 244554 46
Q ss_pred cCCEEEEccCC
Q 006212 283 TADFISLHMPL 293 (656)
Q Consensus 283 ~aDvV~l~~Pl 293 (656)
++|+|+.|+|.
T Consensus 648 ~~DaVIsalP~ 658 (1042)
T PLN02819 648 QVDVVISLLPA 658 (1042)
T ss_pred CCCEEEECCCc
Confidence 89999999994
|
|
| >TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p | Back alignment and domain information |
|---|
Probab=93.04 E-value=0.2 Score=58.31 Aligned_cols=127 Identities=15% Similarity=0.196 Sum_probs=81.6
Q ss_pred CceeecCC-CCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecChhHHHHHHHHhcCCC
Q 006212 176 GCLVVNAP-IANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGM 253 (656)
Q Consensus 176 GI~V~n~p-~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G~ 253 (656)
|-+++|-. -.+....||.++-|=|-++| |.--...+ ..|.+.+|.|||.|-+|..+|+.|.+.|.
T Consensus 296 ~pr~~dL~~~mdP~~la~~avdlnlkLmk-------------WRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GV 362 (664)
T TIGR01381 296 QPISVDLSKEFDPKRLAERSVDLNLKLMK-------------WRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGV 362 (664)
T ss_pred CceEechhhhcCHHHHHHHHHHHHHHHHh-------------hhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCC
Confidence 33444443 35667778888777766665 75432222 46889999999999999999999999987
Q ss_pred -EEEEECCCC------------Chh-----------HH----HHc--CCe------e-------c-------------CH
Q 006212 254 -NVIAHDPYA------------PAD-----------KA----RAV--GVE------L-------V-------------SF 277 (656)
Q Consensus 254 -~Vi~~d~~~------------~~~-----------~a----~~~--g~~------~-------~-------------~l 277 (656)
++..+|... ..+ .| ++. +++ . + .+
T Consensus 363 g~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~~Lk~InP~v~i~~~~~~Ipm~Gh~i~~~~~~~~~~d~~~l 442 (664)
T TIGR01381 363 RHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQKALKRIFPSIQATGHRLTVPMPGHPIDEKDVPELEKDIARL 442 (664)
T ss_pred CeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHHHHHHHCCCcEEEEeeeeeccccccCCchhhhhccccHHHH
Confidence 566665310 000 00 111 111 0 1 24
Q ss_pred HHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 278 ~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+++++++|+|+.|+- +-++|.+++..-.. .+..+|+.+
T Consensus 443 ~~Li~~~DvV~d~tD-n~esR~L~n~~c~~---~~kplI~aA 480 (664)
T TIGR01381 443 EQLIKDHDVVFLLLD-SREARWLPTVLCSR---HKKIAISAA 480 (664)
T ss_pred HHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCCEEEEE
Confidence 578999999999987 66788888765553 345666665
|
This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy. |
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.18 Score=54.89 Aligned_cols=37 Identities=24% Similarity=0.300 Sum_probs=33.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|..++|.|||.|.+|..+|+.|...|. ++..+|..
T Consensus 20 ~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 20 QKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 46899999999999999999999998898 88888865
|
|
| >PRK08762 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=92.92 E-value=0.27 Score=54.10 Aligned_cols=75 Identities=15% Similarity=0.127 Sum_probs=50.1
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHh
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAK 249 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk 249 (656)
.+..+.|-.+...+......... -.|++ .-+.|... .-..|.+++|.|+|+|.+|..+|+.|.
T Consensus 93 ~~W~~~g~p~~~~~~~s~~~~~~--------y~r~i-------~l~~~g~~--~q~~l~~~~VlvvG~GG~Gs~ia~~La 155 (376)
T PRK08762 93 SAWKDAGLPLERPRLLTDEQDER--------YSRHL-------RLPEVGEE--GQRRLLEARVLLIGAGGLGSPAALYLA 155 (376)
T ss_pred HHHHhcCCccccccCCCHHHHHH--------HHHhc-------chhhcCHH--HHHHHhcCcEEEECCCHHHHHHHHHHH
Confidence 44556677777666655444322 22332 22234321 124689999999999999999999999
Q ss_pred cCCC-EEEEECCC
Q 006212 250 GLGM-NVIAHDPY 261 (656)
Q Consensus 250 ~~G~-~Vi~~d~~ 261 (656)
..|. ++..+|+.
T Consensus 156 ~~Gvg~i~lvD~d 168 (376)
T PRK08762 156 AAGVGTLGIVDHD 168 (376)
T ss_pred HcCCCeEEEEeCC
Confidence 9887 68888875
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.35 Score=54.07 Aligned_cols=67 Identities=15% Similarity=0.125 Sum_probs=47.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--CCeec-----CHH----HHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--GVELV-----SFD----QALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--g~~~~-----~l~----ell~~aDvV~l~~Pl 293 (656)
+..+++.|+|+|.+|+.+++.|...|.+|+++|.... .+...+. ++..+ +.+ ..+.++|.|+++++.
T Consensus 229 ~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~ 307 (453)
T PRK09496 229 KPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTND 307 (453)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCC
Confidence 4578999999999999999999999999999987753 2223222 33221 222 235788888887774
|
|
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=0.22 Score=58.44 Aligned_cols=88 Identities=18% Similarity=0.277 Sum_probs=60.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHH----HHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFD----QALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~----ell~~aDvV~l~~Plt~~T~ 298 (656)
...+-|+|+|++|+.+|+.|++.|.++++.|.+. ..+.+++.|.... +.+ .-+.+||.++++++..+.+.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~ 479 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSL 479 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHH
Confidence 4679999999999999999999999999998876 3455666676432 232 23679999999998554433
Q ss_pred ccccHHHHhcCCCCcEEEEc
Q 006212 299 KIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINv 318 (656)
.+. ...+.+.|+..++--
T Consensus 480 ~i~--~~ar~~~p~~~iiaR 497 (621)
T PRK03562 480 QLV--ELVKEHFPHLQIIAR 497 (621)
T ss_pred HHH--HHHHHhCCCCeEEEE
Confidence 332 233344556555443
|
|
| >PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.77 E-value=0.5 Score=52.84 Aligned_cols=108 Identities=18% Similarity=0.172 Sum_probs=64.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcCCeec---CHHHHhccCCEEEEccCCCcccccc-
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVGVELV---SFDQALATADFISLHMPLNPTTSKI- 300 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~l- 300 (656)
+.+|++.|+|+|..|.+.++.|+..|.+|.++|...... ...+.|+... .-.+.++..|+| ++.|..+.....
T Consensus 4 ~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~d~v-v~spgi~~~~~~~ 82 (438)
T PRK03806 4 YQGKKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRITPPGLDKLPENVERHTGSLNDEWLLAADLI-VASPGIALAHPSL 82 (438)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCCCchhHHHHhcCCEEEeCCCCHHHhcCCCEE-EECCCCCCCCHHH
Confidence 568899999999999999999999999999999654221 1123366542 123456778866 455544433222
Q ss_pred ----------ccH-HHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhc
Q 006212 301 ----------FND-ETFAKMKKGVRI-VNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 301 ----------i~~-~~l~~mK~gail-INvaRg~ivde~aL~~aL~~ 335 (656)
+.+ +.+..+-+..+| |--+.|+--...-+...|+.
T Consensus 83 ~~a~~~g~~v~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 129 (438)
T PRK03806 83 SAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 129 (438)
T ss_pred HHHHHCCCeEEEHHHHHhhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 222 223222222233 33335777656666666654
|
|
| >PLN02948 phosphoribosylaminoimidazole carboxylase | Back alignment and domain information |
|---|
Probab=92.75 E-value=0.31 Score=56.72 Aligned_cols=69 Identities=17% Similarity=0.305 Sum_probs=49.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-h-hHHHHcCC--eecC---HHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-A-DKARAVGV--ELVS---FDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-~~a~~~g~--~~~~---l~ell~~aDvV~l~~Plt 294 (656)
....|+|||||-|..|+.+++.++.+|++|+++|+... . ....+.-+ .+.+ +.++++++|+|+.+....
T Consensus 19 ~~~~k~IgIIGgGqlg~mla~aA~~lG~~Vi~ld~~~~apa~~~AD~~~v~~~~D~~~l~~~a~~~dvIt~e~e~v 94 (577)
T PLN02948 19 GVSETVVGVLGGGQLGRMLCQAASQMGIKVKVLDPLEDCPASSVAARHVVGSFDDRAAVREFAKRCDVLTVEIEHV 94 (577)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCceeeeCCCCCHHHHHHHHHHCCEEEEecCCC
Confidence 37789999999999999999999999999999998652 1 11111111 1223 556678899998765533
|
|
| >PRK12861 malic enzyme; Reviewed | Back alignment and domain information |
|---|
Probab=92.70 E-value=5 Score=48.21 Aligned_cols=119 Identities=16% Similarity=0.137 Sum_probs=89.5
Q ss_pred CceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC--
Q 006212 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (656)
Q Consensus 176 GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-- 253 (656)
.|.|.|+-- .-+|=-+++-+++.+| ..|..+...+|.|.|.|.-|-.+|+.+...|.
T Consensus 157 ~ipvf~DD~---qGTa~v~lA~llnal~------------------~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~ 215 (764)
T PRK12861 157 KIPVFHDDQ---HGTAITVSAAFINGLK------------------VVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPV 215 (764)
T ss_pred CCCeecccc---chHHHHHHHHHHHHHH------------------HhCCChhHcEEEEECHhHHHHHHHHHHHHcCCCh
Confidence 799999833 3344456777777776 34678889999999999999999999998898
Q ss_pred -EEEEECCCC----------Ch---hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 254 -NVIAHDPYA----------PA---DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 254 -~Vi~~d~~~----------~~---~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+++.+|..- .. ..++.. ...+|.|+++.+|+++= +. +-+.++++.++.|.+.++|.=.+
T Consensus 216 ~~i~~~D~~Gli~~~r~~~l~~~k~~~a~~~--~~~~L~eai~~advliG-~S----~~g~ft~e~v~~Ma~~PIIFaLs 288 (764)
T PRK12861 216 ENIWVTDIEGVVYRGRTTLMDPDKERFAQET--DARTLAEVIGGADVFLG-LS----AGGVLKAEMLKAMAARPLILALA 288 (764)
T ss_pred hhEEEEcCCCeeeCCCcccCCHHHHHHHhhc--CCCCHHHHHhcCCEEEE-cC----CCCCCCHHHHHHhccCCEEEECC
Confidence 788888431 11 112221 33489999999998754 33 25789999999999999999998
Q ss_pred CCc
Q 006212 320 RGG 322 (656)
Q Consensus 320 Rg~ 322 (656)
.-.
T Consensus 289 NPt 291 (764)
T PRK12861 289 NPT 291 (764)
T ss_pred CCC
Confidence 644
|
|
| >COG0440 IlvH Acetolactate synthase, small (regulatory) subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.38 Score=46.68 Aligned_cols=74 Identities=16% Similarity=0.257 Sum_probs=55.5
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEEEEE
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v~~v 630 (656)
..++|.+...|+||++..+..+++..|+||..+.++..+..+.+-|.+-+.. ..-+++.++|.++-+|..|.-+
T Consensus 3 m~rilsvlv~ne~GvLsRv~glfsrRG~NIeSltv~~tE~~~~SRiTivv~g~~~~~EQi~kQL~kLidV~kV~d~ 78 (163)
T COG0440 3 MRRILSLLVENEPGVLSRVTGLFSRRGYNIESLTVGPTETPGLSRITIVVSGDEQVLEQIIKQLNKLIDVLKVLDL 78 (163)
T ss_pred ceEEEEEEEECCCCeeehhhHHHHhcCcccceEEEEecCCCCceEEEEEEcCCcchHHHHHHHHHhhccceeEEEc
Confidence 3567777888999999999999999999999999998776666666555555 3345666666666555555443
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.62 Score=49.42 Aligned_cols=69 Identities=22% Similarity=0.243 Sum_probs=48.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHc----CC---eecC---HHHHhccCCEEEEccC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV----GV---ELVS---FDQALATADFISLHMP 292 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~----g~---~~~~---l~ell~~aDvV~l~~P 292 (656)
.+.||++.|+|.|-.|++++-.|...|+ +|.++|+.... ..+... +. ...+ +++.+..+|+|+.++|
T Consensus 124 ~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp 203 (283)
T PRK14027 124 NAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATP 203 (283)
T ss_pred CcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCC
Confidence 4568999999999999999999998887 78899987422 122211 11 1122 2345678899999988
Q ss_pred CC
Q 006212 293 LN 294 (656)
Q Consensus 293 lt 294 (656)
..
T Consensus 204 ~G 205 (283)
T PRK14027 204 MG 205 (283)
T ss_pred CC
Confidence 44
|
|
| >PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.18 Score=47.68 Aligned_cols=80 Identities=31% Similarity=0.449 Sum_probs=48.6
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKK 311 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ 311 (656)
+-|+|-|.+++++++.++.+|++|.++|++.. .++.++-+ .+.+... + .+.+ .+.+
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~e----------------~~~~~~~~-~~~~~~~----~--~~~~-~~~~ 56 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRPE----------------RFPEADEV-ICIPPDD----I--LEDL-EIDP 56 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-CC----------------C-TTSSEE-ECSHHHH----H--HHHC--S-T
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCcc----------------ccCCCCcc-EecChHH----H--Hhcc-CCCC
Confidence 46899999999999999999999999998742 11234442 2332110 0 0111 3566
Q ss_pred CcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 312 GVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 312 gailINvaRg~ivde~aL~~aL~~g 336 (656)
++.+| +.++.-.|.+.|..+|+..
T Consensus 57 ~t~Vv-~th~h~~D~~~L~~~l~~~ 80 (136)
T PF13478_consen 57 NTAVV-MTHDHELDAEALEAALASP 80 (136)
T ss_dssp T-EEE---S-CCCHHHHHHHHTTSS
T ss_pred CeEEE-EcCCchhHHHHHHHHHcCC
Confidence 66666 7788888888888888773
|
|
| >PRK10872 relA (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.29 Score=58.31 Aligned_cols=70 Identities=16% Similarity=0.247 Sum_probs=54.5
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~~ 629 (656)
.|.+...|++|+++.|++++++.++||.++++....+++.+.+. +++.+...- .++.+|+++++|.+|+-
T Consensus 668 ~I~I~~~Dr~GlL~dIt~~is~~~~nI~~v~~~~~~~~~~~~~~~~ieV~~~~~L~~l~~~L~~i~~V~~v~R 740 (743)
T PRK10872 668 VVRVTANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARR 740 (743)
T ss_pred EEEEEEcCCCCHHHHHHHHHHHCCCCeEEEEeEEcCCCCEEEEEEEEEECCHHHHHHHHHHHhcCCCcCeEEe
Confidence 45567899999999999999999999999998544435666555 444443322 89999999999999864
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.28 Score=52.66 Aligned_cols=140 Identities=15% Similarity=0.184 Sum_probs=80.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-------------CHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-------------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-------------~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|.|+|.|.||+-++.+|...|..|+..-+....+..++.|.... .-.+.+..+|+|++++- +-+
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vK-a~q 79 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRRLEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVK-AYQ 79 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHHHHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEec-ccc
Confidence 4799999999999999999998977777665544455555564321 12345678999999875 333
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCc
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T 373 (656)
+...+ ......+++.+.|+=.--| +=.++.+....... .+.|...-....+.+ ..-.......+.+.+.-+...
T Consensus 80 ~~~al-~~l~~~~~~~t~vl~lqNG-~g~~e~l~~~~~~~~il~G~~~~~a~~~~~-g~v~~~g~g~~~ig~~~~~~~ 154 (307)
T COG1893 80 LEEAL-PSLAPLLGPNTVVLFLQNG-LGHEEELRKILPKETVLGGVTTHGAVREGP-GHVVHTGLGDTVIGELRGGRD 154 (307)
T ss_pred HHHHH-HHhhhcCCCCcEEEEEeCC-CcHHHHHHHhCCcceEEEEEeeeeeEecCC-ceEEEecCCcEEEccCCCCch
Confidence 44333 3344457777666633222 22344555555544 343322221122211 112233345677777666553
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.94 Score=47.11 Aligned_cols=83 Identities=22% Similarity=0.304 Sum_probs=67.0
Q ss_pred HHHHHHHHhcCCCEEEEECCCCC------hhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAP------ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~------~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
|..+|-.+...|..|+..||+.. .++..+.|++.+ +=.+.++.+.+.+|.+|....|-++. ++.+..++.|+
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Ia-rei~~hvpEgA 111 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIA-REILEHVPEGA 111 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHH-HHHHhhCcCCc
Confidence 67788888888999999999752 234567799887 44578899999999999887777664 67888999999
Q ss_pred EEEEcCCCchh
Q 006212 314 RIVNVARGGVI 324 (656)
Q Consensus 314 ilINvaRg~iv 324 (656)
+|.|+..-..+
T Consensus 112 VicnTCT~sp~ 122 (340)
T COG4007 112 VICNTCTVSPV 122 (340)
T ss_pred EecccccCchh
Confidence 99999875544
|
|
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=92.31 E-value=0.46 Score=51.80 Aligned_cols=63 Identities=11% Similarity=0.123 Sum_probs=49.6
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEE-ECCCC--ChhHHHHcCCe-ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYA--PADKARAVGVE-LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~-~d~~~--~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Pl 293 (656)
.+|||||. .+|+..++.++.. +.++.+ +|+.. ..+.+++.|+. +.++++++.+.|++++++|.
T Consensus 4 ~rVgViG~-~~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt 72 (343)
T TIGR01761 4 QSVVVCGT-RFGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRS 72 (343)
T ss_pred cEEEEEeH-HHHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCC
Confidence 58999999 6899999888865 578776 68765 23456667875 45899999999999999984
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF02629 CoA_binding: CoA binding domain; InterPro: IPR003781 This domain has a Rossmann fold and is found in a number of proteins including succinyl CoA synthetases, malate and ATP-citrate ligases | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.098 Score=46.12 Aligned_cols=61 Identities=18% Similarity=0.348 Sum_probs=40.8
Q ss_pred CEEEEEecChhHHHHHHHHh-cCCCEEE-EE--CCCCChhHHHHcCCeec-CHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GLGMNVI-AH--DPYAPADKARAVGVELV-SFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~G~~Vi-~~--d~~~~~~~a~~~g~~~~-~l~ell~~--aDvV~l~~P 292 (656)
.++.|+|.|+.|++++.... ..|+++. ++ ||...-+ .-.|+... +++++.+. .|+-++++|
T Consensus 4 ~~v~ivGag~~G~a~~~~~~~~~g~~i~~~~dv~~~~~G~--~i~gipV~~~~~~l~~~~~i~iaii~VP 71 (96)
T PF02629_consen 4 TNVIIVGAGNLGRALLYNGFSMRGFGIVAVFDVDPEKIGK--EIGGIPVYGSMDELEEFIEIDIAIITVP 71 (96)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHHCECEEEEEEECTTTTTS--EETTEEEESSHHHHHHHCTTSEEEEES-
T ss_pred CeEEEECCCCcHHHHHHhHHHHcCCCCEEEEEcCCCccCc--EECCEEeeccHHHhhhhhCCCEEEEEcC
Confidence 47999999999999986554 4465533 34 4442111 11256666 78887776 999999999
|
; GO: 0005488 binding; PDB: 3IL2_B 3IKT_A 3IKV_B 2SCU_D 1JKJ_D 2NU7_A 1CQI_A 1JLL_A 2NU8_D 1SCU_D .... |
| >cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively | Back alignment and domain information |
|---|
Probab=92.24 E-value=0.23 Score=53.07 Aligned_cols=85 Identities=19% Similarity=0.297 Sum_probs=56.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCCC------------ChhH--------------HHHc--CCee--c----
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA------------PADK--------------ARAV--GVEL--V---- 275 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~------------~~~~--------------a~~~--g~~~--~---- 275 (656)
+|.|+|.|-+|..+|+.|...|. ++..+|... ..+. .++. +++. .
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 58999999999999999998886 566666321 0000 0111 1111 0
Q ss_pred --------------------CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 276 --------------------SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 276 --------------------~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.++++++++|+|+.++- +-+++.+++..-.. .+..+||.+
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~~li~~~DvV~d~tD-n~esR~L~~~~~~~---~~k~~I~aa 140 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLEELIKDHDVIFLLTD-SRESRWLPTLLSAA---KNKLVINAA 140 (307)
T ss_pred cccccccccccccccccCHHHHHHHHhhCCEEEECCC-CHHHHHHHHHHHHH---hCCcEEEEE
Confidence 14688999999999995 66788887765544 233677765
|
This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole. |
| >TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.43 Score=51.61 Aligned_cols=30 Identities=33% Similarity=0.634 Sum_probs=24.6
Q ss_pred EEEEEecChhHHHHHHHHhcC----CCEEEEECC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL----GMNVIAHDP 260 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~----G~~Vi~~d~ 260 (656)
+|||+|+|+||+.+.+.+... +++|...+.
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd 34 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNE 34 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEec
Confidence 489999999999999998754 378887654
|
Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species. |
| >PLN02586 probable cinnamyl alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.63 Score=50.60 Aligned_cols=45 Identities=24% Similarity=0.457 Sum_probs=35.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga 229 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA 229 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC
Confidence 588999999999999999999999999988765542 233445665
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=92.03 E-value=1.3 Score=44.76 Aligned_cols=88 Identities=26% Similarity=0.321 Sum_probs=55.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-c-----CHHHH-----hccCCEEEEccCCCc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-V-----SFDQA-----LATADFISLHMPLNP 295 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~-----~l~el-----l~~aDvV~l~~Plt~ 295 (656)
.|+++.|.|.|.+|+.+++.++..|.+|++.++.. ..+.+...|... . +..+. -...|+++.+++...
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~~~~~~ 213 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGADHVIDYKEEDLEEELRLTGGGGADVVIDAVGGPE 213 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCceeccCCcCCHHHHHHHhcCCCCCEEEECCCCHH
Confidence 57899999999999999999999999999998764 233344444321 1 11111 134667666655211
Q ss_pred cccccccHHHHhcCCCCcEEEEcCC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..+++++.
T Consensus 214 -----~~~~~~~~l~~~G~~v~~~~ 233 (271)
T cd05188 214 -----TLAQALRLLRPGGRIVVVGG 233 (271)
T ss_pred -----HHHHHHHhcccCCEEEEEcc
Confidence 12334455666666666654
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.45 Score=51.04 Aligned_cols=63 Identities=19% Similarity=0.282 Sum_probs=43.5
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCC--EEEEECCCCChhHH--H---------HcC--Cee--c-CHHHHhccCCEEEEc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYAPADKA--R---------AVG--VEL--V-SFDQALATADFISLH 290 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a--~---------~~g--~~~--~-~l~ell~~aDvV~l~ 290 (656)
++|+|+|. |.+|..+|..+...|. +|+.+|+....+.+ . ..+ ... . +. +.+++||+|+++
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViit 79 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIIT 79 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEe
Confidence 47999998 9999999999987765 59999974311111 0 111 112 1 44 459999999999
Q ss_pred cCC
Q 006212 291 MPL 293 (656)
Q Consensus 291 ~Pl 293 (656)
...
T Consensus 80 ag~ 82 (309)
T cd05294 80 AGV 82 (309)
T ss_pred cCC
Confidence 863
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=92.02 E-value=0.47 Score=51.10 Aligned_cols=45 Identities=29% Similarity=0.454 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|.|.|.+|...++.++..|.+|++.+... ..+.+++.|+
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga 211 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGA 211 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 48899999999999999999999999999988764 3344555554
|
Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. |
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.44 Score=51.11 Aligned_cols=75 Identities=17% Similarity=0.291 Sum_probs=52.3
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
+|+|+| -|-.|.++.++|... .+++........ ....+.+++++++|++++|+|.. ... +....
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~~el~~l~s~~~--------~~~~~~~~~~~~~D~vFlalp~~-~s~-----~~~~~ 68 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDDIELLSIAPDRR--------KDAAERAKLLNAADVAILCLPDD-AAR-----EAVSL 68 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCCeEEEEEecccc--------cCcCCHhHhhcCCCEEEECCCHH-HHH-----HHHHH
Confidence 689997 489999999999977 567766532211 12235677888999999999943 222 22222
Q ss_pred -CCCCcEEEEcC
Q 006212 309 -MKKGVRIVNVA 319 (656)
Q Consensus 309 -mK~gailINva 319 (656)
.+.|+.+||.+
T Consensus 69 ~~~~g~~VIDlS 80 (310)
T TIGR01851 69 VDNPNTCIIDAS 80 (310)
T ss_pred HHhCCCEEEECC
Confidence 35789999987
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >TIGR01161 purK phosphoribosylaminoimidazole carboxylase, PurK protein | Back alignment and domain information |
|---|
Probab=91.93 E-value=0.35 Score=52.52 Aligned_cols=60 Identities=27% Similarity=0.394 Sum_probs=43.5
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC--eecC---HHHHhccCCEEEEc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV--ELVS---FDQALATADFISLH 290 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~--~~~~---l~ell~~aDvV~l~ 290 (656)
||||||-|..|+.+++.++.+|++|+++|++.. .....+.-+ .+.+ +.++++.||+|+..
T Consensus 1 ~igiiG~gql~~~l~~aa~~lG~~v~~~d~~~~~p~~~~ad~~~~~~~~d~~~i~~~a~~~dvit~e 67 (352)
T TIGR01161 1 TVGILGGGQLGRMLALAARPLGIKVHVLDPDANSPAVQVADHVVLAPFFDPAAIRELAESCDVITFE 67 (352)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCEEEEECCCCCCChhHhCceeEeCCCCCHHHHHHHHhhCCEEEeC
Confidence 599999999999999999999999999998752 111111111 1224 66788899998553
|
Phosphoribosylaminoimidazole carboxylase is a fusion protein in plants and fungi, but consists of two non-interacting proteins in bacteria, PurK and PurE. This model represents PurK, N5-carboxyaminoimidazole ribonucleotide synthetase, which hydrolyzes ATP and converts AIR to N5-CAIR. PurE converts N5-CAIR to CAIR. In the presence of high concentrations of bicarbonate, PurE is reported able to convert AIR to CAIR directly and without ATP. |
| >TIGR02355 moeB molybdopterin synthase sulfurylase MoeB | Back alignment and domain information |
|---|
Probab=91.92 E-value=0.23 Score=51.34 Aligned_cols=37 Identities=19% Similarity=0.331 Sum_probs=32.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|+|+|-+|..+|+.|...|. ++..+|+.
T Consensus 20 ~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 20 EALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 35889999999999999999999998885 67777764
|
This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899). |
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=91.91 E-value=0.29 Score=47.21 Aligned_cols=63 Identities=29% Similarity=0.332 Sum_probs=46.9
Q ss_pred EEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--------CHHHHhccCCEEEEccCCCc
Q 006212 232 LAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 232 vGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--------~l~ell~~aDvV~l~~Plt~ 295 (656)
|.|+| .|.+|+.+++.|...|.+|.+.-++...... ..+++.+ ++.+.++.+|.|+.+++...
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~-~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~~~ 72 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPSKAED-SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGPPP 72 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH-CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHSTT
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCchhccc-ccccccceeeehhhhhhhhhhhhcchhhhhhhhhc
Confidence 57888 5999999999999999999999877532111 3444322 35667889999999997543
|
... |
| >PRK14805 ornithine carbamoyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.6 Score=44.17 Aligned_cols=65 Identities=25% Similarity=0.242 Sum_probs=47.2
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--Chh--------HHHHcCCee---cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--PAD--------KARAVGVEL---VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~~~--------~a~~~g~~~---~~l~ell~~aDvV~l~~ 291 (656)
.+.|++|+++|=+ ++..+++..+..+|++|....|.. +.. .++..|..+ .++ +.++.||+|..-.
T Consensus 144 ~l~g~kva~vGD~~~v~~S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~a~~~~~~~g~~~~~~~d~-~a~~~aDvvy~~~ 222 (302)
T PRK14805 144 DVSKVKLAYVGDGNNVTHSLMYGAAILGATMTVICPPGHFPDGQIVAEAQELAAKSGGKLVLTSDI-EAIEGHDAIYTDT 222 (302)
T ss_pred CcCCcEEEEEcCCCccHHHHHHHHHHcCCEEEEECCchhcCCHHHHHHHHHHHHHcCCEEEEEcCH-HHHCCCCEEEeec
Confidence 4789999999984 567888888889999999988753 211 123346543 355 5699999998833
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.36 Score=52.48 Aligned_cols=63 Identities=16% Similarity=0.216 Sum_probs=42.7
Q ss_pred EEEEEecChhHHH-HHHHHhc--CCCEEEE-ECCCCCh-hHHHHcC-Cee-cCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSE-VARRAKG--LGMNVIA-HDPYAPA-DKARAVG-VEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~-vA~~lk~--~G~~Vi~-~d~~~~~-~~a~~~g-~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
++||||+|.|++. .+..+.. -+++|.+ +|+.... +.+.+.+ +.. .++++++. +.|+|++|+|.
T Consensus 3 rvgiiG~G~~~~~~h~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~ 74 (344)
T PRK10206 3 NCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHA 74 (344)
T ss_pred EEEEECCCHHHhheehhhHhcCCCCEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCc
Confidence 6999999998864 3444432 3678865 7876422 2234444 333 48999996 67999999993
|
|
| >TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=91.72 E-value=0.56 Score=50.49 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=54.9
Q ss_pred EEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--cC---Ceec------CHHHHhccCCEEEEccCCCcc
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--VG---VELV------SFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~g---~~~~------~l~ell~~aDvV~l~~Plt~~ 296 (656)
+|+|||. |.+|..+|-.+...+ -++..+|.......+.+ .+ .... ++.+.+++||+|+++.-.. .
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~a~g~a~DL~~~~~~~~i~~~~~~~~~~~~~~daDivvitaG~~-~ 79 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAGAAGVAADLSHIPTAASVKGFSGEEGLENALKGADVVVIPAGVP-R 79 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCCCcEEEchhhcCCcCceEEEecCCCchHHHcCCCCEEEEeCCCC-C
Confidence 5899999 999999999887544 48999997642111111 11 1111 2467899999999987632 1
Q ss_pred cccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 006212 297 TSKI-----F--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~l-----i--~~-------~~l~~mK~gailINva 319 (656)
..++ + |. +.+..-.|++++++++
T Consensus 80 ~~g~~R~dll~~N~~I~~~i~~~i~~~~p~~iiivvs 116 (312)
T TIGR01772 80 KPGMTRDDLFNVNAGIVKDLVAAVAESCPKAMILVIT 116 (312)
T ss_pred CCCccHHHHHHHhHHHHHHHHHHHHHhCCCeEEEEec
Confidence 1121 1 11 1222346788888886
|
Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases. |
| >COG3830 ACT domain-containing protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=0.12 Score=45.16 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=27.9
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEee
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVG 592 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~ 592 (656)
+-|.-.|+||+++.|++.|+++|+||-+++-.
T Consensus 6 ITV~GkDr~GIva~is~vLAe~~vNIldisQt 37 (90)
T COG3830 6 ITVIGKDRVGIVAAVSRVLAEHGVNILDISQT 37 (90)
T ss_pred EEEEcCCCCchhHHHHHHHHHcCCcEEEHHHH
Confidence 33457999999999999999999999988764
|
|
| >PRK03815 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.43 Score=53.10 Aligned_cols=102 Identities=15% Similarity=0.177 Sum_probs=60.0
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHh--ccCCEEEEccCCCcccc-------ccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQAL--ATADFISLHMPLNPTTS-------KIF 301 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell--~~aDvV~l~~Plt~~T~-------~li 301 (656)
++.|+|+|..|.++|+.|+ .|.+|.++|.........+.|+.+.. ++.+ .++|+|+.. |.-+... .++
T Consensus 2 ~v~v~G~G~sG~a~a~~L~-~G~~V~~~D~~~~~~~~~~~gi~~~~-~~~~~~~~~d~vv~s-p~i~~~~~~~~~a~~i~ 78 (401)
T PRK03815 2 KISLFGYGKTTKALAKFLK-KFGGVDIFDDKFTESHKDEEGNLLLP-SNDFDPNKSDLEIPS-PGIPPSHPLIQKAKNLI 78 (401)
T ss_pred eEEEEeECHHHHHHHHHHh-CCCeEEEEcCCCCccchhhcCCEEec-HHHcCcCCCCEEEEC-CCCCCCCHHHHHHHHHh
Confidence 5899999999999999999 99999999954322212334665533 2334 468987654 3222221 123
Q ss_pred cHHH-HhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 302 NDET-FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 302 ~~~~-l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.+.. +..+.+..+-|--+.|+--..+-+...|+.
T Consensus 79 ~~~e~~~~~~~~~i~ITGT~GKTTTt~ml~~iL~~ 113 (401)
T PRK03815 79 SEYDYFYDVMPFSIWISGTNGKTTTTQMTTHLLED 113 (401)
T ss_pred hHHHHHHHhcCCEEEEECCCcHHHHHHHHHHHHHH
Confidence 3322 222222233333346777666666666664
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=91.58 E-value=0.29 Score=53.80 Aligned_cols=63 Identities=27% Similarity=0.344 Sum_probs=43.0
Q ss_pred EEEEecChhHHHHHHHHhcCC-C-EEEEECCCCCh-hHHHH--c--CCee--c------CHHHHhccCCEEEEccCCC
Q 006212 232 LAVMGFGKVGSEVARRAKGLG-M-NVIAHDPYAPA-DKARA--V--GVEL--V------SFDQALATADFISLHMPLN 294 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G-~-~Vi~~d~~~~~-~~a~~--~--g~~~--~------~l~ell~~aDvV~l~~Plt 294 (656)
|+|+|.|.+|+.+++.|...+ + +|++.|++... +...+ . .++. + +++++++++|+|+.|+|..
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~ 78 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF 78 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc
Confidence 689999999999999998764 5 89999988632 22211 1 2221 1 3678999999999999843
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.56 E-value=0.48 Score=53.58 Aligned_cols=106 Identities=23% Similarity=0.224 Sum_probs=61.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-CCeec--CHHHHhccCCEEEEccCCCcccc-----
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-GVELV--SFDQALATADFISLHMPLNPTTS----- 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-g~~~~--~l~ell~~aDvV~l~~Plt~~T~----- 298 (656)
.||+|+|+|+|.-|.++|+.|+. |.+|+++|.... .....+. ..... ...+.+.++|+|+..- .-+.+.
T Consensus 5 ~~~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vV~SP-gI~~~~p~~~~ 82 (454)
T PRK01368 5 TKQKIGVFGLGKTGISVYEELQN-KYDVIVYDDLKANRDIFEELYSKNAIAALSDSRWQNLDKIVLSP-GIPLTHEIVKI 82 (454)
T ss_pred CCCEEEEEeecHHHHHHHHHHhC-CCEEEEECCCCCchHHHHhhhcCceeccCChhHhhCCCEEEECC-CCCCCCHHHHH
Confidence 48899999999999999999995 999999995432 1111111 11111 1234567899887643 332221
Q ss_pred ------ccccHHHH--hcCCCCcEEEEcC-CCchhcHHHHHHhHhc
Q 006212 299 ------KIFNDETF--AKMKKGVRIVNVA-RGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ------~li~~~~l--~~mK~gailINva-Rg~ivde~aL~~aL~~ 335 (656)
.++++-++ ..+++..+|-=+| .|+--...-+...|+.
T Consensus 83 a~~~gi~v~~e~el~~~~~~~~~~IaVTGTnGKTTTt~ll~~iL~~ 128 (454)
T PRK01368 83 AKNFNIPITSDIDLLFEKSKNLKFIAITGTNGKSTTTALISHILNS 128 (454)
T ss_pred HHHCCCceecHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHh
Confidence 23444333 2233323333334 5777666666666664
|
|
| >cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=91.55 E-value=0.74 Score=38.87 Aligned_cols=44 Identities=16% Similarity=0.157 Sum_probs=35.6
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV 606 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~ 606 (656)
=+..+|+||..+.++..|.++|+||...++... .++.++-.+-+
T Consensus 4 ei~~~Dr~gLfa~i~~~l~~~~l~I~~A~I~Tt-~~~~v~D~F~V 47 (76)
T cd04927 4 KLFCSDRKGLLHDVTEVLYELELTIERVKVSTT-PDGRVLDLFFI 47 (76)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCeEEEEEEEEC-CCCEEEEEEEE
Confidence 356789999999999999999999999999754 35666555544
|
This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.89 Score=50.69 Aligned_cols=104 Identities=22% Similarity=0.302 Sum_probs=63.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hh----HHH-HcCCeec---CHHHHhccCCEEEEccCCCcccc--
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--AD----KAR-AVGVELV---SFDQALATADFISLHMPLNPTTS-- 298 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~----~a~-~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~-- 298 (656)
++.|||+|.+|.++|+.|+..|++|.++|.... .. ... ..|+.+. + .+.+.++|+|+..--..+...
T Consensus 1 ~~~~iG~G~~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~-~~~~~~~d~vv~sp~i~~~~p~~ 79 (433)
T TIGR01087 1 KILILGLGKTGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLH-LEDLNNADLVVKSPGIPPDHPLV 79 (433)
T ss_pred CEEEEEeCHhHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCc-hHHhccCCEEEECCCCCCCCHHH
Confidence 378999999999999999999999999996542 11 111 2477543 3 455688998876442222211
Q ss_pred --------ccccHH-HHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 --------KIFNDE-TFAK-MKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 --------~li~~~-~l~~-mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
.++.+. .+.. ++.-.+-|--+.|+--...-+...|+.
T Consensus 80 ~~a~~~~i~i~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~ 126 (433)
T TIGR01087 80 QAAAKRGIPVVGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKA 126 (433)
T ss_pred HHHHHCCCcEEEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 123332 2222 333334444446887666666666664
|
|
| >COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=0.39 Score=46.87 Aligned_cols=35 Identities=14% Similarity=0.360 Sum_probs=30.8
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF 595 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~ 595 (656)
+.+...|+||++.+++.+|.++||||.+|..-+..
T Consensus 95 v~v~a~DrpgIv~~~T~lf~~~~inie~L~~~~~~ 129 (176)
T COG2716 95 VYVDANDRPGIVEEFTALFDGHGINIENLVSRTYP 129 (176)
T ss_pred EEEEecCCccHHHHHHHHHHhcCCchhhceeeeee
Confidence 34678899999999999999999999999996643
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=91.42 E-value=0.58 Score=49.89 Aligned_cols=45 Identities=36% Similarity=0.477 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.+|...++.++.+|.+ |++.++.. ..+.++++|+
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga 209 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGA 209 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 389999999999999999999999998 99988764 3344555554
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=91.36 E-value=0.76 Score=48.82 Aligned_cols=90 Identities=20% Similarity=0.221 Sum_probs=62.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecC-HHHHhccCCEEEEccCCCccccc--------
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSK-------- 299 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~-l~ell~~aDvV~l~~Plt~~T~~-------- 299 (656)
|++++|||-=.--..+++.|...|++|..|.-....... .|+...+ .++.++++|+|++-+|.+.+.-.
T Consensus 1 ~~~~~v~ggd~r~~~~~~~l~~~g~~v~~~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~ 78 (287)
T TIGR02853 1 GIHIAVIGGDARQLELIRKLEELDAKISLIGFDQLEDGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNE 78 (287)
T ss_pred CcEEEEEcccHHHHHHHHHHHHCCCEEEEEecccccccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccC
Confidence 689999999999999999999999998776532110101 1555544 44558999999999997665321
Q ss_pred --cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 --IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 --li~~~~l~~mK~gailINvaRg 321 (656)
.++++.++.|+++++ +-+|.+
T Consensus 79 ~~~l~~~~l~~~~~~~~-~~~G~~ 101 (287)
T TIGR02853 79 KVVLTPELLESTKGHCT-IYVGIS 101 (287)
T ss_pred CccccHHHHHhcCCCCE-EEEecC
Confidence 246778888887654 444433
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK08644 thiamine biosynthesis protein ThiF; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=0.35 Score=49.03 Aligned_cols=37 Identities=24% Similarity=0.271 Sum_probs=32.4
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|..++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 24 EKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 35889999999999999999999998887 48888765
|
|
| >PTZ00325 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.27 E-value=0.49 Score=51.10 Aligned_cols=67 Identities=19% Similarity=0.222 Sum_probs=45.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhc--CCCEEEEECCCCChhHHHHc-----CCeec---C---HHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKG--LGMNVIAHDPYAPADKARAV-----GVELV---S---FDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~~~-----g~~~~---~---l~ell~~aDvV~l~~ 291 (656)
-++.++|+|||. |.||..+|..+.. ...++..+|.......+.++ ..... + ..+.++.||+|++++
T Consensus 5 ~~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di~~~~g~a~Dl~~~~~~~~v~~~td~~~~~~~l~gaDvVVita 84 (321)
T PTZ00325 5 ALKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDIVGAPGVAADLSHIDTPAKVTGYADGELWEKALRGADLVLICA 84 (321)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEecCCCcccccchhhcCcCceEEEecCCCchHHHhCCCCEEEECC
Confidence 356779999999 9999999999884 44689999974322211110 11111 1 257899999999877
Q ss_pred C
Q 006212 292 P 292 (656)
Q Consensus 292 P 292 (656)
-
T Consensus 85 G 85 (321)
T PTZ00325 85 G 85 (321)
T ss_pred C
Confidence 5
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.2 Score=48.02 Aligned_cols=64 Identities=22% Similarity=0.194 Sum_probs=43.6
Q ss_pred CEEEEEec-ChhHHHHHHHHh---cCCCEEEEECCCCChh-H---HHHcC--C--e---ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPAD-K---ARAVG--V--E---LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk---~~G~~Vi~~d~~~~~~-~---a~~~g--~--~---~~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||. |.||+.+|..++ ..+..+..+|+....+ . ..+.+ . . ..++.+.++++|+|++|+-.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 58999999 999999998874 3456888898654210 0 11111 1 1 12566788999999998764
|
|
| >PRK05597 molybdopterin biosynthesis protein MoeB; Validated | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.3 Score=53.43 Aligned_cols=37 Identities=30% Similarity=0.392 Sum_probs=32.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 24 ~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 24 QSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 45899999999999999999999998886 67777754
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=91.10 E-value=0.46 Score=51.11 Aligned_cols=76 Identities=18% Similarity=0.296 Sum_probs=51.6
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCC-CEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+|+||| .|..|+.+.+.|.... +++.......... ..+.++.++++|++|+|+|... ..+...
T Consensus 3 ~~VaIvGAtGy~G~eLlrlL~~hp~~~l~~~~s~~~~~--------~~~~~~~~~~~DvvFlalp~~~------s~~~~~ 68 (313)
T PRK11863 3 PKVFIDGEAGTTGLQIRERLAGRSDIELLSIPEAKRKD--------AAARRELLNAADVAILCLPDDA------AREAVA 68 (313)
T ss_pred cEEEEECCCCHHHHHHHHHHhcCCCeEEEEEecCCCCc--------ccCchhhhcCCCEEEECCCHHH------HHHHHH
Confidence 4799999 7999999999999774 5666553322111 1234556788999999999432 222222
Q ss_pred c-CCCCcEEEEcC
Q 006212 308 K-MKKGVRIVNVA 319 (656)
Q Consensus 308 ~-mK~gailINva 319 (656)
. .+.|+.+||.+
T Consensus 69 ~~~~~g~~VIDlS 81 (313)
T PRK11863 69 LIDNPATRVIDAS 81 (313)
T ss_pred HHHhCCCEEEECC
Confidence 2 26789999987
|
|
| >COG0078 ArgF Ornithine carbamoyltransferase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.09 E-value=4.9 Score=42.95 Aligned_cols=93 Identities=26% Similarity=0.348 Sum_probs=65.4
Q ss_pred cCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC--C-h---hH----HHHcC--Ceec-CHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA--P-A---DK----ARAVG--VELV-SFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~--~-~---~~----a~~~g--~~~~-~l~ell~~aDvV~l~~P 292 (656)
+.|+|+..+|=| +++.++...+..+||+|...-|.. + . +. +++.| +.++ ++++.++.||+|..-+.
T Consensus 151 l~g~k~a~vGDgNNv~nSl~~~~a~~G~dv~ia~Pk~~~p~~~~~~~a~~~a~~~g~~i~~t~d~~eAv~gADvvyTDvW 230 (310)
T COG0078 151 LKGLKLAYVGDGNNVANSLLLAAAKLGMDVRIATPKGYEPDPEVVEKAKENAKESGGKITLTEDPEEAVKGADVVYTDVW 230 (310)
T ss_pred ccCcEEEEEcCcchHHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHhcCCeEEEecCHHHHhCCCCEEEecCc
Confidence 999999999877 588888888889999998876642 1 1 12 23335 3444 89999999999998765
Q ss_pred CC--cccc-----------ccccHHHHhcCCCCcEEEEcC
Q 006212 293 LN--PTTS-----------KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt--~~T~-----------~li~~~~l~~mK~gailINva 319 (656)
.. ++.+ .-+|.+.++.-++++++.-|-
T Consensus 231 vSMGee~e~~~~~~~~~~~yQVn~~lm~~a~~~~ifmHCL 270 (310)
T COG0078 231 VSMGEEAEAEERRIAFLPPYQVNEELMALAGPDAIFMHCL 270 (310)
T ss_pred ccCcchhhhHHHHHhhCCCceeCHHHHhhcCCCeEEEeCC
Confidence 43 1221 345666666667777777773
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=91.01 E-value=0.31 Score=44.23 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=57.3
Q ss_pred ecChhHHHHHHHHhcC----CCEEEE-ECCC--CChhH-H-HHcCCeecCHHHHhc--cCCEEEEccCCCccccccccHH
Q 006212 236 GFGKVGSEVARRAKGL----GMNVIA-HDPY--APADK-A-RAVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 236 GlG~IG~~vA~~lk~~----G~~Vi~-~d~~--~~~~~-a-~~~g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+|.||+.+++.++.. +++|.+ +|+. ..... . ........++++++. ..|+|+=|.+..+ +.+-
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~~~~-----~~~~ 75 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTSSEA-----VAEY 75 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SSCHH-----HHHH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCCchH-----HHHH
Confidence 8999999999999854 677766 4665 11111 1 122234558999998 9999999966322 1222
Q ss_pred HHhcCCCCcEEEEcCCCchhc---HHHHHHhHhc
Q 006212 305 TFAKMKKGVRIVNVARGGVID---EEALVRALDS 335 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivd---e~aL~~aL~~ 335 (656)
....|+.|.-+|-+..+.+.| .+.|.++.++
T Consensus 76 ~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~ 109 (117)
T PF03447_consen 76 YEKALERGKHVVTANKGALADEALYEELREAARK 109 (117)
T ss_dssp HHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHH
Confidence 344467888888888888772 4455544443
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=91.00 E-value=0.75 Score=50.06 Aligned_cols=45 Identities=33% Similarity=0.451 Sum_probs=37.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++..|. +|++.|... ..+.++++|+
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga 237 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGA 237 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999 699988765 3455666665
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=90.99 E-value=0.81 Score=38.90 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=43.3
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC---CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE---EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~---~~-~~e~l~~L~~ 620 (656)
+=+...|+||.+..|+..|.+.|++|...++.-...|+.+.=++-+|. ++ +++.+++|++
T Consensus 3 lev~a~DRpGLL~~i~~~l~~~~l~i~~AkI~~~T~Gerv~D~Fyv~~~g~kl~d~~~~~~L~~ 66 (75)
T cd04896 3 LQIRCVDQKGLLYDILRTSKDCNIQISYGRFSSKVKGYREVDLFIVQSDGKKIMDPKKQAALCA 66 (75)
T ss_pred EEEEeCCcccHHHHHHHHHHHCCeEEEEEEEecCcccCEEEEEEEEeCCCCccCCHHHHHHHHH
Confidence 346789999999999999999999999999974445666655544432 33 4455566543
|
This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PLN02178 cinnamyl-alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=90.98 E-value=0.85 Score=50.03 Aligned_cols=45 Identities=24% Similarity=0.429 Sum_probs=36.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+|++.+.... .+.++++|+
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~lGa 224 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRLGA 224 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhCCC
Confidence 589999999999999999999999999999876532 234445554
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.95 E-value=0.65 Score=51.48 Aligned_cols=63 Identities=17% Similarity=0.166 Sum_probs=51.0
Q ss_pred cCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~ 291 (656)
..|++|+|+|+.- -...+++.|...|.+|.+|||...... ..++.+. ++++.++.||.|++..
T Consensus 294 ~~~~~i~vlGlafK~~t~D~R~Sp~~~i~~~L~~~G~~v~~~DP~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 367 (388)
T PRK15057 294 RKPQVVGIYRLIMKSGSDNFRASSIQGIMKRIKAKGVEVIIYEPVMKEDS--FFNSRLERDLATFKQQADVIISNR 367 (388)
T ss_pred hcCCEEEEEcceeCCCCCccccChHHHHHHHHHhCCCEEEEECCCCCchh--hcCCeeeCCHHHHHHhCCEEEEcC
Confidence 3789999999943 566899999999999999999863322 4467665 8999999999999854
|
|
| >PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional | Back alignment and domain information |
|---|
Probab=90.90 E-value=0.26 Score=49.25 Aligned_cols=44 Identities=14% Similarity=0.172 Sum_probs=33.9
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEE
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG 605 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~ 605 (656)
-+.-+|+||+++.|+..|+++|+||.+.+..+-...-..+|.++
T Consensus 12 TviG~DrpGIVa~vs~~l~~~g~NI~ds~~t~lgg~Fa~i~lvs 55 (190)
T PRK11589 12 TALGADRPGIVNTITRHVSSCGCNIEDSRLAMLGEEFTFIMLLS 55 (190)
T ss_pred EEEcCCCChHHHHHHHHHHHcCCCeeehhhHhhCCceEEEEEEe
Confidence 34579999999999999999999999999876542223344453
|
|
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=90.62 E-value=0.65 Score=49.42 Aligned_cols=63 Identities=22% Similarity=0.254 Sum_probs=45.5
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeec--------CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV--------SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aDvV~l~~P 292 (656)
++|.|.| .|.||+.+++.|...|++|.+.++.... ......+++++ ++.++++.+|+|+.+.+
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 3788998 6999999999999999999998876422 11223455432 35667899999876543
|
|
| >cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.48 Score=38.88 Aligned_cols=58 Identities=14% Similarity=0.171 Sum_probs=41.6
Q ss_pred EEEecCCCCchhhHHhhhhcCCccccceEeeeecc-CccEEEEEEeCCCC-CHHHHHHHhc
Q 006212 562 LCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR-RNHGIMAIGVDEEP-NQDSLKEIGK 620 (656)
Q Consensus 562 lv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~-gg~al~~i~~D~~~-~~e~l~~L~~ 620 (656)
-+.-+|+||.+.++.++|++ +.||..++-.|... ...-.+.+++.++- -++++++|++
T Consensus 2 ~v~ipdkPG~l~~~~~~i~~-~~nI~~~~~~~~~~~~~~v~v~ie~~~~~~~~~i~~~L~~ 61 (68)
T cd04885 2 AVTFPERPGALKKFLELLGP-PRNITEFHYRNQGGDEARVLVGIQVPDREDLAELKERLEA 61 (68)
T ss_pred EEECCCCCCHHHHHHHHhCC-CCcEEEEEEEcCCCCceEEEEEEEeCCHHHHHHHHHHHHH
Confidence 35678999999999999999 99999998866432 22334456666542 2366777665
|
This CD includes each of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.91 Score=49.47 Aligned_cols=85 Identities=26% Similarity=0.322 Sum_probs=55.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHH-cCCeec-CH-H--------HHh--ccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARA-VGVELV-SF-D--------QAL--ATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~-~g~~~~-~l-~--------ell--~~aDvV~l~~Plt 294 (656)
.++.|+|.|.||.-.+..++.+|. +|++.|+.. ..+.|++ .|...+ +. + ++. ..+|+++-|+. .
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G-~ 248 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVG-S 248 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCC-C
Confidence 399999999999999999999985 788888876 4566666 454322 11 1 222 23788887776 2
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
+. .-...+..++++..++.++
T Consensus 249 ~~----~~~~ai~~~r~gG~v~~vG 269 (350)
T COG1063 249 PP----ALDQALEALRPGGTVVVVG 269 (350)
T ss_pred HH----HHHHHHHHhcCCCEEEEEe
Confidence 21 1134455566776666665
|
|
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=90.51 E-value=0.47 Score=47.91 Aligned_cols=63 Identities=29% Similarity=0.336 Sum_probs=48.3
Q ss_pred EEEEec-ChhHHHHHHHHhcCCCEEEEECCCCCh---hHHHHcCCeec--------CHHHHhccCCEEEEccCCC
Q 006212 232 LAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA---DKARAVGVELV--------SFDQALATADFISLHMPLN 294 (656)
Q Consensus 232 vGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~---~~a~~~g~~~~--------~l~ell~~aDvV~l~~Plt 294 (656)
|.|+|. |.+|+.+++.|...+++|.+.-+..+. ......|++.+ +|.+.++.+|.|++++|..
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCcc
Confidence 578885 999999999999888988887665432 33455677532 3667899999999999854
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=90.50 E-value=1.2 Score=47.66 Aligned_cols=45 Identities=31% Similarity=0.474 Sum_probs=36.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.++.|.|.|.+|..+++.++++|++|++.++.. ..+.+.+.|+
T Consensus 169 ~g~~vlV~g~g~vG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g~ 214 (337)
T cd05283 169 PGKRVGVVGIGGLGHLAVKFAKALGAEVTAFSRSPSKKEDALKLGA 214 (337)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHcCC
Confidence 47899999999999999999999999999988764 3344555554
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic |
| >PRK07877 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.49 E-value=0.36 Score=57.52 Aligned_cols=96 Identities=16% Similarity=0.187 Sum_probs=62.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC------Chh-------------HH----HHc--CCe--e--
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA------PAD-------------KA----RAV--GVE--L-- 274 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~------~~~-------------~a----~~~--g~~--~-- 274 (656)
.|.+++|+|+|+| +|+.+|..|...|. ++..+|... ... .+ .+. .++ .
T Consensus 104 ~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv~~a~~~l~~inp~i~v~~~~ 182 (722)
T PRK07877 104 RLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKAVVAARRIAELDPYLPVEVFT 182 (722)
T ss_pred HHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHHHHHHHHHHHHCCCCEEEEEe
Confidence 5899999999999 89999999997774 777766421 000 01 011 111 1
Q ss_pred -----cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 275 -----VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 275 -----~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
.++++++..+|+|+-|+- +-+++.++++.....=+ .+|.-.+-++.++
T Consensus 183 ~~i~~~n~~~~l~~~DlVvD~~D-~~~~R~~ln~~a~~~~i--P~i~~~~~~g~~~ 235 (722)
T PRK07877 183 DGLTEDNVDAFLDGLDVVVEECD-SLDVKVLLREAARARRI--PVLMATSDRGLLD 235 (722)
T ss_pred ccCCHHHHHHHhcCCCEEEECCC-CHHHHHHHHHHHHHcCC--CEEEEcCCCCCcC
Confidence 147788999999988887 56788888877665322 3555554444444
|
|
| >PRK05600 thiamine biosynthesis protein ThiF; Validated | Back alignment and domain information |
|---|
Probab=90.45 E-value=0.24 Score=54.50 Aligned_cols=52 Identities=13% Similarity=0.157 Sum_probs=38.7
Q ss_pred HHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
+.++++-..|... .-..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.
T Consensus 22 y~Rqi~l~~~g~~--~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 22 TARQLALPGFGIE--QQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hhcccchhhhCHH--HHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3444443345432 1246899999999999999999999999886 78888764
|
|
| >PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.44 E-value=1.2 Score=52.70 Aligned_cols=36 Identities=25% Similarity=0.260 Sum_probs=32.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..||+|.|||-|..|...|..|+..|++|.+|++..
T Consensus 308 ~~~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~ 343 (639)
T PRK12809 308 PRSEKVAVIGAGPAGLGCADILARAGVQVDVFDRHP 343 (639)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCC
Confidence 469999999999999999999999999999998653
|
|
| >PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.83 Score=53.98 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=32.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-.|++|.|||.|..|.+.|..|+..|++|++||+.
T Consensus 325 ~~~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~ 359 (654)
T PRK12769 325 KSDKRVAIIGAGPAGLACADVLARNGVAVTVYDRH 359 (654)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 46999999999999999999999999999999864
|
|
| >cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases | Back alignment and domain information |
|---|
Probab=90.43 E-value=1.1 Score=48.24 Aligned_cols=90 Identities=21% Similarity=0.229 Sum_probs=55.7
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--cC---Ceec------CHHHHhccCCEEEEccCCC-
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--VG---VELV------SFDQALATADFISLHMPLN- 294 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~g---~~~~------~l~ell~~aDvV~l~~Plt- 294 (656)
.+|+|||. |.+|.++|-.+...| -++..+|.......+.+ .+ .... ++.+.+++||+|+++.-..
T Consensus 1 ~KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~~a~g~alDL~~~~~~~~i~~~~~~~~~y~~~~daDivvitaG~~~ 80 (310)
T cd01337 1 VKVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIVNTPGVAADLSHINTPAKVTGYLGPEELKKALKGADVVVIPAGVPR 80 (310)
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecCccceeehHhHhCCCcceEEEecCCCchHHhcCCCCEEEEeCCCCC
Confidence 37999999 999999999998666 47888997621111111 11 1111 2357899999999887532
Q ss_pred -c-cccc-cc--cHH-------HHhcCCCCcEEEEcC
Q 006212 295 -P-TTSK-IF--NDE-------TFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 -~-~T~~-li--~~~-------~l~~mK~gailINva 319 (656)
+ ++|. ++ |.+ .+..-.|.+++++++
T Consensus 81 k~g~tR~dll~~N~~i~~~i~~~i~~~~p~a~vivvt 117 (310)
T cd01337 81 KPGMTRDDLFNINAGIVRDLATAVAKACPKALILIIS 117 (310)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEcc
Confidence 1 2221 11 111 222346788888886
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) | Back alignment and domain information |
|---|
Probab=90.41 E-value=1.1 Score=37.86 Aligned_cols=59 Identities=12% Similarity=0.157 Sum_probs=42.6
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe---CC-CC-CHHHHHHHhc
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV---DE-EP-NQDSLKEIGK 620 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~---D~-~~-~~e~l~~L~~ 620 (656)
.+=+...|+||.+..|+..|.++|++|..-.+.- .|+.+.=++-+ +. ++ +++.+++|++
T Consensus 3 viev~a~DRpGLL~~i~~~l~~~gl~I~~AkIsT--~Gerv~DvFyV~d~~g~kl~d~~~~~~l~~ 66 (72)
T cd04895 3 LVKVDSARKPGILLEAVQVLTDLDLCITKAYISS--DGGWFMDVFHVTDQLGNKLTDDSLIAYIEK 66 (72)
T ss_pred EEEEEECCcCCHHHHHHHHHHHCCcEEEEEEEee--cCCeEEEEEEEECCCCCCCCCHHHHHHHHH
Confidence 3446789999999999999999999999999863 34555444333 32 23 4577777764
|
This CD includes the N-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.34 E-value=0.68 Score=48.87 Aligned_cols=63 Identities=19% Similarity=0.176 Sum_probs=44.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCeecCHHHH-hccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELVSFDQA-LATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~~~l~el-l~~aDvV~l~~Pl 293 (656)
++++.|+|.|-.+++++..|+..|. +|.+++|.... ..+...+.... +++ ...+|+|+.|+|.
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~--~~~~~~~~dlvINaTp~ 188 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWR--PDLGGIEADILVNVTPI 188 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcch--hhcccccCCEEEECCcc
Confidence 4689999999999999999999897 59999987522 22222332211 111 2457888888884
|
|
| >PRK08223 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=90.31 E-value=0.46 Score=50.50 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=31.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
.|++++|.|||+|-+|..+|+.|...|. ++..+|..
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 5899999999999999999999998886 66667654
|
|
| >COG0540 PyrB Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.31 E-value=2.1 Score=45.72 Aligned_cols=63 Identities=21% Similarity=0.331 Sum_probs=48.7
Q ss_pred cCCCEEEEEe---cChhHHHHHHHHhcCCCEEEEECCCC--Ch----hHHHHcCC--eecC-HHHHhccCCEEEE
Q 006212 227 LVGKTLAVMG---FGKVGSEVARRAKGLGMNVIAHDPYA--PA----DKARAVGV--ELVS-FDQALATADFISL 289 (656)
Q Consensus 227 l~gktvGIIG---lG~IG~~vA~~lk~~G~~Vi~~d~~~--~~----~~a~~~g~--~~~~-l~ell~~aDvV~l 289 (656)
+.|++|+|+| +|+.-++.++.|+.||.+|..+.|.. ++ +.....|. ...+ .++.++++|++.+
T Consensus 156 ~~gl~iaivGDlkhsRva~S~~~~L~~~ga~v~lvsP~~L~~p~~i~~~l~~~~~~~~~~~~~e~~i~~~DVl~~ 230 (316)
T COG0540 156 LDGLKIAIVGDLKHSRVAHSNIQALKRFGAEVYLVSPETLLPPEYILEELEEKGGVVVEHDSDEEVIEEADVLYM 230 (316)
T ss_pred cCCcEEEEEccccchHHHHHHHHHHHHcCCEEEEECchHhCCchhHHHHHhhcCceEEEecchhhhhccCCEEEe
Confidence 8899999999 89999999999999999999999864 21 22333332 2344 4559999999955
|
|
| >PRK11092 bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=0.66 Score=55.18 Aligned_cols=70 Identities=9% Similarity=0.117 Sum_probs=53.8
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~~v 630 (656)
.|.+...|++|+++.|++++++.++||.++++.. .+++.+.+. |++.+...- .++.+|+++++|.+|+-+
T Consensus 628 ~i~I~~~dr~GlL~dI~~~i~~~~~nI~~v~~~~-~~~~~~~~~~~ieV~~~~~L~~i~~~Lr~i~~V~~V~R~ 700 (702)
T PRK11092 628 EIKVEMFNHQGALANLTAAINTTGSNIQSLNTEE-KDGRVYSAFIRLTARDRVHLANIMRKIRVMPDVIKVTRN 700 (702)
T ss_pred EEEEEEeCCCCHHHHHHHHHHHCCCCeEEEEEEE-cCCCEEEEEEEEEECCHHHHHHHHHHHhCCCCcceEEEc
Confidence 3456789999999999999999999999999743 334555544 555554333 899999999999998643
|
|
| >PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.68 Score=56.10 Aligned_cols=106 Identities=13% Similarity=0.214 Sum_probs=65.8
Q ss_pred CEEEEEecChhHHHH-HHHHhcCCCEEEEECCCCCh--hHHHHcCCeec--CHHHHhccCCEEEEccCCCcccc------
Q 006212 230 KTLAVMGFGKVGSEV-ARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLHMPLNPTTS------ 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~v-A~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~------ 298 (656)
+++.|+|+|.+|.+. |+.|+..|++|.++|..... ....+.|+.+. ...+.+..+|+|+..--..+.+.
T Consensus 5 ~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~~~~~~~L~~~gi~~~~g~~~~~~~~~d~vV~SpgI~~~~p~~~~a~ 84 (809)
T PRK14573 5 LFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSEGKTVEKLKAKGARFFLGHQEEHVPEDAVVVYSSSISKDNVEYLSAK 84 (809)
T ss_pred ceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHcCCCCEEEECCCcCCCCHHHHHHH
Confidence 369999999999998 99999999999999975422 23345577653 23356778999977533222221
Q ss_pred ----ccccHHHH-hc-CCC-CcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 ----KIFNDETF-AK-MKK-GVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ----~li~~~~l-~~-mK~-gailINvaRg~ivde~aL~~aL~~ 335 (656)
.++++.++ .. ++. ..+-|--+.|+--...-+...|+.
T Consensus 85 ~~gi~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~li~~iL~~ 128 (809)
T PRK14573 85 SRGNRLVHRAELLAELMQEQISILVSGSHGKTTVSSLITAIFQE 128 (809)
T ss_pred HCCCcEEeHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 22333333 22 332 233333345877656656666665
|
|
| >PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.12 E-value=0.9 Score=51.04 Aligned_cols=104 Identities=17% Similarity=0.259 Sum_probs=63.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh------hHHHHcCCeec---CHH-----HHhccCCEEEEccCCCcc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA------DKARAVGVELV---SFD-----QALATADFISLHMPLNPT 296 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~------~~a~~~g~~~~---~l~-----ell~~aDvV~l~~Plt~~ 296 (656)
+|.|||+|..|.+.|+.|...|.+|.++|..... ....+.|+.+. ..+ +.+.+.|.|+.... -+.
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~g~~~~~~~~~~~~~~~d~vv~s~g-i~~ 80 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSPELLERQQELEQEGITVKLGKPLELESFQPWLDQPDLVVVSPG-IPW 80 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCchhhHHHHHHHHHcCCEEEECCccchhhhhHHhhcCCEEEECCC-CCC
Confidence 5899999999999999999999999999975421 12345576542 222 46788999877443 332
Q ss_pred ccc-----------cccHHHH--hcCCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 297 TSK-----------IFNDETF--AKMKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T~~-----------li~~~~l--~~mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
... ++.+..+ ..+++..+|-=+ +.|+--...-+...|+.
T Consensus 81 ~~~~~~~a~~~~i~v~~~~~~~~~~~~~~~~I~VTGT~GKTTTt~ml~~iL~~ 133 (459)
T PRK02705 81 DHPTLVELRERGIEVIGEIELAWRALKHIPWVGITGTNGKTTVTALLAHILQA 133 (459)
T ss_pred CCHHHHHHHHcCCcEEEhHHHHHHhhcCCCEEEEeCCCchHHHHHHHHHHHHH
Confidence 222 1222222 223333333333 35776656655556654
|
|
| >PLN02740 Alcohol dehydrogenase-like | Back alignment and domain information |
|---|
Probab=90.11 E-value=1.1 Score=49.04 Aligned_cols=45 Identities=31% Similarity=0.588 Sum_probs=37.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+
T Consensus 198 ~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga 244 (381)
T PLN02740 198 AGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI 244 (381)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC
Confidence 58999999999999999999999998 699988765 3455566664
|
|
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.74 Score=45.20 Aligned_cols=31 Identities=26% Similarity=0.317 Sum_probs=27.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY 261 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~ 261 (656)
+|+|||+|.+|..+|+.|...|. ++..+|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999998887 58888764
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >PLN02272 glyceraldehyde-3-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.94 E-value=0.46 Score=52.96 Aligned_cols=35 Identities=34% Similarity=0.660 Sum_probs=29.4
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEE-ECCCCCh
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIA-HDPYAPA 264 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~-~d~~~~~ 264 (656)
.+|||.|||+||+.+++.+.. ++++|++ .||....
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~~~~ 122 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPFIDA 122 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCCCCH
Confidence 489999999999999999874 7999988 6666433
|
|
| >PRK06382 threonine dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=0.43 Score=53.13 Aligned_cols=68 Identities=15% Similarity=0.182 Sum_probs=49.5
Q ss_pred eecCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeee---ccCccEEEEEEeCCC--CCH-HHHHHHhcC
Q 006212 554 ASLEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRT---FRRNHGIMAIGVDEE--PNQ-DSLKEIGKV 621 (656)
Q Consensus 554 ~~g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~---~~gg~al~~i~~D~~--~~~-e~l~~L~~~ 621 (656)
..+....+.+..+|+||.+++++.+++++++||..+...|. ...+.....+.++.. ... ++++.|++.
T Consensus 326 ~~~~~~rl~v~v~D~pG~L~~l~~ii~~~~~nI~~v~~~~~~~~~~~~~~~v~i~vet~~~~~~~~v~~~L~~~ 399 (406)
T PRK06382 326 NLGQLVRIECNIPDRPGNLYRIANAIASNGGNIYHAEVDNLRKETPPGFQSVTFTVNVRGQDHLDRILNALREM 399 (406)
T ss_pred hcCCEEEEEEEcCCCCCHHHHHHHHHhcCCCcEEEEEEeeccccCCCCcEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 44455667778999999999999999999999988877642 233455556666553 333 778888764
|
|
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=89.74 E-value=1.1 Score=48.34 Aligned_cols=45 Identities=33% Similarity=0.425 Sum_probs=36.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|...++.++.+|.+ |++.|+.. ..+.+++.|+
T Consensus 176 ~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga 222 (358)
T TIGR03451 176 RGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGA 222 (358)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCC
Confidence 488999999999999999999999985 99888765 3445555554
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.70 E-value=1.3 Score=47.69 Aligned_cols=44 Identities=16% Similarity=0.091 Sum_probs=33.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-C-CCEEEEECCCC-ChhHHHHcC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYA-PADKARAVG 271 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~-G~~Vi~~d~~~-~~~~a~~~g 271 (656)
.|.+|.|+|.|.||...++.++. + +.+|++.|+.. ..+.++..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~~~ 209 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSFAD 209 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhhcC
Confidence 48899999999999998888875 5 47899998765 333444333
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.59 Score=50.53 Aligned_cols=63 Identities=13% Similarity=0.072 Sum_probs=43.2
Q ss_pred EEEEEec-ChhHHHHHHHHhcCC-------CEEEEECCCCChhHHH--Hc-----------CCe-ecCHHHHhccCCEEE
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLG-------MNVIAHDPYAPADKAR--AV-----------GVE-LVSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G-------~~Vi~~d~~~~~~~a~--~~-----------g~~-~~~l~ell~~aDvV~ 288 (656)
+|+|+|. |.+|+.+|..|...+ .+|..+|.....+.+. .. .+. ..++.+.+++||+|+
T Consensus 4 kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI 83 (325)
T cd01336 4 RVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAI 83 (325)
T ss_pred EEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEE
Confidence 6999999 999999999987643 4899998743211111 11 011 125668899999998
Q ss_pred EccCC
Q 006212 289 LHMPL 293 (656)
Q Consensus 289 l~~Pl 293 (656)
.+.-.
T Consensus 84 ~tAG~ 88 (325)
T cd01336 84 LVGAM 88 (325)
T ss_pred EeCCc
Confidence 87653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PLN00106 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.66 E-value=0.72 Score=49.89 Aligned_cols=64 Identities=23% Similarity=0.201 Sum_probs=44.6
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHc-------CCee----cCHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV-------GVEL----VSFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~-------g~~~----~~l~ell~~aDvV~l~~P 292 (656)
.++|+|+|. |.+|..+|..|...+ -++..+|.......+.++ .+.- .++.+.+++||+|+++.-
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~~~g~a~Dl~~~~~~~~i~~~~~~~d~~~~l~~aDiVVitAG 95 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIANTPGVAADVSHINTPAQVRGFLGDDQLGDALKGADLVIIPAG 95 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCCCCeeEchhhhCCcCceEEEEeCCCCHHHHcCCCCEEEEeCC
Confidence 469999999 999999999998444 489999976521111111 1111 134688999999998765
|
|
| >PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.61 E-value=1 Score=50.49 Aligned_cols=108 Identities=19% Similarity=0.179 Sum_probs=62.4
Q ss_pred cCC-CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCChh--HHHHcCCeec-C--HHHHhccCCEEEEccCCCcccc
Q 006212 227 LVG-KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPAD--KARAVGVELV-S--FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 227 l~g-ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~~--~a~~~g~~~~-~--l~ell~~aDvV~l~~Plt~~T~ 298 (656)
+.| |++.|||+|..|.+.++.|... |++|.++|...... ...+.|+.+. . -.+.+.++|+|+..- .-+.+.
T Consensus 4 ~~~~~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~~g~~~~~g~~~~~~~~~~d~vV~Sp-gI~~~~ 82 (438)
T PRK04663 4 WQGIKNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLPEDVELHSGGWNLEWLLEADLVVTNP-GIALAT 82 (438)
T ss_pred ccCCceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhhcCCEEEeCCCChHHhccCCEEEECC-CCCCCC
Confidence 345 7899999999999999999866 58999999654211 1122377552 1 223457899876644 332221
Q ss_pred c-----------cccHHHH-h-cCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 299 K-----------IFNDETF-A-KMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ~-----------li~~~~l-~-~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
. ++.+..+ . .++...+-|--+-|+--...-+...|+.
T Consensus 83 p~~~~a~~~gi~i~~~~el~~~~~~~~~I~VTGTnGKTTTt~ll~~iL~~ 132 (438)
T PRK04663 83 PEIQQVLAAGIPVVGDIELFAWAVDKPVIAITGSNGKSTVTDLTGVMAKA 132 (438)
T ss_pred HHHHHHHHCCCcEEEHHHHHHhhcCCCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 1 2333222 2 2333333333335777655555666654
|
|
| >cd05290 LDH_3 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.59 E-value=0.69 Score=49.64 Aligned_cols=62 Identities=27% Similarity=0.334 Sum_probs=42.5
Q ss_pred EEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChh--HHHHcC----------Cee-cCHHHHhccCCEEEEccC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPAD--KARAVG----------VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~--~a~~~g----------~~~-~~l~ell~~aDvV~l~~P 292 (656)
+|+|||.|.+|..+|..+...+. ++..+|...... .+.++. +.. .+-.+.+++||+|+++.-
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~a~g~a~DL~~~~~~~~~~~~~i~~~~y~~~~~aDivvitaG 77 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNEGVAEGEALDFHHATALTYSTNTKIRAGDYDDCADADIIVITAG 77 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcchhhHHHHHHHhhhccCCCCCEEEEECCHHHhCCCCEEEECCC
Confidence 58999999999999998875554 799999865322 111110 111 122477899999999765
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=89.54 E-value=0.78 Score=51.58 Aligned_cols=103 Identities=17% Similarity=0.269 Sum_probs=62.7
Q ss_pred EEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec-C-HHHHhccCCEEEEccCCCcccc--------
Q 006212 232 LAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV-S-FDQALATADFISLHMPLNPTTS-------- 298 (656)
Q Consensus 232 vGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~-~-l~ell~~aDvV~l~~Plt~~T~-------- 298 (656)
+-|||+|.+|.+ +|+.|+..|.+|.++|..... +..++.|+... . -.+.+.++|+|+.. |.-+...
T Consensus 2 ~~~iGiggsGm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~s-pgi~~~~p~~~~a~~ 80 (448)
T TIGR01082 2 IHFVGIGGIGMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVS-AAIKDDNPEIVEAKE 80 (448)
T ss_pred EEEEEECHHHHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEEC-CCCCCCCHHHHHHHH
Confidence 679999999998 999999999999999976532 22344577553 1 23456789998775 3333221
Q ss_pred ---ccccHH-HHhc-CCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 299 ---KIFNDE-TFAK-MKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 299 ---~li~~~-~l~~-mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
.++++. .+.. +++..+|-=+ +.|+--...-+...|+.
T Consensus 81 ~~i~v~~~~el~~~~~~~~~~IaITGTnGKTTTt~ll~~iL~~ 123 (448)
T TIGR01082 81 RGIPVIRRAEMLAELMRFRHSIAVAGTHGKTTTTAMIAVILKE 123 (448)
T ss_pred cCCceEeHHHHHHHHHhcCcEEEEECCCChHHHHHHHHHHHHH
Confidence 123332 2222 3332233333 35777656655666654
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.75 Score=39.60 Aligned_cols=58 Identities=14% Similarity=0.261 Sum_probs=41.0
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCC-CC-CHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDE-EP-NQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~-~~-~~e~l~~L~~ 620 (656)
+.+.-+|+||.++++.++|+ +.||..+.-.|.. ..+..++.+++++ .- -+++++.|++
T Consensus 4 l~v~ipD~PG~L~~ll~~l~--~anI~~~~y~~~~~~~~~v~i~ie~~~~~~~~~~i~~~L~~ 64 (85)
T cd04906 4 LAVTIPERPGSFKKFCELIG--PRNITEFNYRYADEKDAHIFVGVSVANGAEELAELLEDLKS 64 (85)
T ss_pred EEEecCCCCcHHHHHHHHhC--CCceeEEEEEccCCCeeEEEEEEEeCCcHHHHHHHHHHHHH
Confidence 55678999999999999999 4566666665533 3444566678776 33 4477888876
|
This CD includes the first of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) which catalyzes the committed step in branched chain amino acid biosynthesis in plants and microorganisms, the pyridoxal 5'-phosphate (PLP)-dependent dehydration/deamination of L-threonine (or L-serine) to 2-ketobutyrate (or pyruvate). ThrD-I is a cooperative, feedback-regulated (isoleucine and valine) allosteric enzyme that forms a tetramer and contains four pyridoxal phosphate moieties. Members of this CD belong to the superfamily of ACT regulatory domains. |
| >KOG2663 consensus Acetolactate synthase, small subunit [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.51 E-value=0.35 Score=49.70 Aligned_cols=72 Identities=15% Similarity=0.299 Sum_probs=50.1
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEE
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEY 627 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v 627 (656)
...|.+-|...|+||+|.+|+.+|+..|.||..+-|.-++...-.-|.|-+-. .+-+++.++|.++=.|..|
T Consensus 75 ~krHvinclVqnEpGvlsRisGvlAaRGfNIdSLvVc~tevk~LsrmTIVl~Gtd~VveQa~rQiedlVnV~aV 148 (309)
T KOG2663|consen 75 VKRHVINCLVQNEPGVLSRISGVLAARGFNIDSLVVCLTEVKALSRMTIVLQGTDGVVEQARRQIEDLVNVYAV 148 (309)
T ss_pred ccceeEEEEecCCchHHHHHHHHHHhccCCchheeeechhhhhhhhceEEEeccHHHHHHHHHHHHHhhhhhee
Confidence 34788889999999999999999999999999999976542222212333322 2344566666666555544
|
|
| >cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases | Back alignment and domain information |
|---|
Probab=89.49 E-value=0.46 Score=51.37 Aligned_cols=64 Identities=19% Similarity=0.125 Sum_probs=44.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCC-------EEEEECCCCChh----HHHHc---------CCee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAPAD----KARAV---------GVEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~-------~Vi~~d~~~~~~----~a~~~---------g~~~-~~l~ell~~aDvV 287 (656)
++|+|||. |.+|..+|..+...|. ++..+|.....+ .+.++ .+.. .+..+.+++||+|
T Consensus 3 ~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDiv 82 (322)
T cd01338 3 VRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMELEDCAFPLLAEIVITDDPNVAFKDADWA 82 (322)
T ss_pred eEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhhhhccccccCceEEecCcHHHhCCCCEE
Confidence 48999999 9999999999876554 788999743221 11111 1111 2456789999999
Q ss_pred EEccCC
Q 006212 288 SLHMPL 293 (656)
Q Consensus 288 ~l~~Pl 293 (656)
+++.-.
T Consensus 83 vitaG~ 88 (322)
T cd01338 83 LLVGAK 88 (322)
T ss_pred EEeCCC
Confidence 998753
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=89.42 E-value=2.7 Score=39.39 Aligned_cols=32 Identities=25% Similarity=0.395 Sum_probs=28.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~ 262 (656)
+|.|+|+|.+|..+|+.|...|. ++..+|+..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~ 33 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDT 33 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCC
Confidence 58999999999999999999997 788888753
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.38 E-value=0.83 Score=49.83 Aligned_cols=83 Identities=17% Similarity=0.187 Sum_probs=50.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE-CCCCCh--hHH---------------HHcCCeecCHHHHhccCCEEEE
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYAPA--DKA---------------RAVGVELVSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~--~~a---------------~~~g~~~~~l~ell~~aDvV~l 289 (656)
.+|+|+| .|.+|+.+++.|..+ .+++.++ ...... ... ....+...+.+++ .++|+|++
T Consensus 4 ~~V~I~GatG~iG~~l~~~L~~~p~~el~~~~~s~~~~G~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~DvVf~ 82 (349)
T PRK08664 4 LKVGILGATGMVGQRFVQLLANHPWFEVTALAASERSAGKTYGEAVRWQLDGPIPEEVADMEVVSTDPEAV-DDVDIVFS 82 (349)
T ss_pred cEEEEECCCCHHHHHHHHHHHcCCCceEEEEEcChhhcCCcccccccccccccccccccceEEEeCCHHHh-cCCCEEEE
Confidence 5899998 999999999999876 4687776 221110 000 0011112244444 78999999
Q ss_pred ccCCCccccccccHHHHhcC-CCCcEEEEcC
Q 006212 290 HMPLNPTTSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~m-K~gailINva 319 (656)
|+|... ..+....+ +.|+.+||.+
T Consensus 83 a~p~~~------s~~~~~~~~~~G~~vIDls 107 (349)
T PRK08664 83 ALPSDV------AGEVEEEFAKAGKPVFSNA 107 (349)
T ss_pred eCChhH------HHHHHHHHHHCCCEEEECC
Confidence 999432 12222222 5677778776
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=89.29 E-value=1.1 Score=47.56 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=29.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPY 261 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~ 261 (656)
.|+++.|+|.|.||...++.++.+|.+ |++.|..
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~ 178 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETN 178 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCC
Confidence 478899999999999999999999997 5556654
|
|
| >TIGR00691 spoT_relA (p)ppGpp synthetase, RelA/SpoT family | Back alignment and domain information |
|---|
Probab=89.04 E-value=0.87 Score=54.13 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=52.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEE--EEeCCCCCH-HHHHHHhcCCCccEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMA--IGVDEEPNQ-DSLKEIGKVPAIEEYT 628 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~--i~~D~~~~~-e~l~~L~~~~~V~~v~ 628 (656)
.|.+...|++|+++.|++++++.++||.++++... .++.+.+. |++.+...- .++.+|+++++|.+|+
T Consensus 612 ~I~I~~~dr~GlLadI~~~ia~~~~nI~~v~~~~~-~~~~~~~~~~ieV~~~~~L~~ii~~L~~i~~V~~v~ 682 (683)
T TIGR00691 612 DINIEAVDRKGVLSDLTTAISENDSNIVSISTKTY-GKREAILNITVEIKNYKHLLKIMLKIKTKNDVIVVK 682 (683)
T ss_pred EEEEEEecCCCHHHHHHHHHHHCCCCeEEEEeEEc-CCCEEEEEEEEEECCHHHHHHHHHHHhCCCCceEEe
Confidence 44567899999999999999999999999998543 34555544 444544333 8899999999998874
|
(p)ppGpp is a regulatory metabolite of the stringent response, but appears also to be involved in antibiotic biosynthesis in some species. |
| >PRK06392 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.9 Score=46.66 Aligned_cols=104 Identities=20% Similarity=0.382 Sum_probs=58.3
Q ss_pred EEEEEecChhHHHHHHHHhc--------CCCEEEE-ECCCC--------ChhHH---HHcC----C--eecCHHHHh-cc
Q 006212 231 TLAVMGFGKVGSEVARRAKG--------LGMNVIA-HDPYA--------PADKA---RAVG----V--ELVSFDQAL-AT 283 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~--------~G~~Vi~-~d~~~--------~~~~a---~~~g----~--~~~~l~ell-~~ 283 (656)
+|+|+|+|.+|+.+++.+.. ++++|.+ +|+.. ..+.. .+.| . ...++++++ .+
T Consensus 2 rVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l~~~~~~g~l~~~~~~~~~~~~ll~~~ 81 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKIISYKEKGRLEEIDYEKIKFDEIFEIK 81 (326)
T ss_pred EEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHHHHHHhcCccccCCCCcCCHHHHhcCC
Confidence 79999999999999999865 5677665 34331 11111 1111 1 112455554 46
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDS 335 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~ 335 (656)
+|+|+=|+|...+-..-. .-..+.|+.|.-+|-...|.+. ..+.|.++.++
T Consensus 82 ~DVvVE~t~~~~~g~~~~-~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~ 133 (326)
T PRK06392 82 PDVIVDVTPASKDGIREK-NLYINAFEHGIDVVTANKSGLANHWHDIMDSASK 133 (326)
T ss_pred CCEEEECCCCCCcCchHH-HHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHH
Confidence 788888887432101111 1123346677777777666665 25555554444
|
|
| >cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD) | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.8 Score=46.08 Aligned_cols=45 Identities=31% Similarity=0.451 Sum_probs=36.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|.|.+|..+++.++++|.+|++.++.. ..+.+.+.|+
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g~ 208 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLGA 208 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcCC
Confidence 47899999999999999999999999999988764 3344444554
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal |
| >PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.59 E-value=2.1 Score=50.71 Aligned_cols=36 Identities=28% Similarity=0.343 Sum_probs=32.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
-.+|+|.|||.|..|...|..|...|++|.++|+..
T Consensus 191 ~~~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~ 226 (652)
T PRK12814 191 KSGKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANE 226 (652)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCC
Confidence 368999999999999999999999999999998653
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.55 E-value=0.88 Score=49.66 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=50.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCC---EEEEE--CCCCChhHHHHcCC--eecCHH-HHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGM---NVIAH--DPYAPADKARAVGV--ELVSFD-QALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~---~Vi~~--d~~~~~~~a~~~g~--~~~~l~-ell~~aDvV~l~~Plt~~T~ 298 (656)
...+|+|+| .|.+|+.+.+.|...++ ++... .++.... ....+. .+.+++ +.+.++|+|++|+|.. .
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~~~l~~las~rsaGk~-~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~-- 81 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPYSSLKMLASARSAGKK-VTFEGRDYTVEELTEDSFDGVDIALFSAGGS-I-- 81 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCcceEEEEEccCCCCCe-eeecCceeEEEeCCHHHHcCCCEEEECCCcH-H--
Confidence 456899998 58999999999987443 33322 3222111 111122 121222 3458999999999944 2
Q ss_pred ccccHHHHhc-CCCCcEEEEcC
Q 006212 299 KIFNDETFAK-MKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~-mK~gailINva 319 (656)
..+.... .+.|+.+||.+
T Consensus 82 ---s~~~~~~~~~~g~~VIDlS 100 (344)
T PLN02383 82 ---SKKFGPIAVDKGAVVVDNS 100 (344)
T ss_pred ---HHHHHHHHHhCCCEEEECC
Confidence 2333222 36799999998
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=88.47 E-value=1.2 Score=49.53 Aligned_cols=65 Identities=12% Similarity=0.073 Sum_probs=43.9
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-----CHHH----HhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----SFDQ----ALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-----~l~e----ll~~aDvV~l~~Plt 294 (656)
...+-|+|+|.+|+.+++.|+..|.++.+.|+.. .+.....|+..+ +.+. -+++|+.|+++++.+
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~g~~vvVId~d~-~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD 313 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQRGQAVTVIVPLG-LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDND 313 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHCCCCEEEEECch-hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCCh
Confidence 5679999999999999999998899988888653 222333343221 2221 256777777777643
|
|
| >TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.4 Score=49.98 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=32.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-.|++|.|||-|.+|...|..|+..|++|..|+..
T Consensus 139 ~~~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~ 173 (467)
T TIGR01318 139 PTGKRVAVIGAGPAGLACADILARAGVQVVVFDRH 173 (467)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCeEEEEecC
Confidence 47899999999999999999999999999999865
|
This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli. |
| >TIGR01759 MalateDH-SF1 malate dehydrogenase | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.2 Score=48.10 Aligned_cols=62 Identities=19% Similarity=0.131 Sum_probs=43.4
Q ss_pred EEEEEec-ChhHHHHHHHHhcCCC-------EEEEECCCCC----hhHHHHcC---------Cee-cCHHHHhccCCEEE
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPYAP----ADKARAVG---------VEL-VSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G~-------~Vi~~d~~~~----~~~a~~~g---------~~~-~~l~ell~~aDvV~ 288 (656)
+|+|||. |.+|..+|..+...|. ++..+|.... ...+.++. +.. .+..+.+++||+|+
T Consensus 5 KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDvVV 84 (323)
T TIGR01759 5 RVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDIPPAMKALEGVAMELEDCAFPLLAGVVATTDPEEAFKDVDAAL 84 (323)
T ss_pred EEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEecCCcccccchHHHHHhhccccccCCcEEecChHHHhCCCCEEE
Confidence 7999998 9999999999886664 7999997431 11121111 111 24567899999999
Q ss_pred EccC
Q 006212 289 LHMP 292 (656)
Q Consensus 289 l~~P 292 (656)
++.-
T Consensus 85 itAG 88 (323)
T TIGR01759 85 LVGA 88 (323)
T ss_pred EeCC
Confidence 9765
|
This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms. |
| >PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.33 E-value=1.4 Score=51.13 Aligned_cols=36 Identities=28% Similarity=0.361 Sum_probs=33.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.-.|++|.|||.|.+|-..|..|+..|++|+++|+.
T Consensus 134 ~~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~ 169 (564)
T PRK12771 134 PDTGKRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAG 169 (564)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEecC
Confidence 457999999999999999999999999999999854
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.6 Score=44.92 Aligned_cols=88 Identities=26% Similarity=0.305 Sum_probs=55.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcC-Cee-cCHH-HH--hccCCEEEEccCCCcccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVG-VEL-VSFD-QA--LATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g-~~~-~~l~-el--l~~aDvV~l~~Plt~~T~~l 300 (656)
.|.++.|.|.|.+|..+++.++.+|.+ |++.++.. ..+.+++.| ... .... .. -...|+++-++....
T Consensus 97 ~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~vl~~~~~~~----- 171 (277)
T cd08255 97 LGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPADPVAADTADEIGGRGADVVIEASGSPS----- 171 (277)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCCccccccchhhhcCCCCCEEEEccCChH-----
Confidence 578999999999999999999999998 99888654 334555556 211 1111 11 124677766554211
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 006212 301 FNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..+++++-
T Consensus 172 ~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 172 ALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred HHHHHHHHhcCCcEEEEEec
Confidence 12344556777777777653
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 656 | ||||
| 2g76_A | 335 | Crystal Structure Of Human 3-Phosphoglycerate Dehyd | 1e-73 | ||
| 1ygy_A | 529 | Crystal Structure Of D-3-Phosphoglycerate Dehydroge | 5e-68 | ||
| 3ddn_A | 528 | Crystal Structure Of Hydroxypyruvic Acid Phosphate | 7e-68 | ||
| 1wwk_A | 307 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 3e-56 | ||
| 2ekl_A | 313 | Structure Of St1218 Protein From Sulfolobus Tokodai | 2e-42 | ||
| 2dbr_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-39 | ||
| 3k5p_A | 416 | Crystal Structure Of Amino Acid-Binding Act: D-Isom | 1e-38 | ||
| 2dbq_A | 334 | Crystal Structure Of Glyoxylate Reductase (Ph0597) | 3e-37 | ||
| 2d0i_A | 333 | Crystal Structure Ph0520 Protein From Pyrococcus Ho | 5e-33 | ||
| 2p9g_A | 410 | Crystal Structure Of Serine Bound G336v,G337v Doubl | 6e-33 | ||
| 2p9c_A | 410 | Crystal Structure Of Serine Bound G336v Mutant Of E | 7e-33 | ||
| 1psd_A | 409 | The Allosteric Ligand Site In The Vmax-Type Coopera | 2e-32 | ||
| 2ome_A | 336 | Crystal Structure Of Human Ctbp2 Dehydrogenase Comp | 7e-32 | ||
| 1hku_A | 358 | CtbpBARS: A DUAL-Function Protein Involved In Trans | 8e-32 | ||
| 1hl3_A | 358 | CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK | 1e-31 | ||
| 1mx3_A | 347 | Crystal Structure Of Ctbp Dehydrogenase Core Holo F | 1e-31 | ||
| 1gdh_A | 320 | Crystal Structure Of A Nad-Dependent D-Glycerate De | 1e-31 | ||
| 3ga0_A | 358 | Ctbp1BARS GLY172->glu Mutant Structure: Impairing N | 8e-31 | ||
| 1yba_A | 410 | The Active Form Of Phosphoglycerate Dehydrogenase L | 2e-30 | ||
| 2gcg_A | 330 | Ternary Crystal Structure Of Human Glyoxylate Reduc | 1e-29 | ||
| 1sc6_A | 404 | Crystal Structure Of W139g D-3-Phosphoglycerate Deh | 3e-29 | ||
| 4e5k_A | 329 | Thermostable Phosphite Dehydrogenase In Complex Wit | 4e-29 | ||
| 4e5n_A | 330 | Thermostable Phosphite Dehydrogenase In Complex Wit | 4e-29 | ||
| 2h1s_A | 328 | Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE | 8e-29 | ||
| 3gg9_A | 352 | Crystal Structure Of Putative D-3-Phosphoglycerate | 9e-29 | ||
| 4e5m_A | 329 | Thermostable Phosphite Dehydrogenase E175aA176R IN | 3e-28 | ||
| 4e5p_A | 332 | Thermostable Phosphite Dehydrogenase A176r Variant | 4e-28 | ||
| 4g2n_A | 345 | Crystal Structure Of Putative D-Isomer Specific 2-H | 5e-28 | ||
| 4ebf_A | 334 | Semet Thermostable Phosphite Dehydrogenase Glu175-A | 7e-28 | ||
| 1j49_A | 333 | Insights Into Domain Closure, Substrate Specificity | 7e-27 | ||
| 2dld_A | 337 | D-Lactate Dehydrogenase Complexed With Nadh And Oxa | 1e-26 | ||
| 3naq_A | 357 | Apo-Form Of Nad-Dependent Formate Dehydrogenase Fro | 4e-26 | ||
| 3n7u_A | 351 | Nad-Dependent Formate Dehydrogenase From Higher-Pla | 5e-26 | ||
| 1j4a_A | 333 | Insights Into Domain Closure, Substrate Specificity | 9e-26 | ||
| 3kb6_A | 334 | Crystal Structure Of D-lactate Dehydrogenase From A | 3e-25 | ||
| 2cuk_A | 311 | Crystal Structure Of Tt0316 Protein From Thermus Th | 3e-25 | ||
| 2w2l_D | 348 | Crystal Structure Of The Holo Forms Of Rhodotorula | 5e-24 | ||
| 2w2k_A | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 5e-24 | ||
| 1dxy_A | 333 | Structure Of D-2-Hydroxyisocaproate Dehydrogenase L | 6e-24 | ||
| 2w2k_B | 348 | Crystal Structure Of The Apo Forms Of Rhodotorula G | 7e-24 | ||
| 2nac_A | 393 | High Resolution Structures Of Holo And Apo Formate | 1e-22 | ||
| 2go1_A | 401 | Nad-Dependent Formate Dehydrogenase From Pseudomona | 2e-22 | ||
| 2gug_A | 401 | Nad-dependent Formate Dehydrogenase From Pseudomona | 2e-22 | ||
| 3ba1_A | 333 | Structure Of Hydroxyphenylpyruvate Reductase From C | 4e-22 | ||
| 3evt_A | 324 | Crystal Structure Of Phosphoglycerate Dehydrogenase | 5e-22 | ||
| 3fn4_A | 401 | Apo-form Of Nad-dependent Formate Dehydrogenase Fro | 7e-22 | ||
| 2gsd_A | 402 | Nad-dependent Formate Dehydrogenase From Bacterium | 7e-22 | ||
| 2o4c_A | 380 | Crystal Structure Of D-erythronate-4-phosphate Dehy | 1e-20 | ||
| 2yq4_A | 343 | Crystal Structure Of D-isomer Specific 2-hydroxyaci | 1e-20 | ||
| 4dgs_A | 340 | The Crystals Structure Of Dehydrogenase From Rhizob | 5e-20 | ||
| 2fss_A | 365 | Candida Boidinii Formate Dehydrogenase (Fdh) K47e M | 1e-18 | ||
| 2j6i_A | 364 | Candida Boidinii Formate Dehydrogenase (Fdh) C-Term | 2e-18 | ||
| 3oet_A | 381 | D-Erythronate-4-Phosphate Dehydrogenase Complexed W | 1e-17 | ||
| 3hg7_A | 324 | Crystal Structure Of D-Isomer Specific 2-Hydroxyaci | 3e-17 | ||
| 1xdw_A | 331 | Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase | 6e-16 | ||
| 4hy3_A | 365 | Crystal Structure Of A Phosphoglycerate Oxidoreduct | 1e-12 | ||
| 3gvx_A | 290 | Crystal Structure Of Glycerate Dehydrogenase Relate | 4e-11 | ||
| 3kbo_A | 315 | 2.14 Angstrom Crystal Structure Of Putative Oxidore | 6e-11 | ||
| 1qp8_A | 303 | Crystal Structure Of A Putative Formate Dehydrogena | 7e-05 |
| >pdb|2G76|A Chain A, Crystal Structure Of Human 3-Phosphoglycerate Dehydrogenase Length = 335 | Back alignment and structure |
|
| >pdb|1YGY|A Chain A, Crystal Structure Of D-3-Phosphoglycerate Dehydrogenase From Mycobacterium Tuberculosis Length = 529 | Back alignment and structure |
|
| >pdb|3DDN|A Chain A, Crystal Structure Of Hydroxypyruvic Acid Phosphate Bound D-3- Phosphoglycerate Dehydrogenase In Mycobacterium Tuberculosis Length = 528 | Back alignment and structure |
|
| >pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307 | Back alignment and structure |
|
| >pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313 | Back alignment and structure |
|
| >pdb|2DBR|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (P1) Length = 334 | Back alignment and structure |
|
| >pdb|3K5P|A Chain A, Crystal Structure Of Amino Acid-Binding Act: D-Isomer Specific 2- Hydroxyacid Dehydrogenase Catalytic Domain From Brucella Melitensis Length = 416 | Back alignment and structure |
|
| >pdb|2DBQ|A Chain A, Crystal Structure Of Glyoxylate Reductase (Ph0597) From Pyrococcus Horikoshii Ot3, Complexed With Nadp (I41) Length = 334 | Back alignment and structure |
|
| >pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333 | Back alignment and structure |
|
| >pdb|2P9G|A Chain A, Crystal Structure Of Serine Bound G336v,G337v Double Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2P9C|A Chain A, Crystal Structure Of Serine Bound G336v Mutant Of E.Coli Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|1PSD|A Chain A, The Allosteric Ligand Site In The Vmax-Type Cooperative Enzyme Phosphoglycerate Dehydrogenase Length = 409 | Back alignment and structure |
|
| >pdb|2OME|A Chain A, Crystal Structure Of Human Ctbp2 Dehydrogenase Complexed With Nad(H) Length = 336 | Back alignment and structure |
|
| >pdb|1HKU|A Chain A, CtbpBARS: A DUAL-Function Protein Involved In Transcription Corepression And Golgi Membrane Fission Length = 358 | Back alignment and structure |
|
| >pdb|1HL3|A Chain A, CtbpBARS IN TERNARY COMPLEX WITH NAD(H) AND PIDLSKK PEPTIDE Length = 358 | Back alignment and structure |
|
| >pdb|1MX3|A Chain A, Crystal Structure Of Ctbp Dehydrogenase Core Holo Form Length = 347 | Back alignment and structure |
|
| >pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320 | Back alignment and structure |
|
| >pdb|3GA0|A Chain A, Ctbp1BARS GLY172->glu Mutant Structure: Impairing Nad(H) Binding And Dimerization Length = 358 | Back alignment and structure |
|
| >pdb|1YBA|A Chain A, The Active Form Of Phosphoglycerate Dehydrogenase Length = 410 | Back alignment and structure |
|
| >pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330 | Back alignment and structure |
|
| >pdb|1SC6|A Chain A, Crystal Structure Of W139g D-3-Phosphoglycerate Dehydrogenase Complexed With Nad+ Length = 404 | Back alignment and structure |
|
| >pdb|4E5K|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad And Sulfite Length = 329 | Back alignment and structure |
|
| >pdb|4E5N|A Chain A, Thermostable Phosphite Dehydrogenase In Complex With Nad Length = 330 | Back alignment and structure |
|
| >pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328 | Back alignment and structure |
|
| >pdb|3GG9|A Chain A, Crystal Structure Of Putative D-3-Phosphoglycerate Dehydrogenase Oxidoreductase From Ralstonia Solanacearum Length = 352 | Back alignment and structure |
|
| >pdb|4E5M|A Chain A, Thermostable Phosphite Dehydrogenase E175aA176R IN COMPLEX WITH NADP Length = 329 | Back alignment and structure |
|
| >pdb|4E5P|A Chain A, Thermostable Phosphite Dehydrogenase A176r Variant In Complex With Nad Length = 332 | Back alignment and structure |
|
| >pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345 | Back alignment and structure |
|
| >pdb|4EBF|A Chain A, Semet Thermostable Phosphite Dehydrogenase Glu175-Ala Mutant Length = 334 | Back alignment and structure |
|
| >pdb|1J49|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|2DLD|A Chain A, D-Lactate Dehydrogenase Complexed With Nadh And Oxamate Length = 337 | Back alignment and structure |
|
| >pdb|3NAQ|A Chain A, Apo-Form Of Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabidopsis Thaliana Length = 357 | Back alignment and structure |
|
| >pdb|3N7U|A Chain A, Nad-Dependent Formate Dehydrogenase From Higher-Plant Arabid Thaliana In Complex With Nad And Azide Length = 351 | Back alignment and structure |
|
| >pdb|1J4A|A Chain A, Insights Into Domain Closure, Substrate Specificity And Catalysis Of D-Lactate Dehydrogenase From Lactobacillus Bulgaricus Length = 333 | Back alignment and structure |
|
| >pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334 | Back alignment and structure |
|
| >pdb|2CUK|A Chain A, Crystal Structure Of Tt0316 Protein From Thermus Thermophilus Hb8 Length = 311 | Back alignment and structure |
|
| >pdb|2W2L|D Chain D, Crystal Structure Of The Holo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 2.5a Length = 348 | Back alignment and structure |
|
| >pdb|2W2K|A Chain A, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a. Length = 348 | Back alignment and structure |
|
| >pdb|1DXY|A Chain A, Structure Of D-2-Hydroxyisocaproate Dehydrogenase Length = 333 | Back alignment and structure |
|
| >pdb|2W2K|B Chain B, Crystal Structure Of The Apo Forms Of Rhodotorula Graminis D-Mandelate Dehydrogenase At 1.8a Length = 348 | Back alignment and structure |
|
| >pdb|2NAC|A Chain A, High Resolution Structures Of Holo And Apo Formate Dehydrogenase Length = 393 | Back alignment and structure |
|
| >pdb|2GO1|A Chain A, Nad-Dependent Formate Dehydrogenase From Pseudomonas Sp.101 Length = 401 | Back alignment and structure |
|
| >pdb|2GUG|A Chain A, Nad-dependent Formate Dehydrogenase From Pseudomonas Sp.101 In Complex With Formate Length = 401 | Back alignment and structure |
|
| >pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333 | Back alignment and structure |
|
| >pdb|3EVT|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Lactobacillus Plantarum Length = 324 | Back alignment and structure |
|
| >pdb|3FN4|A Chain A, Apo-form Of Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c-1 In Closed Conformation Length = 401 | Back alignment and structure |
|
| >pdb|2GSD|A Chain A, Nad-dependent Formate Dehydrogenase From Bacterium Moraxella Sp.c2 In Complex With Nad And Azide Length = 402 | Back alignment and structure |
|
| >pdb|2O4C|A Chain A, Crystal Structure Of D-erythronate-4-phosphate Dehydrogenase Complexed With Nad Length = 380 | Back alignment and structure |
|
| >pdb|2YQ4|A Chain A, Crystal Structure Of D-isomer Specific 2-hydroxyacid Dehydrogenase From Lactobacillus Delbrueckii Ssp. Bulgaricus Length = 343 | Back alignment and structure |
|
| >pdb|4DGS|A Chain A, The Crystals Structure Of Dehydrogenase From Rhizobium Meliloti Length = 340 | Back alignment and structure |
|
| >pdb|2FSS|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) K47e Mutant Length = 365 | Back alignment and structure |
|
| >pdb|2J6I|A Chain A, Candida Boidinii Formate Dehydrogenase (Fdh) C-Terminal Mutant Length = 364 | Back alignment and structure |
|
| >pdb|3OET|A Chain A, D-Erythronate-4-Phosphate Dehydrogenase Complexed With Nad Length = 381 | Back alignment and structure |
|
| >pdb|3HG7|A Chain A, Crystal Structure Of D-Isomer Specific 2-Hydroxyacid Dehydrogenase Family Protein From Aeromonas Salmonicida Subsp. Salmonicida A449 Length = 324 | Back alignment and structure |
|
| >pdb|1XDW|A Chain A, Nad+-Dependent (R)-2-Hydroxyglutarate Dehydrogenase From Acidaminococcus Fermentans Length = 331 | Back alignment and structure |
|
| >pdb|4HY3|A Chain A, Crystal Structure Of A Phosphoglycerate Oxidoreductase From Rhizobium Etli Length = 365 | Back alignment and structure |
|
| >pdb|3GVX|A Chain A, Crystal Structure Of Glycerate Dehydrogenase Related Protein From Thermoplasma Acidophilum Length = 290 | Back alignment and structure |
|
| >pdb|3KBO|A Chain A, 2.14 Angstrom Crystal Structure Of Putative Oxidoreductase (ycdw) From Salmonella Typhimurium In Complex With Nadp Length = 315 | Back alignment and structure |
|
| >pdb|1QP8|A Chain A, Crystal Structure Of A Putative Formate Dehydrogenase From Pyrobaculum Aerophilum Length = 303 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 656 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 0.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 1e-174 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 1e-172 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 1e-168 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 1e-162 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 1e-161 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 1e-155 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 1e-155 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 1e-144 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 1e-143 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 1e-136 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 1e-136 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 1e-135 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 1e-134 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 1e-129 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 1e-125 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 1e-120 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 1e-114 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 1e-113 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 1e-113 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 1e-107 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 1e-106 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 1e-105 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 1e-104 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 1e-101 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 2e-94 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 6e-94 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 4e-90 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 5e-82 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 5e-81 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 1e-58 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 1e-53 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 1e-17 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 4e-08 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 8e-06 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 8e-06 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 2e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-05 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 4e-05 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 5e-05 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 6e-05 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 2e-04 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 2e-04 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 2e-04 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 2e-04 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 2e-04 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 3e-04 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 7e-04 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 9e-04 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529 | Back alignment and structure |
|---|
Score = 676 bits (1747), Expect = 0.0
Identities = 186/547 (34%), Positives = 281/547 (51%), Gaps = 22/547 (4%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFE 148
P +L+++KL + +A L V + + L + + DAL+VRS T V V
Sbjct: 3 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLA 62
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
AA KLK+V RAGVG+DNVD+ AAT G LVVNAP +N +AAEH +ALL + +R + A
Sbjct: 63 AAP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAA 121
Query: 209 DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR 268
DAS++ W RS + G + GKT+ V+G G++G VA+R G V+A+DPY +A
Sbjct: 122 DASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPARAA 181
Query: 269 AVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+G+EL+S D LA ADFIS+H+P P T+ + + E AK K GV IVN ARGG++DE A
Sbjct: 182 QLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAA 241
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L A+ G V A LDVF EP DS L + V VTPHLGAST EAQ+ ++AE+V
Sbjct: 242 LADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESV 300
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
AL GE A+N V E+AP++ L +KLG LA L S+ + R
Sbjct: 301 RLALAGEFVPDAVNVGGG--VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG- 355
Query: 449 RDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPID 508
+ + +LR +G+ + + VNA A ++G+ + SP
Sbjct: 356 -ELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKA--SESPNHR-S 411
Query: 509 SIQVQLSNVDSKFAAAVSENGEISIEGKV--KFGIPHLTRVGSFGVDASLEGNLILCRQV 566
+ V+ ++ +++ G + + ++ D +G ++ V
Sbjct: 412 VVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYV 462
Query: 567 DQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEE 626
D+PG +GK+G +LG VN+ + + + +D++ D I +
Sbjct: 463 DRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYK 522
Query: 627 YTLLHVS 633
++ +S
Sbjct: 523 LEVVDLS 529
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307 | Back alignment and structure |
|---|
Score = 497 bits (1282), Expect = e-174
Identities = 129/307 (42%), Positives = 195/307 (63%), Gaps = 2/307 (0%)
Query: 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ +LV+ L E + +L+ G V + L E + +A+IVRS KVTR V
Sbjct: 2 KRMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVI 61
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
E+A KLKV+ RAGVG+DN+D++AA E G VVNAP A++ + AE + L+ S+AR ++
Sbjct: 62 ESAP-KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAF 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267
AD ++ G W + + +G+ L GKT+ ++GFG++G +VA+ A LGMN++ +DPY ++A
Sbjct: 121 ADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYPNEERA 180
Query: 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327
+ V + V + L +D +++H+PL +T + N+E MKK ++N +RG V+D
Sbjct: 181 KEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTN 240
Query: 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387
ALV+AL G +A A LDVF EEP KD L + +NV +TPH+GAST EAQE +E+AE
Sbjct: 241 ALVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEK 300
Query: 388 VVGALRG 394
VV L+G
Sbjct: 301 VVKILKG 307
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335 | Back alignment and structure |
|---|
Score = 494 bits (1274), Expect = e-172
Identities = 152/315 (48%), Positives = 203/315 (64%), Gaps = 3/315 (0%)
Query: 82 LNVQAVTPKPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGT 140
L Q++ +L+S+ L IL+ G V +LS E L ++ C+ LIVRS T
Sbjct: 18 LYFQSMANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSAT 77
Query: 141 KVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLAS 200
KVT V AA KL+VVGRAG G+DNVDL+AAT G LV+N P N+++AAE ++
Sbjct: 78 KVTADVINAA-EKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMC 136
Query: 201 MARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260
+AR + QA AS+K GKW R K++G L GKTL ++G G++G EVA R + GM I +DP
Sbjct: 137 LARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVATRMQSFGMKTIGYDP 196
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ + + GV+ + ++ DFI++H PL P+T+ + ND TFA+ KKGVR+VN AR
Sbjct: 197 IISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCAR 256
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
GG++DE AL+RAL SG A AALDVFTEEPP +D LV HENV PHLGASTKEAQ
Sbjct: 257 GGIVDEGALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRC 315
Query: 381 AIEIAEAVVGALRGE 395
EIA V ++G+
Sbjct: 316 GEEIAVQFVDMVKGK 330
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416 | Back alignment and structure |
|---|
Score = 487 bits (1256), Expect = e-168
Identities = 114/370 (30%), Positives = 179/370 (48%), Gaps = 14/370 (3%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTR 144
+ +L+ E + + + +S G + L L + IS + +RS T++T
Sbjct: 13 RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTE 72
Query: 145 SVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARN 204
+F AAN +L VG VG + V+L+AA + G V NAP +NT + AE I + + R
Sbjct: 73 EIFAAAN-RLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRR 131
Query: 205 VSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ S AG W ++ + GKTL ++G+G +GS+V A+ LGM V +D
Sbjct: 132 IFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSDKL 191
Query: 265 DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324
S D+ L T+D +SLH+P + +TSK+ + KMKKG ++N ARG +
Sbjct: 192 QYGNV--KPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSDV 249
Query: 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGV 380
D EAL + L G +A AA+DVF EP + + L ENV +TPH+G ST+EAQE +
Sbjct: 250 DLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERI 309
Query: 381 AIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVS----GGS 436
E+ +V + A+N P V ++ + + + L++
Sbjct: 310 GTEVTRKLVEYSDVGSTVGAVNFPQVQLPPRPTGTRFMHVHENRPGILNSLMNVFSHHHI 369
Query: 437 GIKSVKLIYR 446
I S L
Sbjct: 370 NIASQFLQTD 379
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333 | Back alignment and structure |
|---|
Score = 468 bits (1207), Expect = e-162
Identities = 94/331 (28%), Positives = 156/331 (47%), Gaps = 8/331 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+P + V K+ L L+ + +VE + S E L I + D +IV TK+TR V E
Sbjct: 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLEN 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A +LKV+ G DN+DL+ AT+ G V + A AE + L+ ++ R + AD
Sbjct: 62 AE-RLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120
Query: 210 ASIKAGKWLRSKYVGVS------LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263
I+ G+W + L GK + ++G G +G +ARR G+ + +
Sbjct: 121 KFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHRK 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ + + + D+ L +D + L +PL T I N+E K++ G +VN+ RG +
Sbjct: 181 VNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLE-GKYLVNIGRGAL 239
Query: 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIE 383
+DE+A+ A+ G + A DVF +EP + +TPH EAQE V
Sbjct: 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVREHELFKYEWETVLTPHYAGLALEAQEDVGFR 299
Query: 384 IAEAVVGALRGELSATAINAPMVPSEVLSEL 414
E ++ LRGE+ +N ++ + +
Sbjct: 300 AVENLLKVLRGEVPEDLVNKEVLEVRPIENV 330
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313 | Back alignment and structure |
|---|
Score = 465 bits (1198), Expect = e-161
Identities = 110/306 (35%), Positives = 176/306 (57%), Gaps = 6/306 (1%)
Query: 93 ILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN 151
L+++ + E + LR G V+ + ++S E L I D ++VRS TKVT+ V E
Sbjct: 8 ALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG- 66
Query: 152 GKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADAS 211
KLK++ RAG+G+DN+D + A + VV AP A+T +A E I L+ + AR + + A
Sbjct: 67 KKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMAL 126
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG 271
K+G + K G+ L GKT+ ++GFG++G++V A +GM V+A+D +KA +
Sbjct: 127 AKSGIF--KKIEGLELAGKTIGIVGFGRIGTKVGIIANAMGMKVLAYDILDIREKAEKIN 184
Query: 272 VELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVR 331
+ VS ++ L +D ISLH+ ++ I + F MK V IVN +R ++ +AL+
Sbjct: 185 AKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKALLD 244
Query: 332 ALDSGVVAQAALDVFTEEPPAKD--SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
+ G V A DVF EPP ++ +L++HE V VT H+GA TKEAQ+ VA + ++
Sbjct: 245 YIKKGKVYAYATDVFWNEPPKEEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLL 304
Query: 390 GALRGE 395
A++
Sbjct: 305 NAMKEL 310
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404 | Back alignment and structure |
|---|
Score = 453 bits (1168), Expect = e-155
Identities = 117/400 (29%), Positives = 187/400 (46%), Gaps = 26/400 (6%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
AA KL +G +G + VDL AA + G V NAP +NT + AE I L + R V
Sbjct: 64 INAAE-KLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVP 122
Query: 207 QADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
+A+A G + GK L ++G+G +G+++ A+ LGM V +D
Sbjct: 123 EANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIE--NKL 180
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
++ L +D +SLH+P NP+T + + + MK G ++N +RG V+D
Sbjct: 181 PLGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDI 240
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAI 382
AL AL S +A AA+DVF EP S L + +NV +TPH+G ST+EAQE + +
Sbjct: 241 PALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGL 300
Query: 383 EIAEAVVGALRGELSATAINAPMVPSE--------VLSELAPYV------VLAKKLGRLA 428
E+A ++ + +A+N P V + E P V + A++ +A
Sbjct: 301 EVAGKLIKYSDNGSTLSAVNFPEVSLPLHGGRRLMHIHENRPGVLTALNKIFAEQGVNIA 360
Query: 429 VQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
Q + + + V + + D + + ++A+ G I
Sbjct: 361 AQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAI--PGTI 398
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347 | Back alignment and structure |
|---|
Score = 450 bits (1160), Expect = e-155
Identities = 92/327 (28%), Positives = 158/327 (48%), Gaps = 12/327 (3%)
Query: 88 TPKPTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRS 145
+ P + + + + IL+ V S + + EK+ ++ ++ +TR
Sbjct: 19 SHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTRE 78
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
E L+++ R G G DN+D+++A + G V N P A+ A+ + + ++ R
Sbjct: 79 DLEKFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRA 137
Query: 206 SQADASIKAGKWLRS-------KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH 258
+ +++ G ++S + G+TL ++G G+VG VA RAK G NV+ +
Sbjct: 138 TWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFY 197
Query: 259 DPYAPADKARAVGVELVS-FDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317
DPY RA+G++ VS L +D ++LH LN + ND T +M++G +VN
Sbjct: 198 DPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVN 257
Query: 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-AKDSKLVQHENVTVTPHLGASTKEA 376
ARGG++DE+AL +AL G + AALDV EP L N+ TPH +++A
Sbjct: 258 TARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQA 317
Query: 377 QEGVAIEIAEAVVGALRGELSATAINA 403
+ E A + A+ G + + N
Sbjct: 318 SIEMREEAAREIRRAITGRIPDSLKNC 344
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351 | Back alignment and structure |
|---|
Score = 421 bits (1085), Expect = e-144
Identities = 94/339 (27%), Positives = 151/339 (44%), Gaps = 15/339 (4%)
Query: 85 QAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRSG- 139
+ T P L + G+ L S G+ V + L + I LI
Sbjct: 14 EYATKNPNFLGCVE-NALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFH 72
Query: 140 -TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALL 198
VT + A LK++ AG+G D++DLQAA G V +N V+ AE + +
Sbjct: 73 PAYVTAERIKKA-KNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRI 131
Query: 199 ASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI 256
+ RN + G+W + Y L GKT+ +G G++G + +R K G N++
Sbjct: 132 LILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIGKLLLQRLKPFGCNLL 191
Query: 257 AHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314
HD + + G + V ++ L D I ++MPL T +FN E K+KKGV
Sbjct: 192 YHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVL 251
Query: 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374
IVN ARG +++ +A+V A++SG + + DV+ +P KD N +TPH +T
Sbjct: 252 IVNNARGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTI 311
Query: 375 EAQEGVAIEIAEAVVGALRGELSATA---INAPMVPSEV 410
+AQ A + + +GE T + + +
Sbjct: 312 DAQLRYAAGTKDMLERYFKGEDFPTENYIVKDGELAPQY 350
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364 | Back alignment and structure |
|---|
Score = 420 bits (1083), Expect = e-143
Identities = 86/350 (24%), Positives = 145/350 (41%), Gaps = 22/350 (6%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRS--GTKVTRS 145
+ + ++ L + G ++ + L + I D +I +T+
Sbjct: 23 CTENKLGIANWLKDQGHELI-----TTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKE 77
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGC--LVVNAPIANTVAAAEHGIALLASMAR 203
+ A KLK+V AGVG D++DL + G V+ +N V+ AEH + + + R
Sbjct: 78 RIDKAK-KLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVR 136
Query: 204 NVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261
N A I W + + GKT+A +G G++G V R + + Y
Sbjct: 137 NFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDY 196
Query: 262 A--PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P D VG V + ++ +A AD ++++ PL+ T + N E +K KKG +VN
Sbjct: 197 QALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLVNT 256
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT-----VTPHLGAST 373
ARG + E + AL+SG + DV+ +P KD N +TPH +T
Sbjct: 257 ARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTT 316
Query: 374 KEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKK 423
+AQ A + G+ + ++ E ++ Y KK
Sbjct: 317 LDAQTRYAQGTVNILESFFTGKFDYRPQDIILLNGEYGTK--AYGKHDKK 364
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-136
Identities = 93/389 (23%), Positives = 153/389 (39%), Gaps = 50/389 (12%)
Query: 94 LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK 153
+++++ A G++ L +++ D L+VRS T+V+R+ +
Sbjct: 3 ILADENIPVVDAFFADQGSIRRLPGR--AIDRAALAEVDVLLVRSVTEVSRAALAGS--P 58
Query: 154 LKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213
++ VG +G D++DL E G +AP N ++ + L +MA
Sbjct: 59 VRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAE---------- 108
Query: 214 AGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE 273
G L +T V+G G+VG + +GLG V+ DP +AR E
Sbjct: 109 --------VRGADLAERTYGVVGAGQVGGRLVEVLRGLGWKVLVCDPPR---QAREPDGE 157
Query: 274 LVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEAL 329
VS ++ LA AD ISLH PLN T + ++ A ++ G +VN +RG V+D +AL
Sbjct: 158 FVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDNQAL 217
Query: 330 VRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389
R L+ G + ALDV+ EP + + TPH+ + E + +I +A
Sbjct: 218 RRLLEGGADLEVALDVWEGEPQ--ADPELAARCLIATPHIAGYSLEGKLRGTAQIYQAYC 275
Query: 390 GALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSAR 449
+ + +L P A L L +Y
Sbjct: 276 AWRGIAERVSLQDVLPETWLAGLQLNPGCDPAWALATLCRA-------------VYDPRS 322
Query: 450 DPDDLDTRILRAMITKGIIEPISASFINL 478
D D R++ A+F L
Sbjct: 323 D----DAAFRRSLTGDSATRR--AAFDAL 345
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352 | Back alignment and structure |
|---|
Score = 401 bits (1033), Expect = e-136
Identities = 93/348 (26%), Positives = 160/348 (45%), Gaps = 25/348 (7%)
Query: 93 ILVS----EKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALI-VRSGTKVTRS 145
I V + + + L V+ + L +++ +AL+ +R T+VTR
Sbjct: 5 IAVLDDYQDAVRKLDCFSLLQDHEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQ 64
Query: 146 VFEAANGKLKVVGRAGV----GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASM 201
+ + KLK++ + G ++DL+A T+ G +V+ + VA AE AL+ +
Sbjct: 65 LLDRLP-KLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGK-GSPVAPAELTWALVMAA 122
Query: 202 ARNVSQADASIKAGKWLRSKY----------VGVSLVGKTLAVMGFGKVGSEVARRAKGL 251
R + Q AS+K G W +S +G L G+TL + G+GK+G VA +
Sbjct: 123 QRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAF 182
Query: 252 GMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMK 310
GMNV+ ++ARA G + S D +D +S+H+ LN T I +MK
Sbjct: 183 GMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLTRMK 242
Query: 311 KGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG 370
VN +R +++E +V AL+ G AA+DVF EP + L++ EN TPH+G
Sbjct: 243 PTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIG 302
Query: 371 ASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+E+ E + ++ L+G + + N + ++ +
Sbjct: 303 YVERESYEMYFGIAFQNILDILQGNVD-SVANPTALAPALIRAEGHHH 349
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393 | Back alignment and structure |
|---|
Score = 402 bits (1034), Expect = e-135
Identities = 89/343 (25%), Positives = 145/343 (42%), Gaps = 13/343 (3%)
Query: 83 NVQAVTPKPTILVSEKLGEAGLA-ILRSFGN---VECLYDLSPEALCEKISQCDALIVRS 138
+A+ P L+ GE GL L S G+ V D ++ D +I +
Sbjct: 38 TPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQP 97
Query: 139 G--TKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIA 196
+T A LK+ AG+G D+VDLQ+A + V N+++ AEH +
Sbjct: 98 FWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVM 156
Query: 197 LLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGMN 254
++ S+ RN + + G W + V L + + G++G V RR ++
Sbjct: 157 MILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVH 216
Query: 255 VIAHDPY-APADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKG 312
+ D + P + + + + + D ++L+ PL+P T + NDET K+G
Sbjct: 217 LHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRG 276
Query: 313 VRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372
IVN ARG + D +A+ RAL+SG +A A DV+ +P KD +TPH+ +
Sbjct: 277 AYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGT 336
Query: 373 TKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA 415
T AQ A E + G +V L+
Sbjct: 337 TLTAQARYAAGTREILECFFEGRPIRDEYL--IVQGGALAGTG 377
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290 | Back alignment and structure |
|---|
Score = 393 bits (1011), Expect = e-134
Identities = 73/279 (26%), Positives = 122/279 (43%), Gaps = 15/279 (5%)
Query: 122 EALCEKISQCDALIVR----SGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGC 177
E + D + +V + + + K++ G+D++D+ E
Sbjct: 15 EIAKTVLDGFDLHWYPDYYDAEAQVIKDRYVLGK-RTKMIQAISAGVDHIDVNGIPENVV 73
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF 237
L NA A +++ AEH ALL + A+N+ + + +KAG + +S L GK L ++G+
Sbjct: 74 LCSNAG-AYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGY 130
Query: 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTT 297
G +G VA AK GM VIA+ + V S +DF+ + +PL T
Sbjct: 131 GGIGRRVAHLAKAFGMRVIAYTRSSVDQNV---DVISESPADLFRQSDFVLIAIPLTDKT 187
Query: 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKL 357
+ N A +K + IVNVAR V+ + ++ L DV+ EP ++ L
Sbjct: 188 RGMVNSRLLANARKNLTIVNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEPEITETNL 247
Query: 358 VQHENVTVTPHLGASTKEAQEGVAIEIA-EAVVGALRGE 395
N ++PH+ +AI++A E V GE
Sbjct: 248 ---RNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGE 283
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381 | Back alignment and structure |
|---|
Score = 385 bits (991), Expect = e-129
Identities = 87/366 (23%), Positives = 145/366 (39%), Gaps = 46/366 (12%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
ILV E + + G V+ E+++ DAL+VRS TKV S+
Sbjct: 6 ILVDENM-PYARELFSRLGEVK--AVPGRPIPVEELNHADALMVRSVTKVNESLLSGTP- 61
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+ VG A G D+VD + G AP N +A E+ + L +A
Sbjct: 62 -INFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------- 113
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
G SL +T+ ++G G VGS + R + LG+ + DP AR
Sbjct: 114 -----------GFSLRDRTIGIVGVGNVGSRLQTRLEALGIRTLLCDPPR---AARGDEG 159
Query: 273 ELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ + D+ + AD ++ H PL T + ++ ++K G ++N RG V+D A
Sbjct: 160 DFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGPVVDNAA 219
Query: 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388
L+ L++G LDV+ EP + L++ ++ T H+ T E + ++ EA
Sbjct: 220 LLARLNAGQPLSVVLDVWEGEPD-LNVALLEAVDI-GTSHIAGYTLEGKARGTTQVFEAY 277
Query: 389 VGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSA 448
+ E ++P+ + + L + + LV Y
Sbjct: 278 SAFIGREQRVALET--LLPAPEFGRITLHGPLDQPTLKRLAHLV------------YDVR 323
Query: 449 RDPDDL 454
RD L
Sbjct: 324 RDDAPL 329
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330 | Back alignment and structure |
|---|
Score = 373 bits (960), Expect = e-125
Identities = 92/328 (28%), Positives = 157/328 (47%), Gaps = 14/328 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
P ++++ ++ E L +L + L+ E + + A++ +V
Sbjct: 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADF 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A +L+V+G A G DN D+ A T G + P TV AE I L + R++
Sbjct: 62 LQAC-PELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLR 120
Query: 207 QADASIKAGKW--LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-P 263
ADA +++GK+ + ++ G L T+ +G G +G +A R +G G + H+ A
Sbjct: 121 AADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKALD 180
Query: 264 ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323
+ +G+ V+ + A++DFI L +PLN T + N E A ++ G +VN RG V
Sbjct: 181 TQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240
Query: 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKEA 376
+DE A++ AL+ G + A DVF E P D L+ H N TPH+G++ +
Sbjct: 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAV 300
Query: 377 QEGVAIEIAEAVVGALRGELSATAINAP 404
+ + A+ ++ AL GE A+N
Sbjct: 301 RLEIERCAAQNILQALAGERPINAVNRL 328
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-120
Identities = 112/339 (33%), Positives = 187/339 (55%), Gaps = 17/339 (5%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
KP + ++ ++ E G+ +L VE D + E L +K+ + DAL+ ++ + V
Sbjct: 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEV 61
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
FE A KL++V VG DN+D++ AT+ G V N P T A A+ ALL + AR+V
Sbjct: 62 FENAP-KLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVV 120
Query: 207 QADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ D +++G+W + ++G + GKT+ ++G G++G +A+RAKG M ++ +
Sbjct: 121 KGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYS 180
Query: 260 PYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
+ R + E + L +DF+ L +PL T + N+E MKK ++N+A
Sbjct: 181 RTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240
Query: 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEG 379
RG V+D ALV+AL G +A A LDVF EEP + +L + +NV +TPH+G+++ A+EG
Sbjct: 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEPYY-NEELFKLDNVVLTPHIGSASFGAREG 299
Query: 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLSELAPYV 418
+A +A+ ++ RGE+ T +N EV+ P
Sbjct: 300 MAELVAKNLIAFKRGEIPPTLVNR-----EVIKIRKPGF 333
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333 | Back alignment and structure |
|---|
Score = 342 bits (880), Expect = e-113
Identities = 81/304 (26%), Positives = 133/304 (43%), Gaps = 15/304 (4%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
VE L D ++V +A A+ + + VG+DN+D+
Sbjct: 29 VEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVDNIDMAK 88
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231
A E G + N P+ + A AEH A + R D + + +G + +
Sbjct: 89 AKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQV 148
Query: 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHM 291
+ V+G G +G + +G G VI +D + + G + S D AD ISLH+
Sbjct: 149 VGVVGTGHIGQVFMQIMEGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHV 207
Query: 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP 351
P P + NDE+ AKMK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E
Sbjct: 208 PDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVG 267
Query: 352 -------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398
A+ + L+ NV VTP T A + ++ + + + G+ +
Sbjct: 268 IFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNLELVEGKEAE 327
Query: 399 TAIN 402
T +
Sbjct: 328 TPVK 331
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-113
Identities = 80/307 (26%), Positives = 132/307 (42%), Gaps = 17/307 (5%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW-LRSKYVGVSLVGK 230
++G + N P + A AE + + RN+ + A ++AG + ++G L +
Sbjct: 87 MKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQ 146
Query: 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLH 290
T+ VMG G +G + KG G VIA+DPY K + VS + +D I LH
Sbjct: 147 TVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP--MKGDHPDFDYVSLEDLFKQSDVIDLH 204
Query: 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350
+P + I N+ F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 205 VPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264
Query: 351 P-------------AKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397
+L+ NV ++PH+ T+ A + + +V L +
Sbjct: 265 EDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDFLTKGET 324
Query: 398 ATAINAP 404
+T + P
Sbjct: 325 STEVTGP 331
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331 | Back alignment and structure |
|---|
Score = 327 bits (840), Expect = e-107
Identities = 67/299 (22%), Positives = 119/299 (39%), Gaps = 18/299 (6%)
Query: 119 LSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQAATEFGC 177
L+ + E + DA+I+R + + +K + G D++D + A E G
Sbjct: 34 LNTKETAEMAAGFDAVILRGNCFANKQNLDIYKKLGVKYILTRTAGTDHIDKEYAKELGF 93
Query: 178 LVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKY-VGVSLVGKTLAVMG 236
+ P + A AE + + R+ + + + + + T+ V+G
Sbjct: 94 PMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVG 153
Query: 237 FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G++G A+ G+G VI D + K VS D+ L +D I++H P
Sbjct: 154 LGRIGRVAAQIFHGMGATVIGEDVFE--IKGIEDYCTQVSLDEVLEKSDIITIHAPYIKE 211
Query: 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP------ 350
+ + KMK G +VN ARG ++D EA++ A++SG + DV E
Sbjct: 212 NGAVVTRDFLKKMKDGAILVNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGEASVFGKD 271
Query: 351 --------PAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401
P + + + V +TPHLG+ T EA + + + + I
Sbjct: 272 LEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLKDLAETGDCPNKI 330
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320 | Back alignment and structure |
|---|
Score = 324 bits (832), Expect = e-106
Identities = 95/314 (30%), Positives = 151/314 (48%), Gaps = 9/314 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP TVA AE + LL AR
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAG 120
Query: 207 QADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY-- 261
+ + I+ W + VG L KTL + GFG +G +A+RA+G M++ D +
Sbjct: 121 EGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 180
Query: 262 APADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +D+A S D L+ + F SL+ P P T FN T + +G +VN ARG
Sbjct: 181 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240
Query: 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVA 381
++D E +V AL++G +A A DVF EP + N + PH+G++ +A+E +A
Sbjct: 241 DLVDNELVVAALEAGRLAYAGFDVFAGEPNI-NEGYYDLPNTFLFPHIGSAATQAREDMA 299
Query: 382 IEIAEAVVGALRGE 395
+ + + G
Sbjct: 300 HQANDLIDALFGGA 313
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311 | Back alignment and structure |
|---|
Score = 321 bits (824), Expect = e-105
Identities = 101/309 (32%), Positives = 153/309 (49%), Gaps = 13/309 (4%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
+LV+ L L LR G ++ L L +++ LI ++ V +
Sbjct: 3 VLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDR 62
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A LKV+ VG+D+VDL+AA E G V + P T A A+ +ALL ++AR V +
Sbjct: 63 A-KGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121
Query: 210 ASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
A + G W +G+ L G TL ++G G++G VA+RA GM V+ H
Sbjct: 122 AYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHAR-----T 176
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + +S ++ L AD +SLH PL P T ++ N E MK+G ++N ARG ++D
Sbjct: 177 PKPLPYPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALVDT 236
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
EALV AL G + A LDV EP L N +TPH+G++ + +E +A E
Sbjct: 237 EALVEAL-RGHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVE 295
Query: 387 AVVGALRGE 395
++ L G
Sbjct: 296 NLLAVLEGR 304
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303 | Back alignment and structure |
|---|
Score = 316 bits (813), Expect = e-104
Identities = 63/313 (20%), Positives = 113/313 (36%), Gaps = 22/313 (7%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + DL + +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVRGGDL------------GNVEAALVSRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N A AE +ALL + + + Q +
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKM 108
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
K G + R + G+ +AV+G G++G+ V + LG V
Sbjct: 109 KRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG----PWR 163
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
S ++AL A +PLN T + + A M + VNV R V+D + ++R
Sbjct: 164 FTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRI 223
Query: 333 LDSGVVAQAALDVFT-EEPPAKDSKLVQHENVTVTPHLGAST--KEAQEGVAIEIAEAVV 389
L A DV+ AKD++ NV TP + + + +E ++
Sbjct: 224 LKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLI 283
Query: 390 GALRGELSATAIN 402
G
Sbjct: 284 TYATGGRPRNIAK 296
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330 | Back alignment and structure |
|---|
Score = 310 bits (797), Expect = e-101
Identities = 86/324 (26%), Positives = 150/324 (46%), Gaps = 9/324 (2%)
Query: 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYD-----LSPEALCEKISQCDALIVRSGTKV 142
+ V+ ++ G L + E + + L ++ L+ V
Sbjct: 6 VRLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHV 65
Query: 143 TRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMA 202
+ + +AA LKV+ VGID++ L + G V P T AE ++LL +
Sbjct: 66 DKRILDAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTC 125
Query: 203 RNVSQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
R + +A +K G W K G L T+ ++G G++G +ARR K G+ +
Sbjct: 126 RRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRIGQAIARRLKPFGVQRFLYT 185
Query: 260 PYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318
P ++A E VS + A +DFI + L P T + N + F KMK+ +N+
Sbjct: 186 GRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINI 245
Query: 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQE 378
+RG V++++ L +AL SG +A A LDV + EP + L+ +N + PH+G++T +
Sbjct: 246 SRGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRN 305
Query: 379 GVAIEIAEAVVGALRGELSATAIN 402
+++ A ++ LRGE + +
Sbjct: 306 TMSLLAANNLLAGLRGEPMPSELK 329
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345 | Back alignment and structure |
|---|
Score = 294 bits (755), Expect = 2e-94
Identities = 78/320 (24%), Positives = 150/320 (46%), Gaps = 7/320 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRS 145
P + + A A LR ++E + L+P + + + L V + +T
Sbjct: 27 PIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAE 86
Query: 146 VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205
V LK + VG D++D+ AA G V++ P + A AE + L+ + R
Sbjct: 87 VIRKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRG 146
Query: 206 SQADASIKAGKWLRSK---YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262
+AD +++G W +G+ L G+ L + G G++G +A RA+G G+ + H+
Sbjct: 147 YEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR 206
Query: 263 PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322
+ + + D L +D + P P + + AK+ +G ++N++RG
Sbjct: 207 LSHALEEGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINISRGD 266
Query: 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382
+I+++AL+ AL S + A LDVF EP D + +N+ +TPH+G++T E ++ +
Sbjct: 267 LINDDALIEALRSKHLFAAGLDVFANEPAI-DPRYRSLDNIFLTPHIGSATHETRDAMGW 325
Query: 383 EIAEAVVGALRGELSATAIN 402
+ + + + ++ I+
Sbjct: 326 LLIQGIEALNQSDVPDNLIS 345
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348 | Back alignment and structure |
|---|
Score = 293 bits (751), Expect = 6e-94
Identities = 91/345 (26%), Positives = 150/345 (43%), Gaps = 26/345 (7%)
Query: 89 PKPTILVS---EKLGEAGLAILRSFGNVECLYDLSPEALCE-----KISQCDALIVRSGT 140
P+P +L+ + + + + V + + + + +A+I +
Sbjct: 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVE 61
Query: 141 KVTRS------VFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHG 194
T S + LKV AG G D +DL A E G N+ A A ++
Sbjct: 62 NGTESYPWNADLISHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLA 121
Query: 195 IALLASMARNVSQADASIKAGKW-------LRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247
+ L+ S+ R S ++ + + G L + G L +G G + E+AR+
Sbjct: 122 LYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNPRGHVLGAVGLGAIQKEIARK 181
Query: 248 A-KGLGMNVIAHDPY-APADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDE 304
A GLGM ++ +D A A+ +A+G E V S ++ +D +S+ +P T + ++
Sbjct: 182 AVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT 364
FA MK G RIVN ARG VI ++AL+ AL SG + A LDV EP +L++ ++VT
Sbjct: 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEPQV-SKELIEMKHVT 300
Query: 365 VTPHLGASTKEAQEGVAIEIAEAVVGALR-GELSATAINAPMVPS 408
+T H+G E + L G+ T PS
Sbjct: 301 LTTHIGGVAIETFHEFERLTMTNIDRFLLQGKPLLTPAGKVFAPS 345
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324 | Back alignment and structure |
|---|
Score = 282 bits (723), Expect = 4e-90
Identities = 76/303 (25%), Positives = 133/303 (43%), Gaps = 3/303 (0%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+L+++ L L++ + + + Q + + + + + N
Sbjct: 4 VLMAQATKPEQLQQLQTTY-PDWTFKDAAAVTAADYDQIEVMYG-NHPLLKTILARPTN- 60
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK V G+D + L+A G +V N + A +E +A + S+ R A +
Sbjct: 61 QLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQ 120
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272
+ + +L G+ L + G G++G +A +A LGM+VI + V
Sbjct: 121 RGARQWALPMTTSTLTGQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTGHPADHFHETV 180
Query: 273 ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRA 332
+ ALATA+FI +PL PTT +F+ E F + K+ ++N+ RG +D AL+ A
Sbjct: 181 AFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDTTALMTA 240
Query: 333 LDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGAL 392
LD ++ AALDV EP D L Q ++V +TPH+ + V A +
Sbjct: 241 LDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFV 300
Query: 393 RGE 395
+
Sbjct: 301 KDG 303
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340 | Back alignment and structure |
|---|
Score = 261 bits (669), Expect = 5e-82
Identities = 85/316 (26%), Positives = 140/316 (44%), Gaps = 8/316 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD-LSPEALCEKISQCDALIVRSGTKVTRSVFE 148
KP +L+ E + + L+ +V LY AL + A+ G ++ E
Sbjct: 30 KPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWME 89
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L ++ GVG D VDL A V P A+ GIAL+ ++ R V
Sbjct: 90 KLP-SLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDG 148
Query: 209 DASIKAGKWLRSKY--VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266
D ++ G+W + +G S GK + V+G G++G +A RA+ GM+V + +
Sbjct: 149 DRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNR---STL 205
Query: 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326
+ + S +D +++ + + T I + + +VNVARG V+DE
Sbjct: 206 SGVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARGNVVDE 265
Query: 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAE 386
+AL+ AL SG +A A LDVF EP S+ N + PH G++T E + + +
Sbjct: 266 DALIEALKSGTIAGAGLDVFVNEPAI-RSEFHTTPNTVLMPHQGSATVETRMAMGKLVLA 324
Query: 387 AVVGALRGELSATAIN 402
+ GE + +N
Sbjct: 325 NLAAHFAGEKAPNTVN 340
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333 | Back alignment and structure |
|---|
Score = 258 bits (662), Expect = 5e-81
Identities = 75/310 (24%), Positives = 128/310 (41%), Gaps = 8/310 (2%)
Query: 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSV 146
+L+ + L + + + L + A++ S +
Sbjct: 22 EAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAEL 81
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+A KL++V VG+D VDL E G V N P T A+ I L+ ++ R +
Sbjct: 82 IDALP-KLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRIC 140
Query: 207 QADASIKAGKWLRSKY-VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265
+ D ++ G W + + GK + ++G G++G VA RA+ + +
Sbjct: 141 ECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSKKPN 200
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
S + + +D + + PL P T+ I N E + ++N+ RG +D
Sbjct: 201 TNYT---YYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPHVD 257
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E LV AL G + A LDVF EP KL ENV + PH+G+ T E ++ +A +
Sbjct: 258 EPELVSALVEGRLGGAGLDVFEREPEV-PEKLFGLENVVLLPHVGSGTVETRKVMADLVV 316
Query: 386 EAVVGALRGE 395
+ G+
Sbjct: 317 GNLEAHFSGK 326
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324 | Back alignment and structure |
|---|
Score = 199 bits (507), Expect = 1e-58
Identities = 71/288 (24%), Positives = 115/288 (39%), Gaps = 12/288 (4%)
Query: 90 KPTILVSEKLGEAGLAILRS--FGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF 147
+ T+L+ + +L++ ++ L + + I + L+ + +
Sbjct: 5 QRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAE--PARAKPLL 62
Query: 148 EAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ 207
AN KL G+D + L A + N +E+ L S+ R +
Sbjct: 63 AKAN-KLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--HDPYAPAD 265
K W Y L G+TL ++G G +G +A K GM V+ A
Sbjct: 121 YREQQKQRLWQSHPYQ--GLKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSGRERAG 178
Query: 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325
+ + + ++ LA AD I +P T +F F K G + NV RG I+
Sbjct: 179 FDQVYQLP--ALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGAST 373
E L+ AL +G + A LDVF +EP DS L N+ +TPH A +
Sbjct: 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYS 284
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A Length = 315 | Back alignment and structure |
|---|
Score = 185 bits (471), Expect = 1e-53
Identities = 60/255 (23%), Positives = 102/255 (40%), Gaps = 14/255 (5%)
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAA------AEHGIALLASMA 202
A +LK V G G+D + + L + P+ E+ ++ +
Sbjct: 55 LAGRRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWF 114
Query: 203 RNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDP 260
R A W + ++ +MG G +G++VA + G + +
Sbjct: 115 RRFDDYQALKNQALWKPLPEY--TREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR 172
Query: 261 YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320
+ VG E L + +P T I N E ++ G ++N+AR
Sbjct: 173 KSWPGVESYVGRE--ELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVLNLAR 230
Query: 321 GGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGV 380
G + E L+ ALDSG + A LDVF++EP ++S L +H V +TPH+ A T+
Sbjct: 231 GVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEA 288
Query: 381 AIEIAEAVVGALRGE 395
I+ + +GE
Sbjct: 289 IDYISRTITQLEKGE 303
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} Length = 293 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 1e-17
Identities = 40/264 (15%), Positives = 81/264 (30%), Gaps = 28/264 (10%)
Query: 95 VSEKLGEAGLAILRSFGNVECLYDLSPEALC----EKISQCDALIVRSGTKVTRSVFEAA 150
+ KL A + G + + DA+++
Sbjct: 20 IIRKLSTFD-AKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPI-------SGTNE 71
Query: 151 NGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAPIANTVAAAEHGIALLASMARNVSQA 208
GK+ + + ++ T C+V + + L+ M R+
Sbjct: 72 AGKVDTIFSNESIVLTEEMIEKTPNHCVVYSGISNTYLNQCMKKTNRTLVKLMERDDIAI 131
Query: 209 DASIKAGKW---LRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD-PYAPA 264
SI + + ++ ++ G +AV+G G+VG VAR+ LG V
Sbjct: 132 YNSIPTAEGTIMMAIQHTDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLL 191
Query: 265 DKARAVGVELVSFD---QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321
+ +G+E Q L D +P + + A+M ++++A
Sbjct: 192 ARIAEMGMEPFHISKAAQELRDVDVCINTIP-----ALVVTANVLAEMPSHTFVIDLASK 246
Query: 322 GVIDEEALVRALDSGVVAQAALDV 345
+ G+ A +
Sbjct: 247 PGGTDFRYAEKR--GIKALLVPGL 268
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} Length = 300 | Back alignment and structure |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 41/229 (17%), Positives = 76/229 (33%), Gaps = 27/229 (11%)
Query: 126 EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVV--NAP 183
Q D++I+ G + V + D T C++ +
Sbjct: 56 IPFQQIDSIILPV-------SATTGEGVVSTVFSNEEVVLKQDHLDRTPAHCVIFSGISN 108
Query: 184 IANTVAAAEHGIALLASMAR-NVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKV 240
AA+ L+ R +++ ++ + ++ ++ G +AV+G G+
Sbjct: 109 AYLENIAAQAKRKLVKLFERDDIAIYNSIPTVEGTIMLAIQHTDYTIHGSQVAVLGLGRT 168
Query: 241 GSEVARRAKGLGMNV--IAHDPY--APADKARAVGVELVSFDQALATADFISLHMPLNPT 296
G +AR LG NV A A + V + + D +N
Sbjct: 169 GMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDIC-----INTI 223
Query: 297 TSKIFNDETFAKMKKGVRIVNVA--RGGVIDEEALVRALDSGVVAQAAL 343
S I N + M I+++A GG + A + G+ A A
Sbjct: 224 PSMILNQTVLSSMTPKTLILDLASRPGGTDFKYAEKQ----GIKALLAP 268
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* Length = 435 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 8e-06
Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
+ GK + V G+G+VG K +G V DP A +A G LV ++ +
Sbjct: 216 MMFGGKQVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPIC-ALQACMDGFRLVKLNEVIR 274
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D I+ T + E +MK + N+
Sbjct: 275 QVDIVIT-------CTGNKNVVTREHLDRMKNSCIVCNM 306
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* Length = 436 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 8e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GKT V G+G VG A +G G V+ DP A +A G +++ + +
Sbjct: 207 VMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPIN-ALQAAMEGYQVLLVEDVVE 265
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
A F++ TT I E F +M+ + N+
Sbjct: 266 EAHIFVT-------TTGNDDIITSEHFPRMRDDAIVCNI 297
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 2e-05
Identities = 26/186 (13%), Positives = 59/186 (31%), Gaps = 14/186 (7%)
Query: 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPY-APADKARAVGVELVSFDQALATADF 286
KT+A++G GK+G+ + R+ ++ A + D+ + +G+ L D + AD
Sbjct: 11 PKTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADV 70
Query: 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAA---- 342
+ L +P + ++ +++ G ++ + ++
Sbjct: 71 VVLALP--DNIIEKVAEDIVPRVRPGTIVLIL--DAAAPYAGVMPERADITYFIGHPCHP 126
Query: 343 ---LDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQ-EGVAIEIAEAVVGALRGELSA 398
D + + + G A + + V R
Sbjct: 127 PLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMWSPVTRTHRVTTEQ 186
Query: 399 TAINAP 404
AI P
Sbjct: 187 LAILEP 192
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.4 bits (109), Expect = 3e-05
Identities = 57/387 (14%), Positives = 104/387 (26%), Gaps = 112/387 (28%)
Query: 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIA 385
E+A V D V + ++E D ++ + V+ T L + QE + +
Sbjct: 26 EDAFVDNFDCKDVQDMPKSILSKE--EIDHIIMSKDAVSGTLRLFWTLLSKQEEM---VQ 80
Query: 386 EAVVGALRGELS--ATAI----NAPMVPSEVLSE-----------LAPYVV--------L 420
+ V LR + I P + + + E A Y V L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 421 AKKLGRLAVQ---LVSG--GSGIKSVKLIYRSARDPDDLDTRILRAM------ITKGIIE 469
+ L L L+ G GSG K+ + ++ M +
Sbjct: 141 RQALLELRPAKNVLIDGVLGSG-KTW-VALDVCL-----SYKVQCKMDFKIFWLNLKNCN 193
Query: 470 PISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLS-------------- 515
L + R S+ + I SIQ +L
Sbjct: 194 SPETVLEMLQKLLYQIDPNW----TSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV 249
Query: 516 --NV-DSKFAAA---------VSENGEI--SIEGKVKFGIPHLTRVGSFGVDASLE--GN 559
NV ++K A + ++ + I + D
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 560 LILCRQVDQP-----------GMIG---KVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG 605
+ CR D P +I + G ++ +VN + I+
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTT-------IIESS 362
Query: 606 VDE-EPN--QDSLKEIG------KVPA 623
++ EP + + +P
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPT 389
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.6 bits (107), Expect = 5e-05
Identities = 60/418 (14%), Positives = 110/418 (26%), Gaps = 138/418 (33%)
Query: 12 KPIFTTRSKSSNSSKSSLLSFLHNTKPKPISLKFSSHNSNYTTPPSFTISNSLQTALETS 71
K + TTR K + FL ISL S + T L
Sbjct: 267 KILLTTRFK-------QVTDFLSAATTTHISLDHHS--------MTLTPDEVKS--LLLK 309
Query: 72 ELHVSKFQDDLNVQAVTPKPTI--LVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKIS 129
L DL + +T P +++E + + GLA ++ +V C + L I
Sbjct: 310 YLDCRP--QDLPREVLTTNPRRLSIIAESIRD-GLATWDNWKHVNC------DKLTTIIE 360
Query: 130 QC-DALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTV 188
+ L R +F+ +A I +
Sbjct: 361 SSLNVL----EPAEYRKMFD-------------------------RLSVFPPSAHIPTIL 391
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
++L+ W V +V L S V ++
Sbjct: 392 ------LSLI------------------WFDVIKSDVMVVVNKLHKY------SLVEKQP 421
Query: 249 KGLGMNVIAHDPY----APADKARAVGVELVSFDQALATAD---------------FISL 289
K +++ Y + A+ +V T D I
Sbjct: 422 KESTISI--PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 290 HM-PLNPTT-----SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343
H+ + +F D F + K +R + A ++ L
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQK--IRHDSTAWNASGSILNTLQQLKF------YK 531
Query: 344 DVFTEEPPAKDSK-------LVQHE-NVTVTPH-----LGASTKEAQEGVAIEIAEAV 388
+ P + L + E N+ + + + ++ E + E + V
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED--EAIFEEAHKQV 587
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} Length = 464 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 4e-05
Identities = 30/99 (30%), Positives = 43/99 (43%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAH--DPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ G G V DP A +A G E+V+ D A +
Sbjct: 243 VMMAGKVAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPIC-ALQAAMDGFEVVTLDDAAS 301
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
TAD ++ TT + + KMK + N+
Sbjct: 302 TADIVVT-------TTGNKDVITIDHMRKMKDMCIVGNI 333
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 Length = 364 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 211 SIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--AR 268
+KA + + SL G ++V G G V + ++ G ++ D A
Sbjct: 157 GMKA--AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVA 214
Query: 269 AVGVELVSFDQALAT 283
G + V+ +
Sbjct: 215 EEGADAVAPNAIYGV 229
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* Length = 355 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 6e-05
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALAT 283
SL G T+ V G G VG +A A G ++ D A A+G V+ + L+T
Sbjct: 172 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLST 230
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* Length = 494 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 27/99 (27%), Positives = 42/99 (42%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
V + GK V G+G VG A+ +GLG V DP A +A G +V+ + A
Sbjct: 273 VMIAGKIAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPIC-ALQAAMEGYRVVTMEYAAD 331
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
AD F++ T + N + M+ + N+
Sbjct: 332 KADIFVT-------ATGNYHVINHDHMKAMRHNAIVCNI 363
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} Length = 419 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L G + V G G+VG+ VA A+ LGM V+A
Sbjct: 210 KRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVA 246
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A Length = 440 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
+ +G+ + G +A+ GFG VG+ AR G V+A
Sbjct: 227 EKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVA 263
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 Length = 421 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K + + GKT+A+ G G VG A + +G VIA
Sbjct: 202 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A Length = 424 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 12/37 (32%), Positives = 17/37 (45%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ L + + GFG GS +A+ G VI
Sbjct: 213 KKKGIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIG 249
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} Length = 421 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
K G+ + +AV GFG VG+ + + G V A
Sbjct: 204 KRFGIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCA 240
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* Length = 501 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 12/46 (26%), Positives = 15/46 (32%)
Query: 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257
I ++ + KT V GFG VG R G I
Sbjct: 227 INEASYMSILGMTPGFGDKTFVVQGFGNVGLHSMRYLHRFGAKCIT 272
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 Length = 479 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 9e-04
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 13/99 (13%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI--AHDPYAPADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V DP A +A G +V+ D+ +
Sbjct: 253 FLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPI-CAIQAVMEGFNVVTLDEIVD 311
Query: 283 TAD-FISLHMPLNPTT--SKIFNDETFAKMKKGVRIVNV 318
D FI+ T + E KMK + N+
Sbjct: 312 KGDFFIT-------CTGNVDVIKLEHLLKMKNNAVVGNI 343
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 656 | |||
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 100.0 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 100.0 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 100.0 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 100.0 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 100.0 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 100.0 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 100.0 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 100.0 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 100.0 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 100.0 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 100.0 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 100.0 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 100.0 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 100.0 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 100.0 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 100.0 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 100.0 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 100.0 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 100.0 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 100.0 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 100.0 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 100.0 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 100.0 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 100.0 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 100.0 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 100.0 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 100.0 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 100.0 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 100.0 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 100.0 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 100.0 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 100.0 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 100.0 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 100.0 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 100.0 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 100.0 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 99.95 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 99.93 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 99.93 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 99.89 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 99.77 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 99.77 | |
| 1gtm_A | 419 | Glutamate dehydrogenase; oxidoreductase, NAD, NADP | 99.76 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 99.74 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 99.7 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.69 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 99.65 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.64 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 99.63 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 99.57 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.52 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.38 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.35 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 99.24 | |
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 99.22 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 99.21 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 99.2 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.19 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 99.19 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 99.17 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 99.16 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 99.15 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 99.15 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.14 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 99.14 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 99.14 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 99.14 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 99.13 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 99.11 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.1 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 99.06 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 99.06 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 99.06 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 99.01 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 99.0 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 98.89 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.89 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 98.89 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 98.87 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.85 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 98.84 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 98.83 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 98.83 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 98.83 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 98.83 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 98.82 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 98.81 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 98.3 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.79 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 98.78 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 98.76 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 98.71 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 98.7 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 98.67 | |
| 2iaf_A | 151 | Hypothetical protein SDHL; MCSG, PSI2, MAD, struct | 98.67 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 98.66 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 98.63 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 98.63 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 98.61 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 98.6 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 98.59 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 98.52 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 98.52 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 98.52 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.52 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 98.46 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 98.46 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 98.45 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 98.4 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 98.38 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 98.35 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 98.33 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 98.32 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 98.31 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 98.31 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 98.27 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 98.27 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 98.26 | |
| 1y7p_A | 223 | Hypothetical protein AF1403; structural genomics, | 98.22 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 98.21 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 98.19 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 98.19 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 98.17 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 98.16 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 98.16 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 98.13 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 98.13 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 98.13 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 98.1 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 98.1 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 98.09 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 98.04 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 98.04 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 98.03 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.01 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 97.99 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 97.98 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 97.98 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 97.97 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 97.96 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 97.95 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 97.95 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 97.94 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 97.94 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 97.94 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 97.94 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 97.93 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 97.91 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 97.9 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 97.9 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.89 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 97.89 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 97.88 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 97.88 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 97.87 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 97.85 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 97.85 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 97.81 | |
| 2ko1_A | 88 | CTR148A, GTP pyrophosphokinase; homodimer, alpha+b | 97.79 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.77 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 97.74 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 97.71 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 97.7 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 97.68 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 97.67 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 97.65 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 97.61 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 97.61 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 97.49 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.47 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 97.42 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.41 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.4 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 97.37 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 97.36 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 97.35 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.33 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.33 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.3 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 97.3 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.3 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.22 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 97.21 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.17 | |
| 2f1f_A | 164 | Acetolactate synthase isozyme III small subunit; f | 97.16 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.15 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 97.15 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 97.14 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 97.11 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.1 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 97.09 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.05 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.04 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.04 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.03 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 97.03 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.02 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.02 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 96.97 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 96.97 | |
| 2i6u_A | 307 | Otcase, ornithine carbamoyltransferase; X-RAY crys | 96.95 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 96.95 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.94 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 96.94 | |
| 2pc6_A | 165 | Probable acetolactate synthase isozyme III (small; | 96.93 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 96.91 | |
| 1pg5_A | 299 | Aspartate carbamoyltransferase; 2.60A {Sulfolobus | 96.91 | |
| 2ef0_A | 301 | Ornithine carbamoyltransferase; TTHA1199, thermus | 96.86 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 96.86 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 96.84 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 96.84 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 96.84 | |
| 1zpv_A | 91 | ACT domain protein; structural genomics, PSI, prot | 96.83 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.82 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 96.81 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 96.75 | |
| 1vlv_A | 325 | Otcase, ornithine carbamoyltransferase; TM1097, st | 96.72 | |
| 2a9f_A | 398 | Putative malic enzyme ((S)-malate:NAD+ oxidoreduct | 96.71 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 96.71 | |
| 1pvv_A | 315 | Otcase, ornithine carbamoyltransferase; dodecamer; | 96.69 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 96.66 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 96.66 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 96.65 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 96.61 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 96.57 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 96.57 | |
| 3r7f_A | 304 | Aspartate carbamoyltransferase; aspartate transcar | 96.56 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 96.56 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 96.55 | |
| 1dxh_A | 335 | Ornithine carbamoyltransferase; transcarbamylase; | 96.55 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 96.54 | |
| 3q2o_A | 389 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 96.51 | |
| 1duv_G | 333 | Octase-1, ornithine transcarbamoylase; enzyme-inhi | 96.5 | |
| 2fgc_A | 193 | Acetolactate synthase, small subunit; regulatory s | 96.5 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 96.49 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 96.47 | |
| 4amu_A | 365 | Ornithine carbamoyltransferase, catabolic; ornithi | 96.47 | |
| 1oth_A | 321 | Protein (ornithine transcarbamoylase); transferase | 96.45 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.45 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 96.44 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.44 | |
| 1ml4_A | 308 | Aspartate transcarbamoylase; beta pleated sheet, p | 96.44 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 96.44 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.43 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 96.4 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 96.36 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.34 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 96.33 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 96.33 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 96.32 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 96.32 | |
| 4f2g_A | 309 | Otcase 1, ornithine carbamoyltransferase 1; struct | 96.32 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.29 | |
| 4a8t_A | 339 | Putrescine carbamoyltransferase; trabnsferase PALO | 96.25 | |
| 3csu_A | 310 | Protein (aspartate carbamoyltransferase); transfer | 96.24 | |
| 4fcc_A | 450 | Glutamate dehydrogenase; protein complex, rossmann | 96.2 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 96.16 | |
| 2w37_A | 359 | Ornithine carbamoyltransferase, catabolic; transca | 96.16 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.15 | |
| 2dvm_A | 439 | Malic enzyme, 439AA long hypothetical malate oxido | 96.14 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 96.14 | |
| 1b7g_O | 340 | Protein (glyceraldehyde 3-phosphate dehydrogenase; | 96.13 | |
| 1js1_X | 324 | Transcarbamylase; alpha/beta topology, two domains | 96.12 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 96.12 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 96.09 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 96.09 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 96.09 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 96.08 | |
| 4ep1_A | 340 | Otcase, ornithine carbamoyltransferase; structural | 96.07 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 96.07 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 96.05 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.05 | |
| 4a8p_A | 355 | Putrescine carbamoyltransferase; ornithine agmatin | 96.02 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 96.01 | |
| 3grf_A | 328 | Ornithine carbamoyltransferase; ornithine transcar | 96.01 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 95.99 | |
| 3tpf_A | 307 | Otcase, ornithine carbamoyltransferase; structural | 95.95 | |
| 3gd5_A | 323 | Otcase, ornithine carbamoyltransferase; structural | 95.92 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.92 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 95.91 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 95.86 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 95.84 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 95.84 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 95.83 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 95.82 | |
| 3d6n_B | 291 | Aspartate carbamoyltransferase; reactor, chamber, | 95.79 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 95.79 | |
| 3aog_A | 440 | Glutamate dehydrogenase; NAD(H), oxidoreducta; HET | 95.73 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 95.73 | |
| 1xyg_A | 359 | Putative N-acetyl-gamma-glutamyl-phosphate reduct; | 95.73 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 95.71 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 95.7 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 95.67 | |
| 3sds_A | 353 | Ornithine carbamoyltransferase, mitochondrial; str | 95.67 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 95.66 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 95.64 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 95.63 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 95.63 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.61 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 95.59 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 95.59 | |
| 3orq_A | 377 | N5-carboxyaminoimidazole ribonucleotide synthetas; | 95.58 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 95.56 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.56 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 95.54 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 95.52 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.52 | |
| 2tmg_A | 415 | Protein (glutamate dehydrogenase); metabolic role, | 95.52 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 95.47 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 95.47 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.46 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 95.46 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 95.42 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 95.41 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 95.41 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 95.39 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 95.39 | |
| 3k92_A | 424 | NAD-GDH, NAD-specific glutamate dehydrogenase; ROC | 95.37 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 95.36 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 95.36 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 95.34 | |
| 3lou_A | 292 | Formyltetrahydrofolate deformylase; structural gen | 95.32 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 95.28 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 95.27 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 95.24 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 95.23 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 95.22 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.21 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 95.19 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 95.17 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 95.15 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 95.13 | |
| 3obi_A | 288 | Formyltetrahydrofolate deformylase; structural gen | 95.13 | |
| 4ekn_B | 306 | Aspartate carbamoyltransferase; atcase, aspartate | 95.12 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.12 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 95.09 | |
| 2ozp_A | 345 | N-acetyl-gamma-glutamyl-phosphate reductase; amino | 95.06 | |
| 1ys4_A | 354 | Aspartate-semialdehyde dehydrogenase; oxidoreducta | 95.03 | |
| 4h31_A | 358 | Otcase, ornithine carbamoyltransferase; structural | 95.0 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 94.99 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.97 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 94.93 | |
| 2nqt_A | 352 | N-acetyl-gamma-glutamyl-phosphate reductase; apopr | 94.92 | |
| 1zq6_A | 359 | Otcase, ornithine carbamoyltransferase; alpha/beta | 94.91 | |
| 2yfk_A | 418 | Aspartate/ornithine carbamoyltransferase; transcar | 94.9 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 94.89 | |
| 1zud_1 | 251 | Adenylyltransferase THIF; thiamin, thiazole, prote | 94.89 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 94.88 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 94.86 | |
| 3n0v_A | 286 | Formyltetrahydrofolate deformylase; formyl transfe | 94.84 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.84 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 94.84 | |
| 2dt5_A | 211 | AT-rich DNA-binding protein; REX, NADH, NAD, rossm | 94.82 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 94.8 | |
| 1pjq_A | 457 | CYSG, siroheme synthase; rossman fold, nucleotide | 94.8 | |
| 2yfq_A | 421 | Padgh, NAD-GDH, NAD-specific glutamate dehydrogena | 94.79 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 94.79 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 94.79 | |
| 2cf5_A | 357 | Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign | 94.78 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 94.78 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.78 | |
| 3rui_A | 340 | Ubiquitin-like modifier-activating enzyme ATG7; au | 94.77 | |
| 3o1l_A | 302 | Formyltetrahydrofolate deformylase; structural gen | 94.76 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 94.76 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 94.71 | |
| 1v9l_A | 421 | Glutamate dehydrogenase; protein-NAD complex, oxid | 94.69 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 94.69 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.67 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 94.65 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.65 | |
| 3q98_A | 399 | Transcarbamylase; rossmann fold, transferase; 2.00 | 94.64 | |
| 1kyq_A | 274 | Met8P, siroheme biosynthesis protein Met8; homodim | 94.62 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 94.55 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 94.53 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 94.53 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 94.51 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 94.46 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 94.46 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.45 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 94.41 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 94.4 | |
| 3nrb_A | 287 | Formyltetrahydrofolate deformylase; N-terminal ACT | 94.36 | |
| 3cps_A | 354 | Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, g | 94.34 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 94.32 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 94.31 | |
| 4e4t_A | 419 | Phosphoribosylaminoimidazole carboxylase, ATPase; | 94.29 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 94.28 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 94.22 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 94.22 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 94.2 | |
| 2bma_A | 470 | Glutamate dehydrogenase (NADP+); malaria, drug des | 94.18 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 94.17 | |
| 1u8f_O | 335 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l | 94.15 | |
| 3keo_A | 212 | Redox-sensing transcriptional repressor REX; DNA b | 94.15 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 94.15 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.12 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 94.11 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 94.09 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 94.05 | |
| 1bgv_A | 449 | Glutamate dehydrogenase; oxidoreductase; HET: GLU; | 94.04 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.04 | |
| 3aoe_E | 419 | Glutamate dehydrogenase; rossmann fold, NADH, oxid | 94.0 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 93.98 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 93.93 | |
| 3e5r_O | 337 | PP38, glyceraldehyde-3-phosphate dehydrogenase, cy | 93.84 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 93.83 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 93.74 | |
| 2we8_A | 386 | Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc | 93.71 | |
| 2yyy_A | 343 | Glyceraldehyde-3-phosphate dehydrogenase; glyceral | 93.71 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 93.7 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 93.7 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 93.69 | |
| 3r3j_A | 456 | Glutamate dehydrogenase; rossman fold, oxidoreduct | 93.68 | |
| 3h9e_O | 346 | Glyceraldehyde-3-phosphate dehydrogenase, testis-; | 93.66 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 93.62 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 93.58 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.56 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 93.54 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 93.47 | |
| 4hv4_A | 494 | UDP-N-acetylmuramate--L-alanine ligase; MURC, yers | 93.46 | |
| 4gsl_A | 615 | Ubiquitin-like modifier-activating enzyme ATG7; ub | 93.45 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 93.45 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.41 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 93.39 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.38 | |
| 2ejw_A | 332 | HDH, homoserine dehydrogenase; NAD-dependent, oxid | 93.34 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.32 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 93.3 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 93.29 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 93.23 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 93.19 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.18 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 93.06 | |
| 3vh1_A | 598 | Ubiquitin-like modifier-activating enzyme ATG7; au | 93.01 | |
| 2ep5_A | 350 | 350AA long hypothetical aspartate-semialdehyde deh | 92.96 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.86 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 92.84 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 92.8 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 92.75 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 92.75 | |
| 1hdg_O | 332 | Holo-D-glyceraldehyde-3-phosphate dehydrogenase; o | 92.72 | |
| 3hhp_A | 312 | Malate dehydrogenase; MDH, citric acid cycle, TCA | 92.71 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 92.69 | |
| 3hn7_A | 524 | UDP-N-acetylmuramate-L-alanine ligase; ATP-binding | 92.65 | |
| 2f06_A | 144 | Conserved hypothetical protein; structural genomic | 92.56 | |
| 2x5o_A | 439 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; A | 92.52 | |
| 2nyi_A | 195 | Unknown protein; protein structure initiative, PSI | 92.48 | |
| 3kzn_A | 359 | Aotcase, N-acetylornithine carbamoyltransferase; t | 92.47 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 92.46 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 92.43 | |
| 1u8s_A | 192 | Glycine cleavage system transcriptional repressor, | 92.41 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 92.38 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 92.36 | |
| 3mw9_A | 501 | GDH 1, glutamate dehydrogenase 1; allostery, inhib | 92.34 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 92.31 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 92.19 | |
| 2x0j_A | 294 | Malate dehydrogenase; oxidoreductase, hyperthermop | 92.15 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 92.11 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.08 | |
| 3pi7_A | 349 | NADH oxidoreductase; groes-like fold, NAD(P)-bindi | 92.05 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 91.98 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 91.89 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 91.84 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 91.8 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 91.8 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 91.77 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.76 | |
| 3c8m_A | 331 | Homoserine dehydrogenase; structural genomics, APC | 91.75 | |
| 3nv9_A | 487 | Malic enzyme; rossmann fold, oxidoreductase; 2.25A | 91.75 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 91.74 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 91.73 | |
| 3on5_A | 362 | BH1974 protein; structural genomics, joint center | 91.73 | |
| 3cmc_O | 334 | GAPDH, glyceraldehyde-3-phosphate dehydrogenase; m | 91.72 | |
| 3nkl_A | 141 | UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fo | 91.67 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 91.6 | |
| 4id9_A | 347 | Short-chain dehydrogenase/reductase; putative dehy | 91.56 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 91.54 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 91.47 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 91.41 | |
| 1gad_O | 330 | D-glyceraldehyde-3-phosphate dehydrogenase; oxidor | 91.4 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 91.37 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.35 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 91.34 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 91.3 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 91.13 | |
| 1jvb_A | 347 | NAD(H)-dependent alcohol dehydrogenase; archaeon, | 91.1 | |
| 2ph5_A | 480 | Homospermidine synthase; alpha-beta protein, struc | 91.09 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 90.95 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 90.94 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 90.87 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 90.81 | |
| 3k5i_A | 403 | Phosphoribosyl-aminoimidazole carboxylase; purine | 90.68 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 90.67 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 90.67 | |
| 3b1j_A | 339 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); | 90.66 | |
| 3ruf_A | 351 | WBGU; rossmann fold, UDP-hexose 4-epimerase, isome | 90.65 | |
| 1p3d_A | 475 | UDP-N-acetylmuramate--alanine ligase; alpha/beta p | 90.64 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 90.57 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 90.56 |
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-100 Score=860.64 Aligned_cols=526 Identities=35% Similarity=0.534 Sum_probs=496.9
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 88 TPKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
|.++|||+++++.+..++.|++..++++....+++++.+.++++|++++++.+++++++++++ |+||||+++|+|+|||
T Consensus 2 m~~~~vl~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 80 (529)
T 1ygy_A 2 VSLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNV 80 (529)
T ss_dssp -CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTB
T ss_pred CCCcEEEEeCCCCHHHHHHHhcCceEEEcCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCcEEEECCcCcCcc
Confidence 457899999999999888887767777766678899999999999999998889999999987 5999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 247 (656)
|+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|+||||||+|+||+++|++
T Consensus 81 d~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIIG~G~IG~~vA~~ 160 (529)
T 1ygy_A 81 DVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQR 160 (529)
T ss_dssp CHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHH
T ss_pred CHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCCCEEEEEeeCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987778999999999999999999999999
Q ss_pred HhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHH
Q 006212 248 AKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 248 lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~ 327 (656)
++++||+|++|||+...+.+.+.|+..+++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||+++|++
T Consensus 161 l~~~G~~V~~~d~~~~~~~a~~~g~~~~~l~e~~~~aDvV~l~~P~~~~t~~~i~~~~~~~~k~g~ilin~arg~iv~~~ 240 (529)
T 1ygy_A 161 IAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEA 240 (529)
T ss_dssp HHTTTCEEEEECTTSCHHHHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHH
T ss_pred HHhCCCEEEEECCCCChhHHHhcCcEEcCHHHHHhcCCEEEECCCCchHHHHHhCHHHHhCCCCCCEEEECCCCchhhHH
Confidence 99999999999998876667788988889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCC
Q 006212 328 ALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVP 407 (656)
Q Consensus 328 aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~ 407 (656)
+|+++|++|+++||++|||+.||+ +++|||+++|||+|||++++|.|++++++..+++++.+++.|..+.+.||.+.
T Consensus 241 aL~~al~~g~i~ga~lDv~~~eP~-~~~~L~~~~~vilTPh~~~~t~ea~~~~~~~~~~~l~~~l~~~~~~~~v~~~~-- 317 (529)
T 1ygy_A 241 ALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVVTPHLGASTAEAQDRAGTDVAESVRLALAGEFVPDAVNVGG-- 317 (529)
T ss_dssp HHHHHHHTSSEEEEEESSCSSSSC-SCCGGGGCTTEEECSSCSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSCCS--
T ss_pred HHHHHHHcCCccEEEEeeccCCCC-CCchHHhCCCEEEccccCCCCHHHHHHHHHHHHHHHHHHHcCCCCCcccCCcc--
Confidence 999999999999999999999997 68999999999999999999999999999999999999999999999998765
Q ss_pred hhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhc
Q 006212 408 SEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQ 487 (656)
Q Consensus 408 ~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke 487 (656)
++.++.++||+.+++++|+++.||++| +|++++++|+|+++ + .+++++|+++++|+|+.+.++.+|++||+.+|++
T Consensus 318 ~~~hd~i~P~l~La~~lg~~~~qla~g--~~~ditria~G~~~-~-~~i~~~n~a~l~g~L~~~~~~~~~~vnA~~iA~e 393 (529)
T 1ygy_A 318 GVVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA-A-EEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAE 393 (529)
T ss_dssp TTSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG-G-SCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHH
T ss_pred cccchhhhhHHHHHHHHHHHHHHHhCC--CceEEEEEEEeecc-c-cCCcHHHHHHHHHhcCCCCCCCccccCHHHHHHH
Confidence 788899999999999999999999999 99999999999998 7 7899999999999999999888999999999999
Q ss_pred cCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEECC--eeEEEEEcceeEEeecCccEEEEEe
Q 006212 488 KGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFG--IPHLTRVGSFGVDASLEGNLILCRQ 565 (656)
Q Consensus 488 ~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG--~~rI~~IdGf~V~~~g~~~~Llv~~ 565 (656)
+||++.|.+.+.+. .|+|++++++++ .++++++|.|+|+|| .++|++||||++++.|++|+|++.|
T Consensus 394 ~Gi~i~~~~~~~~~---~~~n~v~v~~~~---------~~~~~~~v~Gt~~gg~g~~~i~~i~g~~v~~~~~~~~l~v~~ 461 (529)
T 1ygy_A 394 RGVTAEICKASESP---NHRSVVDVRAVG---------ADGSVVTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHY 461 (529)
T ss_dssp HSCEEEEEEESCCS---SSSEEEEEEEEC---------TTSCEEEEEEEEETTTTEEEEEEETTEEEEEESCSEEEEEEE
T ss_pred cCCEEEEEEccCCC---CCCCEEEEEEEE---------CCCCEEEEEEEEeCCCCcEEEEEECCEEEEecCCccEEEEEc
Confidence 99999998766443 799999999972 377899999999974 9999999999999999999999999
Q ss_pred cCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEeec
Q 006212 566 VDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 566 ~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
+|+||+|++|+++|++++|||++|+++|.+++++|+|+|++|++++++++++|+++|+|.++++++|+
T Consensus 462 ~D~PG~I~~v~~~Lg~~~INIa~m~v~r~~~~~~a~~~i~vd~~~~~~~l~~l~~~~~i~~v~~v~~~ 529 (529)
T 1ygy_A 462 VDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 529 (529)
T ss_dssp SCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEECC
T ss_pred CCCCchHHHHHHHHHhcCCCeeeEEEecCCCCCEEEEEEEECCCCCHHHHHHHhcCCCccEEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999863
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-77 Score=647.91 Aligned_cols=391 Identities=31% Similarity=0.444 Sum_probs=347.6
Q ss_pred CCCeEEEeCCCCHhHHHHhhcC-C-cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 89 PKPTILVSEKLGEAGLAILRSF-G-NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~-~-~v~~~~-~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
.|+|||+++++++.+++.|++. . ++.+.. ..+++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 3 ~~~kil~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~l~~~~~~~d~l~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d 81 (404)
T 1sc6_A 3 DKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGTN 81 (404)
T ss_dssp SSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCCT
T ss_pred CceEEEEeCCCCHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCcEEEECCcccC
Confidence 3568999999999999999875 3 676643 568999999999999999999889999999998 59999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA 245 (656)
|||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.|.+|+|||+||||+|+||+.+|
T Consensus 82 ~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~gktlGiIGlG~IG~~vA 161 (404)
T 1sc6_A 82 QVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 161 (404)
T ss_dssp TBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHH
T ss_pred ccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCCCEEEEEeECHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999998766778999999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 246 RRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 246 ~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+++++|||+|++|||+.... ..++..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++
T Consensus 162 ~~l~~~G~~V~~~d~~~~~~---~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lIN~aRg~~v 238 (404)
T 1sc6_A 162 ILAESLGMYVYFYDIENKLP---LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVV 238 (404)
T ss_dssp HHHHHTTCEEEEECSSCCCC---CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSB
T ss_pred HHHHHCCCEEEEEcCCchhc---cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhHHHHhhcCCCeEEEECCCChHH
Confidence 99999999999999975321 1135554 8999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCC----CCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAK----DSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATA 400 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~----~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~ 400 (656)
|+++|+++|++|+++||++|||+.||++. ++|||++||+|+|||+|++|.|++++++..+++|+.+|++|+.+.+.
T Consensus 239 d~~aL~~aL~~g~i~gA~lDVf~~EP~~~~~~~~~pL~~~~nvilTPHi~~~T~ea~~~~~~~~~~nl~~~l~g~~~~~~ 318 (404)
T 1sc6_A 239 DIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFDNVLLTPHIGGSTQEAQENIGLEVAGKLIKYSDNGSTLSA 318 (404)
T ss_dssp CHHHHHHHHHTTSEEEEEEEC---------CTTTGGGTTCTTEEEECCCSCCSHHHHHHHHHHHHHHHHHHHHHCCCTTB
T ss_pred hHHHHHHHHHcCCccEEEEeecCCCCCCccccccchhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCcce
Confidence 99999999999999999999999999763 57999999999999999999999999999999999999999999999
Q ss_pred ccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccc
Q 006212 401 INAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVN 480 (656)
Q Consensus 401 Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vN 480 (656)
||.|.+. +.
T Consensus 319 vn~p~~~-----------------------------------------~~------------------------------ 327 (404)
T 1sc6_A 319 VNFPEVS-----------------------------------------LP------------------------------ 327 (404)
T ss_dssp SSSCCCC-----------------------------------------CC------------------------------
T ss_pred ecccccc-----------------------------------------cC------------------------------
Confidence 9988765 00
Q ss_pred hHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCccE
Q 006212 481 ADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGNL 560 (656)
Q Consensus 481 A~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~~ 560 (656)
. . | .+.
T Consensus 328 --------------------~---~--~-------------------------------------------------~~r 333 (404)
T 1sc6_A 328 --------------------L---H--G-------------------------------------------------GRR 333 (404)
T ss_dssp --------------------C---C--S-------------------------------------------------SEE
T ss_pred --------------------c---C--C-------------------------------------------------cce
Confidence 0 0 0 123
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEE
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v 630 (656)
|++.|.|+||+|++|+++|++++|||++|++.| +|+.|+|++++|++ ++++++++|++++++.+++++
T Consensus 334 l~~~h~d~PGvi~~i~~iL~~~~iNIa~m~~~r--~g~~A~~vidvD~~~~~~~~~l~~l~~i~~v~~vr~l 403 (404)
T 1sc6_A 334 LMHIHENRPGVLTALNKIFAEQGVNIAAQYLQT--SAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 403 (404)
T ss_dssp EEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEE--CSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCCHHHhhccC--CCCEEEEEEEcCCCCCCCHHHHHHHhcCCCeeEEEEe
Confidence 678899999999999999999999999999998 78999999999999 999999999999999999876
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-70 Score=596.33 Aligned_cols=393 Identities=33% Similarity=0.492 Sum_probs=347.5
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCC--cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006212 88 TPKPTILVSEKLGEAGLAILRSFG--NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l~~~~--~v~~~~-~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~Gv 164 (656)
+.++|||+++.+++.+.+.|++.+ ++++.. .++++++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+
T Consensus 13 ~~~~kIl~~~~i~~~~~~~l~~~g~~~v~~~~~~~~~~~l~~~~~~~d~l~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~ 91 (416)
T 3k5p_A 13 RDRINVLLLEGISQTAVEYFKSSGYTNVTHLPKALDKADLIKAISSAHIIGIRSRTQLTEEIFAAA-NRLIAVGCFSVGT 91 (416)
T ss_dssp GGGSCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHHTTCSEEEECSSCCBCHHHHHHC-TTCCEEEECSSCC
T ss_pred CCCcEEEEECCCCHHHHHHHHHCCCcEEEECCCCCCHHHHHHHccCCEEEEEcCCCCCCHHHHHhC-CCcEEEEECcccc
Confidence 347899999999999999998764 666543 468999999999999999998889999999998 5999999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.+.+++|||+||||+|+||+.+
T Consensus 92 d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~gktvGIIGlG~IG~~v 171 (416)
T 3k5p_A 92 NQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRGKTLGIVGYGNIGSQV 171 (416)
T ss_dssp TTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTTCEEEEECCSHHHHHH
T ss_pred CccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCCCEEEEEeeCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999987677899999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 245 ARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
|+++++|||+|++||++..... .+.. ..++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus 172 A~~l~~~G~~V~~yd~~~~~~~---~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~~~l~~mk~gailIN~aRG~v 248 (416)
T 3k5p_A 172 GNLAESLGMTVRYYDTSDKLQY---GNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITEAKLRKMKKGAFLINNARGSD 248 (416)
T ss_dssp HHHHHHTTCEEEEECTTCCCCB---TTBEECSSHHHHHHHCSEEEECCCC-----CCBCHHHHHHSCTTEEEEECSCTTS
T ss_pred HHHHHHCCCEEEEECCcchhcc---cCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCHHHHhhCCCCcEEEECCCChh
Confidence 9999999999999998743211 1233 35899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCC----CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~----~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
+|++||+++|++|+|+||++|||+.||++.+ +|||++||+++|||+|++|.|++++++..+++|+.+|++++.+.+
T Consensus 249 vd~~aL~~aL~~g~i~gAalDVf~~EP~~~~~~~~~pL~~~~nvilTPHig~~T~ea~~~~~~~~~~nl~~~l~~g~~~~ 328 (416)
T 3k5p_A 249 VDLEALAKVLQEGHLAGAAIDVFPVEPASNGERFSTPLQGLENVILTPHIGGSTEEAQERIGTEVTRKLVEYSDVGSTVG 328 (416)
T ss_dssp BCHHHHHHHHHTTSEEEEEECCCSSCCSSTTSCCCCTTTTCTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHHHCCCTT
T ss_pred hhHHHHHHHHHcCCccEEEeCCCCCCCCCcccccchhHhcCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHHHhhCCCCc
Confidence 9999999999999999999999999998764 799999999999999999999999999999999999999888888
Q ss_pred cccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhcccccc
Q 006212 400 AINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLV 479 (656)
Q Consensus 400 ~Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~v 479 (656)
.||.|.+.. | ..
T Consensus 329 ~Vn~p~~~~-------~--------------------------------------------------------~~----- 340 (416)
T 3k5p_A 329 AVNFPQVQL-------P--------------------------------------------------------PR----- 340 (416)
T ss_dssp BSSSCCCCC-------C--------------------------------------------------------CC-----
T ss_pred eeeCCCcCC-------C--------------------------------------------------------CC-----
Confidence 888753210 0 00
Q ss_pred chHhHhhccCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEECCeeEEEEEcceeEEeecCcc
Q 006212 480 NADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKFGIPHLTRVGSFGVDASLEGN 559 (656)
Q Consensus 480 NA~~iAke~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~gG~~rI~~IdGf~V~~~g~~~ 559 (656)
. + .+
T Consensus 341 ------------------~---------~-------------------------------------------------~~ 344 (416)
T 3k5p_A 341 ------------------P---------T-------------------------------------------------GT 344 (416)
T ss_dssp ------------------S---------S-------------------------------------------------SE
T ss_pred ------------------C---------C-------------------------------------------------ce
Confidence 0 0 11
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCCCHHHHHHHhcCCCccEEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
-|.+.|.+.|||+++|.++|+++||||.+|... .+++.|+.++.+| ++.+++++++|++++++..++++
T Consensus 345 r~~~~h~n~p~~~~~i~~~~~~~~~ni~~~~~~--~~~~~~y~~~d~~~~~~~~~~~~~~l~~~~~~~~~r~~ 415 (416)
T 3k5p_A 345 RFMHVHENRPGILNSLMNVFSHHHINIASQFLQ--TDGEVGYLVMEADGVGEASDAVLQEIREIPGTIRARLL 415 (416)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHTTCCEEEEEEE--ECSSCEEEEEEECCCHHHHHHHHHHHHTSTTEEEEEEE
T ss_pred EEEEEecCCccHHHHHHHHHHHcCCCHHHHhcc--CCCceEEEEEEecCCCCCcHHHHHHHHhCCCEEEEEEe
Confidence 133579999999999999999999999999874 4578999999999 78888999999999999999986
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-67 Score=564.82 Aligned_cols=313 Identities=26% Similarity=0.464 Sum_probs=291.2
Q ss_pred CCCCCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccc
Q 006212 87 VTPKPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVG 163 (656)
Q Consensus 87 ~~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~G 163 (656)
.+.|||||++++++++.++.|++.+++.+.. ..+++++.+.++++|++++++.+++++++|++++|+||+|+++|+|
T Consensus 25 ~~~~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~l~~~~~~~d~li~~~~~~i~~~~l~~~~~~Lk~I~~~~~G 104 (345)
T 4g2n_A 25 THPIQKAFLCRRFTPAIEAELRQRFDLEVNLEDTVLTPSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLSVG 104 (345)
T ss_dssp --CCCEEEESSCCCHHHHHHHHHHSEEEECTTCCCCCHHHHHHHTTTCSEEEECTTSCBCHHHHHHTTTTCCEEEESSSC
T ss_pred cCCCCEEEEeCCCCHHHHHHHHccCCEEEecCCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHHhhcCCceEEEEcCCc
Confidence 3568999999999999999999888887642 4588999999999999999877899999999875699999999999
Q ss_pred cCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChh
Q 006212 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKV 240 (656)
Q Consensus 164 vD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~I 240 (656)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+. .+.|.+|+||||||||+|+|
T Consensus 105 ~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l~gktvGIIGlG~I 184 (345)
T 4g2n_A 105 YDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGLTGRRLGIFGMGRI 184 (345)
T ss_dssp CTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEESCSHH
T ss_pred ccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccccccCCCEEEEEEeChh
Confidence 999999999999999999999999999999999999999999999999999999853 34689999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
|+++|+++++|||+|++||++. +.+.+ .|+.++ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+
T Consensus 185 G~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN~ 262 (345)
T 4g2n_A 185 GRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDHDRIAKIPEGAVVINI 262 (345)
T ss_dssp HHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHSCTTEEEEEC
T ss_pred HHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCHHHHhhCCCCcEEEEC
Confidence 9999999999999999999986 33322 277776 9999999999999999999999999999999999999999999
Q ss_pred CCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006212 319 ARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (656)
Q Consensus 319 aRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (656)
|||+++|+++|+++|++|+|+||+||||+.|| +.++|||++||+++|||+|++|.|+++++...+++|+.+|++|+++.
T Consensus 263 aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP-~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~l~g~~~~ 341 (345)
T 4g2n_A 263 SRGDLINDDALIEALRSKHLFAAGLDVFANEP-AIDPRYRSLDNIFLTPHIGSATHETRDAMGWLLIQGIEALNQSDVPD 341 (345)
T ss_dssp SCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCT
T ss_pred CCCchhCHHHHHHHHHhCCceEEEecCCCCCC-CCCchHHhCCCEEEcCccCcCCHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999 67999999999999999999999999999999999999999999998
Q ss_pred cccc
Q 006212 399 TAIN 402 (656)
Q Consensus 399 ~~Vn 402 (656)
+.|+
T Consensus 342 ~~V~ 345 (345)
T 4g2n_A 342 NLIS 345 (345)
T ss_dssp TBCC
T ss_pred CCcC
Confidence 8774
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-66 Score=552.59 Aligned_cols=314 Identities=29% Similarity=0.469 Sum_probs=297.1
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
+||||++++++++.++.|++.+++.+.. .++++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+||
T Consensus 2 ~~kvlv~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~i~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (330)
T 4e5n_A 2 LPKLVITHRVHEEILQLLAPHCELITNQTDSTLTREEILRRCRDAQAMMAFMPDRVDADFLQAC-PELRVIGCALKGFDN 80 (330)
T ss_dssp CCEEEECSCCCHHHHHHHTTTCEEECCCSSSCCCHHHHHHHHTTCSEEEECTTCCBCHHHHHHC-TTCCEEEESSSCCTT
T ss_pred CCEEEEecCCCHHHHHHHHhCCeEEEecCCCCCCHHHHHHHhCCCeEEEEeCCCCCCHHHHhhC-CCCcEEEECCCcccc
Confidence 6899999999999999999888776542 357899999999999999987789999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc--cccccccCCCEEEEEecChhHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS--KYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~--~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|... .+.|.+|+||||||||+|+||+.+
T Consensus 81 id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~g~tvGIIG~G~IG~~v 160 (330)
T 4e5n_A 81 FDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGLDNATVGFLGMGAIGLAM 160 (330)
T ss_dssp BCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCSTTCEEEEECCSHHHHHH
T ss_pred cCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCccCCCEEEEEeeCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999732 346889999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 245 ARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
|+++++|||+|++||++. ..+.+...|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~~ 240 (330)
T 4e5n_A 161 ADRLQGWGATLQYHEAKALDTQTEQRLGLRQVACSELFASSDFILLALPLNADTLHLVNAELLALVRPGALLVNPCRGSV 240 (330)
T ss_dssp HHHTTTSCCEEEEECSSCCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCCCcHhHHHhcCceeCCHHHHHhhCCEEEEcCCCCHHHHHHhCHHHHhhCCCCcEEEECCCCch
Confidence 999999999999999987 6666777888888999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCC-------CCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEE-------PPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~E-------P~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (656)
+|+++|+++|++|+|+||++|||+.| |++.++|||++||+++|||+|++|.|+++++...+++|+.+|++|+.
T Consensus 241 vd~~aL~~aL~~g~i~gA~lDV~~~E~~~~~~~Pl~~~~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~g~~ 320 (330)
T 4e5n_A 241 VDEAAVLAALERGQLGGYAADVFEMEDWARADRPQQIDPALLAHPNTLFTPHIGSAVRAVRLEIERCAAQNILQALAGER 320 (330)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCGGGCTTCTTCCSSCCHHHHTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hCHHHHHHHHHhCCccEEEecccccccccccCCCCCCCchHHcCCCEEECCcCCCChHHHHHHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999 98889999999999999999999999999999999999999999999
Q ss_pred CCccccCC
Q 006212 397 SATAINAP 404 (656)
Q Consensus 397 ~~~~Vn~p 404 (656)
+.+.||.|
T Consensus 321 ~~~~vn~~ 328 (330)
T 4e5n_A 321 PINAVNRL 328 (330)
T ss_dssp CTTBSSCC
T ss_pred CCCccCCC
Confidence 99999975
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-65 Score=546.90 Aligned_cols=311 Identities=28% Similarity=0.407 Sum_probs=255.9
Q ss_pred cCCCCCeEEEeCCCCHhHHHHhhcCCcEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006212 86 AVTPKPTILVSEKLGEAGLAILRSFGNVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (656)
Q Consensus 86 ~~~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~-~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~Gv 164 (656)
..|+||+||++++++++.++.|++.+++.... ..+++++.+.++++|++++++.+++++++++++ |+||+|+++|+||
T Consensus 26 ~~~~~~~vl~~~~~~~~~~~~L~~~~~v~~~~~~~~~~~~~~~~~~~d~li~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~ 104 (340)
T 4dgs_A 26 FRNVKPDLLLVEPMMPFVMDELQRNYSVHRLYQAADRPALEAALPSIRAVATGGGAGLSNEWMEKL-PSLGIIAINGVGT 104 (340)
T ss_dssp -------CEECSCCCHHHHHTHHHHSCCEETTCGGGHHHHHHHGGGCCEEEEETTTCBCHHHHHHC-SSCCEEEEESSCC
T ss_pred cCCCCCEEEEECCCCHHHHHHHhcCCcEEEeCCCCCHHHHHHHhCCcEEEEEcCCCCCCHHHHhhC-CCCEEEEECCCCc
Confidence 33568999999999999999998877776543 246778888889999999998889999999998 5999999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-c-ccccccCCCEEEEEecChhHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS-K-YVGVSLVGKTLAVMGFGKVGS 242 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~-~~g~~l~gktvGIIGlG~IG~ 242 (656)
||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+. . ..|.+|+||||||||+|+||+
T Consensus 105 d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktiGIIGlG~IG~ 184 (340)
T 4dgs_A 105 DKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLGHSPKGKRIGVLGLGQIGR 184 (340)
T ss_dssp TTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCCCCCTTCEEEEECCSHHHH
T ss_pred cccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCccccccCCEEEEECCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999874 2 257899999999999999999
Q ss_pred HHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 243 EVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 243 ~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
.+|+++++|||+|++||++... ..++.. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||
T Consensus 185 ~vA~~l~~~G~~V~~~dr~~~~----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~~~l~~mk~gailIN~aRG 260 (340)
T 4dgs_A 185 ALASRAEAFGMSVRYWNRSTLS----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDASLLQALGPEGIVVNVARG 260 (340)
T ss_dssp HHHHHHHTTTCEEEEECSSCCT----TSCCEECSSHHHHHHTCSEEEECC----------CHHHHHHTTTTCEEEECSCC
T ss_pred HHHHHHHHCCCEEEEEcCCccc----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhHHHHhcCCCCCEEEECCCC
Confidence 9999999999999999998643 234443 48999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 006212 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 322 ~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~V 401 (656)
+++|+++|+++|++|+|+||+||||+.||++. +|||++|||++|||+|++|.|++++++..+++|+.+|++|+++.+.|
T Consensus 261 ~vvde~aL~~aL~~g~i~gA~LDVf~~EP~~~-~~L~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~V 339 (340)
T 4dgs_A 261 NVVDEDALIEALKSGTIAGAGLDVFVNEPAIR-SEFHTTPNTVLMPHQGSATVETRMAMGKLVLANLAAHFAGEKAPNTV 339 (340)
T ss_dssp --------------CCSSEEEESCCSSSSSCC-SHHHHSSSEEECSSCSSCCHHHHHHHHHHHHHHHHHHHTTSCCTTBC
T ss_pred cccCHHHHHHHHHcCCceEEEeCCcCCCCCCc-cchhhCCCEEEcCcCCcCCHHHHHHHHHHHHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999999999864 69999999999999999999999999999999999999999999988
Q ss_pred c
Q 006212 402 N 402 (656)
Q Consensus 402 n 402 (656)
|
T Consensus 340 n 340 (340)
T 4dgs_A 340 N 340 (340)
T ss_dssp -
T ss_pred C
Confidence 7
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-65 Score=541.99 Aligned_cols=274 Identities=29% Similarity=0.455 Sum_probs=256.6
Q ss_pred hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchh
Q 006212 127 KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206 (656)
Q Consensus 127 ~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~ 206 (656)
.++++|+++++..+++++++|+++ |+||+|+++|+|+||||+++|+++||.|+|+||+++.+||||++++||+++|++.
T Consensus 39 ~l~~ad~i~v~~~~~i~~~~l~~~-p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~ 117 (334)
T 3kb6_A 39 ELKKAELISVFVYDKLTEELLSKM-PRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLK 117 (334)
T ss_dssp HHHHCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHH
T ss_pred HhcCCCEEEEeCCCCCCHHHHhcC-CCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccc
Confidence 357899999998899999999998 5999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHccccccc-cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCC
Q 006212 207 QADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285 (656)
Q Consensus 207 ~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aD 285 (656)
++++.+++|+|... ...|.+|+|||+||||+|+||+.+|+++++|||+|++|||+... .....++.++++++++++||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~~~-~~~~~~~~~~~l~ell~~sD 196 (334)
T 3kb6_A 118 RIEDRVKKLNFSQDSEILARELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVKRE-DLKEKGCVYTSLDELLKESD 196 (334)
T ss_dssp HHHHHHHTTCCCCCGGGCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCH-HHHHTTCEECCHHHHHHHCS
T ss_pred cccccccccccccccccccceecCcEEEEECcchHHHHHHHhhcccCceeeecCCccch-hhhhcCceecCHHHHHhhCC
Confidence 99999999998754 35689999999999999999999999999999999999998643 34567888899999999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC----------
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS---------- 355 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~---------- 355 (656)
+|++|||+|++|++|||++.|++||+|++|||+|||++||++||++||++|+|+||+||||+.||++.++
T Consensus 197 ivslh~Plt~~T~~li~~~~l~~mk~~a~lIN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl~~~~~~~~~~~~~~ 276 (334)
T 3kb6_A 197 VISLHVPYTKETHHMINEERISLMKDGVYLINTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEILILKKYTEGKATDK 276 (334)
T ss_dssp EEEECCCCCTTTTTCBCHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHHHHTTGGGGTCCCHH
T ss_pred EEEEcCCCChhhccCcCHHHHhhcCCCeEEEecCccccccHHHHHHHHHhCCceEEEEeCCCCCCCcccccccccccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999976555
Q ss_pred -----ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 356 -----KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 356 -----~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
||+.+|||++|||+|++|.|++++++..+++|+.+|++|++....+|
T Consensus 277 ~~~~~~L~~~~nvilTPHia~~T~ea~~~~~~~~~~ni~~~l~Ge~~~~~~n 328 (334)
T 3kb6_A 277 NLKILELACKDNVIITPHIAYYTDKSLERIREETVKVVKAFVKGDLEQIKGN 328 (334)
T ss_dssp HHHHHHHHTSTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCGGGGGGG
T ss_pred cccchhhccCCCEEECCchhhChHHHHHHHHHHHHHHHHHHHcCCCCcCCCC
Confidence 68899999999999999999999999999999999999997755544
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-63 Score=528.33 Aligned_cols=310 Identities=48% Similarity=0.736 Sum_probs=283.2
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 88 TPKPTILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
+.+++||+++.+.+...+.|++. .++......+++++.+.++++|++++++.+++++++++++ |+||+|+++|+|+||
T Consensus 24 ~~~~~vli~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 102 (335)
T 2g76_A 24 ANLRKVLISDSLDPCCRKILQDGGLQVVEKQNLSKEELIAELQDCEGLIVRSATKVTADVINAA-EKLQVVGRAGTGVDN 102 (335)
T ss_dssp --CCEEEECSCCCHHHHHHHHHHTCEEEECCSCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-SSCCEEEESSSSCTT
T ss_pred ccceEEEEcCCCCHHHHHHHHhCCCEEEECCCCCHHHHHHHhcCceEEEEcCCCCCCHHHHhhC-CCCcEEEECCCCcch
Confidence 34578999999999988888775 3565555568899999999999999988788999999998 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 246 (656)
||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+++|+|.+..+.+.++.||||||||+|.||+++|+
T Consensus 103 id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g~tvgIIGlG~IG~~vA~ 182 (335)
T 2g76_A 103 VDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNGKTLGILGLGRIGREVAT 182 (335)
T ss_dssp BCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTTCEEEEECCSHHHHHHHH
T ss_pred hChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCcCEEEEEeECHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999987556788999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 247 ~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
++++|||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 183 ~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gailIN~arg~vvd~ 262 (335)
T 2g76_A 183 RMQSFGMKTIGYDPIISPEVSASFGVQQLPLEEIWPLCDFITVHTPLLPSTTGLLNDNTFAQCKKGVRVVNCARGGIVDE 262 (335)
T ss_dssp HHHTTTCEEEEECSSSCHHHHHHTTCEECCHHHHGGGCSEEEECCCCCTTTTTSBCHHHHTTSCTTEEEEECSCTTSBCH
T ss_pred HHHHCCCEEEEECCCcchhhhhhcCceeCCHHHHHhcCCEEEEecCCCHHHHHhhCHHHHhhCCCCcEEEECCCccccCH
Confidence 99999999999999876666677888878999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
++|+++|++|+|+||++|||+.||+ .++|||++||+|+|||++++|.|+++++...+++|+.+|++|+++.+
T Consensus 263 ~aL~~aL~~g~i~gA~lDV~~~EP~-~~~~L~~~~nvilTPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~n 334 (335)
T 2g76_A 263 GALLRALQSGQCAGAALDVFTEEPP-RDRALVDHENVISCPHLGASTKEAQSRCGEEIAVQFVDMVKGKSLTG 334 (335)
T ss_dssp HHHHHHHHHTSEEEEEESCCSSSSC-SCCHHHHSTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHhCCccEEEEeecCCCCC-CCchHHhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 9999999999999999999999995 67999999999999999999999999999999999999999987654
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-63 Score=532.75 Aligned_cols=316 Identities=30% Similarity=0.472 Sum_probs=287.2
Q ss_pred CeEEEeCCCCHhH-----HHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEE-cCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 91 PTILVSEKLGEAG-----LAILRSFGNVECLYD--LSPEALCEKISQCDALIV-RSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 91 ~~ilv~~~l~~~~-----~~~l~~~~~v~~~~~--~~~eel~~~i~~~d~liv-~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
+||++++.+.... ++.|+. .++++... .+++++.+.++++|++++ ++.+++++++++++ |+||+|+++|+
T Consensus 3 mki~~~d~~~~~~~~~~~~~~l~~-~~v~~~~~~~~~~~~l~~~~~~ad~li~~~~~~~~~~~~l~~~-~~Lk~I~~~g~ 80 (352)
T 3gg9_A 3 LKIAVLDDYQDAVRKLDCFSLLQD-HEVKVFNNTVKGVGQLAARVADVEALVLIRERTRVTRQLLDRL-PKLKIISQTGR 80 (352)
T ss_dssp CEEEECCCTTCCGGGSGGGGGGTT-SEEEECCSCCCSHHHHHHHTTTCSEEEECTTSSCBCHHHHTTC-TTCCEEEESSC
T ss_pred eEEEEEcCccccchhhhhhhhhcC-ceEEEecCCCCCHHHHHHHhcCCeEEEEeCCCCCCCHHHHhhC-CCCeEEEEeCc
Confidence 6899999876432 334443 56666443 367889999999999998 66689999999998 59999999999
Q ss_pred cc----CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc----------ccccccC
Q 006212 163 GI----DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----------YVGVSLV 228 (656)
Q Consensus 163 Gv----D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~----------~~g~~l~ 228 (656)
|+ ||||+++|+++||.|+|+||+ +.+||||++++||+++|+++.+++.+++|+|.+.. ..|.+|+
T Consensus 81 G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~~~~~~~~l~ 159 (352)
T 3gg9_A 81 VSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGLKSTTMPPNFGIGRVLK 159 (352)
T ss_dssp CCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCCCCTTSCTTTTSBCCCT
T ss_pred ccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccccccccccccccCccCC
Confidence 99 999999999999999999999 99999999999999999999999999999998642 3588999
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
||||||||+|.||+++|+++++|||+|++||++...+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+
T Consensus 160 g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~ 239 (352)
T 3gg9_A 160 GQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGRENSKERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITVADLT 239 (352)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCHHHHT
T ss_pred CCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCCCHHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCHHHHh
Confidence 99999999999999999999999999999999865555677898887 99999999999999999999999999999999
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHH
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEA 387 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~ 387 (656)
.||+|++|||+|||+++|+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|++|.|+++++...+++|
T Consensus 240 ~mk~gailIN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~n 319 (352)
T 3gg9_A 240 RMKPTALFVNTSRAELVEENGMVTALNRGRPGMAAIDVFETEPILQGHTLLRMENCICTPHIGYVERESYEMYFGIAFQN 319 (352)
T ss_dssp TSCTTCEEEECSCGGGBCTTHHHHHHHHTSSSEEEECCCSSSCCCSCCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHH
T ss_pred hCCCCcEEEECCCchhhcHHHHHHHHHhCCccEEEecccCCCCCCCCChhhcCCCEEECCCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999899999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCccccCCCCChhh
Q 006212 388 VVGALRGELSATAINAPMVPSEV 410 (656)
Q Consensus 388 i~~~l~g~~~~~~Vn~p~~~~~~ 410 (656)
+.+|++|++ .+.||+..+.+.+
T Consensus 320 i~~~~~G~p-~~~Vn~~~~~~~~ 341 (352)
T 3gg9_A 320 ILDILQGNV-DSVANPTALAPAL 341 (352)
T ss_dssp HHHHHTTCC-TTBSCGGGSSCTT
T ss_pred HHHHHcCCC-CcccCHHHHHHHH
Confidence 999999965 5999976665544
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-63 Score=533.17 Aligned_cols=309 Identities=21% Similarity=0.310 Sum_probs=277.0
Q ss_pred CeEEEeCCC--------CHhHHHHhhcCCcEEEecCCCHhHHHh-hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec-
Q 006212 91 PTILVSEKL--------GEAGLAILRSFGNVECLYDLSPEALCE-KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA- 160 (656)
Q Consensus 91 ~~ilv~~~l--------~~~~~~~l~~~~~v~~~~~~~~eel~~-~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~- 160 (656)
++++++++. .++.++.|++.+++......+.+|+.+ .+.++|+++. .+++++++|+++ |+||+|++.
T Consensus 28 r~ivll~~~~~~~~~~~~~~~~~~L~~~~~v~~~~~~~~~e~~~~~~~~~~~i~~--~~~i~~~~l~~~-p~Lk~I~~~~ 104 (365)
T 4hy3_A 28 RPLAISAPEPRSLDLIFSDEARAALHSKYEIVEADPENIAGLGDDILGRARYIIG--QPPLSAETLARM-PALRSILNVE 104 (365)
T ss_dssp CCEEEEECTTSCHHHHCCHHHHHHHHHHSEEEECCGGGGGGSCTTHHHHEEEEEE--CCCCCHHHHTTC-TTCCEEECCS
T ss_pred CCEEEEcCCcccccccCCHHHHHHHhCCcEEEECCCCChHHHHHHhhCCeEEEEe--CCCCCHHHHhhC-CCCeEEEEec
Confidence 345556655 556788898888877544445566554 4568888774 368999999998 599999975
Q ss_pred ccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccc--cccc-cccccccCCCEEEEEec
Q 006212 161 GVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGK--WLRS-KYVGVSLVGKTLAVMGF 237 (656)
Q Consensus 161 g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~--W~~~-~~~g~~l~gktvGIIGl 237 (656)
|+|+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++++++.+|+|+ |.+. .+.+.+|+||||||||+
T Consensus 105 ~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~~~~~l~gktvGIIGl 184 (365)
T 4hy3_A 105 SNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNASARLIAGSEIGIVGF 184 (365)
T ss_dssp SSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTTSCCCSSSSEEEEECC
T ss_pred ccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccccccccCCCEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999 5432 24688999999999999
Q ss_pred ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEE
Q 006212 238 GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 238 G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailIN 317 (656)
|+||+.+|+++++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||
T Consensus 185 G~IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mk~gailIN 264 (365)
T 4hy3_A 185 GDLGKALRRVLSGFRARIRVFDPWLPRSMLEENGVEPASLEDVLTKSDFIFVVAAVTSENKRFLGAEAFSSMRRGAAFIL 264 (365)
T ss_dssp SHHHHHHHHHHTTSCCEEEEECSSSCHHHHHHTTCEECCHHHHHHSCSEEEECSCSSCC---CCCHHHHHTSCTTCEEEE
T ss_pred CcccHHHHHhhhhCCCEEEEECCCCCHHHHhhcCeeeCCHHHHHhcCCEEEEcCcCCHHHHhhcCHHHHhcCCCCcEEEE
Confidence 99999999999999999999999976666777899888999999999999999999999999999999999999999999
Q ss_pred cCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 318 VARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 318 vaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
+|||+++|+++|+++|++|+|+ |+||||+.||++.++|||++||+++|||+|++|.|++++++..+++|+.+|++|+++
T Consensus 265 ~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~EPl~~~~pL~~~~nvilTPHia~~t~e~~~~~~~~~~~ni~~~~~G~~~ 343 (365)
T 4hy3_A 265 LSRADVVDFDALMAAVSSGHIV-AASDVYPEEPLPLDHPVRSLKGFIRSAHRAGALDSAFKKMGDMVLEDMDLMDRGLPP 343 (365)
T ss_dssp CSCGGGSCHHHHHHHHHTTSSE-EEESCCSSSSCCTTCGGGTCTTEEECCSCSSCCHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CcCCchhCHHHHHHHHHcCCce-EEeeCCCCCCCCCCChhhcCCCEEECCccccCHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 9999999999999999999998 999999999998899999999999999999999999999999999999999999999
Q ss_pred CccccC
Q 006212 398 ATAINA 403 (656)
Q Consensus 398 ~~~Vn~ 403 (656)
.++||.
T Consensus 344 ~~~vn~ 349 (365)
T 4hy3_A 344 MRCKRA 349 (365)
T ss_dssp CSSEEC
T ss_pred cccccc
Confidence 999996
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-63 Score=529.15 Aligned_cols=313 Identities=22% Similarity=0.324 Sum_probs=273.5
Q ss_pred CCeEEEeCCCCH--hHHHHh-hcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHH-HHHhcC-CcceeEEecccc
Q 006212 90 KPTILVSEKLGE--AGLAIL-RSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRS-VFEAAN-GKLKVVGRAGVG 163 (656)
Q Consensus 90 ~~~ilv~~~l~~--~~~~~l-~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e-~l~~~~-~~LK~I~~~g~G 163 (656)
|+||++.+..+. ..++.+ ++. .++.+......+++.+.++++|++++++.++++++ +|++++ ++||+|+++|+|
T Consensus 1 Mmki~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~li~~~~~~~~~~~~l~~~~~~~Lk~I~~~~~G 80 (343)
T 2yq5_A 1 MTKIAMYNVSPIEVPYIEDWAKKNDVEIKTTDQALTSATVDLAEGCSSVSLKPLGPVDEEVVYQKLSEYGVKCIGLRIVG 80 (343)
T ss_dssp -CEEEEESCCGGGHHHHHHHHHHHTCEEEEESSCCSTTGGGGGTTCSEEEECCSSCBCCHHHHHHHHHTTCCEEEESSSC
T ss_pred CceEEEEecCcccHHHHHHHHHhCCeEEEECCCCCCHHHHHHhcCCcEEEEcCCCCcCHHHHHHhccccCceEEEECcee
Confidence 478998874332 223333 233 35655544334678899999999999987899999 999874 369999999999
Q ss_pred cCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHH-cccccc-ccccccccCCCEEEEEecChhH
Q 006212 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK-AGKWLR-SKYVGVSLVGKTLAVMGFGKVG 241 (656)
Q Consensus 164 vD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~-~g~W~~-~~~~g~~l~gktvGIIGlG~IG 241 (656)
+||||+++|+++||.|+|+|++|+.+||||++++||+++|+++.+++.++ +|+|.. ..+.+.+|+||||||||+|+||
T Consensus 81 ~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~gktvgIiGlG~IG 160 (343)
T 2yq5_A 81 FNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYNLTVGLIGVGHIG 160 (343)
T ss_dssp CTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGGSEEEEECCSHHH
T ss_pred ecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCCCeEEEEecCHHH
Confidence 99999999999999999999999999999999999999999999999999 998754 3467899999999999999999
Q ss_pred HHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 242 SEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 242 ~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
+++|+++++|||+|++||++... ..+.++.++++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||
T Consensus 161 ~~vA~~l~~~G~~V~~~d~~~~~--~~~~~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRg 238 (343)
T 2yq5_A 161 SAVAEIFSAMGAKVIAYDVAYNP--EFEPFLTYTDFDTVLKEADIVSLHTPLFPSTENMIGEKQLKEMKKSAYLINCARG 238 (343)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCG--GGTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECSCG
T ss_pred HHHHHHHhhCCCEEEEECCChhh--hhhccccccCHHHHHhcCCEEEEcCCCCHHHHHHhhHHHHhhCCCCcEEEECCCC
Confidence 99999999999999999998743 2234567779999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHhHhcCCeEEEEeeccCCCC--CCCC-----------CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHH
Q 006212 322 GVIDEEALVRALDSGVVAQAALDVFTEEP--PAKD-----------SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAV 388 (656)
Q Consensus 322 ~ivde~aL~~aL~~g~i~gA~lDV~~~EP--~~~~-----------~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i 388 (656)
+++|+++|+++|++|+|+||+||||+.|| ++.+ +|||++|||++|||+|++|.|+++++...+++|+
T Consensus 239 ~~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~l~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~ni 318 (343)
T 2yq5_A 239 ELVDTGALIKALQDGEIAGAGLDTLAGESSYFGHTGLTDSEIPEDYKTLAKMPNVVITPHSAFYTETSIRNMVQICLTDQ 318 (343)
T ss_dssp GGBCHHHHHHHHHHTSSSCEEESCCTTGGGTTTCCSCCTTTSCHHHHHHTTCTTEEECSSCTTCBHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHcCCCcEEEecccccCCCccccccccccccccchhHHhcCCCEEECCccccchHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 4444 4899999999999999999999999999999999
Q ss_pred HHHHcCCCCCccccCC
Q 006212 389 VGALRGELSATAINAP 404 (656)
Q Consensus 389 ~~~l~g~~~~~~Vn~p 404 (656)
.+|++|+.+.+.||..
T Consensus 319 ~~~l~g~~~~~~v~~~ 334 (343)
T 2yq5_A 319 LTIAKGGRPRSIVNLT 334 (343)
T ss_dssp HHHHTTCCCTTBC---
T ss_pred HHHHcCCCCCceECCc
Confidence 9999999999999853
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-63 Score=529.37 Aligned_cols=311 Identities=23% Similarity=0.281 Sum_probs=278.9
Q ss_pred CCCCeEEEeCCCCHhHHHHh-hcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 88 TPKPTILVSEKLGEAGLAIL-RSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l-~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
..|+|||+++++.+...+.| ++. .++++....+.+++.+.++++|+++++. ++++++++++ |+||||+++|+|||
T Consensus 3 ~~~mkili~~~~~~~~~~~L~~~~~p~~~~~~~~~~~~~~~~~~~ad~li~~~--~~~~~~l~~~-~~Lk~I~~~~~G~d 79 (324)
T 3hg7_A 3 LSQRTLLLLSQDNAHYERLLKAAHLPHLRILRADNQSDAEKLIGEAHILMAEP--ARAKPLLAKA-NKLSWFQSTYAGVD 79 (324)
T ss_dssp -CCEEEEEESTTHHHHHHHHHHSCCTTEEEEECSSHHHHHHHGGGCSEEEECH--HHHGGGGGGC-TTCCEEEESSSCCG
T ss_pred ccccEEEEecCCCHHHHHHHhhccCCCeEEEeCCChhHHHHHhCCCEEEEECC--CCCHHHHhhC-CCceEEEECCCCCC
Confidence 45689999999999999999 654 4777765567888899999999999853 4667889887 59999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA 245 (656)
|||++++++ ||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.+ ..+.+|+||||||||+|.||+++|
T Consensus 80 ~id~~~~~~-gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~--~~~~~l~g~tvGIIGlG~IG~~vA 156 (324)
T 3hg7_A 80 VLLDARCRR-DYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQS--HPYQGLKGRTLLILGTGSIGQHIA 156 (324)
T ss_dssp GGSCTTSCC-SSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCC--CCCCCSTTCEEEEECCSHHHHHHH
T ss_pred ccChHHHhC-CEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcC--CCCcccccceEEEEEECHHHHHHH
Confidence 999998865 99999999999999999999999999999999999999999986 357899999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 246 ~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
+++++|||+|++||++.........+....++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|
T Consensus 157 ~~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~~~l~~mk~gailIN~aRG~~vd 236 (324)
T 3hg7_A 157 HTGKHFGMKVLGVSRSGRERAGFDQVYQLPALNKMLAQADVIVSVLPATRETHHLFTASRFEHCKPGAILFNVGRGNAIN 236 (324)
T ss_dssp HHHHHTTCEEEEECSSCCCCTTCSEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCTTTTTCSCTTCEEEECSCGGGBC
T ss_pred HHHHhCCCEEEEEcCChHHhhhhhcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHHHHHhcCCCCcEEEECCCchhhC
Confidence 99999999999999876322111112234589999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCC
Q 006212 326 EEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPM 405 (656)
Q Consensus 326 e~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~ 405 (656)
+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|++|.+ .++...+++|+.+|++|+++.+.||.+.
T Consensus 237 e~aL~~aL~~g~i~ga~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~nl~~~~~G~~~~~~V~~~~ 314 (324)
T 3hg7_A 237 EGDLLTALRTGKLGMAVLDVFEQEPLPADSPLWGQPNLIITPHNSAYSFP--DDVAQIFVRNYIRFIDGQPLDGKIDFDK 314 (324)
T ss_dssp HHHHHHHHHTTSSSEEEESCCSSSSCCTTCTTTTCTTEEECCSCSSCCCH--HHHHHHHHHHHHHHHTTCCCTTBCCCC-
T ss_pred HHHHHHHHHcCCceEEEeccCCCCCCCCCChhhcCCCEEEeCCCccccHH--HHHHHHHHHHHHHHHcCCCCcceEChhh
Confidence 99999999999999999999999999999999999999999999999987 5788999999999999999999999764
Q ss_pred C
Q 006212 406 V 406 (656)
Q Consensus 406 ~ 406 (656)
.
T Consensus 315 ~ 315 (324)
T 3hg7_A 315 G 315 (324)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-63 Score=528.62 Aligned_cols=313 Identities=29% Similarity=0.408 Sum_probs=286.5
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEecccc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGVG 163 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~--~~~eel~~~i~~~d~liv~~~--~~v~~e~l~~~~~~LK~I~~~g~G 163 (656)
.+|++|..+.......+.|++.+ ++.+... .+.+++.+.++++|++|+++. .++++++++++ |+||+|+++|+|
T Consensus 18 ~~~~~lg~~~~~l~~~~~L~~~g~ev~~~~~~~~~~~~~~~~~~~ad~li~~~~~~~~~~~~~l~~~-p~Lk~i~~~g~G 96 (351)
T 3jtm_A 18 KNPNFLGCVENALGIRDWLESQGHQYIVTDDKEGPDCELEKHIPDLHVLISTPFHPAYVTAERIKKA-KNLKLLLTAGIG 96 (351)
T ss_dssp HCTTCCSSTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHTTTCSEEEECTTSCCCBCHHHHHHC-SSCCEEEESSSC
T ss_pred cCCCEEEeccchHHHHHHHHHCCCEEEEeCCCCCCHHHHHHHhCCCEEEEEccCCCCCCCHHHHhhC-CCCeEEEEeCee
Confidence 37788888877777788888774 6665432 356789999999999998753 46999999998 599999999999
Q ss_pred cCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhH
Q 006212 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVG 241 (656)
Q Consensus 164 vD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG 241 (656)
+||||+++|+++||.|+|+||+|+.+||||++++||+++|++.++++.+++|+|.... ..+.+|+||||||||+|+||
T Consensus 97 ~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIG~G~IG 176 (351)
T 3jtm_A 97 SDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDLEGKTIGTVGAGRIG 176 (351)
T ss_dssp CTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSHHH
T ss_pred ecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccccCCEEeEEEeCHHH
Confidence 9999999999999999999999999999999999999999999999999999998643 24789999999999999999
Q ss_pred HHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 242 SEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 242 ~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+.+|+++++|||+|++||++. +.+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|
T Consensus 177 ~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~a 256 (351)
T 3jtm_A 177 KLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNKELIGKLKKGVLIVNNA 256 (351)
T ss_dssp HHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSHHHHHHSCTTEEEEECS
T ss_pred HHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcHHHHhcCCCCCEEEECc
Confidence 999999999999999999986 5666777888876 89999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC--C
Q 006212 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL--S 397 (656)
Q Consensus 320 Rg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~--~ 397 (656)
||+++|+++|+++|++|+|+||++|||+.||++.++|||++||+++|||+|+.|.|++.+++..+++|+.+|++|++ +
T Consensus 257 RG~~vde~aL~~aL~~g~i~ga~lDV~~~EP~~~~~pL~~~~nvilTPHia~~t~ea~~~~~~~~~~nl~~~~~g~~~~~ 336 (351)
T 3jtm_A 257 RGAIMERQAVVDAVESGHIGGYSGDVWDPQPAPKDHPWRYMPNQAMTPHTSGTTIDAQLRYAAGTKDMLERYFKGEDFPT 336 (351)
T ss_dssp CGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCGGGSHHHHHHHHHHHHHHHHHHHHTCCCCG
T ss_pred CchhhCHHHHHHHHHhCCccEEEeCCCCCCCCCCCChhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999995 5
Q ss_pred Ccccc
Q 006212 398 ATAIN 402 (656)
Q Consensus 398 ~~~Vn 402 (656)
.+.|+
T Consensus 337 ~~~i~ 341 (351)
T 3jtm_A 337 ENYIV 341 (351)
T ss_dssp GGEEE
T ss_pred ceEEe
Confidence 55554
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-62 Score=514.40 Aligned_cols=304 Identities=42% Similarity=0.675 Sum_probs=283.3
Q ss_pred CCeEEEeCCCCHhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 90 KPTILVSEKLGEAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
|+||++++.+.+...+.|++. .++......+++++.+.+.++|++++++.+++++++++++ |+||+|++.|+|+||||
T Consensus 3 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 81 (307)
T 1wwk_A 3 RMKVLVAAPLHEKAIQVLKDAGLEVIYEEYPDEDRLVELVKDVEAIIVRSKPKVTRRVIESA-PKLKVIARAGVGLDNID 81 (307)
T ss_dssp -CEEEECSCCCHHHHHHHHHTTCEEEECSSCCHHHHHHHSTTCSEEEESSCSCBCHHHHTTC-TTCCEEEESSSCCTTBC
T ss_pred ceEEEEeCCCCHHHHHHHHhCCeEEEeCCCCCHHHHHHHhcCCEEEEEcCCCCCCHHHHhhC-CCCeEEEECCccccccC
Confidence 578999999998888888774 3454444467889999999999999987667999999988 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+|.+..+.+.+|.|+||||||+|+||+++|+++
T Consensus 82 ~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~~A~~l 161 (307)
T 1wwk_A 82 VEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIELEGKTIGIIGFGRIGYQVAKIA 161 (307)
T ss_dssp HHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCCCTTCEEEEECCSHHHHHHHHHH
T ss_pred HHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcccCCceEEEEccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998644668899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
++|||+|++||++...+.+.+.|+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++
T Consensus 162 ~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~arg~~vd~~a 241 (307)
T 1wwk_A 162 NALGMNILLYDPYPNEERAKEVNGKFVDLETLLKESDVVTIHVPLVESTYHLINEERLKLMKKTAILINTSRGPVVDTNA 241 (307)
T ss_dssp HHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHHHSCTTCEEEECSCGGGBCHHH
T ss_pred HHCCCEEEEECCCCChhhHhhcCccccCHHHHHhhCCEEEEecCCChHHhhhcCHHHHhcCCCCeEEEECCCCcccCHHH
Confidence 99999999999987666667788888899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcC
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRG 394 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g 394 (656)
|+++|++|+|+||++|||+.||++.++|||+++|+|+|||++++|.|+++++...+++|+.+|++|
T Consensus 242 L~~aL~~g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g 307 (307)
T 1wwk_A 242 LVKALKEGWIAGAGLDVFEEEPLPKDHPLTKFDNVVLTPHIGASTVEAQERAGVEVAEKVVKILKG 307 (307)
T ss_dssp HHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECSSCTTCBHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCCcEEEEecCCCCCCCCCChHHhCCCEEECCccccCcHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999998899999999999999999999999999999999999999976
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-63 Score=527.40 Aligned_cols=309 Identities=25% Similarity=0.355 Sum_probs=272.0
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHH-HhcCCcceeEEecccccCcc
Q 006212 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVF-EAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l-~~~~~~LK~I~~~g~GvD~i 167 (656)
|+|||++++++++.++.|++.+ ++++.... +...+.+.++|+++++. .++ ++++ +++ |+||+|+++|+|||||
T Consensus 1 m~kil~~~~~~~~~~~~L~~~~~~~~~~~~~--~~~~~~~~~ad~l~~~~-~~~-~~~l~~~~-~~Lk~I~~~~~G~d~i 75 (324)
T 3evt_A 1 MSLVLMAQATKPEQLQQLQTTYPDWTFKDAA--AVTAADYDQIEVMYGNH-PLL-KTILARPT-NQLKFVQVISAGVDYL 75 (324)
T ss_dssp -CEEEECSCCCHHHHHHHHHHCTTCEEEETT--SCCTTTGGGEEEEESCC-THH-HHHHHSTT-CCCCEEECSSSCCTTS
T ss_pred CcEEEEecCCCHHHHHHHHhhCCCeEEecCC--ccChHHhCCcEEEEECC-cCh-HHHHHhhC-CCceEEEECCcccccc
Confidence 4689999999999999998764 44433211 11223467899988764 457 8999 566 6999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHH-HHHHHccccccccccccccCCCEEEEEecChhHHHHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA-DASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~-~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 246 (656)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++++ ++.+++|+|.+.. .+.+|+||||||||+|.||+++|+
T Consensus 76 d~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~~~l~gktvGIiGlG~IG~~vA~ 154 (324)
T 3evt_A 76 PLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TTSTLTGQQLLIYGTGQIGQSLAA 154 (324)
T ss_dssp CHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CCCCSTTCEEEEECCSHHHHHHHH
T ss_pred CHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CCccccCCeEEEECcCHHHHHHHH
Confidence 99999999999999999999999999999999999999999 9999999998753 588999999999999999999999
Q ss_pred HHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 247 ~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
++++|||+|++||++..........+...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 155 ~l~~~G~~V~~~dr~~~~~~~~~~~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 234 (324)
T 3evt_A 155 KASALGMHVIGVNTTGHPADHFHETVAFTATADALATANFIVNALPLTPTTHHLFSTELFQQTKQQPMLINIGRGPAVDT 234 (324)
T ss_dssp HHHHTTCEEEEEESSCCCCTTCSEEEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSHHHHHTCCSCCEEEECSCGGGBCH
T ss_pred HHHhCCCEEEEECCCcchhHhHhhccccCCHHHHHhhCCEEEEcCCCchHHHHhcCHHHHhcCCCCCEEEEcCCChhhhH
Confidence 99999999999998753221111123345899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCC-CCCccccCC
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGE-LSATAINAP 404 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~-~~~~~Vn~p 404 (656)
++|+++|++|+|+||++|||+.||++.++|||++|||++|||+|++|.|+++++...+++|+.+|++|+ ++.|.||.+
T Consensus 235 ~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~~~l~~~~~~~n~V~~~ 313 (324)
T 3evt_A 235 TALMTALDHHQLSMAALDVTEPEPLPTDHPLWQRDDVLITPHISGQIAHFRATVFPIFAANFAQFVKDGTLVRNQVDLN 313 (324)
T ss_dssp HHHHHHHHTTSCSEEEESSCSSSSCCTTCGGGGCSSEEECCSCTTCCCCHHHHHHHHHHHHHHHHHHHSCCCSCBCC--
T ss_pred HHHHHHHHhCCceEEEeCCCCCCCCCCCChhhcCCCEEEcCccccChHHHHHHHHHHHHHHHHHHHhCCCCCCceECcc
Confidence 999999999999999999999999999999999999999999999999999999999999999999755 678999865
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-61 Score=511.22 Aligned_cols=310 Identities=26% Similarity=0.370 Sum_probs=276.0
Q ss_pred CeEEEeCC--CCHhHHHHhhcCC---cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEecccc
Q 006212 91 PTILVSEK--LGEAGLAILRSFG---NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVG 163 (656)
Q Consensus 91 ~~ilv~~~--l~~~~~~~l~~~~---~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~--LK~I~~~g~G 163 (656)
+||++... ..+..++.|++.. ++.+......+++.+.+.++|++++++.++++++++++++ + ||+|+++|+|
T Consensus 2 mkil~~~~~~~~~~~~~~l~~~~p~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G 80 (333)
T 1j4a_A 2 TKIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALA-DNGITKMSLRNVG 80 (333)
T ss_dssp CEEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHH-HTTCCEEEESSSC
T ss_pred cEEEEEecCccCHHHHHHHHhhCCCcEEEECCCCCcHHHHHHhcCCcEEEEcCCCCCCHHHHHhcc-ccCCeEEEECCcc
Confidence 47887653 3345566676533 4544433344678888999999999877789999999884 6 9999999999
Q ss_pred cCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHH
Q 006212 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 164 vD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+....+.++.|+||||||+|.||+.
T Consensus 81 ~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (333)
T 1j4a_A 81 VDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQV 160 (333)
T ss_dssp CTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHH
T ss_pred cccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccCCCCEEEEEccCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999975556788999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|+++++|||+|++||++.... +.+ .+.++ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~~-~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lIn~arg~ 238 (333)
T 1j4a_A 161 FMQIMEGFGAKVITYDIFRNPE-LEK-KGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGP 238 (333)
T ss_dssp HHHHHHHTTCEEEEECSSCCHH-HHH-TTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHHHHCCCEEEEECCCcchh-HHh-hCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhHHHHhhCCCCcEEEECCCCc
Confidence 9999999999999999987544 333 35666 89999999999999999999999999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCC--CCCCC-----------ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEP--PAKDS-----------KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP--~~~~~-----------~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
++|+++|+++|++|+|+||+||||+.|| ++.++ |||++|||++|||+|++|.|+++++...+++|+.
T Consensus 239 ~vd~~aL~~aL~~g~i~gA~LDV~~~EP~~l~~~~~~~~~~~p~~~~L~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (333)
T 1j4a_A 239 LVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAFYTTHAVRNMVVKAFDNNL 318 (333)
T ss_dssp GBCHHHHHHHHHHTSEEEEEESCCTTCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTTCBHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHhCCceEEEEecCCCCCCccccccccccCCccchhhHHhCCCEEECCccccCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 34433 5999999999999999999999999999999999
Q ss_pred HHHcCCCCCccccC
Q 006212 390 GALRGELSATAINA 403 (656)
Q Consensus 390 ~~l~g~~~~~~Vn~ 403 (656)
+|++|+++.+.||.
T Consensus 319 ~~~~g~~~~~~v~~ 332 (333)
T 1j4a_A 319 ELVEGKEAETPVKV 332 (333)
T ss_dssp HHHTTCCCSSBCCC
T ss_pred HHHcCCCCCccccC
Confidence 99999999888874
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-60 Score=503.19 Aligned_cols=305 Identities=31% Similarity=0.481 Sum_probs=282.9
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc-ceeEEecccccCc
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK-LKVVGRAGVGIDN 166 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~-LK~I~~~g~GvD~ 166 (656)
++|++++.+++...+.|++..++.+.. ..+++++.+.++++|++++++.++++++++++++ + ||||+++|+|+||
T Consensus 2 ~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~Lk~I~~~~~G~d~ 80 (320)
T 1gdh_A 2 KKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIP-ENIKCISTYSIGFDH 80 (320)
T ss_dssp CEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSC-TTCCEEEEESSCCTT
T ss_pred cEEEEcCCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHHhCC-ccceEEEECCccccc
Confidence 689999999999899998766766542 2577899999999999999877789999999984 8 9999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChhHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|... .+.+.++.|+||||||+|+||++
T Consensus 81 id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~ 160 (320)
T 1gdh_A 81 IDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 160 (320)
T ss_dssp BCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHH
T ss_pred ccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCcCCCCCEEEEECcCHHHHH
Confidence 999999999999999999999999999999999999999999999999999732 24678999999999999999999
Q ss_pred HHHHHhcCCCEEEEECC-CCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 244 VARRAKGLGMNVIAHDP-YAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~-~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
+|+++++|||+|++||+ +.....+.+.|+..+ ++++++++||+|++|+|++++|+++++++.++.||+|++|||++||
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~~~l~~mk~gailIn~arg 240 (320)
T 1gdh_A 161 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARG 240 (320)
T ss_dssp HHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCG
T ss_pred HHHHHHHCCCEEEEECCCCcChhhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCHHHHhhCCCCcEEEECCCC
Confidence 99999999999999999 876555667788877 8999999999999999999999999999999999999999999999
Q ss_pred chhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCC
Q 006212 322 GVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSA 398 (656)
Q Consensus 322 ~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~ 398 (656)
+++|+++|.++|++|+|+||++|||+.|| +.++|||+++|+|+|||++++|.|+++++...+ +|+.+|++|+++.
T Consensus 241 ~~vd~~aL~~aL~~g~i~gA~lDv~~~eP-~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~-~nl~~~~~g~~~~ 315 (320)
T 1gdh_A 241 DLVDNELVVAALEAGRLAYAGFDVFAGEP-NINEGYYDLPNTFLFPHIGSAATQAREDMAHQA-NDLIDALFGGADM 315 (320)
T ss_dssp GGBCHHHHHHHHHHTSEEEEEESCCTTTT-SCCTTGGGCTTEEECSSCTTCBHHHHHHHHHHH-HHHHHHHHTTSCC
T ss_pred cccCHHHHHHHHHhCCCcEEEEeCCCCCC-CCCChhhhCCCEEECCcCCcCcHHHHHHHHHHH-HHHHHHHcCCCCc
Confidence 99999999999999999999999999999 678999999999999999999999999999999 9999999998653
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-60 Score=503.61 Aligned_cols=304 Identities=36% Similarity=0.531 Sum_probs=283.1
Q ss_pred CCeEEEeCCCCHhHHHHhhcCC-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 90 KPTILVSEKLGEAGLAILRSFG-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
++|||+++++.+...+.|++.+ ++.+....+++++.+.++++|++++++.+++++++++++ |+||+|++.|+|+||||
T Consensus 5 ~mkil~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id 83 (313)
T 2ekl_A 5 TVKALITDPIDEILIKTLREKGIQVDYMPEISKEELLNIIGNYDIIVVRSRTKVTKDVIEKG-KKLKIIARAGIGLDNID 83 (313)
T ss_dssp CCEEEECSCCCHHHHHHHHHTTCEEEECTTCCHHHHHHHGGGCSEEEECSSSCBCHHHHHHC-TTCCEEEECSSCCTTBC
T ss_pred ceEEEEECCCCHHHHHHHHhCCcEEEeCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEEcCCCCCccC
Confidence 3589999999998888888763 554434567889999999999999987778999999998 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHH
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~l 248 (656)
+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|. .+.+.++.|+||||||+|+||+++|+++
T Consensus 84 ~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~--~~~~~~l~g~~vgIIG~G~IG~~~A~~l 161 (313)
T 2ekl_A 84 TEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFK--KIEGLELAGKTIGIVGFGRIGTKVGIIA 161 (313)
T ss_dssp HHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCC--CCCCCCCTTCEEEEESCSHHHHHHHHHH
T ss_pred HHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCC--CCCCCCCCCCEEEEEeeCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999996 3568899999999999999999999999
Q ss_pred hcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHH
Q 006212 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 249 k~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~a 328 (656)
+++||+|++||++.....+.+.|+...++++++++||+|++|+|++++|+++++++.++.||+|++|||++||+++|+++
T Consensus 162 ~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~ell~~aDvVvl~~P~~~~t~~li~~~~l~~mk~ga~lIn~arg~~vd~~a 241 (313)
T 2ekl_A 162 NAMGMKVLAYDILDIREKAEKINAKAVSLEELLKNSDVISLHVTVSKDAKPIIDYPQFELMKDNVIIVNTSRAVAVNGKA 241 (313)
T ss_dssp HHTTCEEEEECSSCCHHHHHHTTCEECCHHHHHHHCSEEEECCCCCTTSCCSBCHHHHHHSCTTEEEEESSCGGGBCHHH
T ss_pred HHCCCEEEEECCCcchhHHHhcCceecCHHHHHhhCCEEEEeccCChHHHHhhCHHHHhcCCCCCEEEECCCCcccCHHH
Confidence 99999999999987655567788887899999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCCeEEEEeeccCCCCCCCCC---ccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 329 LVRALDSGVVAQAALDVFTEEPPAKDS---KLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 329 L~~aL~~g~i~gA~lDV~~~EP~~~~~---~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
|.++|++|+|+||++|||+.||++ ++ |||++||+|+|||++++|.|+++++...+++|+.+|++|++.
T Consensus 242 L~~aL~~g~i~ga~lDv~~~eP~~-~~~~~~L~~~~nviltPH~~~~t~~~~~~~~~~~~~n~~~~~~g~~l 312 (313)
T 2ekl_A 242 LLDYIKKGKVYAYATDVFWNEPPK-EEWELELLKHERVIVTTHIGAQTKEAQKRVAEMTTQNLLNAMKELGM 312 (313)
T ss_dssp HHHHHHTTCEEEEEESCCSSSSCC-SHHHHHHHHSTTEEECCSCTTCSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCcEEEEecCCCCCCC-CcccchHhhCCCEEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999987 66 999999999999999999999999999999999999999864
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-61 Score=512.10 Aligned_cols=310 Identities=27% Similarity=0.404 Sum_probs=274.7
Q ss_pred eEEEeC--CCCHhHHHHhhcC-C-cEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEecccccC
Q 006212 92 TILVSE--KLGEAGLAILRSF-G-NVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVGID 165 (656)
Q Consensus 92 ~ilv~~--~l~~~~~~~l~~~-~-~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~--LK~I~~~g~GvD 165 (656)
||++++ +.....++.+.+. . ++.+......+++.+.++++|++++++.++++++++++++ + ||+|+++|+|+|
T Consensus 2 kil~~~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G~d 80 (333)
T 1dxy_A 2 KIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMH-AYGIKFLTIRNVGTD 80 (333)
T ss_dssp EEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHH-HTTCCEEEESSSCCT
T ss_pred EEEEEeccccCHHHHHHHHHhCCeEEEEcCCCChHHHHHHhcCCeEEEEcCCCCCCHHHHHhCc-ccCceEEEEcCcccC
Confidence 678754 4455566666442 2 4554443345678888999999999877789999999884 6 999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccc-ccccccccCCCEEEEEecChhHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR-SKYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+ ....+.+|.|+||||||+|.||+.+
T Consensus 81 ~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~~ 160 (333)
T 1dxy_A 81 NIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVA 160 (333)
T ss_dssp TBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccCCCCCEEEEECcCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999964 3456889999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
|+++++|||+|++||++.... +. .++.+.++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++
T Consensus 161 A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~P~~~~t~~li~~~~l~~mk~ga~lIn~srg~~v 238 (333)
T 1dxy_A 161 IKLFKGFGAKVIAYDPYPMKG-DH-PDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLI 238 (333)
T ss_dssp HHHHHHTTCEEEEECSSCCSS-CC-TTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSB
T ss_pred HHHHHHCCCEEEEECCCcchh-hH-hccccCCHHHHHhcCCEEEEcCCCchhHHHHhCHHHHhhCCCCcEEEECCCCccc
Confidence 999999999999999986432 22 2355679999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCC--C--------CC---CccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPP--A--------KD---SKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~--~--------~~---~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~ 391 (656)
|+++|+++|++|+|+||+||||+.||+ + .+ +|||++|||++|||+|++|.|+++++...+++|+.+|
T Consensus 239 d~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~pL~~~~nvi~TPHia~~t~e~~~~~~~~~~~nl~~~ 318 (333)
T 1dxy_A 239 DTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYYTETAVHNMVYFSLQHLVDF 318 (333)
T ss_dssp CHHHHHHHHHTTSEEEEEESSCTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCccEEEEecCCCCCCcccccccccccCccchhHHhcCCCEEECCccccChHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999983 1 12 5799999999999999999999999999999999999
Q ss_pred HcCCCCCccccCC
Q 006212 392 LRGELSATAINAP 404 (656)
Q Consensus 392 l~g~~~~~~Vn~p 404 (656)
++|+++.+.||.|
T Consensus 319 ~~g~~~~~~v~~~ 331 (333)
T 1dxy_A 319 LTKGETSTEVTGP 331 (333)
T ss_dssp HHHSCCTTEECC-
T ss_pred HcCCCCCceeCCC
Confidence 9999999999976
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-60 Score=498.97 Aligned_cols=304 Identities=34% Similarity=0.493 Sum_probs=279.7
Q ss_pred CeEEEeCCCCHhHHHHhhcC-CcEEEec--CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 91 PTILVSEKLGEAGLAILRSF-GNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~-~~v~~~~--~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
||||+++.++++.++.|++. .++.+.. ..+.+++.+.++++|+++++..+++++++++++ |+||+|+++|+|+|||
T Consensus 1 ~~vl~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~i~~~~~G~d~i 79 (311)
T 2cuk_A 1 MRVLVTRTLPGKALDRLRERGLEVEVHRGLFLPKAELLKRVEGAVGLIPTVEDRIDAEVMDRA-KGLKVIACYSVGVDHV 79 (311)
T ss_dssp CEEEESSCCSSSTTHHHHHTTCEEEECCSSCCCHHHHHHHHTTCSEEECCTTSCBCHHHHHHS-TTCCEEECSSSCCTTB
T ss_pred CEEEEeCCCCHHHHHHHHhcCCeEEEecCCCCCHHHHHHHhcCCeEEEEcCCCCCCHHHHhhC-CCCeEEEECCcCcccc
Confidence 57999999988888888887 5776542 347889999999999999887678999999998 5999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChhHHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~v 244 (656)
|+++|+++||.|+|+||+|+.+||||++++||+++|+++.+++.+++|.|.+. .+.+.++.|+||||||+|.||+.+
T Consensus 80 d~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~l~g~~vgIIG~G~IG~~~ 159 (311)
T 2cuk_A 80 DLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLDLQGLTLGLVGMGRIGQAV 159 (311)
T ss_dssp CHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHH
T ss_pred CHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcCCCCCEEEEEEECHHHHHH
Confidence 99999999999999999999999999999999999999999999999999642 235789999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
|+++++|||+|++||++..... +...++++++++||+|++|+|++++|+++++++.++.||+|+++||++||+++
T Consensus 160 A~~l~~~G~~V~~~d~~~~~~~-----~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~~~l~~mk~ga~lin~srg~~v 234 (311)
T 2cuk_A 160 AKRALAFGMRVVYHARTPKPLP-----YPFLSLEELLKEADVVSLHTPLTPETHRLLNRERLFAMKRGAILLNTARGALV 234 (311)
T ss_dssp HHHHHHTTCEEEEECSSCCSSS-----SCBCCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHTTSCTTCEEEECSCGGGB
T ss_pred HHHHHHCCCEEEEECCCCcccc-----cccCCHHHHHhhCCEEEEeCCCChHHHhhcCHHHHhhCCCCcEEEECCCCCcc
Confidence 9999999999999999863322 34568999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccc
Q 006212 325 DEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAI 401 (656)
Q Consensus 325 de~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~V 401 (656)
|+++|.++|+ |+|+||++|||+.||++.++|||+++|+|+|||++++|.|+++++...+++|+.+|++|+++.+.|
T Consensus 235 d~~aL~~aL~-g~i~ga~lDv~~~eP~~~~~~L~~~~nviltPh~~~~t~~~~~~~~~~~~~nl~~~~~g~~~~~~v 310 (311)
T 2cuk_A 235 DTEALVEALR-GHLFGAGLDVTDPEPLPPGHPLYALPNAVITPHIGSAGRTTRERMAEVAVENLLAVLEGREPPNPV 310 (311)
T ss_dssp CHHHHHHHHT-TTSSEEEESSCSSSSCCTTSGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHTTCCCSSBC
T ss_pred CHHHHHHHHh-CcCCEEEEeeCCCCCCCCCChhhhCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCcc
Confidence 9999999999 999999999999999888999999999999999999999999999999999999999999877655
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-60 Score=507.34 Aligned_cols=308 Identities=24% Similarity=0.335 Sum_probs=274.6
Q ss_pred eEEEeC--CCCHhHHHHhhcCC--cEEEec-CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCc--ceeEEeccccc
Q 006212 92 TILVSE--KLGEAGLAILRSFG--NVECLY-DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGK--LKVVGRAGVGI 164 (656)
Q Consensus 92 ~ilv~~--~l~~~~~~~l~~~~--~v~~~~-~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~--LK~I~~~g~Gv 164 (656)
||++++ ++.+..++.+.+.. ++.+.. ..+++++.+.++++|++++++.++++++++++++ + ||+|+++|+|+
T Consensus 2 ki~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~~-~~~Lk~I~~~~~G~ 80 (331)
T 1xdw_A 2 KVLCYGVRDVELPIFEACNKEFGYDIKCVPDYLNTKETAEMAAGFDAVILRGNCFANKQNLDIYK-KLGVKYILTRTAGT 80 (331)
T ss_dssp EEEECSCCTTTHHHHHHHGGGTCCEEEECSCCSCSHHHHHTTTTCSEEEECTTCCBCHHHHHHHH-HHTCCEEEESSSCC
T ss_pred EEEEEecCccCHHHHHHHHHhcCeEEEECCCCCCHHHHHHHhcCCeEEEEeCCCCCCHHHHhhCc-ccCceEEEEccccc
Confidence 688854 45566677775533 344433 2355888899999999999877889999999884 7 99999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccc-ccccccccCCCEEEEEecChhHHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR-SKYVGVSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~-~~~~g~~l~gktvGIIGlG~IG~~ 243 (656)
||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.. ....+.++.|+||||||+|.||+.
T Consensus 81 d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIiG~G~IG~~ 160 (331)
T 1xdw_A 81 DHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKEVRNCTVGVVGLGRIGRV 160 (331)
T ss_dssp TTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCCGGGSEEEEECCSHHHHH
T ss_pred cccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccCCCCCEEEEECcCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999964 345688999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|+++++|||+|++||++.... +. .++.+.++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||++
T Consensus 161 ~A~~l~~~G~~V~~~d~~~~~~-~~-~~~~~~~l~ell~~aDvV~~~~p~t~~t~~li~~~~l~~mk~ga~lin~srg~~ 238 (331)
T 1xdw_A 161 AAQIFHGMGATVIGEDVFEIKG-IE-DYCTQVSLDEVLEKSDIITIHAPYIKENGAVVTRDFLKKMKDGAILVNCARGQL 238 (331)
T ss_dssp HHHHHHHTTCEEEEECSSCCCS-CT-TTCEECCHHHHHHHCSEEEECCCCCTTTCCSBCHHHHHTSCTTEEEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCccHH-HH-hccccCCHHHHHhhCCEEEEecCCchHHHHHhCHHHHhhCCCCcEEEECCCccc
Confidence 9999999999999999986432 22 235667999999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCC--CCC-------C----ccccC-CcEEEcCCCCCCcHHHHHHHHHHHHHHHH
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPP--AKD-------S----KLVQH-ENVTVTPHLGASTKEAQEGVAIEIAEAVV 389 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~--~~~-------~----~L~~~-~nvilTPH~g~~T~ea~~~~~~~~~~~i~ 389 (656)
+|+++|+++|++|+|+||+||||+.||+ +.+ + |||++ |||++|||+|++|.|+++++...+++|+.
T Consensus 239 vd~~aL~~aL~~g~i~gA~LDV~~~EP~~~~~~~~~~~~~~~~~~~L~~~~~nvilTPHia~~t~~~~~~~~~~~~~nl~ 318 (331)
T 1xdw_A 239 VDTEAVIEAVESGKLGGYGCDVLDGEASVFGKDLEGQKLENPLFEKLVDLYPRVLITPHLGSYTDEAVKNMVEVSYQNLK 318 (331)
T ss_dssp BCHHHHHHHHHHTSEEEEEESCCTTGGGTTTCCCTTSCCSSHHHHHHHHTTTTEEECCSCTTCSHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCCceEEEEecCCCCCCcccccccccccCccchHHHHhCCCCEEEcCccccChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999994 222 3 79999 99999999999999999999999999999
Q ss_pred HHHcCCCCCcccc
Q 006212 390 GALRGELSATAIN 402 (656)
Q Consensus 390 ~~l~g~~~~~~Vn 402 (656)
+|++|+++.+.||
T Consensus 319 ~~~~g~~~~~~v~ 331 (331)
T 1xdw_A 319 DLAETGDCPNKIK 331 (331)
T ss_dssp HHHHHSCCTTBCC
T ss_pred HHHcCCCCCCCCC
Confidence 9999998888776
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-60 Score=513.55 Aligned_cols=313 Identities=27% Similarity=0.353 Sum_probs=283.6
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcCC--CCCCHHHHHhcCCcceeEEecccc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRSG--TKVTRSVFEAANGKLKVVGRAGVG 163 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~-~v~~~~~--~~~eel~~~i~~~d~liv~~~--~~v~~e~l~~~~~~LK~I~~~g~G 163 (656)
.+|+||+.+...+...+.|++.+ ++.+... .+.+++.+.+.++|+++++.. +++++++++++ |+||+|+++|+|
T Consensus 16 ~~~~vl~~d~~~~~~~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G 94 (364)
T 2j6i_A 16 DEEKLYGCTENKLGIANWLKDQGHELITTSDKEGGNSVLDQHIPDADIIITTPFHPAYITKERIDKA-KKLKLVVVAGVG 94 (364)
T ss_dssp HCTTCTTBTTTGGGCHHHHHHTTCEEEEESCCSSTTSHHHHHGGGCSEEEECTTSCCCBCHHHHHHC-TTCCEEEESSSC
T ss_pred cCceEEEecCccHHHHHHHHhCCCEEEEcCCCCCCHHHHHHHhhCCeEEEecCcCCCCCCHHHHhhC-CCCeEEEECCcc
Confidence 47889999998888888887754 6655432 246789999999999998653 36999999998 599999999999
Q ss_pred cCccchhhHHhc--CceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecCh
Q 006212 164 IDNVDLQAATEF--GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 164 vD~iD~~aa~~~--GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~ 239 (656)
+||||+++|+++ ||.|+|+||+|+.+||||++++||+++|+++.+++.+++|+|.+.. ..+.+|+|+||||||+|+
T Consensus 95 ~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~g~tvgIIG~G~ 174 (364)
T 2j6i_A 95 SDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAYDIEGKTIATIGAGR 174 (364)
T ss_dssp CTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCSTTCEEEEECCSH
T ss_pred cccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcccCCCCEEEEECcCH
Confidence 999999999999 9999999999999999999999999999999999999999997532 257899999999999999
Q ss_pred hHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 006212 240 VGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (656)
Q Consensus 240 IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI 316 (656)
||+.+|+++++|||+ |++||++. ..+.+.+.|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++||
T Consensus 175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~ga~lI 254 (364)
T 2j6i_A 175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINKELLSKFKKGAWLV 254 (364)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCHHHHhhCCCCCEEE
Confidence 999999999999997 99999876 5555667787765 89999999999999999999999999999999999999999
Q ss_pred EcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccC--C---cEEEcCCCCCCcHHHHHHHHHHHHHHHHHH
Q 006212 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH--E---NVTVTPHLGASTKEAQEGVAIEIAEAVVGA 391 (656)
Q Consensus 317 NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~--~---nvilTPH~g~~T~ea~~~~~~~~~~~i~~~ 391 (656)
|++||+++|+++|+++|++|+|+||+||||+.||++.++|||.+ | |+++|||+|++|.|++.+++..+++|+.+|
T Consensus 255 n~arG~~vd~~aL~~aL~~g~i~gA~LDVf~~EP~~~~~pL~~~~~~~~~nvilTPHia~~t~e~~~~~~~~~~~nl~~~ 334 (364)
T 2j6i_A 255 NTARGAICVAEDVAAALESGQLRGYGGDVWFPQPAPKDHPWRDMRNKYGAGNAMTPHYSGTTLDAQTRYAQGTVNILESF 334 (364)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCHHHHCCCTTSCCEEECCSCGGGSHHHHHHHHHHHHHHHHHH
T ss_pred ECCCCchhCHHHHHHHHHcCCCcEEEEecCCCCCCCCCChHHhccCCccCcEEECCccCcCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999889999999 9 999999999999999999999999999999
Q ss_pred HcCC---CCCcccc
Q 006212 392 LRGE---LSATAIN 402 (656)
Q Consensus 392 l~g~---~~~~~Vn 402 (656)
++|+ .+.|+|+
T Consensus 335 ~~g~~~~~~~n~v~ 348 (364)
T 2j6i_A 335 FTGKFDYRPQDIIL 348 (364)
T ss_dssp HTTCCCCCGGGEEE
T ss_pred HcCCCCCCCCceec
Confidence 9998 4455554
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-59 Score=504.35 Aligned_cols=320 Identities=26% Similarity=0.357 Sum_probs=289.9
Q ss_pred CCCeEEEeCC-C--CHhHHHHhhcCCcEEEecCCCHhHHHhhcC-----CCeEEEEcC------CCCCCHHHHHhcCCcc
Q 006212 89 PKPTILVSEK-L--GEAGLAILRSFGNVECLYDLSPEALCEKIS-----QCDALIVRS------GTKVTRSVFEAANGKL 154 (656)
Q Consensus 89 ~~~~ilv~~~-l--~~~~~~~l~~~~~v~~~~~~~~eel~~~i~-----~~d~liv~~------~~~v~~e~l~~~~~~L 154 (656)
.||+||++++ + .+..++.|++.+++......+++++.+.++ ++|++++++ .+++++++|++++++|
T Consensus 2 ~~~~vl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~L 81 (348)
T 2w2k_A 2 PRPRVLLLGDPARHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADLISHLPSSL 81 (348)
T ss_dssp CCCEEEECSSCCSSCHHHHHHHHHHSEEEECCCCCHHHHHHHHHTTTTCCCSEEEECSTTTTGGGCCBCHHHHTTSCTTC
T ss_pred CCcEEEEECCccccChHHHHHHHhcceEEecCCCCHHHHHHHhhhcccCCeEEEEEcccccccccCCCCHHHHHhcccCc
Confidence 3689999998 5 356778887767776655568899988887 899988752 3579999999885469
Q ss_pred eeEEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccc---ccccc----cccccc
Q 006212 155 KVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGK---WLRSK----YVGVSL 227 (656)
Q Consensus 155 K~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~---W~~~~----~~g~~l 227 (656)
|+|+++|+|+||||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|+ |.+.. ..|.+|
T Consensus 82 k~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~~~~~~~~~l 161 (348)
T 2w2k_A 82 KVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHLEIGKSAHNP 161 (348)
T ss_dssp CEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHHHHHTTCCCS
T ss_pred eEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccccccccCcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999 94321 357899
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+|+||||||+|.||+.+|++++ +|||+|++||++. ..+.+.+.|+..+ ++++++++||+|++|+|.+++|+++++++
T Consensus 162 ~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~~ 241 (348)
T 2w2k_A 162 RGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDEA 241 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCHH
T ss_pred CCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhHH
Confidence 9999999999999999999999 9999999999986 4455566788777 89999999999999999999999999999
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHH
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEI 384 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~ 384 (656)
.++.||+|++|||++||+++|+++|.++|++|+|+||++|||+.|| +.+++||+++|||+|||+|+.|.|++.++...+
T Consensus 242 ~l~~mk~gailin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~EP-~~~~~L~~~~nviltPH~~~~t~e~~~~~~~~~ 320 (348)
T 2w2k_A 242 FFAAMKPGSRIVNTARGPVISQDALIAALKSGKLLSAGLDVHEFEP-QVSKELIEMKHVTLTTHIGGVAIETFHEFERLT 320 (348)
T ss_dssp HHHHSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTTTT-SCCHHHHTSSSEEECCSCTTCSHHHHHHHHHHH
T ss_pred HHhcCCCCCEEEECCCCchhCHHHHHHHHHhCCceEEEeccCCCCC-CCCchhhcCCCEEEcCcCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998 567899999999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCccccCCCCChh
Q 006212 385 AEAVVGALRGELSATAINAPMVPSE 409 (656)
Q Consensus 385 ~~~i~~~l~g~~~~~~Vn~p~~~~~ 409 (656)
++|+.+|++|+.+.+.||.+.+.++
T Consensus 321 ~~ni~~~~~g~~~~~~v~~~~~~~~ 345 (348)
T 2w2k_A 321 MTNIDRFLLQGKPLLTPAGKVFAPS 345 (348)
T ss_dssp HHHHHHHHHTCCCCSSBCSCCCCCC
T ss_pred HHHHHHHHcCCCCcceecccccCcc
Confidence 9999999999999999999877654
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-59 Score=510.94 Aligned_cols=297 Identities=26% Similarity=0.371 Sum_probs=271.3
Q ss_pred HHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCcee
Q 006212 105 AILRSFG-NVECLYD--LSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLV 179 (656)
Q Consensus 105 ~~l~~~~-~v~~~~~--~~~eel~~~i~~~d~liv~~--~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V 179 (656)
+.|++.+ ++.+... .+++++.+.+.++|+++++. .+++++++|+++ |+||+|+++|+|+||||+++|+++||.|
T Consensus 61 ~~l~~~g~~v~~~~~~~~~~~~l~~~l~~ad~li~~~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~iD~~aa~~~gI~V 139 (393)
T 2nac_A 61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVTV 139 (393)
T ss_dssp HHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCEE
T ss_pred HHHHhCCCEEEEecCCCCCHHHHHHhccCCCEEEEcCccCCCCCHHHHhhC-CCCcEEEEcCccccccCHHHHhcCCEEE
Confidence 4666654 5655332 34567889999999999874 357999999998 5999999999999999999999999999
Q ss_pred ecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 180 VNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 180 ~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
+|+|++|+.+||||++++||+++|++.++++.+++|+|.... ..+.+|+||||||||+|+||+.+|+++++|||+|++
T Consensus 140 ~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l~gktvGIIGlG~IG~~vA~~l~a~G~~V~~ 219 (393)
T 2nac_A 140 AEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHY 219 (393)
T ss_dssp EECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEE
T ss_pred EeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEE
Confidence 999999999999999999999999999999999999997532 246899999999999999999999999999999999
Q ss_pred ECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 258 HDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 258 ~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
||++. ..+.+.+.|+.. .++++++++||+|++|+|++++|+++++++.|+.||+|++|||++||+++|+++|+++|++
T Consensus 220 ~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~~~l~~mk~gailIN~aRG~~vde~aL~~aL~~ 299 (393)
T 2nac_A 220 TDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALES 299 (393)
T ss_dssp ECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHT
T ss_pred EcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhHHHHhhCCCCCEEEECCCchHhhHHHHHHHHHc
Confidence 99986 455566778876 4899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 336 GVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 336 g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
|+|+||++|||+.||++.++|||++||+++|||+|+.|.|+++++...+++|+.+|++|+++.+.++
T Consensus 300 g~i~gA~lDV~~~EP~~~~~pL~~~~nvilTPHia~~T~e~~~~~~~~~~~nl~~~~~G~~~~~~~~ 366 (393)
T 2nac_A 300 GRLAGYAGDVWFPQPAPKDHPWRTMPYNGMTPHISGTTLTAQARYAAGTREILECFFEGRPIRDEYL 366 (393)
T ss_dssp TSEEEEEESCCSSSSCCTTCGGGTSTTBCCCCSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGE
T ss_pred CCeeEEEEEecCCCCCCCCChhHcCCCEEECCCCCcCcHHHHHHHHHHHHHHHHHHHcCCCCcceeE
Confidence 9999999999999999889999999999999999999999999999999999999999998888665
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-59 Score=499.22 Aligned_cols=312 Identities=31% Similarity=0.502 Sum_probs=289.4
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccch
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDL 169 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~ 169 (656)
|+|||+++.+.+..++.|++.+++++....+.+++.+.+.++|++++++.+++++++++++ |+||+|+++|+|+||||+
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~id~ 80 (333)
T 2d0i_A 2 RPKVGVLLKMKREALEELKKYADVEIILYPSGEELKGVIGRFDGIIVSPTTKITREVLENA-ERLKVISCHSAGYDNIDL 80 (333)
T ss_dssp CSEEEECSCCCHHHHHHHHTTSEEEECCSCCHHHHHHHGGGCSEEEECTTSCBCHHHHTTC-TTCCEEEESSSCCTTBCH
T ss_pred CcEEEEECCCCHHHHHHHHhcCCEEEeCCCCHHHHHHHhcCCEEEEECCCCCCCHHHHhhC-CCceEEEECCcccccccH
Confidence 5789999999999999998876766543357889999999999999888788999999988 599999999999999999
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc--cccc----cccCCCEEEEEecChhHHH
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS--KYVG----VSLVGKTLAVMGFGKVGSE 243 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~--~~~g----~~l~gktvGIIGlG~IG~~ 243 (656)
++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+. ...| .+|.|+||||||+|.||+.
T Consensus 81 ~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~l~g~~vgIIG~G~iG~~ 160 (333)
T 2d0i_A 81 EEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTGFKRIESLYGKKVGILGMGAIGKA 160 (333)
T ss_dssp HHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTTSCCCCCSTTCEEEEECCSHHHHH
T ss_pred HHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccCCcccCCCCcCEEEEEccCHHHHH
Confidence 999999999999999999999999999999999999999999999999642 2346 7999999999999999999
Q ss_pred HHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 244 VARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 244 vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
+|++++++||+|++||++...+.+.+.|+...++++++++||+|++|+|.+++|+++++++.++.||+| +|||++||.+
T Consensus 161 vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~e~l~~aDiVil~vp~~~~t~~~i~~~~~~~mk~g-ilin~srg~~ 239 (333)
T 2d0i_A 161 IARRLIPFGVKLYYWSRHRKVNVEKELKARYMDIDELLEKSDIVILALPLTRDTYHIINEERVKKLEGK-YLVNIGRGAL 239 (333)
T ss_dssp HHHHHGGGTCEEEEECSSCCHHHHHHHTEEECCHHHHHHHCSEEEECCCCCTTTTTSBCHHHHHHTBTC-EEEECSCGGG
T ss_pred HHHHHHHCCCEEEEECCCcchhhhhhcCceecCHHHHHhhCCEEEEcCCCChHHHHHhCHHHHhhCCCC-EEEECCCCcc
Confidence 999999999999999998765555667877779999999999999999999999999999899999999 9999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCC-cEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE-NVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~-nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+|+++|.++|++++|+|||+|||+.||++ ++|||+++ |||+|||+++.|.|+++++...+++|+.+|++|+++.+.||
T Consensus 240 vd~~aL~~aL~~~~i~gaglDv~~~EP~~-~~~L~~~~~nviltPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~~v~ 318 (333)
T 2d0i_A 240 VDEKAVTEAIKQGKLKGYATDVFEKEPVR-EHELFKYEWETVLTPHYAGLALEAQEDVGFRAVENLLKVLRGEVPEDLVN 318 (333)
T ss_dssp BCHHHHHHHHHTTCBCEEEESCCSSSSCS-CCGGGGCTTTEEECCSCTTCCHHHHHHHHHHHHHHHHHHHTTCCCTTBSC
T ss_pred cCHHHHHHHHHcCCceEEEecCCCCCCCC-CchHHcCCCCEEEcCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcCccC
Confidence 99999999999999999999999999987 89999999 99999999999999999999999999999999999999998
Q ss_pred CC
Q 006212 403 AP 404 (656)
Q Consensus 403 ~p 404 (656)
..
T Consensus 319 ~~ 320 (333)
T 2d0i_A 319 KE 320 (333)
T ss_dssp TT
T ss_pred HH
Confidence 54
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-59 Score=497.95 Aligned_cols=309 Identities=25% Similarity=0.352 Sum_probs=281.5
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCcEEEec-CCCHhH-HHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 88 TPKPTILVSEKLGEAGLAILRSFGNVECLY-DLSPEA-LCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l~~~~~v~~~~-~~~~ee-l~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
|.|++||+++++.+..++.|++.+++.... ..+.++ +.+.++++|++++++.+++++++++++ |+||+|+++|+|+|
T Consensus 21 m~~~~vl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~l~~~-p~Lk~I~~~~~G~d 99 (333)
T 3ba1_A 21 MEAIGVLMMCPMSTYLEQELDKRFKLFRYWTQPAQRDFLALQAESIRAVVGNSNAGADAELIDAL-PKLEIVSSFSVGLD 99 (333)
T ss_dssp -CCCEEEECSCCCHHHHHHHHHHSEEEEGGGCSSHHHHHHHHTTTEEEEEECSSSCBCHHHHHHC-TTCCEEEESSSCCT
T ss_pred CCCCEEEEeCCCCHHHHHHHHhcCCEEEecCCCChHHHHHHHhCCCEEEEEcCCCCCCHHHHhhC-CCCcEEEEcCcccc
Confidence 457899999999999999998766766543 234444 667789999999987778999999998 59999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc-ccccccCCCEEEEEecChhHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK-YVGVSLVGKTLAVMGFGKVGSEV 244 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~-~~g~~l~gktvGIIGlG~IG~~v 244 (656)
|||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|.+.. ..|.+++||||||||+|.||+.+
T Consensus 100 ~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~g~~vgIIG~G~iG~~v 179 (333)
T 3ba1_A 100 KVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFSGKRVGIIGLGRIGLAV 179 (333)
T ss_dssp TBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCTTCCEEEECCSHHHHHH
T ss_pred ccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccCCCEEEEECCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999997533 35789999999999999999999
Q ss_pred HHHHhcCCCEEEEECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 245 ARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
|++++++||+|++||++.... .|+. ..++++++++||+|++|+|.+++|+++++++.++.||+|++|||++||.+
T Consensus 180 A~~l~~~G~~V~~~dr~~~~~----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~~~l~~mk~gailIn~srG~~ 255 (333)
T 3ba1_A 180 AERAEAFDCPISYFSRSKKPN----TNYTYYGSVVELASNSDILVVACPLTPETTHIINREVIDALGPKGVLINIGRGPH 255 (333)
T ss_dssp HHHHHTTTCCEEEECSSCCTT----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCHHHHHHHCTTCEEEECSCGGG
T ss_pred HHHHHHCCCEEEEECCCchhc----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhHHHHhcCCCCCEEEECCCCch
Confidence 999999999999999886322 2554 45899999999999999999999999999999999999999999999999
Q ss_pred hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 324 IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 324 vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
+|+++|.++|++|+++||++|||+.||++. +|||+++|||+|||+|+.|.|+++++...+++|+.+|++|+++.+.||
T Consensus 256 vd~~aL~~aL~~g~i~ga~lDv~~~EP~~~-~~L~~~~nviltPH~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~Vn 333 (333)
T 3ba1_A 256 VDEPELVSALVEGRLGGAGLDVFEREPEVP-EKLFGLENVVLLPHVGSGTVETRKVMADLVVGNLEAHFSGKPLLTPVV 333 (333)
T ss_dssp BCHHHHHHHHHHTSSCEEEESCCTTTTCCC-GGGGGCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHHTCCCSSBCC
T ss_pred hCHHHHHHHHHcCCCeEEEEecCCCCCCCc-chhhcCCCEEECCcCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCCCCC
Confidence 999999999999999999999999999765 899999999999999999999999999999999999999999888876
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-59 Score=497.71 Aligned_cols=317 Identities=29% Similarity=0.477 Sum_probs=279.6
Q ss_pred ccCCCCCeEEEeCCCC-HhHHHHhhcCCcEEEecCCCHhHHHhhc-CCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 85 QAVTPKPTILVSEKLG-EAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 85 ~~~~~~~~ilv~~~l~-~~~~~~l~~~~~v~~~~~~~~eel~~~i-~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
+.++.||+|++.+... +...+.++...++......+.+|+.+.+ .++|+++++..+++++++++++ |+||+|+++|+
T Consensus 16 ~~~~~kp~i~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~ 94 (347)
T 1mx3_A 16 PRGSHMPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGS 94 (347)
T ss_dssp -----CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSS
T ss_pred CCCCCCCEEEEEcCCcchhhHHHhhccceEEecCCCCHHHHHHHhhcCCeEEEEeCCCCCCHHHHhhC-CCCCEEEEccc
Confidence 3445689999987532 2236777776777766556777777764 7899988887778999999998 59999999999
Q ss_pred ccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc------ccc-cccCCCEEEEE
Q 006212 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK------YVG-VSLVGKTLAVM 235 (656)
Q Consensus 163 GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~------~~g-~~l~gktvGII 235 (656)
||||||+++|+++||.|+|+||+++.+||||++++||+++|+++.+++.+++|+|.... ..| .+++|+|||||
T Consensus 95 G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~~~~~l~g~tvGII 174 (347)
T 1mx3_A 95 GFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGII 174 (347)
T ss_dssp CCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEE
T ss_pred ccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccccccCccCCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999996421 113 68999999999
Q ss_pred ecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcE
Q 006212 236 GFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (656)
Q Consensus 236 GlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gai 314 (656)
|+|.||+.+|+++++|||+|++||++.....+...|+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++
T Consensus 175 G~G~IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~~~l~~mk~gai 254 (347)
T 1mx3_A 175 GLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAF 254 (347)
T ss_dssp CCSHHHHHHHHHHHTTTCEEEEECTTSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEE
T ss_pred eECHHHHHHHHHHHHCCCEEEEECCCcchhhHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHHHHHhcCCCCCE
Confidence 9999999999999999999999999875445566787665 899999999999999999999999999999999999999
Q ss_pred EEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC-CCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHc
Q 006212 315 IVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALR 393 (656)
Q Consensus 315 lINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~-~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~ 393 (656)
|||++||+++|+++|+++|++|+|+||++|||+.||++ .++||+.++|+++|||+++.|.++++++...+++|+.+|++
T Consensus 255 lIN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~~L~~~~nvi~tPHia~~t~~~~~~~~~~~~~ni~~~~~ 334 (347)
T 1mx3_A 255 LVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAIT 334 (347)
T ss_dssp EEECSCTTSBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTSSTTTTCSSEEECSSCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCChHHhHHHHHHHHHhCCCcEEEEeecccCCCCCCCchHHhCCCEEEEchHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999976 46899999999999999999999999999999999999999
Q ss_pred CCCCC---cccc
Q 006212 394 GELSA---TAIN 402 (656)
Q Consensus 394 g~~~~---~~Vn 402 (656)
|+.+. ++||
T Consensus 335 g~~~~~l~~~v~ 346 (347)
T 1mx3_A 335 GRIPDSLKNCVN 346 (347)
T ss_dssp SCTTTTCSSBCC
T ss_pred CCCCcccCCCCC
Confidence 98765 5554
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-58 Score=491.75 Aligned_cols=312 Identities=35% Similarity=0.602 Sum_probs=288.5
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEecC---CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~~---~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
|++||+++.+.+..++.|++.+++.+... .+++++.+.+.++|++++++.+++++++++++ |+||||++.|+|+||
T Consensus 2 ~~~il~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~-~~Lk~I~~~~~G~d~ 80 (334)
T 2dbq_A 2 KPKVFITREIPEVGIKMLEDEFEVEVWGDEKEIPREILLKKVKEVDALVTMLSERIDKEVFENA-PKLRIVANYAVGYDN 80 (334)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCCSSCCCHHHHHHHTTSCSEEEECTTSCBCHHHHHTC-TTCCEEEESSSCCTT
T ss_pred CcEEEEecCCCHHHHHHHHhcCCEEEecCCCCCCHHHHHHHhcCcEEEEEcCCCCCCHHHHhhC-CCceEEEECCccccc
Confidence 46899999999988998887767765432 47889999999999999987778999999988 599999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccc----c---ccccccccCCCEEEEEecCh
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL----R---SKYVGVSLVGKTLAVMGFGK 239 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~----~---~~~~g~~l~gktvGIIGlG~ 239 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+++++++.+++|.|. . ..+.|.++.|+||||||+|.
T Consensus 81 id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~l~g~~vgIIG~G~ 160 (334)
T 2dbq_A 81 IDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWFLGYDVYGKTIGIIGLGR 160 (334)
T ss_dssp BCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTTCCCCCTTCEEEEECCSH
T ss_pred ccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccccccCCCCCEEEEEccCH
Confidence 9999999999999999999999999999999999999999999999999996 2 12347899999999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
||+.+|++++++||+|++||++...+.+...|+...++++++++||+|++|+|.+++|+++++++.+..||+|++|||++
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~g~~~~~l~~~l~~aDvVil~vp~~~~t~~~i~~~~~~~mk~~ailIn~s 240 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKEEVERELNAEFKPLEDLLRESDFVVLAVPLTRETYHLINEERLKLMKKTAILINIA 240 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHHHHHHCCEECCHHHHHHHCSEEEECCCCCTTTTTCBCHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhhHhhcCcccCCHHHHHhhCCEEEECCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 99999999999999999999987555555678877799999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 320 Rg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
||.++|+++|.++|++|+++||++|||+.|| +.++|||+++|||+|||+|+.|.++.+++...+++|+.+|++|+++.+
T Consensus 241 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~EP-~~~~~L~~~~~vi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~ 319 (334)
T 2dbq_A 241 RGKVVDTNALVKALKEGWIAGAGLDVFEEEP-YYNEELFKLDNVVLTPHIGSASFGAREGMAELVAKNLIAFKRGEIPPT 319 (334)
T ss_dssp CGGGBCHHHHHHHHHHTSSSEEEESCCSSSS-CCCHHHHHCTTEEECSSCTTCSHHHHHHHHHHHHHHHHHHHTTCCCTT
T ss_pred CCcccCHHHHHHHHHhCCeeEEEecCCCCCC-CCCchhhcCCCEEECCccCCCcHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 9999999999999999999999999999999 678999999999999999999999999999999999999999999999
Q ss_pred cccC
Q 006212 400 AINA 403 (656)
Q Consensus 400 ~Vn~ 403 (656)
.||+
T Consensus 320 ~v~~ 323 (334)
T 2dbq_A 320 LVNR 323 (334)
T ss_dssp BSCT
T ss_pred ccCH
Confidence 8883
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-58 Score=488.45 Aligned_cols=315 Identities=27% Similarity=0.442 Sum_probs=288.9
Q ss_pred CCCeEEEeCCCCHhHHHHhhcC--CcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccc
Q 006212 89 PKPTILVSEKLGEAGLAILRSF--GNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVG 163 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~--~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~G 163 (656)
+|++||+++.+.+...+.|++. .++.... ..+++++.+.++++|++++++.++++++++++++|+||+|++.|+|
T Consensus 7 ~~~~il~~~~~~~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~~~~~Lk~I~~~~~G 86 (330)
T 2gcg_A 7 RLMKVFVTRRIPAEGRVALARAADCEVEQWDSDEPIPAKELERGVAGAHGLLCLLSDHVDKRILDAAGANLKVISTMSVG 86 (330)
T ss_dssp CCEEEEESSCCCHHHHHHHHHCTTEEEEECCSSSCCCHHHHHHHHTTCSEEEECTTSCBCHHHHHHHCTTCCEEEESSSC
T ss_pred CCCEEEEECCCCHHHHHHHHhcCCceEEEecCCCCCCHHHHHHHhcCCeEEEECCCCCCCHHHHHhcCCCceEEEECCcc
Confidence 4678999999998889988876 4555432 2467899999999999999877789999999874599999999999
Q ss_pred cCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChh
Q 006212 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKV 240 (656)
Q Consensus 164 vD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~I 240 (656)
+||||+++|+++||.|+|+||+++.+||||++++||+++|+++++++.+++|+|.+. .+.|.++.|+||||||+|.|
T Consensus 87 ~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~g~~vgIIG~G~i 166 (330)
T 2gcg_A 87 IDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLTQSTVGIIGLGRI 166 (330)
T ss_dssp CTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCTTCEEEEECCSHH
T ss_pred cccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCCCCEEEEECcCHH
Confidence 999999999999999999999999999999999999999999999999999999742 23578999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
|+.+|++++++||+|++||++. ..+.+...|+..+++++++++||+|++|+|.+++|+++++++.++.||+|++|||++
T Consensus 167 G~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~l~e~l~~aDvVi~~vp~~~~t~~~i~~~~~~~mk~gailIn~s 246 (330)
T 2gcg_A 167 GQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFVSTPELAAQSDFIVVACSLTPATEGLCNKDFFQKMKETAVFINIS 246 (330)
T ss_dssp HHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEECCHHHHHHHCSEEEECCCCCTTTTTCBSHHHHHHSCTTCEEEECS
T ss_pred HHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeCCHHHHHhhCCEEEEeCCCChHHHHhhCHHHHhcCCCCcEEEECC
Confidence 9999999999999999999876 445555667777799999999999999999999999999999999999999999999
Q ss_pred CCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 320 RGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 320 Rg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
||+++|+++|.++|+++++.||++|||+.||++.++|||+++|+++|||+|+.|.|+++++...+++|+.+|++|+++.+
T Consensus 247 rg~~v~~~aL~~aL~~~~i~ga~lDv~~~epl~~~~~l~~~~nvi~tPh~~~~t~~~~~~~~~~~~~n~~~~~~g~~~~~ 326 (330)
T 2gcg_A 247 RGDVVNQDDLYQALASGKIAAAGLDVTSPEPLPTNHPLLTLKNCVILPHIGSATHRTRNTMSLLAANNLLAGLRGEPMPS 326 (330)
T ss_dssp CGGGBCHHHHHHHHHHTSSSEEEESCCSSSSCCTTCGGGGCTTEEECCSCTTCBHHHHHHHHHHHHHHHHHHHHTCCCTT
T ss_pred CCcccCHHHHHHHHHcCCccEEEeCCCCCCCCCCCChhhcCCCEEECCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999888
Q ss_pred cccC
Q 006212 400 AINA 403 (656)
Q Consensus 400 ~Vn~ 403 (656)
.||.
T Consensus 327 ~v~~ 330 (330)
T 2gcg_A 327 ELKL 330 (330)
T ss_dssp EECC
T ss_pred CCCC
Confidence 8873
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-58 Score=488.19 Aligned_cols=296 Identities=21% Similarity=0.258 Sum_probs=259.5
Q ss_pred CCeEEEeCCCC--HhHHHHhhcC-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLG--EAGLAILRSF-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~--~~~~~~l~~~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
.+||+++.+.. +...+.|++. .++++... +.+ ...++|+++++. ++++++++ |+||+|++.|+||||
T Consensus 3 ~mkil~~~~~~~~~~~~~~l~~~~p~~~~~~~-~~~----~~~~ad~~i~~~---~~~~~l~~--~~Lk~I~~~~aG~d~ 72 (315)
T 3pp8_A 3 AMEIIFYHPTFNAAWWVNALEKALPHARVREW-KVG----DNNPADYALVWQ---PPVEMLAG--RRLKAVFVLGAGVDA 72 (315)
T ss_dssp CEEEEEECSSSCHHHHHHHHHHHSTTEEEEEC-CTT----CCSCCSEEEESS---CCHHHHTT--CCCSEEEESSSCCHH
T ss_pred ceEEEEEcCCCchHHHHHHHHHHCCCCEEEec-CCC----CccCcEEEEECC---CCHHHhCC--CCceEEEECCEeccc
Confidence 36899887765 4455666554 46665432 111 356999999874 57999987 599999999999999
Q ss_pred c-c-hhh---HHhcCceeecCCCCC-hhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChh
Q 006212 167 V-D-LQA---ATEFGCLVVNAPIAN-TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKV 240 (656)
Q Consensus 167 i-D-~~a---a~~~GI~V~n~p~~n-~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~I 240 (656)
| | +++ |.++||.|+|+|+++ +.+||||++++||+++|+++++++.+++|+|.+. .+.+++||||||||+|.|
T Consensus 73 i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~--~~~~l~g~tvGIiG~G~I 150 (315)
T 3pp8_A 73 ILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL--PEYTREEFSVGIMGAGVL 150 (315)
T ss_dssp HHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC--CCCCSTTCCEEEECCSHH
T ss_pred ccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC--CCCCcCCCEEEEEeeCHH
Confidence 9 7 887 789999999999864 7999999999999999999999999999999864 578999999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCCChhHHHHcCCe----ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 006212 241 GSEVARRAKGLGMNVIAHDPYAPADKARAVGVE----LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~----~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI 316 (656)
|+.+|+++++|||+|++||++.... .++. ..++++++++||+|++|+|++++|+++++++.|+.||+|++||
T Consensus 151 G~~vA~~l~~~G~~V~~~dr~~~~~----~~~~~~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~~~l~~mk~gailI 226 (315)
T 3pp8_A 151 GAKVAESLQAWGFPLRCWSRSRKSW----PGVESYVGREELRAFLNQTRVLINLLPNTAQTVGIINSELLDQLPDGAYVL 226 (315)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCCCC----TTCEEEESHHHHHHHHHTCSEEEECCCCCGGGTTCBSHHHHTTSCTTEEEE
T ss_pred HHHHHHHHHHCCCEEEEEcCCchhh----hhhhhhcccCCHHHHHhhCCEEEEecCCchhhhhhccHHHHhhCCCCCEEE
Confidence 9999999999999999999875321 1222 1479999999999999999999999999999999999999999
Q ss_pred EcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006212 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 317 NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (656)
|+|||+++|+++|+++|++|+|+||+||||+.||++.++|||++||+++|||+|++|.+ +++...+++|+.+|++|++
T Consensus 227 N~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~EPl~~~~pL~~~~nvilTPHia~~t~~--~~~~~~~~~ni~~~~~G~~ 304 (315)
T 3pp8_A 227 NLARGVHVQEADLLAALDSGKLKGAMLDVFSQEPLPQESPLWRHPRVAMTPHIAAVTRP--AEAIDYISRTITQLEKGEP 304 (315)
T ss_dssp ECSCGGGBCHHHHHHHHHHTSEEEEEESCCSSSSCCTTCGGGGCTTEEECSSCSSCCCH--HHHHHHHHHHHHHHHHTCC
T ss_pred ECCCChhhhHHHHHHHHHhCCccEEEcCCCCCCCCCCCChhhcCCCEEECCCCCcccHH--HHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999986 5788999999999999999
Q ss_pred CCccccC
Q 006212 397 SATAINA 403 (656)
Q Consensus 397 ~~~~Vn~ 403 (656)
+.+.||.
T Consensus 305 ~~~~V~~ 311 (315)
T 3pp8_A 305 VTGQVDR 311 (315)
T ss_dssp CCCBCCC
T ss_pred CCceECc
Confidence 9999985
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-57 Score=476.09 Aligned_cols=293 Identities=22% Similarity=0.268 Sum_probs=265.7
Q ss_pred eEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhh
Q 006212 92 TILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQA 171 (656)
Q Consensus 92 ~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~a 171 (656)
|||+++++++..++.|++.. .++. .+.+.++|+++++. .+.++++++ |+||+|+++|+|+||||+++
T Consensus 2 ~il~~~~~~~~~~~~l~~~~-~~v~--------~~~~~~~d~~i~~~---~~~~~l~~~-~~Lk~I~~~~~G~d~id~~~ 68 (303)
T 1qp8_A 2 ELYVNFELPPEAEEELRKYF-KIVR--------GGDLGNVEAALVSR---ITAEELAKM-PRLKFIQVVTAGLDHLPWES 68 (303)
T ss_dssp EEECCSCCCHHHHHHHHTTC-EEEC--------SSCCTTBCCCCBSC---CCHHHHHHC-TTCCCEEBSSSCCTTSCCTT
T ss_pred EEEEccCCCHHHHHHHHhcC-Cccc--------hhhhCCCEEEEECC---CCHHHHhhC-CCCcEEEECCcCcccccHHH
Confidence 79999999999999887752 2221 25678999999765 457999988 59999999999999999998
Q ss_pred HHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcC
Q 006212 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGL 251 (656)
Q Consensus 172 a~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~ 251 (656)
+ ++||.|+|+||+++.+||||++++||+++|+++++++.+++|.|.+. ..+.++.||||||||+|+||+++|+++++|
T Consensus 69 ~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~-~~~~~l~g~~vgIIG~G~IG~~~A~~l~~~ 146 (303)
T 1qp8_A 69 I-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRD-VEIPLIQGEKVAVLGLGEIGTRVGKILAAL 146 (303)
T ss_dssp S-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC-SCCCCCTTCEEEEESCSTHHHHHHHHHHHT
T ss_pred H-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCC-CCCCCCCCCEEEEEccCHHHHHHHHHHHHC
Confidence 5 79999999999999999999999999999999999999999999753 234589999999999999999999999999
Q ss_pred CCEEEEECCCCChhHHHHcCC-eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006212 252 GMNVIAHDPYAPADKARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALV 330 (656)
Q Consensus 252 G~~Vi~~d~~~~~~~a~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~ 330 (656)
||+|++||++.. +. +. ...++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+++|.
T Consensus 147 G~~V~~~dr~~~-~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~~~l~~mk~gailin~srg~~vd~~aL~ 221 (303)
T 1qp8_A 147 GAQVRGFSRTPK-EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVL 221 (303)
T ss_dssp TCEEEEECSSCC-CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHH
T ss_pred CCEEEEECCCcc-cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCHHHHhhCCCCCEEEECCCCcccCHHHHH
Confidence 999999998865 21 33 3458999999999999999999999999999999999999999999999999999999
Q ss_pred HhHhcCCeEEEEeecc-CCCCCCCCCccccCCcEEEcCCCCCC--cHHHHHHHHHHHHHHHHHHHcCCCCCccccCC
Q 006212 331 RALDSGVVAQAALDVF-TEEPPAKDSKLVQHENVTVTPHLGAS--TKEAQEGVAIEIAEAVVGALRGELSATAINAP 404 (656)
Q Consensus 331 ~aL~~g~i~gA~lDV~-~~EP~~~~~~L~~~~nvilTPH~g~~--T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p 404 (656)
++|++|+|+||++||| +.||+++++|||+++|+|+|||+++. |.|+++++...+++|+.+|++|+++.+.||..
T Consensus 222 ~aL~~g~i~gA~lDv~~~~ep~~~~~~L~~~~nviltPH~~~~~~t~e~~~~~~~~~~~nl~~~~~g~~~~~~v~~~ 298 (303)
T 1qp8_A 222 RILKERPQFIFASDVWWGRNDFAKDAEFFSLPNVVATPWVAGGYGNERVWRQMVMEAVRNLITYATGGRPRNIAKRE 298 (303)
T ss_dssp HHHHHCTTCEEEESCCTTTTCCGGGHHHHTSTTEEECCSCSSSSSCHHHHHHHHHHHHHHHHHHHTTSCCSCBCCGG
T ss_pred HHHHhCCceEEEeccCCCCCCCCCCChhhcCCCEEECCCcCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCCceeCHH
Confidence 9999999999999999 88998889999999999999999998 99999999999999999999999999988843
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-55 Score=474.92 Aligned_cols=279 Identities=28% Similarity=0.422 Sum_probs=249.6
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEEecC--CCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFGNVECLYD--LSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~--~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
.|+|||+.+.++ ...+.+++.+++.+... ++.+ .+.++|++++++.+++++++++ + ++||+|+++|+|+||
T Consensus 2 ~mmkIl~~~~~p-~~~~~~~~~~~v~~~~~~~~~~~----~l~~ad~li~~~~~~v~~~ll~-~-~~Lk~I~~~~~G~D~ 74 (381)
T 3oet_A 2 NAMKILVDENMP-YARELFSRLGEVKAVPGRPIPVE----ELNHADALMVRSVTKVNESLLS-G-TPINFVGTATAGTDH 74 (381)
T ss_dssp CCCEEEEETTST-THHHHHTTSSEEEEECC---CHH----HHTTCSEEEECTTSCBSHHHHT-T-SCCCEEEESSSCCTT
T ss_pred CceEEEECCCCc-HHHHHHhhCCcEEEeCCCCCCHH----HHCCCEEEEECCCCCCCHHHHc-C-CCCEEEEEccccccc
Confidence 357999998875 45788888888776432 2333 4789999999988899999998 4 369999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVAR 246 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~ 246 (656)
||+++|+++||.|+|+||+|+.+||||++++||+++|+. |.+|+||||||||+|+||+++|+
T Consensus 75 iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~------------------g~~l~gktvGIIGlG~IG~~vA~ 136 (381)
T 3oet_A 75 VDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERD------------------GFSLRDRTIGIVGVGNVGSRLQT 136 (381)
T ss_dssp BCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHT------------------TCCGGGCEEEEECCSHHHHHHHH
T ss_pred cCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhc------------------CCccCCCEEEEEeECHHHHHHHH
Confidence 999999999999999999999999999999999999852 56899999999999999999999
Q ss_pred HHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcc----ccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 247 RAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 247 ~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~----T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
++++|||+|++|||+.. ....+....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||+|||+
T Consensus 137 ~l~a~G~~V~~~d~~~~---~~~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~aRG~ 213 (381)
T 3oet_A 137 RLEALGIRTLLCDPPRA---ARGDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADETLIRRLKPGAILINACRGP 213 (381)
T ss_dssp HHHHTTCEEEEECHHHH---HTTCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCHHHHHHSCTTEEEEECSCGG
T ss_pred HHHHCCCEEEEECCChH---HhccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCHHHHhcCCCCcEEEECCCCc
Confidence 99999999999998531 112455677999999999999999999999 99999999999999999999999999
Q ss_pred hhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 323 VIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 323 ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
++|+++|+++|++|+++||+||||+.||++ +++||.++ +++|||+|++|.|++.++...+++|+.+|+++...
T Consensus 214 vvde~aL~~aL~~g~i~gA~LDV~e~EP~~-~~~L~~~~-~i~TPHiag~t~e~~~~~~~~~~~~l~~~l~~~~~ 286 (381)
T 3oet_A 214 VVDNAALLARLNAGQPLSVVLDVWEGEPDL-NVALLEAV-DIGTSHIAGYTLEGKARGTTQVFEAYSAFIGREQR 286 (381)
T ss_dssp GBCHHHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHHHS-SEECSSCTTCCHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCHHHHHHHHHhCCCeEEEeeccccCCCC-cchhhhCC-EEECCccCcCcHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999986 56799775 78999999999999999999999999999987654
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.3e-55 Score=455.19 Aligned_cols=278 Identities=26% Similarity=0.360 Sum_probs=240.7
Q ss_pred eEEEeCCCC----HhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 92 TILVSEKLG----EAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 92 ~ilv~~~l~----~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
+|++..++. +.+.+.|+.+. +.+ .+.+.++|++|+ +.+++ ++ |+||+|+++|+|+|||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~l~~~~-~~~---------~~~~~~ad~li~-~~~~~------~~-~~Lk~I~~~~~G~d~i 63 (290)
T 3gvx_A 2 DVYVNFPADGHVREIAKTVLDGFD-LHW---------YPDYYDAEAQVI-KDRYV------LG-KRTKMIQAISAGVDHI 63 (290)
T ss_dssp CEEECSCCCHHHHHHHHHHTTTSC-EEE---------TTSCCCCSEEEE-SSCCC------CC-SSCCEEEECSSCCTTS
T ss_pred ceEEecCCcchHHHHHHHHhcccc-ccc---------Ccchhhhhhhhh-hhhhh------hh-hhhHHHHHHhcCCcee
Confidence 455556654 44455555442 222 166899999998 33443 45 6999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHH
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARR 247 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~ 247 (656)
|+++|+++||.+.| +|.|+.+||||++++||+++|+++.+++.+++|+|.+.. ..+|+||||||||+|.||+++|++
T Consensus 64 d~~~~~~~~~~~~~-~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~--~~~l~g~tvGIIGlG~IG~~vA~~ 140 (290)
T 3gvx_A 64 DVNGIPENVVLCSN-AGAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSP--TTLLYGKALGILGYGGIGRRVAHL 140 (290)
T ss_dssp CGGGSCTTSEEECC-HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--CCCCTTCEEEEECCSHHHHHHHHH
T ss_pred ecCCCccceEEeec-CCcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCC--ceeeecchheeeccCchhHHHHHH
Confidence 99999997766555 689999999999999999999999999999999998753 378999999999999999999999
Q ss_pred HhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 248 AKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 248 lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
+++|||+|++||++..... .+..+ ++++++++||+|++|+|++++|+++++++.|+.||+|++|||+|||+++|+
T Consensus 141 l~~~G~~V~~~dr~~~~~~----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~~~l~~mk~gailIN~aRG~~vd~ 216 (290)
T 3gvx_A 141 AKAFGMRVIAYTRSSVDQN----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNSRLLANARKNLTIVNVARADVVSK 216 (290)
T ss_dssp HHHHTCEEEEECSSCCCTT----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTCCTTCEEEECSCGGGBCH
T ss_pred HHhhCcEEEEEeccccccc----cccccCChHHHhhccCeEEEEeeccccchhhhhHHHHhhhhcCceEEEeehhcccCC
Confidence 9999999999999863221 14445 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCC-CCcHHHHHHHHHHHHHHHHHHHcCCCC
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLG-ASTKEAQEGVAIEIAEAVVGALRGELS 397 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g-~~T~ea~~~~~~~~~~~i~~~l~g~~~ 397 (656)
++|+++|++|++.||++|||+.||+ +|||++||+++|||+| ++|.|+++++...+++|+.+|++|+.-
T Consensus 217 ~aL~~aL~~g~i~ga~lDV~~~EP~---~pL~~~~nvilTPHiag~~t~e~~~~~~~~~~~ni~~~~~~~~~ 285 (290)
T 3gvx_A 217 PDMIGFLKERSDVWYLSDVWWNEPE---ITETNLRNAILSPHVAGGMSGEIMDIAIQLAFENVRNFFEGEGH 285 (290)
T ss_dssp HHHHHHHHHCTTCEEEESCCTTTTS---CCSCCCSSEEECCSCSSCBTTBCCHHHHHHHHHHHHHHTC----
T ss_pred cchhhhhhhccceEEeeccccCCcc---cchhhhhhhhcCccccCCccchHHHHHHHHHHHHHHhhhcCCCc
Confidence 9999999999999999999999986 8999999999999999 999999999999999999999999864
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=453.82 Aligned_cols=281 Identities=31% Similarity=0.444 Sum_probs=248.4
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
+||++.+.++. ..+.+++.+++.+... .+...+.+.++|++++++.+++++++++ + |+||+|+++|+|+||||++
T Consensus 1 mkil~~~~~~~-~~~~~~~~~~v~~~~~--~~~~~~~l~~ad~li~~~~~~~~~~~l~-~-~~Lk~I~~~~~G~D~iD~~ 75 (380)
T 2o4c_A 1 MRILADENIPV-VDAFFADQGSIRRLPG--RAIDRAALAEVDVLLVRSVTEVSRAALA-G-SPVRFVGTCTIGTDHLDLD 75 (380)
T ss_dssp CEEEEETTCTT-HHHHHGGGSEEEEECG--GGCSTTTTTTCSEEEECTTSCBCHHHHT-T-SCCCEEEECSSCSTTBCHH
T ss_pred CEEEEecCchH-HHHHHHhCCcEEEecC--CcCChHHHCCcEEEEEcCCCCCCHHHhc-C-CCceEEEEcCcccchhhHH
Confidence 37888887754 4677777667665331 1112234689999999988899999998 6 6999999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
+|+++||.|+|+||+|+.+||||++++||+++|+ | |.++.|+||||||+|+||+++|+++++
T Consensus 76 ~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~------------~------~~~l~g~tvGIIGlG~IG~~vA~~l~~ 137 (380)
T 2o4c_A 76 YFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV------------R------GADLAERTYGVVGAGQVGGRLVEVLRG 137 (380)
T ss_dssp HHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHH------------H------TCCGGGCEEEEECCSHHHHHHHHHHHH
T ss_pred HHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhh------------h------hcccCCCEEEEEeCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999986 2 468999999999999999999999999
Q ss_pred CCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcc----ccccccHHHHhcCCCCcEEEEcCCCchhcH
Q 006212 251 LGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPT----TSKIFNDETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 251 ~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~----T~~li~~~~l~~mK~gailINvaRg~ivde 326 (656)
|||+|++|||+... ...|....++++++++||+|++|+|++++ |+++++++.|+.||+|++|||++||+++|+
T Consensus 138 ~G~~V~~~d~~~~~---~~~g~~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~~~l~~mk~gailIN~sRG~vvd~ 214 (380)
T 2o4c_A 138 LGWKVLVCDPPRQA---REPDGEFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDEPRLAALRPGTWLVNASRGAVVDN 214 (380)
T ss_dssp TTCEEEEECHHHHH---HSTTSCCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCHHHHHTSCTTEEEEECSCGGGBCH
T ss_pred CCCEEEEEcCChhh---hccCcccCCHHHHHHhCCEEEEeccCccccccchhhhcCHHHHhhCCCCcEEEECCCCcccCH
Confidence 99999999986421 13455667999999999999999999999 999999999999999999999999999999
Q ss_pred HHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCc
Q 006212 327 EALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSAT 399 (656)
Q Consensus 327 ~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~ 399 (656)
++|+++|++|+|.||+||||+.||++ +++|+. +|+++|||+|++|.|++.++...+++|+.+|++|+...+
T Consensus 215 ~aL~~aL~~g~i~~A~LDV~~~EP~~-~~~l~~-~nvi~TPHiag~t~e~~~~~~~~~~~nl~~~l~g~~~~~ 285 (380)
T 2o4c_A 215 QALRRLLEGGADLEVALDVWEGEPQA-DPELAA-RCLIATPHIAGYSLEGKLRGTAQIYQAYCAWRGIAERVS 285 (380)
T ss_dssp HHHHHHHHTTCCEEEEESCCTTTTSC-CHHHHT-TCSEECSSCTTCCHHHHHHHHHHHHHHHHHHHTCCCCCC
T ss_pred HHHHHHHHhCCCceEEeeeeccCCCC-chhhcc-CCEEEccccCcCCHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 99999999999999999999999964 678886 599999999999999999999999999999999986444
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=344.43 Aligned_cols=272 Identities=18% Similarity=0.183 Sum_probs=233.7
Q ss_pred CcceeEE-ecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 152 GKLKVVG-RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 152 ~~LK~I~-~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
++++.|+ .+++|+|++ ++|+++||.|+|+|++|. ++|| +++|++....+.++.| |.+ +.+.++.||
T Consensus 192 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r--~~~~~l~Gk 258 (479)
T 1v8b_A 192 KKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMR--ATDFLISGK 258 (479)
T ss_dssp TTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHH--HHCCCCTTS
T ss_pred cCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 9999 4578999899999998 975 457899999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
||||||+|.||+.+|+++++|||+|++||++... ..+...|+...++++++++||+|++|+ .|+++++.+.|+.|
T Consensus 259 tVgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 334 (479)
T 1v8b_A 259 IVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCT----GNVDVIKLEHLLKM 334 (479)
T ss_dssp EEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECC----SSSSSBCHHHHTTC
T ss_pred EEEEEeeCHHHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEecCHHHHHhcCCEEEECC----ChhhhcCHHHHhhc
Confidence 9999999999999999999999999999998643 345667888889999999999999995 68999999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHHHH--hHhcCCeEEEEeeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHH
Q 006212 310 KKGVRIVNVARGGV-IDEEALVR--ALDSGVVAQAALDVFTEEPPAKDSKLVQH--ENVTVTPHLG-ASTKE-AQEGVAI 382 (656)
Q Consensus 310 K~gailINvaRg~i-vde~aL~~--aL~~g~i~gA~lDV~~~EP~~~~~~L~~~--~nvilTPH~g-~~T~e-a~~~~~~ 382 (656)
|+|++|||+|||++ ||+++|.+ +|++|+|. +++|||+. +.++||+.+ +|+++| |+| +.+.+ ++..++.
T Consensus 335 K~gailiNvgrg~~EId~~aL~~~~AL~~g~I~-a~lDv~pl---p~~~~l~~l~~~nvv~t-H~atghp~e~~~~s~a~ 409 (479)
T 1v8b_A 335 KNNAVVGNIGHFDDEIQVNELFNYKGIHIENVK-PQVDRITL---PNGNKIIVLARGRLLNL-GCATGHPAFVMSFSFCN 409 (479)
T ss_dssp CTTCEEEECSSTTTSBCHHHHHTSTTCEEEEEE-TTEEEEEC---TTSCEEEEEGGGSBHHH-HSSCCSCHHHHHHHHHH
T ss_pred CCCcEEEEeCCCCccccchhhhccccceeeeEe-eeEEEEEC---CCCCeeeEecCCCEEEE-eccCCCCchhHHHHHHH
Confidence 99999999999999 99999999 99999998 99999843 457899988 999999 999 66766 7888999
Q ss_pred HHHHHHHHHHcCC--CCCccccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCC
Q 006212 383 EIAEAVVGALRGE--LSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451 (656)
Q Consensus 383 ~~~~~i~~~l~g~--~~~~~Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~ 451 (656)
++++|+..|++|+ .+.+.|+ .+|....+.+.+ +.| +++|....||..+ ..+.+.+.+.|.+.+
T Consensus 410 ~~~~ni~~~~~g~~~~l~n~V~--~lp~~~de~va~-l~L-~~lG~~l~~lt~~--q~~yi~v~~~g~~~~ 474 (479)
T 1v8b_A 410 QTFAQLDLWQNKDTNKYENKVY--LLPKHLDEKVAL-YHL-KKLNASLTELDDN--QCQFLGVNKSGPFKS 474 (479)
T ss_dssp HHHHHHHHHHTTTSSSCCSSEE--CCCHHHHHHHHH-HHH-GGGTCCCCCCCHH--HHHHHTCCTTSCCSC
T ss_pred HHHHHHHHHHcCCCCcCCcceE--eCChhhHHHHHH-HHH-HHcCChHhhcChh--hhhhEeeeeCCCCCc
Confidence 9999999999999 8888776 345555555665 355 6777777777666 566677777787763
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-38 Score=347.10 Aligned_cols=271 Identities=17% Similarity=0.205 Sum_probs=229.4
Q ss_pred CcceeEE-ecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 152 GKLKVVG-RAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 152 ~~LK~I~-~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++|.|+ .+++|+|++ ++|+++||.|+|+|++|. +|||+ ++|++....+.++.| |.+ ..|.++.||
T Consensus 212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~-------l~r~~~~~~~~l~~g-w~~--~~g~~L~Gk 278 (494)
T 3d64_A 212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKS-------KFDNLYGCRESLVDG-IKR--ATDVMIAGK 278 (494)
T ss_dssp TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------HHHHHHHHHTTHHHH-HHH--HHCCCCTTC
T ss_pred hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHH-------HHhhhHhhhhhhhhh-hhh--ccccccCCC
Confidence 4899998 889999998 899999999999999999 99994 457887777777777 865 467899999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh-HHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD-KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~-~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
||||||+|.||+.+|+++++|||+|++||++.... .+...|+...++++++++||+|++|+ +|+++|+++.|+.|
T Consensus 279 tVgIIG~G~IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~~~l~ell~~aDiVi~~~----~t~~lI~~~~l~~M 354 (494)
T 3d64_A 279 IAVVAGYGDVGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRVVTMEYAADKADIFVTAT----GNYHVINHDHMKAM 354 (494)
T ss_dssp EEEEECCSHHHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECS----SSSCSBCHHHHHHC
T ss_pred EEEEEccCHHHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEeCCHHHHHhcCCEEEECC----CcccccCHHHHhhC
Confidence 99999999999999999999999999999986332 44556888889999999999999997 58999999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccC--CcEEEcCCCC-CCcHH-HHHHHHHHH
Q 006212 310 KKGVRIVNVARGGV-IDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQH--ENVTVTPHLG-ASTKE-AQEGVAIEI 384 (656)
Q Consensus 310 K~gailINvaRg~i-vde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~--~nvilTPH~g-~~T~e-a~~~~~~~~ 384 (656)
|+|++|||+|||++ ||+++| ++|++|+|+ +++|+ +|++.++|||.+ +|+++| |+| +.+.+ ++..++..+
T Consensus 355 K~gAilINvgrg~veID~~aL-~AL~~g~I~-~~~Dv---~plp~~~pL~~l~~~nvv~t-H~atg~~~~~~~~~~a~~~ 428 (494)
T 3d64_A 355 RHNAIVCNIGHFDSEIDVAST-RQYQWENIK-PQVDH---IIFPDGKRVILLAEGRLVNL-GCATGHPSFVMSNSFTNQT 428 (494)
T ss_dssp CTTEEEEECSSSSCSBCCGGG-TTSEEEEEE-TTEEE---EECTTSCEEEEEGGGSBHHH-HTSCCSCHHHHHHHHHHHH
T ss_pred CCCcEEEEcCCCcchhchHHH-HhhhcCccc-eeEEE---EECCCCCchhhcCCCCEEEE-eCcCCCCHHHHHHHHHHHH
Confidence 99999999999999 699999 999999997 55555 566678999988 999999 999 66754 788899999
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCC
Q 006212 385 AEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDP 451 (656)
Q Consensus 385 ~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~ 451 (656)
++|+..|++|+.+.+.|+. +|.+.-..+.+ +.| +++|....||..+ ..+-+.+.+.|.+.+
T Consensus 429 ~~ni~~~~~g~~~~n~V~~--lp~~~d~~va~-l~L-~~~g~~~~~l~~~--q~~y~~v~~~g~~~~ 489 (494)
T 3d64_A 429 LAQIELFTRGGEYANKVYV--LPKHLDEKVAR-LHL-ARIGAQLSELSDD--QAAYIGVSKAGPFKP 489 (494)
T ss_dssp HHHHHHHHHGGGSCSSEEE--CCHHHHHHHHH-HHH-TTTTCCCCCCCHH--HHHHHTCCTTSCCSC
T ss_pred HHHHHHHHcCCCCCCceee--CChhHHHHHHH-HHH-HHcCChHHhhChh--hHHhEeeccCCCCCc
Confidence 9999999999999888862 45555545555 556 7777777777766 566677777787763
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.3e-28 Score=251.94 Aligned_cols=206 Identities=20% Similarity=0.226 Sum_probs=167.4
Q ss_pred CCCCeEEEeCC--CCHhHHHHhhcCC-cEEEecC----------CCHhHHHhhcCCCeEEEEc----------------C
Q 006212 88 TPKPTILVSEK--LGEAGLAILRSFG-NVECLYD----------LSPEALCEKISQCDALIVR----------------S 138 (656)
Q Consensus 88 ~~~~~ilv~~~--l~~~~~~~l~~~~-~v~~~~~----------~~~eel~~~i~~~d~liv~----------------~ 138 (656)
+..++|++... ......+.|.+.+ +|.+... ...+++.+.++++|+++++ .
T Consensus 3 ~~~m~i~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~~~~~~~ 82 (293)
T 3d4o_A 3 LTGKHVVIIGGDARQLEIIRKLSTFDAKISLVGFDQLDDGFIGVTKMRIDEVDWNTVDAILLPISGTNEAGKVDTIFSNE 82 (293)
T ss_dssp CTTCEEEEECBCHHHHHHHHHHHHTTCEEEEESCTTCC--CTTCEEECGGGCCGGGCSEEECCTTCCCTTCBCCBSSCSC
T ss_pred ccCcEEEEECCCHHHHHHHHHHHhCCCEEEEeccccccccccccccccchHHHHhcCCEEEeccccccCCceeecccccC
Confidence 44567888763 3345566676653 6654321 1235677788999999985 2
Q ss_pred CCCCCHHHHHhcCCcceeEEecccccCccch-hhHHhcCceeecCC------CCChhhHHHHHHHHHHHHHhchhHHHHH
Q 006212 139 GTKVTRSVFEAANGKLKVVGRAGVGIDNVDL-QAATEFGCLVVNAP------IANTVAAAEHGIALLASMARNVSQADAS 211 (656)
Q Consensus 139 ~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~-~aa~~~GI~V~n~p------~~n~~~vAE~~lal~L~~~R~i~~~~~~ 211 (656)
.+++++++++++ |+||+|+ +|+||+|+ ++|+++||.|+|+| ++|+.++||++++++|..
T Consensus 83 ~~~~~~~~l~~~-~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~---------- 148 (293)
T 3d4o_A 83 SIVLTEEMIEKT-PNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQH---------- 148 (293)
T ss_dssp CCBCCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHH----------
T ss_pred CccchHHHHHhC-CCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHh----------
Confidence 346899999988 5899997 89999998 99999999999998 899999999999988852
Q ss_pred HHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCee---cCHHHHhccCCEE
Q 006212 212 IKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL---VSFDQALATADFI 287 (656)
Q Consensus 212 ~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~---~~l~ell~~aDvV 287 (656)
.+.++.|+|+||||+|.||+.+|++++++||+|++||++.. .+.+.+.|+.. .++++++++||+|
T Consensus 149 -----------~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvV 217 (293)
T 3d4o_A 149 -----------TDFTIHGANVAVLGLGRVGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVC 217 (293)
T ss_dssp -----------CSSCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEE
T ss_pred -----------cCCCCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEE
Confidence 25689999999999999999999999999999999999863 23445667764 3788999999999
Q ss_pred EEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 288 SLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
++|+|. ++++++.++.||+++++||++||+.
T Consensus 218 i~~~p~-----~~i~~~~l~~mk~~~~lin~ar~~~ 248 (293)
T 3d4o_A 218 INTIPA-----LVVTANVLAEMPSHTFVIDLASKPG 248 (293)
T ss_dssp EECCSS-----CCBCHHHHHHSCTTCEEEECSSTTC
T ss_pred EECCCh-----HHhCHHHHHhcCCCCEEEEecCCCC
Confidence 999995 6889999999999999999999754
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-27 Score=266.14 Aligned_cols=271 Identities=18% Similarity=0.168 Sum_probs=212.2
Q ss_pred cceeE-EecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCE
Q 006212 153 KLKVV-GRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKT 231 (656)
Q Consensus 153 ~LK~I-~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gkt 231 (656)
+++-+ ...|+|||++ .++.++||.++|++++|. ++||+ ++|++....+.+..+ |.+ ..+..+.|++
T Consensus 210 ~i~GvveetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~-------~~r~l~~~~~s~~~g-~~r--~~~~~l~Gkt 276 (494)
T 3ce6_A 210 SVKGVTEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKS-------KFDNKYGTRHSLIDG-INR--GTDALIGGKK 276 (494)
T ss_dssp HCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHH-------TTHHHHHHHHHHHHH-HHH--HHCCCCTTCE
T ss_pred CeEEEEEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHH-------HHhhhhhhhhhhhHH-HHh--ccCCCCCcCE
Confidence 44545 4789999998 788999999999999999 99994 346665555555555 654 2355789999
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMK 310 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK 310 (656)
|+|+|+|.||+.+|++++++|++|+++|++.. .+.+.+.|+...+++++++++|+|+.|++ +.++++.+.++.||
T Consensus 277 V~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~~~l~e~l~~aDvVi~atg----t~~~i~~~~l~~mk 352 (494)
T 3ce6_A 277 VLICGYGDVGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDVVTVEEAIGDADIVVTATG----NKDIIMLEHIKAMK 352 (494)
T ss_dssp EEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHGGGCSEEEECSS----SSCSBCHHHHHHSC
T ss_pred EEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEEecHHHHHhCCCEEEECCC----CHHHHHHHHHHhcC
Confidence 99999999999999999999999999999863 35677889988899999999999999986 55688888999999
Q ss_pred CCcEEEEcCCCch-hcHHHHHH-hHhcCCeEEEEeeccCCCCCCCCCccccCCcEE----EcCCCCCCcHHHHHHHHHHH
Q 006212 311 KGVRIVNVARGGV-IDEEALVR-ALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT----VTPHLGASTKEAQEGVAIEI 384 (656)
Q Consensus 311 ~gailINvaRg~i-vde~aL~~-aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvi----lTPH~g~~T~ea~~~~~~~~ 384 (656)
+|++|+|+||+++ +|+++|.+ +|+++.|. +++|+++.+|....-.|+..++++ +|||+++.+.+++ ..++
T Consensus 353 ~ggilvnvG~~~~eId~~aL~~~aL~~~~I~-~~ldv~~~~~~~~~l~LL~~grlvnL~~~TPH~a~~~~~s~---~~qa 428 (494)
T 3ce6_A 353 DHAILGNIGHFDNEIDMAGLERSGATRVNVK-PQVDLWTFGDTGRSIIVLSEGRLLNLGNATGHPSFVMSNSF---ANQT 428 (494)
T ss_dssp TTCEEEECSSSGGGBCHHHHHHTTCEEEEEE-TTEEEEECTTTCCEEEEEGGGSCHHHHHSCCSCHHHHHHHH---HHHH
T ss_pred CCcEEEEeCCCCCccCHHHHHHhhhccceEE-EEEEEeecCCcchHHHHHhCCCEEeccCCCCCccccchHHH---HHHH
Confidence 9999999999998 89999988 78888886 668988764321112367778888 9999998887653 6788
Q ss_pred HHHHHHHHcCCCCCccccCCCCChhhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCC
Q 006212 385 AEAVVGALRGELSATAINAPMVPSEVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARD 450 (656)
Q Consensus 385 ~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a 450 (656)
.+++..+++|+...+.| .+.++.+++....+.| ..+|....+|..+ ..+-+.+.+.|.+.
T Consensus 429 ~~ai~~~~~g~~~~~~V---~~~P~~~De~vA~lhL-~~lg~~l~~lt~~--q~~y~~v~~~G~~k 488 (494)
T 3ce6_A 429 IAQIELWTKNDEYDNEV---YRLPKHLDEKVARIHV-EALGGHLTKLTKE--QAEYLGVDVEGPYK 488 (494)
T ss_dssp HHHHHHHHTGGGCCSSE---ECCCHHHHHHHHHHHH-HHHTCCCCCCCHH--HHHHHTCCTTSCCS
T ss_pred HHHHHHHHcCCCCCCEE---EECHHHHHHHHHHhhH-HHHHHHHHHhChh--HHHHcccccCCCCC
Confidence 99999999988776666 3345667666656655 5666666666655 44555566667665
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-25 Score=235.61 Aligned_cols=210 Identities=16% Similarity=0.186 Sum_probs=162.4
Q ss_pred CCCCeEEEeCC--CCHhHHHHhhcCC-cEEEecCCCH-----------hHHHhhcCCCeEEEE----cC----------C
Q 006212 88 TPKPTILVSEK--LGEAGLAILRSFG-NVECLYDLSP-----------EALCEKISQCDALIV----RS----------G 139 (656)
Q Consensus 88 ~~~~~ilv~~~--l~~~~~~~l~~~~-~v~~~~~~~~-----------eel~~~i~~~d~liv----~~----------~ 139 (656)
+..+||++... ......+.|.+.+ +|.+. ..+. +++.+.+.++|++++ .. .
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~-~~~~~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a~ 83 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLV-GFDQLDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFSN 83 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEE-SCTTSSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSCS
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-eccccccccccceeccchHHHHhcCCEEEeccccccCCccccccccc
Confidence 44567888865 2334556676654 55543 2222 235677889999997 21 3
Q ss_pred CC--CCHHHHHhcCCcceeEEecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccc
Q 006212 140 TK--VTRSVFEAANGKLKVVGRAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGK 216 (656)
Q Consensus 140 ~~--v~~e~l~~~~~~LK~I~~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~ 216 (656)
++ +++++++++ |++|+|+ +|+||+| +++|+++||.|+|+|++++ + +++|+++.+ +|.
T Consensus 84 ~~~~~~~~~l~~~-~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~~--v---------~~~r~~~~~-----~g~ 143 (300)
T 2rir_A 84 EEVVLKQDHLDRT-PAHCVIF---SGISNAYLENIAAQAKRKLVKLFERDD--I---------AIYNSIPTV-----EGT 143 (300)
T ss_dssp SCEECCHHHHHTS-CTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSHH--H---------HHHHHHHHH-----HHH
T ss_pred CCccchHHHHhhc-CCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCCc--e---------EEEcCccHH-----HHH
Confidence 56 899999988 5899998 8999999 9999999999999999752 2 345666554 466
Q ss_pred cccc-cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCee---cCHHHHhccCCEEEEcc
Q 006212 217 WLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVEL---VSFDQALATADFISLHM 291 (656)
Q Consensus 217 W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~---~~l~ell~~aDvV~l~~ 291 (656)
|... ...+.++.|+|+||||+|.||+.+|++++++|++|++||++... +.+.+.|+.. .++++++++||+|++|+
T Consensus 144 ~~~~~~~~~~~l~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~ 223 (300)
T 2rir_A 144 IMLAIQHTDYTIHGSQVAVLGLGRTGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTI 223 (300)
T ss_dssp HHHHHHTCSSCSTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECC
T ss_pred HHHHHHhcCCCCCCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECC
Confidence 7532 23578999999999999999999999999999999999998532 3334567653 47999999999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
|. ++++++.++.||+++++||++||+.
T Consensus 224 p~-----~~i~~~~~~~mk~g~~lin~a~g~~ 250 (300)
T 2rir_A 224 PS-----MILNQTVLSSMTPKTLILDLASRPG 250 (300)
T ss_dssp SS-----CCBCHHHHTTSCTTCEEEECSSTTC
T ss_pred Ch-----hhhCHHHHHhCCCCCEEEEEeCCCC
Confidence 95 6789999999999999999999754
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.9e-22 Score=218.31 Aligned_cols=245 Identities=18% Similarity=0.215 Sum_probs=182.6
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHH-----------hhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006212 99 LGEAGLAILRSFG-NVECL------YDLSPEALC-----------EKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (656)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~eel~-----------~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~ 160 (656)
+.|+..+.|.+.+ +|.+. ..++.+++. +.+.++|+| +....++++|+.... ++..+++..
T Consensus 18 ltP~~v~~L~~~G~~V~ve~~ag~~~~f~d~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~~e~~~l~-~~~~l~~~~ 95 (377)
T 2vhw_A 18 ITPAGVAELTRRGHEVLIQAGAGEGSAITDADFKAAGAQLVGTADQVWADADLL-LKVKEPIAAEYGRLR-HGQILFTFL 95 (377)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCGGGGGGCC-TTCEEEECC
T ss_pred cCHHHHHHHHhCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCHHHHhccCCEE-EEeCCCChHHHhhcC-CCCEEEEEe
Confidence 5677777776554 55542 345666654 234568976 455556666666544 578888888
Q ss_pred ccccCccchhhHHhcCceee----------cCCCCChhhHHHHHHHHHHHHH-hchhHHHHHHHccccccccccccccCC
Q 006212 161 GVGIDNVDLQAATEFGCLVV----------NAPIANTVAAAEHGIALLASMA-RNVSQADASIKAGKWLRSKYVGVSLVG 229 (656)
Q Consensus 161 g~GvD~iD~~aa~~~GI~V~----------n~p~~n~~~vAE~~lal~L~~~-R~i~~~~~~~~~g~W~~~~~~g~~l~g 229 (656)
..++|..+++++.++||.++ |.|.+++ .||++..+++.+. |++. ..+.|+|..... ..++.|
T Consensus 96 ~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~s~--~ae~ag~~a~~~a~r~l~----~~~~g~~~~~~~-~~~l~g 168 (377)
T 2vhw_A 96 HLAASRACTDALLDSGTTSIAYETVQTADGALPLLAP--MSEVAGRLAAQVGAYHLM----RTQGGRGVLMGG-VPGVEP 168 (377)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHH--HHHHHHHHHHHHHHHHTS----GGGTSCCCCTTC-BTTBCC
T ss_pred cccCCHHHHHHHHHcCCeEEEeeeccccCCCccccCc--hHHHHHHHHHHHHHHHHH----HhcCCCcccccC-CCCCCC
Confidence 88999999999999999997 6777665 4599985554444 7763 344455432111 137899
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-cCCe-------ecCHHHHhccCCEEEEcc--CCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-VGVE-------LVSFDQALATADFISLHM--PLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-~g~~-------~~~l~ell~~aDvV~l~~--Plt~~T~ 298 (656)
++|+|+|+|.||+.+|+.++++|++|+++|++.. .+.+.+ .|.. ..+++++++++|+|+.|+ |.+ ++.
T Consensus 169 ~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~-~t~ 247 (377)
T 2vhw_A 169 ADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGA-KAP 247 (377)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTS-CCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCC-CCc
Confidence 9999999999999999999999999999998763 233333 4543 235788899999999977 544 788
Q ss_pred ccccHHHHhcCCCCcEEEEcC--CCchhcHHHHHHhHhcCCeEEEEeeccCC-CCCCCCCccccCCcEE--EcCCCCCCc
Q 006212 299 KIFNDETFAKMKKGVRIVNVA--RGGVIDEEALVRALDSGVVAQAALDVFTE-EPPAKDSKLVQHENVT--VTPHLGAST 373 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva--Rg~ivde~aL~~aL~~g~i~gA~lDV~~~-EP~~~~~~L~~~~nvi--lTPH~g~~T 373 (656)
++++++.++.||+|++|||++ +|+ ||+. ||.+.+.|++..+|++ +|||+++.+
T Consensus 248 ~li~~~~l~~mk~g~~iV~va~~~Gg----------------------v~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~ 305 (377)
T 2vhw_A 248 KLVSNSLVAHMKPGAVLVDIAIDQGG----------------------CFEGSRPTTYDHPTFAVHDTLFYCVANMPASV 305 (377)
T ss_dssp CCBCHHHHTTSCTTCEEEEGGGGTTC----------------------SBTTCCCBCSSSCEEEETTEEEECBTTGGGGS
T ss_pred ceecHHHHhcCCCCcEEEEEecCCCC----------------------ccccccCCCCCCCEEEECCEEEEecCCcchhh
Confidence 999999999999999999998 332 6777 8877788999999998 999999998
Q ss_pred HH
Q 006212 374 KE 375 (656)
Q Consensus 374 ~e 375 (656)
..
T Consensus 306 ~~ 307 (377)
T 2vhw_A 306 PK 307 (377)
T ss_dssp HH
T ss_pred HH
Confidence 76
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-18 Score=186.12 Aligned_cols=277 Identities=17% Similarity=0.190 Sum_probs=177.7
Q ss_pred CCCHhHHHHhhcCC-cEEEe------cCCCHhHHHh----------hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEec
Q 006212 98 KLGEAGLAILRSFG-NVECL------YDLSPEALCE----------KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRA 160 (656)
Q Consensus 98 ~l~~~~~~~l~~~~-~v~~~------~~~~~eel~~----------~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~ 160 (656)
.+.|+..+.|.+.+ +|.+. ..+++++..+ .+ ++|+|+ ....++.++ ++.+++++++|+..
T Consensus 17 ~l~P~~v~~L~~~g~~v~ve~~ag~~~~~~d~~y~~aga~i~~~~~~~-~ad~il-~vk~p~~~~-~~~l~~~~~~~~~~ 93 (369)
T 2eez_A 17 ALTPGGVESLVRRGHTVLVERGAGEGSGLSDAEYARAGAELVGREEAW-GAEMVV-KVKEPLPEE-YGFLREGLILFTYL 93 (369)
T ss_dssp SSCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECHHHHT-TSSEEE-CSSCCCGGG-GGGCCTTCEEEECC
T ss_pred CcCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHCCCEEeccccee-cCCEEE-EECCCCHHH-HhhcCCCcEEEEEe
Confidence 35677777776654 55542 3466676654 45 899876 444455444 66665689999999
Q ss_pred ccccCccchhhHHhcCceee---cCCCC-Ch----hhHHHHHH--HHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 161 GVGIDNVDLQAATEFGCLVV---NAPIA-NT----VAAAEHGI--ALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 161 g~GvD~iD~~aa~~~GI~V~---n~p~~-n~----~~vAE~~l--al~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
..+.|+.+++++.++||.+. +.+.. .. .++++.+- +.++++. .+..... ..+.|.. ...++.++
T Consensus 94 ~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~-~l~~~~~--g~~~~~~---~~~~l~~~ 167 (369)
T 2eez_A 94 HLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQ-FLEKPKG--GRGVLLG---GVPGVAPA 167 (369)
T ss_dssp CGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHH-HTSGGGT--SCCCCTT---CBTBBCCC
T ss_pred cccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHH-HHHHhcC--CCceecC---CCCCCCCC
Confidence 99999999999999999998 55542 11 33444333 4443332 2322210 0112221 11368999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-cCCe-------ecCHHHHhccCCEEEEccCCCc-ccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-VGVE-------LVSFDQALATADFISLHMPLNP-TTSKI 300 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-~g~~-------~~~l~ell~~aDvV~l~~Plt~-~T~~l 300 (656)
+++|+|.|.||+.+|+.++++|++|+++|++.. .+.+.+ .|.. ..+++++++++|+|+.|+|... .+..+
T Consensus 168 ~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~l 247 (369)
T 2eez_A 168 SVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKL 247 (369)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CC
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchh
Confidence 999999999999999999999999999998752 233333 4543 1257788899999999999765 57788
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEE---------EcCCCCC
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVT---------VTPHLGA 371 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvi---------lTPH~g~ 371 (656)
+.++.++.||+|.+|||++. ..| |+ +|++ ||.+.+.|++..+++. +|||.++
T Consensus 248 i~~~~l~~mk~gg~iV~v~~-------------~~g---g~-~d~~--ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as 308 (369)
T 2eez_A 248 VTRDMLSLMKEGAVIVDVAV-------------DQG---GC-VETI--RPTTHAEPTYVVDGVVHYGVANMPGAVPRTST 308 (369)
T ss_dssp SCHHHHTTSCTTCEEEECC--------------------------------------CEETTEEEECCSCSGGGSHHHHH
T ss_pred HHHHHHHhhcCCCEEEEEec-------------CCC---CC-CCcc--cCCCCCCCEEEECCEEEEeeCCcchhcHHHHH
Confidence 89999999999999999982 112 44 8988 6665678899889998 7899877
Q ss_pred C--cHHHHHHHHHHHHHHHHHHHcCCCCCcccc
Q 006212 372 S--TKEAQEGVAIEIAEAVVGALRGELSATAIN 402 (656)
Q Consensus 372 ~--T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn 402 (656)
. +.+....+...+.+++..++.++...+.+|
T Consensus 309 ~~~~~~~~~~l~~l~~~g~~~~~~~~~l~~~~~ 341 (369)
T 2eez_A 309 FALTNQTLPYVLKLAEKGLDALLEDAALLKGLN 341 (369)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHSCHHHHTTEE
T ss_pred HHHHHHHHHHHHHHHhcChhhhhcChHHhcCEE
Confidence 4 456667777777777766666665666655
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=2.4e-18 Score=187.59 Aligned_cols=220 Identities=18% Similarity=0.200 Sum_probs=157.1
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHHhh---------cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 99 LGEAGLAILRSFG-NVECL------YDLSPEALCEK---------ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~eel~~~---------i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
+.|+....|...+ +|.+. ..++.++..+. +-++|+++.. .. .+.+.++.+++++++|+..+.
T Consensus 25 ltP~~v~~L~~~G~~V~ve~~ag~~~gf~d~~y~~aGa~i~~~~~~~~adiil~v-k~-p~~~~i~~l~~~~~li~~~~~ 102 (401)
T 1x13_A 25 ATPKTVEQLLKLGFTVAVESGAGQLASFDDKAFVQAGAEIVEGNSVWQSEIILKV-NA-PLDDEIALLNPGTTLVSFIWP 102 (401)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHHTCEEECGGGGGSSSEEECS-SC-CCHHHHTTCCTTCEEEECCCG
T ss_pred CCHHHHHHHHHCCCEEEEEECCCcccCCChHHHHHCCCEEeccHHHhcCCeEEEe-CC-CCHHHHHHhcCCCcEEEEecC
Confidence 4666666665543 45442 24566665432 3348987743 23 357778877678999999999
Q ss_pred ccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhH--HHHHHHcccccccccc-cc-----ccCCCEEEE
Q 006212 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQ--ADASIKAGKWLRSKYV-GV-----SLVGKTLAV 234 (656)
Q Consensus 163 GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~--~~~~~~~g~W~~~~~~-g~-----~l~gktvGI 234 (656)
|+|++|++++.++||.|. +.++|+|++.++.|.+++.+.. ....++.+.|....+. +. ++.|++|+|
T Consensus 103 ~~d~~~~~al~~~gI~v~-----~~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~~~g~l~g~~V~V 177 (401)
T 1x13_A 103 AQNPELMQKLAERNVTVM-----AMDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQITAAGKVPPAKVMV 177 (401)
T ss_dssp GGCHHHHHHHHHTTCEEE-----EGGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEE
T ss_pred CCCHHHHHHHHHCCCEEE-----EeehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCceeeccCcCCCEEEE
Confidence 999999999999999996 4566677666654333333222 1334444444211111 11 588999999
Q ss_pred EecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec----------------------------CHHHHhccCC
Q 006212 235 MGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----------------------------SFDQALATAD 285 (656)
Q Consensus 235 IGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~----------------------------~l~ell~~aD 285 (656)
+|+|.||..+++.++++|++|+++|++. ..+.+.+.|..++ +++++++.+|
T Consensus 178 iGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aD 257 (401)
T 1x13_A 178 IGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVD 257 (401)
T ss_dssp ECCSHHHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCS
T ss_pred ECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999986 3455667787644 2678888999
Q ss_pred EEEEc--cCCCccccccccHHHHhcCCCCcEEEEcC--CCchhcH
Q 006212 286 FISLH--MPLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGVIDE 326 (656)
Q Consensus 286 vV~l~--~Plt~~T~~li~~~~l~~mK~gailINva--Rg~ivde 326 (656)
+|+.| +|. ..+..+++++.++.||+|++|||++ ||+.+++
T Consensus 258 vVI~~~~~pg-~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~ 301 (401)
T 1x13_A 258 IIVTTALIPG-KPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEY 301 (401)
T ss_dssp EEEECCCCTT-SCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTT
T ss_pred EEEECCccCC-CCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCc
Confidence 99999 553 2366888999999999999999999 7776543
|
| >1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.1e-19 Score=196.51 Aligned_cols=155 Identities=21% Similarity=0.345 Sum_probs=125.4
Q ss_pred cccc-cCCCEEEEEecChhHHHHHHHHhc-CCCEEEEE-CCCCChhHHHHcCCeecCHHHHhccCCE-EEEccCCCcccc
Q 006212 223 VGVS-LVGKTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPADKARAVGVELVSFDQALATADF-ISLHMPLNPTTS 298 (656)
Q Consensus 223 ~g~~-l~gktvGIIGlG~IG~~vA~~lk~-~G~~Vi~~-d~~~~~~~a~~~g~~~~~l~ell~~aDv-V~l~~Plt~~T~ 298 (656)
.|.+ |+|||+||+|+|+||+.+|+++++ |||+|++| |++... .+...++++++++.+|. .++ +|+ ++|+
T Consensus 205 ~G~~~l~gktvgI~G~G~VG~~vA~~l~~~~G~kVv~~sD~~g~~-----~~~~gvdl~~L~~~~d~~~~l-~~l-~~t~ 277 (419)
T 1gtm_A 205 LGWDTLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGI-----YNPDGLNADEVLKWKNEHGSV-KDF-PGAT 277 (419)
T ss_dssp TTCSCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEE-----EEEEEECHHHHHHHHHHHSSS-TTC-TTSE
T ss_pred hCCcccCCCEEEEEcCCHHHHHHHHHHHHhcCCEEEEEeCCCccc-----cCccCCCHHHHHHHHHhcCEe-ecC-ccCe
Confidence 3667 999999999999999999999999 99999999 554310 11123477777775553 233 576 6788
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC-CccccCCcEEEcCCC----C---
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD-SKLVQHENVTVTPHL----G--- 370 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~-~~L~~~~nvilTPH~----g--- 370 (656)
+ ++.+.|..||+ .++|||+||++||+++ +++|+.+.|++++ +||++.+ ++||..+|+++|||+ |
T Consensus 278 ~-i~~~~l~~mk~-dilIn~ArG~~Vde~a-~~aL~~~~I~~aA-----neP~t~~a~~ll~~~~V~itPhiaaNaGGvt 349 (419)
T 1gtm_A 278 N-ITNEELLELEV-DVLAPAAIEEVITKKN-ADNIKAKIVAEVA-----NGPVTPEADEILFEKGILQIPDFLCNAGGVT 349 (419)
T ss_dssp E-ECHHHHHHSCC-SEEEECSCSCCBCTTG-GGGCCCSEEECCS-----SSCBCHHHHHHHHHTTCEEECHHHHTTHHHH
T ss_pred e-eCHHHHHhCCC-CEEEECCCcccCCHHH-HHHhcCCEEEEee-----CCCCCcchHHHHhcCCEEEECchhhhCCcce
Confidence 8 78889999998 5999999999999999 6899999999887 8887543 689999999999999 6
Q ss_pred --------------CCcHHHHHHHHHHHHHHHHHHH
Q 006212 371 --------------ASTKEAQEGVAIEIAEAVVGAL 392 (656)
Q Consensus 371 --------------~~T~ea~~~~~~~~~~~i~~~l 392 (656)
+.++|.++++...+.+++.+++
T Consensus 350 ~s~~E~~qn~~~~~w~~~ev~~~l~~~m~~~~~~~~ 385 (419)
T 1gtm_A 350 VSYFEWVQNITGYYWTIEEVRERLDKKMTKAFYDVY 385 (419)
T ss_dssp HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeehhhhcccccccCHHHHHHHHHHHHHHHHHHHH
Confidence 6677888888877777777776
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=3e-17 Score=177.93 Aligned_cols=220 Identities=18% Similarity=0.232 Sum_probs=155.5
Q ss_pred CCHhHHHHhhcCC-cEEEe------cCCCHhHHH-----------hhcCCCeEEEEcCCCCC----CHHHHHhcCCccee
Q 006212 99 LGEAGLAILRSFG-NVECL------YDLSPEALC-----------EKISQCDALIVRSGTKV----TRSVFEAANGKLKV 156 (656)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~------~~~~~eel~-----------~~i~~~d~liv~~~~~v----~~e~l~~~~~~LK~ 156 (656)
+.|+....|.+.+ +|.+. ..++.++.. +.+.++|+++... .++ +++.++.+++++++
T Consensus 18 l~P~~v~~L~~~G~~V~ve~~ag~~~~~~d~~y~~aGa~i~~~~~~~~~~adiil~v~-~p~~~~~~~~~i~~l~~~~~~ 96 (384)
T 1l7d_A 18 ISPEVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQ-RPMTAEEGTDEVALIKEGAVL 96 (384)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEE-CCCCGGGSCCGGGGSCTTCEE
T ss_pred CCHHHHHHHHhCCCEEEEEcCCCccCCCCHHHHHHCCCEEecChhhhhcCCCEEEEec-CcccccCCHHHHHhhccCCEE
Confidence 5666666666554 44442 245555554 4567899988653 455 67888888768999
Q ss_pred EEecccccCccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccccc-----c-cccCCC
Q 006212 157 VGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV-----G-VSLVGK 230 (656)
Q Consensus 157 I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~-----g-~~l~gk 230 (656)
|+..+.+.|+.|++++.++||.++|. ......++++.+. +|+..+++ ..+..+..+.|....+. + .++.|+
T Consensus 97 i~~~~~~~~~~~~~~~~~~gi~~~~~-e~~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~~l~g~ 173 (384)
T 1l7d_A 97 MCHLGALTNRPVVEALTKRKITAYAM-ELMPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAGTVPPA 173 (384)
T ss_dssp EEECCGGGCHHHHHHHHHTTCEEEEG-GGCCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTEEECCC
T ss_pred EEEecccCCHHHHHHHHHCCCEEEEe-ccccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCCCCCCC
Confidence 99999999999999999999999974 2222212223333 22222222 23334444444321111 2 378999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec---C---------------------------HHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV---S---------------------------FDQ 279 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~---~---------------------------l~e 279 (656)
+|+|+|.|.||..+++.++++|++|+++|++. ..+.+.++|...+ . +++
T Consensus 174 ~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~ 253 (384)
T 1l7d_A 174 RVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLK 253 (384)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHH
Confidence 99999999999999999999999999999886 4456667776543 1 778
Q ss_pred HhccCCEEEEcc--CCCccccccccHHHHhcCCCCcEEEEcC--CCch
Q 006212 280 ALATADFISLHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA--RGGV 323 (656)
Q Consensus 280 ll~~aDvV~l~~--Plt~~T~~li~~~~l~~mK~gailINva--Rg~i 323 (656)
+++.+|+|+.|+ |..+ +.++++++.++.||+|++|+|++ ||+.
T Consensus 254 ~~~~aDvVi~~~~~pg~~-~~~li~~~~l~~mk~g~vivdva~~~gg~ 300 (384)
T 1l7d_A 254 ELVKTDIAITTALIPGKP-APVLITEEMVTKMKPGSVIIDLAVEAGGN 300 (384)
T ss_dssp HHTTCSEEEECCCCTTSC-CCCCSCHHHHTTSCTTCEEEETTGGGTCS
T ss_pred HhCCCCEEEECCccCCCC-CCeeeCHHHHhcCCCCCEEEEEecCCCCC
Confidence 889999999888 4332 45788999999999999999998 6654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=7.3e-17 Score=175.91 Aligned_cols=182 Identities=20% Similarity=0.296 Sum_probs=132.0
Q ss_pred CeEEEEcCCCCCCHHHHHhcC---CcceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhch
Q 006212 131 CDALIVRSGTKVTRSVFEAAN---GKLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNV 205 (656)
Q Consensus 131 ~d~liv~~~~~v~~e~l~~~~---~~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i 205 (656)
.+.++ ..+..++.-+-.+.+ ++++-++ -.++|+..+. +.++.+.+|+|+|++...+....+...+..-++.+.+
T Consensus 123 p~~il-DdGgdl~~~~h~~~~~~~~~i~G~~EeTttGv~rL~~~~~~g~L~iPVinvndsvtk~~~Dn~~Gt~~slldgi 201 (436)
T 3h9u_A 123 PNMLL-DDGGDLTNYVLDECKELDGKIYGVSEETTTGVKNLYKRLQRGKLTIPAMNVNDSVTKSKFDNLYGCRESLVDGI 201 (436)
T ss_dssp CSEEE-ESSSHHHHHHHHHC-CCTTTCCCEEECSHHHHHHHHHHHHHTCCCSCEEECTTSHHHHTTHHHHHHHHHHHHHH
T ss_pred CceEe-ccccHHHHHHHHHhHHHHhhccceeeccCcChHHHHHHHHcCCCCCceEeechhhhhhhhhccccchHHHHHHH
Confidence 45444 444445444444332 2344443 3577777653 4567789999999986555443333332222222111
Q ss_pred hHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccC
Q 006212 206 SQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATA 284 (656)
Q Consensus 206 ~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~a 284 (656)
. + ..+.++.||||||+|+|.||+.+|++|++||++|+++|++. ....+...|+..+++++++++|
T Consensus 202 ~------r--------atg~~L~GktVgIiG~G~IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~~sL~eal~~A 267 (436)
T 3h9u_A 202 K------R--------ATDVMIAGKTACVCGYGDVGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQVLLVEDVVEEA 267 (436)
T ss_dssp H------H--------HHCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTC
T ss_pred H------H--------hcCCcccCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCeecCHHHHHhhC
Confidence 1 1 13678999999999999999999999999999999999976 3344667888888999999999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch-hcHHHHHH
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV-IDEEALVR 331 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i-vde~aL~~ 331 (656)
|+|++ ++.|.++++++.|+.||+|++|+|+|||.+ ||.++|.+
T Consensus 268 DVVil----t~gt~~iI~~e~l~~MK~gAIVINvgRg~vEID~~~L~~ 311 (436)
T 3h9u_A 268 HIFVT----TTGNDDIITSEHFPRMRDDAIVCNIGHFDTEIQVAWLKA 311 (436)
T ss_dssp SEEEE----CSSCSCSBCTTTGGGCCTTEEEEECSSSGGGBCHHHHHH
T ss_pred CEEEE----CCCCcCccCHHHHhhcCCCcEEEEeCCCCCccCHHHHHh
Confidence 99997 446889999999999999999999999997 89999865
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-18 Score=182.88 Aligned_cols=245 Identities=18% Similarity=0.154 Sum_probs=165.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCC--e-ecCHHH-HhccCCEEEEccCCCcccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGV--E-LVSFDQ-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~--~-~~~l~e-ll~~aDvV~l~~Plt~~T~ 298 (656)
++..++|||||+|.||+++|+.++..|+ +|++||++. ..+.+.+.|+ . ..++++ ++++||+|++|+|.. .+.
T Consensus 30 ~~~~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~~-~~~ 108 (314)
T 3ggo_A 30 SLSMQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFR 108 (314)
T ss_dssp CCSCSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCGG-GHH
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCHH-HHH
Confidence 3445899999999999999999999999 999999986 4456677777 3 347888 899999999999954 344
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHH
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKE 375 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E---P~~~~~~L~~~~nvilTPH~g~~T~e 375 (656)
.++ ++....++++++|+|++..+....+++.+.+....+.+. -+++.| |..+...||+...+++||+-+.. .+
T Consensus 109 ~vl-~~l~~~l~~~~iv~d~~Svk~~~~~~~~~~l~~~~v~~h--Pm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~-~~ 184 (314)
T 3ggo_A 109 EIA-KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGH--PIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KK 184 (314)
T ss_dssp HHH-HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEE--ECCCCCCCSGGGCCTTTTTTCEEEECCCTTSC-HH
T ss_pred HHH-HHHhhccCCCcEEEECCCCcHHHHHHHHHhcCCCEEecC--cccCCcccchhhhhhhhhcCCEEEEEeCCCCC-HH
Confidence 444 455667999999999998765445566665544333322 233333 33456689999999999985443 33
Q ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chHH---HHHHHhH------HHHHhhcCCCCceE
Q 006212 376 AQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYVV---LAKKLGR------LAVQLVSGGSGIKS 440 (656)
Q Consensus 376 a~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~~---laerlG~------l~~qL~~g~~~~k~ 440 (656)
+. +.+.++++.-..... .+.++.++.+. |++- ++..+.. .+.+|+++ +|++
T Consensus 185 ~~--------~~v~~l~~~~G~~v~----~~~~~~hD~~~a~~s~lph~~a~~l~~~~~~~~~~~~~~~~~a~~--~frd 250 (314)
T 3ggo_A 185 RL--------KLVKRVWEDVGGVVE----YMSPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKD 250 (314)
T ss_dssp HH--------HHHHHHHHHTTCEEE----ECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCCSSCCGGGCCTT--TTTT
T ss_pred HH--------HHHHHHHHHcCCEEE----EcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHhhccc--cHHH
Confidence 32 233333332222111 23334443322 2221 1111111 22457777 9999
Q ss_pred EEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCc
Q 006212 441 VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGL 490 (656)
Q Consensus 441 i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI 490 (656)
+++++.+++. +|.++...|+..+...|+.+.++...+.++..-.+..++
T Consensus 251 ~tRia~~~p~-~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l 299 (314)
T 3ggo_A 251 FTRIAKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEEL 299 (314)
T ss_dssp HHHHTTSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHH
T ss_pred HHHHhcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999998 999999999999888998888876777776665444444
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=99.65 E-value=4.3e-16 Score=169.71 Aligned_cols=161 Identities=22% Similarity=0.238 Sum_probs=120.8
Q ss_pred cceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 153 ~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++-+. -.++|+-++- +...-+..++++|+. +++..+-+-......+.+..+..+ ..+.++.||
T Consensus 183 ~i~G~~EeTtTGv~rL~~m~~~g~L~~PvinVn----ds~tK~~fDn~yG~~eslvdgI~R----------atg~~L~GK 248 (464)
T 3n58_A 183 AIKGVTEETTTGVNRLYQLQKKGLLPFPAINVN----DSVTKSKFDNKYGCKESLVDGIRR----------GTDVMMAGK 248 (464)
T ss_dssp HCCEEEECSHHHHHHHHHHHHHTCCCSCEEECT----TSHHHHTTHHHHHHHHHHHHHHHH----------HHCCCCTTC
T ss_pred hccceeeccccchHHHHHHHHcCCCCCCEEeec----cHhhhhhhhhhhcchHHHHHHHHH----------hcCCcccCC
Confidence 344443 3577776642 233345567788775 455555555555444333322211 236789999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
|+||+|+|.||+.+|+++++|||+|+++|+.+ ....+...|++.+++++++++||+|+++. .|+++|+++.|+.|
T Consensus 249 TVgVIG~G~IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~vv~LeElL~~ADIVv~at----gt~~lI~~e~l~~M 324 (464)
T 3n58_A 249 VAVVCGYGDVGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEVVTLDDAASTADIVVTTT----GNKDVITIDHMRKM 324 (464)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECCHHHHGGGCSEEEECC----SSSSSBCHHHHHHS
T ss_pred EEEEECcCHHHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCceeccHHHHHhhCCEEEECC----CCccccCHHHHhcC
Confidence 99999999999999999999999999998765 23345667888889999999999999864 47899999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHHHH
Q 006212 310 KKGVRIVNVARGGV-IDEEALVR 331 (656)
Q Consensus 310 K~gailINvaRg~i-vde~aL~~ 331 (656)
|+|++|||+|||.+ +|.++|.+
T Consensus 325 K~GAILINvGRgdvEID~~aL~~ 347 (464)
T 3n58_A 325 KDMCIVGNIGHFDNEIQVAALRN 347 (464)
T ss_dssp CTTEEEEECSSSTTTBTCGGGTT
T ss_pred CCCeEEEEcCCCCcccCHHHHHh
Confidence 99999999999998 88888753
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.64 E-value=7.3e-18 Score=180.02 Aligned_cols=250 Identities=12% Similarity=0.076 Sum_probs=161.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhcc----CCEEEEccCCCcccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALAT----ADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~----aDvV~l~~Plt~~T~~li~ 302 (656)
-++|||||+|+||+++|+.|+..|++|++||++. ..+.+.+.|+.. .++++++++ ||+|++|+|. ..+..++.
T Consensus 8 ~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP~-~~~~~vl~ 86 (341)
T 3ktd_A 8 SRPVCILGLGLIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVPM-TAIDSLLD 86 (341)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSCH-HHHHHHHH
T ss_pred CCEEEEEeecHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCCH-HHHHHHHH
Confidence 3579999999999999999999999999999886 455677788864 478888765 6999999994 45566652
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQE 378 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~E---P~~~~~~L~~~~nvilTPH~g~~T~ea~~ 378 (656)
.+..++++++|+|++..+....+++.+.+.. ..+.+. =+++.| |..++..||+..++++||+-+... +...
T Consensus 87 --~l~~~~~~~iv~Dv~Svk~~i~~~~~~~~~~~~~v~~H--PmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~-e~~~ 161 (341)
T 3ktd_A 87 --AVHTHAPNNGFTDVVSVKTAVYDAVKARNMQHRYVGSH--PMAGTANSGWSASMDGLFKRAVWVVTFDQLFDG-TDIN 161 (341)
T ss_dssp --HHHHHCTTCCEEECCSCSHHHHHHHHHTTCGGGEECEE--ECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSS-CCCC
T ss_pred --HHHccCCCCEEEEcCCCChHHHHHHHHhCCCCcEecCC--ccccccccchhhhhhHHhcCCeEEEEeCCCCCh-hhhc
Confidence 3344699999999997665444455444432 223221 233333 224567899999999999854332 1000
Q ss_pred HHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------chH------HHHHHHhHHHHHhhcCCCCceEEEEEEe
Q 006212 379 GVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------PYV------VLAKKLGRLAVQLVSGGSGIKSVKLIYR 446 (656)
Q Consensus 379 ~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p~~------~laerlG~l~~qL~~g~~~~k~i~i~~~ 446 (656)
.-.....+.+.++++.-..... .+.++.++.+. |++ .....-...+.+|+++ +|+++++++.
T Consensus 162 ~~~~~~~~~v~~l~~~~Ga~v~----~~~~~~HD~~~A~vshlPh~ia~aL~~~~~~~~~~~~~laa~--gfrd~tRia~ 235 (341)
T 3ktd_A 162 STWISIWKDVVQMALAVGAEVV----PSRVGPHDAAAARVSHLTHILAETLAIVGDNGGALSLSLAAG--SYRDSTRVAG 235 (341)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEE----ECCHHHHHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHHCCH--HHHHHTGGGG
T ss_pred cchHHHHHHHHHHHHHcCCEEE----EeCHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHccc--cHHHHHHHhc
Confidence 0011123334444433322111 12233333222 211 1111122345678888 9999999999
Q ss_pred ecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCceE
Q 006212 447 SARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGLRI 492 (656)
Q Consensus 447 Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI~v 492 (656)
+++. +|.++...|+..+...|+.+.++...+.++..-.+ .++.-
T Consensus 236 s~p~-lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d-~~l~~ 279 (341)
T 3ktd_A 236 TDPG-LVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIEQ 279 (341)
T ss_dssp SCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHH
T ss_pred CCHH-HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHH
Confidence 9998 99999999998888889888887666666665444 44443
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.6e-17 Score=179.56 Aligned_cols=210 Identities=17% Similarity=0.167 Sum_probs=163.3
Q ss_pred cceeEEecccccCccchhhHH-----hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccc----ccc
Q 006212 153 KLKVVGRAGVGIDNVDLQAAT-----EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRS----KYV 223 (656)
Q Consensus 153 ~LK~I~~~g~GvD~iD~~aa~-----~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~----~~~ 223 (656)
.+++|.+.|+|+|++++.++. ++++.++|.+|+ ..+++++.+.+++.+.|++....... .+.|.-. ...
T Consensus 81 a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~a 158 (404)
T 1gpj_A 81 AVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVELA 158 (404)
T ss_dssp HHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHHH
T ss_pred HhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHHH
Confidence 688999999999999999998 899999999988 57899999999999999987664333 4455311 011
Q ss_pred c---cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCee---cCHHHHhccCCEEEEccCCC
Q 006212 224 G---VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVEL---VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 224 g---~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~---~~l~ell~~aDvV~l~~Plt 294 (656)
+ .++.|++|+|||+|.||+.+++.++.+|+ +|+++|++... +.+.+.|... .++.+++.++|+|+.|+|.+
T Consensus 159 ~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~ 238 (404)
T 1gpj_A 159 ERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAP 238 (404)
T ss_dssp HHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSS
T ss_pred HHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCC
Confidence 1 14799999999999999999999999999 99999997532 3456667654 36778889999999998743
Q ss_pred ccccccccHHHHhc--CC----CCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEE--c
Q 006212 295 PTTSKIFNDETFAK--MK----KGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV--T 366 (656)
Q Consensus 295 ~~T~~li~~~~l~~--mK----~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvil--T 366 (656)
..+++...+.. || ++.+++|++ +|.+.+++++++||+++ +
T Consensus 239 ---~~~~~~~~l~~~~lk~r~~~~~v~vdia-----------------------------~P~~i~~~l~~l~~v~l~d~ 286 (404)
T 1gpj_A 239 ---HPVIHVDDVREALRKRDRRSPILIIDIA-----------------------------NPRDVEEGVENIEDVEVRTI 286 (404)
T ss_dssp ---SCCBCHHHHHHHHHHCSSCCCEEEEECC-----------------------------SSCSBCTTGGGSTTEEEEEH
T ss_pred ---CceecHHHHHHHHHhccCCCCEEEEEcc-----------------------------CCCCCCccccccCCeEEEeH
Confidence 45677777776 42 566777765 36555788999999999 9
Q ss_pred CCCCCCcHHHHH----------HHHHHHHHHHHHHHcCCC
Q 006212 367 PHLGASTKEAQE----------GVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 367 PH~g~~T~ea~~----------~~~~~~~~~i~~~l~g~~ 396 (656)
||++..+.++++ .+..+.++++..|+.+..
T Consensus 287 d~l~~~~~~~~~~r~~~~~~~~~li~q~~~~f~~w~~~~~ 326 (404)
T 1gpj_A 287 DDLRVIARENLERRRKEIPKVEKLIEEELSTVEEELEKLK 326 (404)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999998888765 455566677777877643
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.7e-15 Score=158.91 Aligned_cols=159 Identities=20% Similarity=0.279 Sum_probs=115.0
Q ss_pred cceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 153 ~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++-+. -.++|+-++- +...-+..++|+|+.+..+..--+ ........+..+ ++. ..+..+.||
T Consensus 156 ~i~G~~EeTttGv~rl~~~~~~g~L~~Pvi~vnds~tK~~fD----n~yGt~~s~~~g---i~r-------at~~~L~Gk 221 (435)
T 3gvp_A 156 KIKGIVEESVTGVHRLYQLSKAGKLCVPAMNVNDSVTKQKFD----NLYCCRESILDG---LKR-------TTDMMFGGK 221 (435)
T ss_dssp TCCEEEECCHHHHHHHTCC--CCCCCSCEEECTTCHHHHHHH----THHHHHHHHHHH---HHH-------HHCCCCTTC
T ss_pred hcceeEeccchhHHHHHHHHHcCCCCCCEEEecchhhhhhhh----hhhhhHHHHHHH---HHH-------hhCceecCC
Confidence 344443 3566765542 333446779999987754444333 222111111111 110 136789999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|+|+|.||+.+|++|++||++|+++|++. ....+...|+...++++++++||+|++| +.|.++++.+.|+.|
T Consensus 222 tV~ViG~G~IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v~~Leeal~~ADIVi~a----tgt~~lI~~e~l~~M 297 (435)
T 3gvp_A 222 QVVVCGYGEVGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRLVKLNEVIRQVDIVITC----TGNKNVVTREHLDRM 297 (435)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEEC----SSCSCSBCHHHHHHS
T ss_pred EEEEEeeCHHHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEeccHHHHHhcCCEEEEC----CCCcccCCHHHHHhc
Confidence 99999999999999999999999999999875 2345667788888999999999999995 457899999999999
Q ss_pred CCCcEEEEcCCCch-hcHHHH
Q 006212 310 KKGVRIVNVARGGV-IDEEAL 329 (656)
Q Consensus 310 K~gailINvaRg~i-vde~aL 329 (656)
|+|++|+|+|||.+ +|.++|
T Consensus 298 K~gailINvgrg~~EId~~~L 318 (435)
T 3gvp_A 298 KNSCIVCNMGHSNTEIDVASL 318 (435)
T ss_dssp CTTEEEEECSSTTTTBTGGGG
T ss_pred CCCcEEEEecCCCccCCHHHH
Confidence 99999999999988 666665
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.52 E-value=5.4e-15 Score=152.46 Aligned_cols=234 Identities=18% Similarity=0.139 Sum_probs=149.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCC-ChhHHHHcCCe---ecCHHHHhc-cCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYA-PADKARAVGVE---LVSFDQALA-TADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~-~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|.||+.+|+.|+..|+ +|++||++. ..+.+.+.|+. ..+++++++ +||+|++|+|.. .+..++.
T Consensus 2 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~~-~~~~v~~ 80 (281)
T 2g5c_A 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPVR-TFREIAK 80 (281)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCHH-HHHHHHH
T ss_pred cEEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCHH-HHHHHHH
Confidence 589999999999999999998888 999999975 33445566764 337888999 999999999944 4555553
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC---CCCCCCccccCCcEEEcCCCCCCcHHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE---PPAKDSKLVQHENVTVTPHLGASTKEAQEG 379 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E---P~~~~~~L~~~~nvilTPH~g~~T~ea~~~ 379 (656)
+....++++++|+|++++.....+.+.+.+..+.+.+ .-+++.| |..+...|++..+++++||.++. .+..
T Consensus 81 -~l~~~l~~~~iv~~~~~~~~~~~~~l~~~l~~~~v~~--~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~-~~~~-- 154 (281)
T 2g5c_A 81 -KLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGG--HPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTD-KKRL-- 154 (281)
T ss_dssp -HHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECE--EEECCCSCCSGGGCCSSTTTTCEEEECCCSSSC-HHHH--
T ss_pred -HHHhhCCCCcEEEECCCCcHHHHHHHHHhccccceee--ccccCCccCChhhhhhHHhCCCCEEEecCCCCC-HHHH--
Confidence 3455689999999999887666677777776543322 1233333 33345678888899999997665 2222
Q ss_pred HHHHHHHHHHHHHcCCCCCccccCCCCChhhhh-------hccchH--HHHHHHhH------HHHHhhcCCCCceEEEEE
Q 006212 380 VAIEIAEAVVGALRGELSATAINAPMVPSEVLS-------ELAPYV--VLAKKLGR------LAVQLVSGGSGIKSVKLI 444 (656)
Q Consensus 380 ~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~-------~l~p~~--~laerlG~------l~~qL~~g~~~~k~i~i~ 444 (656)
+.+.++++.-.....+. ..+.++ .+..|+ .+.+.++. .+.+|+++ +++++++.
T Consensus 155 ------~~v~~l~~~~g~~~~~~----~~~~~d~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~ 222 (281)
T 2g5c_A 155 ------KLVKRVWEDVGGVVEYM----SPELHDYVFGVVSHLPHAVAFALVDTLIHMSTPEVDLFKYPGG--GFKDFTRI 222 (281)
T ss_dssp ------HHHHHHHHHTTCEEEEC----CHHHHHHHHHHHTHHHHHHHHHHHHHHHHHCBTTBCGGGCCTT--TGGGC---
T ss_pred ------HHHHHHHHHcCCEEEEc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHhhccc--cHHHHhHH
Confidence 23333343322221111 112211 111222 33333432 23456666 89999999
Q ss_pred EeecCCCCCcccccccHHHHHHhhhhhhhccccccchHh
Q 006212 445 YRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (656)
Q Consensus 445 ~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~ 483 (656)
..+++. +|.+...++...+...|+.+..+.-.+.++..
T Consensus 223 ~~~~p~-~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~ 260 (281)
T 2g5c_A 223 AKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIV 260 (281)
T ss_dssp CCSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 89999999987655556555554334444433
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6e-14 Score=145.27 Aligned_cols=234 Identities=16% Similarity=0.125 Sum_probs=148.9
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|||||+|.||+.+|+.+... |++|++||++. ..+.+.+.|+. ..++++++++||+|++|+|... ...++.
T Consensus 7 ~~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~~~-~~~v~~- 84 (290)
T 3b1f_A 7 KTIYIAGLGLIGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPIKK-TIDFIK- 84 (290)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCHHH-HHHHHH-
T ss_pred ceEEEEeeCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCHHH-HHHHHH-
Confidence 6899999999999999999855 78999999875 33444556762 3478888999999999999443 344443
Q ss_pred HHHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc-C-CeEE----EEeeccCCCCCCCCCccccCCcEEEcCCCCCCcHHH
Q 006212 304 ETFAK-MKKGVRIVNVARGGVIDEEALVRALDS-G-VVAQ----AALDVFTEEPPAKDSKLVQHENVTVTPHLGASTKEA 376 (656)
Q Consensus 304 ~~l~~-mK~gailINvaRg~ivde~aL~~aL~~-g-~i~g----A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ea 376 (656)
+.... ++++++|+|++++.....+.+.+.+.. + ++.+ ++.++.+ |......|++.++++++||.++.. +
T Consensus 85 ~l~~~~l~~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g--~~~a~~~l~~g~~~~~~~~~~~~~-~- 160 (290)
T 3b1f_A 85 ILADLDLKEDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSG--AVAANVNLFENAYYIFSPSCLTKP-N- 160 (290)
T ss_dssp HHHTSCCCTTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CC--TTSCCTTTTTTSEEEEEECTTCCT-T-
T ss_pred HHHhcCCCCCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcch--HHHhhHHHhCCCeEEEecCCCCCH-H-
Confidence 34456 899999999998777666777777765 2 2222 2233323 334456788889999999976652 2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhh-------ccch-----HHHHHHHh---HHHHHhhcCCCCceEE
Q 006212 377 QEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSE-------LAPY-----VVLAKKLG---RLAVQLVSGGSGIKSV 441 (656)
Q Consensus 377 ~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~-------l~p~-----~~laerlG---~l~~qL~~g~~~~k~i 441 (656)
..+.+.++++.-.....+ ++++.++. +.|. ++....+| ..+.+|+++ +|+++
T Consensus 161 -------~~~~v~~l~~~~G~~~~~----~~~~~~d~~~a~~s~~~~~~a~~~~~~~~~~g~~~~~~~~la~~--~~~~~ 227 (290)
T 3b1f_A 161 -------TIPALQDLLSGLHARYVE----IDAAEHDCVTSQISHFPHIIASSLMKQAGDFSESHEMTKHFAAG--GFRDM 227 (290)
T ss_dssp -------HHHHHHHHTGGGCCEEEE----CCHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHCTHHHHHCCH--HHHHT
T ss_pred -------HHHHHHHHHHHcCCEEEE----cCHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccchhhHHhhccc--cHHhh
Confidence 233455555443322111 12222221 2222 22222222 234567776 78887
Q ss_pred EEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHh
Q 006212 442 KLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADF 483 (656)
Q Consensus 442 ~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~ 483 (656)
++.+.+++. +|.+...++...+...|+.+..+.-.+.++..
T Consensus 228 ~rla~~~p~-~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~ 268 (290)
T 3b1f_A 228 TRIAESEPG-MWTSILLTNQEAVLDRIENFKQRLDEVSNLIK 268 (290)
T ss_dssp TGGGGSCHH-HHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhcCCHH-HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777887 89999999997766667666664334444443
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.35 E-value=1.6e-13 Score=143.38 Aligned_cols=240 Identities=13% Similarity=0.093 Sum_probs=141.6
Q ss_pred hHHHHHHHccccccccccccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccC
Q 006212 206 SQADASIKAGKWLRSKYVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATA 284 (656)
Q Consensus 206 ~~~~~~~~~g~W~~~~~~g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~a 284 (656)
.++..++++..|..... ..++||||| +|.||+++|+.++..|++|.+||+... .++++.+++|
T Consensus 3 ~~~~~~~~~~~~~~~~~-----~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~~-----------~~~~~~~~~a 66 (298)
T 2pv7_A 3 RESYANENQFGFKTINS-----DIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDW-----------AVAESILANA 66 (298)
T ss_dssp ----------CCCCSCT-----TCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCG-----------GGHHHHHTTC
T ss_pred hhHHhhhhccCccccCC-----CCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCcc-----------cCHHHHhcCC
Confidence 34556667778964221 357899999 999999999999999999999998642 1467889999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCC-CCCccccCCcE
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPA-KDSKLVQHENV 363 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~-~~~~L~~~~nv 363 (656)
|+|++|+|.. .+..++. +....++++++|+|+++.+....+++.+.+. . ++....|.. +..+++...++
T Consensus 67 DvVilavp~~-~~~~vl~-~l~~~l~~~~iv~~~~svk~~~~~~~~~~~~-~-------~~v~~hP~~g~~~~~~~g~~~ 136 (298)
T 2pv7_A 67 DVVIVSVPIN-LTLETIE-RLKPYLTENMLLADLTSVKREPLAKMLEVHT-G-------AVLGLHPMFGADIASMAKQVV 136 (298)
T ss_dssp SEEEECSCGG-GHHHHHH-HHGGGCCTTSEEEECCSCCHHHHHHHHHHCS-S-------EEEEEEECSCTTCSCCTTCEE
T ss_pred CEEEEeCCHH-HHHHHHH-HHHhhcCCCcEEEECCCCCcHHHHHHHHhcC-C-------CEEeeCCCCCCCchhhcCCeE
Confidence 9999999954 3666663 3445689999999998877654555554432 1 122223321 12357777889
Q ss_pred EEcCCCCCCcHHHHHHHHHHHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------c-hH--HHHHHHh------HHH
Q 006212 364 TVTPHLGASTKEAQEGVAIEIAEAVVGALRGELSATAINAPMVPSEVLSELA------P-YV--VLAKKLG------RLA 428 (656)
Q Consensus 364 ilTPH~g~~T~ea~~~~~~~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p-~~--~laerlG------~l~ 428 (656)
++|||- +.+.. +.+.++++.-..... .++++.++.+. | |+ .+++.+. ..+
T Consensus 137 ~l~~~~---~~~~~--------~~v~~l~~~~G~~~~----~~~~~~~d~~~a~~~~~p~~~a~~l~~~l~~~g~~~~~~ 201 (298)
T 2pv7_A 137 VRCDGR---FPERY--------EWLLEQIQIWGAKIY----QTNATEHDHNMTYIQALRHFSTFANGLHLSKQPINLANL 201 (298)
T ss_dssp EEEEEE---CGGGT--------HHHHHHHHHTTCEEE----ECCHHHHHHHHHHHTHHHHHHHHHHHHHHTTSSCCHHHH
T ss_pred EEecCC---CHHHH--------HHHHHHHHHcCCEEE----ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 999974 23322 223333332222111 12222222211 2 21 2333332 345
Q ss_pred HHhhcCCCCceE----EEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhccCc
Q 006212 429 VQLVSGGSGIKS----VKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQKGL 490 (656)
Q Consensus 429 ~qL~~g~~~~k~----i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~GI 490 (656)
.+|+++ +|++ +++.+.+++. +|.+...+|...+. .|+.+.++.-.+.++..-.+..++
T Consensus 202 ~~la~~--~f~~~~~~~~ria~~~p~-~~~di~~sn~~~~~-~l~~~~~~l~~~~~~l~~~d~~~l 263 (298)
T 2pv7_A 202 LALSSP--IYRLELAMIGRLFAQDAE-LYADIIMDKSENLA-VIETLKQTYDEALTFFENNDRQGF 263 (298)
T ss_dssp HHTCCH--HHHHHHHHHHHHHTSCHH-HHHHHHC----CHH-HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhcCH--HHHHHHHHHHHHhcCCHH-HHHHHHHHCHHHHH-HHHHHHHHHHHHHHHHHcCCHHHH
Confidence 667777 8887 7777888887 99999999988888 777776654455555443333333
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=99.24 E-value=4e-10 Score=121.37 Aligned_cols=216 Identities=14% Similarity=0.127 Sum_probs=133.8
Q ss_pred CCHhHHHHhhcCC-cEEEec------CCCHhHHHhh---c---CCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccC
Q 006212 99 LGEAGLAILRSFG-NVECLY------DLSPEALCEK---I---SQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGID 165 (656)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~~------~~~~eel~~~---i---~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD 165 (656)
+.|+....|.+.+ +|.+.. .++.++..+. + -.+|+|+- - ...+.+-++.+.++-.+++..---.|
T Consensus 40 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~adiIlk-V-k~p~~~e~~~l~~g~~l~~~lh~~~~ 117 (381)
T 3p2y_A 40 LVPKVVEKLSARGLEVVVESAAGAGALFSDADYERAGATIGDPWPADVVVK-V-NPPTSDEISQLKPGSVLIGFLAPRTQ 117 (381)
T ss_dssp SCHHHHHHHHHTTCEEEECTTTTGGGTCCHHHHHHTTCEESCCTTSSEEEC-S-SCCCHHHHTTSCTTCEEEECCCTTTC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCChHHHHHCCCEEeeeecCCEEEE-e-CCCChhHHhhccCCCEEEEEeccccC
Confidence 5677777776554 555532 3566666441 1 12676652 1 23556667766667777766554445
Q ss_pred ccchhhHHhcCceeecCCCCC----hhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecChh
Q 006212 166 NVDLQAATEFGCLVVNAPIAN----TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKV 240 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n----~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~I 240 (656)
.=-++++.++||...---... ..+. .++.-|-.++-+..-......-++.......+ ..+.+++|+|||+|.|
T Consensus 118 ~~l~~~l~~~~it~ia~E~i~~~~~~~~l--~~l~~~s~iAGy~Av~~aa~~l~~~~~~l~~~~~~v~~~kV~ViG~G~i 195 (381)
T 3p2y_A 118 PELASRLRIADVTAFAMESIPRISRAQTM--DALSSQANVAGYKAVLLGASLSTRFVPMLTTAAGTVKPASALVLGVGVA 195 (381)
T ss_dssp HHHHHHHHHTTCEEEEGGGCCSSGGGGGG--CHHHHHHHHHHHHHHHHHHHHCSSCSSCEECSSCEECCCEEEEESCSHH
T ss_pred HHHHHHHHHCCCeEEEeeccccccccccc--eeecchhHHHHHHHHHHHHHHhhhhhhhhhcccCCcCCCEEEEECchHH
Confidence 444688899999885332221 1110 01111111111100000111111111111111 2578999999999999
Q ss_pred HHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--------------------------CHHHHhccCCEEEEcc--
Q 006212 241 GSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--------------------------SFDQALATADFISLHM-- 291 (656)
Q Consensus 241 G~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--------------------------~l~ell~~aDvV~l~~-- 291 (656)
|..+|+.++++|++|++||++. ..+.+.+.|..++ ++++.+++||+|+.++
T Consensus 196 G~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~i 275 (381)
T 3p2y_A 196 GLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTALV 275 (381)
T ss_dssp HHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCCC
Confidence 9999999999999999999987 4456666776543 3678899999999875
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
|. ..+..+++++.++.||||++|||++
T Consensus 276 Pg-~~ap~Lvt~emv~~MkpGsVIVDvA 302 (381)
T 3p2y_A 276 PG-RPAPRLVTAAAATGMQPGSVVVDLA 302 (381)
T ss_dssp TT-SCCCCCBCHHHHHTSCTTCEEEETT
T ss_pred CC-cccceeecHHHHhcCCCCcEEEEEe
Confidence 53 2356789999999999999999997
|
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=1.4e-11 Score=129.14 Aligned_cols=113 Identities=20% Similarity=0.274 Sum_probs=95.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
|+|||||+|.||..||++|...|++|.+||++. ..+...+.|.... ++.|+++.||+|++|+|..+..+.++. ...
T Consensus 4 ~kIgfIGlG~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~ 83 (300)
T 3obb_A 4 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 83 (300)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSS
T ss_pred CEEEEeeehHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhh
Confidence 689999999999999999999999999999986 3455667788765 899999999999999998877777653 236
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD 344 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD 344 (656)
+..+++|.++||++....-+...+.+.+++..+ ..+|
T Consensus 84 ~~~~~~g~iiId~sT~~p~~~~~~a~~~~~~G~--~~lD 120 (300)
T 3obb_A 84 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL--AMLD 120 (300)
T ss_dssp TTSCCC-CEEEECSCCCHHHHHHHHHHHHTTTC--EEEE
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHcCC--EEEe
Confidence 778999999999999999999999999988766 3455
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-11 Score=129.30 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=98.6
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.++..++|||||+|.||+.+|++|...|++|++||++. ..+.+.+.|+... ++++++++||+|++|+|....++.++.
T Consensus 5 ~~~~~~~IgiIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~ 84 (306)
T 3l6d_A 5 DESFEFDVSVIGLGAMGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG 84 (306)
T ss_dssp CCCCSCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT
T ss_pred cccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc
Confidence 45667899999999999999999999999999999986 3344555687654 899999999999999996666777775
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
.+.+..+++|.++||+++....+.+.+.+.+++..+.....-|++..|
T Consensus 85 ~~~l~~~~~g~ivid~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~ 132 (306)
T 3l6d_A 85 MPGVARALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPR 132 (306)
T ss_dssp STTHHHHTTTCEEEECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGG
T ss_pred ccchhhccCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEecccccCcc
Confidence 334566789999999999999888888888876544322223555443
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.5e-11 Score=129.70 Aligned_cols=130 Identities=17% Similarity=0.160 Sum_probs=92.6
Q ss_pred HHHHcccccccccc-----ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhc
Q 006212 210 ASIKAGKWLRSKYV-----GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALA 282 (656)
Q Consensus 210 ~~~~~g~W~~~~~~-----g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~ 282 (656)
+.++...|..+.+. ......++|||||+|.||..+|++|...|++|.+||++. ..+...+.|+... +++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~ 86 (320)
T 4dll_A 7 HSSGVDLGTENLYFQSMTVESDPYARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAAR 86 (320)
T ss_dssp ----------------------CCCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHT
T ss_pred ccccccccccccceechhhccccCCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHh
Confidence 44555555544321 123456799999999999999999999999999999986 3344555677654 8999999
Q ss_pred cCCEEEEccCCCccccccccH-HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 283 TADFISLHMPLNPTTSKIFND-ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~-~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+||+|++|+|....++.++.. ..+..++++.+|||++++.+.+.+.+.+.+++..+.
T Consensus 87 ~aDvVi~~vp~~~~~~~v~~~~~~~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~~ 144 (320)
T 4dll_A 87 DADIVVSMLENGAVVQDVLFAQGVAAAMKPGSLFLDMASITPREARDHAARLGALGIA 144 (320)
T ss_dssp TCSEEEECCSSHHHHHHHHTTTCHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCE
T ss_pred cCCEEEEECCCHHHHHHHHcchhHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCCE
Confidence 999999999966566665532 456679999999999999998888888888775443
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.2e-12 Score=129.78 Aligned_cols=222 Identities=14% Similarity=0.126 Sum_probs=136.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe---ecCHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE---LVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
++|+|||+|.||+.+|+.|...|++|.+||++. ..+.+.+.|+. ..+++++ +++|+|++|+|. ..+..++ .+.
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~~-~~~~~~~-~~l 77 (279)
T 2f1k_A 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTPI-QLILPTL-EKL 77 (279)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSCH-HHHHHHH-HHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECCH-HHHHHHH-HHH
Confidence 379999999999999999999999999999875 33444556663 3478888 999999999993 3444454 344
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCC---CCCCCCCccccCCcEEEcCCCCCCcHHHHHHHHH
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE---EPPAKDSKLVQHENVTVTPHLGASTKEAQEGVAI 382 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~---EP~~~~~~L~~~~nvilTPH~g~~T~ea~~~~~~ 382 (656)
...++++++|+|++.......+.+.+.+. ..+.+ .-+++. .|......++....++++|+-+.. .+.
T Consensus 78 ~~~~~~~~~vv~~~~~~~~~~~~~~~~~~-~~~~~--~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~-~~~------ 147 (279)
T 2f1k_A 78 IPHLSPTAIVTDVASVKTAIAEPASQLWS-GFIGG--HPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD-PEQ------ 147 (279)
T ss_dssp GGGSCTTCEEEECCSCCHHHHHHHHHHST-TCEEE--EECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC-HHH------
T ss_pred HhhCCCCCEEEECCCCcHHHHHHHHHHhC-CEeec--CcccCCccCCHHHHhHHHhCCCcEEEecCCCCC-HHH------
Confidence 45689999999998776655666655443 33322 133322 232334467778889999986543 332
Q ss_pred HHHHHHHHHHcCCCCCccccCCCCChhhhhhcc------c-hH--HHHHH---Hh-----HHHHHhhcCCCCceEEEEEE
Q 006212 383 EIAEAVVGALRGELSATAINAPMVPSEVLSELA------P-YV--VLAKK---LG-----RLAVQLVSGGSGIKSVKLIY 445 (656)
Q Consensus 383 ~~~~~i~~~l~g~~~~~~Vn~p~~~~~~~~~l~------p-~~--~laer---lG-----~l~~qL~~g~~~~k~i~i~~ 445 (656)
.+.+.++++.-.....+. .....+.+. | |+ .+++. .| ..+.+|+.+ +++++++..
T Consensus 148 --~~~v~~l~~~~g~~~~~~----~~~~~~~~~~~~~~~p~~i~~al~~~~~~~~~~~~~~~~~~l~~~--~~~~~~r~~ 219 (279)
T 2f1k_A 148 --LACLRSVLEPLGVKIYLC----TPADHDQAVAWISHLPVMVSAALIQACAGEKDGDILKLAQNLASS--GFRDTSRVG 219 (279)
T ss_dssp --HHHHHHHHGGGTCEEEEC----CHHHHHHHHHHHTHHHHHHHHHHHHHHHTCSCHHHHHHHHHHCCH--HHHHHHTGG
T ss_pred --HHHHHHHHHHcCCEEEEc----CHHHHHHHHHHHhhHHHHHHHHHHHHHHhcccccchhHHHhhcCC--cccchhccc
Confidence 234445554333221111 111111111 1 11 11211 12 245567766 777766666
Q ss_pred eecCCCCCcccccccHHHHHHhhhhhhh
Q 006212 446 RSARDPDDLDTRILRAMITKGIIEPISA 473 (656)
Q Consensus 446 ~Gs~a~~~~~~~~~~~a~l~GlL~~~~~ 473 (656)
.+++. +|.+...++...+...|+.+..
T Consensus 220 ~~~p~-~~~~~~~s~~~~~~~~l~~~~~ 246 (279)
T 2f1k_A 220 GGNPE-LGTMMATYNQRALLKSLQDYRQ 246 (279)
T ss_dssp GSCHH-HHHHHHHHSHHHHHHHHHHHHH
T ss_pred CCCHH-HHHHHHHHhHHHHHHHHHHHHH
Confidence 77887 8888888887765544544433
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=128.69 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=95.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
++|||||+|.||..+|++|...|++|++||++. ..+.+.+.|+... ++.+++++||+|++|+|..+..+.++....+.
T Consensus 6 ~kIgfIGLG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~~~~~ 85 (297)
T 4gbj_A 6 EKIAFLGLGNLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSMELVE 85 (297)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCHHHHH
T ss_pred CcEEEEecHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHHHHHh
Confidence 589999999999999999999999999999886 3445566787765 89999999999999999777777777777888
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
.++++.++||++....-..+.+.+.+++..+...-.-|++..
T Consensus 86 ~~~~~~iiid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~ 127 (297)
T 4gbj_A 86 KLGKDGVHVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARP 127 (297)
T ss_dssp HHCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCH
T ss_pred hcCCCeEEEECCCCChHHHHHHHHHHHhcCCceecCCcCCCc
Confidence 999999999999999888888888888766633322244443
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.3e-11 Score=125.56 Aligned_cols=115 Identities=9% Similarity=0.100 Sum_probs=92.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.....-++|||||+|.||..+|++|...|++|.+||++. ..+.+.+.|+... ++++++++||+|++|+|....++.++
T Consensus 16 ~~~~~m~~I~iIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~ 95 (310)
T 3doj_A 16 PRGSHMMEVGFLGLGIMGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVV 95 (310)
T ss_dssp --CCCSCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHH
T ss_pred cccccCCEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHH
Confidence 345556899999999999999999999999999999986 3455566788765 89999999999999999655666555
Q ss_pred --cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 302 --NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 302 --~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
....+..++++.+|||+++......+.+.+.+.+..+
T Consensus 96 ~~~~~l~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 134 (310)
T 3doj_A 96 FDKGGVLEQICEGKGYIDMSTVDAETSLKINEAITGKGG 134 (310)
T ss_dssp HSTTCGGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hCchhhhhccCCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 2345567899999999999888888888877776544
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=118.78 Aligned_cols=218 Identities=16% Similarity=0.205 Sum_probs=129.0
Q ss_pred CCHhHHHHhhcCC-cEEEec------CCCHhHHHh---------hcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccc
Q 006212 99 LGEAGLAILRSFG-NVECLY------DLSPEALCE---------KISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGV 162 (656)
Q Consensus 99 l~~~~~~~l~~~~-~v~~~~------~~~~eel~~---------~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~ 162 (656)
+.|+....|.+.+ +|.+.. .++.++..+ .+.++|+|+--. +.+.+-++.+.++-.+++..--
T Consensus 43 ltP~~v~~L~~~G~~V~VE~gaG~~~~f~D~~Y~~aGa~i~~~~~~~~adiIlkVk--~p~~~e~~~l~~g~~l~~~lh~ 120 (405)
T 4dio_A 43 GSVESVKKLKSLGFDVVVEAGAGLGSRIPDQEYEKAGARVGTAADAKTADVILKVR--RPSAQEISGYRSGAVVIAIMDP 120 (405)
T ss_dssp CCHHHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEECGGGGGGCSEEEEEE--CCCTTTGGGSCTTCEEEEECCC
T ss_pred CCHHHHHHHHhCCCEEEEeCCCCccCCCCHHHHHHcCCEEchHHhhccCCEEEEeC--CCChhHHhhcCCCcEEEEEecc
Confidence 4566666665543 454432 245555433 133578766321 2233444555556667765544
Q ss_pred ccCccchhhHHhcCceeecCCCCChhhHHHH--HHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecCh
Q 006212 163 GIDNVDLQAATEFGCLVVNAPIANTVAAAEH--GIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGK 239 (656)
Q Consensus 163 GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~--~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~ 239 (656)
.-|.=-++++.++||...---.....+-|.- +++-|-.++-+..-......-++.......+ -.+.+.+|+|+|+|.
T Consensus 121 ~~~~~l~~~l~~~~it~ia~E~i~r~~ra~~l~~ls~~s~iAGy~Av~~aa~~l~~~~~~l~t~~g~v~~~kV~ViG~G~ 200 (405)
T 4dio_A 121 YGNEEAISAMAGAGLTTFAMELMPRITRAQSMDVLSSQANLAGYQAVIDAAYEYDRALPMMMTAAGTVPAAKIFVMGAGV 200 (405)
T ss_dssp TTCHHHHHHHHHTTCEEEEGGGSCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEETTEEECCCEEEEECCSH
T ss_pred ccCHHHHHHHHHCCCeEEEeeccccccccCccceecchhHHHHHHHHHHHHHHhHhhhchhhccCCCcCCCEEEEECCcH
Confidence 3344446888999998853322210000000 1111111111111001111111111111111 147899999999999
Q ss_pred hHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeec------------------------------CHHHHhccCCEEE
Q 006212 240 VGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV------------------------------SFDQALATADFIS 288 (656)
Q Consensus 240 IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~------------------------------~l~ell~~aDvV~ 288 (656)
||..+|+.++++|++|++||++.. .+.+.+.|..++ ++++.+++||+|+
T Consensus 201 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI 280 (405)
T 4dio_A 201 AGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVI 280 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEE
Confidence 999999999999999999999874 355666665431 4678899999999
Q ss_pred Ecc--CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHM--PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~--Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.++ |.. ....+++++.++.||||++|||++
T Consensus 281 ~tvlipg~-~ap~Lvt~emv~~Mk~GsVIVDvA 312 (405)
T 4dio_A 281 TTALIPGR-PAPRLVTREMLDSMKPGSVVVDLA 312 (405)
T ss_dssp ECCCCSSS-CCCCCBCHHHHTTSCTTCEEEETT
T ss_pred ECCcCCCC-CCCEEecHHHHhcCCCCCEEEEEe
Confidence 875 533 467789999999999999999997
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=2.9e-10 Score=121.56 Aligned_cols=109 Identities=24% Similarity=0.336 Sum_probs=92.9
Q ss_pred cc-ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhc-cCCEEEEccCCCcccccc
Q 006212 224 GV-SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 224 g~-~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
|. +|.||||+|+|+|+||+.+|++++++|++|+++|++.. .+.+...|++.+++++++. +||+++.| .+.++
T Consensus 169 G~~~L~GktV~I~G~GnVG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v~~~ell~~~~DIliP~-----A~~~~ 243 (355)
T 1c1d_A 169 GLGSLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPC-----AMGGV 243 (355)
T ss_dssp TCCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEEC-----SCSCC
T ss_pred CCCCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEeChHHhhcCccceecHh-----HHHhh
Confidence 55 79999999999999999999999999999999998753 2345557888888899988 99999753 57889
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
|+.+.++.|| ..+|+|.+++++.++++ .++|+++.|.
T Consensus 244 I~~~~~~~lk-~~iVie~AN~p~t~~eA-~~~L~~~gIl 280 (355)
T 1c1d_A 244 ITTEVARTLD-CSVVAGAANNVIADEAA-SDILHARGIL 280 (355)
T ss_dssp BCHHHHHHCC-CSEECCSCTTCBCSHHH-HHHHHHTTCE
T ss_pred cCHHHHhhCC-CCEEEECCCCCCCCHHH-HHHHHhCCEE
Confidence 9999999998 68999999999998777 4778877664
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-10 Score=123.31 Aligned_cols=137 Identities=16% Similarity=0.116 Sum_probs=95.8
Q ss_pred HHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC--------ChhHHHHcCCeec-CH
Q 006212 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA--------PADKARAVGVELV-SF 277 (656)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~--------~~~~a~~~g~~~~-~l 277 (656)
++.+.+-+.|.++.++.. -.++|||||+|.||..+|++|...| ++|++||++. ..+.+.+.|+ .. ++
T Consensus 5 ~~~~~~~~~~~~~~~~~~--M~m~IgvIG~G~mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~-~~~s~ 81 (317)
T 4ezb_A 5 HHHSSGVDLGTENLYFQS--MMTTIAFIGFGEAAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV-EPLDD 81 (317)
T ss_dssp ----------CCCHHHHT--SCCEEEEECCSHHHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC-EEESS
T ss_pred cccccccccCcccCcccc--cCCeEEEECccHHHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC-CCCCH
Confidence 444555667777654322 2378999999999999999999999 9999999874 1123345577 66 89
Q ss_pred HHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 278 DQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 278 ~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
++++++||+|++|+|....... + .+....++++.+|||+++......+.+.+.+++..+....--|++.+
T Consensus 82 ~e~~~~aDvVi~avp~~~~~~~-~-~~i~~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~~ 151 (317)
T 4ezb_A 82 VAGIACADVVLSLVVGAATKAV-A-ASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARV 151 (317)
T ss_dssp GGGGGGCSEEEECCCGGGHHHH-H-HHHGGGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSCS
T ss_pred HHHHhcCCEEEEecCCHHHHHH-H-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCCc
Confidence 9999999999999996554433 3 55667799999999999988888888888887754433222466644
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-11 Score=131.34 Aligned_cols=137 Identities=23% Similarity=0.298 Sum_probs=99.9
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
..+.+++|||||+|.||+++|+.|+..|++|+++|+... .+.+.+.|+...++++++++||+|++|+|... ...++.
T Consensus 12 ~~l~~~~I~IIG~G~mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~~~~e~~~~aDvVilavp~~~-~~~v~~ 90 (338)
T 1np3_A 12 SIIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTPDEF-QGRLYK 90 (338)
T ss_dssp HHHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSCHHH-HHHHHH
T ss_pred chhcCCEEEEECchHHHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEccHHHHHhcCCEEEEeCCcHH-HHHHHH
Confidence 467899999999999999999999999999999998764 35566778876689999999999999999443 355554
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCC---Ccccc---CCcEEEcCCCCC
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD---SKLVQ---HENVTVTPHLGA 371 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~---~~L~~---~~nvilTPH~g~ 371 (656)
++....|+++++|++++ + +.. ....+. .+.+.|++..+|..+. ..|++ ..++++|||.+.
T Consensus 91 ~~i~~~l~~~~ivi~~~--g-v~~--~~~~~~----~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~ 156 (338)
T 1np3_A 91 EEIEPNLKKGATLAFAH--G-FSI--HYNQVV----PRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDA 156 (338)
T ss_dssp HHTGGGCCTTCEEEESC--C-HHH--HTTSSC----CCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECS
T ss_pred HHHHhhCCCCCEEEEcC--C-chh--HHHhhc----CCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCC
Confidence 34556799999999984 2 232 222222 1233456666664333 24666 788999999643
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.2e-10 Score=122.51 Aligned_cols=140 Identities=14% Similarity=0.132 Sum_probs=91.9
Q ss_pred HHHHHcccccccccc--ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC---ChhHHHHcCCeec-CHHHHh
Q 006212 209 DASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA---PADKARAVGVELV-SFDQAL 281 (656)
Q Consensus 209 ~~~~~~g~W~~~~~~--g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~---~~~~a~~~g~~~~-~l~ell 281 (656)
++.++++.|.+.... ......++|||||+|.||..+|++|...|+ +|.+||++. ..+.+.+.|+... ++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~I~iIG~G~mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~ 81 (312)
T 3qsg_A 2 HHHHHHSSGVDLGTENLYFQSNAMKLGFIGFGEAASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVA 81 (312)
T ss_dssp -----------------------CEEEEECCSHHHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHH
T ss_pred CcccccccccccCcccccccCCCCEEEEECccHHHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHH
Confidence 345667777653221 123345799999999999999999999999 999999962 3345566788765 899999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEEEEeeccCCCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDVFTEEP 350 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g--~i~gA~lDV~~~EP 350 (656)
++||+|++|+|...... .+ .+....++++.+|||+++.......++.+.+.+. .+.....-|++.+|
T Consensus 82 ~~aDvVi~~vp~~~~~~-~~-~~l~~~l~~~~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~ 150 (312)
T 3qsg_A 82 GECDVIFSLVTAQAALE-VA-QQAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVK 150 (312)
T ss_dssp HHCSEEEECSCTTTHHH-HH-HHHGGGCCTTCEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCST
T ss_pred hcCCEEEEecCchhHHH-HH-HhhHhhcCCCCEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCch
Confidence 99999999999654333 33 5566779999999999998888888887777654 23222223566443
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-11 Score=125.75 Aligned_cols=176 Identities=16% Similarity=0.153 Sum_probs=123.6
Q ss_pred CCCHhHHHhhcCC----CeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHHH
Q 006212 118 DLSPEALCEKISQ----CDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEH 193 (656)
Q Consensus 118 ~~~~eel~~~i~~----~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE~ 193 (656)
+.+++++.+.+.+ ++++.+. .++.+++++.+ ++|.-+++...|+|.++. +.| +.+|+|++.
T Consensus 37 ~~~~~~l~~~i~~l~~~~~G~~vt--~P~k~~i~~~~-~~l~~~a~~~gavn~i~~----~~g----~~~g~ntd~---- 101 (263)
T 2d5c_A 37 DTPLEALPGRLKEVRRAFRGVNLT--LPLKEAALAHL-DWVSPEAQRIGAVNTVLQ----VEG----RLFGFNTDA---- 101 (263)
T ss_dssp ECCGGGHHHHHHHHHHHCSEEEEC--TTCTTGGGGGC-SEECHHHHHHTCCCEEEE----ETT----EEEEECCHH----
T ss_pred eCCHHHHHHHHHhccccCceEEEc--ccCHHHHHHHH-HHHhHHHHHhCCCCcEEc----cCC----eEEEeCCCH----
Confidence 4566666665543 4555553 46778888877 588888999999999976 344 334667654
Q ss_pred HHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC--hhHHHHcC
Q 006212 194 GIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP--ADKARAVG 271 (656)
Q Consensus 194 ~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g 271 (656)
.+++.++.| .+.++.| +++|||+|.||+.+|+.|...|++|.++|++.. ...+...|
T Consensus 102 -~g~~~~l~~-------------------~~~~l~~-~v~iiG~G~~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~ 160 (263)
T 2d5c_A 102 -PGFLEALKA-------------------GGIPLKG-PALVLGAGGAGRAVAFALREAGLEVWVWNRTPQRALALAEEFG 160 (263)
T ss_dssp -HHHHHHHHH-------------------TTCCCCS-CEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHT
T ss_pred -HHHHHHHHH-------------------hCCCCCC-eEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhc
Confidence 244444432 1457889 999999999999999999999999999998752 22333446
Q ss_pred CeecCHHHHhccCCEEEEccCCCc--cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 272 VELVSFDQALATADFISLHMPLNP--TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 272 ~~~~~l~ell~~aDvV~l~~Plt~--~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
..+.+++++ +++|+|++|+|... ++...+. ...+++|.+++|++.+.. +. .+.++.++
T Consensus 161 ~~~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~---~~~l~~g~~viD~~~~p~-~t-~l~~~a~~ 220 (263)
T 2d5c_A 161 LRAVPLEKA-REARLLVNATRVGLEDPSASPLP---AELFPEEGAAVDLVYRPL-WT-RFLREAKA 220 (263)
T ss_dssp CEECCGGGG-GGCSEEEECSSTTTTCTTCCSSC---GGGSCSSSEEEESCCSSS-SC-HHHHHHHH
T ss_pred cchhhHhhc-cCCCEEEEccCCCCCCCCCCCCC---HHHcCCCCEEEEeecCCc-cc-HHHHHHHH
Confidence 555578888 99999999999762 2334443 456899999999998643 33 35554444
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-11 Score=122.79 Aligned_cols=108 Identities=20% Similarity=0.221 Sum_probs=91.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.++|||||+|.||..+|++|...|++|.+||++. ..+.+.+.|+... +++++++ ||+|++|+|....++.++ ...+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~-~~l~ 92 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVV-GELA 92 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHH-HHHH
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHH-HHHH
Confidence 3689999999999999999999999999999986 4456667788765 8999999 999999999666666666 5667
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..++++.++||+++......+.+.+.+.+..+
T Consensus 93 ~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 124 (296)
T 3qha_A 93 GHAKPGTVIAIHSTISDTTAVELARDLKARDI 124 (296)
T ss_dssp TTCCTTCEEEECSCCCHHHHHHHHHHHGGGTC
T ss_pred HhcCCCCEEEEeCCCCHHHHHHHHHHHHHcCC
Confidence 77999999999999998888888888876544
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.3e-10 Score=124.72 Aligned_cols=121 Identities=11% Similarity=0.190 Sum_probs=98.5
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccC---CEEEEccCCCccccccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATA---DFISLHMPLNPTTSKIF 301 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~a---DvV~l~~Plt~~T~~li 301 (656)
+.+++|||||+|.||..+|++|...|++|.+||++. ..+.+.+.|+... +++++++++ |+|++|+|.. .+..++
T Consensus 20 m~~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl 98 (358)
T 4e21_A 20 FQSMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSML 98 (358)
T ss_dssp --CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHH
T ss_pred hcCCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHH
Confidence 567899999999999999999999999999999985 3344555677654 899999999 9999999966 666666
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
...+..+++|.+|||++++...+...+.+.+++..+......|++.+
T Consensus 99 -~~l~~~l~~g~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~ 145 (358)
T 4e21_A 99 -QRMTPLLAANDIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGI 145 (358)
T ss_dssp -HHHGGGCCTTCEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGG
T ss_pred -HHHHhhCCCCCEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCH
Confidence 55677799999999999999888888888888776655555676655
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-10 Score=120.74 Aligned_cols=109 Identities=13% Similarity=0.160 Sum_probs=90.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||..+|++|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|....++.++. ...
T Consensus 2 ~~i~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l 81 (287)
T 3pef_A 2 QKFGFIGLGIMGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGV 81 (287)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchH
Confidence 689999999999999999999999999999986 4455666787665 899999999999999996556666551 445
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..++++.++||+++....+.+.+.+.+++..+
T Consensus 82 ~~~l~~~~~vi~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pef_A 82 LEGIGEGRGYVDMSTVDPATSQRIGVAVVAKGG 114 (287)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcCCCCCEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence 567999999999999888888888887776544
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=9.2e-10 Score=113.95 Aligned_cols=130 Identities=18% Similarity=0.129 Sum_probs=94.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-----------C--------------Cee-cCHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-----------G--------------VEL-VSFDQALA 282 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-----------g--------------~~~-~~l~ell~ 282 (656)
++|+|||.|.||..+|+.+...|++|++||++.. .+.+.+. | +.. .++++.++
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~ 84 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVK 84 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTT
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhc
Confidence 6899999999999999999999999999998752 2222221 1 222 47889999
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG-VVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+.|+|.+.+....+-.+....++++++|++.+++- ...++.+++... ++ .+++.+. |.+..+
T Consensus 85 ~aDlVi~av~~~~~~~~~v~~~l~~~~~~~~il~s~tS~~--~~~~la~~~~~~~~~--ig~h~~~--------p~~~~~ 152 (283)
T 4e12_A 85 DADLVIEAVPESLDLKRDIYTKLGELAPAKTIFATNSSTL--LPSDLVGYTGRGDKF--LALHFAN--------HVWVNN 152 (283)
T ss_dssp TCSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHHHHSCGGGE--EEEEECS--------STTTSC
T ss_pred cCCEEEEeccCcHHHHHHHHHHHHhhCCCCcEEEECCCCC--CHHHHHhhcCCCcce--EEEccCC--------CcccCc
Confidence 9999999999776666655566677799999999665553 445666666542 34 4555542 344567
Q ss_pred cEEEcCCCCC
Q 006212 362 NVTVTPHLGA 371 (656)
Q Consensus 362 nvilTPH~g~ 371 (656)
.+.++||...
T Consensus 153 lvevv~~~~t 162 (283)
T 4e12_A 153 TAEVMGTTKT 162 (283)
T ss_dssp EEEEEECTTS
T ss_pred eEEEEeCCCC
Confidence 7889998533
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.3e-10 Score=120.28 Aligned_cols=109 Identities=14% Similarity=0.156 Sum_probs=89.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||..+|++|...|++|.+||++. ..+...+.|+... ++++++++||+|++|+|..+.++.++. ...
T Consensus 2 ~~I~iiG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l 81 (287)
T 3pdu_A 2 TTYGFLGLGIMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGV 81 (287)
T ss_dssp CCEEEECCSTTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhh
Confidence 479999999999999999999999999999986 3455566687665 899999999999999996556665551 345
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..++++.++||++++.....+.+.+.+.+..+
T Consensus 82 ~~~l~~g~~vv~~st~~~~~~~~~~~~~~~~g~ 114 (287)
T 3pdu_A 82 LEGIGGGRGYIDMSTVDDETSTAIGAAVTARGG 114 (287)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred hhcccCCCEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 567899999999999988888888877776544
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.9e-10 Score=123.34 Aligned_cols=152 Identities=20% Similarity=0.253 Sum_probs=110.1
Q ss_pred cceeEE-ecccccCccc-hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCC
Q 006212 153 KLKVVG-RAGVGIDNVD-LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGK 230 (656)
Q Consensus 153 ~LK~I~-~~g~GvD~iD-~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gk 230 (656)
+++-++ -..+|+..+. +.+..+..|+|+|+.+..+...-+...+ .. +.+..+-|. ..+..+.||
T Consensus 201 ~i~G~~EeTttGv~rL~~~~~~g~L~iPvinvnDs~tK~~fDn~yG----t~-------~sl~dgi~r---~tg~~L~GK 266 (488)
T 3ond_A 201 RVVGVSEETTTGVKRLYQMQANGTLLFPAINVNDSVTKSKFDNLYG----CR-------HSLPDGLMR---ATDVMIAGK 266 (488)
T ss_dssp HCCEEEECSHHHHHHHHHHHHTTCCCSCEEECTTSHHHHTTHHHHH----HH-------HHHHHHHHH---HHCCCCTTC
T ss_pred hcceeEecccccHHHHHHHHHcCCCCCceecccchhhhhHhhhhcc----cc-------HHHHHHHHH---HcCCcccCC
Confidence 344443 3577887753 2334467799999976544432221111 11 112222221 245679999
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+++|+|+|.||+.+|++|+++|++|+++|++. ....+...|+...++++++..+|+|+.+. .+.++++.+.+..|
T Consensus 267 tVvVtGaGgIG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv~~lee~~~~aDvVi~at----G~~~vl~~e~l~~m 342 (488)
T 3ond_A 267 VAVVAGYGDVGKGCAAALKQAGARVIVTEIDPICALQATMEGLQVLTLEDVVSEADIFVTTT----GNKDIIMLDHMKKM 342 (488)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGTTTTCSEEEECS----SCSCSBCHHHHTTS
T ss_pred EEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCccCCHHHHHHhcCEEEeCC----CChhhhhHHHHHhc
Confidence 99999999999999999999999999999875 33456667888889999999999999764 36778899999999
Q ss_pred CCCcEEEEcCCCc
Q 006212 310 KKGVRIVNVARGG 322 (656)
Q Consensus 310 K~gailINvaRg~ 322 (656)
|++++|+|+|++.
T Consensus 343 k~gaiVvNaG~~~ 355 (488)
T 3ond_A 343 KNNAIVCNIGHFD 355 (488)
T ss_dssp CTTEEEEESSSTT
T ss_pred CCCeEEEEcCCCC
Confidence 9999999999973
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.06 E-value=1.5e-10 Score=120.83 Aligned_cols=110 Identities=16% Similarity=0.176 Sum_probs=89.4
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee--cCHHHHhccCCEEEEccCCCcccccccc--H
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL--VSFDQALATADFISLHMPLNPTTSKIFN--D 303 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~--~~l~ell~~aDvV~l~~Plt~~T~~li~--~ 303 (656)
.++|||||+|.||..+|++|...|++|.+||++. ..+...+.|... .++++++++||+|++|+|....++.++. +
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~ 86 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGED 86 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--C
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChh
Confidence 4689999999999999999999999999999886 334555667754 4899999999999999996555555542 3
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+..++++.++||+++......+.+.+.+.+..+
T Consensus 87 ~l~~~l~~g~ivv~~st~~~~~~~~~~~~~~~~g~ 121 (303)
T 3g0o_A 87 GVAHLMKPGSAVMVSSTISSADAQEIAAALTALNL 121 (303)
T ss_dssp CCGGGSCTTCEEEECSCCCHHHHHHHHHHHHTTTC
T ss_pred hHHhhCCCCCEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 44567899999999999988888888887776544
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=99.00 E-value=3.5e-10 Score=116.83 Aligned_cols=165 Identities=18% Similarity=0.221 Sum_probs=117.4
Q ss_pred CCCHhHHHhhcC-----CCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecCCCCChhhHHH
Q 006212 118 DLSPEALCEKIS-----QCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAE 192 (656)
Q Consensus 118 ~~~~eel~~~i~-----~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~p~~n~~~vAE 192 (656)
+.+++++.+.+. +++++.+. .+..+++++.+ +.+.-.++...++|.++. +.|- ..|+|++..
T Consensus 48 ~~~~~~l~~~i~~l~~~~~~G~nvt--iP~k~~i~~~l-d~l~~~A~~~gavnti~~----~~g~----~~g~nTd~~-- 114 (275)
T 2hk9_A 48 EINPEELKKAFEGFKALKVKGINVT--VPFKEEIIPLL-DYVEDTAKEIGAVNTVKF----ENGK----AYGYNTDWI-- 114 (275)
T ss_dssp ECCGGGHHHHHHHHHHHTCCEEEEC--TTSTTTTGGGC-SEECHHHHHHTCCCEEEE----ETTE----EEEECCHHH--
T ss_pred ECCHHHHHHHHHHHHhCCCCEEEEC--ccCHHHHHHHH-HHhhHHHHHhCCcceEEe----eCCE----EEeecCCHH--
Confidence 456666655442 57788875 46777788776 478888888888998865 3452 235666443
Q ss_pred HHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHc
Q 006212 193 HGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAV 270 (656)
Q Consensus 193 ~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~ 270 (656)
+++.++.| .+.++.|++++|||.|.+|+++|+.|...|++|.++|++... ..+...
T Consensus 115 ---G~~~~l~~-------------------~~~~~~~~~v~iiGaG~~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~ 172 (275)
T 2hk9_A 115 ---GFLKSLKS-------------------LIPEVKEKSILVLGAGGASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKF 172 (275)
T ss_dssp ---HHHHHHHH-------------------HCTTGGGSEEEEECCSHHHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTS
T ss_pred ---HHHHHHHH-------------------hCCCcCCCEEEEECchHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHc
Confidence 44444432 134678999999999999999999999889999999987521 122233
Q ss_pred CCeec-CHHHHhccCCEEEEccCCCc--cccccccHHHHhcCCCCcEEEEcCC
Q 006212 271 GVELV-SFDQALATADFISLHMPLNP--TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 271 g~~~~-~l~ell~~aDvV~l~~Plt~--~T~~li~~~~l~~mK~gailINvaR 320 (656)
|+... +++++++++|+|++|+|... ++...+. +..++++.+++|++.
T Consensus 173 g~~~~~~~~~~~~~aDiVi~atp~~~~~~~~~~i~---~~~l~~g~~viDv~~ 222 (275)
T 2hk9_A 173 PLEVVNSPEEVIDKVQVIVNTTSVGLKDEDPEIFN---YDLIKKDHVVVDIIY 222 (275)
T ss_dssp CEEECSCGGGTGGGCSEEEECSSTTSSTTCCCSSC---GGGCCTTSEEEESSS
T ss_pred CCeeehhHHhhhcCCCEEEEeCCCCCCCCCCCCCC---HHHcCCCCEEEEcCC
Confidence 55544 78888999999999999664 2223443 455899999999987
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=98.89 E-value=1.1e-09 Score=120.45 Aligned_cols=104 Identities=20% Similarity=0.310 Sum_probs=80.2
Q ss_pred ccccccccccccccCC-CEEEEEecChhHHHHHHHHhcC------CCEEEEECCC-C-ChhHHHHcCCee-----cCHHH
Q 006212 214 AGKWLRSKYVGVSLVG-KTLAVMGFGKVGSEVARRAKGL------GMNVIAHDPY-A-PADKARAVGVEL-----VSFDQ 279 (656)
Q Consensus 214 ~g~W~~~~~~g~~l~g-ktvGIIGlG~IG~~vA~~lk~~------G~~Vi~~d~~-~-~~~~a~~~g~~~-----~~l~e 279 (656)
.|+|... .....|.| |+|||||+|+||+++|+.|+.. |++|++.++. . ..+.+.+.|+.. .++++
T Consensus 39 ~~~w~~~-~~~~~L~GiKkIgIIGlGsMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aE 117 (525)
T 3fr7_A 39 GGRNLFP-LLPEAFKGIKQIGVIGWGSQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWE 117 (525)
T ss_dssp CCGGGGG-GHHHHTTTCSEEEEECCTTHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHH
T ss_pred ccccccc-cChHHhcCCCEEEEEeEhHHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHH
Confidence 3455532 12457999 9999999999999999999987 9998865443 3 566778889864 58999
Q ss_pred HhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 280 ALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 280 ll~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
++++||+|++++|.... ..++. +.+..||+|++|+ .+.|
T Consensus 118 Aa~~ADVVILaVP~~~~-~eVl~-eI~p~LK~GaILs-~AaG 156 (525)
T 3fr7_A 118 TVSGSDLVLLLISDAAQ-ADNYE-KIFSHMKPNSILG-LSHG 156 (525)
T ss_dssp HHHHCSEEEECSCHHHH-HHHHH-HHHHHSCTTCEEE-ESSS
T ss_pred HHhcCCEEEECCChHHH-HHHHH-HHHHhcCCCCeEE-EeCC
Confidence 99999999999996554 34665 6788899999964 4455
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=98.89 E-value=2.6e-09 Score=118.81 Aligned_cols=120 Identities=16% Similarity=0.191 Sum_probs=94.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---CCe---ecCHHHHhc---cCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---GVE---LVSFDQALA---TADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---g~~---~~~l~ell~---~aDvV~l~~Plt~~T~ 298 (656)
.++|||||+|.||..+|++|...|++|.+||++.. .+.+.+. +.. ..+++++++ ++|+|++++|..+.+.
T Consensus 4 ~~kIgiIGlG~MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 83 (484)
T 4gwg_A 4 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVD 83 (484)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHH
T ss_pred CCEEEEEChhHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHH
Confidence 35799999999999999999999999999999863 3333333 222 248888887 5999999999766677
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
.++ .+....|++|.+|||++++...+...+.+.+.+..+.....-|++.+
T Consensus 84 ~vl-~~l~~~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~ 133 (484)
T 4gwg_A 84 DFI-EKLVPLLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGE 133 (484)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHH
T ss_pred HHH-HHHHHhcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCH
Confidence 766 56677899999999999999888888888887765544444566655
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.89 E-value=1.9e-09 Score=111.67 Aligned_cols=107 Identities=15% Similarity=0.279 Sum_probs=85.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|+|||+|.||+.+|+.|...|++|.+||++. ..+...+.|+... +++++++++|+|++|+|....+..++. ++.
T Consensus 6 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l 85 (299)
T 1vpd_A 6 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 85 (299)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred ceEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchH
Confidence 489999999999999999999999999999875 2344455577654 799999999999999996555555552 234
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
...++++++|||++.+...+.+.+.+.+...
T Consensus 86 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 116 (299)
T 1vpd_A 86 IEGAKPGTVLIDMSSIAPLASREISDALKAK 116 (299)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4668999999999998877778888877764
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.4e-09 Score=110.32 Aligned_cols=101 Identities=20% Similarity=0.241 Sum_probs=66.3
Q ss_pred ccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh---------------hH-HHHcC-CeecCHH
Q 006212 216 KWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA---------------DK-ARAVG-VELVSFD 278 (656)
Q Consensus 216 ~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~---------------~~-a~~~g-~~~~~l~ 278 (656)
+|....+...++.+++|||||+|.||+.+|++|...|++|++||++... .. +...+ ....++.
T Consensus 6 ~~~~~~~~~~~~~~~kIgiIG~G~mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (245)
T 3dtt_A 6 IHHHHHHENLYFQGMKIAVLGTGTVGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFA 85 (245)
T ss_dssp -------------CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHH
T ss_pred ccccccccccccCCCeEEEECCCHHHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHH
Confidence 3444445678999999999999999999999999999999999987532 11 11223 3445899
Q ss_pred HHhccCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcC
Q 006212 279 QALATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVA 319 (656)
Q Consensus 279 ell~~aDvV~l~~Plt~~T~~li~~~~-l~~mK~gailINva 319 (656)
+++++||+|++|+|... ....+. +. ...+ ++.+|||++
T Consensus 86 e~~~~aDvVilavp~~~-~~~~~~-~i~~~~l-~g~ivi~~s 124 (245)
T 3dtt_A 86 DVAAGAELVVNATEGAS-SIAALT-AAGAENL-AGKILVDIA 124 (245)
T ss_dssp HHHHHCSEEEECSCGGG-HHHHHH-HHCHHHH-TTSEEEECC
T ss_pred HHHhcCCEEEEccCcHH-HHHHHH-Hhhhhhc-CCCEEEECC
Confidence 99999999999999543 233332 11 2234 899999999
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-09 Score=117.47 Aligned_cols=112 Identities=15% Similarity=0.144 Sum_probs=88.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc----CCeec-CHHHHhcc---CCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV----GVELV-SFDQALAT---ADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~----g~~~~-~l~ell~~---aDvV~l~~Plt~~ 296 (656)
.+..++|||||+|.||+.+|++|...|++|.+||++.. .+...+. |+... ++++++++ +|+|++++|..+.
T Consensus 12 ~~~~~~IgvIGlG~MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~ 91 (480)
T 2zyd_A 12 HMSKQQIGVVGMAVMGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAG 91 (480)
T ss_dssp ---CBSEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSH
T ss_pred ccCCCeEEEEccHHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHH
Confidence 45677899999999999999999999999999998752 2333332 66544 89998887 9999999997667
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++.++ ++....+++|.+|||++.|...+...+.+.+.+..+
T Consensus 92 v~~vl-~~l~~~l~~g~iIId~s~g~~~~t~~l~~~l~~~g~ 132 (480)
T 2zyd_A 92 TDAAI-DSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGF 132 (480)
T ss_dssp HHHHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHH-HHHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 77777 455677899999999999988777778777776433
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-09 Score=109.97 Aligned_cols=106 Identities=18% Similarity=0.312 Sum_probs=82.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH--HH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~--~~ 305 (656)
++|||||+|.||+.+|++|...|++|.+||++.. .+...+.|+... +++++++++|+|++|+|....++.++.. ..
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~ 80 (296)
T 2gf2_A 1 MPVGFIGLGNMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGI 80 (296)
T ss_dssp CCEEEECCSTTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSG
T ss_pred CeEEEEeccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhH
Confidence 3699999999999999999999999999999763 344455677654 7999999999999999966566665533 23
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+..++++.++||++...+.+.+.+.+.+.+
T Consensus 81 ~~~l~~~~~vv~~s~~~~~~~~~~~~~~~~ 110 (296)
T 2gf2_A 81 LKKVKKGSLLIDSSTIDPAVSKELAKEVEK 110 (296)
T ss_dssp GGTCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred HhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999887776666666665654
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.4e-09 Score=109.74 Aligned_cols=107 Identities=18% Similarity=0.251 Sum_probs=85.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||+.+|+.|...|++|.+||++.. .+...+.|+... +++++++++|+|++|+|....++.++. .+.
T Consensus 5 ~~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 84 (301)
T 3cky_A 5 IKIGFIGLGAMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGV 84 (301)
T ss_dssp CEEEEECCCTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchH
Confidence 5899999999999999999989999999998752 333444477654 799999999999999996655666653 244
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
...++++.+||++++|...+.+.+.+.+.+.
T Consensus 85 ~~~l~~~~~vv~~~~~~~~~~~~l~~~~~~~ 115 (301)
T 3cky_A 85 LSACKAGTVIVDMSSVSPSSTLKMAKVAAEK 115 (301)
T ss_dssp HHHSCTTCEEEECCCCCHHHHHHHHHHHHHT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 5668999999999988766677787777653
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.2e-08 Score=106.54 Aligned_cols=127 Identities=17% Similarity=0.189 Sum_probs=86.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc-------CCeec-CHHHHhccCCEEEEccCCCccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV-------GVELV-SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~-------g~~~~-~l~ell~~aDvV~l~~Plt~~T 297 (656)
-+.|+|||||+|.||++||+.+. .|++|++||++. ..+.+.+. ++... ++++ +++||+|+.|+|...+.
T Consensus 10 ~~~~~V~vIG~G~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~v 87 (293)
T 1zej_A 10 HHHMKVFVIGAGLMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNT 87 (293)
T ss_dssp --CCEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHH
T ss_pred cCCCeEEEEeeCHHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHH
Confidence 35789999999999999999999 999999999986 33444444 45443 6766 89999999999988766
Q ss_pred cccccHHHHhcCCCCcEEE-EcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIV-NVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHL 369 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailI-NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~ 369 (656)
+..+-.+ +..+ ++++++ |++.-.+ ..+.+.+.. .....|++.|. |.. . .+-+.++|+-
T Consensus 88 k~~l~~~-l~~~-~~~IlasntSti~~---~~~a~~~~~-~~r~~G~Hf~~--Pv~-~-----~~lveiv~g~ 146 (293)
T 1zej_A 88 KVEVLRE-VERL-TNAPLCSNTSVISV---DDIAERLDS-PSRFLGVHWMN--PPH-V-----MPLVEIVISR 146 (293)
T ss_dssp HHHHHHH-HHTT-CCSCEEECCSSSCH---HHHHTTSSC-GGGEEEEEECS--STT-T-----CCEEEEEECT
T ss_pred HHHHHHH-HhcC-CCCEEEEECCCcCH---HHHHHHhhc-ccceEeEEecC--ccc-c-----CCEEEEECCC
Confidence 6554333 5667 998884 8876544 344443432 12235556555 432 2 3455577754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=2.9e-08 Score=109.64 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=106.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccccc----cccccc-CCCEEEEEecChhHHHHHHHHhcCCCEEE
Q 006212 182 APIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSK----YVGVSL-VGKTLAVMGFGKVGSEVARRAKGLGMNVI 256 (656)
Q Consensus 182 ~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~----~~g~~l-~gktvGIIGlG~IG~~vA~~lk~~G~~Vi 256 (656)
..|-|-..|.|.+.+.++. +....++|.... +..... .=++|||||.|.||..||..+...|++|+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~---------a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~ 81 (460)
T 3k6j_A 11 STGENLYFQGSEVRSYLME---------AHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETF 81 (460)
T ss_dssp TTSGGGGGCBCHHHHHHHH---------TTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEE
T ss_pred ccccchhhhhHHHHHHHHh---------HHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEE
Confidence 3455666777777777776 223346787541 211111 22689999999999999999999999999
Q ss_pred EECCCCCh---------hHHHHcCC-------------ee-cCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCc
Q 006212 257 AHDPYAPA---------DKARAVGV-------------EL-VSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGV 313 (656)
Q Consensus 257 ~~d~~~~~---------~~a~~~g~-------------~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga 313 (656)
+||++... +.+.+.|. .. .+++ .+++||+|+.|+|...+.+..+-.+....+++++
T Consensus 82 l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~a 160 (460)
T 3k6j_A 82 LVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMKLKKELFANLENICKSTC 160 (460)
T ss_dssp EECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHHHHHHHHHHHHTTSCTTC
T ss_pred EEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHHHHHHHHHHHHhhCCCCC
Confidence 99987531 11223332 22 3564 6899999999999766555444455666789999
Q ss_pred EEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCC
Q 006212 314 RIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHL 369 (656)
Q Consensus 314 ilINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~ 369 (656)
+|++.+++ +....+.+.+... -...+++.|. |.+ .-+| +.++|+.
T Consensus 161 IlasnTSs--l~i~~ia~~~~~p-~r~iG~Hffn--Pv~-~m~L-----vEIv~g~ 205 (460)
T 3k6j_A 161 IFGTNTSS--LDLNEISSVLRDP-SNLVGIHFFN--PAN-VIRL-----VEIIYGS 205 (460)
T ss_dssp EEEECCSS--SCHHHHHTTSSSG-GGEEEEECCS--STT-TCCE-----EEEECCS
T ss_pred EEEecCCC--hhHHHHHHhccCC-cceEEEEecc--hhh-hCCE-----EEEEeCC
Confidence 99654444 2335565555432 2235667666 432 2344 5566653
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.82 E-value=3.4e-09 Score=109.35 Aligned_cols=106 Identities=19% Similarity=0.250 Sum_probs=84.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccH--HH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND--ET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~--~~ 305 (656)
++|||||+|.||+.+|+.|...|++|.+|| +. ..+...+.|+.. .+++++++++|+|++|+|....+..++.. ..
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l 82 (295)
T 1yb4_A 4 MKLGFIGLGIMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGC 82 (295)
T ss_dssp CEEEECCCSTTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSS
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhH
Confidence 489999999999999999999999999999 65 334444557654 37999999999999999965545555431 33
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
...++++.+||+++.+...+.+.+.+.+.+.
T Consensus 83 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 113 (295)
T 1yb4_A 83 AKTSLQGKTIVDMSSISPIETKRFAQRVNEM 113 (295)
T ss_dssp TTSCCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 4568999999999999877778888877764
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.6e-09 Score=107.93 Aligned_cols=105 Identities=14% Similarity=0.164 Sum_probs=83.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
++|+|||+|.||..+|+.|.. |++|.+||++.. .+...+.|+...+++++++++|+|++|+|....+..++ ++....
T Consensus 2 ~~i~iiG~G~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~D~vi~~v~~~~~~~~v~-~~l~~~ 79 (289)
T 2cvz_A 2 EKVAFIGLGAMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAVPLERVAEARVIFTCLPTTREVYEVA-EALYPY 79 (289)
T ss_dssp CCEEEECCSTTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTT
T ss_pred CeEEEEcccHHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccCHHHHHhCCCEEEEeCCChHHHHHHH-HHHHhh
Confidence 479999999999999999999 999999998763 33344446654457788899999999999554455555 444566
Q ss_pred CCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 309 MKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 309 mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
++++.+++|++.+...+.+.+.+.+.+.
T Consensus 80 l~~~~~vv~~s~~~~~~~~~l~~~~~~~ 107 (289)
T 2cvz_A 80 LREGTYWVDATSGEPEASRRLAERLREK 107 (289)
T ss_dssp CCTTEEEEECSCCCHHHHHHHHHHHHTT
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHc
Confidence 8999999999998877778888877764
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.30 E-value=5e-10 Score=110.62 Aligned_cols=93 Identities=16% Similarity=0.247 Sum_probs=75.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
+.+++|||||+|.||+.+|++|...|++|.+||++...+.....|+...+++++++++|+|++|+|.. .+..++ .+
T Consensus 17 ~~~~~I~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~aDvVilav~~~-~~~~v~---~l 92 (201)
T 2yjz_A 17 EKQGVVCIFGTGDFGKSLGLKMLQCGYSVVFGSRNPQVSSLLPRGAEVLCYSEAASRSDVIVLAVHRE-HYDFLA---EL 92 (201)
Confidence 67889999999999999999999999999999987543333334665557888999999999999954 566665 24
Q ss_pred hcCCCCcEEEEcCCCch
Q 006212 307 AKMKKGVRIVNVARGGV 323 (656)
Q Consensus 307 ~~mK~gailINvaRg~i 323 (656)
..++++.+|||+++|-.
T Consensus 93 ~~~~~~~ivI~~~~G~~ 109 (201)
T 2yjz_A 93 ADSLKGRVLIDVSNNQK 109 (201)
Confidence 55778999999999864
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.3e-08 Score=113.80 Aligned_cols=107 Identities=14% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----cCCeec-CHHHHhcc---CCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----VGVELV-SFDQALAT---ADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----~g~~~~-~l~ell~~---aDvV~l~~Plt~~T~ 298 (656)
.++|||||+|.||+.+|++|...|++|.+||++.. .+...+ .|+... +++++++. +|+|++++|....++
T Consensus 10 ~~~IgvIGlG~MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~ 89 (497)
T 2p4q_A 10 SADFGLIGLAVMGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVD 89 (497)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHH
T ss_pred CCCEEEEeeHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHH
Confidence 45899999999999999999999999999999863 333443 355543 79998877 999999999666677
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
.++ ++....+++|.+|||++.+...+...+.+.+.+.
T Consensus 90 ~vl-~~l~~~l~~g~iIId~s~~~~~~~~~l~~~l~~~ 126 (497)
T 2p4q_A 90 ALI-NQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKK 126 (497)
T ss_dssp HHH-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHHHHT
T ss_pred HHH-HHHHHhCCCCCEEEECCCCChhHHHHHHHHHHHc
Confidence 777 4566778999999999998887777787777664
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.9e-09 Score=108.08 Aligned_cols=106 Identities=16% Similarity=0.203 Sum_probs=84.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH--HH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND--ET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~--~~ 305 (656)
++|||||+|.||+.+|+.|...|++|.+||++. ..+...+.|+... +++++++++|+|++|+|....++.++.. ..
T Consensus 31 ~~I~iIG~G~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~ 110 (316)
T 2uyy_A 31 KKIGFLGLGLMGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGV 110 (316)
T ss_dssp SCEEEECCSHHHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCG
T ss_pred CeEEEEcccHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhH
Confidence 679999999999999999999999999999875 3344555677654 7889999999999999965555554432 13
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+..++++.+|||++++.....+.+.+.+..
T Consensus 111 ~~~l~~~~~vv~~s~~~~~~~~~l~~~~~~ 140 (316)
T 2uyy_A 111 LQGIRPGKCYVDMSTVDADTVTELAQVIVS 140 (316)
T ss_dssp GGGCCTTCEEEECSCCCHHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEECCCCCHHHHHHHHHHHHH
Confidence 456899999999998877667777777754
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.1e-08 Score=104.06 Aligned_cols=102 Identities=15% Similarity=0.225 Sum_probs=79.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC---hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP---ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~---~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
++|||||+|.||+.+|++|...|++|++||+... .+...+.|+. .++++++++||+|++|+|.......+ .+..
T Consensus 1 M~I~iIG~G~mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~aDvvi~~v~~~~~~~~~--~~~~ 77 (264)
T 1i36_A 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT-ETSEEDVYSCPVVISAVTPGVALGAA--RRAG 77 (264)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE-ECCHHHHHTSSEEEECSCGGGHHHHH--HHHH
T ss_pred CeEEEEechHHHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc-CCHHHHHhcCCEEEEECCCHHHHHHH--HHHH
Confidence 3799999999999999999999999999988422 2333445776 77889999999999999965444443 3455
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
..+++ ++||++.+...+.+.+.+.+...
T Consensus 78 ~~~~~--~vi~~s~~~~~~~~~l~~~~~~~ 105 (264)
T 1i36_A 78 RHVRG--IYVDINNISPETVRMASSLIEKG 105 (264)
T ss_dssp TTCCS--EEEECSCCCHHHHHHHHHHCSSS
T ss_pred HhcCc--EEEEccCCCHHHHHHHHHHHhhC
Confidence 56776 99999888777777787777653
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=98.71 E-value=2.5e-08 Score=110.81 Aligned_cols=117 Identities=11% Similarity=0.137 Sum_probs=88.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc----CCee-cCHHHHhcc---CCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV----GVEL-VSFDQALAT---ADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~----g~~~-~~l~ell~~---aDvV~l~~Plt~~T~~l 300 (656)
++|||||+|.||+.+|+++...|++|.+||++.. .+...+. |+.. .+++++++. +|+|++|+|....+..+
T Consensus 6 ~~IgvIG~G~mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~v 85 (474)
T 2iz1_A 6 ANFGVVGMAVMGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDAT 85 (474)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHH
T ss_pred CcEEEEeeHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHH
Confidence 5799999999999999999999999999998752 2333332 5554 379998876 99999999966566666
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccC
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~ 347 (656)
+ ++....+++|.+|||++.+...+...+.+.+.+..+.....-+++
T Consensus 86 l-~~l~~~l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g 131 (474)
T 2iz1_A 86 I-KSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSG 131 (474)
T ss_dssp H-HHHGGGCCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECS
T ss_pred H-HHHHhhCCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCC
Confidence 6 345567899999999999987777788777776434333334443
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.8e-08 Score=110.69 Aligned_cols=118 Identities=15% Similarity=0.148 Sum_probs=88.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----cCCee-cCHHHHhc---cCCEEEEccCCCccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----VGVEL-VSFDQALA---TADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----~g~~~-~~l~ell~---~aDvV~l~~Plt~~T~~ 299 (656)
++|||||+|.||+.+|++|...|++|.+||++.. .+...+ .|+.. .+++++++ ++|+|++|+|....+..
T Consensus 3 m~IgvIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~ 82 (482)
T 2pgd_A 3 ADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDN 82 (482)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHH
T ss_pred CeEEEEChHHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHH
Confidence 4799999999999999999999999999999763 333444 45654 37888874 89999999996656676
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~ 348 (656)
++. +....+++|.+|||++.|...+...+.+.+.+..+...+.-+++.
T Consensus 83 vl~-~l~~~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~ 130 (482)
T 2pgd_A 83 FIE-KLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGG 130 (482)
T ss_dssp HHH-HHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESH
T ss_pred HHH-HHHhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCC
Confidence 663 455678999999999998877777777777654333233344443
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-08 Score=105.40 Aligned_cols=106 Identities=21% Similarity=0.283 Sum_probs=84.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCeecCHHHHhc-cCCEEEEccCCCcccccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~li~ 302 (656)
+|.||||+|+|+|+||+.+|++|.++|++|+++|++... +.+.+.|...++.++++. +||+++.|. +.++++
T Consensus 170 ~L~GktV~V~G~G~VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v~~~~ll~~~~DIvip~a-----~~~~I~ 244 (364)
T 1leh_A 170 SLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAVLN 244 (364)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCCBS
T ss_pred CCCcCEEEEECchHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEChHHHhccCCcEeeccc-----hHHHhC
Confidence 799999999999999999999999999999999987521 233445777778888877 999999874 566788
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+.++.|+ ..+|++.+++.+.++++ .+.|+++.+
T Consensus 245 ~~~~~~lg-~~iV~e~An~p~t~~ea-~~~L~~~Gi 278 (364)
T 1leh_A 245 DFTIPQLK-AKVIAGSADNQLKDPRH-GKYLHELGI 278 (364)
T ss_dssp TTHHHHCC-CSEECCSCSCCBSSHHH-HHHHHHHTC
T ss_pred HHHHHhCC-CcEEEeCCCCCcccHHH-HHHHHhCCC
Confidence 88888884 56889999999877553 345665444
|
| >2iaf_A Hypothetical protein SDHL; MCSG, PSI2, MAD, structural genomics, L-serine dehydratase, structure initiative; 2.05A {Legionella pneumophila} SCOP: d.81.2.1 PDB: 2iqq_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.5e-08 Score=95.49 Aligned_cols=110 Identities=9% Similarity=-0.055 Sum_probs=77.9
Q ss_pred HHHHHhHHHHHhhcCC---CCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhcccc----------ccch--HhH
Q 006212 420 LAKKLGRLAVQLVSGG---SGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFIN----------LVNA--DFT 484 (656)
Q Consensus 420 laerlG~l~~qL~~g~---~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn----------~vNA--~~i 484 (656)
-+.|+|+++++++... ..+++|++.++||++ .++++|++|+|++.||++ +..++++ +.++ +.+
T Consensus 12 Gpmraa~~f~~~l~~~~~l~~~~~v~v~LyGSla-~TgkGHgTD~Aii~GL~G-~~pd~~~~~~~~~~~~~i~~~~~l~l 89 (151)
T 2iaf_A 12 GPMLAANAFLQLLEQKNLFDKTQRVKVELYGSLA-LTGKGHGTDKAILNGLEN-KAPETVDPASMIPRMHEILDSNLLNL 89 (151)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTTT-CCCC-----CHHHHHHHHHHHTEEEE
T ss_pred HHHHHHHHHHHHHhhccccCCCcEEEEEEEchHH-hhCCCccccHHHHhhhcC-CCCCccChhhhHHHHHHHHhcCcccc
Confidence 3468888888888521 158999999999999 999999999999999994 4445565 4444 446
Q ss_pred hhccCceEE------EEEeecCCCCCCCCceEEEEEEecccccceecCCCcE-EEEEEEEEC-CeeE
Q 006212 485 AKQKGLRIS------EERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIPH 543 (656)
Q Consensus 485 Ake~GI~v~------~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~r 543 (656)
|++++|.+. |..... ...|||++++++.+ .++.. .++.+.|+| |.++
T Consensus 90 a~~~~i~f~~~~di~f~~~~~---lp~HpN~m~~~a~~---------~~g~~l~~~~~ySIGGGfI~ 144 (151)
T 2iaf_A 90 AGKKEIPFHEATDFLFLQKEL---LPKHSNGMRFSAFD---------GNANLLIEQVYYSIGGGFIT 144 (151)
T ss_dssp TTTEEEECCHHHHEEEETTCC---CSSCSSEEEEEEEC---------TTSCEEEEEEEEECSSSCEE
T ss_pred CCcceeEEccccceeEcCCCC---CCCCCCeeEEEEEe---------CCCCEEEEEEEEEeCCceEE
Confidence 888887764 322211 12699999999983 34443 589999998 5553
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=98.66 E-value=4.8e-07 Score=96.94 Aligned_cols=180 Identities=14% Similarity=0.157 Sum_probs=114.1
Q ss_pred CCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCceeecC---CCCC-----hhhHHHHH--HHHHH
Q 006212 130 QCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNA---PIAN-----TVAAAEHG--IALLA 199 (656)
Q Consensus 130 ~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~V~n~---p~~n-----~~~vAE~~--lal~L 199 (656)
++|+|+- ...+...+. ....+++.++......++.-.++++.++|+...|. |.-. -.++++.+ ++.++
T Consensus 66 ~ad~i~~-vksP~~~~~-~~~~~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~ 143 (361)
T 1pjc_A 66 SREMVVK-VKEPLPAEY-DLMQKDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQF 143 (361)
T ss_dssp TSSEEEC-SSCCCGGGG-GGCCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHH
T ss_pred cCCeEEE-ECCCCHHHH-HhhcCCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHH
Confidence 6898663 333443332 22234666666655666665678888999888753 4321 12344333 34444
Q ss_pred HHHhchhHHHHHHHccc--cccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee--
Q 006212 200 SMARNVSQADASIKAGK--WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-- 274 (656)
Q Consensus 200 ~~~R~i~~~~~~~~~g~--W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-- 274 (656)
++. |+... ..|+ +-. .. ..+.++++.|+|.|.+|+.+++.++.+|++|+++|++. ..+.+.+.+...
T Consensus 144 gA~-nt~~~----~~g~G~~l~-~l--~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~ 215 (361)
T 1pjc_A 144 GAR-FLERQ----QGGRGVLLG-GV--PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVE 215 (361)
T ss_dssp HHH-HTSGG----GTSCCCCTT-CB--TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSE
T ss_pred HHH-HHhhc----cCCCceecc-CC--CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeE
Confidence 432 22111 1221 101 01 24778999999999999999999999999999999875 233343333211
Q ss_pred ------cCHHHHhccCCEEEEccCCCc-cccccccHHHHhcCCCCcEEEEcC
Q 006212 275 ------VSFDQALATADFISLHMPLNP-TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 275 ------~~l~ell~~aDvV~l~~Plt~-~T~~li~~~~l~~mK~gailINva 319 (656)
.++.+.+..+|+|+.|++... .+..++.+..++.||++.+++|++
T Consensus 216 ~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~ 267 (361)
T 1pjc_A 216 LLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVA 267 (361)
T ss_dssp EEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETT
T ss_pred eeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEe
Confidence 145667789999999997533 234556788899999999999997
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.63 E-value=4.2e-08 Score=109.13 Aligned_cols=117 Identities=13% Similarity=0.188 Sum_probs=87.2
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-HcC-------Cee-cCHHHHhcc---CCEEEEccCCCccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVG-------VEL-VSFDQALAT---ADFISLHMPLNPTT 297 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-~~g-------~~~-~~l~ell~~---aDvV~l~~Plt~~T 297 (656)
+|||||+|.||+.+|++|...|++|.+||++.. .+... ..| +.. .+++++++. +|+|++|+|....+
T Consensus 3 kIgVIG~G~mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v 82 (478)
T 1pgj_A 3 DVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT 82 (478)
T ss_dssp SEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHH
T ss_pred EEEEEChHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHH
Confidence 699999999999999999999999999998752 22222 225 433 378888874 99999999965566
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~ 348 (656)
..++ ++....+++|.+|||++.|...+.+.+.+.+.+..+...+.-+++.
T Consensus 83 ~~vl-~~l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg 132 (478)
T 1pgj_A 83 DSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGG 132 (478)
T ss_dssp HHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESH
T ss_pred HHHH-HHHHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCC
Confidence 6666 4455678999999999998877777787778764343333344443
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.63 E-value=1.9e-08 Score=102.41 Aligned_cols=101 Identities=12% Similarity=0.178 Sum_probs=75.1
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCCC-hhHH-HHcCCeec-CHHHHhccCCEEEEccCCCcccc
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYAP-ADKA-RAVGVELV-SFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~~-~~~a-~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
+..++.+++|||||+|.||+.+|+.+...|++ |.+||++.. .+.. ...|+... +++++++++|+|++|+|.. ...
T Consensus 4 m~~~~~~m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~ 82 (266)
T 3d1l_A 4 MKRSIEDTPIVLIGAGNLATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFA 82 (266)
T ss_dssp ---CGGGCCEEEECCSHHHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHH
T ss_pred hhcCCCCCeEEEEcCCHHHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHH
Confidence 34456678999999999999999999988998 899998752 2223 33377654 7889999999999999944 334
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
.++ ++....+++++++++++.|...+
T Consensus 83 ~v~-~~l~~~~~~~~ivv~~s~~~~~~ 108 (266)
T 3d1l_A 83 ELL-QGIVEGKREEALMVHTAGSIPMN 108 (266)
T ss_dssp HHH-HHHHTTCCTTCEEEECCTTSCGG
T ss_pred HHH-HHHHhhcCCCcEEEECCCCCchH
Confidence 444 33445688999999999886643
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=98.61 E-value=3e-08 Score=102.40 Aligned_cols=91 Identities=22% Similarity=0.406 Sum_probs=72.7
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
++|+|||+ |.||+.+|+.|...|++|.+||++. ..+.+.+.|+...++.+++++||+|++|+|... +..++ .+...
T Consensus 12 m~I~iIG~tG~mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~aDvVi~av~~~~-~~~v~-~~l~~ 89 (286)
T 3c24_A 12 KTVAILGAGGKMGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLTDGDGWIDEADVVVLALPDNI-IEKVA-EDIVP 89 (286)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCCCSSGGGGTCSEEEECSCHHH-HHHHH-HHHGG
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcCCHHHHhcCCCEEEEcCCchH-HHHHH-HHHHH
Confidence 58999999 9999999999999999999999875 234444567665677888999999999999443 45554 34445
Q ss_pred cCCCCcEEEEcCCCc
Q 006212 308 KMKKGVRIVNVARGG 322 (656)
Q Consensus 308 ~mK~gailINvaRg~ 322 (656)
.++++++|||++.|.
T Consensus 90 ~l~~~~ivv~~s~~~ 104 (286)
T 3c24_A 90 RVRPGTIVLILDAAA 104 (286)
T ss_dssp GSCTTCEEEESCSHH
T ss_pred hCCCCCEEEECCCCc
Confidence 689999999988765
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=98.60 E-value=8.8e-08 Score=106.15 Aligned_cols=134 Identities=16% Similarity=0.172 Sum_probs=89.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCCh-hHH---------------HH----cCCee-cCHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPA-DKA---------------RA----VGVEL-VSFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~-~~a---------------~~----~g~~~-~~l~ell~~aDv 286 (656)
++|+|||+|.||..+|..|... |++|++||++... +.. .. .++.. .++++.+++||+
T Consensus 6 mkI~VIG~G~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDv 85 (467)
T 2q3e_A 6 KKICCIGAGYVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADL 85 (467)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCE
Confidence 5899999999999999999877 8999999987421 111 11 23443 378889999999
Q ss_pred EEEccCCCccccccc-------------cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEee---ccCCCC
Q 006212 287 ISLHMPLNPTTSKIF-------------NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALD---VFTEEP 350 (656)
Q Consensus 287 V~l~~Plt~~T~~li-------------~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lD---V~~~EP 350 (656)
|++|+|......+.+ -+.....|++++++||+++..+-..+.+.+.+++... .++| .+..|+
T Consensus 86 ViiaVptp~~~~~v~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~--~~~d~~V~~~Pe~ 163 (467)
T 2q3e_A 86 VFISVNTPTKTYGMGKGRAADLKYIEACARRIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTK--PNLNLQVLSNPEF 163 (467)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCC--TTCEEEEEECCCC
T ss_pred EEEEcCCchhhccccccCCCcHHHHHHHHHHHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCC--CCCCeEEEeCHHH
Confidence 999999443332211 1234456899999999998777667777777766432 1122 355555
Q ss_pred CCCCC---ccccCCcEEE
Q 006212 351 PAKDS---KLVQHENVTV 365 (656)
Q Consensus 351 ~~~~~---~L~~~~nvil 365 (656)
..... .++..+++++
T Consensus 164 ~~~G~~~~d~~~~~rivv 181 (467)
T 2q3e_A 164 LAEGTAIKDLKNPDRVLI 181 (467)
T ss_dssp CCTTSHHHHHHSCSCEEE
T ss_pred hhcccchhhccCCCEEEE
Confidence 43332 2455666754
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=3.4e-08 Score=98.07 Aligned_cols=94 Identities=14% Similarity=0.227 Sum_probs=71.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+++|+|||+|.||+.+|+.+...|++|.++|++.. .+...+.|+...+++++++++|+|++|+|. .....++. +
T Consensus 27 ~~~~I~iiG~G~~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~DvVi~av~~-~~~~~v~~---l 102 (215)
T 2vns_A 27 EAPKVGILGSGDFARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVTFQEEAVSSPEVIFVAVFR-EHYSSLCS---L 102 (215)
T ss_dssp --CCEEEECCSHHHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEEEHHHHTTSCSEEEECSCG-GGSGGGGG---G
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCceecHHHHHhCCCEEEECCCh-HHHHHHHH---H
Confidence 457899999999999999999999999999998742 223333466666888999999999999994 44555553 3
Q ss_pred hcCCCCcEEEEcCCCchhc
Q 006212 307 AKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivd 325 (656)
..+.+++++||+++|.-.+
T Consensus 103 ~~~~~~~~vv~~s~g~~~~ 121 (215)
T 2vns_A 103 SDQLAGKILVDVSNPTEQE 121 (215)
T ss_dssp HHHHTTCEEEECCCCCHHH
T ss_pred HHhcCCCEEEEeCCCcccc
Confidence 3333899999999987543
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=3e-07 Score=100.88 Aligned_cols=115 Identities=15% Similarity=0.113 Sum_probs=80.2
Q ss_pred ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH------------------cCCee-cCHHHHh
Q 006212 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA------------------VGVEL-VSFDQAL 281 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~------------------~g~~~-~~l~ell 281 (656)
.++++..-++|+|||+|.||..+|..|.. |++|++||+.... +...+ .++.. .++++.+
T Consensus 29 ~~~r~~~~mkIaVIGlG~mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~ 107 (432)
T 3pid_A 29 QMGRGSEFMKITISGTGYVGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAY 107 (432)
T ss_dssp ------CCCEEEEECCSHHHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHH
T ss_pred ccccccCCCEEEEECcCHHHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHH
Confidence 35667777899999999999999999988 9999999987522 22111 12333 3788999
Q ss_pred ccCCEEEEccCCCccc-------ccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 282 ATADFISLHMPLNPTT-------SKIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T-------~~li~--~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++||+|++|+|...+. ..+.. +.... |++|+++|+.+...+-..+.+.+.+.+..+
T Consensus 108 ~~aDvViiaVPt~~~~~~~~~Dl~~V~~v~~~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~v 172 (432)
T 3pid_A 108 RNADYVIIATPTDYDPKTNYFNTSTVEAVIRDVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDNV 172 (432)
T ss_dssp TTCSEEEECCCCEEETTTTEEECHHHHHHHHHHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCCE
T ss_pred hCCCEEEEeCCCccccccccccHHHHHHHHHHHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhccE
Confidence 9999999999954211 12221 33455 899999999998777667788777776544
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.2e-07 Score=93.72 Aligned_cols=81 Identities=15% Similarity=0.292 Sum_probs=61.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..++.+++|+|||+|.||+.+|+.|...|++|.+||++.. .+++||+|++|+| .+.+..++.
T Consensus 14 ~~~~~~~~I~iiG~G~mG~~la~~l~~~g~~V~~~~~~~~----------------~~~~aD~vi~av~-~~~~~~v~~- 75 (209)
T 2raf_A 14 NLYFQGMEITIFGKGNMGQAIGHNFEIAGHEVTYYGSKDQ----------------ATTLGEIVIMAVP-YPALAALAK- 75 (209)
T ss_dssp ------CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTCC----------------CSSCCSEEEECSC-HHHHHHHHH-
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHH----------------HhccCCEEEEcCC-cHHHHHHHH-
Confidence 4578899999999999999999999999999999998743 4678999999999 555665553
Q ss_pred HHHhcCCCCcEEEEcCCCch
Q 006212 304 ETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~i 323 (656)
+....++ +++++|+++|--
T Consensus 76 ~l~~~~~-~~~vi~~~~g~~ 94 (209)
T 2raf_A 76 QYATQLK-GKIVVDITNPLN 94 (209)
T ss_dssp HTHHHHT-TSEEEECCCCBC
T ss_pred HHHHhcC-CCEEEEECCCCC
Confidence 2334567 999999998653
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=9.9e-07 Score=91.74 Aligned_cols=114 Identities=15% Similarity=0.139 Sum_probs=75.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC------------------Cee-cCHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG------------------VEL-VSFD 278 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g------------------~~~-~~l~ 278 (656)
++|+|||.|.||..+|..+...|++|++||++.. .+.+ .+.| +.. .+++
T Consensus 16 ~~I~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (302)
T 1f0y_A 16 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 95 (302)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHH
Confidence 6899999999999999999988999999998742 2211 1122 222 3788
Q ss_pred HHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccC
Q 006212 279 QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (656)
Q Consensus 279 ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~ 347 (656)
+.+++||+|++++|...+.+..+-.+....++++++|+....+- ....+.+.+.. .++ .+.+.+.
T Consensus 96 ~~~~~aD~Vi~avp~~~~~~~~v~~~l~~~~~~~~iv~s~ts~i--~~~~l~~~~~~~~~~--~g~h~~~ 161 (302)
T 1f0y_A 96 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSL--QITSIANATTRQDRF--AGLHFFN 161 (302)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEECS
T ss_pred HhhcCCCEEEEcCcCcHHHHHHHHHHHHhhCCCCeEEEECCCCC--CHHHHHHhcCCcccE--EEEecCC
Confidence 88999999999999654333222233444578899988655443 33455555543 234 4445443
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.52 E-value=1.7e-07 Score=86.76 Aligned_cols=87 Identities=16% Similarity=0.186 Sum_probs=69.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcCCee---cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVGVEL---VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~---~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
|++++|||.|.||+.+++.|+.+|++|.++|++... ..+.+.+... .+++++++++|+|+.|+|.. ..++..
T Consensus 21 ~~~v~iiG~G~iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~---~~~~~~ 97 (144)
T 3oj0_A 21 GNKILLVGNGMLASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSK---TPIVEE 97 (144)
T ss_dssp CCEEEEECCSHHHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCS---SCSBCG
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCC---CcEeeH
Confidence 899999999999999999999999999999987522 2345556542 37889999999999999955 234443
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 006212 304 ETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg 321 (656)
..+++|.+++|++..
T Consensus 98 ---~~l~~g~~vid~~~p 112 (144)
T 3oj0_A 98 ---RSLMPGKLFIDLGNP 112 (144)
T ss_dssp ---GGCCTTCEEEECCSS
T ss_pred ---HHcCCCCEEEEccCC
Confidence 447889999999853
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.7e-07 Score=94.73 Aligned_cols=102 Identities=20% Similarity=0.295 Sum_probs=74.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC----EEEEECCCCC-hhHH-HHcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM----NVIAHDPYAP-ADKA-RAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~----~Vi~~d~~~~-~~~a-~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
++|||||+|+||+.+|+.+...|+ +|.+||++.. .+.. .+.|+... ++++++++||+|++|+| ......++
T Consensus 3 ~~i~iIG~G~mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~- 80 (247)
T 3gt0_A 3 KQIGFIGCGNMGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASII- 80 (247)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC-
T ss_pred CeEEEECccHHHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHH-
Confidence 589999999999999999999998 9999999752 2333 34587765 89999999999999997 33344444
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++....++++.++|.+..|- ..+.+.+.+..
T Consensus 81 ~~l~~~l~~~~~vvs~~~gi--~~~~l~~~~~~ 111 (247)
T 3gt0_A 81 NEIKEIIKNDAIIVTIAAGK--SIESTENAFNK 111 (247)
T ss_dssp ---CCSSCTTCEEEECSCCS--CHHHHHHHHCS
T ss_pred HHHHhhcCCCCEEEEecCCC--CHHHHHHHhCC
Confidence 33444578898888765443 34455555544
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.46 E-value=5.4e-07 Score=93.16 Aligned_cols=109 Identities=14% Similarity=0.172 Sum_probs=79.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC---EEEEECCCCC-hhHHHH-cCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM---NVIAHDPYAP-ADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d~~~~-~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.++|||||+|+||+.+|+.+...|+ +|.+||++.. .+...+ .|+... +..+++++||+|++|+|. .....++
T Consensus 3 ~~~I~iIG~G~mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~p-~~~~~vl- 80 (280)
T 3tri_A 3 TSNITFIGGGNMARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVKP-HQIKMVC- 80 (280)
T ss_dssp CSCEEEESCSHHHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSCG-GGHHHHH-
T ss_pred CCEEEEEcccHHHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeCH-HHHHHHH-
Confidence 4789999999999999999998888 8999999863 333333 487765 889999999999999983 3334444
Q ss_pred HHHHhc-CCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEE
Q 006212 303 DETFAK-MKKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (656)
Q Consensus 303 ~~~l~~-mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA 341 (656)
++.-.. ++++++||.+..|- ..+.+.+.+.. .++.++
T Consensus 81 ~~l~~~~l~~~~iiiS~~agi--~~~~l~~~l~~~~~vvr~ 119 (280)
T 3tri_A 81 EELKDILSETKILVISLAVGV--TTPLIEKWLGKASRIVRA 119 (280)
T ss_dssp HHHHHHHHTTTCEEEECCTTC--CHHHHHHHHTCCSSEEEE
T ss_pred HHHHhhccCCCeEEEEecCCC--CHHHHHHHcCCCCeEEEE
Confidence 233334 68888888887553 34566666665 355443
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-07 Score=97.67 Aligned_cols=103 Identities=18% Similarity=0.295 Sum_probs=77.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCC---hhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAP---ADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~---~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
.++|||||+|.||..+|..|...| .+|.+||+... .+...+.|+... +..+++++||+|++|+| ......+
T Consensus 22 ~mkI~iIG~G~mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~v 100 (322)
T 2izz_A 22 SMSVGFIGAGQLAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFI 100 (322)
T ss_dssp CCCEEEESCSHHHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHH
Confidence 457999999999999999999888 79999998763 344456688765 78899999999999999 4445555
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
+. +....++++.+||+++-|-- .+.+.+.+.+
T Consensus 101 l~-~l~~~l~~~~ivvs~s~gi~--~~~l~~~l~~ 132 (322)
T 2izz_A 101 LD-EIGADIEDRHIVVSCAAGVT--ISSIEKKLSA 132 (322)
T ss_dssp HH-HHGGGCCTTCEEEECCTTCC--HHHHHHHHHT
T ss_pred HH-HHHhhcCCCCEEEEeCCCCC--HHHHHHHHhh
Confidence 42 34456889999999976532 3345555543
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-07 Score=98.36 Aligned_cols=128 Identities=23% Similarity=0.225 Sum_probs=84.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cCC-------------ee-cCHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VGV-------------EL-VSFDQALA 282 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g~-------------~~-~~l~ell~ 282 (656)
-++|||||+|.||..+|..+...|++|++||++.. .+.+.+ .|. .. .+++ .++
T Consensus 5 ~~kVgVIGaG~MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~ 83 (483)
T 3mog_A 5 VQTVAVIGSGTMGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALA 83 (483)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGG
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-Hhc
Confidence 35899999999999999999999999999998752 222221 221 22 2554 689
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEE-EEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRI-VNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gail-INvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~ 361 (656)
+||+|+.|+|...+.+.-+-.+....++++++| +|++.-.+ ..+.+.+... -...+++.|..-|. . +
T Consensus 84 ~aDlVIeAVpe~~~vk~~v~~~l~~~~~~~~IlasntSti~i---~~ia~~~~~p-~~~ig~hf~~Pa~v---~-----~ 151 (483)
T 3mog_A 84 AADLVIEAASERLEVKKALFAQLAEVCPPQTLLTTNTSSISI---TAIAAEIKNP-ERVAGLHFFNPAPV---M-----K 151 (483)
T ss_dssp GCSEEEECCCCCHHHHHHHHHHHHHHSCTTCEEEECCSSSCH---HHHTTTSSSG-GGEEEEEECSSTTT---C-----C
T ss_pred CCCEEEEcCCCcHHHHHHHHHHHHHhhccCcEEEecCCCCCH---HHHHHHccCc-cceEEeeecChhhh---C-----C
Confidence 999999999966554433334555668999999 57765443 4555555432 22356676654432 2 3
Q ss_pred cEEEcCCC
Q 006212 362 NVTVTPHL 369 (656)
Q Consensus 362 nvilTPH~ 369 (656)
-+.+.|+-
T Consensus 152 Lvevv~g~ 159 (483)
T 3mog_A 152 LVEVVSGL 159 (483)
T ss_dssp EEEEEECS
T ss_pred eEEEecCC
Confidence 45566654
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6.2e-07 Score=90.82 Aligned_cols=99 Identities=13% Similarity=0.223 Sum_probs=73.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
++|||||+|.||+.+|+.+...|.+|.+||++.. .+.. ...|+... +++++++++|+|++|+| .... .+.+
T Consensus 4 m~i~iiG~G~mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~-----~~v~ 77 (259)
T 2ahr_A 4 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLF-----ETVL 77 (259)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGH-----HHHH
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhH-----HHHH
Confidence 4899999999999999999988999999998752 2222 23477654 79999999999999999 4332 3445
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
..++++.+++++..|-- .+.+.+.+..+
T Consensus 78 ~~l~~~~~vv~~~~~~~--~~~l~~~~~~~ 105 (259)
T 2ahr_A 78 KPLHFKQPIISMAAGIS--LQRLATFVGQD 105 (259)
T ss_dssp TTSCCCSCEEECCTTCC--HHHHHHHHCTT
T ss_pred HHhccCCEEEEeCCCCC--HHHHHHhcCCC
Confidence 55778999999976543 34455555544
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=96.30 Aligned_cols=105 Identities=17% Similarity=0.192 Sum_probs=75.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH-------------------cC-Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------VG-VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aDvV 287 (656)
-+++|||+|.+|..+|..|...|++|++||++... +...+ .| +.. .++.+.+++||+|
T Consensus 9 ~~~~vIGlG~vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvv 88 (446)
T 4a7p_A 9 VRIAMIGTGYVGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAV 88 (446)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEE
T ss_pred eEEEEEcCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEE
Confidence 47999999999999999999999999999987632 22211 11 233 3788999999999
Q ss_pred EEccCCCcc----------ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 288 SLHMPLNPT----------TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 288 ~l~~Plt~~----------T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++|+|...+ .+..+ +.....|++|.++|+++.-.+-..+.+.+.+.+
T Consensus 89 ii~Vptp~~~~~~~~Dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e 145 (446)
T 4a7p_A 89 FIAVGTPSRRGDGHADLSYVFAAA-REIAENLTKPSVIVTKSTVPVGTGDEVERIIAE 145 (446)
T ss_dssp EECCCCCBCTTTCCBCTHHHHHHH-HHHHHSCCSCCEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCCccccCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCCCchHHHHHHHHHHH
Confidence 999983321 12222 345567999999999986554445555555544
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-06 Score=91.53 Aligned_cols=90 Identities=22% Similarity=0.189 Sum_probs=69.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CCC-EEEEECCCCC-hh-HHHHcC--Cee-cCHHHHhccCCEEEEccCCCcccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LGM-NVIAHDPYAP-AD-KARAVG--VEL-VSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G~-~Vi~~d~~~~-~~-~a~~~g--~~~-~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
.+++|||||+|.||+.+++.+.. +|+ +|.+||++.. .+ .+...+ +.. .++++++++||+|++|+|. +..+
T Consensus 134 ~~~~igiIG~G~~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~---~~~v 210 (312)
T 2i99_A 134 SSEVLCILGAGVQAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLA---TEPI 210 (312)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCC---SSCC
T ss_pred CCcEEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCC---CCcc
Confidence 56799999999999999999875 487 9999998752 22 233345 554 3799999999999999994 3455
Q ss_pred ccHHHHhcCCCCcEEEEcCCCch
Q 006212 301 FNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~i 323 (656)
+.. ..+++|.+|++++....
T Consensus 211 ~~~---~~l~~g~~vi~~g~~~p 230 (312)
T 2i99_A 211 LFG---EWVKPGAHINAVGASRP 230 (312)
T ss_dssp BCG---GGSCTTCEEEECCCCST
T ss_pred cCH---HHcCCCcEEEeCCCCCC
Confidence 654 46899999999976544
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=4e-07 Score=92.25 Aligned_cols=98 Identities=18% Similarity=0.254 Sum_probs=70.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC-hhHHHH-cCCeec-CHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-ADKARA-VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~-~~~a~~-~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
++|||||+|.||+.+|+.|...| .+|.+||++.. .+...+ .|+... ++++++ ++|+|++|+| ......++
T Consensus 1 m~i~iiG~G~mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~---- 74 (263)
T 1yqg_A 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAAC---- 74 (263)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHH----
T ss_pred CEEEEECchHHHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHH----
Confidence 37999999999999999999889 99999998752 233333 477654 677888 9999999999 44443333
Q ss_pred HhcCC-CCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 306 FAKMK-KGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 306 l~~mK-~gailINvaRg~ivde~aL~~aL~~g 336 (656)
..++ ++++|++++.|-- .+.+.+.+..+
T Consensus 75 -~~l~~~~~ivv~~~~g~~--~~~l~~~~~~~ 103 (263)
T 1yqg_A 75 -KNIRTNGALVLSVAAGLS--VGTLSRYLGGT 103 (263)
T ss_dssp -TTCCCTTCEEEECCTTCC--HHHHHHHTTSC
T ss_pred -HHhccCCCEEEEecCCCC--HHHHHHHcCCC
Confidence 3333 2899999965533 25666666654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.3e-06 Score=96.48 Aligned_cols=105 Identities=22% Similarity=0.221 Sum_probs=74.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHH-------------------cC-Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARA-------------------VG-VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~-------------------~g-~~~-~~l~ell~~aDvV 287 (656)
++|+|||+|.||..+|..|...|++|++||++... +...+ .+ +.. .++++++++||+|
T Consensus 3 mkI~VIG~G~vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvV 82 (450)
T 3gg2_A 3 LDIAVVGIGYVGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADII 82 (450)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEE
T ss_pred CEEEEECcCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEE
Confidence 58999999999999999999999999999987522 22221 11 233 3788999999999
Q ss_pred EEccCCCc---------cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 288 SLHMPLNP---------TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 288 ~l~~Plt~---------~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++|+|... ..+..+ +.....++++.++|+++.-.+-..+.+.+.+.+
T Consensus 83 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~ 138 (450)
T 3gg2_A 83 FIAVGTPAGEDGSADMSYVLDAA-RSIGRAMSRYILIVTKSTVPVGSYRLIRKAIQE 138 (450)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEcCCCcccCCCcChHHHHHHH-HHHHhhCCCCCEEEEeeeCCCcchHHHHHHHHH
Confidence 99999442 122222 344556899999999996444344555554443
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=3.5e-06 Score=93.26 Aligned_cols=113 Identities=19% Similarity=0.254 Sum_probs=74.9
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cC-----------Cee-cCHHHHhccC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VG-----------VEL-VSFDQALATA 284 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g-----------~~~-~~l~ell~~a 284 (656)
=++|+|||.|.||..+|..+...|++|++||++.. .+.+.+ .| ... .++ +.+++|
T Consensus 37 ~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~a 115 (463)
T 1zcj_A 37 VSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTV 115 (463)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCC
Confidence 36899999999999999999999999999998752 222211 11 112 256 568899
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeecc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVF 346 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~ 346 (656)
|+|+.|+|...+.+.-+-.+....++++++|+....+- ....+.+.+.. .++ .+.+.|
T Consensus 116 DlVIeaVpe~~~~k~~v~~~l~~~~~~~~ii~snTs~~--~~~~la~~~~~~~~~--ig~hf~ 174 (463)
T 1zcj_A 116 DLVVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLV--IGTHFF 174 (463)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEEEC
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCc--CHHHHHHHhcCCcce--EEeecC
Confidence 99999999543333322234445689999998744332 33466665543 344 455666
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.2e-06 Score=96.25 Aligned_cols=105 Identities=15% Similarity=0.189 Sum_probs=74.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-------------------cC-Cee-cCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-------------------VG-VEL-VSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-------------------~g-~~~-~~l~ell~~aDvV 287 (656)
++|+|||+|.||..+|..|...|++|++||++.. .+...+ .| +.. .++++.+++||+|
T Consensus 1 mkI~VIG~G~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvv 80 (436)
T 1mv8_A 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (436)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEE
Confidence 3799999999999999999999999999998742 222222 22 333 3788889999999
Q ss_pred EEccCCCcc---------ccccccHHHHhcCCC---CcEEEEcCCCchhc-HHHHHHhHhc
Q 006212 288 SLHMPLNPT---------TSKIFNDETFAKMKK---GVRIVNVARGGVID-EEALVRALDS 335 (656)
Q Consensus 288 ~l~~Plt~~---------T~~li~~~~l~~mK~---gailINvaRg~ivd-e~aL~~aL~~ 335 (656)
++|+|.... ....+ +.....|++ +++||+++...+-. .+.+.+.+++
T Consensus 81 iiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~ 140 (436)
T 1mv8_A 81 FICVGTPSKKNGDLDLGYIETVC-REIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIED 140 (436)
T ss_dssp EECCCCCBCTTSSBCCHHHHHHH-HHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHH
T ss_pred EEEcCCCcccCCCcchHHHHHHH-HHHHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHH
Confidence 999995443 22222 233445788 99999998766544 5556665654
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=98.27 E-value=3.1e-06 Score=85.36 Aligned_cols=70 Identities=9% Similarity=0.145 Sum_probs=56.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
-.+|||||+|+||.++|+.|+..|++|.+||+. ++ +++|| ++|+|.. .+..++ .+....
T Consensus 6 ~mkI~IIG~G~~G~sLA~~L~~~G~~V~~~~~~----------------~~-~~~aD--ilavP~~-ai~~vl-~~l~~~ 64 (232)
T 3dfu_A 6 RLRVGIFDDGSSTVNMAEKLDSVGHYVTVLHAP----------------ED-IRDFE--LVVIDAH-GVEGYV-EKLSAF 64 (232)
T ss_dssp CCEEEEECCSCCCSCHHHHHHHTTCEEEECSSG----------------GG-GGGCS--EEEECSS-CHHHHH-HHHHTT
T ss_pred CcEEEEEeeCHHHHHHHHHHHHCCCEEEEecCH----------------HH-hccCC--EEEEcHH-HHHHHH-HHHHHh
Confidence 368999999999999999999999999999972 12 57899 8999954 455555 344556
Q ss_pred CCCCcEEEEcC
Q 006212 309 MKKGVRIVNVA 319 (656)
Q Consensus 309 mK~gailINva 319 (656)
+++|++++|++
T Consensus 65 l~~g~ivvd~s 75 (232)
T 3dfu_A 65 ARRGQMFLHTS 75 (232)
T ss_dssp CCTTCEEEECC
T ss_pred cCCCCEEEEEC
Confidence 89999999984
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.26 E-value=9.6e-06 Score=83.90 Aligned_cols=81 Identities=21% Similarity=0.285 Sum_probs=68.0
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|++|..++++. .++++.+++||+|+.++|. .+++
T Consensus 154 ~~i~l~Gk~vvVvGrs~iVG~p~A~lL~~~gAtVtv~h~~t------------~~L~~~~~~ADIVI~Avg~----p~~I 217 (285)
T 3p2o_A 154 YEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVSVCHIKT------------KDLSLYTRQADLIIVAAGC----VNLL 217 (285)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHTTCSEEEECSSC----TTCB
T ss_pred hCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhhcCCEEEECCCC----CCcC
Confidence 46789999999999998 69999999999999999998642 2588999999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+. +|+|+++||++.-.
T Consensus 218 ~~~~---vk~GavVIDVgi~~ 235 (285)
T 3p2o_A 218 RSDM---VKEGVIVVDVGINR 235 (285)
T ss_dssp CGGG---SCTTEEEEECCCEE
T ss_pred CHHH---cCCCeEEEEeccCc
Confidence 6644 59999999999654
|
| >1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-06 Score=85.58 Aligned_cols=73 Identities=11% Similarity=0.110 Sum_probs=60.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccC---ccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEe
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR---NHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~g---g~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~ 631 (656)
-+|.+.+.|+||+++.|+++|+++++||.+|+..+..+| +.|.+.+++++...++++++|+++|+|.+++.+.
T Consensus 5 VtL~I~a~DRpGLLsDIt~vLAe~kiNIltIn~~~~~kG~~ng~A~I~IEV~d~~Le~LL~kLrkI~gV~~V~Rv~ 80 (223)
T 1y7p_A 5 RGLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEEEE 80 (223)
T ss_dssp EEEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEEEC
T ss_pred EEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEEEccccCCcCCEEEEEEEECCCCHHHHHHHHhCCCCeeEEEEEc
Confidence 367788999999999999999999999999999886643 4689999999995559999999999999999883
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.21 E-value=3e-06 Score=89.47 Aligned_cols=87 Identities=24% Similarity=0.247 Sum_probs=66.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHc-CC--------------e-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAV-GV--------------E-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~-g~--------------~-~~~l~ell~~aDvV~l~~P 292 (656)
++|+|||+|.||..+|..|...|++|.+||++. ..+...+. +. . ..+++++++++|+|++|+|
T Consensus 5 mki~iiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 84 (359)
T 1bg6_A 5 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVP 84 (359)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSC
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCC
Confidence 589999999999999999999999999999875 22333333 21 1 2378888999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEc
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINv 318 (656)
... +..++ +.....++++++++++
T Consensus 85 ~~~-~~~~~-~~l~~~l~~~~~vv~~ 108 (359)
T 1bg6_A 85 AIH-HASIA-ANIASYISEGQLIILN 108 (359)
T ss_dssp GGG-HHHHH-HHHGGGCCTTCEEEES
T ss_pred chH-HHHHH-HHHHHhCCCCCEEEEc
Confidence 543 44444 3445568999999999
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.4e-06 Score=88.27 Aligned_cols=98 Identities=16% Similarity=0.186 Sum_probs=69.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC----CEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.++|||||+|.||+.+|+.|...| .+|.+||++... .|+... ++++++++||+|++|+| ......++.
T Consensus 4 ~m~i~iiG~G~mG~~~a~~l~~~g~~~~~~v~~~~~~~~~-----~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~- 76 (262)
T 2rcy_A 4 NIKLGFMGLGQMGSALAHGIANANIIKKENLFYYGPSKKN-----TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLN- 76 (262)
T ss_dssp SSCEEEECCSHHHHHHHHHHHHHTSSCGGGEEEECSSCCS-----SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCCCCCeEEEEeCCccc-----CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHH-
Confidence 358999999999999999998778 689999987533 577654 78899999999999999 444444442
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
+....++++.++++++.-+ .+.+.+.+..+
T Consensus 77 ~l~~~l~~~~vv~~~~gi~---~~~l~~~~~~~ 106 (262)
T 2rcy_A 77 NIKPYLSSKLLISICGGLN---IGKLEEMVGSE 106 (262)
T ss_dssp HSGGGCTTCEEEECCSSCC---HHHHHHHHCTT
T ss_pred HHHHhcCCCEEEEECCCCC---HHHHHHHhCCC
Confidence 2334455555555554332 34555555554
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=98.19 E-value=1.8e-06 Score=89.20 Aligned_cols=107 Identities=16% Similarity=0.202 Sum_probs=74.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-------------cCHHHHhc---cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-------------VSFDQALA---TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-------------~~l~ell~---~aDvV~l~~P 292 (656)
++|+|||+|.||..+|..|...|.+|.+||++. ..+...+.|+.. .+.+++.+ ++|+|++|+|
T Consensus 4 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~ 83 (316)
T 2ew2_A 4 MKIAIAGAGAMGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTK 83 (316)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSC
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEec
Confidence 489999999999999999999999999999875 233334445322 23445544 8999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
. ..+..++ +.....++++++||++..| +-..+.+.+.+...++.
T Consensus 84 ~-~~~~~v~-~~l~~~l~~~~~iv~~~~g-~~~~~~l~~~~~~~~vi 127 (316)
T 2ew2_A 84 A-QQLDAMF-KAIQPMITEKTYVLCLLNG-LGHEDVLEKYVPKENIL 127 (316)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCSS-SCTHHHHTTTSCGGGEE
T ss_pred c-ccHHHHH-HHHHHhcCCCCEEEEecCC-CCcHHHHHHHcCCccEE
Confidence 3 3444444 3344568899999999764 32345666666554443
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=98.17 E-value=2.3e-06 Score=89.56 Aligned_cols=90 Identities=17% Similarity=0.227 Sum_probs=67.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECC--CC-ChhHHHHcCC-----------eec---CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDP--YA-PADKARAVGV-----------ELV---SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~--~~-~~~~a~~~g~-----------~~~---~l~ell~~aDvV~l~~P 292 (656)
++|+|||+|.||..+|..|...|.+|.+||+ +. ..+...+.|. ... ++.+.++++|+|++|+|
T Consensus 1 m~I~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~ 80 (335)
T 1txg_A 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (335)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCC
Confidence 3799999999999999999988999999998 54 2233333332 222 57788899999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
.. .+..++ ..... +++++++|++..|-
T Consensus 81 ~~-~~~~v~-~~i~~-l~~~~~vv~~~ng~ 107 (335)
T 1txg_A 81 TD-GVLPVM-SRILP-YLKDQYIVLISKGL 107 (335)
T ss_dssp GG-GHHHHH-HHHTT-TCCSCEEEECCCSE
T ss_pred hH-HHHHHH-HHHhc-CCCCCEEEEEcCcC
Confidence 44 444444 23345 78899999998764
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=3.3e-06 Score=91.63 Aligned_cols=93 Identities=20% Similarity=0.308 Sum_probs=76.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECC-------CCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP-------YAPADKARAVGVELVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~-------~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
-|+||||+|||||.-|.+-|..||..|.+|++--+ ..+...|.+.|..+.+..|+++.||+|.+.+|... ..
T Consensus 34 ~lkgK~IaVIGyGsQG~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~~~~eA~~~ADvV~~L~PD~~-q~ 112 (491)
T 3ulk_A 34 YLQGKKVVIVGCGAQGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVGTYEELIPQADLVINLTPDKQ-HS 112 (491)
T ss_dssp GGTTSEEEEESCSHHHHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEEEHHHHGGGCSEEEECSCGGG-HH
T ss_pred HHcCCEEEEeCCChHhHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEecCHHHHHHhCCEEEEeCChhh-HH
Confidence 48999999999999999999999999999987532 23456788999999999999999999999999443 33
Q ss_pred ccccHHHHhcCCCCcEEEEcCCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg 321 (656)
.++ +.....||+|+.|. .+.|
T Consensus 113 ~vy-~~I~p~lk~G~~L~-faHG 133 (491)
T 3ulk_A 113 DVV-RTVQPLMKDGAALG-YSHG 133 (491)
T ss_dssp HHH-HHHGGGSCTTCEEE-ESSC
T ss_pred HHH-HHHHhhCCCCCEEE-ecCc
Confidence 444 45888899999876 5665
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.7e-06 Score=84.79 Aligned_cols=114 Identities=17% Similarity=0.213 Sum_probs=77.5
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-HcC-------CeecCHHHHhccCCEEEEccCCCccccc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVG-------VELVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-~~g-------~~~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
++|+|+| .|.||+.+|+.|...|++|.++|++.. .+... ..+ +...+++++++++|+|++++| ...+..
T Consensus 1 m~i~iiGa~G~~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vi~~~~-~~~~~~ 79 (212)
T 1jay_A 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIP-WEHAID 79 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSC-HHHHHH
T ss_pred CeEEEEcCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCChhhHHHHHhcCCEEEEeCC-hhhHHH
Confidence 3799999 999999999999999999999998742 22221 122 334478889999999999999 333444
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhc------------HHHHHHhHhcCCeEEEEeeccCCCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVID------------EEALVRALDSGVVAQAALDVFTEEP 350 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivd------------e~aL~~aL~~g~i~gA~lDV~~~EP 350 (656)
++. +....++ +.++++++.|--.+ .+.+.+.+...++ ++.+.+.|
T Consensus 80 ~~~-~l~~~~~-~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~~~~~----v~~~~~~~ 136 (212)
T 1jay_A 80 TAR-DLKNILR-EKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKV----VSALHTIP 136 (212)
T ss_dssp HHH-HTHHHHT-TSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCSCE----EECCTTCC
T ss_pred HHH-HHHHHcC-CCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCCCCeE----EEEccchH
Confidence 432 2223354 89999999764321 4666666654333 45555554
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.2e-06 Score=93.07 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=70.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc-------C-------------Cee-cCHHHHhccCCE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV-------G-------------VEL-VSFDQALATADF 286 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~-------g-------------~~~-~~l~ell~~aDv 286 (656)
..+|+|||+|.||..+|..|...|++|++||++.. .+...+. | +.. .++++.+++||+
T Consensus 8 ~~~I~VIG~G~vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDv 87 (478)
T 2y0c_A 8 SMNLTIIGSGSVGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDV 87 (478)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSE
T ss_pred CceEEEECcCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCE
Confidence 36899999999999999999999999999998642 2222211 1 222 267788999999
Q ss_pred EEEccCCCc---------cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhH
Q 006212 287 ISLHMPLNP---------TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333 (656)
Q Consensus 287 V~l~~Plt~---------~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL 333 (656)
|++|+|... ..+..+ +.....+++++++|+.+.-.+=..+.+.+.+
T Consensus 88 viiaVptp~~~~~~~dl~~v~~v~-~~i~~~l~~~~iVV~~STv~~gt~~~l~~~l 142 (478)
T 2y0c_A 88 QFIAVGTPPDEDGSADLQYVLAAA-RNIGRYMTGFKVIVDKSTVPVGTAERVRAAV 142 (478)
T ss_dssp EEECCCCCBCTTSSBCCHHHHHHH-HHHHHHCCSCEEEEECSCCCTTHHHHHHHHH
T ss_pred EEEEeCCCcccCCCccHHHHHHHH-HHHHHhcCCCCEEEEeCCcCCCchHHHHHHH
Confidence 999999421 122222 2344568999999999843232334444433
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-06 Score=90.02 Aligned_cols=106 Identities=14% Similarity=0.129 Sum_probs=75.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCC------------------ee-cCHHHHhccCCEEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV------------------EL-VSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~------------------~~-~~l~ell~~aDvV~l 289 (656)
++|+|||+|.||..+|..|.. |++|++||++.. .+...+.+. .. .++.+.+++||+|++
T Consensus 1 MkI~VIG~G~vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvvii 79 (402)
T 1dlj_A 1 MKIAVAGSGYVGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (402)
T ss_dssp CEEEEECCSHHHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEE
Confidence 379999999999999999998 999999998752 222222232 22 257788899999999
Q ss_pred ccCCCc----------cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 290 HMPLNP----------TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 290 ~~Plt~----------~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
|+|... .+...+ +.... ++++.+||+.+.-++-..+.+.+.+....+
T Consensus 80 avpt~~~~~~~~~dl~~v~~v~-~~i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~~v 136 (402)
T 1dlj_A 80 ATPTNYNSRINYFDTQHVETVI-KEVLS-VNSHATLIIKSTIPIGFITEMRQKFQTDRI 136 (402)
T ss_dssp CCCCCEETTTTEECCHHHHHHH-HHHHH-HCSSCEEEECSCCCTTHHHHHHHHTTCSCE
T ss_pred ecCCCcccCCCCccHHHHHHHH-HHHHh-hCCCCEEEEeCCCCccHHHHHHHHhCCCeE
Confidence 999542 122222 23444 889999999877666556777766655444
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-06 Score=91.27 Aligned_cols=94 Identities=17% Similarity=0.187 Sum_probs=70.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcC--------------Cee-cCHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG--------------VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g--------------~~~-~~l~ell~~aDvV~l~~P 292 (656)
.++|+|||.|.+|..+|..|...|.+|.+||+... .+...+.+ +.. .++++.+++||+|++++|
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp 108 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVP 108 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCC
Confidence 46899999999999999999999999999998742 23333322 122 378899999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
. ...+.++ ++....+++++++|++..|-..
T Consensus 109 ~-~~~~~vl-~~i~~~l~~~~ivvs~~kGi~~ 138 (356)
T 3k96_A 109 S-FAFHEVI-TRMKPLIDAKTRIAWGTKGLAK 138 (356)
T ss_dssp H-HHHHHHH-HHHGGGCCTTCEEEECCCSCBT
T ss_pred H-HHHHHHH-HHHHHhcCCCCEEEEEeCCCCc
Confidence 3 3444444 3344568899999999876543
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.10 E-value=2.4e-06 Score=84.94 Aligned_cols=89 Identities=19% Similarity=0.271 Sum_probs=63.5
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCCC-hh-HHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAP-AD-KARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~~-~~-~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
-++|+|||+|.||..+|+.|...|++|.+ +|++.. .+ .+.+.|+.. .+..+.++++|+|++++|. .....++..
T Consensus 23 mmkI~IIG~G~mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~- 100 (220)
T 4huj_A 23 MTTYAIIGAGAIGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVPY-DSIADIVTQ- 100 (220)
T ss_dssp SCCEEEEECHHHHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESCG-GGHHHHHTT-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCCh-HHHHHHHHH-
Confidence 36899999999999999999999999999 998753 22 234456543 3555668999999999993 222222211
Q ss_pred HHhcCCCCcEEEEcCCC
Q 006212 305 TFAKMKKGVRIVNVARG 321 (656)
Q Consensus 305 ~l~~mK~gailINvaRg 321 (656)
+.. .++.++|+++-|
T Consensus 101 -l~~-~~~~ivi~~~~g 115 (220)
T 4huj_A 101 -VSD-WGGQIVVDASNA 115 (220)
T ss_dssp -CSC-CTTCEEEECCCC
T ss_pred -hhc-cCCCEEEEcCCC
Confidence 112 357899999854
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=7.1e-06 Score=89.98 Aligned_cols=105 Identities=18% Similarity=0.268 Sum_probs=71.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee---cCHHHH---------------hccCCEEE
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL---VSFDQA---------------LATADFIS 288 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~---~~l~el---------------l~~aDvV~ 288 (656)
-+|.++.|||+|.+|..+|..|...|++|++||++...-.....|... ..++++ +++||+|+
T Consensus 9 ~~~~~~~ViGlGyvGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvi 88 (431)
T 3ojo_A 9 HHGSKLTVVGLGYIGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFI 88 (431)
T ss_dssp ---CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEE
T ss_pred ccCCccEEEeeCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEE
Confidence 468899999999999999999999999999999875322222223211 133333 45799999
Q ss_pred EccCCCcccc---------cccc--HHHHhcCCCCcEEEEcCCCchhcHHHHHHh
Q 006212 289 LHMPLNPTTS---------KIFN--DETFAKMKKGVRIVNVARGGVIDEEALVRA 332 (656)
Q Consensus 289 l~~Plt~~T~---------~li~--~~~l~~mK~gailINvaRg~ivde~aL~~a 332 (656)
+|+| ||... .+.. +...+.|++|.++|+.+.-.+-..+.+.+.
T Consensus 89 i~Vp-Tp~~~~~~~~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~ 142 (431)
T 3ojo_A 89 IAVP-TPNNDDQYRSCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKP 142 (431)
T ss_dssp ECCC-CCBCSSSSCBBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHH
T ss_pred EEeC-CCccccccCCccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHH
Confidence 9999 44321 1222 345567999999999997666555665543
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=3.9e-06 Score=88.75 Aligned_cols=92 Identities=21% Similarity=0.208 Sum_probs=67.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-------CEEEEECCCCC-----h-hHHHHc--------------CCee-cCHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP-----A-DKARAV--------------GVEL-VSFDQAL 281 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-------~~Vi~~d~~~~-----~-~~a~~~--------------g~~~-~~l~ell 281 (656)
++|+|||+|.||..+|..|...| .+|.+||+... . +...+. ++.. .++++.+
T Consensus 9 mkI~iIG~G~mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (354)
T 1x0v_A 9 KKVCIVGSGNWGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAA 88 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHH
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHH
Confidence 58999999999999999998777 89999998754 2 222211 1222 3688889
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
++||+|++|+|. ..+..++ ++....+++++++|++..|-.
T Consensus 89 ~~aD~Vilav~~-~~~~~v~-~~i~~~l~~~~ivv~~~~Gi~ 128 (354)
T 1x0v_A 89 EDADILIFVVPH-QFIGKIC-DQLKGHLKANATGISLIKGVD 128 (354)
T ss_dssp TTCSEEEECCCG-GGHHHHH-HHHTTCSCTTCEEEECCCCBC
T ss_pred cCCCEEEEeCCH-HHHHHHH-HHHHhhCCCCCEEEEECCccC
Confidence 999999999994 3444444 233445788999999987643
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.2e-05 Score=93.65 Aligned_cols=113 Identities=17% Similarity=0.268 Sum_probs=76.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g-------------~~~-~~l~ell~~ 283 (656)
++|||||+|.||..+|..+...|++|++||++.. .+.+ .+.| +.. .++ +.+++
T Consensus 315 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 393 (715)
T 1wdk_A 315 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGN 393 (715)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGG
T ss_pred CEEEEECCChhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCC
Confidence 5799999999999999999999999999998752 2221 1123 122 245 67899
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~ 347 (656)
||+|+.++|...+.+..+-.+....++++++|+..+++- ....+.+.+.. .++ .+.+.|.
T Consensus 394 aDlVIeaV~e~~~vk~~v~~~l~~~~~~~~IlasntStl--~i~~la~~~~~~~~~--ig~hf~~ 454 (715)
T 1wdk_A 394 VDLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTI--SISLLAKALKRPENF--VGMHFFN 454 (715)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSS--CHHHHGGGCSCGGGE--EEEECCS
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhhCCCCeEEEeCCCCC--CHHHHHHHhcCccce--EEEEccC
Confidence 999999999766544433344556689999997554443 23455555543 234 5566655
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.9e-06 Score=91.32 Aligned_cols=106 Identities=14% Similarity=0.091 Sum_probs=72.4
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEEEECCCCCh-hHHHH-------------------cCCee-cCHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYAPA-DKARA-------------------VGVEL-VSFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~~~-~~a~~-------------------~g~~~-~~l~ell~~aDv 286 (656)
++|+|||+|.||..+|..|... |++|++||++... +...+ .++.. .++.+.+++||+
T Consensus 10 mkI~VIG~G~vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDv 89 (481)
T 2o3j_A 10 SKVVCVGAGYVGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADL 89 (481)
T ss_dssp CEEEEECCSTTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSE
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCE
Confidence 5899999999999999999865 7999999986421 11111 01222 267788899999
Q ss_pred EEEccCCCccc-----------cccc--cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 287 ISLHMPLNPTT-----------SKIF--NDETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 287 V~l~~Plt~~T-----------~~li--~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
|++|+|..... ..+. -+.....++++.+||+++.-.+-..+.+.+.+++
T Consensus 90 vii~Vptp~~~~g~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~ 151 (481)
T 2o3j_A 90 IFISVNTPTKMYGRGKGMAPDLKYVESVSRTIAQYAGGPKIVVEKSTVPVKAAESIGCILRE 151 (481)
T ss_dssp EEECCCCCBCCSSTTTTTSBCCHHHHHHHHHHHHHCCSCEEEEECSCCCTTHHHHHHHHHHH
T ss_pred EEEecCCccccccccccCCCcHHHHHHHHHHHHHhCCCCCEEEECCCCCCCHHHHHHHHHHH
Confidence 99999843211 0111 1334556899999999886555445566666665
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-06 Score=92.36 Aligned_cols=91 Identities=16% Similarity=0.197 Sum_probs=67.4
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcC--------------Cee-cCHHHHhccCCEEEEccCCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVG--------------VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g--------------~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
+|+|||+|.||..+|.+|...|++|.+||+.. ..+...+.+ +.. .+++++++++|+|++|+|.
T Consensus 17 kI~iIG~G~mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~- 95 (366)
T 1evy_A 17 KAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT- 95 (366)
T ss_dssp EEEEECCSHHHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-
T ss_pred eEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-
Confidence 89999999999999999998899999999874 223333322 232 3688889999999999993
Q ss_pred ccccccccHH---HHhcCCC-CcEEEEcCCCc
Q 006212 295 PTTSKIFNDE---TFAKMKK-GVRIVNVARGG 322 (656)
Q Consensus 295 ~~T~~li~~~---~l~~mK~-gailINvaRg~ 322 (656)
..+..++... ....+++ ++++|++..|-
T Consensus 96 ~~~~~v~~~~~~gl~~~l~~~~~ivv~~~~gi 127 (366)
T 1evy_A 96 QFLRGFFEKSGGNLIAYAKEKQVPVLVCTKGI 127 (366)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHTCCEEECCCSC
T ss_pred HHHHHHHHHhHHHHHHhcCccCCEEEEECCcC
Confidence 4444444320 3344677 89999998663
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=4.5e-05 Score=80.44 Aligned_cols=131 Identities=15% Similarity=0.090 Sum_probs=88.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-----------HHcC--------------Ce-ecCHHHHh
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-----------RAVG--------------VE-LVSFDQAL 281 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-----------~~~g--------------~~-~~~l~ell 281 (656)
-++|+|||.|.||+.+|..+...|++|+.||+... .+.+ .+.| +. ..++++.+
T Consensus 6 ~~~VaViGaG~MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~ 85 (319)
T 3ado_A 6 AGDVLIVGSGLVGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAV 85 (319)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHT
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHh
Confidence 46899999999999999999999999999998742 1111 1111 11 23788999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQH 360 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~ 360 (656)
++||+|+=++|-..+.+.-+-++.=+.++++++|-.-.++= ....+.+.++. .++ .+++.|.+-| --||.+
T Consensus 86 ~~ad~ViEav~E~l~iK~~lf~~l~~~~~~~aIlaSNTSsl--~is~ia~~~~~p~r~--ig~HffNP~~---~m~LVE- 157 (319)
T 3ado_A 86 EGVVHIQECVPENLDLKRKIFAQLDSIVDDRVVLSSSSSCL--LPSKLFTGLAHVKQC--IVAHPVNPPY---YIPLVE- 157 (319)
T ss_dssp TTEEEEEECCCSCHHHHHHHHHHHHTTCCSSSEEEECCSSC--CHHHHHTTCTTGGGE--EEEEECSSTT---TCCEEE-
T ss_pred ccCcEEeeccccHHHHHHHHHHHHHHHhhhcceeehhhhhc--cchhhhhhccCCCcE--EEecCCCCcc---ccchHH-
Confidence 99999999999777666544455555589999986554443 34556555554 355 4556554333 246765
Q ss_pred CcEEEcCCC
Q 006212 361 ENVTVTPHL 369 (656)
Q Consensus 361 ~nvilTPH~ 369 (656)
+|-+|+.
T Consensus 158 --iv~g~~T 164 (319)
T 3ado_A 158 --LVPHPET 164 (319)
T ss_dssp --EEECTTC
T ss_pred --hcCCCCC
Confidence 6666664
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.1e-05 Score=89.50 Aligned_cols=101 Identities=17% Similarity=0.147 Sum_probs=70.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CC-EEEEECCCCC----hhHHHH----------------------cC-CeecCHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GM-NVIAHDPYAP----ADKARA----------------------VG-VELVSFDQA 280 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~-~Vi~~d~~~~----~~~a~~----------------------~g-~~~~~l~el 280 (656)
++|+|||+|.+|..+|..+... |+ +|++||+... .-.... .| +...+-.+.
T Consensus 19 mkIaVIGlG~mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd~ea 98 (478)
T 3g79_A 19 KKIGVLGMGYVGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPDFSR 98 (478)
T ss_dssp CEEEEECCSTTHHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESCGGG
T ss_pred CEEEEECcCHHHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCcHHH
Confidence 5899999999999999999998 99 9999998765 221111 12 222222678
Q ss_pred hccCCEEEEccCCCc--------ccccccc--HHHHhcCCCCcEEEEcCCCchhcHHHHH
Q 006212 281 LATADFISLHMPLNP--------TTSKIFN--DETFAKMKKGVRIVNVARGGVIDEEALV 330 (656)
Q Consensus 281 l~~aDvV~l~~Plt~--------~T~~li~--~~~l~~mK~gailINvaRg~ivde~aL~ 330 (656)
+++||+|++|+|... +...+.. +.....|++|.++|+.+.-.+-..+.+.
T Consensus 99 ~~~aDvViiaVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~ 158 (478)
T 3g79_A 99 ISELDAVTLAIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMA 158 (478)
T ss_dssp GGGCSEEEECCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHH
T ss_pred HhcCCEEEEecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHH
Confidence 899999999999542 2222222 3455679999999999865554444443
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.5e-05 Score=91.10 Aligned_cols=113 Identities=12% Similarity=0.105 Sum_probs=74.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cC-------------Cee-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VG-------------VEL-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g-------------~~~-~~l~ell~~ 283 (656)
++|||||.|.||..+|..+...|++|++||++.. .+.+.+ .| +.. .++ +.+++
T Consensus 313 ~kV~VIGaG~MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~ 391 (725)
T 2wtb_A 313 KKVAIIGGGLMGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRD 391 (725)
T ss_dssp CCEEEECCSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTT
T ss_pred cEEEEEcCCHhhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCC
Confidence 5799999999999999999999999999998752 222111 12 112 255 56899
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFT 347 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~ 347 (656)
||+|+.++|...+.+..+-.+....++++++|+...++-. ...+.+.++. .++ .+.+.|.
T Consensus 392 aDlVIeaVpe~~~vk~~v~~~l~~~~~~~~IlasntStl~--i~~la~~~~~p~~~--iG~hf~~ 452 (725)
T 2wtb_A 392 VDMVIEAVIENISLKQQIFADLEKYCPQHCILASNTSTID--LNKIGERTKSQDRI--VGAHFFS 452 (725)
T ss_dssp CSEEEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSSC--HHHHTTTCSCTTTE--EEEEECS
T ss_pred CCEEEEcCcCCHHHHHHHHHHHHhhCCCCcEEEeCCCCCC--HHHHHHHhcCCCCE--EEecCCC
Confidence 9999999996654444333445566899999965444332 2345554533 244 5556665
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=97.98 E-value=4.9e-06 Score=89.20 Aligned_cols=90 Identities=11% Similarity=0.176 Sum_probs=66.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-------CEEEEECCCCC-----h-hHHHHc--------------CCee-cCHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-------MNVIAHDPYAP-----A-DKARAV--------------GVEL-VSFDQAL 281 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-------~~Vi~~d~~~~-----~-~~a~~~--------------g~~~-~~l~ell 281 (656)
++|+|||.|.||..+|..|...| .+|.+||+... . +...+. ++.. .++++.+
T Consensus 22 ~kI~iIGaG~mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~ 101 (375)
T 1yj8_A 22 LKISILGSGNWASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVI 101 (375)
T ss_dssp BCEEEECCSHHHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHH
Confidence 47999999999999999998777 89999998754 2 222221 2233 3678889
Q ss_pred ccCCEEEEccCCCccccccccHHHHh----cCCCCcEEEEcCCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFA----KMKKGVRIVNVARG 321 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~----~mK~gailINvaRg 321 (656)
++||+|++++| ......++. +... .+++++++|++..|
T Consensus 102 ~~aDvVilav~-~~~~~~vl~-~i~~~~~~~l~~~~ivvs~~~G 143 (375)
T 1yj8_A 102 NDADLLIFIVP-CQYLESVLA-SIKESESIKIASHAKAISLTKG 143 (375)
T ss_dssp TTCSEEEECCC-HHHHHHHHH-HHTC---CCCCTTCEEEECCCS
T ss_pred cCCCEEEEcCC-HHHHHHHHH-HHhhhhhccCCCCCEEEEeCCc
Confidence 99999999999 344444442 2333 57889999999876
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-05 Score=82.64 Aligned_cols=82 Identities=13% Similarity=0.257 Sum_probs=68.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|+.|...|.+|..++.+. .++.+.+++||+|+.+++.. +++
T Consensus 153 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~p----~lI 216 (288)
T 1b0a_A 153 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGKP----GFI 216 (288)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCCT----TCB
T ss_pred cCCCCCCCEEEEECCChHHHHHHHHHHHHCCCeEEEEeCCc------------hhHHHHhccCCEEEECCCCc----CcC
Confidence 46789999999999997 59999999999999999997543 35889999999999999822 356
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006212 302 NDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~i 323 (656)
..+. +|+|+++||+|.-.+
T Consensus 217 ~~~~---vk~GavVIDVgi~r~ 235 (288)
T 1b0a_A 217 PGDW---IKEGAIVIDVGINRL 235 (288)
T ss_dssp CTTT---SCTTCEEEECCCEEC
T ss_pred CHHH---cCCCcEEEEccCCcc
Confidence 6655 499999999996543
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=6.1e-06 Score=84.19 Aligned_cols=90 Identities=17% Similarity=0.149 Sum_probs=64.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc---CC----e-ecCHHHHhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV---GV----E-LVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~---g~----~-~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
++|+|||+|.||..+|..|...|.+|.+||+... .+..... |. . ..+..+.++++|+|++|+|.. .+..+
T Consensus 1 m~i~iiG~G~~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~~-~~~~v 79 (291)
T 1ks9_A 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKAW-QVSDA 79 (291)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCGG-GHHHH
T ss_pred CeEEEECcCHHHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecCccccCCCCEEEEEecHH-hHHHH
Confidence 3799999999999999999999999999998753 2211111 21 0 123346778999999999954 34444
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 006212 301 FNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg 321 (656)
+ +.....+++++++|++..|
T Consensus 80 ~-~~l~~~l~~~~~vv~~~~g 99 (291)
T 1ks9_A 80 V-KSLASTLPVTTPILLIHNG 99 (291)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HHHHhhCCCCCEEEEecCC
Confidence 4 3344567889999998654
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.9e-05 Score=81.72 Aligned_cols=81 Identities=20% Similarity=0.300 Sum_probs=67.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|..|...|++|..++.+. .++++.+++||+|+.++|. .+++
T Consensus 155 ~~i~l~Gk~vvVvGrs~iVG~plA~lL~~~gAtVtv~hs~T------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (286)
T 4a5o_A 155 TGADLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFT------------RDLADHVSRADLVVVAAGK----PGLV 218 (286)
T ss_dssp TTCCCTTCEEEEECTTSTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCC------------cCHHHHhccCCEEEECCCC----CCCC
Confidence 46789999999999987 79999999999999999987542 2588899999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+. +|||+++||++.-.
T Consensus 219 ~~~~---vk~GavVIDvgi~~ 236 (286)
T 4a5o_A 219 KGEW---IKEGAIVIDVGINR 236 (286)
T ss_dssp CGGG---SCTTCEEEECCSCS
T ss_pred CHHH---cCCCeEEEEecccc
Confidence 6654 59999999999544
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.7e-05 Score=82.54 Aligned_cols=81 Identities=26% Similarity=0.310 Sum_probs=67.2
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHH--HHhccCCEEEEccCCCccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFD--QALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~--ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.++.||++.|||.|. +|+.+|..|...|++|..++++.. +++ +.+++||+|+.++|. .+
T Consensus 159 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~~~~T~------------~l~l~~~~~~ADIVI~Avg~----p~ 222 (300)
T 4a26_A 159 CGIEMAGKRAVVLGRSNIVGAPVAALLMKENATVTIVHSGTS------------TEDMIDYLRTADIVIAAMGQ----PG 222 (300)
T ss_dssp HTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTSC------------HHHHHHHHHTCSEEEECSCC----TT
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEeCCCC------------CchhhhhhccCCEEEECCCC----CC
Confidence 36789999999999988 699999999999999999987432 345 889999999999994 33
Q ss_pred cccHHHHhcCCCCcEEEEcCCCc
Q 006212 300 IFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ 322 (656)
++..+. +|+|+++||++.-.
T Consensus 223 ~I~~~~---vk~GavVIDvgi~~ 242 (300)
T 4a26_A 223 YVKGEW---IKEGAAVVDVGTTP 242 (300)
T ss_dssp CBCGGG---SCTTCEEEECCCEE
T ss_pred CCcHHh---cCCCcEEEEEeccC
Confidence 566544 59999999998544
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=97.94 E-value=2.2e-05 Score=81.22 Aligned_cols=81 Identities=16% Similarity=0.287 Sum_probs=67.6
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|+.|.+.|++|..++++. .++++.+++||+|+.++|. .+++
T Consensus 155 ~~i~l~Gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 218 (285)
T 3l07_A 155 YGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVTTCHRFT------------TDLKSHTTKADILIVAVGK----PNFI 218 (285)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEEEEeCCc------------hhHHHhcccCCEEEECCCC----CCCC
Confidence 46789999999999998 69999999999999999987542 2588999999999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCc
Q 006212 302 NDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ 322 (656)
..+. +|+|+++||++.-.
T Consensus 219 ~~~~---vk~GavVIDvgi~~ 236 (285)
T 3l07_A 219 TADM---VKEGAVVIDVGINH 236 (285)
T ss_dssp CGGG---SCTTCEEEECCCEE
T ss_pred CHHH---cCCCcEEEEecccC
Confidence 6644 59999999998544
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.4e-05 Score=84.21 Aligned_cols=86 Identities=17% Similarity=0.271 Sum_probs=64.9
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcC-----------Cee-cCHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVG-----------VEL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g-----------~~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
-.+|+|||.|.||..+|.+|...|.+|.+||+.. ..+...+.| +.. .++++ ++.+|+|++++| ..
T Consensus 14 ~~kI~iIG~G~mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk-~~ 91 (335)
T 1z82_A 14 EMRFFVLGAGSWGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIP-VQ 91 (335)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSC-GG
T ss_pred CCcEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECC-HH
Confidence 4589999999999999999998899999999874 223333334 333 36778 899999999999 34
Q ss_pred cccccccHHHHhcCC-CCcEEEEcCCC
Q 006212 296 TTSKIFNDETFAKMK-KGVRIVNVARG 321 (656)
Q Consensus 296 ~T~~li~~~~l~~mK-~gailINvaRg 321 (656)
.++.++ ..++ ++.++|++..|
T Consensus 92 ~~~~v~-----~~l~~~~~~vv~~~nG 113 (335)
T 1z82_A 92 YIREHL-----LRLPVKPSMVLNLSKG 113 (335)
T ss_dssp GHHHHH-----TTCSSCCSEEEECCCC
T ss_pred HHHHHH-----HHhCcCCCEEEEEeCC
Confidence 444433 3344 78999999865
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.94 E-value=4.1e-06 Score=86.82 Aligned_cols=104 Identities=20% Similarity=0.185 Sum_probs=71.6
Q ss_pred CEEEEEecChhHHHHHHHHhcC-----C-CEEEEECCCCChhHHHH-cCCeec--------------CHHHHhccCCEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-----G-MNVIAHDPYAPADKARA-VGVELV--------------SFDQALATADFIS 288 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-----G-~~Vi~~d~~~~~~~a~~-~g~~~~--------------~l~ell~~aDvV~ 288 (656)
++|+|||+|.||..+|.+|... | .+|.+||+....+...+ .|+... +..+.+..+|+|+
T Consensus 9 m~I~iiG~G~mG~~~a~~L~~~~~~~~g~~~V~~~~r~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi 88 (317)
T 2qyt_A 9 IKIAVFGLGGVGGYYGAMLALRAAATDGLLEVSWIARGAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYIL 88 (317)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHTTSSEEEEEECCHHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEE
T ss_pred CEEEEECcCHHHHHHHHHHHhCccccCCCCCEEEEEcHHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEE
Confidence 4799999999999999999877 8 99999998222334444 565432 2335678999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
+|+|... +..++ +.....++++.+||++.-| +-.++.+.+.+...
T Consensus 89 l~vk~~~-~~~v~-~~i~~~l~~~~~iv~~~nG-~~~~~~l~~~l~~~ 133 (317)
T 2qyt_A 89 FCTKDYD-MERGV-AEIRPMIGQNTKILPLLNG-ADIAERMRTYLPDT 133 (317)
T ss_dssp ECCSSSC-HHHHH-HHHGGGEEEEEEEEECSCS-SSHHHHHTTTSCTT
T ss_pred EecCccc-HHHHH-HHHHhhcCCCCEEEEccCC-CCcHHHHHHHCCCC
Confidence 9999543 44443 2333446788999998765 32245666666543
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=97.94 E-value=2.3e-05 Score=80.86 Aligned_cols=110 Identities=15% Similarity=0.247 Sum_probs=82.0
Q ss_pred cccccCCCEEEEEecChh-HHHHHHHHhcC--CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccc
Q 006212 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGL--GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~I-G~~vA~~lk~~--G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.++.||++.|||.|.| |+.+|+.|.+. |.+|..++++. .++.+.+++||+|+.+++.. +
T Consensus 152 ~~i~l~gk~vvVvG~s~iVG~p~A~lL~~~g~~atVtv~h~~t------------~~L~~~~~~ADIVI~Avg~p----~ 215 (281)
T 2c2x_A 152 YDISIAGAHVVVIGRGVTVGRPLGLLLTRRSENATVTLCHTGT------------RDLPALTRQADIVVAAVGVA----H 215 (281)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHTSTTTCCEEEEECTTC------------SCHHHHHTTCSEEEECSCCT----T
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHhcCCCCCEEEEEECch------------hHHHHHHhhCCEEEECCCCC----c
Confidence 367899999999999985 99999999998 89999987543 36889999999999999822 3
Q ss_pred cccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCCCCCCcH
Q 006212 300 IFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPHLGASTK 374 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~T~ 374 (656)
++..+. +|+|+++||+|.-.+- +| ..-||- .+ ..+...+ +||=-||--.
T Consensus 216 ~I~~~~---vk~GavVIDVgi~r~~----------~g----lvGDVd-~~-------v~~~a~~-iTPVPGGVGp 264 (281)
T 2c2x_A 216 LLTADM---VRPGAAVIDVGVSRTD----------DG----LVGDVH-PD-------VWELAGH-VSPNPGGVGP 264 (281)
T ss_dssp CBCGGG---SCTTCEEEECCEEEET----------TE----EEESBC-GG-------GGGTCSE-EECSSSSSHH
T ss_pred ccCHHH---cCCCcEEEEccCCCCC----------CC----ccCccc-cc-------hhhheee-ecCCCCCccH
Confidence 576655 5999999999955432 13 334664 22 2233444 6997777644
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=2e-05 Score=81.19 Aligned_cols=105 Identities=17% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
||++.|+|.|.+|++++..|...|.+|.+++|.... +...+.++...+++++- ++|+|+.++|........+..+.+.
T Consensus 118 ~k~vlvlGaGGaaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~~~~~l~-~~DiVInaTp~Gm~~~~~l~~~~l~ 196 (269)
T 3phh_A 118 YQNALILGAGGSAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCFMEPPKS-AFDLIINATSASLHNELPLNKEVLK 196 (269)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEESSCCSS-CCSEEEECCTTCCCCSCSSCHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEecHHHhc-cCCEEEEcccCCCCCCCCCChHHHH
Confidence 899999999999999999999999999999998632 22226676666666644 9999999999764322335554322
Q ss_pred -cCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 308 -KMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 308 -~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
.++++.+++|+.... ...-+.+|-+.|
T Consensus 197 ~~l~~~~~v~D~vY~P--~T~ll~~A~~~G 224 (269)
T 3phh_A 197 GYFKEGKLAYDLAYGF--LTPFLSLAKELK 224 (269)
T ss_dssp HHHHHCSEEEESCCSS--CCHHHHHHHHTT
T ss_pred hhCCCCCEEEEeCCCC--chHHHHHHHHCc
Confidence 467788888887765 444333333333
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.91 E-value=2e-05 Score=79.06 Aligned_cols=94 Identities=15% Similarity=0.257 Sum_probs=69.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEE-EEECCCCChhHHHHcCCeecCHHHHh-ccCCEEEEccCCCccccccccHHHHhc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAPADKARAVGVELVSFDQAL-ATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~V-i~~d~~~~~~~a~~~g~~~~~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
+|||||+|.||+.+++.+...|+++ .+||+....+ . .+.++++++ .++|+|++|+|... . -+.....
T Consensus 2 ~vgiIG~G~mG~~~~~~l~~~g~~lv~v~d~~~~~~---~---~~~~~~~l~~~~~DvVv~~~~~~~-~----~~~~~~~ 70 (236)
T 2dc1_A 2 LVGLIGYGAIGKFLAEWLERNGFEIAAILDVRGEHE---K---MVRGIDEFLQREMDVAVEAASQQA-V----KDYAEKI 70 (236)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCCCT---T---EESSHHHHTTSCCSEEEECSCHHH-H----HHHHHHH
T ss_pred EEEEECCCHHHHHHHHHHhcCCCEEEEEEecCcchh---h---hcCCHHHHhcCCCCEEEECCCHHH-H----HHHHHHH
Confidence 7999999999999999998789997 5789874211 1 345899999 79999999999331 1 1223445
Q ss_pred CCCCcEEEEcCCCchhcH---HHHHHhHhc
Q 006212 309 MKKGVRIVNVARGGVIDE---EALVRALDS 335 (656)
Q Consensus 309 mK~gailINvaRg~ivde---~aL~~aL~~ 335 (656)
++.|..+++...+..-+. +.|.++.++
T Consensus 71 l~~G~~vv~~~~~~~~~~~~~~~l~~~a~~ 100 (236)
T 2dc1_A 71 LKAGIDLIVLSTGAFADRDFLSRVREVCRK 100 (236)
T ss_dssp HHTTCEEEESCGGGGGSHHHHHHHHHHHHH
T ss_pred HHCCCcEEEECcccCChHHHHHHHHHHHHh
Confidence 788999999987766554 456555544
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=2.9e-05 Score=80.82 Aligned_cols=82 Identities=18% Similarity=0.284 Sum_probs=68.4
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||.|. +|+.+|+.|...|.+|..++.+. .++.+.+++||+|+.+++. .+++
T Consensus 159 ~~i~l~gk~vvVIG~s~iVG~p~A~lL~~~gAtVtv~hs~t------------~~L~~~~~~ADIVI~Avg~----p~~I 222 (301)
T 1a4i_A 159 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKT------------AHLDEEVNKGDILVVATGQ----PEMV 222 (301)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHTTCSEEEECCCC----TTCB
T ss_pred cCCCCCCCEEEEECCCchHHHHHHHHHHhCCCeEEEEECCc------------ccHHHHhccCCEEEECCCC----cccC
Confidence 46789999999999996 69999999999999999997542 3688999999999999984 2356
Q ss_pred cHHHHhcCCCCcEEEEcCCCch
Q 006212 302 NDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~i 323 (656)
..+. +|+|+++||+|.-.+
T Consensus 223 ~~~~---vk~GavVIDVgi~~~ 241 (301)
T 1a4i_A 223 KGEW---IKPGAIVIDCGINYV 241 (301)
T ss_dssp CGGG---SCTTCEEEECCCBC-
T ss_pred CHHH---cCCCcEEEEccCCCc
Confidence 6655 589999999997554
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=9.8e-06 Score=85.35 Aligned_cols=93 Identities=19% Similarity=0.226 Sum_probs=69.6
Q ss_pred cccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCC--hhHHHHcC---Cee--------cCHHHHhccCCEEE
Q 006212 223 VGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAP--ADKARAVG---VEL--------VSFDQALATADFIS 288 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g---~~~--------~~l~ell~~aDvV~ 288 (656)
.|.++.|+++.|||.|.| |+.+|+.|.+.|.+|..+|++.. ...+...+ ... .++.+.+++||+|+
T Consensus 171 ~g~~l~gk~vvVIG~G~iVG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVI 250 (320)
T 1edz_A 171 EGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVI 250 (320)
T ss_dssp TTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEE
T ss_pred cCCCCCCCEEEEECCCcchHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEE
Confidence 577899999999999976 99999999999999999987621 11111111 111 35889999999999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
.+++.. ..++..+. +|+|+++||+|.-
T Consensus 251 sAtg~p---~~vI~~e~---vk~GavVIDVgi~ 277 (320)
T 1edz_A 251 TGVPSE---NYKFPTEY---IKEGAVCINFACT 277 (320)
T ss_dssp ECCCCT---TCCBCTTT---SCTTEEEEECSSS
T ss_pred ECCCCC---cceeCHHH---cCCCeEEEEcCCC
Confidence 999842 22365554 5999999999853
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.89 E-value=2.8e-05 Score=80.02 Aligned_cols=77 Identities=10% Similarity=0.136 Sum_probs=65.1
Q ss_pred cCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 227 LVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 227 l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+.||++.|||.|. +|+.+|+.|.+.|++|..++++. .++++.+++||+|+.++|. .+++..+.
T Consensus 148 l~Gk~vvVvG~s~iVG~plA~lL~~~gAtVtv~~~~t------------~~L~~~~~~ADIVI~Avg~----p~~I~~~~ 211 (276)
T 3ngx_A 148 YHENTVTIVNRSPVVGRPLSMMLLNRNYTVSVCHSKT------------KDIGSMTRSSKIVVVAVGR----PGFLNREM 211 (276)
T ss_dssp CCSCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SCHHHHHHHSSEEEECSSC----TTCBCGGG
T ss_pred cCCCEEEEEcCChHHHHHHHHHHHHCCCeEEEEeCCc------------ccHHHhhccCCEEEECCCC----CccccHhh
Confidence 8999999999986 79999999999999999997642 3688999999999999984 23566654
Q ss_pred HhcCCCCcEEEEcCCCc
Q 006212 306 FAKMKKGVRIVNVARGG 322 (656)
Q Consensus 306 l~~mK~gailINvaRg~ 322 (656)
+|+|+++||+|.-.
T Consensus 212 ---vk~GavVIDvgi~~ 225 (276)
T 3ngx_A 212 ---VTPGSVVIDVGINY 225 (276)
T ss_dssp ---CCTTCEEEECCCEE
T ss_pred ---ccCCcEEEEeccCc
Confidence 59999999998543
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.6e-06 Score=78.75 Aligned_cols=94 Identities=14% Similarity=0.287 Sum_probs=65.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcC-CCEEEEECCCC-ChhHHHHcCCeec-----C---HHHH--hccCCEEEEcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYA-PADKARAVGVELV-----S---FDQA--LATADFISLHM 291 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~~~-~~~~a~~~g~~~~-----~---l~el--l~~aDvV~l~~ 291 (656)
+.++.+++++|+|+|.+|+.+|+.|+.. |++|+++|++. ..+.+.+.|+..+ + +.++ +.++|+|++++
T Consensus 34 ~~~~~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~ 113 (183)
T 3c85_A 34 LINPGHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM 113 (183)
T ss_dssp CBCCTTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC
T ss_pred CcCCCCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC
Confidence 3467789999999999999999999998 99999999875 2344555676432 2 3344 67899999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
|....+..++ ..+..+.+...++...
T Consensus 114 ~~~~~~~~~~--~~~~~~~~~~~ii~~~ 139 (183)
T 3c85_A 114 PHHQGNQTAL--EQLQRRNYKGQIAAIA 139 (183)
T ss_dssp SSHHHHHHHH--HHHHHTTCCSEEEEEE
T ss_pred CChHHHHHHH--HHHHHHCCCCEEEEEE
Confidence 9544333222 2444566565665543
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=1.6e-05 Score=82.19 Aligned_cols=97 Identities=8% Similarity=0.131 Sum_probs=67.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHcCCeec---CHHHHhccCCEEEEccCCC--ccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELV---SFDQALATADFISLHMPLN--PTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt--~~T 297 (656)
+..+.||++.|+|.|.+|+.++..|...|. +|.++++...........+... ++.+.++++|+|+.++|.. +..
T Consensus 112 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~ 191 (277)
T 3don_A 112 YEGIEDAYILILGAGGASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNT 191 (277)
T ss_dssp STTGGGCCEEEECCSHHHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCC
Confidence 346789999999999999999999999998 8999998753211111223332 4556688999999999964 222
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCch
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~i 323 (656)
...+. ...++++.+++|+.....
T Consensus 192 ~~~l~---~~~l~~~~~V~D~vY~P~ 214 (277)
T 3don_A 192 DSVIS---LNRLASHTLVSDIVYNPY 214 (277)
T ss_dssp CCSSC---CTTCCSSCEEEESCCSSS
T ss_pred cCCCC---HHHcCCCCEEEEecCCCC
Confidence 22232 345789999999986543
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=97.88 E-value=1e-05 Score=75.03 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=73.7
Q ss_pred cCCCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccc
Q 006212 227 LVGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 227 l~gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+-++|+|||. |.+|..++++++..|++|+.+||.... -.|+... +++++....|++++++| .+....++
T Consensus 12 ~~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~----i~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~ 86 (138)
T 1y81_A 12 KEFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVA 86 (138)
T ss_dssp --CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHH
T ss_pred cCCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCe----ECCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHH
Confidence 45678999999 999999999999999999999987421 1466654 79999999999999999 55555565
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
. +..+ +..++++++++. ..+++.+..++..+
T Consensus 87 ~-~~~~-~g~~~i~~~~~~----~~~~l~~~a~~~Gi 117 (138)
T 1y81_A 87 K-EAVE-AGFKKLWFQPGA----ESEEIRRFLEKAGV 117 (138)
T ss_dssp H-HHHH-TTCCEEEECTTS----CCHHHHHHHHHHTC
T ss_pred H-HHHH-cCCCEEEEcCcc----HHHHHHHHHHHCCC
Confidence 3 3333 666778887753 24556555555433
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=97.87 E-value=4.8e-05 Score=79.31 Aligned_cols=94 Identities=14% Similarity=0.163 Sum_probs=69.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCC---eec---CHHHHhccCCEEEEccCCCc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGV---ELV---SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~---~~~---~l~ell~~aDvV~l~~Plt~ 295 (656)
.++.|++++|+|.|.+|+.+|..|...|. +|.++|+.... ..+...+. ... ++.+.+.++|+|+.++|...
T Consensus 137 ~~l~~~~vlVlGaGg~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~ 216 (297)
T 2egg_A 137 ITLDGKRILVIGAGGGARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGM 216 (297)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTC
T ss_pred CCCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCC
Confidence 45789999999999999999999999998 99999987522 23334343 333 45567889999999999654
Q ss_pred cc--cc-cccHHHHhcCCCCcEEEEcCCC
Q 006212 296 TT--SK-IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 296 ~T--~~-li~~~~l~~mK~gailINvaRg 321 (656)
.. .. .+. ...++++.+++|+.-.
T Consensus 217 ~~~~~~~~i~---~~~l~~~~~v~D~~y~ 242 (297)
T 2egg_A 217 HPRVEVQPLS---LERLRPGVIVSDIIYN 242 (297)
T ss_dssp SSCCSCCSSC---CTTCCTTCEEEECCCS
T ss_pred CCCCCCCCCC---HHHcCCCCEEEEcCCC
Confidence 21 11 122 2347889999999864
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=97.85 E-value=7.1e-05 Score=78.66 Aligned_cols=88 Identities=20% Similarity=0.380 Sum_probs=67.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-CC-CEEEEECCCCChhHHHH----cCCe--ecCHHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-LG-MNVIAHDPYAPADKARA----VGVE--LVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~G-~~Vi~~d~~~~~~~a~~----~g~~--~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
..++++|||.|.||+.+++.++. ++ -+|.+||++.....+.+ .|+. ..++++++++||+|++|+|.. ..
T Consensus 120 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~a~~la~~l~~~~g~~~~~~~~~eav~~aDIVi~aT~s~---~p 196 (313)
T 3hdj_A 120 RSSVLGLFGAGTQGAEHAAQLSARFALEAILVHDPYASPEILERIGRRCGVPARMAAPADIAAQADIVVTATRST---TP 196 (313)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECTTCCHHHHHHHHHHHTSCEEECCHHHHHHHCSEEEECCCCS---SC
T ss_pred CCcEEEEECccHHHHHHHHHHHHhCCCcEEEEECCcHHHHHHHHHHHhcCCeEEEeCHHHHHhhCCEEEEccCCC---Cc
Confidence 36899999999999999999875 44 58999999832232332 3653 349999999999999999954 34
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg 321 (656)
++.. ..+|+|+.|+++|..
T Consensus 197 vl~~---~~l~~G~~V~~vGs~ 215 (313)
T 3hdj_A 197 LFAG---QALRAGAFVGAIGSS 215 (313)
T ss_dssp SSCG---GGCCTTCEEEECCCS
T ss_pred ccCH---HHcCCCcEEEECCCC
Confidence 5553 348999999999864
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=97.85 E-value=1.2e-05 Score=84.87 Aligned_cols=90 Identities=17% Similarity=0.220 Sum_probs=66.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--------------cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------------VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--------------~~l~ell~~aDvV~l~~Plt 294 (656)
.++|+|||.|.||..+|.+|...|.+|.++|+....+...+.|... .++++ +..+|+|++|+|.
T Consensus 3 ~mkI~IiGaG~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~- 80 (335)
T 3ghy_A 3 LTRICIVGAGAVGGYLGARLALAGEAINVLARGATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA- 80 (335)
T ss_dssp CCCEEEESCCHHHHHHHHHHHHTTCCEEEECCHHHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCEEEEEEChHHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-
Confidence 3689999999999999999999999999999853333444555422 25666 5899999999994
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
..+..++. .....++++++|+.+..|
T Consensus 81 ~~~~~~~~-~l~~~l~~~~~iv~~~nG 106 (335)
T 3ghy_A 81 PALESVAA-GIAPLIGPGTCVVVAMNG 106 (335)
T ss_dssp HHHHHHHG-GGSSSCCTTCEEEECCSS
T ss_pred hhHHHHHH-HHHhhCCCCCEEEEECCC
Confidence 34444432 223346789999999888
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=97.81 E-value=5.9e-05 Score=79.01 Aligned_cols=106 Identities=17% Similarity=0.147 Sum_probs=74.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCe---------------e-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE---------------L-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~---------------~-~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||.|.||..+|..|...|.+|.++++.. .+...+.|+. . .+++++.+.+|+|++++|.
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~ 81 (320)
T 3i83_A 3 LNILVIGTGAIGSFYGALLAKTGHCVSVVSRSD-YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV 81 (320)
T ss_dssp CEEEEESCCHHHHHHHHHHHHTTCEEEEECSTT-HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCh-HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC
Confidence 589999999999999999998899999999875 3444444421 1 2566666689999999994
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
. .+...+ +.....++++++||.+.-| +-.++.+.+.+....+.
T Consensus 82 ~-~~~~~l-~~l~~~l~~~t~Iv~~~nG-i~~~~~l~~~~~~~~vl 124 (320)
T 3i83_A 82 V-EGADRV-GLLRDAVAPDTGIVLISNG-IDIEPEVAAAFPDNEVI 124 (320)
T ss_dssp C-TTCCHH-HHHTTSCCTTCEEEEECSS-SSCSHHHHHHSTTSCEE
T ss_pred C-ChHHHH-HHHHhhcCCCCEEEEeCCC-CChHHHHHHHCCCCcEE
Confidence 4 344443 3333457888999988765 32346666666554443
|
| >2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A | Back alignment and structure |
|---|
Probab=97.79 E-value=4.7e-05 Score=63.86 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=54.6
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEE--eCCCC-CHHHHHHHhcCCCccEEEEEe
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIG--VDEEP-NQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~--~D~~~-~~e~l~~L~~~~~V~~v~~v~ 631 (656)
.|.+...|+||+++.|+++|+++|+||.++.+.+.. + .+.+.+. +.+.. -++++++|+++++|.++..+.
T Consensus 7 ~l~v~~~Dr~G~L~~I~~~la~~~inI~~i~~~~~~-~-~~~~~i~v~~~~~~~l~~l~~~L~~~~~V~~v~~~~ 79 (88)
T 2ko1_A 7 GIRIVGEDKNGMTNQITGVISKFDTNIRTIVLNAKD-G-IFTCNLMIFVKNTDKLTTLMDKLRKVQGVFTVERLS 79 (88)
T ss_dssp EEEEEEECCTTHHHHHHHHHTTSSSCEEEEEEEECS-S-EEEEEEEEEESSHHHHHHHHHHHTTCTTEEEEEEEC
T ss_pred EEEEEEECCCcHHHHHHHHHHHCCCCeEEEEEEEcC-C-EEEEEEEEEECCHHHHHHHHHHHhcCCCceEEEEec
Confidence 345678999999999999999999999999997643 2 5555544 43322 248999999999999987764
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.77 E-value=3.9e-05 Score=71.59 Aligned_cols=99 Identities=15% Similarity=0.136 Sum_probs=61.8
Q ss_pred ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-HcCCeec-----C---HHHH-hccCCEEEEc
Q 006212 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVGVELV-----S---FDQA-LATADFISLH 290 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-~~g~~~~-----~---l~el-l~~aDvV~l~ 290 (656)
.+...+.++++.|+|+|.+|+.+|+.|+..|.+|+++|++.. .+.+. ..|...+ + +.+. +..+|+|+++
T Consensus 12 ~~~~~~~~~~v~IiG~G~iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~ 91 (155)
T 2g1u_A 12 HMSKKQKSKYIVIFGCGRLGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAF 91 (155)
T ss_dssp -----CCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEEC
T ss_pred hhhcccCCCcEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEE
Confidence 356678899999999999999999999999999999998752 23333 4455332 2 2223 6789999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 291 ~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+|....+. . -......+.+...++-..++.
T Consensus 92 ~~~~~~~~-~-~~~~~~~~~~~~~iv~~~~~~ 121 (155)
T 2g1u_A 92 TNDDSTNF-F-ISMNARYMFNVENVIARVYDP 121 (155)
T ss_dssp SSCHHHHH-H-HHHHHHHTSCCSEEEEECSSG
T ss_pred eCCcHHHH-H-HHHHHHHHCCCCeEEEEECCH
Confidence 98432211 1 122333344455555554443
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=97.74 E-value=4.3e-06 Score=85.90 Aligned_cols=85 Identities=9% Similarity=0.051 Sum_probs=55.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEE-EEECCCCC-hhHH-HHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNV-IAHDPYAP-ADKA-RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~V-i~~d~~~~-~~~a-~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+.+|+.+... ++| .+||++.. .+.+ ...|....++++++++||+|++|+|... . .+.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~~~~~~~~~~~~~DvVilav~~~~-~-----~~v~ 75 (276)
T 2i76_A 3 LVLNFVGTGTLTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRY-I-----KTVA 75 (276)
T ss_dssp -CCEEESCCHHHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTTT-H-----HHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCCccCCHHHHHhcCCEEEEeCChHH-H-----HHHH
Confidence 3699999999999999999876 888 48998752 2222 3446522367788899999999999442 2 3333
Q ss_pred hcC-CCCcEEEEcCCC
Q 006212 307 AKM-KKGVRIVNVARG 321 (656)
Q Consensus 307 ~~m-K~gailINvaRg 321 (656)
..+ +++.+|||++-+
T Consensus 76 ~~l~~~~~ivi~~s~~ 91 (276)
T 2i76_A 76 NHLNLGDAVLVHCSGF 91 (276)
T ss_dssp TTTCCSSCCEEECCSS
T ss_pred HHhccCCCEEEECCCC
Confidence 334 688999999844
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.71 E-value=6e-05 Score=76.88 Aligned_cols=100 Identities=17% Similarity=0.233 Sum_probs=72.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHc----CC-eecCHHHHhccCCEEEEccCCC--cccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAV----GV-ELVSFDQALATADFISLHMPLN--PTTS 298 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~----g~-~~~~l~ell~~aDvV~l~~Plt--~~T~ 298 (656)
+.| +++|||.|.+|++++..|...|. +|.++|++. ++++++ +. .+.++.+.++++|+|+.++|.. ++ .
T Consensus 107 ~~~-~vliiGaGg~a~ai~~~L~~~G~~~I~v~nR~~--~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~-~ 182 (253)
T 3u62_A 107 VKE-PVVVVGAGGAARAVIYALLQMGVKDIWVVNRTI--ERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGE-E 182 (253)
T ss_dssp CCS-SEEEECCSHHHHHHHHHHHHTTCCCEEEEESCH--HHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSC-C
T ss_pred CCC-eEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCH--HHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCC-C
Confidence 578 99999999999999999999998 899999874 233322 11 2336778899999999999964 22 2
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
..+..+. ++++.+++|+.-+ ...-+.++.+.|
T Consensus 183 ~~i~~~~---l~~~~~V~Divy~---~T~ll~~A~~~G 214 (253)
T 3u62_A 183 LPVSDDS---LKNLSLVYDVIYF---DTPLVVKARKLG 214 (253)
T ss_dssp CSCCHHH---HTTCSEEEECSSS---CCHHHHHHHHHT
T ss_pred CCCCHHH---hCcCCEEEEeeCC---CcHHHHHHHHCC
Confidence 2344333 5789999999877 444444555444
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00011 Score=76.56 Aligned_cols=106 Identities=15% Similarity=0.207 Sum_probs=74.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee---------------cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL---------------VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~---------------~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.||..+|..|...|.+|.++++.. .+...+.|+.. .+.++ +..+|+|++++|..
T Consensus 3 mkI~IiGaGaiG~~~a~~L~~~g~~V~~~~r~~-~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~~ 80 (312)
T 3hn2_A 3 LRIAIVGAGALGLYYGALLQRSGEDVHFLLRRD-YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKTF 80 (312)
T ss_dssp -CEEEECCSTTHHHHHHHHHHTSCCEEEECSTT-HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCGG
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCeEEEEEcCc-HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCCC
Confidence 579999999999999999998899999999875 44444555421 24444 68999999999943
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g 340 (656)
.+...+ +..-..++++++||.+.-| +-.++.+.+.+...++.+
T Consensus 81 -~~~~~l-~~l~~~l~~~~~iv~l~nG-i~~~~~l~~~~~~~~v~~ 123 (312)
T 3hn2_A 81 -ANSRYE-ELIRPLVEEGTQILTLQNG-LGNEEALATLFGAERIIG 123 (312)
T ss_dssp -GGGGHH-HHHGGGCCTTCEEEECCSS-SSHHHHHHHHTCGGGEEE
T ss_pred -CcHHHH-HHHHhhcCCCCEEEEecCC-CCcHHHHHHHCCCCcEEE
Confidence 344443 2333457889999998866 223566767666555544
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=97.68 E-value=1.9e-05 Score=73.81 Aligned_cols=101 Identities=13% Similarity=0.180 Sum_probs=73.3
Q ss_pred CCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
-++|+|||+ |.+|..++++++..|++|+.+||....+. -.|+... +++++....|++++++| .+....++.
T Consensus 13 p~~IavIGas~~~g~~G~~~~~~L~~~G~~v~~vnp~~~g~~--i~G~~~~~sl~el~~~~Dlvii~vp-~~~v~~v~~- 88 (145)
T 2duw_A 13 TRTIALVGASDKPDRPSYRVMKYLLDQGYHVIPVSPKVAGKT--LLGQQGYATLADVPEKVDMVDVFRN-SEAAWGVAQ- 88 (145)
T ss_dssp CCCEEEESCCSCTTSHHHHHHHHHHHHTCCEEEECSSSTTSE--ETTEECCSSTTTCSSCCSEEECCSC-STHHHHHHH-
T ss_pred CCEEEEECcCCCCCChHHHHHHHHHHCCCEEEEeCCcccccc--cCCeeccCCHHHcCCCCCEEEEEeC-HHHHHHHHH-
Confidence 568999999 89999999999998999999998751011 1466554 78898889999999999 455566653
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..+ ...+.++++.+ .. ++++.+.+++..+
T Consensus 89 ~~~~-~g~~~i~i~~~--~~--~~~l~~~a~~~Gi 118 (145)
T 2duw_A 89 EAIA-IGAKTLWLQLG--VI--NEQAAVLAREAGL 118 (145)
T ss_dssp HHHH-HTCCEEECCTT--CC--CHHHHHHHHTTTC
T ss_pred HHHH-cCCCEEEEcCC--hH--HHHHHHHHHHcCC
Confidence 2333 56667877764 22 5666666776544
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.7e-05 Score=70.62 Aligned_cols=89 Identities=19% Similarity=0.333 Sum_probs=62.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----C---HHH-HhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----S---FDQ-ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Plt~~T~ 298 (656)
.+++.|+|+|.+|+.+|+.|+..|++|+++|++. ..+.+.+.|+..+ + +.+ -+.++|+|++++|...++.
T Consensus 7 ~~~viIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~ 86 (140)
T 3fwz_A 7 CNHALLVGYGRVGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAG 86 (140)
T ss_dssp CSCEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHH
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHH
Confidence 3479999999999999999999999999999875 3344556677532 2 222 2578999999999554433
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
.+. ..+..+.++..+|--.
T Consensus 87 ~~~--~~a~~~~~~~~iiar~ 105 (140)
T 3fwz_A 87 EIV--ASARAKNPDIEIIARA 105 (140)
T ss_dssp HHH--HHHHHHCSSSEEEEEE
T ss_pred HHH--HHHHHHCCCCeEEEEE
Confidence 222 2344455666666443
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00011 Score=78.33 Aligned_cols=90 Identities=18% Similarity=0.223 Sum_probs=66.2
Q ss_pred CCCEEEEEecChhHHHHHHHHh-cCC-CEEEEECCCCC-hh-HHHHc----CC--ee-cCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAK-GLG-MNVIAHDPYAP-AD-KARAV----GV--EL-VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk-~~G-~~Vi~~d~~~~-~~-~a~~~----g~--~~-~~l~ell~~aDvV~l~~Plt~~ 296 (656)
..++++|||.|.+|+.+++.+. ..+ .+|.+||++.. .+ .+... |+ .. .++++++++||+|++|+|.. .
T Consensus 128 ~~~~v~iIGaG~~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~ 206 (350)
T 1x7d_A 128 NARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-A 206 (350)
T ss_dssp TCCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-S
T ss_pred cCCeEEEECCcHHHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-C
Confidence 4679999999999999998875 344 68999998752 22 22222 53 22 37999999999999999965 2
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg 321 (656)
...++.. ..+++|+.+++++..
T Consensus 207 ~~pvl~~---~~l~~G~~V~~vgs~ 228 (350)
T 1x7d_A 207 YATIITP---DMLEPGMHLNAVGGD 228 (350)
T ss_dssp EEEEECG---GGCCTTCEEEECSCC
T ss_pred CCceecH---HHcCCCCEEEECCCC
Confidence 3345543 357999999999864
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=97.61 E-value=8.2e-05 Score=77.98 Aligned_cols=103 Identities=18% Similarity=0.227 Sum_probs=69.7
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe-------------e-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE-------------L-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~-------------~-~~l~ell~~aDvV~l~~ 291 (656)
-..++|+|||.|.||..+|..|...|.+|..| ++. ..+...+.|.. . .++++ +..+|+|++++
T Consensus 17 ~~~~kI~IiGaGa~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilav 94 (318)
T 3hwr_A 17 FQGMKVAIMGAGAVGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCV 94 (318)
T ss_dssp ---CEEEEESCSHHHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECC
T ss_pred ccCCcEEEECcCHHHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEc
Confidence 34678999999999999999999999999999 553 23334444432 1 24444 68999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
|.. .++.++ +.....++++++|+.+..|= -.++.+.+.+.
T Consensus 95 k~~-~~~~~l-~~l~~~l~~~~~iv~~~nGi-~~~~~l~~~~~ 134 (318)
T 3hwr_A 95 KST-DTQSAA-LAMKPALAKSALVLSLQNGV-ENADTLRSLLE 134 (318)
T ss_dssp CGG-GHHHHH-HHHTTTSCTTCEEEEECSSS-SHHHHHHHHCC
T ss_pred ccc-cHHHHH-HHHHHhcCCCCEEEEeCCCC-CcHHHHHHHcC
Confidence 944 444444 23334578899999987663 22355666554
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00013 Score=65.68 Aligned_cols=88 Identities=15% Similarity=0.229 Sum_probs=57.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-HcCCeec-----CHHHH----hccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVGVELV-----SFDQA----LATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-~~g~~~~-----~l~el----l~~aDvV~l~~Plt~~T 297 (656)
+++++|+|+|.+|+.+|+.|...|.+|.++|++.. .+... ..++... +.+.+ +.++|+|++++|.....
T Consensus 4 ~m~i~IiG~G~iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~ 83 (140)
T 1lss_A 4 GMYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVN 83 (140)
T ss_dssp -CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHH
Confidence 57899999999999999999999999999998642 22222 2365321 23222 67899999999843221
Q ss_pred cccccHHHHhcCCCCcEEEEc
Q 006212 298 SKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINv 318 (656)
..-......++++.+++-+
T Consensus 84 --~~~~~~~~~~~~~~ii~~~ 102 (140)
T 1lss_A 84 --LMSSLLAKSYGINKTIARI 102 (140)
T ss_dssp --HHHHHHHHHTTCCCEEEEC
T ss_pred --HHHHHHHHHcCCCEEEEEe
Confidence 1112234446666555543
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00011 Score=64.03 Aligned_cols=87 Identities=22% Similarity=0.224 Sum_probs=60.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC-hhHHHHcCCeec--------CHHHHhccCCEEEEccCCCccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-ADKARAVGVELV--------SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~-~~~a~~~g~~~~--------~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+++++|+|.|.||+.+++.|...| ++|+++|+... .+.....++... ++.++++++|+|+.++|... +
T Consensus 4 ~~~~v~I~G~G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~~-~ 82 (118)
T 3ic5_A 4 MRWNICVVGAGKIGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFFL-T 82 (118)
T ss_dssp TCEEEEEECCSHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGGG-H
T ss_pred CcCeEEEECCCHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCchh-h
Confidence 3679999999999999999999999 89999998752 233333454321 35567889999999998432 1
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
..++ -...+.|...++.+
T Consensus 83 ~~~~----~~~~~~g~~~~~~~ 100 (118)
T 3ic5_A 83 PIIA----KAAKAAGAHYFDLT 100 (118)
T ss_dssp HHHH----HHHHHTTCEEECCC
T ss_pred HHHH----HHHHHhCCCEEEec
Confidence 1111 11235677788876
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.47 E-value=9.1e-05 Score=76.72 Aligned_cols=95 Identities=16% Similarity=0.145 Sum_probs=65.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC----CeecCHHHHhccCCEEEEccCCCcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG----VELVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g----~~~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
+.++.||++.|+|.|.+|+.++..|...|. +|.++++.... +.+.+.+ +...+++++..++|+|+.++|....
T Consensus 121 ~~~l~~k~vlvlGaGg~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~ 200 (281)
T 3o8q_A 121 QVLLKGATILLIGAGGAARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLD 200 (281)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC-
T ss_pred CCCccCCEEEEECchHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCC
Confidence 456889999999999999999999999996 99999987522 2222222 3445677777899999999996532
Q ss_pred cc-ccccHHHHhcCCCCcEEEEcCCC
Q 006212 297 TS-KIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 297 T~-~li~~~~l~~mK~gailINvaRg 321 (656)
.. ..+.. ..++++.+++|+.-.
T Consensus 201 ~~~~~l~~---~~l~~~~~V~DlvY~ 223 (281)
T 3o8q_A 201 GELPAIDP---VIFSSRSVCYDMMYG 223 (281)
T ss_dssp ---CSCCG---GGEEEEEEEEESCCC
T ss_pred CCCCCCCH---HHhCcCCEEEEecCC
Confidence 11 11222 235666777776643
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=97.42 E-value=0.00036 Score=73.51 Aligned_cols=86 Identities=13% Similarity=0.121 Sum_probs=63.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhc-C-CCEEEEECCCCCh-h-HHHHc-----CCeecCHHHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKG-L-GMNVIAHDPYAPA-D-KARAV-----GVELVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~-~-G~~Vi~~d~~~~~-~-~a~~~-----g~~~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
..++++|||.|.+|+.+++.+.. + .-+|.+||++... + .+... .+...++++++ ++|+|++|+|.. .
T Consensus 124 ~~~~v~iIGaG~~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~~~~~~e~v-~aDvVi~aTp~~---~ 199 (322)
T 1omo_A 124 NSSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEAS-RCDVLVTTTPSR---K 199 (322)
T ss_dssp TCCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHT-SSSEEEECCCCS---S
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEEECCHHHHh-CCCEEEEeeCCC---C
Confidence 46799999999999999999875 4 4689999987522 2 22221 13344799999 999999999954 2
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
.++.. ..+++|+.+++++.
T Consensus 200 pv~~~---~~l~~G~~V~~ig~ 218 (322)
T 1omo_A 200 PVVKA---EWVEEGTHINAIGA 218 (322)
T ss_dssp CCBCG---GGCCTTCEEEECSC
T ss_pred ceecH---HHcCCCeEEEECCC
Confidence 44543 35789999998864
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=71.61 Aligned_cols=95 Identities=13% Similarity=0.118 Sum_probs=65.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcC----CeecCHHHHh-ccCCEEEEccCCCccc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----VELVSFDQAL-ATADFISLHMPLNPTT 297 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g----~~~~~l~ell-~~aDvV~l~~Plt~~T 297 (656)
..+.||++.|+|.|.+|+.+|+.|...|.+|.++|+.... +.+...+ +...+++++. .++|+|+.++|.....
T Consensus 115 ~~l~~k~vlViGaGg~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~~ 194 (271)
T 1nyt_A 115 FIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGISG 194 (271)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGGT
T ss_pred cCcCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCCC
Confidence 4578999999999999999999999999999999987522 2222322 2233444544 5899999999965321
Q ss_pred c-ccccHHHHhcCCCCcEEEEcCCCc
Q 006212 298 S-KIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 298 ~-~li~~~~l~~mK~gailINvaRg~ 322 (656)
. .-+.. ..++++.+++|+.-..
T Consensus 195 ~~~~i~~---~~l~~~~~v~D~~y~p 217 (271)
T 1nyt_A 195 DIPAIPS---SLIHPGIYCYDMFYQK 217 (271)
T ss_dssp CCCCCCG---GGCCTTCEEEESCCCS
T ss_pred CCCCCCH---HHcCCCCEEEEeccCC
Confidence 0 01222 2257788888887543
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00016 Score=65.93 Aligned_cols=65 Identities=17% Similarity=0.143 Sum_probs=48.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHHHH----hccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFDQA----LATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~el----l~~aDvV~l~~P 292 (656)
.++++.|+|+|.+|+.+|+.|...|++|+++|++. ..+.+.+.|+... +.+.+ +.++|+|++++|
T Consensus 5 ~~~~v~I~G~G~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~ 79 (141)
T 3llv_A 5 GRYEYIVIGSEAAGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS 79 (141)
T ss_dssp -CCSEEEECCSHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC
Confidence 35789999999999999999999999999999875 2334455565432 22222 468999999988
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00028 Score=76.12 Aligned_cols=87 Identities=20% Similarity=0.174 Sum_probs=60.4
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEEEC---CCC-ChhH-HHHcC------------C------e-e-cCHHHHhcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAHD---PYA-PADK-ARAVG------------V------E-L-VSFDQALAT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~~d---~~~-~~~~-a~~~g------------~------~-~-~~l~ell~~ 283 (656)
++|+|||.|.||..+|..|.. .|.+|.+|| +.. ..+. ..+.| . . . .++++.++.
T Consensus 3 mkI~ViGaG~~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (404)
T 3c7a_A 3 VKVCVCGGGNGAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISG 82 (404)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTT
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCC
Confidence 479999999999999999976 599999999 432 1122 11112 1 1 2 268888999
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
||+|++++|.. ....++ ++....++++++|++.
T Consensus 83 aD~Vilav~~~-~~~~v~-~~l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 83 ADVVILTVPAF-AHEGYF-QAMAPYVQDSALIVGL 115 (404)
T ss_dssp CSEEEECSCGG-GHHHHH-HHHTTTCCTTCEEEET
T ss_pred CCEEEEeCchH-HHHHHH-HHHHhhCCCCcEEEEc
Confidence 99999999943 333333 2233447888999985
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.00022 Score=74.42 Aligned_cols=104 Identities=15% Similarity=0.146 Sum_probs=68.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecC----------H-HHHhccCCEEEEccCCCccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVS----------F-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~----------l-~ell~~aDvV~l~~Plt~~T 297 (656)
++|+|||.|.||..+|..|. .|.+|.++++.. ..+...+.|+...+ . ++....+|+|++++|.. .+
T Consensus 3 mkI~IiGaGa~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~ 80 (307)
T 3ego_A 3 LKIGIIGGGSVGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQH-QL 80 (307)
T ss_dssp CEEEEECCSHHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCGG-GH
T ss_pred CEEEEECCCHHHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCHH-HH
Confidence 68999999999999999999 899999999875 33444555654321 0 24567899999999943 33
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
...+ +.++.+.+++ ||.+.-|= -.++.+.+.+...++.
T Consensus 81 ~~~l--~~l~~~~~~~-ivs~~nGi-~~~e~l~~~~~~~~vl 118 (307)
T 3ego_A 81 QSVF--SSLERIGKTN-ILFLQNGM-GHIHDLKDWHVGHSIY 118 (307)
T ss_dssp HHHH--HHTTSSCCCE-EEECCSSS-HHHHHHHTCCCSCEEE
T ss_pred HHHH--HHhhcCCCCe-EEEecCCc-cHHHHHHHhCCCCcEE
Confidence 3333 2333345666 78776553 2344555555544443
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00015 Score=65.49 Aligned_cols=93 Identities=16% Similarity=0.277 Sum_probs=57.4
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeec-----CHH---HH-hccCCEEEEccCCCcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV-----SFD---QA-LATADFISLHMPLNPT 296 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~-----~l~---el-l~~aDvV~l~~Plt~~ 296 (656)
+.++++.|+|+|.+|+.+++.|...|++|+++|+... .+.+.+.+.... +.+ ++ +.++|+|+.++|...+
T Consensus 4 ~~~~~v~I~G~G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~ 83 (144)
T 2hmt_A 4 IKNKQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 83 (144)
T ss_dssp --CCSEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHH
T ss_pred CcCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchH
Confidence 4578899999999999999999999999999998642 222223344321 222 22 5789999999985322
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg 321 (656)
+. +.-......+.+. .++-...+
T Consensus 84 ~~-~~~~~~~~~~~~~-~ii~~~~~ 106 (144)
T 2hmt_A 84 AS-TLTTLLLKELDIP-NIWVKAQN 106 (144)
T ss_dssp HH-HHHHHHHHHTTCS-EEEEECCS
T ss_pred HH-HHHHHHHHHcCCC-eEEEEeCC
Confidence 11 1112233445555 44444443
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00019 Score=73.59 Aligned_cols=72 Identities=14% Similarity=0.091 Sum_probs=52.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcC----CeecCHHHHhc-cCCEEEEccCCCc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----VELVSFDQALA-TADFISLHMPLNP 295 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g----~~~~~l~ell~-~aDvV~l~~Plt~ 295 (656)
+..+.||+++|+|.|.+|+++|..|...|.+|.++|++... +.+...+ +...+++++.+ ++|+|+.++|...
T Consensus 114 ~~~~~~~~vlvlGaGg~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~ 192 (272)
T 1p77_A 114 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGL 192 (272)
T ss_dssp TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCC
Confidence 34678999999999999999999999999999999987521 2222221 22335555444 8999999999553
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00043 Score=72.48 Aligned_cols=64 Identities=22% Similarity=0.390 Sum_probs=52.2
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCeecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVELVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+..++.++.. ++++. ++|+... ...+...|+.+.+++++++ ++|+|++|+|.
T Consensus 4 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~~D~V~i~tp~ 73 (331)
T 4hkt_A 4 VRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCEVRTIDAIEAAADIDAVVICTPT 73 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCEECCHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCCcCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999999999875 78887 5898752 2334556777668999998 89999999994
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0015 Score=76.25 Aligned_cols=130 Identities=19% Similarity=0.251 Sum_probs=87.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH---------------cC-------CeecCHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA---------------VG-------VELVSFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~---------------~g-------~~~~~l~ell~~aDv 286 (656)
++|||||.|.||..+|..+...|++|+.+|.... .+.+.+ .+ +...+-.+.+++||+
T Consensus 317 ~~v~ViGaG~MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aDl 396 (742)
T 3zwc_A 317 SSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKELSTVDL 396 (742)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGGGGSCSE
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHHHhhCCE
Confidence 6999999999999999999999999999998742 111110 00 012222345889999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcEEE
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENVTV 365 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nvil 365 (656)
|+=++|-..+.++-+-++.=+.++++++|-...++= ....|.++++. .++ .|++.|.+-| .-||.| ||-
T Consensus 397 VIEAV~E~l~iK~~vf~~le~~~~~~aIlASNTSsl--~i~~ia~~~~~p~r~--ig~HFfnP~~---~m~LVE---vi~ 466 (742)
T 3zwc_A 397 VVEAVFEDMNLKKKVFAELSALCKPGAFLCTNTSAL--NVDDIASSTDRPQLV--IGTHFFSPAH---VMRLLE---VIP 466 (742)
T ss_dssp EEECCCSCHHHHHHHHHHHHHHSCTTCEEEECCSSS--CHHHHHTTSSCGGGE--EEEECCSSTT---TCCEEE---EEE
T ss_pred EEEeccccHHHHHHHHHHHhhcCCCCceEEecCCcC--ChHHHHhhcCCcccc--ccccccCCCC---CCceEE---Eec
Confidence 999999777766555455555689999887655443 34456555543 344 6777775332 357775 777
Q ss_pred cCCC
Q 006212 366 TPHL 369 (656)
Q Consensus 366 TPH~ 369 (656)
+|+.
T Consensus 467 g~~T 470 (742)
T 3zwc_A 467 SRYS 470 (742)
T ss_dssp CSSC
T ss_pred CCCC
Confidence 7764
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00062 Score=70.09 Aligned_cols=95 Identities=9% Similarity=0.112 Sum_probs=66.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcC---CeecCHHHHh-ccCCEEEEccCCCcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVG---VELVSFDQAL-ATADFISLHMPLNPT 296 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g---~~~~~l~ell-~~aDvV~l~~Plt~~ 296 (656)
+.++.||++.|+|.|.+|+.++..|...|. +|.++++.... +.+.+.+ +...+++++- .++|+|+.++|..-.
T Consensus 115 ~~~l~~k~~lvlGaGg~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~ 194 (272)
T 3pwz_A 115 GEPLRNRRVLLLGAGGAVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLT 194 (272)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGG
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCC
Confidence 456889999999999999999999999996 99999987522 2233333 3444566654 789999999996432
Q ss_pred cc-ccccHHHHhcCCCCcEEEEcCCC
Q 006212 297 TS-KIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 297 T~-~li~~~~l~~mK~gailINvaRg 321 (656)
.. ..+.. +.++++.+++|+.-.
T Consensus 195 ~~~~~i~~---~~l~~~~~V~DlvY~ 217 (272)
T 3pwz_A 195 ADLPPLPA---DVLGEAALAYELAYG 217 (272)
T ss_dssp TCCCCCCG---GGGTTCSEEEESSCS
T ss_pred CCCCCCCH---HHhCcCCEEEEeecC
Confidence 11 12322 235677777777644
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00061 Score=71.73 Aligned_cols=64 Identities=27% Similarity=0.390 Sum_probs=50.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCCh--hHHHHcCCee-cCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~--~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+.+++.++.. ++++. ++|+.... ..+...|+.. .++++++. ++|+|++|+|.
T Consensus 5 ~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~ 75 (344)
T 3euw_A 5 LRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPT 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCc
Confidence 4799999999999999999876 78877 58887522 2344556654 48999998 89999999994
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00025 Score=76.53 Aligned_cols=83 Identities=20% Similarity=0.307 Sum_probs=68.9
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCC---EEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGM---NVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~---~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
..-+|.|||. |..|..-++.++++|. .|.++|.+.. ..|.. + +.+.++|+|+.|+......-.++.+
T Consensus 213 ~~~kV~ViG~~G~vG~~A~~~a~~lGa~~~~V~v~D~~~~-----~~g~~---~-~~i~~aDivIn~vlig~~aP~Lvt~ 283 (394)
T 2qrj_A 213 RKPTVLIIGALGRCGSGAIDLLHKVGIPDANILKWDIKET-----SRGGP---F-DEIPQADIFINCIYLSKPIAPFTNM 283 (394)
T ss_dssp CCCCEEEETTTSHHHHHHHHHHHHTTCCGGGEEEECHHHH-----TTCSC---C-THHHHSSEEEECCCCCSSCCCSCCH
T ss_pred CCCeEEEEcCCCHHHHHHHHHHHhCCCCcCceEEeecccc-----ccCCc---h-hhHhhCCEEEECcCcCCCCCcccCH
Confidence 4568999999 9999999999999998 8999997531 11332 2 3466999999999986666789999
Q ss_pred HHHhcC-CCCcEEEEcC
Q 006212 304 ETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~m-K~gailINva 319 (656)
+.++.| |||++|||++
T Consensus 284 e~v~~m~k~gsVIVDVA 300 (394)
T 2qrj_A 284 EKLNNPNRRLRTVVDVS 300 (394)
T ss_dssp HHHCCTTCCCCEEEETT
T ss_pred HHHhcCcCCCeEEEEEe
Confidence 999999 9999999996
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00065 Score=71.89 Aligned_cols=65 Identities=9% Similarity=0.186 Sum_probs=51.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCCh--hHHHHcCCee-cCHHHHh--ccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVEL-VSFDQAL--ATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~--~~a~~~g~~~-~~l~ell--~~aDvV~l~~Plt 294 (656)
.+|||||+|.||+..++.++.. ++++. ++|++... ..+...|+.. .++++++ .+.|+|++|+|..
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~ 77 (354)
T 3db2_A 6 VGVAAIGLGRWAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPND 77 (354)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTT
T ss_pred ceEEEEccCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChH
Confidence 4799999999999999999977 88876 57887522 2345557754 4899999 6799999999943
|
| >2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00047 Score=65.81 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=61.2
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEe
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~ 631 (656)
.|.|-+...|+||++++|+.+|+++|+||.++.+......+.+.+.+.++.. .-+.+.++|.++++|.+|.-+.
T Consensus 3 ~~~IsV~v~NrpGvLarIt~lfs~rg~NI~Sl~v~~t~d~~~sriti~V~~d~~~leqI~kqL~Kl~dV~~V~r~~ 78 (164)
T 2f1f_A 3 RRILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVSELG 78 (164)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred EEEEEEEEeCCCcHHHHHHHHHHHCCCCeeeceeeecCCCCEEEEEEEEeccHHHHHHHHHHHcCCCCEEEEEEcC
Confidence 3677788899999999999999999999999999876555678787777643 2347888999999999987665
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00063 Score=71.19 Aligned_cols=101 Identities=16% Similarity=0.216 Sum_probs=64.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHH--H-------c--C--Cee-cCHHHHhccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKAR--A-------V--G--VEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~--~-------~--g--~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.++|+|||.|.||..+|..+...|+ +|..||+........ + . . +.. .++ +.+++||+|+++++.
T Consensus 4 ~~kI~VIGaG~~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~ 82 (317)
T 2ewd_A 4 RRKIAVIGSGQIGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASI 82 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCC
Confidence 4689999999999999999987787 999999875321110 0 0 1 222 356 678999999999952
Q ss_pred Cccccccc-------c----H---HHHhcCCCCcEEEEcCCCchhcHHHHHH
Q 006212 294 NPTTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVIDEEALVR 331 (656)
Q Consensus 294 t~~T~~li-------~----~---~~l~~mK~gailINvaRg~ivde~aL~~ 331 (656)
+...++- + . +.+....|++++++++-..-+....+.+
T Consensus 83 -p~~~g~~r~d~~~~~~~i~~~i~~~i~~~~~~~iii~~sNp~~~~~~~~~~ 133 (317)
T 2ewd_A 83 -PGRPKDDRSELLFGNARILDSVAEGVKKYCPNAFVICITNPLDVMVSHFQK 133 (317)
T ss_dssp -SSCCSSCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHH
T ss_pred -CCCCCCcHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHH
Confidence 2211110 0 1 1122235689999988644333444444
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0011 Score=69.02 Aligned_cols=79 Identities=16% Similarity=0.237 Sum_probs=65.3
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+++|..|...|..|..+..+. .+|.+.+++||+|+.++.. .+++
T Consensus 173 ~~i~l~Gk~vvViGRS~iVGkPla~LL~~~~ATVTi~Hs~T------------~dl~~~~~~ADIvV~A~G~----p~~i 236 (303)
T 4b4u_A 173 NNIEIAGKHAVVVGRSAILGKPMAMMLLQANATVTICHSRT------------QNLPELVKQADIIVGAVGK----AELI 236 (303)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTC------------SSHHHHHHTCSEEEECSCS----TTCB
T ss_pred HCCCCCCCEEEEEeccccccchHHHHHHhcCCEEEEecCCC------------CCHHHHhhcCCeEEeccCC----CCcc
Confidence 46789999999999886 59999999999999999876542 2588889999999998862 3466
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. .|+|+++||+|-
T Consensus 237 ~~d~---vk~GavVIDVGi 252 (303)
T 4b4u_A 237 QKDW---IKQGAVVVDAGF 252 (303)
T ss_dssp CGGG---SCTTCEEEECCC
T ss_pred cccc---ccCCCEEEEece
Confidence 6654 599999999983
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0012 Score=68.36 Aligned_cols=93 Identities=17% Similarity=0.182 Sum_probs=61.8
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHHHHcCCeecCHHHH--hccCCEEEEccCCC--cccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKARAVGVELVSFDQA--LATADFISLHMPLN--PTTS 298 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a~~~g~~~~~l~el--l~~aDvV~l~~Plt--~~T~ 298 (656)
+.++.||++.|+|.|.+|++++..|...|. +|.+++|...........+...+++++ + ++|+|+.++|.. +...
T Consensus 117 ~~~~~~k~vlvlGaGGaaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~l-~~DivInaTp~Gm~~~~~ 195 (282)
T 3fbt_A 117 RVEIKNNICVVLGSGGAARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSNL-KGDVIINCTPKGMYPKEG 195 (282)
T ss_dssp TCCCTTSEEEEECSSTTHHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTTC-CCSEEEECSSTTSTTSTT
T ss_pred CCCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHhc-cCCEEEECCccCccCCCc
Confidence 456889999999999999999999999998 999999874222122222323333333 4 899999999963 2111
Q ss_pred -ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 -KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 -~li~~~~l~~mK~gailINvaR 320 (656)
-.+..+. ++++.+++|+.-
T Consensus 196 ~~pi~~~~---l~~~~~v~DlvY 215 (282)
T 3fbt_A 196 ESPVDKEV---VAKFSSAVDLIY 215 (282)
T ss_dssp CCSSCHHH---HTTCSEEEESCC
T ss_pred cCCCCHHH---cCCCCEEEEEee
Confidence 1233333 456677777653
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0028 Score=68.21 Aligned_cols=94 Identities=24% Similarity=0.264 Sum_probs=74.9
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCC----CCh----------hHHHHcCC--eecCHHHHhccCC
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPY----APA----------DKARAVGV--ELVSFDQALATAD 285 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~----~~~----------~~a~~~g~--~~~~l~ell~~aD 285 (656)
.|..+.+.+|.|+|.|..|..+|+.+.+.|. +|+.+|+. ... ..+..... ...+|.+.++.+|
T Consensus 186 ~g~~l~~~kVVv~GAGaAG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~AD 265 (388)
T 1vl6_A 186 TEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGAD 265 (388)
T ss_dssp HTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCS
T ss_pred hCCCCCCcEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCC
Confidence 3568899999999999999999999999998 89999987 211 11222121 1347999999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
+++-+.- -+++.++.++.|+++++|+++++-
T Consensus 266 VlIG~Sa-----p~l~t~emVk~Ma~~pIIfalSNP 296 (388)
T 1vl6_A 266 FFIGVSR-----GNILKPEWIKKMSRKPVIFALANP 296 (388)
T ss_dssp EEEECSC-----SSCSCHHHHTTSCSSCEEEECCSS
T ss_pred EEEEeCC-----CCccCHHHHHhcCCCCEEEEcCCC
Confidence 9987642 388999999999999999999963
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00075 Score=70.32 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=47.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCC-hh-HHHHc---------CCee--cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAP-AD-KARAV---------GVEL--VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~-~~-~a~~~---------g~~~--~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||.|.||..+|..|...| .+|..||+... .+ .+.+. .+.. .++ +.+++||+|++++|.
T Consensus 2 ~kI~VIGaG~~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~ 79 (309)
T 1hyh_A 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGN 79 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCC
Confidence 58999999999999999998777 69999998742 11 11111 1232 356 678999999999995
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00059 Score=74.90 Aligned_cols=94 Identities=19% Similarity=0.181 Sum_probs=63.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH--------------------HHcC-Cee-cCHHHHhccCCE
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--------------------RAVG-VEL-VSFDQALATADF 286 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a--------------------~~~g-~~~-~~l~ell~~aDv 286 (656)
-++|+|||+|.+|..+|..+...|++|+++|.+...-.. .+.| ..+ .+.++.+++||+
T Consensus 21 m~~IaViGlGYVGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~ 100 (444)
T 3vtf_A 21 MASLSVLGLGYVGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDA 100 (444)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSE
T ss_pred CCEEEEEccCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCc
Confidence 368999999999999999999899999999975321111 1112 223 368888999999
Q ss_pred EEEccCCCccccc-------ccc--HHHHhcCC---CCcEEEEcCCCch
Q 006212 287 ISLHMPLNPTTSK-------IFN--DETFAKMK---KGVRIVNVARGGV 323 (656)
Q Consensus 287 V~l~~Plt~~T~~-------li~--~~~l~~mK---~gailINvaRg~i 323 (656)
+++|+| ||.... +.. +..-..|+ ++.++|.-+.-.+
T Consensus 101 ~~I~Vp-TP~~~d~~~Dl~~v~~a~~~I~~~l~~~~~g~lVV~eSTVpp 148 (444)
T 3vtf_A 101 TFIAVG-TPPAPDGSADLRYVEAAARAVGRGIRAKGRWHLVVVKSTVPP 148 (444)
T ss_dssp EEECCC-CCBCTTSSBCCHHHHHHHHHHHHHHHHHCSCCEEEECSCCCT
T ss_pred eEEEec-CCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCeEEEEeCCCCC
Confidence 999999 543221 111 11222343 6789999887444
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.05 E-value=0.0015 Score=68.51 Aligned_cols=64 Identities=19% Similarity=0.192 Sum_probs=46.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCC-hhH-HHH--c------CC--eecCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADK-ARA--V------GV--ELVSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~-~~~-a~~--~------g~--~~~~l~ell~~aDvV~l~~Plt 294 (656)
++|+|||.|.||..+|..|...|+ +|..+|+... .+. ... . .. ...+ .+.+++||+|++++|..
T Consensus 1 mkI~VIGaG~~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~ 78 (319)
T 1a5z_A 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVP 78 (319)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCC
Confidence 479999999999999999988788 9999998742 111 111 1 11 1224 35678999999999953
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00097 Score=69.95 Aligned_cols=65 Identities=11% Similarity=0.093 Sum_probs=51.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Plt 294 (656)
.+|||||+|.||+.+++.++.. +++|. ++|++.. ...+...|+. +.++++++. ++|+|++|+|..
T Consensus 6 ~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~ 78 (330)
T 3e9m_A 6 IRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQ 78 (330)
T ss_dssp EEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGG
T ss_pred EEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCH
Confidence 4899999999999999999875 78877 5788763 2334556763 458999997 899999999943
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00072 Score=69.74 Aligned_cols=94 Identities=16% Similarity=0.226 Sum_probs=65.2
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcC----------CeecCHHHHhccCCEEEEccC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----------VELVSFDQALATADFISLHMP 292 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g----------~~~~~l~ell~~aDvV~l~~P 292 (656)
.++.||++.|+|.|.||+++|+.|...| +|.++|+.... +.+.+.+ +...++.+.+.++|+|+.++|
T Consensus 124 ~~l~~k~vlV~GaGgiG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~~~~DilVn~ag 202 (287)
T 1nvt_A 124 GRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATP 202 (287)
T ss_dssp CCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSC
T ss_pred CCcCCCEEEEECchHHHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEEeeHHHhhCCCCEEEECCC
Confidence 4678999999999999999999999999 99999987421 1111111 122244566788999999999
Q ss_pred CCcccc---ccccHHHHhcCCCCcEEEEcCCC
Q 006212 293 LNPTTS---KIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 293 lt~~T~---~li~~~~l~~mK~gailINvaRg 321 (656)
...... ..+. ....++++.+++|+.-.
T Consensus 203 ~~~~~~~~~~~~~--~~~~l~~~~~v~Dv~y~ 232 (287)
T 1nvt_A 203 IGMYPNIDVEPIV--KAEKLREDMVVMDLIYN 232 (287)
T ss_dssp TTCTTCCSSCCSS--CSTTCCSSSEEEECCCS
T ss_pred CCCCCCCCCCCCC--CHHHcCCCCEEEEeeeC
Confidence 653210 0120 13457889999999754
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00082 Score=69.55 Aligned_cols=93 Identities=18% Similarity=0.188 Sum_probs=64.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHc-----CC--eec---CHHHHhccCCEEEEcc
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAV-----GV--ELV---SFDQALATADFISLHM 291 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~-----g~--~~~---~l~ell~~aDvV~l~~ 291 (656)
..+.||++.|+|.|.+|+.++..|...|. +|.++++.... +.+.+. ++ ... ++++.++++|+|+.++
T Consensus 123 ~~l~~k~vlVlGaGG~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaT 202 (283)
T 3jyo_A 123 PNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNAT 202 (283)
T ss_dssp TTCCCSEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECS
T ss_pred cCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECC
Confidence 46789999999999999999999999998 79999987522 122221 11 122 6778889999999999
Q ss_pred CCCcccc--ccccHHHHhcCCCCcEEEEcCC
Q 006212 292 PLNPTTS--KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 292 Plt~~T~--~li~~~~l~~mK~gailINvaR 320 (656)
|..-... -.+. ...++++.+++|+.-
T Consensus 203 p~Gm~~~~~~pi~---~~~l~~~~~v~DlvY 230 (283)
T 3jyo_A 203 PMGMPAHPGTAFD---VSCLTKDHWVGDVVY 230 (283)
T ss_dssp STTSTTSCSCSSC---GGGCCTTCEEEECCC
T ss_pred CCCCCCCCCCCCC---HHHhCCCCEEEEecC
Confidence 9542111 1122 233566777777653
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0014 Score=68.95 Aligned_cols=96 Identities=11% Similarity=0.222 Sum_probs=65.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC-hhHHHH--------cCC--eec---C---HHHHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARA--------VGV--ELV---S---FDQALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~-~~~a~~--------~g~--~~~---~---l~ell~~aD 285 (656)
+.++.||++.|+|.|.+|++++..|...|. +|.++++... .+.+.+ .+. ... + +.+.+.++|
T Consensus 149 ~~~l~gk~~lVlGaGG~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aD 228 (315)
T 3tnl_A 149 GHDIIGKKMTICGAGGAATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESV 228 (315)
T ss_dssp TCCCTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCccCCEEEEECCChHHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCC
Confidence 457899999999999999999999999998 8999998732 222221 122 222 2 456678999
Q ss_pred EEEEccCCCcc--c-cccccHHHHhcCCCCcEEEEcCCC
Q 006212 286 FISLHMPLNPT--T-SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 286 vV~l~~Plt~~--T-~~li~~~~l~~mK~gailINvaRg 321 (656)
+|+.++|..-. . ...+. ....++++.+++|+.-.
T Consensus 229 iIINaTp~Gm~~~~~~~p~~--~~~~l~~~~~V~DlvY~ 265 (315)
T 3tnl_A 229 IFTNATGVGMKPFEGETLLP--SADMLRPELIVSDVVYK 265 (315)
T ss_dssp EEEECSSTTSTTSTTCCSCC--CGGGCCTTCEEEESCCS
T ss_pred EEEECccCCCCCCCCCCCCC--cHHHcCCCCEEEEeccC
Confidence 99999995421 1 11121 12336777788887643
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0027 Score=66.23 Aligned_cols=88 Identities=20% Similarity=0.274 Sum_probs=58.4
Q ss_pred CEEEEEecChhHHHHHHHHhc--CCCEEEEECCCCChhHHH----Hc-------C--Cee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKG--LGMNVIAHDPYAPADKAR----AV-------G--VEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~----~~-------g--~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|||.|.+|..+|..+.. +|.+|..+|+........ .. . +.. .++++ +++||+|++++|
T Consensus 1 mkI~VIGaG~vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~- 78 (310)
T 1guz_A 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAG- 78 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCS-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCC-
Confidence 379999999999999999885 589999999876322111 11 1 122 35666 899999999998
Q ss_pred Cccccccc-------cH-------HHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIF-------ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li-------~~-------~~l~~mK~gailINva 319 (656)
++...+.. |. +.+....|++++++++
T Consensus 79 ~p~~~g~~r~dl~~~n~~i~~~i~~~i~~~~~~~~viv~t 118 (310)
T 1guz_A 79 LPRKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVS 118 (310)
T ss_dssp CCCCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEEc
Confidence 34333221 11 1122235788888884
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0017 Score=67.57 Aligned_cols=102 Identities=18% Similarity=0.178 Sum_probs=65.7
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEE-EECCCCC-h-hHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAP-A-DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi-~~d~~~~-~-~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
.+|||||+|.||+. +++.++.. ++++. ++|+... . ..+...|+.. .+++++..++|+|++|+|... . -+
T Consensus 6 ~~vgiiG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~--h---~~ 80 (319)
T 1tlt_A 6 LRIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTAS--H---FD 80 (319)
T ss_dssp EEEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTH--H---HH
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchh--H---HH
Confidence 47999999999997 88888764 78876 7898763 2 2344557653 378777678999999999332 1 12
Q ss_pred HHHhcCCCCc-EEEEc-CCCchhcHHHHHHhHhcC
Q 006212 304 ETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSG 336 (656)
Q Consensus 304 ~~l~~mK~ga-ilINv-aRg~ivde~aL~~aL~~g 336 (656)
.....++.|. +++.- .-..+-+.+.|.++.++.
T Consensus 81 ~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~~ 115 (319)
T 1tlt_A 81 VVSTLLNAGVHVCVDKPLAENLRDAERLVELAARK 115 (319)
T ss_dssp HHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHHc
Confidence 2223355564 55542 222334455677666553
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0008 Score=71.18 Aligned_cols=63 Identities=21% Similarity=0.284 Sum_probs=50.7
Q ss_pred CEEEEEecChhHHHHHHHHhcC--CCEEE-EECCCCC--hhHHHHcCCee-cCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--GMNVI-AHDPYAP--ADKARAVGVEL-VSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--G~~Vi-~~d~~~~--~~~a~~~g~~~-~~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+|.||+..++.++.. ++++. ++|++.. ...+.+.|+.. .+++++++ ++|+|++|+|
T Consensus 14 ~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 84 (354)
T 3q2i_A 14 IRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTP 84 (354)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSC
T ss_pred ceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCC
Confidence 4799999999999999999876 78876 6788752 22345567754 48999997 7999999999
|
| >2i6u_A Otcase, ornithine carbamoyltransferase; X-RAY crystallography, ornithine carbamyoltransferase, carbamoyl phosphate, L- norvaline; 2.20A {Mycobacterium tuberculosis} PDB: 2p2g_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.018 Score=60.24 Aligned_cols=125 Identities=19% Similarity=0.185 Sum_probs=85.5
Q ss_pred hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHhcC
Q 006212 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAKGL 251 (656)
Q Consensus 174 ~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk~~ 251 (656)
-.+|+|.|+-+....++ .+++=++.+.++ .| .+.|.+|++||=| ++..+++..+..+
T Consensus 114 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~ 172 (307)
T 2i6u_A 114 VATVPVINALSDEFHPC--QVLADLQTIAER------------------KG-ALRGLRLSYFGDGANNMAHSLLLGGVTA 172 (307)
T ss_dssp HCSSCEEESCCSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHHHHT
T ss_pred hCCCCEEcCCCCCcCcc--HHHHHHHHHHHH------------------hC-CcCCeEEEEECCCCcCcHHHHHHHHHHC
Confidence 34688999766544443 233333333321 12 4789999999996 9999999999999
Q ss_pred CCEEEEECCCC--Chh-H---H----HHcCC--e-ecCHHHHhccCCEEEEccCC-------Ccc-----ccccccHHHH
Q 006212 252 GMNVIAHDPYA--PAD-K---A----RAVGV--E-LVSFDQALATADFISLHMPL-------NPT-----TSKIFNDETF 306 (656)
Q Consensus 252 G~~Vi~~d~~~--~~~-~---a----~~~g~--~-~~~l~ell~~aDvV~l~~Pl-------t~~-----T~~li~~~~l 306 (656)
|++|....|.. +.. . + ++.|. . ..++++.+++||+|..-.=. .++ ...-++.+.+
T Consensus 173 g~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~~~w~smg~~~~~~~~~~~~~~y~v~~~~l 252 (307)
T 2i6u_A 173 GIHVTVAAPEGFLPDPSVRAAAERRAQDTGASVTVTADAHAAAAGADVLVTDTWTSMGQENDGLDRVKPFRPFQLNSRLL 252 (307)
T ss_dssp TCEEEEECCTTSCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCTTSCCCSSGGGGGGCBCHHHH
T ss_pred CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhcCCCEEEecceecCCcccchHHHHHHHhhcCCCHHHH
Confidence 99999988753 221 1 2 25564 3 34899999999999983320 011 1245688888
Q ss_pred hcCCCCcEEEEcC
Q 006212 307 AKMKKGVRIVNVA 319 (656)
Q Consensus 307 ~~mK~gailINva 319 (656)
+.+||+++|.-|.
T Consensus 253 ~~a~~~ai~mH~l 265 (307)
T 2i6u_A 253 ALADSDAIVLHCL 265 (307)
T ss_dssp HHSCTTCEEEECS
T ss_pred hhcCCCcEEECCC
Confidence 8899999999986
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0011 Score=61.47 Aligned_cols=90 Identities=12% Similarity=0.105 Sum_probs=57.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHH---HHcCCeec-----C---HHHH-hccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKA---RAVGVELV-----S---FDQA-LATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a---~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl 293 (656)
..+++.|+|+|.+|+.+++.|...|.+|.+.|+.... +.. ...|+..+ + ++++ +.++|+|+++++.
T Consensus 2 ~~~~vlI~G~G~vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~ 81 (153)
T 1id1_A 2 RKDHFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CCSCEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCC
Confidence 3567999999999999999999999999999986311 111 12344332 2 4444 7899999999984
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINva 319 (656)
... .+.-......+.+...++...
T Consensus 82 d~~--n~~~~~~a~~~~~~~~ii~~~ 105 (153)
T 1id1_A 82 DAD--NAFVVLSAKDMSSDVKTVLAV 105 (153)
T ss_dssp HHH--HHHHHHHHHHHTSSSCEEEEC
T ss_pred hHH--HHHHHHHHHHHCCCCEEEEEE
Confidence 432 222233344453444444433
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0014 Score=68.30 Aligned_cols=102 Identities=12% Similarity=0.169 Sum_probs=63.0
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEEECCCCCh--hHHHHcCCe--ecCHHHHh-ccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIAHDPYAPA--DKARAVGVE--LVSFDQAL-ATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~~d~~~~~--~~a~~~g~~--~~~l~ell-~~aDvV~l~~Plt~~T~~li~ 302 (656)
.+|||||+|.||+. +++.++.. ++++.++|+.... ..+.+.|+. +.+..+++ .++|+|++|+|.. ...
T Consensus 3 ~~igiIG~G~ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~--~h~--- 77 (323)
T 1xea_A 3 LKIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHS--- 77 (323)
T ss_dssp EEEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHH---
T ss_pred cEEEEECCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCch--hHH---
Confidence 37999999999994 99988765 7888899987522 234556765 44555666 7899999999932 211
Q ss_pred HHHHhcCCCCc-EEEEc-CCCchhcHHHHHHhHhcC
Q 006212 303 DETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSG 336 (656)
Q Consensus 303 ~~~l~~mK~ga-ilINv-aRg~ivde~aL~~aL~~g 336 (656)
+.....++.|. +++.- .--.+-+.+.|.++.++.
T Consensus 78 ~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~~ 113 (323)
T 1xea_A 78 TLAAFFLHLGIPTFVDKPLAASAQECENLYELAEKH 113 (323)
T ss_dssp HHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHhc
Confidence 11222344553 55542 112233445566655543
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0015 Score=68.21 Aligned_cols=63 Identities=14% Similarity=0.204 Sum_probs=48.4
Q ss_pred EEEEEecChhHHHH-HHHHhcCCCEEE-EECCCCCh--hHHHHcCCe--ecCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEV-ARRAKGLGMNVI-AHDPYAPA--DKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~v-A~~lk~~G~~Vi-~~d~~~~~--~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 293 (656)
+|||||+|.||+.+ ++.++..+++++ ++|++... ..+.+.|+. +.+++++++ ++|+|++++|.
T Consensus 2 ~vgiiG~G~~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~ 72 (332)
T 2glx_A 2 RWGLIGASTIAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTN 72 (332)
T ss_dssp EEEEESCCHHHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEcccHHHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 79999999999998 777766778876 57887522 234455763 348999987 59999999993
|
| >2pc6_A Probable acetolactate synthase isozyme III (small; regulatory subunit, structural genomi protein structure initiative; HET: MSE; 2.50A {Nitrosomonas europaea atcc 19718} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00071 Score=64.59 Aligned_cols=73 Identities=15% Similarity=0.202 Sum_probs=60.4
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC--CCHHHHHHHhcCCCccEEEEEe
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE--PNQDSLKEIGKVPAIEEYTLLH 631 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~--~~~e~l~~L~~~~~V~~v~~v~ 631 (656)
|.|-+...|+||++++|+.++.++|+||..+.+......+.+-+.+.++.. .-+.+.++|.++.+|.+|..+.
T Consensus 5 ~~IsV~veNrpGvL~rI~~lfs~rg~NI~Sl~v~~t~d~g~sritivV~~d~~~leql~kQL~Kl~dV~~V~~~~ 79 (165)
T 2pc6_A 5 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLIDLS 79 (165)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEEEGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHCCCcEEEEEEEecCCCCEEEEEEEEeccHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 678888899999999999999999999999999876656677776666533 3347888999999999887664
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0011 Score=68.57 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=50.8
Q ss_pred CCEEEEEecChhHHH-HHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCe-ecCHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAP--ADKARAVGVE-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~~-vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~-~~~l~ell~~aDvV~l~~P 292 (656)
-.++||||+|.||+. +++.++.. ++++. ++|+... ...+.+.|+. +.++++++.++|+|++|+|
T Consensus 6 ~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp 75 (308)
T 3uuw_A 6 NIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSS 75 (308)
T ss_dssp CCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCC
T ss_pred cCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCC
Confidence 368999999999997 88888864 78887 5898752 2234456765 4589999999999999999
|
| >1pg5_A Aspartate carbamoyltransferase; 2.60A {Sulfolobus acidocaldarius} SCOP: c.78.1.1 c.78.1.1 PDB: 2be9_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0074 Score=62.87 Aligned_cols=94 Identities=15% Similarity=0.102 Sum_probs=71.0
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcC-CCEEEEECCCC---ChhHHHHcCCee---cCHHHHhccCCEEEEccCCCc
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA---PADKARAVGVEL---VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~-G~~Vi~~d~~~---~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+.|++|++||= |++..+++..+..+ |++|....|.. +...+.+.|..+ .++++.+++||+|..-.=-.+
T Consensus 146 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q~e 225 (299)
T 1pg5_A 146 TIDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKE 225 (299)
T ss_dssp CSTTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCST
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCchhcCCHHHHHHcCCeEEEeCCHHHHhcCCCEEEeCCcccc
Confidence 478999999998 59999999999999 99999998853 223234556542 489999999999987654221
Q ss_pred cc-----------cccccHHHHhcCCCCcEEEEcC
Q 006212 296 TT-----------SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T-----------~~li~~~~l~~mK~gailINva 319 (656)
.. ..-++.+.++.+||++++.-|.
T Consensus 226 r~~~~~~~~~~~~~y~v~~~~l~~a~~~ai~mH~l 260 (299)
T 1pg5_A 226 RFVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 260 (299)
T ss_dssp TSSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred cccCHHHHHHhhcCcccCHHHHHhcCCCCEEECCC
Confidence 10 2446778888888888888886
|
| >2ef0_A Ornithine carbamoyltransferase; TTHA1199, thermus thermophil structural genomics, NPPSFA; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.014 Score=60.82 Aligned_cols=94 Identities=15% Similarity=0.097 Sum_probs=70.8
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hhHHHHcCCee-cCHHHHhccCCEEEEccCCC------
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADKARAVGVEL-VSFDQALATADFISLHMPLN------ 294 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt------ 294 (656)
.+.|.+|+++|= +++..+++..+..+|++|....|.. + .+.....++.. .++++.+++||+|..-.=..
T Consensus 151 ~l~gl~ia~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~d~~eav~~aDvvy~~~~~smg~~~~ 230 (301)
T 2ef0_A 151 GLAGLEVAWVGDGNNVLNSLLEVAPLAGLKVRVATPKGYEPDPGLLKRANAFFTHDPKEAALGAHALYTDVWTSMGQEAE 230 (301)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHTCEEESCHHHHHTTCSEEEECCCC-------
T ss_pred CcCCcEEEEECCCchhHHHHHHHHHHcCCEEEEECCchhcCCHHHHhhceeEEECCHHHHhcCCCEEEecCcccCCcccc
Confidence 478999999997 8999999999999999999998853 2 22222223553 48999999999998833200
Q ss_pred cc------ccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PT------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~------T~~li~~~~l~~mK~gailINva 319 (656)
.. ...-++.+.++.+||++++.-|.
T Consensus 231 ~~~~~~~~~~y~v~~e~l~~a~~~ai~mHpl 261 (301)
T 2ef0_A 231 REKRLRDFQGFQVNGELLKLLRPEGVFLHCL 261 (301)
T ss_dssp -CHHHHHTTTCCBCHHHHTTSCTTCEEEECS
T ss_pred hhHHHHHhhccccCHHHHHhcCCCcEEECCC
Confidence 11 12456888899899999999997
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0017 Score=68.72 Aligned_cols=66 Identities=12% Similarity=0.081 Sum_probs=51.0
Q ss_pred CCCEEEEEecChhHH-HHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCee-cCHHHHhc--cCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~-~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
.-.+|||||+|.||+ .+++.++.. +++|. ++|+... ...+.+.|+.. .+++++++ +.|+|++|+|.
T Consensus 26 ~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~ 99 (350)
T 3rc1_A 26 NPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPA 99 (350)
T ss_dssp CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCG
T ss_pred CceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCc
Confidence 345899999999998 789988876 78876 5787642 23345567754 48999997 58999999993
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=69.39 Aligned_cols=64 Identities=17% Similarity=0.259 Sum_probs=50.7
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+..++.++.. ++++. ++|+... ...+...|+. +.+++++++ ++|+|++|+|.
T Consensus 3 ~rvgiIG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 74 (344)
T 3ezy_A 3 LRIGVIGLGRIGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSST 74 (344)
T ss_dssp EEEEEECCSHHHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCG
T ss_pred eEEEEEcCCHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCC
Confidence 3799999999999999999875 78877 4788752 2334556763 458999998 89999999993
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0012 Score=70.14 Aligned_cols=64 Identities=25% Similarity=0.401 Sum_probs=51.0
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCC-hhHHHHcCCee-cCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAP-ADKARAVGVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~-~~~a~~~g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+..++.++.. +++|.+ +|+... .+.+...|+.. .++++++. +.|+|++|+|.
T Consensus 6 ~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~ 75 (359)
T 3e18_A 6 YQLVIVGYGGMGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPN 75 (359)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCG
T ss_pred CcEEEECcCHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999999999999876 788875 688752 23445567754 48999997 79999999993
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00017 Score=74.65 Aligned_cols=91 Identities=14% Similarity=0.099 Sum_probs=62.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCC---ee-cCHHHHh-ccCCEEEEccCCCccccccccH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV---EL-VSFDQAL-ATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~---~~-~~l~ell-~~aDvV~l~~Plt~~T~~li~~ 303 (656)
++|+|||.|.||..+|..|...|.+|.++++... .+.....|. .. .+..+.+ ..+|+|++++|.. .+...+.
T Consensus 3 mkI~iiGaGa~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~~-~~~~~l~- 80 (294)
T 3g17_A 3 LSVAIIGPGAVGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKTH-QLDAVIP- 80 (294)
T ss_dssp CCEEEECCSHHHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCGG-GHHHHGG-
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCcc-CHHHHHH-
Confidence 5799999999999999999988889999988742 111112232 11 1334444 8899999999943 4444442
Q ss_pred HHHhcCCCCcEEEEcCCCc
Q 006212 304 ETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ 322 (656)
..-..++++++||.+.-|=
T Consensus 81 ~l~~~l~~~~~iv~~~nGi 99 (294)
T 3g17_A 81 HLTYLAHEDTLIILAQNGY 99 (294)
T ss_dssp GHHHHEEEEEEEEECCSSC
T ss_pred HHHHhhCCCCEEEEeccCc
Confidence 2233467888999988763
|
| >1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0018 Score=54.65 Aligned_cols=63 Identities=19% Similarity=0.159 Sum_probs=48.7
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEe--CCCCC-HHHHHHHhcCCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGV--DEEPN-QDSLKEIGKVPA 623 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~--D~~~~-~e~l~~L~~~~~ 623 (656)
..|.+..+|+||+++.|+++|+++|+||.+++..+.. +...+.+.+ ++... +++.++|+++..
T Consensus 6 ~~l~v~~~DrpGila~vt~~la~~~~NI~~i~~~~~~--~~~~~~i~v~~~~~~~l~~l~~~L~~~~~ 71 (91)
T 1zpv_A 6 AIITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLD--EYFTMMAVVSSDEKQDFTYLRNEFEAFGQ 71 (91)
T ss_dssp EEEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEET--TEEEEEEEEEESSCCCHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHHcCCCEEEEEeEEEc--CEEEEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4567789999999999999999999999999998765 566666555 43223 477788877643
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0021 Score=67.25 Aligned_cols=64 Identities=14% Similarity=0.078 Sum_probs=48.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 293 (656)
.++||||+|.||+.+++.++.. ++++. ++|++.. ...+.+.|+. +.++++++. +.|+|++|+|.
T Consensus 6 ~rigiiG~G~ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (329)
T 3evn_A 6 VRYGVVSTAKVAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATIN 77 (329)
T ss_dssp EEEEEEBCCTTHHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCG
T ss_pred eEEEEEechHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence 4799999999999999998855 56766 4687752 2334555663 458999998 89999999993
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0026 Score=66.72 Aligned_cols=64 Identities=20% Similarity=0.368 Sum_probs=49.1
Q ss_pred CEEEEEecChhHHHHHHHHh-cC-CCEEE-EECCCCCh--hHHHHcCC-e-ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GL-GMNVI-AHDPYAPA--DKARAVGV-E-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~-G~~Vi-~~d~~~~~--~~a~~~g~-~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+..++.++ .. +++++ ++|+.... ..+...|+ . +.++++++. ++|+|++|+|.
T Consensus 9 ~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~ 81 (346)
T 3cea_A 9 LRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPT 81 (346)
T ss_dssp EEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCG
T ss_pred ceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999999999988 54 78865 57887522 22344576 3 348999987 69999999993
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0022 Score=59.50 Aligned_cols=99 Identities=13% Similarity=0.113 Sum_probs=68.4
Q ss_pred CCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
-++|+|||. |++|..+++.++..|++|+..+|... + -.|+... +++++....|++++++|. +....++.
T Consensus 22 p~~iaVVGas~~~g~~G~~~~~~l~~~G~~v~~Vnp~~~-~---i~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~- 95 (144)
T 2d59_A 22 YKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE-E---VLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE- 95 (144)
T ss_dssp CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS-E---ETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH-
T ss_pred CCEEEEEccCCCCCchHHHHHHHHHHCCCEEEEECCCCC-e---ECCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHH-
Confidence 579999999 79999999999999999888887641 1 1466554 799988899999999994 44445553
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..+ .....+++..+ . .++++.+..++..+
T Consensus 96 ~~~~-~gi~~i~~~~g--~--~~~~l~~~a~~~Gi 125 (144)
T 2d59_A 96 QAIK-KGAKVVWFQYN--T--YNREASKKADEAGL 125 (144)
T ss_dssp HHHH-HTCSEEEECTT--C--CCHHHHHHHHHTTC
T ss_pred HHHH-cCCCEEEECCC--c--hHHHHHHHHHHcCC
Confidence 3333 33345655533 2 25566666665433
|
| >1vlv_A Otcase, ornithine carbamoyltransferase; TM1097, structural genomics, protein structure initiative, PSI, joint center for structu genomics; 2.25A {Thermotoga maritima} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.021 Score=60.04 Aligned_cols=125 Identities=20% Similarity=0.243 Sum_probs=84.8
Q ss_pred hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHhcC
Q 006212 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAKGL 251 (656)
Q Consensus 174 ~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk~~ 251 (656)
-.+|+|.|+-+....++ .+++=++.+.++ .| .+.|++|+++|=| ++..+++..+..+
T Consensus 133 ~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~~~ 191 (325)
T 1vlv_A 133 YSGVPVYNGLTDEFHPT--QALADLMTIEEN------------------FG-RLKGVKVVFMGDTRNNVATSLMIACAKM 191 (325)
T ss_dssp HHCSCEEESCCSSCCHH--HHHHHHHHHHHH------------------HS-CSTTCEEEEESCTTSHHHHHHHHHHHHT
T ss_pred hCCCCEEeCCCCCCCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCCCcCcHHHHHHHHHHC
Confidence 34688999766544443 233333333321 12 4789999999996 9999999999999
Q ss_pred CCEEEEECCCC---ChhH---H----HHcCCe---ecCHHHHhccCCEEEEccCC-------Ccc-----ccccccHHHH
Q 006212 252 GMNVIAHDPYA---PADK---A----RAVGVE---LVSFDQALATADFISLHMPL-------NPT-----TSKIFNDETF 306 (656)
Q Consensus 252 G~~Vi~~d~~~---~~~~---a----~~~g~~---~~~l~ell~~aDvV~l~~Pl-------t~~-----T~~li~~~~l 306 (656)
|++|....|.. +.+. + ++.|.. ..++++.+++||+|..-.=. .++ ...-++.+.+
T Consensus 192 G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvyt~~w~smg~~~~~~~~~~~~~~y~v~~ell 271 (325)
T 1vlv_A 192 GMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDVWASMGEEDKEKERMALLKPYQVNERVM 271 (325)
T ss_dssp TCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECCCC----------CHHHHGGGCBCHHHH
T ss_pred CCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEcCHHHHHccCCEEEeccccccccccchHhHHHHHhhcCCCHHHH
Confidence 99999988753 2211 2 255643 24899999999999883321 011 1245688888
Q ss_pred hcC-CCCcEEEEcC
Q 006212 307 AKM-KKGVRIVNVA 319 (656)
Q Consensus 307 ~~m-K~gailINva 319 (656)
+.+ ||+++|.-|.
T Consensus 272 ~~a~k~dai~mH~L 285 (325)
T 1vlv_A 272 EMTGKSETIFMHCL 285 (325)
T ss_dssp HTTCCTTCEEEECS
T ss_pred HhccCCCeEEECCC
Confidence 888 9999999986
|
| >2a9f_A Putative malic enzyme ((S)-malate:NAD+ oxidoreductase (decarboxylating)); hypothetical protein, structural genomics, PSI; 2.50A {Streptococcus pyogenes} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0028 Score=68.29 Aligned_cols=96 Identities=22% Similarity=0.235 Sum_probs=74.8
Q ss_pred ccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC--Ch-----------hHHHHcCC--eecCHHHHhccCC
Q 006212 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PA-----------DKARAVGV--ELVSFDQALATAD 285 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~--~~-----------~~a~~~g~--~~~~l~ell~~aD 285 (656)
..|..+...+|.|+|.|..|..+|+.+.++|. +|+.+|... .. ..+..... ...+|.+.++.+|
T Consensus 181 l~g~~l~d~kVVi~GAGaAG~~iA~ll~~~Ga~~I~v~D~~Gli~~~R~~~L~~~k~~fa~~~~~~~~~~~L~eav~~AD 260 (398)
T 2a9f_A 181 LLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEAAQLAPHHLDIAKVTNREFKSGTLEDALEGAD 260 (398)
T ss_dssp TTTCCTTSCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTCCCSCCC---CHHHHHSCTTCCCSCSHHHHTTC
T ss_pred HhCCCCCccEEEEECCCHHHHHHHHHHHHcCCCeEEEEECCCcccCCccccchHHHHHHhhccCcccchhhHHHHhccCC
Confidence 35678899999999999999999999999999 999998752 10 11111110 1236999999999
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
+++=+- +-+++.++.++.|+++++|+.++.-.
T Consensus 261 V~IG~S-----apgl~T~EmVk~Ma~~pIIfalsNPt 292 (398)
T 2a9f_A 261 IFIGVS-----APGVLKAEWISKMAARPVIFAMANPI 292 (398)
T ss_dssp SEEECC-----STTCCCHHHHHTSCSSCEEEECCSSS
T ss_pred EEEecC-----CCCCCCHHHHHhhCCCCEEEECCCCC
Confidence 987652 35889999999999999999999743
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0018 Score=59.87 Aligned_cols=100 Identities=21% Similarity=0.308 Sum_probs=68.4
Q ss_pred CCCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc
Q 006212 228 VGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 228 ~gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
+-++|+|||. |++|..+++.++..|++|+..+|....+. -.|+... +++++-...|++++++|. +....++.
T Consensus 12 ~p~~vaVvGas~~~g~~G~~~~~~l~~~G~~v~~vnp~~~~~~--i~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~ 88 (140)
T 1iuk_A 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRPP-SALMDHLP 88 (140)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHH
T ss_pred CCCEEEEECCCCCCCChHHHHHHHHHHCCCEEEEeCCCcccCc--CCCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHH
Confidence 3568999999 89999999999999999888887621111 1366554 799988899999999994 55555653
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
+..+ .....++++.+-. ++++.+..++.
T Consensus 89 -~~~~-~gi~~i~~~~g~~----~~~~~~~a~~~ 116 (140)
T 1iuk_A 89 -EVLA-LRPGLVWLQSGIR----HPEFEKALKEA 116 (140)
T ss_dssp -HHHH-HCCSCEEECTTCC----CHHHHHHHHHT
T ss_pred -HHHH-cCCCEEEEcCCcC----HHHHHHHHHHc
Confidence 3333 3334566654322 45555555554
|
| >1pvv_A Otcase, ornithine carbamoyltransferase; dodecamer; 1.87A {Pyrococcus furiosus} SCOP: c.78.1.1 c.78.1.1 PDB: 1a1s_A | Back alignment and structure |
|---|
Probab=96.69 E-value=0.029 Score=58.79 Aligned_cols=94 Identities=18% Similarity=0.206 Sum_probs=70.7
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--Chh-H---H----HHcCCe---ecCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--PAD-K---A----RAVGVE---LVSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~~~-~---a----~~~g~~---~~~l~ell~~aDvV~l~~ 291 (656)
.+.|.+|++||= +++..+++..+..+|++|....|.. +.. . + ++.|.. ..++++.+++||+|..-.
T Consensus 152 ~l~gl~va~vGD~~rva~Sl~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvy~~~ 231 (315)
T 1pvv_A 152 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 231 (315)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCcEEEEECCCcchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEEcc
Confidence 478999999997 8999999999999999999988753 221 1 2 255643 348999999999998843
Q ss_pred CC-------Ccc-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PL-------NPT-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Pl-------t~~-----T~~li~~~~l~~mK~gailINva 319 (656)
=. .++ ...-++.+.++.+||++++.-|.
T Consensus 232 w~smg~~~~~~~~~~~~~~y~v~~ell~~a~~~ai~mH~l 271 (315)
T 1pvv_A 232 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 271 (315)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeccCcccchHHHHHHHHhcCCCHHHHhhcCCCcEEECCC
Confidence 21 011 12456888888899999999986
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0057 Score=64.55 Aligned_cols=67 Identities=22% Similarity=0.293 Sum_probs=50.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHH--HH-------cC----Cee-cCHHHHhccCCEEEEcc--
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA-------VG----VEL-VSFDQALATADFISLHM-- 291 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a--~~-------~g----~~~-~~l~ell~~aDvV~l~~-- 291 (656)
.++|+|||.|.+|..+|..|...|+ +|..||........ .. .+ +.. .++++.+++||+|++++
T Consensus 9 ~~kI~VIGaG~vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~g~ 88 (331)
T 1pzg_A 9 RKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAGL 88 (331)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEccCC
Confidence 3589999999999999999987787 99999987532111 10 11 222 47888899999999999
Q ss_pred CCCc
Q 006212 292 PLNP 295 (656)
Q Consensus 292 Plt~ 295 (656)
|..+
T Consensus 89 p~~~ 92 (331)
T 1pzg_A 89 TKVP 92 (331)
T ss_dssp SSCT
T ss_pred CCCC
Confidence 6443
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=96.66 E-value=0.0038 Score=65.36 Aligned_cols=64 Identities=11% Similarity=0.133 Sum_probs=49.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCC---CEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G---~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 293 (656)
.++||||+|.||+..++.++..+ +++.+ +|++.. ...+.+.|+. +.++++++. +.|+|++|+|.
T Consensus 3 ~rigiiG~G~ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 76 (334)
T 3ohs_X 3 LRWGIVSVGLISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQH 76 (334)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCG
T ss_pred cEEEEECchHHHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCc
Confidence 37999999999999999998653 56654 787752 2344556763 458999997 69999999993
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0046 Score=68.01 Aligned_cols=102 Identities=20% Similarity=0.286 Sum_probs=73.1
Q ss_pred cccccCCCEEEEEecC----------hhHHHHHHHHhcCCCEEEEECCCCChhHHHHc-CCeec-CHHHHhccCCEEEEc
Q 006212 223 VGVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAV-GVELV-SFDQALATADFISLH 290 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG----------~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~-g~~~~-~l~ell~~aDvV~l~ 290 (656)
.+..+.|++|+|+|+- .-...+++.|...|.+|.+|||+...+..... ++.++ ++++.++.||.|+++
T Consensus 316 l~~~~~~~~v~vlGlafK~~~dD~ReSp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~ad~vvi~ 395 (446)
T 4a7p_A 316 MGGDVRGKTVGILGLTFKPNTDDMRDAPSLSIIAALQDAGATVKAYDPEGVEQASKMLTDVEFVENPYAAADGADALVIV 395 (446)
T ss_dssp TTSCCTTCEEEEECCSSSTTSCCCTTCSHHHHHHHHHHTSCEEEEECSSCHHHHGGGCSSCCBCSCHHHHHTTBSEEEEC
T ss_pred hcccCCCCEEEEEEEEeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCCHhHHHhcCCceEecChhHHhcCCCEEEEe
Confidence 3567899999999997 56788999999999999999999743222222 55554 789999999999999
Q ss_pred cCCCccccccccHHHHh-cCCCCcEEEEcCCCchhcHHHH
Q 006212 291 MPLNPTTSKIFNDETFA-KMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 291 ~Plt~~T~~li~~~~l~-~mK~gailINvaRg~ivde~aL 329 (656)
++-. +-+. ++-+.+. .|+ +.+|+|+ |+ +.+.+.+
T Consensus 396 t~~~-~f~~-~d~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 430 (446)
T 4a7p_A 396 TEWD-AFRA-LDLTRIKNSLK-SPVLVDL-RN-IYPPAEL 430 (446)
T ss_dssp SCCT-TTTS-CCHHHHHTTBS-SCBEECS-SC-CSCHHHH
T ss_pred eCCH-Hhhc-CCHHHHHHhcC-CCEEEEC-CC-CCCHHHH
Confidence 8733 3332 3544444 465 4678995 44 4465554
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0017 Score=67.57 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=56.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCCh-h-HHHHcC--------Cee--cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA-D-KARAVG--------VEL--VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~-~-~a~~~g--------~~~--~~l~ell~~aDvV~l~~Plt~ 295 (656)
++|+|||.|.+|..+|..+...|+ +|..+|..... + .+.+.. ... .+ .+.+++||+|+++++...
T Consensus 1 mkI~VIGaG~vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~ 79 (304)
T 2v6b_A 1 MKVGVVGTGFVGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQ 79 (304)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC----
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCC
Confidence 479999999999999999998888 99999986421 1 122211 111 23 356899999999996322
Q ss_pred ccccc-----c--c----H---HHHhcCCCCcEEEEcCCC
Q 006212 296 TTSKI-----F--N----D---ETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 296 ~T~~l-----i--~----~---~~l~~mK~gailINvaRg 321 (656)
..++ + | . ..+....|++++++++-.
T Consensus 80 -~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~~~vi~~tNP 118 (304)
T 2v6b_A 80 -KPGESRLDLLEKNADIFRELVPQITRAAPDAVLLVTSNP 118 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHCSSSEEEECSSS
T ss_pred -CCCCcHHHHHHhHHHHHHHHHHHHHHhCCCeEEEEecCc
Confidence 1111 0 0 1 223334688899887543
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0043 Score=62.03 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=64.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH---HHHcCCeec--C-HHHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK---ARAVGVELV--S-FDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~---a~~~g~~~~--~-l~ell~~aDvV~l~~Plt~~T 297 (656)
..++.|+++.|||.|.+|...++.|...|.+|.+++|....+. +.+.++.+. . -++.+..+|+|+.++. .++
T Consensus 26 fl~L~gk~VLVVGgG~va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~-d~~- 103 (223)
T 3dfz_A 26 MLDLKGRSVLVVGGGTIATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATN-DQA- 103 (223)
T ss_dssp EECCTTCCEEEECCSHHHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCC-CTH-
T ss_pred EEEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCC-CHH-
Confidence 4589999999999999999999999999999999999865332 222234433 1 2356788999987754 332
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|.......+ -.++||++
T Consensus 104 ---~N~~I~~~ak-~gi~VNvv 121 (223)
T 3dfz_A 104 ---VNKFVKQHIK-NDQLVNMA 121 (223)
T ss_dssp ---HHHHHHHHSC-TTCEEEC-
T ss_pred ---HHHHHHHHHh-CCCEEEEe
Confidence 4555555566 55788985
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0014 Score=68.81 Aligned_cols=66 Identities=20% Similarity=0.274 Sum_probs=46.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhHHHHcC-----------Cee-cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVG-----------VEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a~~~g-----------~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
-++|+|||.|.||.++|..++..|. +|..||.......+...+ +.. .+..+.+++||+|++++|..
T Consensus 6 ~~kI~IIGaG~vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 6 GARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 3689999999999999999986554 899999874221111111 111 13456799999999998843
|
| >3r7f_A Aspartate carbamoyltransferase; aspartate transcarbamoylase, carbamoyl phosphate, transferas catalytic cycle; 2.10A {Bacillus subtilis} PDB: 3r7d_A 3r7l_A* 2at2_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.015 Score=60.57 Aligned_cols=92 Identities=24% Similarity=0.300 Sum_probs=67.1
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcc-----
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPT----- 296 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~----- 296 (656)
.+.|++|++||=| ++..+++..+..+|++|....|.. ..+. ...| ...++++.+++||+|..-.--.+.
T Consensus 144 ~l~glkva~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~-~~~g-~~~d~~eav~~aDvvyt~~~q~er~~~~~ 221 (304)
T 3r7f_A 144 TFKGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQDEE-NTFG-TYVSMDEAVESSDVVMLLRIQNERHQSAV 221 (304)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-CSSC-EECCHHHHHHHCSEEEECCCCTTTCCSSC
T ss_pred CCCCCEEEEEcCCCCcchHHHHHHHHHHcCCEEEEECCCccCcch-hhcC-ccCCHHHHhCCCCEEEeccchhhccccch
Confidence 4789999999975 699999999999999999988753 1121 1223 345899999999999884311110
Q ss_pred ------ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 ------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 ------T~~li~~~~l~~mK~gailINva 319 (656)
...-++.+.++.+|++++|.-|.
T Consensus 222 ~~~~~~~~y~v~~~~l~~a~~~ai~mHcl 250 (304)
T 3r7f_A 222 SQEGYLNKYGLTVERAERMKRHAIIMHPA 250 (304)
T ss_dssp CSTTHHHHHSBCHHHHTTSCTTCEEECCS
T ss_pred hHHHHhCCCccCHHHHhhcCCCCEEECCC
Confidence 01336778888888888888885
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0038 Score=57.51 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=46.0
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
+.+.+..+|+||+++++.++|+++||||.+|...+ .++.+.+++.++ -.+.+.+.|.+
T Consensus 73 svv~v~~~d~pGvla~i~~~L~~~~InI~~~~~~~--~~~~~~~~i~~~--d~~~A~~~L~~ 130 (144)
T 2f06_A 73 DVVGISCPNVPGALAKVLGFLSAEGVFIEYMYSFA--NNNVANVVIRPS--NMDKCIEVLKE 130 (144)
T ss_dssp EEEEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEE--ETTEEEEEEEES--CHHHHHHHHHH
T ss_pred eEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEEEc--cCCcEEEEEEeC--CHHHHHHHHHH
Confidence 34555789999999999999999999999988875 356788888886 23566777766
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0029 Score=66.51 Aligned_cols=63 Identities=21% Similarity=0.261 Sum_probs=49.3
Q ss_pred CEEEEEecChhHHHHHHHHh-cC-CCEEE-EECCCCC--hhHHHHcC--Ce-ecCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAK-GL-GMNVI-AHDPYAP--ADKARAVG--VE-LVSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk-~~-G~~Vi-~~d~~~~--~~~a~~~g--~~-~~~l~ell~~--aDvV~l~~P 292 (656)
.+|||||+|.||+..++.++ .. ++++. ++|+... ...+.+.| .. +.++++++++ .|+|++|+|
T Consensus 3 ~rigiIG~G~~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 75 (344)
T 3mz0_A 3 LRIGVIGTGAIGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSW 75 (344)
T ss_dssp EEEEEECCSHHHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred EEEEEECccHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCC
Confidence 37999999999999999998 54 78877 5788752 23345567 33 3589999976 999999999
|
| >1dxh_A Ornithine carbamoyltransferase; transcarbamylase; 2.50A {Pseudomonas aeruginosa} SCOP: c.78.1.1 c.78.1.1 PDB: 1ort_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.02 Score=60.53 Aligned_cols=127 Identities=17% Similarity=0.166 Sum_probs=86.2
Q ss_pred HhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHhc
Q 006212 173 TEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAKG 250 (656)
Q Consensus 173 ~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk~ 250 (656)
.-.+|+|.|.-+....++ .+++=++.+.++ .|..+.|.+|++||=| ++..+++..+..
T Consensus 119 ~~s~vPVINa~~~~~HPt--Q~LaDl~Ti~e~------------------~g~~l~gl~va~vGD~~~~va~Sl~~~~~~ 178 (335)
T 1dxh_A 119 KFAGVPVFNGLTDEYHPT--QMLADVLTMREH------------------SDKPLHDISYAYLGDARNNMGNSLLLIGAK 178 (335)
T ss_dssp HHSSSCEEEEECSSCCHH--HHHHHHHHHHHT------------------CSSCGGGCEEEEESCCSSHHHHHHHHHHHH
T ss_pred HhCCCCEEcCCCCCCCcH--HHHHHHHHHHHH------------------cCCCcCCeEEEEecCCccchHHHHHHHHHH
Confidence 344688999765444343 233333333321 2325789999999996 999999999999
Q ss_pred CCCEEEEECCCC---ChhH---H----HHcCCe---ecCHHHHhccCCEEEEccCC--Ccc-----------ccccccHH
Q 006212 251 LGMNVIAHDPYA---PADK---A----RAVGVE---LVSFDQALATADFISLHMPL--NPT-----------TSKIFNDE 304 (656)
Q Consensus 251 ~G~~Vi~~d~~~---~~~~---a----~~~g~~---~~~l~ell~~aDvV~l~~Pl--t~~-----------T~~li~~~ 304 (656)
+|++|....|.. +.+. + ++.|.. ..++++.+++||+|..-.=. ..+ ...-++.+
T Consensus 179 ~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~e~~~er~~~~~~y~v~~~ 258 (335)
T 1dxh_A 179 LGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTDVWVSMGEPVEAWGERIKELLPYQVNME 258 (335)
T ss_dssp TTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECCCSCSSSCGGGCHHHHHHHGGGCBCHH
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhCCCCEEEeCCccccCccchhhHHHHHHhhcceeCHH
Confidence 999999988753 2211 2 255643 24899999999999883321 000 12456888
Q ss_pred HHhcC-CCCcEEEEcC
Q 006212 305 TFAKM-KKGVRIVNVA 319 (656)
Q Consensus 305 ~l~~m-K~gailINva 319 (656)
.++.+ ||+++|.-|.
T Consensus 259 ll~~a~~~~ai~mHcL 274 (335)
T 1dxh_A 259 IMKATGNPRAKFMHCL 274 (335)
T ss_dssp HHHTTCCSSCEEEECS
T ss_pred HHHhccCCCeEEECCC
Confidence 88889 9999999986
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0013 Score=68.39 Aligned_cols=63 Identities=16% Similarity=0.267 Sum_probs=46.2
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCCh-hHHHHcCCe-ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA-DKARAVGVE-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~-~~a~~~g~~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+.+++.++.. +++++ ++|+.... +.+.+. +. +.+++++++ ++|+|++|+|.
T Consensus 11 ~~igiIG~G~~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~ 79 (315)
T 3c1a_A 11 VRLALIGAGRWGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPP 79 (315)
T ss_dssp EEEEEEECTTTTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCG
T ss_pred ceEEEECCcHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCCh
Confidence 4799999999999999999875 67765 67876421 111111 33 347899985 89999999993
|
| >3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0029 Score=67.71 Aligned_cols=65 Identities=23% Similarity=0.393 Sum_probs=46.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC----CeecC---HHHHhccCCEEEE
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG----VELVS---FDQALATADFISL 289 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g----~~~~~---l~ell~~aDvV~l 289 (656)
.-+.||||+|+|.|.+|+.+++.++.+|++|+++|++.......... ..+.+ +.++++++|+|+.
T Consensus 10 ~~~~~k~IlIlG~G~~g~~la~aa~~~G~~vi~~d~~~~~~~~~~ad~~~~~~~~d~~~l~~~~~~~dvI~~ 81 (389)
T 3q2o_A 10 IILPGKTIGIIGGGQLGRMMALAAKEMGYKIAVLDPTKNSPCAQVADIEIVASYDDLKAIQHLAEISDVVTY 81 (389)
T ss_dssp CCCTTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSTTCTTTTTCSEEEECCTTCHHHHHHHHHTCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCCCCchHHhCCceEecCcCCHHHHHHHHHhCCEeee
Confidence 45789999999999999999999999999999999864211000000 01122 5567778888744
|
| >1duv_G Octase-1, ornithine transcarbamoylase; enzyme-inhibitor complex, transferase; HET: PSQ; 1.70A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1akm_A* 2otc_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.016 Score=61.27 Aligned_cols=127 Identities=18% Similarity=0.163 Sum_probs=86.1
Q ss_pred hcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHhcC
Q 006212 174 EFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAKGL 251 (656)
Q Consensus 174 ~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk~~ 251 (656)
-.+|+|.|+-+....++ .+++=++.+.+++ .|..+.|.+|++||=| ++..+++..+..+
T Consensus 119 ~~~vPVINa~~~~~HPt--Q~LaDl~Ti~e~~-----------------~g~~l~gl~ia~vGD~~~~va~Sl~~~~~~~ 179 (333)
T 1duv_G 119 YASVPVWNGLTNEFHPT--QLLADLLTMQEHL-----------------PGKAFNEMTLVYAGDARNNMGNSMLEAAALT 179 (333)
T ss_dssp HHSSCEEESCCSSCCHH--HHHHHHHHHHHHS-----------------TTCCGGGCEEEEESCTTSHHHHHHHHHHHHH
T ss_pred hCCCCeEcCCCCCCCch--HHHHHHHHHHHHh-----------------cCCCCCCcEEEEECCCccchHHHHHHHHHHc
Confidence 34688999766444443 2333333333210 1325789999999986 9999999999999
Q ss_pred CCEEEEECCCC---ChhH-------HHHcCCe---ecCHHHHhccCCEEEEccCC--Ccc-----------ccccccHHH
Q 006212 252 GMNVIAHDPYA---PADK-------ARAVGVE---LVSFDQALATADFISLHMPL--NPT-----------TSKIFNDET 305 (656)
Q Consensus 252 G~~Vi~~d~~~---~~~~-------a~~~g~~---~~~l~ell~~aDvV~l~~Pl--t~~-----------T~~li~~~~ 305 (656)
|++|....|.. +.+. +++.|.. ..++++.+++||+|..-.=. ..+ ...-++.+.
T Consensus 180 G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~~~~~~~er~~~~~~y~v~~~l 259 (333)
T 1duv_G 180 GLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTDVWVSMGEAKEKWAERIALLREYQVNSKM 259 (333)
T ss_dssp CCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBCHHH
T ss_pred CCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEEECHHHHhCCCCEEEeCCccccCccccchHHHHHHhhccccCHHH
Confidence 99999988753 2211 2256643 34899999999999883321 000 124568888
Q ss_pred HhcC-CCCcEEEEcC
Q 006212 306 FAKM-KKGVRIVNVA 319 (656)
Q Consensus 306 l~~m-K~gailINva 319 (656)
++.+ ||+++|.-|.
T Consensus 260 l~~a~~~~ai~mHcL 274 (333)
T 1duv_G 260 MQLTGNPEVKFLHCL 274 (333)
T ss_dssp HHTTCCTTCEEEECS
T ss_pred HHhccCCCcEEECCC
Confidence 8889 9999999986
|
| >2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0045 Score=60.31 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=60.0
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCCCHHHHHHHhcCCCccEEEEEee
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVPAIEEYTLLHV 632 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~~~e~l~~L~~~~~V~~v~~v~l 632 (656)
.+.|-+...|+||++++|+.++.+.|+||..+.+......+..-+.|.++ +..-+.+.++|.++..|.+|..+.-
T Consensus 29 ~~~LsVlVeN~pGvLaRItglfsrRG~NI~SLtV~~ted~gisRitIvV~g~e~~ieqL~kQL~KLidVikV~dl~~ 105 (193)
T 2fgc_A 29 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTPIDP 105 (193)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEECCS
T ss_pred EEEEEEEECCCChHHHHHHHHHHHCCceEEEEEeeccCCCCEEEEEEEEECCHHHHHHHHHHhcCcCceEEEEEecC
Confidence 47788888999999999999999999999999998766556666655554 4455588888888888888776543
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0023 Score=69.70 Aligned_cols=90 Identities=20% Similarity=0.306 Sum_probs=63.5
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----C---HHHH-hccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Plt~~T~ 298 (656)
+.+|.|+|+|++|+.+|+.|+..|.+|++.|.+. ..+.+.+.|+..+ + |.++ +.+||+|++++|....+
T Consensus 4 ~~~viIiG~Gr~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n- 82 (413)
T 3l9w_A 4 GMRVIIAGFGRFGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTN- 82 (413)
T ss_dssp CCSEEEECCSHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHH-
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHH-
Confidence 4569999999999999999999999999999875 3345566676432 2 3333 68899999999854322
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
+.-......+.|...+|--++
T Consensus 83 -~~i~~~ar~~~p~~~Iiara~ 103 (413)
T 3l9w_A 83 -LQLTEMVKEHFPHLQIIARAR 103 (413)
T ss_dssp -HHHHHHHHHHCTTCEEEEEES
T ss_pred -HHHHHHHHHhCCCCeEEEEEC
Confidence 222344555677766655444
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0042 Score=65.88 Aligned_cols=64 Identities=16% Similarity=0.312 Sum_probs=50.4
Q ss_pred CCEEEEEecChhHHHHHHHHh-cC-CCEEE-EECCCCCh--hHHHHcC--Ce-ecCHHHHhc--cCCEEEEccC
Q 006212 229 GKTLAVMGFGKVGSEVARRAK-GL-GMNVI-AHDPYAPA--DKARAVG--VE-LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk-~~-G~~Vi-~~d~~~~~--~~a~~~g--~~-~~~l~ell~--~aDvV~l~~P 292 (656)
-.+|||||+|.||+..++.++ .. ++++. ++|++... ..+.+.| .. +.++++++. +.|+|++|+|
T Consensus 23 ~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp 96 (357)
T 3ec7_A 23 TLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITAS 96 (357)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSC
T ss_pred eeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCC
Confidence 358999999999999999998 54 78877 58987643 3345567 43 458999987 5899999999
|
| >4amu_A Ornithine carbamoyltransferase, catabolic; ornithine transcarbamoylase, hydrolase; 2.50A {Mycoplasma penetrans} PDB: 4anf_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.024 Score=60.53 Aligned_cols=93 Identities=19% Similarity=0.154 Sum_probs=69.5
Q ss_pred cCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC--C---hh-------HHHHcCCe--e-cCHHHHhccCCEEEE
Q 006212 227 LVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA--P---AD-------KARAVGVE--L-VSFDQALATADFISL 289 (656)
Q Consensus 227 l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~--~---~~-------~a~~~g~~--~-~~l~ell~~aDvV~l 289 (656)
+.|++|++||=| ++..+++..+..+|++|....|.. + .+ .+.+.|.. . .++++.+++||+|..
T Consensus 178 l~glkva~vGD~~nnva~Sl~~~~~~lG~~v~~~~P~~~~p~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDVVyt 257 (365)
T 4amu_A 178 LKNKKIVFIGDYKNNVGVSTMIGAAFNGMHVVMCGPDNYKNEIDKNVLAKCIELFKRNGGSLRFSTDKILAAQDADVIYT 257 (365)
T ss_dssp CTTCEEEEESSTTSHHHHHHHHHHHHTTCEEEEESCGGGGGGSCHHHHHHHHHHHHHHSCEEEEESCHHHHTTTCSEEEE
T ss_pred CCCCEEEEECCCCcchHHHHHHHHHHcCCEEEEECCccccCCCcHHHHHHHHHHHHHcCCEEEEECCHHHHhcCCCEEEe
Confidence 789999999988 789999999999999999988753 2 11 12345643 3 389999999999987
Q ss_pred cc--CCCcc-----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 290 HM--PLNPT-----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 290 ~~--Plt~~-----------T~~li~~~~l~~mK~gailINva 319 (656)
-+ ...++ ...-++.+.++.+|++++|.-|.
T Consensus 258 d~W~smg~~~~~~~er~~~~~~y~vt~ell~~a~~dai~MHcL 300 (365)
T 4amu_A 258 DVWVSLGEPFELFDKRIGELKNFQVDMNMIKAAKNDVIFLHCL 300 (365)
T ss_dssp CCSCCTTCCHHHHHHHHHHHTTCCBCHHHHHHSCTTCEEEECS
T ss_pred cccccCCchhhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 32 11111 12447888888899999999886
|
| >1oth_A Protein (ornithine transcarbamoylase); transferase; HET: PAO; 1.85A {Homo sapiens} SCOP: c.78.1.1 c.78.1.1 PDB: 1ep9_A 1fvo_A 1c9y_A* 1fb5_A | Back alignment and structure |
|---|
Probab=96.45 E-value=0.029 Score=58.94 Aligned_cols=126 Identities=16% Similarity=0.097 Sum_probs=82.6
Q ss_pred HhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC-hhHHHHHHHHhcC
Q 006212 173 TEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG-KVGSEVARRAKGL 251 (656)
Q Consensus 173 ~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG-~IG~~vA~~lk~~ 251 (656)
...+|+|+|+-+....++ .+++=++.+.++ .| .+.|.+|++||=| ++..+++..+..+
T Consensus 120 ~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g-~l~gl~va~vGD~~~va~Sl~~~~~~~ 178 (321)
T 1oth_A 120 KEASIPIINGLSDLYHPI--QILADYLTLQEH------------------YS-SLKGLTLSWIGDGNNILHSIMMSAAKF 178 (321)
T ss_dssp HHCSSCEEESCCSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCSSHHHHHHHTTTGGG
T ss_pred HhCCCCEEcCCCCCCCcH--HHHHHHHHHHHH------------------hC-CcCCcEEEEECCchhhHHHHHHHHHHc
Confidence 345689999876554444 233333333321 12 4789999999985 4888888888889
Q ss_pred CCEEEEECCCC---ChhH---H----HHcCC--e-ecCHHHHhccCCEEEEccCC--Cc--c--------ccccccHHHH
Q 006212 252 GMNVIAHDPYA---PADK---A----RAVGV--E-LVSFDQALATADFISLHMPL--NP--T--------TSKIFNDETF 306 (656)
Q Consensus 252 G~~Vi~~d~~~---~~~~---a----~~~g~--~-~~~l~ell~~aDvV~l~~Pl--t~--~--------T~~li~~~~l 306 (656)
|++|....|.. +.+. + ++.|. . ..++++.++++|+|..-+-. .. + ...-++.+.+
T Consensus 179 G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~~~~~~d~~eav~~aDvvy~d~w~s~g~e~~~~~~~~~~~~y~v~~~~l 258 (321)
T 1oth_A 179 GMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDTWISMGREEEKKKRLQAFQGYQVTMKTA 258 (321)
T ss_dssp TCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSSCTTCGGGHHHHHHHTTTCCBCHHHH
T ss_pred CCeEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEECHHHHhccCCEEEEeccccccchhhhHHHHHhccCceECHHHH
Confidence 99999988753 2211 1 13453 3 34899999999999984311 11 1 1144677888
Q ss_pred hcCCCCcEEEEcC
Q 006212 307 AKMKKGVRIVNVA 319 (656)
Q Consensus 307 ~~mK~gailINva 319 (656)
+.+||+++|.-|.
T Consensus 259 ~~a~~dai~mH~l 271 (321)
T 1oth_A 259 KVAASDWTFLHCL 271 (321)
T ss_dssp HTSCTTCEEEECS
T ss_pred hhcCCCCEEECCC
Confidence 8888888888885
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0041 Score=65.23 Aligned_cols=71 Identities=23% Similarity=0.349 Sum_probs=53.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC-hhHHHH--------cCC--ee---cCH---HHHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKARA--------VGV--EL---VSF---DQALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~-~~~a~~--------~g~--~~---~~l---~ell~~aD 285 (656)
+.++.||++.|+|.|.+|+.++..|...|. +|.+++|... .+++++ .+. .. .++ .+.+.++|
T Consensus 143 ~~~l~gk~~lVlGAGGaaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~D 222 (312)
T 3t4e_A 143 GFDMRGKTMVLLGAGGAATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASAD 222 (312)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCS
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCce
Confidence 456889999999999999999999999998 8999998732 222221 122 12 233 55688999
Q ss_pred EEEEccCCC
Q 006212 286 FISLHMPLN 294 (656)
Q Consensus 286 vV~l~~Plt 294 (656)
+|+.++|..
T Consensus 223 iIINaTp~G 231 (312)
T 3t4e_A 223 ILTNGTKVG 231 (312)
T ss_dssp EEEECSSTT
T ss_pred EEEECCcCC
Confidence 999999964
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0087 Score=65.81 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=68.0
Q ss_pred ccccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcC--Ceec-CHHHHhccCCEEEEc
Q 006212 224 GVSLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELV-SFDQALATADFISLH 290 (656)
Q Consensus 224 g~~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g--~~~~-~l~ell~~aDvV~l~ 290 (656)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||+...+.....+ +.++ ++++.++.||.|+++
T Consensus 313 ~~~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~ 392 (450)
T 3gg2_A 313 KGNVQGRCVAIWGLSFKPGTDDMREAPSLVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHV 392 (450)
T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEEC
T ss_pred cccCCCCEEEEEeeeeCCCCcccccChHHHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEc
Confidence 5578999999999852 36789999999999999999997433222333 5554 788999999999999
Q ss_pred cCCCccccccccHHHH-hcCCCCcEEEEcCCC
Q 006212 291 MPLNPTTSKIFNDETF-AKMKKGVRIVNVARG 321 (656)
Q Consensus 291 ~Plt~~T~~li~~~~l-~~mK~gailINvaRg 321 (656)
++- ++-+. ++-+.+ ..|+ +.+|+|+ |+
T Consensus 393 t~~-~~f~~-~~~~~~~~~~~-~~~i~D~-r~ 420 (450)
T 3gg2_A 393 TEW-KEFRM-PDWSALSQAMA-ASLVIDG-RN 420 (450)
T ss_dssp SCC-GGGSS-CCHHHHHHHSS-SCEEEES-SC
T ss_pred cCC-HHHhh-cCHHHHHHhcC-CCEEEEC-CC
Confidence 883 33333 344444 4465 5689995 44
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0034 Score=65.31 Aligned_cols=98 Identities=13% Similarity=0.191 Sum_probs=59.8
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCChhHHHHcCCee---cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPADKARAVGVEL---VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~~~a~~~g~~~---~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.+|||||+|+||+.+++.++.. ++++. ++|+.... ++..|+.+ .++.+. .++|+|++|+|... . -+.
T Consensus 10 irv~IIG~G~iG~~~~~~l~~~~~~elvav~d~~~~~--~~~~g~~~~~~~~l~~~-~~~DvViiatp~~~--h---~~~ 81 (304)
T 3bio_A 10 IRAAIVGYGNIGRYALQALREAPDFEIAGIVRRNPAE--VPFELQPFRVVSDIEQL-ESVDVALVCSPSRE--V---ERT 81 (304)
T ss_dssp EEEEEECCSHHHHHHHHHHHHCTTEEEEEEECC---------CCTTSCEESSGGGS-SSCCEEEECSCHHH--H---HHH
T ss_pred CEEEEECChHHHHHHHHHHhcCCCCEEEEEEcCCHHH--HHHcCCCcCCHHHHHhC-CCCCEEEECCCchh--h---HHH
Confidence 4799999999999999999864 78887 58876532 22256542 245444 78999999999332 1 122
Q ss_pred HHhcCCCCcEEEEcCC--Cch-hcHHHHHHhHhc
Q 006212 305 TFAKMKKGVRIVNVAR--GGV-IDEEALVRALDS 335 (656)
Q Consensus 305 ~l~~mK~gailINvaR--g~i-vde~aL~~aL~~ 335 (656)
....++.|.-+++..- +.. .+.+.|.++.++
T Consensus 82 ~~~al~aG~~Vi~ekP~~a~~~~~~~~l~~~a~~ 115 (304)
T 3bio_A 82 ALEILKKGICTADSFDIHDGILALRRSLGDAAGK 115 (304)
T ss_dssp HHHHHTTTCEEEECCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCeEEECCCCCCCCHHHHHHHHHHHHh
Confidence 2334667777776532 212 234455555554
|
| >1ml4_A Aspartate transcarbamoylase; beta pleated sheet, protein inhibitor complex, transferase; HET: PAL; 1.80A {Pyrococcus abyssi} SCOP: c.78.1.1 c.78.1.1 | Back alignment and structure |
|---|
Probab=96.44 E-value=0.013 Score=61.30 Aligned_cols=94 Identities=14% Similarity=0.190 Sum_probs=68.4
Q ss_pred ccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCCC--Ch----hHHHHcCCee---cCHHHHhccCCEEEEccCC
Q 006212 226 SLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA--PA----DKARAVGVEL---VSFDQALATADFISLHMPL 293 (656)
Q Consensus 226 ~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~~--~~----~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl 293 (656)
.+.|++|++||=| ++..+++..+..+|++|....|.. +. +.+++.|..+ .++++.+++||+|..-.=-
T Consensus 152 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~q 231 (308)
T 1ml4_A 152 RIDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRIQ 231 (308)
T ss_dssp CSSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCCC
T ss_pred CCCCeEEEEeCCCCcCchHHHHHHHHHHCCCEEEEECCccccCCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCcc
Confidence 4789999999984 899999999999999999988753 22 2233446542 4899999999999885421
Q ss_pred Cc------c-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NP------T-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~------~-----T~~li~~~~l~~mK~gailINva 319 (656)
.+ + ...-++.+.++.+||++++.-|.
T Consensus 232 ~er~~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 268 (308)
T 1ml4_A 232 KERFPDEQEYLKVKGSYQVNLKVLEKAKDELRIMHPL 268 (308)
T ss_dssp GGGSSSHHHHHTTTTCCCBCTTGGGGSCTTCEEECCS
T ss_pred ccccCCHHHHHHHhcCcccCHHHHhhcCCCCEEECCC
Confidence 10 0 02345677777778888888775
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0034 Score=61.57 Aligned_cols=65 Identities=12% Similarity=0.220 Sum_probs=48.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hH-HHHcCCeec-----C---HHHH-hccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DK-ARAVGVELV-----S---FDQA-LATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~-a~~~g~~~~-----~---l~el-l~~aDvV~l~~Plt 294 (656)
++|.|+|+|.+|+.+|+.|...|.+|+++|++... +. ....|+..+ + ++++ +.+||+|++++|..
T Consensus 1 M~iiIiG~G~~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d 76 (218)
T 3l4b_C 1 MKVIIIGGETTAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRD 76 (218)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCc
Confidence 36899999999999999999999999999987522 22 233455332 2 3443 67899999999844
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0039 Score=65.35 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=64.0
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+.+++.+... ++++. ++|++...... .|+.. .++++++.++|+|++|+|... . -+...
T Consensus 4 irV~IiG~G~mG~~~~~~l~~~~~~elvav~d~~~~~~~~--~gv~~~~d~~~ll~~~DvViiatp~~~--h---~~~~~ 76 (320)
T 1f06_A 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATLDTK--TPVFDVADVDKHADDVDVLFLCMGSAT--D---IPEQA 76 (320)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCCSSS--SCEEEGGGGGGTTTTCSEEEECSCTTT--H---HHHHH
T ss_pred CEEEEEeecHHHHHHHHHHhcCCCCEEEEEEcCCHHHhhc--CCCceeCCHHHHhcCCCEEEEcCCcHH--H---HHHHH
Confidence 3799999999999999999866 68765 57876432211 45543 377888889999999998432 1 12233
Q ss_pred hcCCCCcEEEEcCCCchh--cH-HHHHHhHhc
Q 006212 307 AKMKKGVRIVNVARGGVI--DE-EALVRALDS 335 (656)
Q Consensus 307 ~~mK~gailINvaRg~iv--de-~aL~~aL~~ 335 (656)
..++.|.-++...-..+- +. +.|.++.++
T Consensus 77 ~al~aG~~Vv~ekp~~~~~~~~~~~l~~~a~~ 108 (320)
T 1f06_A 77 PKFAQFACTVDTYDNHRDIPRHRQVMNEAATA 108 (320)
T ss_dssp HHHTTTSEEECCCCCGGGHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEECCCCcCCHHHHHHHHHHHHHh
Confidence 446777766665443332 22 345554444
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0073 Score=64.19 Aligned_cols=63 Identities=22% Similarity=0.388 Sum_probs=46.9
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEE-EECCCCChhHHHHc-CCe-ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPADKARAV-GVE-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi-~~d~~~~~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+. .+..++.. +++|. ++|+.... ..... ++. +.++++++. +.|+|++|+|.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~ 77 (364)
T 3e82_A 8 INIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEK-VKRDLPDVTVIASPEAAVQHPDVDLVVIASPN 77 (364)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHH-HHHHCTTSEEESCHHHHHTCTTCSEEEECSCG
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHhhCCCCcEECCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999997 77777766 78886 46876422 12233 444 358999998 79999999994
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0022 Score=64.95 Aligned_cols=105 Identities=17% Similarity=0.207 Sum_probs=65.4
Q ss_pred HHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-------------------ChhH-
Q 006212 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------------PADK- 266 (656)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-------------------~~~~- 266 (656)
+.++++-.+|... .-..|.+++|.|||.|.+|..+|+.|...|. ++..+|+.. +...
T Consensus 12 y~Rq~~l~~~g~~--~q~~l~~~~VlVvG~Gg~G~~va~~La~~Gv~~i~lvD~d~v~~sNl~Rq~l~~~~diG~~Ka~~ 89 (249)
T 1jw9_B 12 YNRQIILRGFDFD--GQEALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVES 89 (249)
T ss_dssp THHHHTSTTTHHH--HHHHHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCBCCGGGGGTCTTCCGGGTTSBHHHH
T ss_pred hhheecccccCHH--HHHHHhCCeEEEEeeCHHHHHHHHHHHHcCCCeEEEEcCCCcccccCCcccccChhhcCcHHHHH
Confidence 3444444446431 1235889999999999999999999998897 888888764 1111
Q ss_pred H----HHc--CCe--e----c---CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 267 A----RAV--GVE--L----V---SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 267 a----~~~--g~~--~----~---~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+ .+. ++. . . +++++++++|+|+.+++ +.+++.++++..... +..+|+.
T Consensus 90 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~~~~l~~~~~~~---~~p~i~~ 152 (249)
T 1jw9_B 90 ARDALTRINPHIAITPVNALLDDAELAALIAEHDLVLDCTD-NVAVRNQLNAGCFAA---KVPLVSG 152 (249)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHTSSEEEECCS-SHHHHHHHHHHHHHH---TCCEEEE
T ss_pred HHHHHHHHCCCcEEEEEeccCCHhHHHHHHhCCCEEEEeCC-CHHHHHHHHHHHHHc---CCCEEEe
Confidence 1 111 121 1 1 24566778888888876 455666666554432 3335554
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0078 Score=63.26 Aligned_cols=62 Identities=19% Similarity=0.251 Sum_probs=46.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhH--HHH-------c--C--Cee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK--ARA-------V--G--VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~--a~~-------~--g--~~~-~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|+ +|..+|....... +.. . . +.. .++ +.+++||+|+++++
T Consensus 5 ~kI~VIGaG~vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g 81 (322)
T 1t2d_A 5 AKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAG 81 (322)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCC
Confidence 589999999999999999998787 8999998753211 100 1 1 122 366 77999999999993
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0033 Score=67.89 Aligned_cols=89 Identities=16% Similarity=0.239 Sum_probs=61.2
Q ss_pred EEEEEecChhHHHHHHHHhcCC--------CEEEEECCCCC---hhHHHHc-----------CC------ee-cCHHHHh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG--------MNVIAHDPYAP---ADKARAV-----------GV------EL-VSFDQAL 281 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G--------~~Vi~~d~~~~---~~~a~~~-----------g~------~~-~~l~ell 281 (656)
+|+|||.|..|.++|..|..-| .+|..|.+... ....... |+ .. .++++.+
T Consensus 36 KI~ViGaGsWGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al 115 (391)
T 4fgw_A 36 KVTVIGSGNWGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSV 115 (391)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHH
T ss_pred eEEEECcCHHHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHH
Confidence 7999999999999999987432 46877765421 1111110 12 22 3799999
Q ss_pred ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 282 ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 282 ~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
+.||+|++++| ....+.++ ++....++++..+|+++.|
T Consensus 116 ~~ad~ii~avP-s~~~r~~l-~~l~~~~~~~~~iv~~~KG 153 (391)
T 4fgw_A 116 KDVDIIVFNIP-HQFLPRIC-SQLKGHVDSHVRAISCLKG 153 (391)
T ss_dssp TTCSEEEECSC-GGGHHHHH-HHHTTTSCTTCEEEECCCS
T ss_pred hcCCEEEEECC-hhhhHHHH-HHhccccCCCceeEEeccc
Confidence 99999999999 44344443 2333457889999999987
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0099 Score=62.59 Aligned_cols=62 Identities=16% Similarity=0.269 Sum_probs=47.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHH--HH-------c--C--Cee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA-------V--G--VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a--~~-------~--g--~~~-~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|+ +|..||........ .. . . +.. .++ +.+++||+|+++++
T Consensus 15 ~kI~ViGaG~vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg 91 (328)
T 2hjr_A 15 KKISIIGAGQIGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAG 91 (328)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCS
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCC
Confidence 689999999999999999998888 99999987532111 00 0 1 222 356 77899999999994
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=96.32 E-value=0.011 Score=62.48 Aligned_cols=102 Identities=16% Similarity=0.188 Sum_probs=64.5
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCC--hhHHHHcCC----e-ecCHHHHhc--cCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAP--ADKARAVGV----E-LVSFDQALA--TADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~--~~~a~~~g~----~-~~~l~ell~--~aDvV~l~~Plt~~T~ 298 (656)
.+|||||+|.||+.+++.++.. ++++. ++|+... ...+.+.|+ . +.+++++++ ++|+|++|+|.. ..
T Consensus 7 ~~vgiiG~G~ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~--~h 84 (362)
T 1ydw_A 7 IRIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTS--LH 84 (362)
T ss_dssp EEEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGG--GH
T ss_pred eEEEEECchHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChH--HH
Confidence 3799999999999999998865 67765 5787652 223445563 3 348999986 599999999933 22
Q ss_pred ccccHHHHhcCCCCc-EEEEc-CCCchhcHHHHHHhHhcC
Q 006212 299 KIFNDETFAKMKKGV-RIVNV-ARGGVIDEEALVRALDSG 336 (656)
Q Consensus 299 ~li~~~~l~~mK~ga-ilINv-aRg~ivde~aL~~aL~~g 336 (656)
. +-....++.|. +++.- ---.+-+.++|.++.++.
T Consensus 85 ~---~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~ 121 (362)
T 1ydw_A 85 V---EWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEAN 121 (362)
T ss_dssp H---HHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHTT
T ss_pred H---HHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHHc
Confidence 1 22233356665 34332 112233456677766654
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0051 Score=65.33 Aligned_cols=88 Identities=20% Similarity=0.258 Sum_probs=64.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHH-HcCCeec----C---HHHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKAR-AVGVELV----S---FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~-~~g~~~~----~---l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.|++|.|+|.|.||...++.++.+|++|++.++.. ..+.+. ++|...+ + +.++....|+|+-++.....
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~D~vid~~g~~~~-- 264 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKEEALKNFGADSFLVSRDQEQMQAAAGTLDGIIDTVSAVHP-- 264 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHTSCCSEEEETTCHHHHHHTTTCEEEEEECCSSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCceEEeccCHHHHHHhhCCCCEEEECCCcHHH--
Confidence 68999999999999999999999999999998765 334444 6776422 2 23334568999888874321
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
-...+..|+++..+++++.
T Consensus 265 ---~~~~~~~l~~~G~iv~~g~ 283 (366)
T 1yqd_A 265 ---LLPLFGLLKSHGKLILVGA 283 (366)
T ss_dssp ---SHHHHHHEEEEEEEEECCC
T ss_pred ---HHHHHHHHhcCCEEEEEcc
Confidence 2456677888888888874
|
| >4f2g_A Otcase 1, ornithine carbamoyltransferase 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.032 Score=58.31 Aligned_cols=94 Identities=15% Similarity=0.167 Sum_probs=66.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hhH-HHHcCC--ee-cCHHHHhccCCEEEEcc----CC
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK-ARAVGV--EL-VSFDQALATADFISLHM----PL 293 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~~-a~~~g~--~~-~~l~ell~~aDvV~l~~----Pl 293 (656)
.+.|++|+|||= +++..+++..+..+|++|....|.. + .+. +++.|. .. .++++.+++||+|..-+ ..
T Consensus 151 ~l~glkva~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~smg~ 230 (309)
T 4f2g_A 151 PIRGKTVAWVGDANNMLYTWIQAARILDFKLQLSTPPGYALDAKLVDAESAPFYQVFDDPNEACKGADLVTTDVWTSMGF 230 (309)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCGGGCCCGGGSCGGGGGGEEECSSHHHHTTTCSEEEECCC-----
T ss_pred CCCCCEEEEECCCcchHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHcCCeEEEEcCHHHHhcCCCEEEecccccCcc
Confidence 478999999986 5788888888989999999988742 2 221 223333 33 38999999999998743 10
Q ss_pred ---Ccc-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 294 ---NPT-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 ---t~~-----T~~li~~~~l~~mK~gailINva 319 (656)
..+ ...-++.+.++.+|++++|.-|.
T Consensus 231 e~~~~~r~~~~~~y~v~~~~l~~a~~~ai~mH~l 264 (309)
T 4f2g_A 231 EAENEARKRAFADWCVDEEMMSHANSDALFMHCL 264 (309)
T ss_dssp -------CCSGGGGCBCHHHHTTSCTTCEEEECS
T ss_pred hhhHHHHHHHhcCceeCHHHHHhcCCCeEEECCC
Confidence 000 12446888888889999998886
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0051 Score=60.91 Aligned_cols=85 Identities=16% Similarity=0.289 Sum_probs=56.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeec-----C---HHHH-hccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Plt~~T~ 298 (656)
.+++.|+|+|.+|+.+|+.|...|. |+++|++... +.+. .|+..+ + |+++ +.+||.|++++|... .
T Consensus 9 ~~~viI~G~G~~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~--~ 84 (234)
T 2aef_A 9 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDS--E 84 (234)
T ss_dssp -CEEEEESCCHHHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHH--H
T ss_pred CCEEEEECCChHHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcH--H
Confidence 4689999999999999999999999 9999987532 2333 565432 2 3333 788999999998432 2
Q ss_pred ccccHHHHhcCCCCcEEEE
Q 006212 299 KIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 299 ~li~~~~l~~mK~gailIN 317 (656)
++.-......+.++..++-
T Consensus 85 n~~~~~~a~~~~~~~~iia 103 (234)
T 2aef_A 85 TIHCILGIRKIDESVRIIA 103 (234)
T ss_dssp HHHHHHHHHHHCSSSEEEE
T ss_pred HHHHHHHHHHHCCCCeEEE
Confidence 2222334455666634433
|
| >4a8t_A Putrescine carbamoyltransferase; trabnsferase PALO, delta-N-(phosphonoacetyl)-L- ornithine, agmatine deiminase route, agmatine catabolism; HET: PAO PGE; 1.59A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.073 Score=56.29 Aligned_cols=129 Identities=16% Similarity=0.190 Sum_probs=82.2
Q ss_pred HHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEec-ChhHHHHHHHHhc
Q 006212 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-GKVGSEVARRAKG 250 (656)
Q Consensus 172 a~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-G~IG~~vA~~lk~ 250 (656)
|...+|+|+|+-+....++ .+++=++.+.++.+ .|..+.|++|++||= +++..+++..+..
T Consensus 136 A~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~~----------------~G~~l~glkva~vGD~~rva~Sl~~~~~~ 197 (339)
T 4a8t_A 136 ANCATIPVINGMSDYNHPT--QELGDLCTMVEHLP----------------EGKKLEDCKVVFVGDATQVCFSLGLITTK 197 (339)
T ss_dssp HHHCSSCEEECCCSSCCHH--HHHHHHHHHHHTCC----------------TTCCGGGCEEEEESSCCHHHHHHHHHHHH
T ss_pred HHhCCCCEEECCCCCcCcH--HHHHHHHHHHHHhh----------------cCCCCCCCEEEEECCCchhHHHHHHHHHH
Confidence 3445789999866443333 22333333332110 032578999999986 6788899999999
Q ss_pred CCCEEEEECCCC--Ch-hH-------HHHcCCe--e-cCHHHHhccCCEEEEcc--CCC--ccc----------cccccH
Q 006212 251 LGMNVIAHDPYA--PA-DK-------ARAVGVE--L-VSFDQALATADFISLHM--PLN--PTT----------SKIFND 303 (656)
Q Consensus 251 ~G~~Vi~~d~~~--~~-~~-------a~~~g~~--~-~~l~ell~~aDvV~l~~--Plt--~~T----------~~li~~ 303 (656)
+|++|....|.. +. .. +.+.|.. . .+++ .+++||+|..-+ ... .+. ..-++.
T Consensus 198 ~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~-av~~aDvvytd~w~smg~~~~~~~er~~~~~~~y~vt~ 276 (339)
T 4a8t_A 198 MGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDVWYGLYEAELSEEERMKVFYPKYQVNQ 276 (339)
T ss_dssp TTCEEEEECCTTSSCCHHHHHHHHHHHHHHCCEEEEECCGG-GGTTCSEEEECCSSCCTTSCCCHHHHHHHHTTTTCBCH
T ss_pred cCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEECChh-HHcCCCEEEecCcccCCchhhhhHHHHHHhccccccCH
Confidence 999999988753 22 11 2344643 2 3899 999999998732 111 110 144677
Q ss_pred HHHhcCCCCcEEEEcC
Q 006212 304 ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 304 ~~l~~mK~gailINva 319 (656)
+.++.+|++++|.-|.
T Consensus 277 ell~~ak~dai~mHcL 292 (339)
T 4a8t_A 277 EMMDRAGANCKFMHCL 292 (339)
T ss_dssp HHHHHHCTTCEEEECS
T ss_pred HHHHhcCCCcEEECCC
Confidence 7777788888888886
|
| >3csu_A Protein (aspartate carbamoyltransferase); transferase (carbamoyl-P; 1.88A {Escherichia coli} SCOP: c.78.1.1 c.78.1.1 PDB: 1r0b_A* 1q95_A* 1raa_A* 1rab_A* 1rac_A* 1rad_A* 1rae_A* 1raf_A* 1rag_A* 1rah_A* 1rai_A* 1r0c_A* 1za2_A* 1za1_A* 2fzc_A* 2fzg_A* 2fzk_A* 2h3e_A* 2ipo_A* 2qg9_A ... | Back alignment and structure |
|---|
Probab=96.24 E-value=0.028 Score=58.81 Aligned_cols=94 Identities=14% Similarity=0.221 Sum_probs=68.4
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcC-CCEEEEECCCC--C-h---hHHHHcCCee---cCHHHHhccCCEEEEccC
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA--P-A---DKARAVGVEL---VSFDQALATADFISLHMP 292 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~-G~~Vi~~d~~~--~-~---~~a~~~g~~~---~~l~ell~~aDvV~l~~P 292 (656)
.+.|++|+++|= |++..+++..+..+ |++|....|.. + . +.+++.|..+ .++++.+++||+|..-.=
T Consensus 151 ~l~gl~va~vGD~~~~rva~Sl~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvyt~~~ 230 (310)
T 3csu_A 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRV 230 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCGGGTTTTCSEEEECC-
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEECCc
Confidence 478999999998 59999999999999 99999988753 2 2 2234456542 389999999999987543
Q ss_pred CCc----cc------cccccHHHHhcCCCCcEEEEcC
Q 006212 293 LNP----TT------SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt~----~T------~~li~~~~l~~mK~gailINva 319 (656)
-.+ +. ..-++.+.++.+||++++.-|.
T Consensus 231 q~er~~~~~~~~~~~~y~v~~~ll~~a~~~ai~mH~l 267 (310)
T 3csu_A 231 QKERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 267 (310)
T ss_dssp ----------------CCBCGGGGTTCCTTCEEECCS
T ss_pred cccccCHHHHHHHhhccCCCHHHHhhcCCCCEEECCC
Confidence 111 00 2345777788888888888886
|
| >4fcc_A Glutamate dehydrogenase; protein complex, rossmann fold, metabolic role, NAD, NADP, oxidoreductase; 2.00A {Escherichia coli O157} PDB: 4fhn_X 2yfg_A 3sbo_A 2yfg_E | Back alignment and structure |
|---|
Probab=96.20 E-value=0.028 Score=61.51 Aligned_cols=96 Identities=19% Similarity=0.234 Sum_probs=64.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhH------------------HHHcCCeecC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADK------------------ARAVGVELVS 276 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~------------------a~~~g~~~~~ 276 (656)
+.++.|||+.|=|+|++|..+|+.|...|.+|++ |||.- +.+. +.+.|..+++
T Consensus 230 ~~~l~Gk~vaVQG~GnVG~~aa~~L~e~GakvVavsD~~G~i~d~~Gid~e~l~~l~e~k~~~~g~v~~~~~~~g~~~~~ 309 (450)
T 4fcc_A 230 GMGFEGMRVSVSGSGNVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLVYLE 309 (450)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHTSTTCCHHHHHHHHTCEEEE
T ss_pred CCCcCCCEEEEeCCChHHHHHHHHHHhcCCeEEEEecCCceEEeCCCCCHHHHHHHHHHhcccCCccccccccCCcEEec
Confidence 4578999999999999999999999999999986 45542 2211 1122444444
Q ss_pred HHHHh-ccCCEEEEccCCCccccccccHHHHhcCCCC--cEEEEcCCCchh
Q 006212 277 FDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKKG--VRIVNVARGGVI 324 (656)
Q Consensus 277 l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK~g--ailINvaRg~iv 324 (656)
-++++ -+||+.+-|. +.+.|+.+....++.+ .++++-+-+.+-
T Consensus 310 ~~~i~~~~~DI~iPcA-----l~~~I~~~~a~~L~a~g~k~IaEgAN~p~t 355 (450)
T 4fcc_A 310 GQQPWSVPVDIALPCA-----TQNELDVDAAHQLIANGVKAVAEGANMPTT 355 (450)
T ss_dssp TCCGGGSCCSEEEECS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBC
T ss_pred CcccccCCccEEeecc-----ccccccHHHHHHHHhcCceEEecCCCCCCC
Confidence 34443 3688887765 3455777777776543 466666666653
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=96.16 E-value=0.015 Score=60.20 Aligned_cols=91 Identities=18% Similarity=0.208 Sum_probs=59.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCC-hh-HHH--HcCC------e--ec-CHHHHhccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-AD-KAR--AVGV------E--LV-SFDQALATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~-~~-~a~--~~g~------~--~~-~l~ell~~aDvV~l~~Pl 293 (656)
.++|+|||.|.||..+|..|...|. +|..+|+... .+ .+. ..+. . .. + .+.++.||+|+++++.
T Consensus 7 ~mkI~IiGaG~vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~ 85 (319)
T 1lld_A 7 PTKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGP 85 (319)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCC
Confidence 4689999999999999999998888 9999998742 11 111 1221 1 11 3 3567899999999963
Q ss_pred Ccccccc------------cc--HHHHhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKI------------FN--DETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~l------------i~--~~~l~~mK~gailINvaRg 321 (656)
. ...+. +. ...+....++++++++.-|
T Consensus 86 ~-~~~g~~r~~~~~~n~~~~~~~~~~i~~~~~~~~vi~~~Np 126 (319)
T 1lld_A 86 R-QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLITNP 126 (319)
T ss_dssp C-CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSS
T ss_pred C-CCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecCc
Confidence 2 22211 00 1122223678899988654
|
| >2w37_A Ornithine carbamoyltransferase, catabolic; transcarbamylase, metal binding-site, hexamer, cytoplasm, arginine metabolism; 2.10A {Lactobacillus hilgardii} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.04 Score=58.69 Aligned_cols=127 Identities=22% Similarity=0.264 Sum_probs=85.3
Q ss_pred HHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHh
Q 006212 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAK 249 (656)
Q Consensus 172 a~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk 249 (656)
|.-.+|+|.|+-+....++ .+|+=++.+.++ .| .+.|.+|++||=| ++..+++..+.
T Consensus 140 A~~s~vPVINa~~~~~HPt--QaLaDl~Ti~E~------------------~g-~l~gl~va~vGD~~~rva~Sl~~~~~ 198 (359)
T 2w37_A 140 ARDSGVPVWNGLTDEWHPT--QMLADFMTVKEN------------------FG-KLQGLTLTFMGDGRNNVANSLLVTGA 198 (359)
T ss_dssp HHHSSSCEEEEECSSCCHH--HHHHHHHHHHHH------------------HS-CCTTCEEEEESCTTSHHHHHHHHHHH
T ss_pred HHhCCCCEEcCCCCCCCcc--HHHHHHHHHHHH------------------hC-CcCCeEEEEECCCccchHHHHHHHHH
Confidence 3345688999765444333 233333333321 12 4789999999996 99999999999
Q ss_pred cCCCEEEEECCCC---ChhH-------HHHcCC--ee-cCHHHHhccCCEEEEccCC--Ccc---------ccccccHHH
Q 006212 250 GLGMNVIAHDPYA---PADK-------ARAVGV--EL-VSFDQALATADFISLHMPL--NPT---------TSKIFNDET 305 (656)
Q Consensus 250 ~~G~~Vi~~d~~~---~~~~-------a~~~g~--~~-~~l~ell~~aDvV~l~~Pl--t~~---------T~~li~~~~ 305 (656)
.+|++|....|.. +.+. +++.|. .. .++++.+++||+|..-.=. ..+ ...-++.+.
T Consensus 199 ~lG~~v~~~~P~~l~p~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDvvytd~w~smg~ee~~er~~~~~~y~v~~el 278 (359)
T 2w37_A 199 ILGVNIHIVAPKALFPTEETQNIAKGFAEKSGAKLVITDDLDEGLKGSNVVYTDVWVSMGESNWEERVKELTPYQVNMEA 278 (359)
T ss_dssp HHTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECCSCCTTCTTHHHHHHHHGGGCBCHHH
T ss_pred HcCCEEEEECCccccCCHHHHHHHHHHHHHcCCeEEEEeCHHHHhcCCCEEEEcccccccccchHHHHHHhhccccCHHH
Confidence 9999999988753 2211 125564 33 4899999999999883320 000 124567888
Q ss_pred HhcCC---CCcEEEEcC
Q 006212 306 FAKMK---KGVRIVNVA 319 (656)
Q Consensus 306 l~~mK---~gailINva 319 (656)
++.+| ++++|.-|.
T Consensus 279 l~~ak~~~~dai~MHcL 295 (359)
T 2w37_A 279 MKKTGTPDDQLIFMHCL 295 (359)
T ss_dssp HHTTCCCGGGCEEEECS
T ss_pred HHhhCCCCCCEEEECCC
Confidence 88888 899998886
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0087 Score=63.12 Aligned_cols=94 Identities=15% Similarity=0.081 Sum_probs=61.5
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhHH----HHc-------CCee-cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKA----RAV-------GVEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a----~~~-------g~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
.++|+|||.|.||.++|..+...|+ +|..+|........ .+. ++.. .+..+.+++||+|+++.+.
T Consensus 5 ~~kI~ViGaG~vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~- 83 (326)
T 3pqe_A 5 VNKVALIGAGFVGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGA- 83 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSC-
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEeccc-
Confidence 5689999999999999999987776 99999986421111 111 1222 2234678999999999863
Q ss_pred cccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 295 PTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 295 ~~T~~l-----i--~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
+...++ + |. +.+....|++++++++ ..+|
T Consensus 84 p~kpG~~R~dL~~~N~~Iv~~i~~~I~~~~p~a~vlvvt--NPvd 126 (326)
T 3pqe_A 84 NQKPGETRLELVEKNLKIFKGIVSEVMASGFDGIFLVAT--NPVD 126 (326)
T ss_dssp CCCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHH
T ss_pred CCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEcC--ChHH
Confidence 332222 1 11 1233356789999997 4444
|
| >2dvm_A Malic enzyme, 439AA long hypothetical malate oxidoreductase; NAD, structural genomics, NPPSFA; HET: NAD MES; 1.60A {Pyrococcus horikoshii} PDB: 1ww8_A* | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0086 Score=65.60 Aligned_cols=94 Identities=21% Similarity=0.212 Sum_probs=71.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC---EEEEEC----CC--CChh-H---HH--------HcCC--eecCHHHH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM---NVIAHD----PY--APAD-K---AR--------AVGV--ELVSFDQA 280 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~---~Vi~~d----~~--~~~~-~---a~--------~~g~--~~~~l~el 280 (656)
|..+.++++.|+|.|..|+.+++.|...|. +|+.+| +. .... . .. ..+. ...++.+.
T Consensus 181 g~~l~~~rvlvlGAGgAg~aia~~L~~~G~~~~~I~vvd~~~~R~G~~~~a~~~~~L~~~~~~~a~~~~~~~~~~~L~e~ 260 (439)
T 2dvm_A 181 GKKISEITLALFGAGAAGFATLRILTEAGVKPENVRVVELVNGKPRILTSDLDLEKLFPYRGWLLKKTNGENIEGGPQEA 260 (439)
T ss_dssp TCCTTTCCEEEECCSHHHHHHHHHHHHTTCCGGGEEEEEEETTEEEECCTTSCHHHHSTTCHHHHTTSCTTCCCSSHHHH
T ss_pred CCCccCCEEEEECccHHHHHHHHHHHHcCCCcCeEEEEEccCCCcCccccccchhHHHHHHHHHhhccccccccccHHHH
Confidence 456889999999999999999999999998 799998 65 2111 1 11 0111 13468899
Q ss_pred hccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
++++|+|+-++|..+ +++.++.++.|+++.++.|++.
T Consensus 261 l~~aDVlInaT~~~~---G~~~~e~v~~m~~~~iVfDLyn 297 (439)
T 2dvm_A 261 LKDADVLISFTRPGP---GVIKPQWIEKMNEDAIVFPLAN 297 (439)
T ss_dssp HTTCSEEEECSCCCS---SSSCHHHHTTSCTTCEEEECCS
T ss_pred hccCCEEEEcCCCcc---CCCChHHHHhcCCCCEEEECCC
Confidence 999999999998532 4566667788999999999953
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=96.14 E-value=0.018 Score=63.40 Aligned_cols=93 Identities=18% Similarity=0.198 Sum_probs=67.9
Q ss_pred ccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHc--------------CCeec-CHHHH
Q 006212 226 SLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAV--------------GVELV-SFDQA 280 (656)
Q Consensus 226 ~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~--------------g~~~~-~l~el 280 (656)
.+.|++|+|+|+-- -...+++.|...|.+|.+|||+...+..... ++.+. ++.+.
T Consensus 326 ~~~~~~v~vlGlafK~~~dD~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (467)
T 2q3e_A 326 TVTDKKIAILGFAFKKDTGDTRESSSIYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEA 405 (467)
T ss_dssp CCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHH
T ss_pred ccCCCEEEEEeeccCCCCcchhhChHHHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHH
Confidence 58999999999974 6778999999999999999998754432111 24444 68889
Q ss_pred hccCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEcCCC
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETF-AKMKKGVRIVNVARG 321 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l-~~mK~gailINvaRg 321 (656)
++.||.|++++.- ++-+. ++-+.+ ..|+...+|+|+ |+
T Consensus 406 ~~~ad~~vi~t~~-~~f~~-~~~~~~~~~~~~~~~i~D~-r~ 444 (467)
T 2q3e_A 406 CDGAHAVVICTEW-DMFKE-LDYERIHKKMLKPAFIFDG-RR 444 (467)
T ss_dssp HTTCSEEEECSCC-GGGGG-SCHHHHHHHSCSSCEEEES-SC
T ss_pred HhCCcEEEEecCC-hhhhc-CCHHHHHHhcCCCCEEEeC-CC
Confidence 9999999999984 33333 344443 457776668886 44
|
| >1b7g_O Protein (glyceraldehyde 3-phosphate dehydrogenase; archaea, hyperthermophIle, GAPDH, hyperthermophilic dehydrog oxidoreductase; 2.05A {Sulfolobus solfataricus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0093 Score=63.23 Aligned_cols=84 Identities=15% Similarity=0.228 Sum_probs=52.9
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCCh--hHHHHcCCeec------------------CHHHHhccCCEEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA--DKARAVGVELV------------------SFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~--~~a~~~g~~~~------------------~l~ell~~aDvV~ 288 (656)
+|||+|+|+||+.+++.+... ++++.+ .|+.... ..+...|+... ++++++.++|+|+
T Consensus 3 kVgIiGaG~iG~~~~r~L~~~p~~elvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~v~v~~~~e~l~~~vDvV~ 82 (340)
T 1b7g_O 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (340)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEEecCHHHHHHHHHHHcCCCCEEEEEEcCChHHHHHHHHhcCcceecCcCHHHHhcccccccccCHhHhhcCCCEEE
Confidence 799999999999999999865 678766 4654321 22333343221 3445566899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.|+|... +... ... .++.|+.+|+.+
T Consensus 83 ~aTp~~~-s~~~--a~~--~~~aG~kvV~~s 108 (340)
T 1b7g_O 83 DTTPNGV-GAQY--KPI--YLQLQRNAIFQG 108 (340)
T ss_dssp ECCSTTH-HHHH--HHH--HHHTTCEEEECT
T ss_pred ECCCCch-hHHH--HHH--HHHcCCeEEEeC
Confidence 9998432 1111 111 235677777765
|
| >1js1_X Transcarbamylase; alpha/beta topology, two domains, transferase; 2.00A {Bacteroides fragilis} SCOP: c.78.1.1 c.78.1.1 PDB: 2fg6_X* 2fg7_X* 2g7m_X* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.095 Score=55.05 Aligned_cols=126 Identities=13% Similarity=0.011 Sum_probs=79.1
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEE-----EecChhHHHH
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAV-----MGFGKVGSEV 244 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGI-----IGlG~IG~~v 244 (656)
.|+-.+|+|+|.-+....++ .+++=++.+.++ .| ..+. .+|++ +|=+++..++
T Consensus 130 lA~~~~vPVINa~~~~~HPt--QaLaDl~Ti~e~------------------~g~~~l~-l~ia~a~~~~vGD~rva~Sl 188 (324)
T 1js1_X 130 FIQHSGRPVFSMEAATRHPL--QSFADLITIEEY------------------KKTARPK-VVMTWAPHPRPLPQAVPNSF 188 (324)
T ss_dssp HHHHSSSCEEESSCSSCCHH--HHHHHHHHHHHH------------------CSSSSCE-EEEECCCCSSCCCSHHHHHH
T ss_pred HHhhCCCCEEECCCCCCCcH--HHHHHHHHHHHH------------------cCCCCee-EEEEEEcccccCCcchHHHH
Confidence 34455799999866444443 233333333321 12 1356 89999 9999999999
Q ss_pred HHHHhcCCCEEEEECCCC--ChhHHHHcCCee-cCHHHHhccCCEEEEccCCC--c---------cccccccHHHHhcCC
Q 006212 245 ARRAKGLGMNVIAHDPYA--PADKARAVGVEL-VSFDQALATADFISLHMPLN--P---------TTSKIFNDETFAKMK 310 (656)
Q Consensus 245 A~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt--~---------~T~~li~~~~l~~mK 310 (656)
+..+..+|++|....|.. +..... .++.. .++++.+++||+|..-.=.. . .....++.+.++.+|
T Consensus 189 ~~~~~~~G~~v~~~~P~~~~~~~~~~-~~~~~~~d~~eav~~aDvvy~~~w~s~g~~~~~~~~~r~~~y~vt~e~l~~a~ 267 (324)
T 1js1_X 189 AEWMNATDYEFVITHPEGYELDPKFV-GNARVEYDQMKAFEGADFIYAKNWAAYTGDNYGQILSTDRNWTVGDRQMAVTN 267 (324)
T ss_dssp HHHHHTSSSEEEEECCTTCCCCHHHH-TTCEEESCHHHHHTTCSEEEECCCCCCSTTCTTCCCCCCTTSSBCHHHHTTSS
T ss_pred HHHHHHCCCEEEEeCCcccCCChhhc-cceEEECCHHHHhCCCCEEEecCcccCCCccccchHHHhcCcccCHHHHHhcC
Confidence 999999999999998854 222221 35554 48999999999998833211 0 011334555555555
Q ss_pred CCcEEEEcC
Q 006212 311 KGVRIVNVA 319 (656)
Q Consensus 311 ~gailINva 319 (656)
++++.-|.
T Consensus 268 -~ai~MHcL 275 (324)
T 1js1_X 268 -NAYFMHCL 275 (324)
T ss_dssp -SCEEECCS
T ss_pred -CcEEECCC
Confidence 55555554
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.023 Score=59.65 Aligned_cols=95 Identities=16% Similarity=0.221 Sum_probs=61.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhH--HHHc---------CCee--cCHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK--ARAV---------GVEL--VSFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~--a~~~---------g~~~--~~l~ell~~aDvV~l~~Pl 293 (656)
..++|+|||.|.+|.++|..+...|+ +|..+|....... +.++ .... .+-.+.+++||+|+++.+.
T Consensus 4 ~~~kI~iiGaG~vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d~~a~~~aDvVIi~ag~ 83 (321)
T 3p7m_A 4 ARKKITLVGAGNIGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTNDYKDLENSDVVIVTAGV 83 (321)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCCHHHHCCCCEEEEcCCc
Confidence 35799999999999999999987666 9999998763211 1111 1222 2335789999999999763
Q ss_pred Cccccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 294 NPTTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 294 t~~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
+...++- |. +.+....|++++++++ ..+|
T Consensus 84 -p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd 126 (321)
T 3p7m_A 84 -PRKPGMSRDDLLGINIKVMQTVGEGIKHNCPNAFVICIT--NPLD 126 (321)
T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHH
T ss_pred -CCCCCCCHHHHHHHhHHHHHHHHHHHHHHCCCcEEEEec--CchH
Confidence 3222221 11 1222345889999995 4555
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0097 Score=62.53 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=65.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--CHHHHhccCCEEEEccCCCccccccccHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|...+ +.+++.+..|+|+-++.... .-..
T Consensus 176 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~-----~~~~ 250 (348)
T 3two_A 176 KGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHY-----DLKD 250 (348)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCC-----CHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHH-----HHHH
Confidence 48899999999999999999999999999999776 5677788887432 33333336788887776331 1244
Q ss_pred HHhcCCCCcEEEEcCC
Q 006212 305 TFAKMKKGVRIVNVAR 320 (656)
Q Consensus 305 ~l~~mK~gailINvaR 320 (656)
.+..++++..++.++.
T Consensus 251 ~~~~l~~~G~iv~~G~ 266 (348)
T 3two_A 251 YLKLLTYNGDLALVGL 266 (348)
T ss_dssp HHTTEEEEEEEEECCC
T ss_pred HHHHHhcCCEEEEECC
Confidence 5666788888888764
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0059 Score=64.80 Aligned_cols=63 Identities=16% Similarity=0.240 Sum_probs=47.1
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEE-EECCCCCh--hHHHHcC-Ce-ecCHHHHhccC--CEEEEccC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPA--DKARAVG-VE-LVSFDQALATA--DFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi-~~d~~~~~--~~a~~~g-~~-~~~l~ell~~a--DvV~l~~P 292 (656)
.+|||||+|.||+. +++.++.. +.++. ++|++... ..+...+ .. +.++++++.+. |+|++|+|
T Consensus 6 ~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 77 (359)
T 3m2t_A 6 IKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGP 77 (359)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSC
T ss_pred ceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCC
Confidence 48999999999995 88988876 78877 67887522 2223332 33 45899999854 99999999
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=96.09 E-value=0.013 Score=60.11 Aligned_cols=66 Identities=17% Similarity=0.150 Sum_probs=49.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC--hhHHHHcCCeec-CHHHHhccCCEEEEccCCCc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP--ADKARAVGVELV-SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~--~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~ 295 (656)
.++++.|||.|.+|+.++..|...|. +|.+++|... ...+...+..+. ++. +.++|+|+.++|...
T Consensus 118 ~~~~vlvlGaGgaarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm 187 (271)
T 1npy_A 118 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGM 187 (271)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTC
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCc
Confidence 47899999999999999999999997 7999998752 223344454333 222 468999999999653
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0088 Score=62.74 Aligned_cols=93 Identities=22% Similarity=0.252 Sum_probs=60.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHH-------c--CCee--cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARA-------V--GVEL--VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~-------~--g~~~--~~l~ell~~aDvV~l~~Plt 294 (656)
.+|+|||.|.||.++|..+...|+ +|..+|....... +.+ . .... .+..+.+++||+|+++.+.
T Consensus 1 Mkv~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~- 79 (314)
T 3nep_X 1 MKVTVIGAGNVGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGL- 79 (314)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC-
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCC-
Confidence 479999999999999999987666 9999998763211 111 1 1222 2567889999999999874
Q ss_pred ccccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 295 PTTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 295 ~~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
+...++- |. +.+....|++++++++ ..+|
T Consensus 80 ~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vivvt--NPvd 122 (314)
T 3nep_X 80 PRSPGMSRDDLLAKNTEIVGGVTEQFVEGSPDSTIIVVA--NPLD 122 (314)
T ss_dssp -------CHHHHHHHHHHHHHHHHHHHTTCTTCEEEECC--SSHH
T ss_pred CCCCCCCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEecC--Cchh
Confidence 3222221 11 1233456889999997 4444
|
| >4ep1_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; 3.25A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.079 Score=56.02 Aligned_cols=94 Identities=22% Similarity=0.324 Sum_probs=68.0
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hh---H----HHHcCCe--e-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-AD---K----ARAVGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~---~----a~~~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|++|+|||= +++..+++..+..+|++|....|.. + .+ . +++.|.. . .++++.+++||+|..-.
T Consensus 176 ~l~glkva~vGD~~nva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~G~~v~~~~d~~eav~~aDVvyt~~ 255 (340)
T 4ep1_A 176 TFKGIKLAYVGDGNNVCHSLLLASAKVGMHMTVATPVGYRPNEEIVKKALAIAKETGAEIEILHNPELAVNEADFIYTDV 255 (340)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHCCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCeEEEECCHHHHhCCCCEEEecC
Confidence 378999999986 5788888888989999999988753 2 21 1 2345643 2 38999999999998744
Q ss_pred CCCc----c-------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNP----T-------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~----~-------T~~li~~~~l~~mK~gailINva 319 (656)
=... + ...-++.+.++.+|++++|.-|.
T Consensus 256 w~smg~e~~~~~~~~~~~y~vt~ell~~ak~dai~MHcL 294 (340)
T 4ep1_A 256 WMSMGQEGEEEKYTLFQPYQINKELVKHAKQTYHFLHCL 294 (340)
T ss_dssp C------CHHHHHHHHGGGCBCHHHHTTSCTTCEEEECS
T ss_pred ccCCCCCchHHHHHHhccccCCHHHHHhcCCCcEEECCC
Confidence 2110 0 12356888888889999999886
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0067 Score=61.68 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=66.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEE-EECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi-~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
+..+|+++|+|.||+.+++. . ++++. +|+ .. +.++|+.. .++++++.++|+|+=|.+. + -+.+..
T Consensus 11 ~~~rV~i~G~GaIG~~v~~~--~-~leLv~v~~-~k----~gelgv~a~~d~d~lla~pD~VVe~A~~-~----av~e~~ 77 (253)
T 1j5p_A 11 HHMTVLIIGMGNIGKKLVEL--G-NFEKIYAYD-RI----SKDIPGVVRLDEFQVPSDVSTVVECASP-E----AVKEYS 77 (253)
T ss_dssp CCCEEEEECCSHHHHHHHHH--S-CCSEEEEEC-SS----CCCCSSSEECSSCCCCTTCCEEEECSCH-H----HHHHHH
T ss_pred ccceEEEECcCHHHHHHHhc--C-CcEEEEEEe-cc----ccccCceeeCCHHHHhhCCCEEEECCCH-H----HHHHHH
Confidence 46799999999999999998 4 78764 467 22 11226654 4799999999999887752 1 233334
Q ss_pred HhcCCCCcEEEEcCCCchhcH---HHHHHhHhcC
Q 006212 306 FAKMKKGVRIVNVARGGVIDE---EALVRALDSG 336 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde---~aL~~aL~~g 336 (656)
..-|+.|.=++-++-|.+.|. +.|.++-++|
T Consensus 78 ~~iL~aG~dvv~~S~gaLad~~l~~~L~~aA~~g 111 (253)
T 1j5p_A 78 LQILKNPVNYIIISTSAFADEVFRERFFSELKNS 111 (253)
T ss_dssp HHHTTSSSEEEECCGGGGGSHHHHHHHHHHHHTC
T ss_pred HHHHHCCCCEEEcChhhhcCHHHHHHHHHHHHHC
Confidence 455899999999988888775 3444444443
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.008 Score=63.54 Aligned_cols=64 Identities=19% Similarity=0.293 Sum_probs=47.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcC--------CCEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGL--------GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~--------G~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 292 (656)
--+|||||+|.||+.-++.++.. +++|.+ +|++.. ...+++.|+. +.+++++++ +.|+|++|+|
T Consensus 25 kirvgiIG~G~ig~~H~~a~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP 103 (393)
T 4fb5_A 25 PLGIGLIGTGYMGKCHALAWNAVKTVFGDVERPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTP 103 (393)
T ss_dssp CCEEEEECCSHHHHHHHHHHTTHHHHHCSSCCCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSC
T ss_pred CccEEEEcCCHHHHHHHHHHHhhhhhhccCCCcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCC
Confidence 34899999999999877766542 567765 688753 3456667874 458999986 5799999999
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0076 Score=63.27 Aligned_cols=62 Identities=19% Similarity=0.311 Sum_probs=47.9
Q ss_pred EEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccC
Q 006212 231 TLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 292 (656)
++||||+|.||+. .+..++.. +++|.+ +|++.. .+.+++.|+. +.+++++++ +.|+|++|+|
T Consensus 25 rigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP 95 (350)
T 4had_A 25 RFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLP 95 (350)
T ss_dssp EEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSC
T ss_pred EEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCC
Confidence 7999999999986 56677755 788875 788752 3445667874 458999985 5899999999
|
| >4a8p_A Putrescine carbamoyltransferase; ornithine agmatine deiminase route; HET: PAO; 2.00A {Enterococcus faecalis} PDB: 4a8h_A* 3txx_A | Back alignment and structure |
|---|
Probab=96.02 E-value=0.09 Score=55.91 Aligned_cols=93 Identities=15% Similarity=0.212 Sum_probs=64.8
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--Ch-hH-------HHHcCCe--e-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--PA-DK-------ARAVGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~~-~~-------a~~~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|++|+|||= +++..+++..+..+|++|....|.. +. .. +.+.|.. . .+++ .++++|+|..-+
T Consensus 150 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~p~~~~~~~~~~~a~~~G~~v~~~~d~~-av~~aDVVytd~ 228 (355)
T 4a8p_A 150 KLEDCKVVFVGDATQVCFSLGLITTKMGMNFVHFGPEGFQLNEEHQAKLAKNCEVSGGSFLVTDDAS-SVEGADFLYTDV 228 (355)
T ss_dssp CGGGCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTSSCCHHHHHHHHHHHHHHSCEEEEECCGG-GGTTCSEEEECC
T ss_pred CCCCCEEEEECCCchhHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEECCHH-HHcCCCEEEecc
Confidence 578999999986 6888899999999999999988753 22 11 2344643 2 4899 999999998732
Q ss_pred --CCCc--cc----------cccccHHHHhcCCCCcEEEEcC
Q 006212 292 --PLNP--TT----------SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 --Plt~--~T----------~~li~~~~l~~mK~gailINva 319 (656)
...+ +. ..-++.+.++.+|++++|.-|.
T Consensus 229 w~smgq~~~~~~er~~~~~~~y~vt~ell~~ak~dai~MHcL 270 (355)
T 4a8p_A 229 WYGLYEAELSEEERMKVFYPKYQVNQEMMDRAGANCKFMHCL 270 (355)
T ss_dssp SSEETTEECCHHHHHHHHTTTTCBCHHHHHHHCTTCEEEECS
T ss_pred cccCcchhhhhHHHHHHhccccccCHHHHHhcCCCcEEECCC
Confidence 1001 10 1345677777777777777775
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0074 Score=63.65 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=60.3
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHHc--------CCee-cCHHHHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--------GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~~--------g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
-.+++|+|||.|.||.++|..+...|+ ++..+|....... +.++ .+.. .+..+.+++||+|+++...
T Consensus 7 ~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~ 86 (326)
T 3vku_A 7 KDHQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGA 86 (326)
T ss_dssp CCCCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCC
Confidence 356799999999999999999987666 8999998642111 1111 1222 2446779999999998763
Q ss_pred Cc---cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 294 NP---TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 294 t~---~T~~-li--~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
.. +++. ++ |. +.+....|++++++++ ..+|
T Consensus 87 ~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~ilvvt--NPvd 129 (326)
T 3vku_A 87 PQKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVAA--NPVD 129 (326)
T ss_dssp C----------------CHHHHHHHHHTTTCCSEEEECS--SSHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHHhcCCceEEEEcc--CchH
Confidence 21 1221 22 11 2233456788899886 4444
|
| >3grf_A Ornithine carbamoyltransferase; ornithine transcarbamoylase, arginine degradation pathway, giardia lamblia, drug target; 2.00A {Giardia intestinalis} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.08 Score=55.78 Aligned_cols=133 Identities=14% Similarity=0.092 Sum_probs=83.8
Q ss_pred HhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHHhc
Q 006212 173 TEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRAKG 250 (656)
Q Consensus 173 ~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~lk~ 250 (656)
...+|+|+|+-.....++ .+++=++.+.++. | |.. .....+.|++|++||=| ++..+++..+..
T Consensus 119 ~~~~vPVINag~~~~HPt--QaLaDl~Ti~e~~---------g-~~~--~~~~~l~gl~va~vGD~~~~va~Sl~~~~~~ 184 (328)
T 3grf_A 119 QHASVPCINALDDFGHPL--QMVCDFMTIKEKF---------T-AAG--EFSNGFKGIKFAYCGDSMNNVTYDLMRGCAL 184 (328)
T ss_dssp HHCSSCEEESSCSSCCHH--HHHHHHHHHHHHH---------H-HTT--CCTTTGGGCCEEEESCCSSHHHHHHHHHHHH
T ss_pred HhCCCCEEeCCCCCCCcH--HHHHHHHHHHHHh---------C-Ccc--ccccccCCcEEEEeCCCCcchHHHHHHHHHH
Confidence 345688999866544333 2233333333321 1 110 01235889999999986 889999999999
Q ss_pred CCCEEEEECCCC-C---h-h---HHH----H--cCCe--e-cCHHHHhccCCEEEEc----cCCCcc---------cccc
Q 006212 251 LGMNVIAHDPYA-P---A-D---KAR----A--VGVE--L-VSFDQALATADFISLH----MPLNPT---------TSKI 300 (656)
Q Consensus 251 ~G~~Vi~~d~~~-~---~-~---~a~----~--~g~~--~-~~l~ell~~aDvV~l~----~Plt~~---------T~~l 300 (656)
+|++|....|.. . . + .++ + .|.. . .++++.+++||+|..- +...++ ...-
T Consensus 185 ~G~~v~~~~P~~~~~~p~~~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvytd~W~sm~iq~er~~~~~~~~~~y~ 264 (328)
T 3grf_A 185 LGMECHVCCPDHKDFKPIKEVIDECEEIIAKHGTGGSIKIFHDCKKGCEGVDVVYTDSWMSYHITKEQKEARLKVLTPFQ 264 (328)
T ss_dssp HTCEEEEECCSSGGGSCCHHHHHHHHHHHHHHTCCCEEEEESSHHHHHTTCSEEEECCCC--------CCTHHHHHGGGC
T ss_pred cCCEEEEECChHhhhCCCHHHHHHHHHHHhhccCCCeEEEEcCHHHHhcCCCEEEecCccccCCcHHHHHHHHHHhcCCC
Confidence 999999988753 1 1 1 122 2 4542 2 4899999999999863 121111 1234
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006212 301 FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 301 i~~~~l~~mK~gailINva 319 (656)
++.+.++.+|++++|.-|.
T Consensus 265 vt~~~l~~a~~~ai~mH~l 283 (328)
T 3grf_A 265 VDDAVMAVTSKRSIFMNCL 283 (328)
T ss_dssp BCHHHHTTSCTTCEEEECS
T ss_pred CCHHHHHhcCCCCEEECCC
Confidence 6888888899999999986
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0071 Score=66.86 Aligned_cols=93 Identities=17% Similarity=0.229 Sum_probs=58.0
Q ss_pred ccccccCCCEEEEEecChhHHHHHHHHhcC-CCEEEEECCCCCh-hH-HHHcCCee--c------CHHHHhccCCEEEEc
Q 006212 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYAPA-DK-ARAVGVEL--V------SFDQALATADFISLH 290 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~~~~~-~~-a~~~g~~~--~------~l~ell~~aDvV~l~ 290 (656)
+.+..+.+++|+|+|.|.+|+.+++.|... |.+|.++|++... +. +...++.. . ++.++++.+|+|+.|
T Consensus 16 ~~~~~l~~k~VlIiGAGgiG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~ 95 (467)
T 2axq_A 16 HIEGRHMGKNVLLLGSGFVAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISL 95 (467)
T ss_dssp -------CEEEEEECCSTTHHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEEC
T ss_pred ccccCCCCCEEEEECChHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEEC
Confidence 456788999999999999999999999976 7899999987422 11 11224321 1 355678899999999
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+|.... .-+ ....++.|..+++++
T Consensus 96 tp~~~~--~~v---~~a~l~~g~~vvd~~ 119 (467)
T 2axq_A 96 IPYTFH--PNV---VKSAIRTKTDVVTSS 119 (467)
T ss_dssp SCGGGH--HHH---HHHHHHHTCEEEECS
T ss_pred Cchhhh--HHH---HHHHHhcCCEEEEee
Confidence 995421 111 112234566666664
|
| >3tpf_A Otcase, ornithine carbamoyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, rossman fold; 2.70A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.11 Score=54.26 Aligned_cols=94 Identities=14% Similarity=0.129 Sum_probs=68.2
Q ss_pred ccC-CCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hhH---H----HHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLV-GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-ADK---A----RAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~-gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~~---a----~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.+. |++|+|||= +++..+++..+..+|++|....|.. + .+. + ++.|.. . .++++.+++||+|..-
T Consensus 142 ~l~~gl~va~vGD~~~va~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~~~~~~d~~eav~~aDvvyt~ 221 (307)
T 3tpf_A 142 MQNGIAKVAFIGDSNNMCNSWLITAAILGFEISIAMPKNYKISPEIWEFAMKQALISGAKISLGYDKFEALKDKDVVITD 221 (307)
T ss_dssp CGGGCCEEEEESCSSHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CCCCCCEEEEEcCCCccHHHHHHHHHHcCCEEEEECCCccCCCHHHHHHHHHHHHHcCCeEEEEcCHHHHhcCCCEEEec
Confidence 467 999999996 5788888888989999999988753 2 221 1 244543 2 4899999999999875
Q ss_pred c--CCCcc----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 291 M--PLNPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~--Plt~~----------T~~li~~~~l~~mK~gailINva 319 (656)
. ....+ ...-++.+.++.+|++++|.-|.
T Consensus 222 ~w~smg~e~~~~~~~~~~~~y~v~~e~l~~a~~~ai~mH~l 262 (307)
T 3tpf_A 222 TWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCL 262 (307)
T ss_dssp CSSCTTGGGGHHHHHHHTGGGCBCHHHHHHSCTTCEEEECS
T ss_pred CcccCCchhhHHHHHHHhcccccCHHHHHhcCCCcEEECCC
Confidence 5 01110 12446888888899999999886
|
| >3gd5_A Otcase, ornithine carbamoyltransferase; structural genomics, NYSGXRC, target 9454P, operon, amino-acid biosynthesis, ARGI biosynthesis; 2.10A {Gloeobacter violaceus} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.095 Score=55.07 Aligned_cols=94 Identities=16% Similarity=0.184 Sum_probs=67.3
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC--C-hh---H----HHHcCC--ee-cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA--P-AD---K----ARAVGV--EL-VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~---~----a~~~g~--~~-~~l~ell~~aDvV~l~~ 291 (656)
.+.|++|++||= +++..+++..+..+|++|....|.. + .+ . +.+.|. .. .++++.+++||+|..-.
T Consensus 154 ~l~glkva~vGD~~rva~Sl~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~a~~~g~~v~~~~d~~eav~~aDvvyt~~ 233 (323)
T 3gd5_A 154 RLAGLKLAYVGDGNNVAHSLLLGCAKVGMSIAVATPEGFTPDPAVSARASEIAGRTGAEVQILRDPFEAARGAHILYTDV 233 (323)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHHTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEECCCcccCCHHHHHHHHHHHHHcCCeEEEECCHHHHhcCCCEEEEec
Confidence 478999999986 6788889988888999999988753 2 21 1 223454 33 38999999999998753
Q ss_pred CCC--c-----c-----ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLN--P-----T-----TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt--~-----~-----T~~li~~~~l~~mK~gailINva 319 (656)
=.. . + ...-++.+.++.+|++++|.-|.
T Consensus 234 wqs~g~~~~~~~~~~~~~~y~vt~ell~~ak~dai~mHcl 273 (323)
T 3gd5_A 234 WTSMGQEAETQHRLQLFEQYQINAALLNCAAAEAIVLHCL 273 (323)
T ss_dssp CC---------CCHHHHTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecCCCcccchHHHHHhhccCCCHHHHhhcCCCcEEECCC
Confidence 111 0 0 12346888888889999988885
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.015 Score=60.92 Aligned_cols=95 Identities=19% Similarity=0.178 Sum_probs=61.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC--ChhHH--HH---------cC--CeecCHHHHhccCCEEEEcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PADKA--RA---------VG--VELVSFDQALATADFISLHM 291 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~--~~~~a--~~---------~g--~~~~~l~ell~~aDvV~l~~ 291 (656)
..++|+|||.|.+|..+|..+...|+ +|..+|... ..... .+ .. +...+-.+.+++||+|+++.
T Consensus 7 ~~~kv~ViGaG~vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d~~a~~~aDvVIiaa 86 (315)
T 3tl2_A 7 KRKKVSVIGAGFTGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSDYADTADSDVVVITA 86 (315)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESCGGGGTTCSEEEECC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCCHHHhCCCCEEEEeC
Confidence 46799999999999999999998888 999999872 11111 10 01 11122246789999999998
Q ss_pred CCCcccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 292 PLNPTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 292 Plt~~T~~l-----i--~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
.. +...++ + |. +.+....|++++++++ ..+|
T Consensus 87 g~-p~kpg~~R~dl~~~N~~i~~~i~~~i~~~~p~a~vlvvs--NPvd 131 (315)
T 3tl2_A 87 GI-ARKPGMSRDDLVATNSKIMKSITRDIAKHSPNAIIVVLT--NPVD 131 (315)
T ss_dssp SC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHH
T ss_pred CC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEECC--ChHH
Confidence 52 222222 1 11 1222346889999997 3444
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.012 Score=59.63 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=54.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+|+|+|+|+||+.+++.+...+.++.+ +|+.... ..|+... ++++++ ++|+|+-+++. ..+. +.+.
T Consensus 4 mkI~ViGaGrMG~~i~~~l~~~~~eLva~~d~~~~~----~~gv~v~~dl~~l~-~~DVvIDft~p-~a~~-----~~~~ 72 (243)
T 3qy9_A 4 MKILLIGYGAMNQRVARLAEEKGHEIVGVIENTPKA----TTPYQQYQHIADVK-GADVAIDFSNP-NLLF-----PLLD 72 (243)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCC------CCSCBCSCTTTCT-TCSEEEECSCH-HHHH-----HHHT
T ss_pred eEEEEECcCHHHHHHHHHHHhCCCEEEEEEecCccc----cCCCceeCCHHHHh-CCCEEEEeCCh-HHHH-----HHHH
Confidence 5799999999999999999876447665 7876532 3566544 788888 99998844431 1122 2333
Q ss_pred cCCCCcEEEEcCCC
Q 006212 308 KMKKGVRIVNVARG 321 (656)
Q Consensus 308 ~mK~gailINvaRg 321 (656)
++.|.-+|-...|
T Consensus 73 -l~~g~~vVigTTG 85 (243)
T 3qy9_A 73 -EDFHLPLVVATTG 85 (243)
T ss_dssp -SCCCCCEEECCCS
T ss_pred -HhcCCceEeCCCC
Confidence 6777766755444
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.017 Score=63.45 Aligned_cols=112 Identities=15% Similarity=0.163 Sum_probs=70.1
Q ss_pred CCCEEEEEecChh--HHHHHHHHhc----CCCEEEEECCCCCh-hHHHHc---------CCee-cCHHHHhccCCEEEEc
Q 006212 228 VGKTLAVMGFGKV--GSEVARRAKG----LGMNVIAHDPYAPA-DKARAV---------GVEL-VSFDQALATADFISLH 290 (656)
Q Consensus 228 ~gktvGIIGlG~I--G~~vA~~lk~----~G~~Vi~~d~~~~~-~~a~~~---------g~~~-~~l~ell~~aDvV~l~ 290 (656)
...+|+|||.|.+ |..++..+.. .| +|..||..... +..... .+.. .++++.++.||||+++
T Consensus 4 ~~~KIaVIGaGs~g~g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~a 82 (450)
T 3fef_A 4 DQIKIAYIGGGSQGWARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIIS 82 (450)
T ss_dssp CCEEEEEETTTCSSHHHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEEC
T ss_pred CCCEEEEECCChhHhHHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEec
Confidence 4569999999997 5788877653 36 99999987421 211111 1222 3799999999999999
Q ss_pred cCCC-----------ccccccccH------------------------HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 291 MPLN-----------PTTSKIFND------------------------ETFAKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 291 ~Plt-----------~~T~~li~~------------------------~~l~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
++.. |.-.++... +.+....|+++++|++---=+-..++.+.+..
T Consensus 83 irvG~~~~~~~De~ip~k~G~~~~vget~g~GGi~~alr~~~i~~~i~~~i~~~~p~a~~i~~tNPvdi~t~~~~k~~p~ 162 (450)
T 3fef_A 83 ILPGSLDDMEVDVHLPERCGIYQSVGDTVGPGGIIRGLRAVPIFAEIARAIRDYAPESWVINYTNPMSVCTRVLYKVFPG 162 (450)
T ss_dssp CCSSCHHHHHHHHHGGGGGTCCCSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECCSSHHHHHHHHHHHCTT
T ss_pred cccCCcccchhhhhhhhccCccccchhhcCCchhhcccccHHHHHHHHHHHHHHCCCeEEEEecCchHHHHHHHHHHCCC
Confidence 9642 333333211 22333468999999975332334455444444
Q ss_pred CCeEE
Q 006212 336 GVVAQ 340 (656)
Q Consensus 336 g~i~g 340 (656)
.++.|
T Consensus 163 ~rviG 167 (450)
T 3fef_A 163 IKAIG 167 (450)
T ss_dssp CEEEE
T ss_pred CCEEE
Confidence 56666
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.01 Score=62.16 Aligned_cols=110 Identities=18% Similarity=0.185 Sum_probs=65.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCCh--hHHHHc--CC------eec-CHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA--DKARAV--GV------ELV-SFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~--~~a~~~--g~------~~~-~l~ell~~aDvV~l~~Plt~ 295 (656)
..+|+|||.|.+|.++|..+...|. +|..||..... ..+.++ +. ... +-.+.+++||+|+++++. +
T Consensus 7 ~~KI~IiGaG~vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~-p 85 (318)
T 1y6j_A 7 RSKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA-N 85 (318)
T ss_dssp CCCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC--
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCC-C
Confidence 3589999999999999999987777 99999976421 112221 11 111 225669999999999984 3
Q ss_pred cccccc-------c----H---HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEE
Q 006212 296 TTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li-------~----~---~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA 341 (656)
...++- | . +.+....|++++++++ ..+| ...+.+. +...++.|.
T Consensus 86 ~k~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~~~~~~k~s~~p~~rviG~ 147 (318)
T 1y6j_A 86 RKPGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVS--NPVDIITYMIQKWSGLPVGKVIGS 147 (318)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECS--SSHHHHHHHHHHHHTCCTTTEEEC
T ss_pred CCCCcCHHHHHHhhHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHcCCCHHHEecc
Confidence 322221 1 0 1222236899999973 4444 3333332 344577776
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.016 Score=59.87 Aligned_cols=102 Identities=19% Similarity=0.293 Sum_probs=64.5
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEE-EECCCCChhHHHHcCCeec-CHHHHhc--cCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Plt~~T~~li~~ 303 (656)
..+|+|+|+ |++|+.+++.++..|++++ .+||....+ ...|+... +++++.. ..|++++++|. +.....+ .
T Consensus 7 ~~rVaViG~sG~~G~~~~~~l~~~g~~~V~~V~p~~~g~--~~~G~~vy~sl~el~~~~~~D~viI~tP~-~~~~~~~-~ 82 (288)
T 2nu8_A 7 NTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGT--THLGLPVFNTVREAVAATGATASVIYVPA-PFCKDSI-L 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCG-GGHHHHH-H
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCeEEEEeCCCcccc--eeCCeeccCCHHHHhhcCCCCEEEEecCH-HHHHHHH-H
Confidence 468999999 9999999999998899855 578753211 13466544 7999988 89999999993 2222232 2
Q ss_pred HHHhcCCCCcEEEEcCCCc-hhcHHHHHHhHhcC
Q 006212 304 ETFAKMKKGVRIVNVARGG-VIDEEALVRALDSG 336 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~-ivde~aL~~aL~~g 336 (656)
+.++ ..... +|..+.|- .-+.+.+.++.++.
T Consensus 83 ea~~-~Gi~~-iVi~t~G~~~~~~~~l~~~A~~~ 114 (288)
T 2nu8_A 83 EAID-AGIKL-IITITEGIPTLDMLTVKVKLDEA 114 (288)
T ss_dssp HHHH-TTCSE-EEECCCCCCHHHHHHHHHHHHHH
T ss_pred HHHH-CCCCE-EEEECCCCCHHHHHHHHHHHHHc
Confidence 2222 22232 34444442 22344676666553
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=95.83 E-value=0.012 Score=61.99 Aligned_cols=62 Identities=19% Similarity=0.307 Sum_probs=47.1
Q ss_pred EEEEEecChhHH-HHHHHHhcC-CCEEE-EECCCCChhHHHH---cCCee-cCHHHHhcc--CCEEEEccC
Q 006212 231 TLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAPADKARA---VGVEL-VSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~-~vA~~lk~~-G~~Vi-~~d~~~~~~~a~~---~g~~~-~~l~ell~~--aDvV~l~~P 292 (656)
+|||||+|.||+ ..+..++.. +++|. ++|+......+.+ .++.. .++++++.+ .|+|++|+|
T Consensus 4 rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (349)
T 3i23_A 4 KMGFIGFGKSANRYHLPYVMIRETLEVKTIFDLHVNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTP 74 (349)
T ss_dssp EEEEECCSHHHHHTTHHHHTTCTTEEEEEEECTTCCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSC
T ss_pred EEEEEccCHHHHHHHHHHHhhCCCeEEEEEECCCHHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCC
Confidence 799999999999 567767765 78876 5787743344444 35544 489999986 899999999
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.0085 Score=65.69 Aligned_cols=110 Identities=16% Similarity=0.186 Sum_probs=70.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-----hhHHHHcCCeec---CHHHHhcc-CCEEEEccCCCcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-----ADKARAVGVELV---SFDQALAT-ADFISLHMPLNPT 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-----~~~a~~~g~~~~---~l~ell~~-aDvV~l~~Plt~~ 296 (656)
++.||+|.|||+|..|.++|+.|+..|++|.++|.... .+..++.|+.+. ..++++.+ +|+|++.--..+.
T Consensus 6 ~~~~k~v~viG~G~sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~ 85 (451)
T 3lk7_A 6 TFENKKVLVLGLARSGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYN 85 (451)
T ss_dssp TTTTCEEEEECCTTTHHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTT
T ss_pred hcCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCC
Confidence 56899999999999999999999999999999997531 133456788653 34456676 9999885332222
Q ss_pred c----------cccccH-HHHhcCCCCcEEEEcC-CCchhcHHHHHHhHhc
Q 006212 297 T----------SKIFND-ETFAKMKKGVRIVNVA-RGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T----------~~li~~-~~l~~mK~gailINva-Rg~ivde~aL~~aL~~ 335 (656)
. ..++.+ +.+..+.+..+|-=+| .|+--...-+...|+.
T Consensus 86 ~p~~~~a~~~gi~v~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~ 136 (451)
T 3lk7_A 86 NPMVKKALEKQIPVLTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNA 136 (451)
T ss_dssp SHHHHHHHHTTCCEECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHCCCcEEeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 1 113343 2333333344443344 5776555555556654
|
| >3d6n_B Aspartate carbamoyltransferase; reactor, chamber, pores, internal cavity, hydrolase, metal-B pyrimidine biosynthesis, hydrolase-transferase; HET: FLC; 2.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.056 Score=56.00 Aligned_cols=66 Identities=18% Similarity=0.221 Sum_probs=53.8
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCee-cCHHHHhccCCEEEEccCC
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+.|++|+++|= +++..+++..+..+|++|....|.. +.. ..+.|+.. .++++.+++||+|.. +-.
T Consensus 143 ~l~gl~va~vGDl~~~rva~Sl~~~~~~~g~~v~~~~P~~~~p~~-~~~~g~~~~~d~~eav~~aDvvy~-~~~ 214 (291)
T 3d6n_B 143 EVKDLRVLYVGDIKHSRVFRSGAPLLNMFGAKIGVCGPKTLIPRD-VEVFKVDVFDDVDKGIDWADVVIW-LRL 214 (291)
T ss_dssp CCTTCEEEEESCCTTCHHHHHHHHHHHHTTCEEEEESCGGGSCTT-GGGGCEEEESSHHHHHHHCSEEEE-CCC
T ss_pred CcCCcEEEEECCCCCCchHHHHHHHHHHCCCEEEEECCchhCCch-HHHCCCEEEcCHHHHhCCCCEEEE-eCc
Confidence 478999999997 8999999999999999999988753 222 23457654 489999999999998 664
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0087 Score=63.15 Aligned_cols=64 Identities=16% Similarity=0.229 Sum_probs=46.3
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEE-EECCCCChhHHHHcCCe-ecCHHHHhcc--CCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVI-AHDPYAPADKARAVGVE-LVSFDQALAT--ADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi-~~d~~~~~~~a~~~g~~-~~~l~ell~~--aDvV~l~~Pl 293 (656)
.+|||||+|.||+. .+..++.. +++|. ++|+......+...++. +.++++++.+ .|+|++|+|.
T Consensus 8 ~rvgiiG~G~~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 77 (352)
T 3kux_A 8 IKVGLLGYGYASKTFHAPLIMGTPGLELAGVSSSDASKVHADWPAIPVVSDPQMLFNDPSIDLIVIPTPN 77 (352)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHTTCSSCCEESCHHHHHHCSSCCEEEECSCT
T ss_pred ceEEEECCCHHHHHHHHHHHhhCCCcEEEEEECCCHHHHHhhCCCCceECCHHHHhcCCCCCEEEEeCCh
Confidence 47999999999997 78888766 78876 47876422111112343 3489999976 9999999993
|
| >3aog_A Glutamate dehydrogenase; NAD(H), oxidoreducta; HET: GLU; 2.10A {Thermus thermophilus HB27} PDB: 3aoe_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.14 Score=56.03 Aligned_cols=95 Identities=20% Similarity=0.300 Sum_probs=66.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHHH----HcC-------CeecCHHHHhc-
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKAR----AVG-------VELVSFDQALA- 282 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a~----~~g-------~~~~~l~ell~- 282 (656)
|.++.|+||.|.|+|++|+.+|+.|...|.+|++ |||.- ..+... +.| .+.++.++++.
T Consensus 230 g~~l~g~~vaVqGfGnVG~~~a~~L~e~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~i~~y~~a~~i~~~ei~~~ 309 (440)
T 3aog_A 230 GLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGIDPYDLLRHVQEFGGVRGYPKAEPLPAADFWGL 309 (440)
T ss_dssp TCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHTSSSTTCTTSEECCHHHHTTC
T ss_pred CCCccCCEEEEeccCHHHHHHHHHHHHCCCEEEEEEcCCcEEECCCCCCHHHHHHHHHhcCCcccCCCceEcCchhhhcC
Confidence 5679999999999999999999999999999984 34432 222211 122 24456677664
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+||+++-|.+. +.++.+....++ -.+|+-.+-+.+-
T Consensus 310 ~~DIlvPcA~~-----n~i~~~na~~l~-ak~VvEgAN~p~t 345 (440)
T 3aog_A 310 PVEFLVPAALE-----KQITEQNAWRIR-ARIVAEGANGPTT 345 (440)
T ss_dssp CCSEEEECSSS-----SCBCTTTGGGCC-CSEEECCSSSCBC
T ss_pred CCcEEEecCCc-----CccchhhHHHcC-CcEEEecCccccC
Confidence 79999998763 345666666663 4566777777764
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.015 Score=61.44 Aligned_cols=89 Identities=22% Similarity=0.341 Sum_probs=65.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-c------CHHHHh-ccCCEEEEccCCC-ccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-V------SFDQAL-ATADFISLHMPLN-PTT 297 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~------~l~ell-~~aDvV~l~~Plt-~~T 297 (656)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|... + ++.+.+ ...|+|+-+++.+ +.+
T Consensus 179 ~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~~D~vid~~g~~~~~~ 258 (360)
T 1piw_A 179 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDID 258 (360)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCCEEEcCcCchHHHHHhhcCCCEEEECCCCCcHHH
Confidence 48899999999999999999999999999998765 566777888743 2 222222 3689999988742 111
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
+ ...+..|+++..++.++.
T Consensus 259 ---~-~~~~~~l~~~G~iv~~g~ 277 (360)
T 1piw_A 259 ---F-NIMPKAMKVGGRIVSISI 277 (360)
T ss_dssp ---T-TTGGGGEEEEEEEEECCC
T ss_pred ---H-HHHHHHhcCCCEEEEecC
Confidence 1 344566888888888874
|
| >1xyg_A Putative N-acetyl-gamma-glutamyl-phosphate reduct; structural genomics, protein structure initiative, CENT eukaryotic structural genomics; 2.19A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.1 PDB: 2q49_A 2cvo_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.019 Score=61.27 Aligned_cols=85 Identities=18% Similarity=0.278 Sum_probs=55.1
Q ss_pred CCEEEEEe-cChhHHHHHHHHhcCC-CEEEEECCCCCh--hHHHH----cC-----CeecCHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPA--DKARA----VG-----VELVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~d~~~~~--~~a~~----~g-----~~~~~l~ell~~aDvV~l~~Plt~ 295 (656)
..+|||+| +|.||+.+++.|.... +++.+....... ..... .+ +...+ ++.+..+|+|++|+|...
T Consensus 16 ~~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~~~~~g~~~~~~~~~~~~~v~~dl~~~~-~~~~~~vDvVf~atp~~~ 94 (359)
T 1xyg_A 16 DIRIGLLGASGYTGAEIVRLLANHPHFQVTLMTADRKAGQSMESVFPHLRAQKLPTLVSVK-DADFSTVDAVFCCLPHGT 94 (359)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHTCSSEEEEEEBCSTTTTSCHHHHCGGGTTSCCCCCBCGG-GCCGGGCSEEEECCCTTT
T ss_pred CcEEEEECcCCHHHHHHHHHHHcCCCcEEEEEeCchhcCCCHHHhCchhcCcccccceecc-hhHhcCCCEEEEcCCchh
Confidence 35899999 9999999999998764 687776432211 11111 11 11223 556678999999999442
Q ss_pred cccccccHHHHhcCCCCcEEEEcCC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaR 320 (656)
..+.....+.|+.+||.+.
T Consensus 95 ------s~~~a~~~~aG~~VId~sa 113 (359)
T 1xyg_A 95 ------TQEIIKELPTALKIVDLSA 113 (359)
T ss_dssp ------HHHHHHTSCTTCEEEECSS
T ss_pred ------HHHHHHHHhCCCEEEECCc
Confidence 2333333377999999974
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.023 Score=59.36 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=47.9
Q ss_pred CEEEEEecChhHH-HHHHHHhcCCCEEE-EECCCCC--hhHHHHc-CCe-ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGS-EVARRAKGLGMNVI-AHDPYAP--ADKARAV-GVE-LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~-~vA~~lk~~G~~Vi-~~d~~~~--~~~a~~~-g~~-~~~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+|.+|. .++..++..+++|. ++|++.. ...+... ++. +.+++++++ +.|+|++|+|
T Consensus 5 ~rvgiiG~G~~~~~~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 75 (336)
T 2p2s_A 5 IRFAAIGLAHNHIYDMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVI 75 (336)
T ss_dssp CEEEEECCSSTHHHHHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSC
T ss_pred cEEEEECCChHHHHHhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCC
Confidence 4799999999996 67777776689975 5788752 3344555 444 358999997 6999999999
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0081 Score=65.55 Aligned_cols=64 Identities=20% Similarity=0.240 Sum_probs=48.7
Q ss_pred CEEEEEecChhHH-HHHHHHhcC-CCEEE-EECCCCCh--hHHHHcCCe------ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGS-EVARRAKGL-GMNVI-AHDPYAPA--DKARAVGVE------LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~-~vA~~lk~~-G~~Vi-~~d~~~~~--~~a~~~g~~------~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+ .+++.++.. ++++. ++|+.... ..+...|+. +.++++++. +.|+|++|+|.
T Consensus 84 irigiIG~G~~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~ 160 (433)
T 1h6d_A 84 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPN 160 (433)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCG
T ss_pred eEEEEECCcHHHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCc
Confidence 4799999999997 899988865 67765 67887522 234455663 348999987 79999999993
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.017 Score=64.03 Aligned_cols=98 Identities=21% Similarity=0.347 Sum_probs=69.6
Q ss_pred ccccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccC
Q 006212 224 GVSLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 224 g~~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~P 292 (656)
+..+.|++|+|+|+-- =...+++.|+..|.+|.+|||+... . ..+.+ .++++.++.||.|+++++
T Consensus 348 ~~~~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~g~~V~~~DP~~~~--~--~~~~~~~~~~~~~~~ad~vvi~t~ 423 (478)
T 3g79_A 348 GKKMDGSKVAMLGWAFIKDSDDARNTPSEPYRDLCLKAGASVMVHDPYVVN--Y--PGVEISDNLEEVVRNADAIVVLAG 423 (478)
T ss_dssp TCCSTTCEEEEECSSSSTTCSCCTTCTHHHHHHHHHHHTCEEEEECSSCCC--B--TTBCEESCHHHHHTTCSEEEECSC
T ss_pred ccCCCCCEEEEEeeecCCCCcchhcCcHHHHHHHHHHCCCEEEEECCCccc--c--cCcceecCHHHHHhcCCEEEEecC
Confidence 4578999999999852 3578999999999999999998752 1 12233 489999999999999987
Q ss_pred CCccccccccHH-HHhcCC-CCcEEEEcCCCchhcHHHH
Q 006212 293 LNPTTSKIFNDE-TFAKMK-KGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 293 lt~~T~~li~~~-~l~~mK-~gailINvaRg~ivde~aL 329 (656)
-++-+. ++-+ ....|+ +..+|+|+ |+ +.|.+.+
T Consensus 424 -~~~f~~-~d~~~~~~~~~~~~~~i~D~-rn-~~~~~~~ 458 (478)
T 3g79_A 424 -HSAYSS-LKADWAKKVSAKANPVIIDG-RN-VIEPDEF 458 (478)
T ss_dssp -CHHHHS-CCHHHHHHHHCCSSCEEEES-SS-CSCHHHH
T ss_pred -CHHHHh-hhHHHHHHHhccCCCEEEEC-CC-CCCHHHH
Confidence 333332 3433 334577 47899995 54 3465544
|
| >3sds_A Ornithine carbamoyltransferase, mitochondrial; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.80A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.13 Score=54.64 Aligned_cols=96 Identities=19% Similarity=0.227 Sum_probs=65.9
Q ss_pred ccccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC---Chh---HHHHc------C--Cee-cCHHHHhccCCEE
Q 006212 224 GVSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA---PAD---KARAV------G--VEL-VSFDQALATADFI 287 (656)
Q Consensus 224 g~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~---~~~---~a~~~------g--~~~-~~l~ell~~aDvV 287 (656)
...|.|++|+|||=+ ++..+++..+..+|++|.+..|.. +.+ .+++. | +.. .++++.+++||+|
T Consensus 183 ~~~l~glkva~vGD~~nva~Sl~~~l~~lG~~v~~~~P~~~~~~~~i~~~~~~~a~~~~~g~~~~~~~d~~eav~~aDVv 262 (353)
T 3sds_A 183 SLGLEGLKIAWVGDANNVLFDLAIAATKMGVNVAVATPRGYEIPSHIVELIQKAREGVQSPGNLTQTTVPEVAVKDADVI 262 (353)
T ss_dssp CCSCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHTTCSSCCCEEEESCHHHHTTTCSEE
T ss_pred ccccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHhhhhccCCCeEEEECCHHHHhcCCCEE
Confidence 345899999999976 578888888889999999988753 222 12221 3 233 4899999999999
Q ss_pred EEcc--CCCcc----------ccccccHHHHhc--CCCCcEEEEcC
Q 006212 288 SLHM--PLNPT----------TSKIFNDETFAK--MKKGVRIVNVA 319 (656)
Q Consensus 288 ~l~~--Plt~~----------T~~li~~~~l~~--mK~gailINva 319 (656)
..-+ +...+ ....++.+.++. +|++++|.-|.
T Consensus 263 ytd~w~smg~E~~~~~r~~~~~~y~vt~ell~~~~ak~~ai~MHcL 308 (353)
T 3sds_A 263 VTDTWISMGQETEKIKRLEAFKDFKVTSELAKRGGAKENWKFMHCL 308 (353)
T ss_dssp EECCC--------CHHHHHHTTTCCBCHHHHHHHTCCTTCEEEECS
T ss_pred EeCCccCCchhhHHHHHHHHhhCceecHHHHhhcccCCCcEEECCC
Confidence 8743 22211 113467777777 78888888875
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.029 Score=58.22 Aligned_cols=93 Identities=17% Similarity=0.081 Sum_probs=62.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HH---H----c--CC--eec-CHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--AR---A----V--GV--ELV-SFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~---~----~--g~--~~~-~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||.|.+|.++|..+...|. +|..||....... +. + . .. ... + .+.+++||+|+++.+.
T Consensus 1 MkI~ViGaG~vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~ 79 (294)
T 1oju_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGL 79 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCC
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCC
Confidence 479999999999999999987776 9999998652111 11 1 1 11 222 5 7889999999999873
Q ss_pred Ccccccc-----c--cH-------HHHhcCCCCcEEEEcCCCchhcH
Q 006212 294 NPTTSKI-----F--ND-------ETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 294 t~~T~~l-----i--~~-------~~l~~mK~gailINvaRg~ivde 326 (656)
+...++ + |. +.+....|++++++++ ..+|.
T Consensus 80 -~~kpG~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvs--NPvd~ 123 (294)
T 1oju_A 80 -ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDV 123 (294)
T ss_dssp -CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHH
T ss_pred -CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEeC--CcchH
Confidence 322222 1 11 1234467899999997 55553
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0075 Score=63.94 Aligned_cols=91 Identities=11% Similarity=0.068 Sum_probs=62.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC----ChhHHHHcCCeecC---HHHHh----ccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA----PADKARAVGVELVS---FDQAL----ATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~----~~~~a~~~g~~~~~---l~ell----~~aDvV~l~~Plt 294 (656)
.+.|++|.|+|.|.||..+++.++.+|.+|++.++.. ..+.++++|+..++ +.+.+ ...|+|+-++...
T Consensus 178 ~~~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~~~~~~~d~vid~~g~~ 257 (366)
T 2cdc_A 178 TLNCRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRREPTEVEQTVIEETKTNYYNSSNGYDKLKDSVGKFDVIIDATGAD 257 (366)
T ss_dssp SSTTCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSCCCHHHHHHHHHHTCEEEECTTCSHHHHHHHCCEEEEEECCCCC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCccchHHHHHHHHhCCceechHHHHHHHHHhCCCCCEEEECCCCh
Confidence 5679999999999999999999999999999998764 23455667764431 11111 3478888777632
Q ss_pred ccccccccHHHHhcCCCCcEEEEcCC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINvaR 320 (656)
... + ...+..|+++..+++++-
T Consensus 258 ~~~---~-~~~~~~l~~~G~iv~~g~ 279 (366)
T 2cdc_A 258 VNI---L-GNVIPLLGRNGVLGLFGF 279 (366)
T ss_dssp THH---H-HHHGGGEEEEEEEEECSC
T ss_pred HHH---H-HHHHHHHhcCCEEEEEec
Confidence 211 0 345566777778887763
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.033 Score=61.62 Aligned_cols=101 Identities=22% Similarity=0.266 Sum_probs=69.8
Q ss_pred ccccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHc------------CCeec-CHHHH
Q 006212 224 GVSLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAV------------GVELV-SFDQA 280 (656)
Q Consensus 224 g~~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~------------g~~~~-~l~el 280 (656)
+..+.|++|+|+|+-- =...+++.|...|.+|.+|||....+..... .+.++ ++++.
T Consensus 323 ~~~~~~~~v~vlGlafK~~~dD~R~Sp~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 402 (478)
T 2y0c_A 323 GEDLTGRTFAIWGLAFKPNTDDMREAPSRELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQA 402 (478)
T ss_dssp CSCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHH
T ss_pred cccCCCCEEEEEecccCCCCCccccChHHHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHH
Confidence 4578999999999853 4567999999999999999998633211212 24444 68899
Q ss_pred hccCCEEEEccCCCccccccccHHHH-hcCCCCcEEEEcCCCchhcHHHH
Q 006212 281 LATADFISLHMPLNPTTSKIFNDETF-AKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~l-~~mK~gailINvaRg~ivde~aL 329 (656)
++.||+|++++.-. +-+. ++-+.+ ..|+ ..+|+|+ |+ +.+.+.+
T Consensus 403 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~-~~~i~D~-r~-~~~~~~~ 447 (478)
T 2y0c_A 403 ARDADALVIVTEWK-IFKS-PDFVALGRLWK-TPVIFDG-RN-LYEPETM 447 (478)
T ss_dssp TTTCSEEEECSCCG-GGGS-CCHHHHHTTCS-SCEEEES-SC-CSCHHHH
T ss_pred HhCCCEEEEecCCh-Hhhc-cCHHHHHhhcC-CCEEEEC-CC-CCCHHHH
Confidence 99999999999843 3332 344444 4455 4789997 33 4455443
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.01 Score=62.85 Aligned_cols=62 Identities=15% Similarity=0.165 Sum_probs=47.2
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCChhHHHHc-CCee-cCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVEL-VSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~-g~~~-~~l~ell~~--aDvV~l~~P 292 (656)
.+|||||+|.||+. .+..++.. +++|.+ +|+.... .+.+. ++.. .++++++.+ .|+|++|+|
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~-~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 74 (362)
T 3fhl_A 6 IKTGLAAFGMSGQVFHAPFISTNPHFELYKIVERSKEL-SKERYPQASIVRSFKELTEDPEIDLIVVNTP 74 (362)
T ss_dssp EEEEESCCSHHHHHTTHHHHHHCTTEEEEEEECSSCCG-GGTTCTTSEEESCSHHHHTCTTCCEEEECSC
T ss_pred eEEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHH-HHHhCCCCceECCHHHHhcCCCCCEEEEeCC
Confidence 47999999999997 77777765 788864 6877533 33334 4443 489999986 999999999
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.61 E-value=0.011 Score=62.31 Aligned_cols=90 Identities=13% Similarity=0.051 Sum_probs=59.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHH--cC--------Cee-cCHHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARA--VG--------VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~--~g--------~~~-~~l~ell~~aDvV~l~~P 292 (656)
..++|+|||.|.||..+|..+...|+ +|..+|....... +.+ .+ +.. .+.++ +++||+|+++..
T Consensus 20 ~~~kV~ViGaG~vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG 98 (330)
T 3ldh_A 20 SYNKITVVGCDAVGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAG 98 (330)
T ss_dssp CCCEEEEESTTHHHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCC
Confidence 56899999999999999999987776 9999998642111 110 01 111 25665 999999999876
Q ss_pred CCccccc-----cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 293 LNPTTSK-----IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt~~T~~-----li--~~-------~~l~~mK~gailINva 319 (656)
. +...+ ++ |. +.+....|++++++++
T Consensus 99 ~-p~kpG~tR~dll~~N~~I~k~i~~~I~k~~P~a~ilvvt 138 (330)
T 3ldh_A 99 A-RQQEGESRLNLVQRNVNIFKFIIPNIVKHSPDCLKELHP 138 (330)
T ss_dssp C-CCCSSCCTTGGGHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred C-CCCCCCCHHHHHHhhHHHHHHHHHHHHhhCCCceEEeCC
Confidence 3 22222 22 11 1233457899999997
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.031 Score=58.81 Aligned_cols=91 Identities=15% Similarity=0.252 Sum_probs=59.2
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhH--H---HH------cCCe--e-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK--A---RA------VGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~--a---~~------~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
...++|+|||.|.+|..+|..+...|+ +|..+|....... + .+ .... . .+. +.+++||+|+++.
T Consensus 5 m~~~kI~viGaG~vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaa 83 (324)
T 3gvi_A 5 MARNKIALIGSGMIGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTA 83 (324)
T ss_dssp -CCCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECC
T ss_pred CcCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEcc
Confidence 346799999999999999999987777 9999998763211 1 11 1222 2 244 7899999999998
Q ss_pred CCCcccccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 006212 292 PLNPTTSKI-----F--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T~~l-----i--~~-------~~l~~mK~gailINva 319 (656)
+. +...++ + |. ..+....|++++++++
T Consensus 84 g~-p~k~G~~R~dl~~~N~~i~~~i~~~i~~~~p~a~iivvt 124 (324)
T 3gvi_A 84 GV-PRKPGMSRDDLLGINLKVMEQVGAGIKKYAPEAFVICIT 124 (324)
T ss_dssp SC-CCC-----CHHHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred Cc-CCCCCCCHHHHHHhhHHHHHHHHHHHHHHCCCeEEEecC
Confidence 63 322222 1 11 1222245788999987
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.032 Score=60.99 Aligned_cols=84 Identities=20% Similarity=0.264 Sum_probs=63.7
Q ss_pred ccCCCEEEEEecCh----------hHHHHHHHHhcC-CCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGK----------VGSEVARRAKGL-GMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~----------IG~~vA~~lk~~-G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt 294 (656)
.+.|++|+|+|+-- -...+++.|+.. |.+|.+|||+...+ ....++++.++.||.|+++++-
T Consensus 312 ~~~~~~v~vlGlafK~~tdD~ReSpa~~i~~~L~~~~g~~V~~~DP~~~~~------~~~~~~~~~~~~ad~vvi~t~~- 384 (431)
T 3ojo_A 312 ALSGNKVTVFGLTYKGDVDDIRESPAFDIYELLNQEPDIEVCAYDPHVELD------FVEHDMSHAVKDASLVLILSDH- 384 (431)
T ss_dssp HSSCCEEEEECCCSSTTSCCCTTCHHHHHHHHHHHSTTCEEEEECSSCCCT------TBCSTTHHHHTTCSEEEECSCC-
T ss_pred hcCCCEEEEEeeeeCCCCcchhcChHHHHHHHHHhhcCCEEEEECCCcccc------cccCCHHHHHhCCCEEEEecCC-
Confidence 47899999999852 367899999998 99999999987432 2335789999999999999983
Q ss_pred ccccccccHHHHhcCCCCcEEEEc
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINv 318 (656)
++-+. ++-+.+..|+ +.+|+|+
T Consensus 385 ~~f~~-~d~~~~~~~~-~~~i~D~ 406 (431)
T 3ojo_A 385 SEFKN-LSDSHFDKMK-HKVIFDT 406 (431)
T ss_dssp GGGTS-CCGGGGTTCS-SCEEEES
T ss_pred HHHhc-cCHHHHHhCC-CCEEEEC
Confidence 33333 3444456676 6789996
|
| >3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.014 Score=62.39 Aligned_cols=64 Identities=25% Similarity=0.407 Sum_probs=46.1
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcC--C---eecC---HHHHhccCCEEEE
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVG--V---ELVS---FDQALATADFISL 289 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g--~---~~~~---l~ell~~aDvV~l 289 (656)
..+.||+|+|+|.|.+|+.+++.++.+|++|+++|++.... +.+.. . .+.+ +.++++++|+|+.
T Consensus 8 ~~~~~~~IlIlG~G~lg~~la~aa~~lG~~viv~d~~~~~p-~~~~ad~~~~~~~~d~~~l~~~~~~~dvi~~ 79 (377)
T 3orq_A 8 KLKFGATIGIIGGGQLGKMMAQSAQKMGYKVVVLDPSEDCP-CRYVAHEFIQAKYDDEKALNQLGQKCDVITY 79 (377)
T ss_dssp CCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCTTCT-TGGGSSEEEECCTTCHHHHHHHHHHCSEEEE
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCCh-hhhhCCEEEECCCCCHHHHHHHHHhCCccee
Confidence 34679999999999999999999999999999999875211 11111 1 1112 5567788898744
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.01 Score=63.56 Aligned_cols=63 Identities=14% Similarity=0.300 Sum_probs=49.6
Q ss_pred CEEEEEecC-hhHHHHHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCCee-cCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFG-KVGSEVARRAKGL-GMNVIA-HDPYAP--ADKARAVGVEL-VSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG-~IG~~vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~~~-~~l~ell~~--aDvV~l~~P 292 (656)
.+|||||+| .+|...+..++.. ++++.+ +|+... ...+.+.|+.. .++++++++ .|+|++++|
T Consensus 3 ~rigiiG~G~~~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp 73 (387)
T 3moi_A 3 IRFGICGLGFAGSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASP 73 (387)
T ss_dssp EEEEEECCSHHHHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSC
T ss_pred eEEEEEeCCHHHHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCC
Confidence 379999999 9999999998865 678764 788752 23345567754 489999975 999999999
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.022 Score=59.21 Aligned_cols=63 Identities=19% Similarity=0.308 Sum_probs=47.8
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEE-ECCCCChhHH-HHc-CCe-ecCHHHHh----------ccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA-HDPYAPADKA-RAV-GVE-LVSFDQAL----------ATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~-~d~~~~~~~a-~~~-g~~-~~~l~ell----------~~aDvV~l~~P 292 (656)
.++||||+ |.||+..++.++..+.++.+ +|++.....+ ... +.. +.++++++ .+.|+|++|+|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP 81 (312)
T 3o9z_A 4 TRFALTGLAGYIAPRHLKAIKEVGGVLVASLDPATNVGLVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASP 81 (312)
T ss_dssp CEEEEECTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSC
T ss_pred eEEEEECCChHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCC
Confidence 58999999 78999999999988888765 7887643222 222 333 34888887 67999999999
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.01 Score=63.88 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=47.6
Q ss_pred EEEEEecChhHHHHHHHHhcC---------CCEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL---------GMNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~---------G~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 292 (656)
+|||||+|.||+..++.++.. +.+|.+ +|++.. ...+++.|+. +.+++++++ +.|+|++|+|
T Consensus 28 rvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp 105 (412)
T 4gqa_A 28 NIGLIGSGFMGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSP 105 (412)
T ss_dssp EEEEECCSHHHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSC
T ss_pred eEEEEcCcHHHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCC
Confidence 799999999999988887743 457665 688752 2345667774 358999996 5899999999
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.026 Score=58.80 Aligned_cols=62 Identities=19% Similarity=0.247 Sum_probs=46.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHH--HH--c-------C--Cee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RA--V-------G--VEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a--~~--~-------g--~~~-~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|+ +|..+|........ .+ . . +.. .+. +.+++||+|+++++
T Consensus 3 ~kI~VIGaG~vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g 79 (309)
T 1ur5_A 3 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSG 79 (309)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCC
Confidence 589999999999999999988886 89999976532111 11 1 1 122 356 67899999999986
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.016 Score=60.63 Aligned_cols=110 Identities=15% Similarity=0.071 Sum_probs=67.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCCh-h-HHHH--c-------CCee-cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPA-D-KARA--V-------GVEL-VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~-~-~a~~--~-------g~~~-~~l~ell~~aDvV~l~~Plt 294 (656)
..+|+|||.|.+|.++|..+...| -+|..||..... + .+.+ . .+.. .+..+.+++||+|+++.+..
T Consensus 6 ~~KI~IIGaG~vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 6 GNKVVLIGNGAVGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 468999999999999999988656 489999976311 1 1111 0 1111 14467799999999999743
Q ss_pred ccccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEE
Q 006212 295 PTTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQA 341 (656)
Q Consensus 295 ~~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA 341 (656)
...++- |. +.+....|++++++++ ..+| ...+.+. +...++.|.
T Consensus 86 -~~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~t--NPv~~~t~~~~k~~~~p~~rviG~ 147 (317)
T 3d0o_A 86 -QKPGETRLDLVSKNLKIFKSIVGEVMASKFDGIFLVAT--NPVDILAYATWKFSGLPKERVIGS 147 (317)
T ss_dssp -CCTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSEEEECS--SSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred -CCCCCcHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEec--CcHHHHHHHHHHHhCCCHHHEEec
Confidence 222221 11 1233347899999975 4444 3333332 333466665
|
| >2tmg_A Protein (glutamate dehydrogenase); metabolic role, mutant, oxidoreductase; 2.90A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.1 PDB: 1b26_A 1b3b_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.26 Score=53.50 Aligned_cols=96 Identities=24% Similarity=0.309 Sum_probs=65.1
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhc-CCCEEEE--------ECCCC-ChhHHH----HcC-------CeecCHHHHh
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKG-LGMNVIA--------HDPYA-PADKAR----AVG-------VELVSFDQAL 281 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~-~G~~Vi~--------~d~~~-~~~~a~----~~g-------~~~~~l~ell 281 (656)
.|.++.|+++.|.|+|++|+..|+.|.. .|.+|++ |||.- ..+... +.| .+.++.++++
T Consensus 203 ~g~~l~g~~vaVqG~GnVG~~~a~~L~e~~GakvVavsD~~G~i~dp~Gld~~~l~~~~~~~g~l~~y~~a~~~~~~eil 282 (415)
T 2tmg_A 203 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL 282 (415)
T ss_dssp TTCCTTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEECTTCCCHHHHHHHHHHSSCSTTCSSSEEECHHHHT
T ss_pred cCCCcCCCEEEEECCcHHHHHHHHHHHHhcCCEEEEEEeCCCeEECCCCCCHHHHHHHHHhhCCcccCCCceEcCchhhh
Confidence 3568999999999999999999999998 9999984 34421 222111 112 2344566765
Q ss_pred c-cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 282 A-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 282 ~-~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
. +||+++-|.+. +.++.+....++ ..+|+-.+-+.+-
T Consensus 283 ~~~~DIliP~A~~-----n~i~~~~a~~l~-ak~V~EgAN~p~t 320 (415)
T 2tmg_A 283 ELDVDILVPAALE-----GAIHAGNAERIK-AKAVVEGANGPTT 320 (415)
T ss_dssp TCSCSEEEECSST-----TSBCHHHHTTCC-CSEEECCSSSCBC
T ss_pred cCCCcEEEecCCc-----CccCcccHHHcC-CeEEEeCCCcccC
Confidence 4 78998888753 346777777673 4466666666653
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.47 E-value=0.04 Score=58.36 Aligned_cols=87 Identities=28% Similarity=0.287 Sum_probs=61.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 192 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 271 (374)
T 1cdo_A 192 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVG 271 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCC
Confidence 58899999999999999999999999 899998765 456677788642 12 333222 3688877775
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
..+ .-...+..++++ ..++.++
T Consensus 272 ~~~-----~~~~~~~~l~~~~G~iv~~G 294 (374)
T 1cdo_A 272 NVG-----VMRNALESCLKGWGVSVLVG 294 (374)
T ss_dssp CHH-----HHHHHHHTBCTTTCEEEECS
T ss_pred CHH-----HHHHHHHHhhcCCcEEEEEc
Confidence 211 123456667777 7777776
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.009 Score=59.34 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=41.2
Q ss_pred CEEEEEecChhHHHHHHH--HhcCCCEEEE-ECCCCChhHHHHcCCe---ecCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARR--AKGLGMNVIA-HDPYAPADKARAVGVE---LVSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~--lk~~G~~Vi~-~d~~~~~~~a~~~g~~---~~~l~ell~~aDvV~l~~Pl 293 (656)
++++|||.|.+|+.+|+. ....|+++.+ +|..+......-.|+. ..++++++++.|++++|+|.
T Consensus 86 ~rV~IIGAG~~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs 155 (215)
T 2vt3_A 86 TDVILIGVGNLGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPA 155 (215)
T ss_dssp -CEEEECCSHHHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCH
T ss_pred CEEEEEccCHHHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCc
Confidence 469999999999999994 3456888876 5655422111112332 23788998777999999993
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.46 E-value=0.024 Score=59.11 Aligned_cols=63 Identities=22% Similarity=0.351 Sum_probs=47.4
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEE-ECCCCChhHH-HHc-CCe-ecCHHHHh-----------ccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA-HDPYAPADKA-RAV-GVE-LVSFDQAL-----------ATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~-~d~~~~~~~a-~~~-g~~-~~~l~ell-----------~~aDvV~l~~P 292 (656)
.++||||+ |.||...++.++..+.++.+ +|++.....+ ... +.. +.++++++ .+.|+|++|+|
T Consensus 4 irvgiIG~gG~i~~~h~~~l~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP 82 (318)
T 3oa2_A 4 KNFALIGAAGYIAPRHMRAIKDTGNCLVSAYDINDSVGIIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSP 82 (318)
T ss_dssp CEEEEETTTSSSHHHHHHHHHHTTCEEEEEECSSCCCGGGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSC
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCC
Confidence 58999999 79999999999988888765 6877643222 222 333 34788887 57999999999
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.016 Score=60.31 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCC-hhHHHH---c---CCee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARA---V---GVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~-~~~a~~---~---g~~~-~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|..+|..+...|+ +|..+|.... ...+.+ . .+.. .++ +.+++||+|+++..
T Consensus 15 ~kV~ViGaG~vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag 86 (303)
T 2i6t_A 15 NKITVVGGGELGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVN 86 (303)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCC
Confidence 789999999999999999886677 9999998652 111111 1 1222 366 66899999999974
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.018 Score=61.17 Aligned_cols=88 Identities=24% Similarity=0.336 Sum_probs=63.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec----C---HHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----S---FDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.|.+|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|+..+ + ++++....|+|+-++....
T Consensus 194 ~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~g~Dvvid~~g~~~---- 269 (369)
T 1uuf_A 194 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH---- 269 (369)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC----
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcEEeccccHHHHHHhhcCCCEEEECCCCHH----
Confidence 48899999999999999999999999999998765 4566777786422 1 1223345788888776321
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006212 300 IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..++.++.
T Consensus 270 -~~~~~~~~l~~~G~iv~~G~ 289 (369)
T 1uuf_A 270 -NLDDFTTLLKRDGTMTLVGA 289 (369)
T ss_dssp -CHHHHHTTEEEEEEEEECCC
T ss_pred -HHHHHHHHhccCCEEEEecc
Confidence 12345666788888888763
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=95.41 E-value=0.013 Score=61.49 Aligned_cols=109 Identities=14% Similarity=0.074 Sum_probs=65.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChh--HHHHc--------CCee-cCHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPAD--KARAV--------GVEL-VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~--~a~~~--------g~~~-~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|+|||.|.+|.+++..+...++ ++..||...... .+.++ .+.. .+..+.+++||+|+++.+...
T Consensus 6 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~- 84 (318)
T 1ez4_A 6 QKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ- 84 (318)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC---
T ss_pred CEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC-
Confidence 689999999999999999886565 899999853211 11111 1111 145677999999999987432
Q ss_pred cccc-------ccH-------HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEE
Q 006212 297 TSKI-------FND-------ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQA 341 (656)
Q Consensus 297 T~~l-------i~~-------~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA 341 (656)
..++ .|. +.+....|+++++++ +..+| ...+.+. +...++.|.
T Consensus 85 ~~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~ 145 (318)
T 1ez4_A 85 KPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVA--ANPVDILTYATWKFSGFPKERVIGS 145 (318)
T ss_dssp --------CHHHHHHHHHHHHHHHHHTTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEec
Confidence 2221 111 122334789999998 44455 3333332 333466665
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.028 Score=55.09 Aligned_cols=71 Identities=23% Similarity=0.318 Sum_probs=49.4
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCC-eec--C----HHHHhccCCEEEEccCCC
Q 006212 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV-ELV--S----FDQALATADFISLHMPLN 294 (656)
Q Consensus 224 g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~-~~~--~----l~ell~~aDvV~l~~Plt 294 (656)
-..+.||+|.|.|. |.||+.+++.|...|++|++.++... .......++ ..+ | +.+.+..+|+|+.+....
T Consensus 16 ~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag~~ 95 (236)
T 3e8x_A 16 NLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAGSG 95 (236)
T ss_dssp -----CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCCCC
T ss_pred ccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCCCC
Confidence 35689999999997 99999999999999999999988753 233333455 432 2 456677888887776643
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=95.39 E-value=0.018 Score=61.03 Aligned_cols=63 Identities=13% Similarity=0.249 Sum_probs=47.3
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCChhHHHHc-CCee-cCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAPADKARAV-GVEL-VSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~-g~~~-~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+. .+..++.. +++|.+ +|+... ..+... ++.. .++++++. +.|+|++|+|.
T Consensus 6 ~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~-~~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~ 75 (358)
T 3gdo_A 6 IKVGILGYGLSGSVFHGPLLDVLDEYQISKIMTSRTE-EVKRDFPDAEVVHELEEITNDPAIELVIVTTPS 75 (358)
T ss_dssp EEEEEECCSHHHHHTTHHHHTTCTTEEEEEEECSCHH-HHHHHCTTSEEESSTHHHHTCTTCCEEEECSCT
T ss_pred ceEEEEccCHHHHHHHHHHHhhCCCeEEEEEEcCCHH-HHHhhCCCCceECCHHHHhcCCCCCEEEEcCCc
Confidence 47999999999997 67777766 788764 687642 233344 4443 48999998 78999999993
|
| >3k92_A NAD-GDH, NAD-specific glutamate dehydrogenase; ROCG, oxidoreductase; 2.30A {Bacillus subtilis} PDB: 3k8z_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.12 Score=56.21 Aligned_cols=107 Identities=21% Similarity=0.316 Sum_probs=70.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHHHHc----C------CeecCHHHHh-cc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKARAV----G------VELVSFDQAL-AT 283 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a~~~----g------~~~~~l~ell-~~ 283 (656)
|.++.|+||.|-|+|++|+..|+.|...|.+|++ |||.- +.+...+. | .+.++-++++ .+
T Consensus 216 g~~l~g~~vaVqG~GnVG~~aa~~l~e~GakVVavsD~~G~iyd~~GlD~~~l~~~~~~~g~i~~~~a~~~~~~~i~~~~ 295 (424)
T 3k92_A 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLDIPYLLDKRDSFGMVTNLFTDVITNEELLEKD 295 (424)
T ss_dssp TCCGGGCEEEEECCSHHHHHHHHHHHHHTCEEEEEECSSCEEECTTCCCHHHHHHHCCSSSCCGGGCSCCBCHHHHHHSC
T ss_pred CCCcccCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCcEECCCCCCHHHHHHHHHHhCCCCCCCcEEecCccceecc
Confidence 5679999999999999999999999999999874 33432 23222221 2 2345666655 47
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
||+++-|.. .+.|+.+....++ -.+|+-.+-+.+- .++ .+.|.+..|
T Consensus 296 ~DIliPcA~-----~n~I~~~~a~~l~-ak~V~EgAN~p~t-~eA-~~iL~~rGI 342 (424)
T 3k92_A 296 CDILVPAAI-----SNQITAKNAHNIQ-ASIVVERANGPTT-IDA-TKILNERGV 342 (424)
T ss_dssp CSEEEECSC-----SSCBCTTTGGGCC-CSEEECCSSSCBC-HHH-HHHHHHTTC
T ss_pred ccEEeecCc-----ccccChhhHhhcC-ceEEEcCCCCCCC-HHH-HHHHHHCCC
Confidence 999988875 3457777666673 4566677777753 333 234555444
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=95.36 E-value=0.022 Score=60.05 Aligned_cols=64 Identities=23% Similarity=0.397 Sum_probs=46.2
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCCe------------------e-cCHHHHhccCCEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAP--ADKARAVGVE------------------L-VSFDQALATADFI 287 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~~------------------~-~~l~ell~~aDvV 287 (656)
+|||+|+|.||+.+++.+... ++++.+ +|+... ...++..|+. . .++++++.++|+|
T Consensus 4 rVgIiG~G~iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV 83 (334)
T 2czc_A 4 KVGVNGYGTIGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDII 83 (334)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEE
T ss_pred EEEEEeEhHHHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEE
Confidence 799999999999999999865 578765 455432 1223334421 1 2688888899999
Q ss_pred EEccCCC
Q 006212 288 SLHMPLN 294 (656)
Q Consensus 288 ~l~~Plt 294 (656)
+.|+|..
T Consensus 84 ~~aTp~~ 90 (334)
T 2czc_A 84 VDATPGG 90 (334)
T ss_dssp EECCSTT
T ss_pred EECCCcc
Confidence 9999943
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=95.36 E-value=0.043 Score=58.12 Aligned_cols=87 Identities=28% Similarity=0.269 Sum_probs=60.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g 270 (374)
T 2jhf_A 191 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIG 270 (374)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCceEecccccchhHHHHHHHHhCCCCcEEEECCC
Confidence 58899999999999999999999999 899999765 456677777642 12 222222 3677777765
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
..+ + -...+..++++ ..++.++
T Consensus 271 ~~~-~----~~~~~~~l~~~~G~iv~~G 293 (374)
T 2jhf_A 271 RLD-T----MVTALSCCQEAYGVSVIVG 293 (374)
T ss_dssp CHH-H----HHHHHHHBCTTTCEEEECS
T ss_pred CHH-H----HHHHHHHhhcCCcEEEEec
Confidence 211 1 13445567777 6777665
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.056 Score=59.80 Aligned_cols=102 Identities=17% Similarity=0.180 Sum_probs=70.6
Q ss_pred ccccCCCEEEEEecC----------hhHHHHHHHHhcCCCEEEEECCCCChhHH----HH-c-------CCee-cCHHHH
Q 006212 224 GVSLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKA----RA-V-------GVEL-VSFDQA 280 (656)
Q Consensus 224 g~~l~gktvGIIGlG----------~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a----~~-~-------g~~~-~~l~el 280 (656)
+..+.|++|+|+|+- .-...+++.|...|.+|.+|||+.....+ .. . .+.+ .++.+.
T Consensus 330 ~~~~~~~~v~vlGlafK~~~dd~R~Spa~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (481)
T 2o3j_A 330 FNTVTDKKIAIFGFAFKKNTGDTRESSAIHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAA 409 (481)
T ss_dssp TTCCTTCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHH
T ss_pred ccccCCCeEEEEeeeeCCCCCccccChHHHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHH
Confidence 335899999999984 35678999999999999999999753321 11 1 1333 367889
Q ss_pred hccCCEEEEccCCCccccccccHHH-HhcCCCCcEEEEcCCCchhcHHHH
Q 006212 281 LATADFISLHMPLNPTTSKIFNDET-FAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 281 l~~aDvV~l~~Plt~~T~~li~~~~-l~~mK~gailINvaRg~ivde~aL 329 (656)
++.||.|++++.-. +-+. ++-+. ...|+...+|+|+ |+ ++|.+.+
T Consensus 410 ~~~ad~~vi~t~~~-~f~~-~~~~~~~~~~~~~~~i~D~-r~-~~~~~~~ 455 (481)
T 2o3j_A 410 ARGAHAIVVLTEWD-EFVE-LNYSQIHNDMQHPAAIFDG-RL-ILDQKAL 455 (481)
T ss_dssp HTTCSEEEECSCCG-GGTT-SCHHHHHHHSCSSCEEEES-SS-CSCHHHH
T ss_pred HcCCCEEEEcCCcH-Hhhc-cCHHHHHHhcCCCCEEEEC-CC-CCCHHHH
Confidence 99999999999843 3333 34443 3457776688987 44 4465544
|
| >3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.021 Score=59.30 Aligned_cols=54 Identities=11% Similarity=0.025 Sum_probs=45.3
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
...+.|.+..+|+||+|++|++.|+++|+||.+++-......+.-+|+++++-+
T Consensus 8 ~~~~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 61 (292)
T 3lou_A 8 PHQFVLTLSCPSAAGQVAAVVGLLDRHRCYVDELTVFDDDLSARFFVRCVFHAT 61 (292)
T ss_dssp CCEEEEEEEEESCSCHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEEC
T ss_pred CCcEEEEEEcCCCCCHHHHHHHHHHHCCCCEEeeEEEecCCCCceEEEEEEEcc
Confidence 334677788999999999999999999999999998765667777888887654
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.03 Score=58.66 Aligned_cols=62 Identities=23% Similarity=0.247 Sum_probs=48.6
Q ss_pred CCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCC---hhHHHHcCCeec---CHHHHh-ccCCEEEEc
Q 006212 229 GKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAP---ADKARAVGVELV---SFDQAL-ATADFISLH 290 (656)
Q Consensus 229 gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~---~~~a~~~g~~~~---~l~ell-~~aDvV~l~ 290 (656)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|.... .+...+.|+.+. +.+++. .++|+|+..
T Consensus 4 ~~~i~~iGiGg~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~S 73 (326)
T 3eag_A 4 MKHIHIIGIGGTFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIG 73 (326)
T ss_dssp CCEEEEESCCSHHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEEC
T ss_pred CcEEEEEEECHHHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEEC
Confidence 578999999999996 99999999999999997642 234556788653 445555 579999885
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.017 Score=60.76 Aligned_cols=110 Identities=14% Similarity=0.082 Sum_probs=65.5
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCCh--hHHHHc--C------Cee-cCHHHHhccCCEEEEccCCCc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA--DKARAV--G------VEL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~--~~a~~~--g------~~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
..+|+|||.|.+|.+++..+...++ ++..||..... ..+.++ . +.. .+..+.+++||+|+++.+..
T Consensus 9 ~~KI~IiGaG~vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~- 87 (326)
T 2zqz_A 9 HQKVILVGDGAVGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAP- 87 (326)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred CCEEEEECCCHHHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCC-
Confidence 3689999999999999999886555 89999986421 111111 1 111 24567799999999998743
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcCCCchhcH--HHHHHh--HhcCCeEEE
Q 006212 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVIDE--EALVRA--LDSGVVAQA 341 (656)
Q Consensus 296 ~T~~li-------~~-------~~l~~mK~gailINvaRg~ivde--~aL~~a--L~~g~i~gA 341 (656)
...++- |. +.+....|+++++++ +..+|. ..+.+. +...++.|.
T Consensus 88 ~k~g~~R~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~--tNPv~~~t~~~~k~s~~p~~rviG~ 149 (326)
T 2zqz_A 88 QKPGETRLDLVNKNLKILKSIVDPIVDSGFNGIFLVA--ANPVDILTYATWKLSGFPKNRVVGS 149 (326)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHHHHTCCSEEEEC--SSSHHHHHHHHHHHHCCCGGGEEEC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEe--CCcHHHHHHHHHHHcCCCHHHEEEc
Confidence 222221 11 122223688999998 445553 333332 333466565
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.042 Score=58.20 Aligned_cols=87 Identities=21% Similarity=0.190 Sum_probs=61.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 191 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~t~gg~Dvvid~~g 270 (373)
T 1p0f_A 191 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAG 270 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCcEEEecccccchHHHHHHHHhCCCCCEEEECCC
Confidence 48899999999999999999999999 899998765 456677888642 22 222222 4688877765
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
..+ + -...+..++++ ..++.++
T Consensus 271 ~~~-~----~~~~~~~l~~~~G~iv~~G 293 (373)
T 1p0f_A 271 RIE-T----MMNALQSTYCGSGVTVVLG 293 (373)
T ss_dssp CHH-H----HHHHHHTBCTTTCEEEECC
T ss_pred CHH-H----HHHHHHHHhcCCCEEEEEc
Confidence 211 1 13456667777 7777765
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.015 Score=62.46 Aligned_cols=63 Identities=17% Similarity=0.201 Sum_probs=49.3
Q ss_pred CEEEEEecCh---hHHHHHHHHhcCC-CEEEE--ECCCCC--hhHHHHcCCe----ecCHHHHhcc-------CCEEEEc
Q 006212 230 KTLAVMGFGK---VGSEVARRAKGLG-MNVIA--HDPYAP--ADKARAVGVE----LVSFDQALAT-------ADFISLH 290 (656)
Q Consensus 230 ktvGIIGlG~---IG~~vA~~lk~~G-~~Vi~--~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aDvV~l~ 290 (656)
.+|||||+|. ||+..+..++..+ +++.+ +|+... ...+.+.|+. +.++++++.+ .|+|++|
T Consensus 13 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~ 92 (398)
T 3dty_A 13 IRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIA 92 (398)
T ss_dssp EEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEE
T ss_pred ceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEEC
Confidence 5899999999 9999998887654 78774 688752 2345667873 3489999975 9999999
Q ss_pred cC
Q 006212 291 MP 292 (656)
Q Consensus 291 ~P 292 (656)
+|
T Consensus 93 tp 94 (398)
T 3dty_A 93 TP 94 (398)
T ss_dssp SC
T ss_pred CC
Confidence 99
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.051 Score=57.64 Aligned_cols=87 Identities=23% Similarity=0.192 Sum_probs=59.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~Dvvid~~G 274 (376)
T 1e3i_A 195 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAG 274 (376)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCcEEEccccccchHHHHHHHHhCCCccEEEECCC
Confidence 48899999999999999999999999 899998775 456677778642 12 222222 3677777665
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
..+ .-...+..++++ ..++.++
T Consensus 275 ~~~-----~~~~~~~~l~~~~G~iv~~G 297 (376)
T 1e3i_A 275 TAQ-----TLKAAVDCTVLGWGSCTVVG 297 (376)
T ss_dssp CHH-----HHHHHHHTBCTTTCEEEECC
T ss_pred CHH-----HHHHHHHHhhcCCCEEEEEC
Confidence 211 113455667776 6776665
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.052 Score=52.04 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=47.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--CHH----HHhccCCEEEEccCCCc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--SFD----QALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--~l~----ell~~aDvV~l~~Plt~ 295 (656)
++|.|.| .|.||+.+++.|...|++|++.++..........++..+ |+. +.+..+|+|+.+.....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~~~ 73 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGKITQTHKDINILQKDIFDLTLSDLSDQNVVVDAYGISP 73 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHHHHHHCSSSEEEECCGGGCCHHHHTTCSEEEECCCSST
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchhhhhccCCCeEEeccccChhhhhhcCCCEEEECCcCCc
Confidence 4689999 599999999999999999999998753221111344432 322 57789999998887543
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=95.19 E-value=0.021 Score=59.85 Aligned_cols=88 Identities=23% Similarity=0.350 Sum_probs=60.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------CHHHHh----ccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL----ATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell----~~aDvV~l~~Plt~~ 296 (656)
.|++|.|+|.|.||..+++.++.+|.+|++.+++. ..+.++++|+..+ ++.+.+ ...|+|+-++....
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~d~~~~~~~~~~~~~~~~~d~vid~~g~~~- 242 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAVSKP- 242 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCCEEecCCCccHHHHHHHHhCCCCEEEECCCCHH-
Confidence 47899999999999999999999999999999865 3455666776321 222222 35677777765211
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaR 320 (656)
.-...+..|+++..++.++.
T Consensus 243 ----~~~~~~~~l~~~G~~v~~g~ 262 (339)
T 1rjw_A 243 ----AFQSAYNSIRRGGACVLVGL 262 (339)
T ss_dssp ----HHHHHHHHEEEEEEEEECCC
T ss_pred ----HHHHHHHHhhcCCEEEEecc
Confidence 12345566777777777764
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.016 Score=60.97 Aligned_cols=63 Identities=16% Similarity=0.202 Sum_probs=44.8
Q ss_pred CEEEEEecChhHHH-HHH-HHhc-CCCEEE-EECCCCCh-hHHHH-cCCee-cCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSE-VAR-RAKG-LGMNVI-AHDPYAPA-DKARA-VGVEL-VSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~-~lk~-~G~~Vi-~~d~~~~~-~~a~~-~g~~~-~~l~ell~~--aDvV~l~~P 292 (656)
.+|||||+|.||+. .+. .++. -+++|. ++|+.... +.+.+ .++.. .++++++.+ .|+|++|+|
T Consensus 3 ~rvgiiG~G~~g~~~~~~~~~~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp 74 (345)
T 3f4l_A 3 INCAFIGFGKSTTRYHLPYVLNRKDSWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTH 74 (345)
T ss_dssp EEEEEECCSHHHHHHTHHHHTTCTTTEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSC
T ss_pred eEEEEEecCHHHHHHHHHHHHhcCCCeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCC
Confidence 37999999999997 444 3343 378887 57887532 22222 24543 489999986 899999999
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.044 Score=57.98 Aligned_cols=87 Identities=23% Similarity=0.254 Sum_probs=60.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 190 ~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g 269 (373)
T 2fzw_A 190 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIG 269 (373)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCC
Confidence 48899999999999999999999999 899998765 456677777642 12 222222 3688777765
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
..+ .-...+..++++ ..++.++
T Consensus 270 ~~~-----~~~~~~~~l~~~~G~iv~~G 292 (373)
T 2fzw_A 270 NVK-----VMRAALEACHKGWGVSVVVG 292 (373)
T ss_dssp CHH-----HHHHHHHTBCTTTCEEEECS
T ss_pred cHH-----HHHHHHHhhccCCcEEEEEe
Confidence 211 113456667777 7777765
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=95.13 E-value=0.023 Score=59.62 Aligned_cols=63 Identities=21% Similarity=0.314 Sum_probs=48.6
Q ss_pred CEEEEEecC-hhHHHHHHHHhcC--CCEEE-EECCCCC--hhHHHHcCC-e-ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFG-KVGSEVARRAKGL--GMNVI-AHDPYAP--ADKARAVGV-E-LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG-~IG~~vA~~lk~~--G~~Vi-~~d~~~~--~~~a~~~g~-~-~~~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+| .+|+..+..++.. ++++. ++|++.. ...+.+.|+ . +.++++++. +.|+|++|+|
T Consensus 19 irvgiIG~G~~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 91 (340)
T 1zh8_A 19 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLP 91 (340)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCC
T ss_pred eeEEEEecCHHHHHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 479999999 8999999999876 57775 5788752 233455676 3 458999986 5899999999
|
| >3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=95.13 E-value=0.014 Score=60.45 Aligned_cols=53 Identities=15% Similarity=0.126 Sum_probs=43.8
Q ss_pred cCccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 556 LEGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 556 g~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
...+.|.+..+|+||++++|++.|+++|+||.+++-......+.-.|++.++-
T Consensus 4 ~~~~iLtv~g~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~ 56 (288)
T 3obi_A 4 HHQYVLTLSCPDRAGIVSAVSTFLFENGQNILDAQQYNDTESGHFFMRVVFNA 56 (288)
T ss_dssp CCEEEEEEEEECCTTHHHHHHHHHHHTTEEEEEEEEEEETTTTEEEEEEEEEE
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHCCCcEEeeeeeecCCCCceEEEEEEEc
Confidence 34467778899999999999999999999999999875556677778777653
|
| >4ekn_B Aspartate carbamoyltransferase; atcase, aspartate transcarbamoylase, pyrimidine biosynthesis thermostability, substrate channeling; 2.50A {Methanocaldococcus jannaschii} PDB: 3e2p_A 2rgw_A | Back alignment and structure |
|---|
Probab=95.12 E-value=0.16 Score=52.89 Aligned_cols=65 Identities=15% Similarity=0.252 Sum_probs=52.1
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcC-CCEEEEECCCC---Ch---hHHHHcCCee---cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA---PA---DKARAVGVEL---VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~-G~~Vi~~d~~~---~~---~~a~~~g~~~---~~l~ell~~aDvV~l~ 290 (656)
.+.|++|++||= |++..+++..+..+ |++|....|.. +. +.+.+.|..+ .++++.+++||+|..-
T Consensus 148 ~l~glkva~vGD~~~~rva~Sl~~~~~~~~G~~v~~~~P~~~~~~~~~~~~~~~~g~~~~~~~d~~eav~~aDvvy~~ 225 (306)
T 4ekn_B 148 RIDGIKIAFVGDLKYGRTVHSLVYALSLFENVEMYFVSPKELRLPKDIIEDLKAKNIKFYEKESLDDLDDDIDVLYVT 225 (306)
T ss_dssp CSTTCEEEEESCTTTCHHHHHHHHHHHTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCGGGCCTTCSEEEEC
T ss_pred CcCCCEEEEEcCCCCCcHHHHHHHHHHhcCCCEEEEECCcccccCHHHHHHHHHcCCEEEEEcCHHHHhcCCCEEEeC
Confidence 478999999998 58999999999999 99999988742 22 2345566643 4899999999999874
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.014 Score=61.60 Aligned_cols=63 Identities=11% Similarity=0.201 Sum_probs=46.4
Q ss_pred CEEEEEecChhHHHHHHHHhcC--------CCEEE-EECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--------GMNVI-AHDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--------G~~Vi-~~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~P 292 (656)
-+|||||+|.||+.-++.++.. +.+|. ++|++.. ...+.+.|+. +.+++++++ +.|+|++|+|
T Consensus 7 lrvgiIG~G~ig~~h~~~~~~~~~~~~~~~~~~l~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP 84 (390)
T 4h3v_A 7 LGIGLIGYAFMGAAHSQAWRSAPRFFDLPLHPDLNVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTP 84 (390)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHHHHSCCSSEEEEEEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSC
T ss_pred CcEEEEcCCHHHHHHHHHHHhCccccccccCceEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 3799999999999888776643 23655 4688752 2345666764 458999996 5899999999
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=95.09 E-value=0.016 Score=60.89 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=38.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.||...++.++.+|. +|++.++.. ..+.++++|+
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga 213 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGA 213 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCC
Confidence 68999999999999999999999999 999999874 3455666665
|
| >2ozp_A N-acetyl-gamma-glutamyl-phosphate reductase; amino acid biosynthesis, structural genomics, riken structur genomics/proteomics initiative; 2.01A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.028 Score=59.66 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=53.3
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCC-CEEEEE-CCCCC-hhHHH------H-cCCeecCHHHHhccCCEEEEccCCCcccc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLG-MNVIAH-DPYAP-ADKAR------A-VGVELVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~-d~~~~-~~~a~------~-~g~~~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.+|||+| .|.||+.+.+.|.... +++.+. ++... ..... . ......++++ +..+|+|++|+|... +.
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elv~v~s~~~~g~~~~~~~~~~~g~~~~~~~~~~~-~~~vDvV~~a~g~~~-s~ 82 (345)
T 2ozp_A 5 KTLSIVGASGYAGGEFLRLALSHPYLEVKQVTSRRFAGEPVHFVHPNLRGRTNLKFVPPEK-LEPADILVLALPHGV-FA 82 (345)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCTTEEEEEEBCSTTTTSBGGGTCGGGTTTCCCBCBCGGG-CCCCSEEEECCCTTH-HH
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCcEEEEEECchhhCchhHHhCchhcCcccccccchhH-hcCCCEEEEcCCcHH-HH
Confidence 4799999 8999999999998664 587665 43221 11110 0 1122334444 578999999999542 12
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
... -..++.|+.+|+.+.
T Consensus 83 ~~a----~~~~~aG~~VId~Sa 100 (345)
T 2ozp_A 83 REF----DRYSALAPVLVDLSA 100 (345)
T ss_dssp HTH----HHHHTTCSEEEECSS
T ss_pred HHH----HHHHHCCCEEEEcCc
Confidence 111 122477899999874
|
| >1ys4_A Aspartate-semialdehyde dehydrogenase; oxidoreductase, asadh; HET: NAP; 2.29A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.021 Score=60.63 Aligned_cols=85 Identities=18% Similarity=0.115 Sum_probs=52.3
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE--CCCCC-hhHHHHcC---------------CeecCHHHHhc-cCCEEE
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH--DPYAP-ADKARAVG---------------VELVSFDQALA-TADFIS 288 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~--d~~~~-~~~a~~~g---------------~~~~~l~ell~-~aDvV~ 288 (656)
.+|||+| .|.||+.+++.|... +++|.+. ++... .......+ +...+++++++ .+|+|+
T Consensus 9 ~kV~IiGAtG~iG~~llr~L~~~p~~ev~~i~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~ 88 (354)
T 1ys4_A 9 IKVGVLGATGSVGQRFVQLLADHPMFELTALAASERSAGKKYKDACYWFQDRDIPENIKDMVVIPTDPKHEEFEDVDIVF 88 (354)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTCSSEEEEEEEECTTTTTSBHHHHSCCCCSSCCCHHHHTCBCEESCTTSGGGTTCCEEE
T ss_pred ceEEEECcCCHHHHHHHHHHhcCCCCEEEEEEcccccccccHHHhcccccccccccCceeeEEEeCCHHHHhcCCCCEEE
Confidence 4899999 999999999999866 4787665 33221 11111111 11125566656 899999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
+|+|... +.... -..++.|+.+||.+
T Consensus 89 ~atp~~~-~~~~a----~~~~~aG~~VId~s 114 (354)
T 1ys4_A 89 SALPSDL-AKKFE----PEFAKEGKLIFSNA 114 (354)
T ss_dssp ECCCHHH-HHHHH----HHHHHTTCEEEECC
T ss_pred ECCCchH-HHHHH----HHHHHCCCEEEECC
Confidence 9999432 11111 11235688888876
|
| >4h31_A Otcase, ornithine carbamoyltransferase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PE5; 1.70A {Vibrio vulnificus} PDB: 3upd_A* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.27 Score=52.31 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=83.0
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecC--hhHHHHHHHH
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFG--KVGSEVARRA 248 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG--~IG~~vA~~l 248 (656)
.+...+|+|.|.-|....++ .+++=++.+.++ +.+..+.|++|++||=| ++..+.+..+
T Consensus 142 la~~s~vPVING~g~~~HPt--QaL~Dl~Ti~e~-----------------~~~~~l~gl~ia~vGD~~~~va~S~~~~~ 202 (358)
T 4h31_A 142 LGAFAGVPVWNGLTDEFHPT--QILADFLTMLEH-----------------SQGKALADIQFAYLGDARNNVGNSLMVGA 202 (358)
T ss_dssp HHHHSSSCEEESCCSSCCHH--HHHHHHHHHHHT-----------------TTTCCGGGCEEEEESCTTSHHHHHHHHHH
T ss_pred hhhhccCceECCCCcCCCch--HHHHHHHHHHHH-----------------hcCCCcCceEEEecCCCCcccchHHHHHH
Confidence 34556788999655544333 123223332221 12356889999999954 7999999999
Q ss_pred hcCCCEEEEECCCC---Chh-------HHHHcCCee---cCHHHHhccCCEEEEccCCC----ccc---------ccccc
Q 006212 249 KGLGMNVIAHDPYA---PAD-------KARAVGVEL---VSFDQALATADFISLHMPLN----PTT---------SKIFN 302 (656)
Q Consensus 249 k~~G~~Vi~~d~~~---~~~-------~a~~~g~~~---~~l~ell~~aDvV~l~~Plt----~~T---------~~li~ 302 (656)
..+|++|....|.. +.+ .+.+.|..+ .++++.+++||+|..-.=.. ++. ..-++
T Consensus 203 ~~~g~~v~~~~P~~~~p~~~~~~~~~~~~~~~g~~v~~~~d~~eav~~aDvvyt~~w~s~~~~~~~~~~~~~~~~~y~v~ 282 (358)
T 4h31_A 203 AKMGMDIRLVGPQAYWPDEELVAACQAIAKQTGGKITLTENVAEGVQGCDFLYTDVWVSMGESPEAWDERVALMKPYQVN 282 (358)
T ss_dssp HHHTCEEEEESCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTCSEEEECCSSCTTSCTTHHHHHHHHHGGGCBC
T ss_pred HhcCceEEEeCCcccCCCHHHHHHHHHHHHHcCCcceeccCHHHHhccCcEEEEEEEEEcccCchhHHHHHHHHhCcccC
Confidence 99999999988742 221 133445432 38999999999998532211 110 12356
Q ss_pred HHHHhc-CCCCcEEEEcC
Q 006212 303 DETFAK-MKKGVRIVNVA 319 (656)
Q Consensus 303 ~~~l~~-mK~gailINva 319 (656)
.+.+++ .||+++|.-|.
T Consensus 283 ~~~l~~~ak~~~i~mH~L 300 (358)
T 4h31_A 283 MNVLKQTGNPNVKFMHCL 300 (358)
T ss_dssp HHHHHHTTCTTCEEEECS
T ss_pred HHHHHhcCCCCcEEECCC
Confidence 777765 47788888886
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.99 E-value=0.02 Score=60.62 Aligned_cols=64 Identities=28% Similarity=0.353 Sum_probs=43.9
Q ss_pred EEEEEecChhHHHHHHHHhc-CCCEEEEE-CCCCCh--hHHHHc------------------CCee-cCHHHHhccCCEE
Q 006212 231 TLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPA--DKARAV------------------GVEL-VSFDQALATADFI 287 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~-~G~~Vi~~-d~~~~~--~~a~~~------------------g~~~-~~l~ell~~aDvV 287 (656)
+|||+|+|.||+.+++.+.. -++++.+. |+.... ..+... ++.. .+.++++.++|+|
T Consensus 3 kVgIiGaG~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV 82 (337)
T 1cf2_P 3 AVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIV 82 (337)
T ss_dssp EEEEECCSTTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEE
T ss_pred EEEEEeECHHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEE
Confidence 79999999999999999986 47888664 443211 112221 1111 1567778899999
Q ss_pred EEccCCC
Q 006212 288 SLHMPLN 294 (656)
Q Consensus 288 ~l~~Plt 294 (656)
+.|+|..
T Consensus 83 ~~atp~~ 89 (337)
T 1cf2_P 83 IDCTPEG 89 (337)
T ss_dssp EECCSTT
T ss_pred EECCCch
Confidence 9999943
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.97 E-value=0.045 Score=57.61 Aligned_cols=88 Identities=22% Similarity=0.264 Sum_probs=62.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-c--C---HHH----Hh----ccCCEEEEcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-V--S---FDQ----AL----ATADFISLHM 291 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~--~---l~e----ll----~~aDvV~l~~ 291 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+.. + + -++ +. ...|+|+-++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~~i~~~~~~g~D~vid~~ 250 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 250 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEEcCcccccchHHHHHHHHhCCCCCEEEECC
Confidence 48899999999999999999999999 999998765 346677788642 1 1 111 11 2478888877
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
.... .-...+..++++..++.++-
T Consensus 251 g~~~-----~~~~~~~~l~~~G~iv~~G~ 274 (356)
T 1pl8_A 251 GAEA-----SIQAGIYATRSGGTLVLVGL 274 (356)
T ss_dssp CCHH-----HHHHHHHHSCTTCEEEECSC
T ss_pred CChH-----HHHHHHHHhcCCCEEEEEec
Confidence 6221 11345666888888888763
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=94.93 E-value=0.027 Score=58.26 Aligned_cols=101 Identities=20% Similarity=0.309 Sum_probs=65.0
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEE-EECCCCChhHHHHcCCeec-CHHHHhc--cCCEEEEccCCCccccccccH
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Plt~~T~~li~~ 303 (656)
.++|+|+|. |++|+.+++.++..|++++ ..+|..... ...|+... +++++.. .+|++++++|. +.+...+.
T Consensus 7 ~~~VaVvGasG~~G~~~~~~l~~~g~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~- 82 (288)
T 1oi7_A 7 ETRVLVQGITGREGQFHTKQMLTYGTKIVAGVTPGKGGM--EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAAL- 82 (288)
T ss_dssp TCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHH-
T ss_pred CCEEEEECCCCCHHHHHHHHHHHcCCeEEEEECCCCCCc--eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHH-
Confidence 468999999 9999999999998899854 577764211 12466554 7999988 89999999992 22333332
Q ss_pred HHHhcCCCCcE-EEEcCCCc-hhcHHHHHHhHhcC
Q 006212 304 ETFAKMKKGVR-IVNVARGG-VIDEEALVRALDSG 336 (656)
Q Consensus 304 ~~l~~mK~gai-lINvaRg~-ivde~aL~~aL~~g 336 (656)
+.. +.|.- +|..+.|= ..+++.+.+..++.
T Consensus 83 ea~---~~Gi~~vVi~t~G~~~~~~~~l~~~a~~~ 114 (288)
T 1oi7_A 83 EAA---HAGIPLIVLITEGIPTLDMVRAVEEIKAL 114 (288)
T ss_dssp HHH---HTTCSEEEECCSCCCHHHHHHHHHHHHHH
T ss_pred HHH---HCCCCEEEEECCCCCHHHHHHHHHHHHHc
Confidence 222 22322 44454442 22345666666553
|
| >2nqt_A N-acetyl-gamma-glutamyl-phosphate reductase; apoprotein, dimer, rossmann fold, structural genomics, PSI, protein structure initiative; 1.58A {Mycobacterium tuberculosis} PDB: 2i3a_A* 2i3g_A | Back alignment and structure |
|---|
Probab=94.92 E-value=0.028 Score=59.90 Aligned_cols=86 Identities=20% Similarity=0.160 Sum_probs=55.6
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCC------CEEEEEC-CC-CC--hhH----H---HHcCCeecCHHHHhccCCEEEEcc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLG------MNVIAHD-PY-AP--ADK----A---RAVGVELVSFDQALATADFISLHM 291 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G------~~Vi~~d-~~-~~--~~~----a---~~~g~~~~~l~ell~~aDvV~l~~ 291 (656)
.+|+|+| .|.+|+.+.+.|...+ .++..+. +. .. ... . ....+.-.+.++ +..+|+|++|+
T Consensus 10 ~kVaIvGATG~vG~~llr~L~~~~~~~~~~~ei~~l~s~~~agk~~~~~~~~l~~~~~~~~~~~~~~~-~~~~DvVf~al 88 (352)
T 2nqt_A 10 TKVAVAGASGYAGGEILRLLLGHPAYADGRLRIGALTAATSAGSTLGEHHPHLTPLAHRVVEPTEAAV-LGGHDAVFLAL 88 (352)
T ss_dssp EEEEEETTTSHHHHHHHHHHHTCHHHHTTSEEEEEEEESSCTTSBGGGTCTTCGGGTTCBCEECCHHH-HTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCCCccEEEEEEECCCcCCCchhhhcccccccceeeeccCCHHH-hcCCCEEEECC
Confidence 5899999 9999999999998766 4666653 22 11 110 0 011111224333 56899999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
|... ..+....++.|+.+||.+.--
T Consensus 89 g~~~------s~~~~~~~~~G~~vIDlSa~~ 113 (352)
T 2nqt_A 89 PHGH------SAVLAQQLSPETLIIDCGADF 113 (352)
T ss_dssp TTSC------CHHHHHHSCTTSEEEECSSTT
T ss_pred CCcc------hHHHHHHHhCCCEEEEECCCc
Confidence 9552 344444456789999998543
|
| >2yfk_A Aspartate/ornithine carbamoyltransferase; transcarbamylase; 2.55A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.12 Score=56.16 Aligned_cols=64 Identities=28% Similarity=0.375 Sum_probs=50.1
Q ss_pred cCCCEEEEEe-----cCh---hHHHHHHHHhcCCCEEEEECCCC---ChhH-------HHHcCC--e-ecCHHHHhccCC
Q 006212 227 LVGKTLAVMG-----FGK---VGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGV--E-LVSFDQALATAD 285 (656)
Q Consensus 227 l~gktvGIIG-----lG~---IG~~vA~~lk~~G~~Vi~~d~~~---~~~~-------a~~~g~--~-~~~l~ell~~aD 285 (656)
|.|++|+||| +|. +..+++..+..+|++|....|.. ..+. +.+.|. . ..++++.+++||
T Consensus 186 l~Glkva~vgd~~~s~Gd~nnVa~Sli~~l~~lG~~v~l~~P~~~~~~p~~~~~a~~~a~~~G~~v~~~~d~~eav~~AD 265 (418)
T 2yfk_A 186 LKGKKVAMTWAYSPSYGKPLSVPQGIVGLMTRLGMDVVLAHPEGYEIMPEVEEVAKKNAAEFGGNFTKTNSMAEAFKDAD 265 (418)
T ss_dssp GTTCEEEEECCCCSSSCCCSHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHSSEEEEESCHHHHHTTCS
T ss_pred cCCCEEEEEeccccccCccchHHHHHHHHHHHcCCEEEEECCccccCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhcCCC
Confidence 8899999997 454 99999999999999999988853 2221 234564 3 248999999999
Q ss_pred EEEEc
Q 006212 286 FISLH 290 (656)
Q Consensus 286 vV~l~ 290 (656)
+|..-
T Consensus 266 VVytd 270 (418)
T 2yfk_A 266 VVYPK 270 (418)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 99984
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.024 Score=61.36 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=48.5
Q ss_pred CEEEEEecCh---hHHHHHHHHhcCC-CEEE--EECCCCC--hhHHHHcCCe----ecCHHHHhcc-------CCEEEEc
Q 006212 230 KTLAVMGFGK---VGSEVARRAKGLG-MNVI--AHDPYAP--ADKARAVGVE----LVSFDQALAT-------ADFISLH 290 (656)
Q Consensus 230 ktvGIIGlG~---IG~~vA~~lk~~G-~~Vi--~~d~~~~--~~~a~~~g~~----~~~l~ell~~-------aDvV~l~ 290 (656)
.+|||||+|. ||+..+..++..+ +++. ++|+... ...+++.|+. +.++++++.+ .|+|++|
T Consensus 38 ~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~ 117 (417)
T 3v5n_A 38 IRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIV 117 (417)
T ss_dssp EEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEEC
T ss_pred ceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEEC
Confidence 4899999999 9999888887654 7876 4688752 2345567773 3489999976 9999999
Q ss_pred cCC
Q 006212 291 MPL 293 (656)
Q Consensus 291 ~Pl 293 (656)
+|.
T Consensus 118 tp~ 120 (417)
T 3v5n_A 118 TPN 120 (417)
T ss_dssp SCT
T ss_pred CCc
Confidence 993
|
| >1zud_1 Adenylyltransferase THIF; thiamin, thiazole, protein-protein complex, THIF, TRAN biosynthetic protein complex; 1.98A {Escherichia coli} PDB: 1zfn_A* 1zkm_A | Back alignment and structure |
|---|
Probab=94.89 E-value=0.017 Score=58.52 Aligned_cols=97 Identities=19% Similarity=0.241 Sum_probs=60.8
Q ss_pred HHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-Ch----------------hHH--
Q 006212 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PA----------------DKA-- 267 (656)
Q Consensus 208 ~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~----------------~~a-- 267 (656)
+.++++-..|... .-..|.+++|.|||+|.+|..+|+.|...|. ++..+|+.. .. .++
T Consensus 9 y~Rq~~l~~~g~~--~q~~l~~~~VlvvG~GglG~~va~~La~~Gvg~i~lvD~d~v~~sNL~Rq~l~~~~diG~~Ka~~ 86 (251)
T 1zud_1 9 YSRQILLDDIALD--GQQKLLDSQVLIIGLGGLGTPAALYLAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQV 86 (251)
T ss_dssp THHHHTSTTTHHH--HHHHHHTCEEEEECCSTTHHHHHHHHHHTTCSEEEEECCCBCCGGGTTTCTTCCGGGTTSBHHHH
T ss_pred hhhhcchhhcCHH--HHHHHhcCcEEEEccCHHHHHHHHHHHHcCCCeEEEEeCCCcccccCCCCccCChhhCCCHHHHH
Confidence 3444444445431 1236889999999999999999999999887 777887542 00 011
Q ss_pred -----HHc--CCe--e----c---CHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 268 -----RAV--GVE--L----V---SFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 268 -----~~~--g~~--~----~---~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+. +++ . . +++++++++|+|+.|+. +.+++.++++....
T Consensus 87 ~~~~l~~~np~~~v~~~~~~~~~~~~~~~~~~~DvVi~~~d-~~~~r~~l~~~~~~ 141 (251)
T 1zud_1 87 SQQRLTQLNPDIQLTALQQRLTGEALKDAVARADVVLDCTD-NMATRQEINAACVA 141 (251)
T ss_dssp HHHHHHHHCTTSEEEEECSCCCHHHHHHHHHHCSEEEECCS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCEEEEEeccCCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHH
Confidence 111 121 1 1 24567778888888876 55566666665544
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.88 E-value=0.033 Score=58.37 Aligned_cols=59 Identities=24% Similarity=0.355 Sum_probs=46.5
Q ss_pred CCEEEEEecChhHH-HHHHHHhcC-CCEEEE-ECCCCChhHHHHcCCe-ecCHHHHhcc---CCEEEEccC
Q 006212 229 GKTLAVMGFGKVGS-EVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALAT---ADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~-~vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~g~~-~~~l~ell~~---aDvV~l~~P 292 (656)
-.+|||||+|.||+ ..++.++.. +++|.+ +|+... ..|+. +.++++++.+ .|+|++|+|
T Consensus 25 ~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~~~-----~~g~~~~~~~~~ll~~~~~vD~V~i~tp 90 (330)
T 4ew6_A 25 PINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRHGT-----VEGVNSYTTIEAMLDAEPSIDAVSLCMP 90 (330)
T ss_dssp CEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSSCC-----CTTSEEESSHHHHHHHCTTCCEEEECSC
T ss_pred CceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCChh-----hcCCCccCCHHHHHhCCCCCCEEEEeCC
Confidence 35899999999998 788888865 788765 687642 24665 3489999875 999999999
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.86 E-value=0.03 Score=59.47 Aligned_cols=68 Identities=15% Similarity=0.224 Sum_probs=46.4
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcC----Ceec---CHHHHhccCCEEEEccCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG----VELV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g----~~~~---~l~ell~~aDvV~l~~Plt 294 (656)
+-+.++|+|+|.|.+|+.+|+.|.. ..+|.+.|.... .+.+.+.. +... ++.++++++|+|+.|+|..
T Consensus 13 ~g~~mkilvlGaG~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~ 88 (365)
T 3abi_A 13 EGRHMKVLILGAGNIGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGF 88 (365)
T ss_dssp ---CCEEEEECCSHHHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGG
T ss_pred cCCccEEEEECCCHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCc
Confidence 3344579999999999999999975 478888887642 22222111 1111 3677899999999999943
|
| >3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.044 Score=56.69 Aligned_cols=53 Identities=9% Similarity=-0.001 Sum_probs=44.8
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
..+.|.+..+|+||++++|++.|+++|+||.+++-......+.-.|+++++-+
T Consensus 7 ~~~vLtv~c~DrpGIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 59 (286)
T 3n0v_A 7 DTWILTADCPSMLGTVDVVTRYLFEQRCYVTEHHSFDDRQSGRFFIRVEFRQP 59 (286)
T ss_dssp CCEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred CcEEEEEEeCCCCCHHHHHHHHHHHCCCCeeeeeeeccCCCCeeEEEEEEecC
Confidence 34677888999999999999999999999999998755566777888887653
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.84 E-value=0.025 Score=59.16 Aligned_cols=87 Identities=20% Similarity=0.238 Sum_probs=59.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------CHHHHh----ccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL----ATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell----~~aDvV~l~~Plt~~ 296 (656)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|...+ ++.+.+ ...|+|+.++...+
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~- 244 (340)
T 3s2e_A 166 PGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPK- 244 (340)
T ss_dssp TTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHH-
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHH-
Confidence 48899999999999999999999999999998765 4556777776321 222222 24677766654211
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
.-...+..++++..++.++
T Consensus 245 ----~~~~~~~~l~~~G~iv~~G 263 (340)
T 3s2e_A 245 ----AFSQAIGMVRRGGTIALNG 263 (340)
T ss_dssp ----HHHHHHHHEEEEEEEEECS
T ss_pred ----HHHHHHHHhccCCEEEEeC
Confidence 1133455567777777665
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=94.84 E-value=0.034 Score=58.98 Aligned_cols=64 Identities=11% Similarity=0.099 Sum_probs=48.0
Q ss_pred CCEEEEEecChhHH-HHHHHHhcCCCEEEE-ECCCCC--hhHHHHcCC-e-ecCHHHHhcc--CCEEEEccC
Q 006212 229 GKTLAVMGFGKVGS-EVARRAKGLGMNVIA-HDPYAP--ADKARAVGV-E-LVSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~-~vA~~lk~~G~~Vi~-~d~~~~--~~~a~~~g~-~-~~~l~ell~~--aDvV~l~~P 292 (656)
-.+|||||+|.+|. .++..++.-++++.+ +|+... ...+.+.|. . +.++++++.+ .|+|++|+|
T Consensus 26 ~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 97 (361)
T 3u3x_A 26 ELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAV 97 (361)
T ss_dssp CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCC
T ss_pred CcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 35899999999995 567777767899765 787752 233455663 3 4589999975 899999999
|
| >2dt5_A AT-rich DNA-binding protein; REX, NADH, NAD, rossmann fold, redox sensing, winged helix, themophilus; HET: NAD; 2.16A {Thermus thermophilus} SCOP: a.4.5.38 c.2.1.12 PDB: 1xcb_A* 3ikt_A* 3ikv_A 3il2_A* | Back alignment and structure |
|---|
Probab=94.82 E-value=0.014 Score=57.74 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=43.5
Q ss_pred CEEEEEecChhHHHHHHH--HhcCCCEEEE-ECCCCChhHHHHcCCe---ecCHHHHhc-cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARR--AKGLGMNVIA-HDPYAPADKARAVGVE---LVSFDQALA-TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~--lk~~G~~Vi~-~d~~~~~~~a~~~g~~---~~~l~ell~-~aDvV~l~~Pl 293 (656)
++++|||.|.+|+.+++. ... |+++.+ +|...........|+. ..+++++++ +.|.|++|+|.
T Consensus 81 ~rV~IIGaG~~G~~la~~~~~~~-g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~ell~~~ID~ViIA~Ps 150 (211)
T 2dt5_A 81 WGLCIVGMGRLGSALADYPGFGE-SFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVPR 150 (211)
T ss_dssp EEEEEECCSHHHHHHHHCSCCCS-SEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSCH
T ss_pred CEEEEECccHHHHHHHHhHhhcC-CcEEEEEEeCCHHHHhhhhcCCeeecHHhHHHHHHcCCCEEEEeCCc
Confidence 579999999999999995 234 888877 4654322111112332 237888886 59999999993
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.02 Score=61.45 Aligned_cols=64 Identities=16% Similarity=0.209 Sum_probs=50.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcC--CCEEEE-ECCCC--ChhHHHHcCCee-cCHHHHhccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGL--GMNVIA-HDPYA--PADKARAVGVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~--G~~Vi~-~d~~~--~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
-.+|||||.| +|+.-++.++.. ++++.+ +|+.. ....+++.|+.. .++++++.+.|++++++|.
T Consensus 7 ~~rv~VvG~G-~g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~ 76 (372)
T 4gmf_A 7 KQRVLIVGAK-FGEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRS 76 (372)
T ss_dssp CEEEEEECST-TTHHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC-
T ss_pred CCEEEEEehH-HHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCC
Confidence 3579999999 799878877765 688775 68875 334567788864 4899999999999999993
|
| >1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.028 Score=61.88 Aligned_cols=91 Identities=16% Similarity=0.084 Sum_probs=59.6
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHH---HcCCeec--CH-HHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKAR---AVGVELV--SF-DQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~---~~g~~~~--~l-~ell~~aDvV~l~~Plt~~T 297 (656)
..++.||++.|||.|.+|.+.++.|...|.+|.++|+....+... +.++.+. .+ ++.+..+|+|+.+. ..++
T Consensus 7 ~~~l~~~~vlVvGgG~va~~k~~~L~~~ga~V~vi~~~~~~~~~~l~~~~~i~~~~~~~~~~~l~~~~lVi~at-~~~~- 84 (457)
T 1pjq_A 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAAT-DDDT- 84 (457)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECC-SCHH-
T ss_pred EEECCCCEEEEECCCHHHHHHHHHHHhCcCEEEEEcCCCCHHHHHHHhcCCEEEEECCCCccccCCccEEEEcC-CCHH-
Confidence 457899999999999999999999999999999999876443221 1234332 11 23456788877643 3332
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
+|.......+.-.+.||+.
T Consensus 85 ---~n~~i~~~a~~~~i~vn~~ 103 (457)
T 1pjq_A 85 ---VNQRVSDAAESRRIFCNVV 103 (457)
T ss_dssp ---HHHHHHHHHHHTTCEEEET
T ss_pred ---HHHHHHHHHHHcCCEEEEC
Confidence 2334444444444556653
|
| >2yfq_A Padgh, NAD-GDH, NAD-specific glutamate dehydrogenase; oxidoreductase; 2.94A {Peptoniphilus asaccharolyticus} | Back alignment and structure |
|---|
Probab=94.79 E-value=0.064 Score=58.41 Aligned_cols=95 Identities=19% Similarity=0.245 Sum_probs=57.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE-ECCC------------C-ChhHH----HHcC-------CeecCHH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPY------------A-PADKA----RAVG-------VELVSFD 278 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~------------~-~~~~a----~~~g-------~~~~~l~ 278 (656)
|.++.|++|.|.|+|++|+.+|+.|...|.+|++ .|.+ - +.+.. .+.| .+.++.+
T Consensus 207 g~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVavsD~~~~~~~G~i~d~~Gld~~~l~~~~~~~g~i~~~~~a~~i~~~ 286 (421)
T 2yfq_A 207 GIKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKELLAYKEANKTLIGFPGAERITDE 286 (421)
T ss_dssp TCCGGGSCEEEECCSHHHHHHHHHHHHTTCCEEECCBCCSSSCSBCCBCSSCCCHHHHHHHHHHHCC-------------
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEecCCCccceEEECCCCCCHHHHHHHHHhcCCcccCCCceEeCcc
Confidence 5678999999999999999999999999999995 3444 1 11111 1112 1233334
Q ss_pred HHhc-cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 279 QALA-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 279 ell~-~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
+++. +||+++-|.+ .+.++.+....+ +..+|+-.+-+.+-
T Consensus 287 ~~~~~~~DIliP~A~-----~n~i~~~~A~~l-~ak~VvEgAN~P~t 327 (421)
T 2yfq_A 287 EFWTKEYDIIVPAAL-----ENVITGERAKTI-NAKLVCEAANGPTT 327 (421)
T ss_dssp --------CEEECSC-----SSCSCHHHHTTC-CCSEEECCSSSCSC
T ss_pred chhcCCccEEEEcCC-----cCcCCcccHHHc-CCeEEEeCCccccC
Confidence 4443 6888888765 344777777777 35566777777764
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.03 Score=61.97 Aligned_cols=63 Identities=11% Similarity=0.184 Sum_probs=49.6
Q ss_pred CEEEEEec----ChhHHHHHHHHhcC--CCEEE-EECCCCC--hhHHHHcCCe----ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGF----GKVGSEVARRAKGL--GMNVI-AHDPYAP--ADKARAVGVE----LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl----G~IG~~vA~~lk~~--G~~Vi-~~d~~~~--~~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+ |.||+..++.++.. +++|. ++|+... ...+...|+. +.+++++++ +.|+|++|+|
T Consensus 40 irvgiIG~g~~GG~~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp 117 (479)
T 2nvw_A 40 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 117 (479)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred CEEEEEcccCCCCHHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCC
Confidence 58999999 99999999999876 78876 5788752 2334556763 458999996 6999999999
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=94.79 E-value=0.023 Score=62.41 Aligned_cols=67 Identities=16% Similarity=0.208 Sum_probs=48.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHcC-Ce-----ec---CHHHHhccCCEEEEccCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAVG-VE-----LV---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~g-~~-----~~---~l~ell~~aDvV~l~~Plt 294 (656)
.+|+|+|+|.|.||+.+|+.|...|.+|.++|+..... .+...+ +. .. +++++++++|+|+.++|..
T Consensus 2 ~~k~VlViGaG~iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~ 79 (450)
T 1ff9_A 2 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYT 79 (450)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccc
Confidence 47899999999999999999999999999999864211 111112 21 11 3557788999999999954
|
| >2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.031 Score=59.02 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=61.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-HcCCeec----CH---HHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-AVGVELV----SF---DQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-~~g~~~~----~l---~ell~~aDvV~l~~Plt~~T~ 298 (656)
.|++|.|+|.|.||...++.++.+|.+|++.++... .+.++ ++|...+ +. .++....|+|+-++.....
T Consensus 180 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~g~D~vid~~g~~~~-- 257 (357)
T 2cf5_A 180 PGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSNKKREEALQDLGADDYVIGSDQAKMSELADSLDYVIDTVPVHHA-- 257 (357)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSTTHHHHHHTTSCCSCEEETTCHHHHHHSTTTEEEEEECCCSCCC--
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHcCCceeeccccHHHHHHhcCCCCEEEECCCChHH--
Confidence 588999999999999999999999999999988753 34455 6776321 22 2223357888777763211
Q ss_pred ccccHHHHhcCCCCcEEEEcCC
Q 006212 299 KIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaR 320 (656)
-...+..++++..++.++.
T Consensus 258 ---~~~~~~~l~~~G~iv~~G~ 276 (357)
T 2cf5_A 258 ---LEPYLSLLKLDGKLILMGV 276 (357)
T ss_dssp ---SHHHHTTEEEEEEEEECSC
T ss_pred ---HHHHHHHhccCCEEEEeCC
Confidence 2345566777777777763
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.021 Score=58.87 Aligned_cols=61 Identities=23% Similarity=0.231 Sum_probs=46.4
Q ss_pred CEEEEEecChhHHHHHHHHhc----CCCEEEE-ECCCCChhHHHHcCCeecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKG----LGMNVIA-HDPYAPADKARAVGVELVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~----~G~~Vi~-~d~~~~~~~a~~~g~~~~~l~ell~--~aDvV~l~~Pl 293 (656)
.+|||||+|.||+..++.+.. -++++.+ +|+.. .+...|+...+++++++ +.|+|++|+|.
T Consensus 8 ~rvgiIG~G~iG~~~~~~l~~~~~~~~~~lvav~d~~~---~a~~~g~~~~~~~ell~~~~vD~V~i~tp~ 75 (294)
T 1lc0_A 8 FGVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRRE---LGSLDEVRQISLEDALRSQEIDVAYICSES 75 (294)
T ss_dssp EEEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSSC---CCEETTEEBCCHHHHHHCSSEEEEEECSCG
T ss_pred ceEEEEEEcHHHHHHHHHHhccccCCCEEEEEEECchH---HHHHcCCCCCCHHHHhcCCCCCEEEEeCCc
Confidence 379999999999999988875 3677764 67653 12234555678999986 78999999993
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.78 E-value=0.049 Score=58.48 Aligned_cols=88 Identities=19% Similarity=0.252 Sum_probs=59.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeec------CHHHHh------ccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQAL------ATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Pl 293 (656)
.|.+|.|+|.|.+|...++.++.+|. +|++.|... ..+.++++|+..+ ++.+.+ ...|+|+-++..
T Consensus 213 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~i~~~t~g~g~D~vid~~g~ 292 (404)
T 3ip1_A 213 PGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAKELGADHVIDPTKENFVEAVLDYTNGLGAKLFLEATGV 292 (404)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTCCCSEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHhCCCCCCEEEECCCC
Confidence 58899999999999999999999999 999999775 4566777886422 222221 147788777763
Q ss_pred CccccccccHHHHhcC----CCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKM----KKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~m----K~gailINva 319 (656)
...+. ...+..+ +++..++.++
T Consensus 293 ~~~~~----~~~~~~l~~~~~~~G~iv~~G 318 (404)
T 3ip1_A 293 PQLVW----PQIEEVIWRARGINATVAIVA 318 (404)
T ss_dssp HHHHH----HHHHHHHHHCSCCCCEEEECS
T ss_pred cHHHH----HHHHHHHHhccCCCcEEEEeC
Confidence 21111 1223334 7777777776
|
| >3rui_A Ubiquitin-like modifier-activating enzyme ATG7; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 3t7e_A 3vh3_A 3vh4_A* | Back alignment and structure |
|---|
Probab=94.77 E-value=0.058 Score=57.13 Aligned_cols=60 Identities=17% Similarity=0.314 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECC
Q 006212 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDP 260 (656)
Q Consensus 188 ~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~ 260 (656)
...||.++-|=|-+.| |.-....| ..|++++|.|||.|.+|..+|+.|...|. ++..+|+
T Consensus 5 ~~~~~~~~~lnl~lm~-------------wRll~~~g~~kL~~~~VlIvGaGGlGs~va~~La~aGVg~ItlvD~ 66 (340)
T 3rui_A 5 LKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDN 66 (340)
T ss_dssp HHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHHHHHHHH-------------HhhcchhhHHHHhCCEEEEECCCHHHHHHHHHHHHcCCCEEEEecC
Confidence 4456666655554443 43222223 36899999999999999999999998886 6777775
|
| >3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.02 Score=59.73 Aligned_cols=51 Identities=20% Similarity=0.156 Sum_probs=43.7
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
+.|.+..+|+||+|+.|++.|+++|+||.+++-......+.=+|+++++-+
T Consensus 23 ~iLtv~c~DrpGIVa~VS~~La~~g~NI~d~~q~~d~~~g~FfMr~~~~~~ 73 (302)
T 3o1l_A 23 FRLVIACPDRVGIVAKVSNFLASHNGWITEASHHSDNLSGWFFMRHEIRAD 73 (302)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCCEEEEEEEEETTTTEEEEEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEEeeEEecCCCCeEEEEEEEecC
Confidence 466778999999999999999999999999998766567788888888753
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.069 Score=58.53 Aligned_cols=85 Identities=25% Similarity=0.334 Sum_probs=62.1
Q ss_pred cccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcC--Ceec-CHHHHhccCCEEEEcc
Q 006212 225 VSLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVG--VELV-SFDQALATADFISLHM 291 (656)
Q Consensus 225 ~~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g--~~~~-~l~ell~~aDvV~l~~ 291 (656)
..+.|++|+|+|+.- =...+++.|+..|.+|.+|||....+.....+ +.++ +++++++++|.|++++
T Consensus 329 ~~l~g~~V~vlGlafK~~tdD~ReSpa~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t 408 (444)
T 3vtf_A 329 GGLRGRHVGVLGLAFKPNTDDVRESRGVEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIAT 408 (444)
T ss_dssp TCCTTCEEEEECCSSSSSCCCCTTCHHHHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECS
T ss_pred cccCCCEEEEEeeecCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEcc
Confidence 468999999999862 36779999999999999999987433222333 4544 7999999999999998
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEc
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
+-. +-+.+ + + ++.+|+|+
T Consensus 409 ~h~-ef~~l-d------~-~~~vv~D~ 426 (444)
T 3vtf_A 409 AWP-QYEGL-D------Y-RGKVVVDG 426 (444)
T ss_dssp CCG-GGGGS-C------C-TTCEEEES
T ss_pred CCH-HHhCC-C------c-CCCEEEEC
Confidence 733 22221 1 3 46788885
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=94.71 E-value=0.038 Score=58.31 Aligned_cols=97 Identities=13% Similarity=0.208 Sum_probs=61.6
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHHc--C-----C-ee---cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV--G-----V-EL---VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~~--g-----~-~~---~~l~ell~~aDvV~l~ 290 (656)
....++|+|||.|.||..+|..+...|. ++..+|....... +.++ . . .. .+.+ .+++||+|+++
T Consensus 16 ~~~~~kV~ViGaG~vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~ 94 (331)
T 4aj2_A 16 QVPQNKITVVGVGAVGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIIT 94 (331)
T ss_dssp -CCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEEC
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEc
Confidence 4567899999999999999999876676 8999998642111 1111 1 1 11 1454 59999999998
Q ss_pred cCCCc---cccc-ccc--H-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 291 MPLNP---TTSK-IFN--D-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 291 ~Plt~---~T~~-li~--~-------~~l~~mK~gailINvaRg~ivd 325 (656)
.-... .|+. ++. . +.+....|++++++++ ..+|
T Consensus 95 aG~~~kpG~tR~dL~~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd 140 (331)
T 4aj2_A 95 AGARQQEGESRLNLVQRNVNIFKFIIPNVVKYSPQCKLLIVS--NPVD 140 (331)
T ss_dssp CSCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHH
T ss_pred cCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEec--ChHH
Confidence 75321 1332 221 1 1233357899999997 4444
|
| >1v9l_A Glutamate dehydrogenase; protein-NAD complex, oxidoreductase; HET: NAD; 2.80A {Pyrobaculum islandicum} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=94.69 E-value=0.24 Score=53.85 Aligned_cols=34 Identities=38% Similarity=0.500 Sum_probs=31.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
|.++.|+++.|.|+|++|+.+|+.|..+|.+|++
T Consensus 205 g~~l~gk~vaVqG~GnVG~~aa~~L~e~GakVVa 238 (421)
T 1v9l_A 205 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIA 238 (421)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEE
T ss_pred CCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999999999999999999984
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=94.69 E-value=0.043 Score=59.82 Aligned_cols=63 Identities=16% Similarity=0.274 Sum_probs=47.3
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEE-EECCCCCh-hHH-H---HcC---Ce-ec----CHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVI-AHDPYAPA-DKA-R---AVG---VE-LV----SFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi-~~d~~~~~-~~a-~---~~g---~~-~~----~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+|.||+..++.++.. +++|. ++|+.... +.+ . +.| .. +. +++++++ +.|+|++|+|
T Consensus 21 ~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp 100 (444)
T 2ixa_A 21 VRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSP 100 (444)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCC
T ss_pred ceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCC
Confidence 4799999999999999998875 78875 57877522 221 1 235 33 44 8999997 5899999999
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.08 Score=55.27 Aligned_cols=94 Identities=15% Similarity=0.163 Sum_probs=61.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHcC-------Cee----cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLG--MNVIAHDPYAPADKARAVG-------VEL----VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~g-------~~~----~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+|+|||. |.+|..++..|...| .+|..+|.......+.++. +.. .++++.+++||+|+++.+...
T Consensus 1 mKI~IiGa~G~VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~~ 80 (314)
T 1mld_A 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (314)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcCC
Confidence 37999998 999999999998767 6899999865222222221 122 257888999999999986332
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcCCCchhcH
Q 006212 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVIDE 326 (656)
Q Consensus 296 ~T~~li-------~~-------~~l~~mK~gailINvaRg~ivde 326 (656)
..++- |. +.+....|++++++++ ..+|.
T Consensus 81 -~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~viv~s--NPv~~ 122 (314)
T 1mld_A 81 -KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVNS 122 (314)
T ss_dssp -CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHH
T ss_pred -CCCCcHHHHHHHHHHHHHHHHHHHHhhCCCeEEEEEC--CCcch
Confidence 11111 11 1122235788999974 45554
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.022 Score=62.18 Aligned_cols=63 Identities=11% Similarity=0.160 Sum_probs=49.5
Q ss_pred CEEEEEec----ChhHHHHHHHHhcC--CCEEE-EECCCCC--hhHHHHcCCe----ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGF----GKVGSEVARRAKGL--GMNVI-AHDPYAP--ADKARAVGVE----LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl----G~IG~~vA~~lk~~--G~~Vi-~~d~~~~--~~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 292 (656)
.+|||||+ |.||...++.++.. +++|. ++|+... ...+...|+. +.++++++. +.|+|++|+|
T Consensus 21 irvgiIG~g~~gG~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp 98 (438)
T 3btv_A 21 IRVGFVGLNAAKGWAIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQ 98 (438)
T ss_dssp EEEEEESCCTTSSSTTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSC
T ss_pred CEEEEEcccCCCChHHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCC
Confidence 47999999 99999999999876 78875 5787752 2334555664 458999996 6999999999
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.035 Score=59.00 Aligned_cols=87 Identities=23% Similarity=0.239 Sum_probs=58.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeec------CHHHHhc--------cCCEEEEcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQALA--------TADFISLHM 291 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell~--------~aDvV~l~~ 291 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.++.. ..+.++++|+..+ ++.+.+. ..|+|+-++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~i~~~~~~~~gg~Dvvid~~ 261 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAEEVGATATVDPSAGDVVEAIAGPVGLVPGGVDVVIECA 261 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHHHHTCSEEECTTSSCHHHHHHSTTSSSTTCEEEEEECS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCCEEECCCCcCHHHHHHhhhhccCCCCCEEEECC
Confidence 48899999999999999999999999 999998775 4456677776421 2333332 266776665
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.... .-...+..++++..++.++
T Consensus 262 G~~~-----~~~~~~~~l~~~G~vv~~G 284 (370)
T 4ej6_A 262 GVAE-----TVKQSTRLAKAGGTVVILG 284 (370)
T ss_dssp CCHH-----HHHHHHHHEEEEEEEEECS
T ss_pred CCHH-----HHHHHHHHhccCCEEEEEe
Confidence 4111 1133455566666666665
|
| >3q98_A Transcarbamylase; rossmann fold, transferase; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.38 Score=51.93 Aligned_cols=66 Identities=27% Similarity=0.361 Sum_probs=50.4
Q ss_pred ccCCCEEEEEec-----C---hhHHHHHHHHhcCCCEEEEECCCC---ChhH-------HHHcCCee---cCHHHHhccC
Q 006212 226 SLVGKTLAVMGF-----G---KVGSEVARRAKGLGMNVIAHDPYA---PADK-------ARAVGVEL---VSFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIGl-----G---~IG~~vA~~lk~~G~~Vi~~d~~~---~~~~-------a~~~g~~~---~~l~ell~~a 284 (656)
.|.|++|+|+|- | ++..+++..+..+|++|....|.. ..+. +.+.|..+ .++++.+++|
T Consensus 188 ~l~Glkva~vgd~~~~~G~~nnVa~Sli~~~~~lG~~v~~~~P~~~~~~~~~~~~a~~~a~~~G~~i~~~~d~~eav~~a 267 (399)
T 3q98_A 188 NLKGKKIAMTWAYSPSYGKPLSVPQGIIGLMTRFGMDVTLAHPEGYDLIPDVVEVAKNNAKASGGSFRQVTSMEEAFKDA 267 (399)
T ss_dssp GGTTCEEEEECCCCSSCCCCTHHHHHHHHHHGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHHTTC
T ss_pred ccCCCEEEEEEecccccCcchHHHHHHHHHHHHcCCEEEEECCcccCCCHHHHHHHHHHHHHcCCEEEEEcCHHHHhCCC
Confidence 478999999973 4 788999999999999999988752 2221 23456532 4899999999
Q ss_pred CEEEEcc
Q 006212 285 DFISLHM 291 (656)
Q Consensus 285 DvV~l~~ 291 (656)
|+|..-+
T Consensus 268 DvVytd~ 274 (399)
T 3q98_A 268 DIVYPKS 274 (399)
T ss_dssp SEEEECC
T ss_pred CEEEecC
Confidence 9998743
|
| >1kyq_A Met8P, siroheme biosynthesis protein Met8; homodimer, oxidoreductase, lyase; HET: NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.2.1.11 e.37.1.1 | Back alignment and structure |
|---|
Probab=94.62 E-value=0.011 Score=60.86 Aligned_cols=39 Identities=21% Similarity=0.239 Sum_probs=36.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..++.||+|.|||.|.+|...++.|...|.+|.+++|..
T Consensus 8 ~~~l~~k~VLVVGgG~va~rka~~Ll~~Ga~VtViap~~ 46 (274)
T 1kyq_A 8 AHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (274)
T ss_dssp EECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred EEEcCCCEEEEECCcHHHHHHHHHHHhCCCEEEEEcCCC
Confidence 467899999999999999999999999999999999865
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=94.55 E-value=0.056 Score=57.39 Aligned_cols=87 Identities=25% Similarity=0.324 Sum_probs=58.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-cC-------HHHHhc-----cCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-VS-------FDQALA-----TADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~-----~aDvV~l~~P 292 (656)
.|.+|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|+.. ++ +.+.+. ..|+|+-++.
T Consensus 193 ~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g 272 (378)
T 3uko_A 193 PGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIG 272 (378)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCC
Confidence 58899999999999999999999999 899999776 456677778642 12 222221 3677766665
Q ss_pred CCccccccccHHHHhcCCCC-cEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKG-VRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~g-ailINva 319 (656)
... .-...+..++++ ..++.++
T Consensus 273 ~~~-----~~~~~~~~l~~g~G~iv~~G 295 (378)
T 3uko_A 273 NVS-----VMRAALECCHKGWGTSVIVG 295 (378)
T ss_dssp CHH-----HHHHHHHTBCTTTCEEEECS
T ss_pred CHH-----HHHHHHHHhhccCCEEEEEc
Confidence 211 113345556664 6666665
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.53 E-value=0.1 Score=54.93 Aligned_cols=106 Identities=17% Similarity=0.174 Sum_probs=66.0
Q ss_pred EEEEEecChhHHHHHHHHhc---------CCCEEEE-ECCCCC------hhH--HH--HcCCeec--CHHHHhc--cCCE
Q 006212 231 TLAVMGFGKVGSEVARRAKG---------LGMNVIA-HDPYAP------ADK--AR--AVGVELV--SFDQALA--TADF 286 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~---------~G~~Vi~-~d~~~~------~~~--a~--~~g~~~~--~l~ell~--~aDv 286 (656)
+|||||+|.||+.+++.++. .+.+|.+ +|++.. ... +. ..+..+. ++++++. +.|+
T Consensus 4 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDv 83 (327)
T 3do5_A 4 KIAIVGFGTVGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDV 83 (327)
T ss_dssp EEEEECCSHHHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSE
T ss_pred EEEEEeccHHHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCE
Confidence 79999999999999999875 4777776 566531 111 11 1122222 8999985 5899
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhcCC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSGV 337 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~g~ 337 (656)
|+.|+|....+.. .-.-....|+.|.-++-...+.+. ..+.|.++.++..
T Consensus 84 Vv~~tp~~~h~~~-a~~~~~~aL~aGkhVv~~NKkpla~~~~eL~~~A~~~g 134 (327)
T 3do5_A 84 LIEASVTRVDGGE-GVNYIREALKRGKHVVTSNKGPLVAEFHGLMSLAERNG 134 (327)
T ss_dssp EEECCCCC----C-HHHHHHHHHTTTCEEEECCSHHHHHHHHHHHHHHHHTT
T ss_pred EEECCCCcccchh-HHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHhhC
Confidence 9999994421111 112234557888777776555554 4566666555543
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=94.53 E-value=0.063 Score=50.75 Aligned_cols=66 Identities=17% Similarity=0.188 Sum_probs=47.5
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhH-HHHcCCee-----c---CHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADK-ARAVGVEL-----V---SFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~-a~~~g~~~-----~---~l~ell~~aDvV~l~~Plt 294 (656)
++++.|.|. |.||+.+++.|...|.+|++.++...... ....++.. . ++.++++.+|+|+.++...
T Consensus 3 ~~~ilVtGatG~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~d~vi~~a~~~ 78 (206)
T 1hdo_A 3 VKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGTR 78 (206)
T ss_dssp CCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCCT
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCCeEEEEEeChhhcccccCCceEEEEecCCCHHHHHHHHcCCCEEEECccCC
Confidence 479999997 99999999999999999999987642111 00123322 1 3556788899998887643
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.059 Score=56.60 Aligned_cols=88 Identities=16% Similarity=0.171 Sum_probs=59.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-------C-HHHH---h-----ccCCEEEEc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-------S-FDQA---L-----ATADFISLH 290 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-------~-l~el---l-----~~aDvV~l~ 290 (656)
.|++|.|+|.|.+|...++.++.+|.+|++.++.. ..+.++++|+..+ + .+++ . ...|+|+-+
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~i~~~~~~~~g~g~D~vid~ 247 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDC 247 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEEC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCCCEEEcCcccccHHHHHHHHhccccCCCCCEEEEC
Confidence 48899999999999999999999999999998765 3455667776321 1 1122 2 246777776
Q ss_pred cCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 291 MPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 291 ~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
+.... + -...+..++++..++.++.
T Consensus 248 ~g~~~-~----~~~~~~~l~~~G~iv~~G~ 272 (352)
T 1e3j_A 248 SGNEK-C----ITIGINITRTGGTLMLVGM 272 (352)
T ss_dssp SCCHH-H----HHHHHHHSCTTCEEEECSC
T ss_pred CCCHH-H----HHHHHHHHhcCCEEEEEec
Confidence 65211 1 1334556777777777753
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=94.46 E-value=0.036 Score=56.87 Aligned_cols=85 Identities=20% Similarity=0.327 Sum_probs=57.6
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCH------HHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSF------DQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l------~ell~~aDvV~l~~Plt~~T~ 298 (656)
.|++|.|+|. |.+|...++.++.+|++|++.+++. ..+.+++.|... .+. .+.+...|+|+- +.. +
T Consensus 125 ~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~~~~~~~~~~~~~~~~~~d~vid-~g~-~--- 199 (302)
T 1iz0_A 125 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLE-VRG-K--- 199 (302)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEE-CSC-T---
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCCCEEEECCcchhHHHHhcCceEEEE-CCH-H---
Confidence 4889999998 9999999999999999999998764 345566677642 121 122245677766 552 1
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
.-...+..|+++..++.++
T Consensus 200 --~~~~~~~~l~~~G~~v~~g 218 (302)
T 1iz0_A 200 --EVEESLGLLAHGGRLVYIG 218 (302)
T ss_dssp --THHHHHTTEEEEEEEEEC-
T ss_pred --HHHHHHHhhccCCEEEEEe
Confidence 1244556667766666665
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.03 Score=54.42 Aligned_cols=63 Identities=13% Similarity=0.069 Sum_probs=44.6
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeec----cCccEEEEEEeCCCC--CHHHHHHHh
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF----RRNHGIMAIGVDEEP--NQDSLKEIG 619 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~----~gg~al~~i~~D~~~--~~e~l~~L~ 619 (656)
..+.|.+..+|+||+++.|+++|+++|+||.+++..... ..+.-.|.+.++-+. +.++.+.|.
T Consensus 92 ~~~iltv~g~DrpGiva~Vt~~La~~g~nI~~~~~~t~~~~~~~~~~F~m~~~~~~~~~~~~~l~~~l~ 160 (195)
T 2nyi_A 92 REYELYVEGPDSEGIVEAVTAVLAKKGANIVELETETLPAPFAGFTLFRMGSRVAFPFPLYQEVVTALS 160 (195)
T ss_dssp EEEEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEEECSSTTCEEEEEEEEEEEEGGGHHHHHHHHH
T ss_pred cEEEEEEEeCCCcCHHHHHHHHHHHcCCCEEEceeeecccccCCCCeEEEEEEEEcCCCccHHHHHHHH
Confidence 346677788999999999999999999999999987443 334556666665321 134444444
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.45 E-value=0.038 Score=58.05 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=57.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeec------CHHHHh----c--cCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQAL----A--TADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell----~--~aDvV~l~~Pl 293 (656)
.|.+|.|+|.|.||...++.++..|. +|++.|+.. ..+.++++|+..+ ++.+.+ . ..|+|+-++..
T Consensus 166 ~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~g~D~v~d~~g~ 245 (352)
T 3fpc_A 166 LGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIALEYGATDIINYKNGDIVEQILKATDGKGVDKVVIAGGD 245 (352)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHHHHTCCEEECGGGSCHHHHHHHHTTTCCEEEEEECSSC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCceEEcCCCcCHHHHHHHHcCCCCCCEEEECCCC
Confidence 48899999999999999999999999 899999875 3566777776421 122211 1 35666665542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINva 319 (656)
.. .-...+..++++..++.++
T Consensus 246 ~~-----~~~~~~~~l~~~G~~v~~G 266 (352)
T 3fpc_A 246 VH-----TFAQAVKMIKPGSDIGNVN 266 (352)
T ss_dssp TT-----HHHHHHHHEEEEEEEEECC
T ss_pred hH-----HHHHHHHHHhcCCEEEEec
Confidence 11 1133445566666666664
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.025 Score=54.06 Aligned_cols=35 Identities=20% Similarity=0.266 Sum_probs=31.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|+++.|+| .|.||..+++.++..|.+|++.++..
T Consensus 38 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~ 73 (198)
T 1pqw_A 38 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSD 73 (198)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSH
T ss_pred CCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCH
Confidence 588999999 69999999999999999999998764
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=94.40 E-value=0.042 Score=57.32 Aligned_cols=106 Identities=20% Similarity=0.258 Sum_probs=69.9
Q ss_pred cccCCCEEEEE-ec-ChhHHHHHHHHhcCCCEEE-EECCCCChhHHHHcCCeec-CHHHHhc--cCCEEEEccCCCcccc
Q 006212 225 VSLVGKTLAVM-GF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTS 298 (656)
Q Consensus 225 ~~l~gktvGII-Gl-G~IG~~vA~~lk~~G~~Vi-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Plt~~T~ 298 (656)
.-+..+++.|| |+ |+.|+.+++.++.+|++++ ..||..... .-.|+... +++++.+ ..|++++++|. +...
T Consensus 9 ~l~~~~siaVV~Gasg~~G~~~~~~l~~~G~~~v~~VnP~~~g~--~i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~ 85 (305)
T 2fp4_A 9 LYVDKNTKVICQGFTGKQGTFHSQQALEYGTNLVGGTTPGKGGK--THLGLPVFNTVKEAKEQTGATASVIYVPP-PFAA 85 (305)
T ss_dssp GCCCTTCEEEEETTTSHHHHHHHHHHHHHTCEEEEEECTTCTTC--EETTEEEESSHHHHHHHHCCCEEEECCCH-HHHH
T ss_pred HHhCCCcEEEEECCCCCHHHHHHHHHHHCCCcEEEEeCCCcCcc--eECCeeeechHHHhhhcCCCCEEEEecCH-HHHH
Confidence 44667889999 99 9999999999999999955 577764111 12466655 7999988 89999999993 2223
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCch-hcHHHHHHhHhcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGV-IDEEALVRALDSG 336 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~i-vde~aL~~aL~~g 336 (656)
..+. +.++ ..- ..+++.+.|-- -++..+.+..++.
T Consensus 86 ~~~~-e~i~-~Gi-~~iv~~t~G~~~~~~~~l~~~a~~~ 121 (305)
T 2fp4_A 86 AAIN-EAID-AEV-PLVVCITEGIPQQDMVRVKHRLLRQ 121 (305)
T ss_dssp HHHH-HHHH-TTC-SEEEECCCCCCHHHHHHHHHHHTTC
T ss_pred HHHH-HHHH-CCC-CEEEEECCCCChHHHHHHHHHHHhc
Confidence 3332 2222 222 23466666532 2344777777665
|
| >3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.048 Score=56.45 Aligned_cols=51 Identities=16% Similarity=0.163 Sum_probs=44.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEE 609 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~ 609 (656)
+.|.+..+|+||+++.|++.|+++|+||.+++-......+.=.|+++++-+
T Consensus 8 ~vLtv~c~Dr~GIVa~Vs~~La~~g~NI~d~~q~~d~~~g~Ffmr~~~~~~ 58 (287)
T 3nrb_A 8 YVLSLACQDAPGIVSEVSTFLFNNGANIVEAEQFNDEDSSKFFMRVSVEIP 58 (287)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTTTEEEEEEEEECC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHCCCCEEeeeeeecCCCCeEEEEEEEEcC
Confidence 567778999999999999999999999999998766667788888888754
|
| >3cps_A Glyceraldehyde 3-phosphate dehydrogenase; GAPDH, glycolysis, malaria, structural genomics; HET: NAD; 1.90A {Cryptosporidium parvum iowa II} PDB: 1vsv_A* 1vsu_A* 3chz_A 3cie_A* 3cif_A* 3sth_A* | Back alignment and structure |
|---|
Probab=94.34 E-value=0.077 Score=56.47 Aligned_cols=85 Identities=22% Similarity=0.373 Sum_probs=54.3
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEEC-CCCChhH-HH--Hc----C-------------------Ceec---CHHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHD-PYAPADK-AR--AV----G-------------------VELV---SFDQ 279 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d-~~~~~~~-a~--~~----g-------------------~~~~---~l~e 279 (656)
+|||+|+|+||+.+.+.|... +++|.+.+ |....+. +. +. | +... ++++
T Consensus 19 kVgI~G~G~iGr~llR~l~~~p~veivaindp~~~~~~~a~ll~~ds~hg~~~~~v~~~~~~l~v~g~~i~v~~~~dp~~ 98 (354)
T 3cps_A 19 TLGINGFGRIGRLVLRACMERNDITVVAINDPFMDVEYMAYLLKYDSVHGNFNGTVEVSGKDLCINGKVVKVFQAKDPAE 98 (354)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSCEEEEEECTTSCHHHHHHHHHCCTTTCSCSSCEEECC-CEEETTEEEEEECCSCGGG
T ss_pred EEEEECCCHHHHHHHHHHHcCCCeEEEEecCCCCChhHhhhhhcccccCCCCCCcEEEeCCEEEECCeEEEEEecCChHH
Confidence 899999999999999998876 78887764 4443321 11 00 0 0111 3444
Q ss_pred H-h--ccCCEEEEccCCCccccccccHHHHhcCCCCc--EEEEcCC
Q 006212 280 A-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGV--RIVNVAR 320 (656)
Q Consensus 280 l-l--~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga--ilINvaR 320 (656)
+ + ..+|+|+.|+|.-.. . +..-..++.|+ ++|+.+.
T Consensus 99 i~w~~~~vDvV~eatg~~~s-~----e~a~~~l~~GakkvVId~pa 139 (354)
T 3cps_A 99 IPWGASGAQIVCESTGVFTT-E----EKASLHLKGGAKKVIISAPP 139 (354)
T ss_dssp CCHHHHTCCEEEECSSSCCS-H----HHHGGGGTTTCSEEEESSCC
T ss_pred CCcccCCCCEEEECCCchhh-H----HHHHHHHHcCCcEEEEeCCC
Confidence 3 2 579999999994431 1 22223467788 9999864
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.04 Score=55.34 Aligned_cols=66 Identities=18% Similarity=0.246 Sum_probs=47.6
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCeec--CHHHH-hccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVELV--SFDQA-LATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~~--~l~el-l~~aDvV~l~~Plt 294 (656)
.++|.|.|.|.||+.+++.|...|++|++.++... .......+++.+ |+.++ +..+|+|+.+....
T Consensus 5 ~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~d~vi~~a~~~ 74 (286)
T 3ius_A 5 TGTLLSFGHGYTARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPSLDGVTHLLISTAPD 74 (286)
T ss_dssp CCEEEEETCCHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCCCTTCCEEEECCCCB
T ss_pred cCcEEEECCcHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccccCCCCEEEECCCcc
Confidence 37899999999999999999999999999988753 223333455432 22211 67888888777643
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=94.31 E-value=0.069 Score=59.13 Aligned_cols=113 Identities=18% Similarity=0.198 Sum_probs=69.0
Q ss_pred CCEEEEEecChhH--HHHHHHHh---cC-CCEEEEECCCCCh-h----HHH----HcC----Cee-cCHHHHhccCCEEE
Q 006212 229 GKTLAVMGFGKVG--SEVARRAK---GL-GMNVIAHDPYAPA-D----KAR----AVG----VEL-VSFDQALATADFIS 288 (656)
Q Consensus 229 gktvGIIGlG~IG--~~vA~~lk---~~-G~~Vi~~d~~~~~-~----~a~----~~g----~~~-~~l~ell~~aDvV~ 288 (656)
..+|+|||.|.+| .++|..+. ++ |.+|..||..... + ... ..+ +.. .++++.+++||+|+
T Consensus 3 ~~KIaVIGAGsVg~g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VI 82 (480)
T 1obb_A 3 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 82 (480)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CCEEEEECCCchHHHHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEE
Confidence 4689999999975 55566653 34 8899999987521 1 111 111 122 37888999999999
Q ss_pred EccCCC---------------------cccc-------ccc----c-------HHHHhcCCCCcEEEEcCCCchhcHHHH
Q 006212 289 LHMPLN---------------------PTTS-------KIF----N-------DETFAKMKKGVRIVNVARGGVIDEEAL 329 (656)
Q Consensus 289 l~~Plt---------------------~~T~-------~li----~-------~~~l~~mK~gailINvaRg~ivde~aL 329 (656)
+++|.. .+|. ++. + .+.+....|+++++|++---=+-..++
T Consensus 83 iaagv~~~~~~~~dE~ip~K~g~~~~l~dt~g~g~~~~G~~~~~rni~i~~~i~~~i~~~~P~A~ii~~TNPvdi~t~~~ 162 (480)
T 1obb_A 83 NTAMVGGHTYLEKVRQIGEKYGYYRGIDAQEFNMVSDYYTFSNYNQLKYFVDIARKIEKLSPKAWYLQAANPIFEGTTLV 162 (480)
T ss_dssp ECCCTTHHHHHHHHHHHHHHTTCTTCTTCBTTBCCTTCCSSSCHHHHHHHHHHHHHHHHHCTTCEEEECSSCHHHHHHHH
T ss_pred ECCCcccccccccccccccccccccchhhhcCCccchhhhHHhhhhHHHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHH
Confidence 999731 1110 110 0 123334578999999974322234555
Q ss_pred HHhHhcCCeEEEE
Q 006212 330 VRALDSGVVAQAA 342 (656)
Q Consensus 330 ~~aL~~g~i~gA~ 342 (656)
.+ +...++.|.+
T Consensus 163 ~k-~p~~rviG~c 174 (480)
T 1obb_A 163 TR-TVPIKAVGFC 174 (480)
T ss_dssp HH-HSCSEEEEEC
T ss_pred HH-CCCCcEEecC
Confidence 44 6667887854
|
| >4e4t_A Phosphoribosylaminoimidazole carboxylase, ATPase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.55A {Burkholderia ambifaria} PDB: 3uvz_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.062 Score=58.26 Aligned_cols=63 Identities=22% Similarity=0.255 Sum_probs=46.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCC---eecC---HHHHhccCCEEE
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV---ELVS---FDQALATADFIS 288 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~---~~~~---l~ell~~aDvV~ 288 (656)
-+.||+|+|+|-|.+|+.+++.++.+|++|+++|++.. ......... .+.+ +.++++++|+|+
T Consensus 32 ~~~~~~IlIlG~G~lg~~~~~aa~~lG~~v~v~d~~~~~p~~~~ad~~~~~~~~d~~~l~~~a~~~D~V~ 101 (419)
T 4e4t_A 32 ILPGAWLGMVGGGQLGRMFCFAAQSMGYRVAVLDPDPASPAGAVADRHLRAAYDDEAALAELAGLCEAVS 101 (419)
T ss_dssp CCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCTTCHHHHHSSEEECCCTTCHHHHHHHHHHCSEEE
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCCcCchhhhCCEEEECCcCCHHHHHHHHhcCCEEE
Confidence 46799999999999999999999999999999998752 211111111 1122 456678899997
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=94.28 E-value=0.053 Score=57.32 Aligned_cols=45 Identities=31% Similarity=0.347 Sum_probs=38.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.||...++.++.+|.+|++.++.. ..+.++++|+
T Consensus 189 ~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 234 (363)
T 3uog_A 189 AGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAFALGA 234 (363)
T ss_dssp TTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHHHcCC
Confidence 58999999999999999999999999999998764 3455666665
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.061 Score=56.19 Aligned_cols=87 Identities=16% Similarity=0.242 Sum_probs=55.7
Q ss_pred CEEEEEecChhHHHHHHHHhc-C-CCEEE-EECCCC-C--hhHHHHcCCee--cCHHHHh-----ccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-L-GMNVI-AHDPYA-P--ADKARAVGVEL--VSFDQAL-----ATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~-G~~Vi-~~d~~~-~--~~~a~~~g~~~--~~l~ell-----~~aDvV~l~~Plt~~ 296 (656)
.+|||||+|.||+.+++.+.. + ++++. ++|+.. . ...++..|+.. .+.++++ .+.|+|+.|+| +.
T Consensus 5 irVaIIG~G~iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp-~~- 82 (312)
T 1nvm_B 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATS-AS- 82 (312)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSC-HH-
T ss_pred CEEEEEcCcHHHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCC-hH-
Confidence 479999999999999999844 4 67655 467764 2 34456777753 3577775 45899999999 32
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
...-+-...++ .++|..+++..
T Consensus 83 ~h~~~a~~al~-a~~Gk~Vi~ek 104 (312)
T 1nvm_B 83 AHVQNEALLRQ-AKPGIRLIDLT 104 (312)
T ss_dssp HHHHHHHHHHH-HCTTCEEEECS
T ss_pred HHHHHHHHHHH-hCCCCEEEEcC
Confidence 22111122221 23377777643
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=94.22 E-value=0.044 Score=52.77 Aligned_cols=48 Identities=13% Similarity=0.156 Sum_probs=39.1
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
+.|.+..+|+||++++|+++|+++|+||...+.... .+.-.|++.++.
T Consensus 7 ~~itv~~~DrpGiva~vt~~La~~g~NI~d~~~~~~--~~~f~~~~~v~~ 54 (192)
T 1u8s_A 7 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMF--GKEFTLLMLISG 54 (192)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEE--TTEEEEEEEEEE
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHCCCCEEeeeeeec--CCceEEEEEEec
Confidence 567778899999999999999999999999999763 355555666653
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.031 Score=54.95 Aligned_cols=67 Identities=12% Similarity=0.172 Sum_probs=46.9
Q ss_pred cCCCEEEEEe-cChhHHHHHHHHhcCC-CEEEEECCCCCh-hHHHHcCCee-----c---CHHHHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMG-FGKVGSEVARRAKGLG-MNVIAHDPYAPA-DKARAVGVEL-----V---SFDQALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~d~~~~~-~~a~~~g~~~-----~---~l~ell~~aDvV~l~~Pl 293 (656)
...|+|.|.| .|.||+.+++.|...| ++|+++++.... ......++.. . +++++++.+|+|+.++..
T Consensus 21 ~~mk~vlVtGatG~iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 21 GHMKNVLILGAGGQIARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp -CCEEEEEETTTSHHHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred CcccEEEEEeCCcHHHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 4468999999 7999999999999999 899999876421 1111112221 1 356678899999877763
|
| >2bma_A Glutamate dehydrogenase (NADP+); malaria, drug design, analysis, oligomer organization, oxidoreductase; 2.7A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.18 E-value=0.2 Score=55.08 Aligned_cols=34 Identities=21% Similarity=0.306 Sum_probs=31.7
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
|.++.|+||.|-|+|++|+..|+.|...|.+|++
T Consensus 247 G~~l~g~~vaVqG~GnVG~~~a~~L~~~GakvVa 280 (470)
T 2bma_A 247 NIPVEKQTAVVSGSGNVALYCVQKLLHLNVKVLT 280 (470)
T ss_dssp TCCGGGCEEEEECSSHHHHHHHHHHHHTTCEECE
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHCCCEEEE
Confidence 5678999999999999999999999999999984
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.17 E-value=0.04 Score=57.66 Aligned_cols=87 Identities=14% Similarity=0.113 Sum_probs=56.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcC--CCEEEEECCCC-ChhHHHHcCCee-cCHHH---H---hc---cCCEEEEccCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGL--GMNVIAHDPYA-PADKARAVGVEL-VSFDQ---A---LA---TADFISLHMPLN 294 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~--G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~e---l---l~---~aDvV~l~~Plt 294 (656)
.|++|.|+|.|.+|...++.++.+ |.+|++.+++. ..+.++++|... ++..+ . +. ..|+|+-++...
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~g~g~D~vid~~g~~ 249 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFALELGADYVSEMKDAESLINKLTDGLGASIAIDLVGTE 249 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHTCSEEECHHHHHHHHHHHHTTCCEEEEEESSCCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHHhCCCEEeccccchHHHHHhhcCCCccEEEECCCCh
Confidence 689999999999999999999998 99999999765 445566777642 23221 1 11 356666655421
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
. . -...+..|+++..++.++
T Consensus 250 ~----~-~~~~~~~l~~~G~iv~~g 269 (344)
T 2h6e_A 250 E----T-TYNLGKLLAQEGAIILVG 269 (344)
T ss_dssp H----H-HHHHHHHEEEEEEEEECC
T ss_pred H----H-HHHHHHHhhcCCEEEEeC
Confidence 0 0 123344455555555554
|
| >1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1 | Back alignment and structure |
|---|
Probab=94.15 E-value=0.047 Score=57.67 Aligned_cols=87 Identities=21% Similarity=0.342 Sum_probs=53.8
Q ss_pred CEEEEEecChhHHHHHHHHhc-CCCEEEEE-CCCCChhHHH---H-------c-C---------------Ceec---CHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-LGMNVIAH-DPYAPADKAR---A-------V-G---------------VELV---SFD 278 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-~G~~Vi~~-d~~~~~~~a~---~-------~-g---------------~~~~---~l~ 278 (656)
.+|||+|+|+||+.+++.+.. -+++|.+. |+....+... + . + +... +++
T Consensus 4 ikVgI~G~G~iGr~~~R~l~~~~~vevvaI~d~~~~~~~~a~l~~~ds~~g~~~~~~~~~~~~l~v~g~~i~v~~~~d~~ 83 (335)
T 1u8f_O 4 VKVGVNGFGRIGRLVTRAAFNSGKVDIVAINDPFIDLNYMVYMFQYDSTHGKFHGTVKAENGKLVINGNPITIFQERDPS 83 (335)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSSEEEEEECSSSCHHHHHHHHHCCTTTCSCSSCEEEETTEEEETTEEEEEECCSSGG
T ss_pred eEEEEEccCHHHHHHHHHHHcCCCcEEEEecCCCCCHHHHHHHhhcccccCCCCCceEEcCCeEEECCeEEEEEecCCHH
Confidence 489999999999999999875 36888775 5422222111 1 0 0 0111 455
Q ss_pred HH-h--ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 279 QA-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 279 el-l--~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
++ + ..+|+|+.|+|.... + +..-..++.|+..|+++-.
T Consensus 84 ~l~~~~~~vDvV~eatg~~~~-~----e~a~~~l~aGak~V~iSap 124 (335)
T 1u8f_O 84 KIKWGDAGAEYVVESTGVFTT-M----EKAGAHLQGGAKRVIISAP 124 (335)
T ss_dssp GCCTTTTTCCEEEECSSSCCS-H----HHHGGGGGGTCSEEEESSC
T ss_pred HCccccCCCCEEEECCCchhh-H----HHHHHHHhCCCeEEEeccC
Confidence 55 2 579999999994421 1 2223346778777777644
|
| >3keo_A Redox-sensing transcriptional repressor REX; DNA binding protein, winged helix, rossmann fold, NAD+; HET: NAD; 1.50A {Streptococcus agalactiae serogroup iiiorganism_taxid} PDB: 3keq_A* 3ket_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.024 Score=56.18 Aligned_cols=66 Identities=14% Similarity=0.223 Sum_probs=45.3
Q ss_pred CCEEEEEecChhHHHHHHHH--hcCCCEEEE-ECCCCC-hhHH-HHcCCeec---CHHHHhc--cCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRA--KGLGMNVIA-HDPYAP-ADKA-RAVGVELV---SFDQALA--TADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~l--k~~G~~Vi~-~d~~~~-~~~a-~~~g~~~~---~l~ell~--~aDvV~l~~Plt 294 (656)
.++++|+|.|++|+.+++.+ ...|+++.+ +|..+. ..-. .-.|+... +++++++ +.|.+++|+|..
T Consensus 84 ~~~V~IvGaG~lG~aLa~~~~~~~~g~~iVg~~D~dp~~kiG~~~i~GvpV~~~~dL~~~v~~~~Id~vIIAvPs~ 159 (212)
T 3keo_A 84 TTNVMLVGCGNIGRALLHYRFHDRNKMQISMAFDLDSNDLVGKTTEDGIPVYGISTINDHLIDSDIETAILTVPST 159 (212)
T ss_dssp CEEEEEECCSHHHHHHTTCCCCTTSSEEEEEEEECTTSTTTTCBCTTCCBEEEGGGHHHHC-CCSCCEEEECSCGG
T ss_pred CCEEEEECcCHHHHHHHHhhhcccCCeEEEEEEeCCchhccCceeECCeEEeCHHHHHHHHHHcCCCEEEEecCch
Confidence 35799999999999999974 356899887 465433 2111 12355432 6777776 499999999943
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=94.15 E-value=0.054 Score=56.75 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=55.2
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-----CHHHH----hc--cCCEEEEccCCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-----SFDQA----LA--TADFISLHMPLN 294 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-----~l~el----l~--~aDvV~l~~Plt 294 (656)
.|++|.|+|. |.||...++.++.+|.+|++.+++. ..+.++++|...+ ++.+. .. ..|+|+-|+...
T Consensus 159 ~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga~~v~~~~~~~~~~v~~~~~~~g~Dvvid~~g~~ 238 (342)
T 4eye_A 159 AGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVKSVGADIVLPLEEGWAKAVREATGGAGVDMVVDPIGGP 238 (342)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEESSTTHHHHHHHHTTTSCEEEEEESCC--
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCcEEecCchhHHHHHHHHhCCCCceEEEECCchh
Confidence 5899999998 9999999999999999999998765 4456666665321 12111 11 356666555421
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
.-...+..|+++..++.++
T Consensus 239 ------~~~~~~~~l~~~G~iv~~G 257 (342)
T 4eye_A 239 ------AFDDAVRTLASEGRLLVVG 257 (342)
T ss_dssp ------CHHHHHHTEEEEEEEEEC-
T ss_pred ------HHHHHHHhhcCCCEEEEEE
Confidence 1233445556666666554
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.12 E-value=0.036 Score=58.72 Aligned_cols=45 Identities=27% Similarity=0.301 Sum_probs=37.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+|.|.||...++.++.+|. +|++.|+.. ..+.++++|.
T Consensus 190 ~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~lGa 236 (371)
T 1f8f_A 190 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 236 (371)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC
Confidence 48899999999999999999999999 799998764 3455666665
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.049 Score=57.06 Aligned_cols=88 Identities=20% Similarity=0.192 Sum_probs=57.0
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCee-c------CHHHHhc-----cCCEEEEccCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVEL-V------SFDQALA-----TADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~~-~------~l~ell~-----~aDvV~l~~Pl 293 (656)
.|+++.|+|. |.||..+++.++..|.+|++.+++.. .+.+++.|... . ++.+.+. ..|+|+.++..
T Consensus 169 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~ 248 (347)
T 2hcy_A 169 AGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVS 248 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCc
Confidence 4889999999 89999999999999999999987653 34555666421 1 2222222 35666666542
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaR 320 (656)
.. .-...+..|+++..+++++.
T Consensus 249 ~~-----~~~~~~~~l~~~G~iv~~g~ 270 (347)
T 2hcy_A 249 EA-----AIEASTRYVRANGTTVLVGM 270 (347)
T ss_dssp HH-----HHHHHTTSEEEEEEEEECCC
T ss_pred HH-----HHHHHHHHHhcCCEEEEEeC
Confidence 11 11334455666666666653
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.091 Score=50.58 Aligned_cols=64 Identities=20% Similarity=0.242 Sum_probs=46.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeec--CHH----HHhccCCEEEEccCC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV--SFD----QALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~--~l~----ell~~aDvV~l~~Pl 293 (656)
++|.|.|. |.||+.+++.|.+.|++|++.++.... ......++..+ |+. +.+..+|+|+.++..
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 36889987 999999999999999999999886422 11112344332 332 567889999888764
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=94.05 E-value=0.048 Score=56.91 Aligned_cols=86 Identities=16% Similarity=0.285 Sum_probs=57.9
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-----C---HHHH-hccCCEEEEccCCCccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----S---FDQA-LATADFISLHMPLNPTTSK 299 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-----~---l~el-l~~aDvV~l~~Plt~~T~~ 299 (656)
.+++.|+|+|.+|+.+|+.|...|. |++.|++...-...+.++..+ + |+++ +++||.|+++++.. ..+
T Consensus 115 ~~~viI~G~G~~g~~l~~~L~~~g~-v~vid~~~~~~~~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d--~~n 191 (336)
T 1lnq_A 115 SRHVVICGWSESTLECLRELRGSEV-FVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESD--SET 191 (336)
T ss_dssp -CEEEEESCCHHHHHHHTTGGGSCE-EEEESCGGGHHHHHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSH--HHH
T ss_pred cCCEEEECCcHHHHHHHHHHHhCCc-EEEEeCChhhhhHHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCcc--HHH
Confidence 5689999999999999999999999 999998763222445566432 2 3344 77899999988733 233
Q ss_pred cccHHHHhcCCCCcEEEE
Q 006212 300 IFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 300 li~~~~l~~mK~gailIN 317 (656)
+.-......+.+...++-
T Consensus 192 ~~~~~~ar~~~~~~~iia 209 (336)
T 1lnq_A 192 IHCILGIRKIDESVRIIA 209 (336)
T ss_dssp HHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCCeEEE
Confidence 333444555666544443
|
| >1bgv_A Glutamate dehydrogenase; oxidoreductase; HET: GLU; 1.90A {Clostridium symbiosum} SCOP: c.2.1.7 c.58.1.1 PDB: 1hrd_A 1k89_A 1aup_A 2yfh_A | Back alignment and structure |
|---|
Probab=94.04 E-value=0.24 Score=54.27 Aligned_cols=34 Identities=38% Similarity=0.636 Sum_probs=31.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~ 257 (656)
|.++.|+|+.|.|+|++|+.+|+.|...|.+|++
T Consensus 225 G~~l~g~~v~VqG~GnVG~~~a~~L~~~GakvVa 258 (449)
T 1bgv_A 225 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVT 258 (449)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEE
T ss_pred cCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEE
Confidence 5689999999999999999999999999999986
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.073 Score=55.42 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=57.9
Q ss_pred EEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhH--HHH-------c--CC--ee-cCHHHHhccCCEEEEccCCCc
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADK--ARA-------V--GV--EL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~--a~~-------~--g~--~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
+|+|||.|.+|..+|..+...|+ +|..+|....... +.+ . .. .. .+. +.+++||+|+++.+..
T Consensus 1 KI~IiGaG~vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~- 78 (308)
T 2d4a_B 1 MITILGAGKVGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIG- 78 (308)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCC-
T ss_pred CEEEECcCHHHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCC-
Confidence 58999999999999999875566 7999998753211 111 1 22 22 354 6799999999998743
Q ss_pred ccccccc-----------H---HHHhcCCCCcEEEEcCCCchhc
Q 006212 296 TTSKIFN-----------D---ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 296 ~T~~li~-----------~---~~l~~mK~gailINvaRg~ivd 325 (656)
...++-. . +.+....|++++++++ ..+|
T Consensus 79 ~k~G~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~ 120 (308)
T 2d4a_B 79 RKPGMTREQLLEANANTMADLAEKIKAYAKDAIVVITT--NPVD 120 (308)
T ss_dssp CCSSCCTHHHHHHHHHHHHHHHHHHHHHCTTCEEEECC--SSHH
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHCCCeEEEEeC--CchH
Confidence 3223211 1 1122235888999974 3444
|
| >3aoe_E Glutamate dehydrogenase; rossmann fold, NADH, oxidoreductase; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.00 E-value=0.48 Score=51.49 Aligned_cols=95 Identities=26% Similarity=0.426 Sum_probs=63.4
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHH----HHcC-Ce--ecCHHHHh-ccCCE
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKA----RAVG-VE--LVSFDQAL-ATADF 286 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a----~~~g-~~--~~~l~ell-~~aDv 286 (656)
|.++.||++.|.|+|++|+.+|+.|...|.+|++ |||.- ..+.. .+.| +. ..+-++++ -.||+
T Consensus 213 g~~l~gk~vaVqG~GnVG~~~a~~L~~~GakVVavsD~~G~i~dp~Gld~~~l~~~~~~~g~v~~~~~~~~e~~~~~~DV 292 (419)
T 3aoe_E 213 GLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPEGLDVAEVLSAYEATGSLPRLDLAPEEVFGLEAEV 292 (419)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEEECTTCCCHHHHHHHHHHHSSCSCCCBCTTTGGGSSCSE
T ss_pred CCCccCCEEEEECcCHHHHHHHHHHHHCCCEEEEEEcCCCeEECCCCCCHHHHHHHHHhhCCcceeeccchhhhccCceE
Confidence 5679999999999999999999999999999994 34432 22221 1122 11 12223433 37898
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv 324 (656)
++-|.. .+.++.+....++- .+|+..|-+.+-
T Consensus 293 liP~A~-----~n~i~~~~A~~l~a-k~V~EgAN~p~t 324 (419)
T 3aoe_E 293 LVLAAR-----EGALDGDRARQVQA-QAVVEVANFGLN 324 (419)
T ss_dssp EEECSC-----TTCBCHHHHTTCCC-SEEEECSTTCBC
T ss_pred EEeccc-----ccccccchHhhCCc-eEEEECCCCcCC
Confidence 888864 34467776666743 477777777753
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=93.98 E-value=0.053 Score=56.57 Aligned_cols=93 Identities=18% Similarity=0.143 Sum_probs=59.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHc--------CCee-cCHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAV--------GVEL-VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~--------g~~~-~~l~ell~~aDvV~l~~Plt~~ 296 (656)
++|+|||.|.+|.+++..+...+ -++..+|...... .+.++ .+.. .+-.+.+++||+|+++.+.. .
T Consensus 1 ~KI~IiGaG~vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~-~ 79 (310)
T 2xxj_A 1 MKVGIVGSGMVGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVA-Q 79 (310)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCC-C
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCC-C
Confidence 47999999999999999988655 5899999864211 12111 1111 13366799999999998743 2
Q ss_pred ccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 297 TSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 297 T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
..++- |. +.+....|++++++++ ..+|
T Consensus 80 ~~g~~r~dl~~~n~~i~~~i~~~i~~~~p~a~iiv~t--NPv~ 120 (310)
T 2xxj_A 80 RPGETRLQLLDRNAQVFAQVVPRVLEAAPEAVLLVAT--NPVD 120 (310)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS--SSHH
T ss_pred CCCcCHHHHHHhhHHHHHHHHHHHHHHCCCcEEEEec--CchH
Confidence 22221 11 1122236889999984 4454
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=93.93 E-value=0.095 Score=53.54 Aligned_cols=38 Identities=29% Similarity=0.307 Sum_probs=34.3
Q ss_pred cccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.++.||++.|+| .|-||+.+++.|...|.+|+++++..
T Consensus 115 ~~l~gk~vlVtGaaGGiG~aia~~L~~~G~~V~i~~R~~ 153 (287)
T 1lu9_A 115 GSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 153 (287)
T ss_dssp SCCTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEECCH
Confidence 457899999999 99999999999999999999998864
|
| >3e5r_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosolic; GAPDH, RICE, oxidoreductase, cytoplasm, glycolysis, NAD; HET: NAD; 2.30A {Oryza sativa subsp} PDB: 3e6a_O | Back alignment and structure |
|---|
Probab=93.84 E-value=0.077 Score=56.12 Aligned_cols=85 Identities=24% Similarity=0.414 Sum_probs=52.6
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEE-CCCCChhHH-HH------cC---------------------Ceec---CH
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADKA-RA------VG---------------------VELV---SF 277 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~~~a-~~------~g---------------------~~~~---~l 277 (656)
+|||+|+|+||+.+++.+... +++|.+. |+....+.+ .- .| +... ++
T Consensus 5 kVgI~G~GrIGr~l~R~l~~~p~vevvaI~d~~~~~~~~~~ll~yds~~g~~~~~~v~~~~~~~l~~~g~~i~v~~~~dp 84 (337)
T 3e5r_O 5 KIGINGFGRIGRLVARVALQSEDVELVAVNDPFITTDYMTYMFKYDTVHGQWKHSDIKIKDSKTLLLGEKPVTVFGIRNP 84 (337)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEECSSSCHHHHHHHHHCCTTTCCCCSSCEEESSSSEEEETTEEEEEECCSCG
T ss_pred EEEEECcCHHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHhhcccccCCCCCCCcEEeecCCeeEECCeEEEEEecCCh
Confidence 799999999999999998866 6887775 542222111 10 01 0111 45
Q ss_pred HHH-h--ccCCEEEEccCCCccccccccHHHHhcCCCCc--EEEEcCC
Q 006212 278 DQA-L--ATADFISLHMPLNPTTSKIFNDETFAKMKKGV--RIVNVAR 320 (656)
Q Consensus 278 ~el-l--~~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga--ilINvaR 320 (656)
+++ + ..+|+|+.|+|... +. +..-..++.|+ +||+...
T Consensus 85 ~~l~w~~~~vDvV~eaTg~~~-~~----e~a~~~l~aGak~VVIs~pa 127 (337)
T 3e5r_O 85 DEIPWAEAGAEYVVESTGVFT-DK----EKAAAHLKGGAKKVVISAPS 127 (337)
T ss_dssp GGCCHHHHTCSEEEECSSSCC-SH----HHHTHHHHTTCSEEEESSCC
T ss_pred HHccccccCCCEEEECCCchh-hH----HHHHHHHHcCCCEEEEecCC
Confidence 554 2 57999999999442 22 12222356677 8888763
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=93.83 E-value=0.12 Score=55.08 Aligned_cols=85 Identities=15% Similarity=0.189 Sum_probs=56.9
Q ss_pred CCEEEEEe-cChhHHHHHHHHhcCC-CEEEEEC-CC-CChhHH-------HHcCCeecCHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMG-FGKVGSEVARRAKGLG-MNVIAHD-PY-APADKA-------RAVGVELVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIG-lG~IG~~vA~~lk~~G-~~Vi~~d-~~-~~~~~a-------~~~g~~~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
-.+||||| .|.+|+.+.+.|..+. .++.... +. ...... .+.-++..+.++++.++|++++|+|..
T Consensus 13 ~~~V~IvGAtG~vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~~~l~~~~~~~~~~~~~~Dvvf~alp~~--- 89 (351)
T 1vkn_A 13 MIRAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAG--- 89 (351)
T ss_dssp CEEEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTT---
T ss_pred eeEEEEECCCCHHHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhccCceEEeCCHHHhhcCCCEEEECCCcH---
Confidence 35799996 7999999999999774 5666543 22 111111 111122235667678999999999944
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
...+....+ .|+.+||.+.
T Consensus 90 ---~s~~~~~~~-~g~~VIDlSs 108 (351)
T 1vkn_A 90 ---ASYDLVREL-KGVKIIDLGA 108 (351)
T ss_dssp ---HHHHHHTTC-CSCEEEESSS
T ss_pred ---HHHHHHHHh-CCCEEEECCh
Confidence 345555566 8999999984
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.74 E-value=0.054 Score=57.01 Aligned_cols=86 Identities=16% Similarity=0.273 Sum_probs=56.8
Q ss_pred CCCEEEEE-ecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------CHHHHhc-----cCCEEEEccCCC
Q 006212 228 VGKTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQALA-----TADFISLHMPLN 294 (656)
Q Consensus 228 ~gktvGII-GlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell~-----~aDvV~l~~Plt 294 (656)
.|++|.|+ |.|.||..+++.++..|.+|++.+++. ..+.++++|...+ ++.+.+. ..|+|+-|+...
T Consensus 167 ~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~~~~~~~~~~~~~~~~~~~g~Dvvid~~g~~ 246 (353)
T 4dup_A 167 EGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACERLGAKRGINYRSEDFAAVIKAETGQGVDIILDMIGAA 246 (353)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHHSSCEEEEEESCCGG
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEeCCchHHHHHHHHHhCCCceEEEECCCHH
Confidence 58899999 689999999999999999999998765 3455666665321 2222221 366666665521
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
.-...+..|+++..++.++
T Consensus 247 ------~~~~~~~~l~~~G~iv~~g 265 (353)
T 4dup_A 247 ------YFERNIASLAKDGCLSIIA 265 (353)
T ss_dssp ------GHHHHHHTEEEEEEEEECC
T ss_pred ------HHHHHHHHhccCCEEEEEE
Confidence 1233455566666666665
|
| >2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A | Back alignment and structure |
|---|
Probab=93.71 E-value=0.18 Score=54.23 Aligned_cols=139 Identities=19% Similarity=0.169 Sum_probs=87.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
--++-|+|.|.+|+.+|+.++.+|++|.++|++.... + .+-+..+|-++...| .+.+..
T Consensus 204 ~~rL~IfGAGhva~ala~~a~~lg~~V~v~D~R~~~~----------~-~~~fp~a~~~~~~~p----------~~~~~~ 262 (386)
T 2we8_A 204 RPRMLVFGAIDFAAAVAQQGAFLGYRVTVCDARPVFA----------T-TARFPTADEVVVDWP----------HRYLAA 262 (386)
T ss_dssp CCEEEEECCSTHHHHHHHHHHHTTCEEEEEESCTTTS----------C-TTTCSSSSEEEESCH----------HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhc----------c-cccCCCceEEEeCCh----------HHHHHh
Confidence 3589999999999999999999999999999875211 0 122356665555544 112222
Q ss_pred ------CCCCcEEEEcCCCchhcHHHHHHhHhcC---CeEEEEeec-----------cCCCCCCCCCccccCCcEEEcCC
Q 006212 309 ------MKKGVRIVNVARGGVIDEEALVRALDSG---VVAQAALDV-----------FTEEPPAKDSKLVQHENVTVTPH 368 (656)
Q Consensus 309 ------mK~gailINvaRg~ivde~aL~~aL~~g---~i~gA~lDV-----------~~~EP~~~~~~L~~~~nvilTPH 368 (656)
+.+++.++=+.++.-.|...|..+|+.+ +|+-.|+-. .+..+ ..-.+|. .|-= - .
T Consensus 263 ~~~~~~~~~~t~vvvlTh~~~~D~~~L~~aL~~~~~~YIG~iGSrrk~~~~~~rL~~~G~~~-~~l~Rl~-~PIG--L-d 337 (386)
T 2we8_A 263 QAEAGAIDARTVVCVLTHDPKFDVPLLEVALRLPDIAYIGAMGSRRTHEDRLARLREAGLTE-EELARLS-SPIG--L-D 337 (386)
T ss_dssp HHHHTCCCTTCEEEECCCCHHHHHHHHHHHTTSSCCSEEEECCCHHHHHHHHHHHHHTTCCH-HHHTTCB-CSCS--C-C
T ss_pred hccccCCCCCcEEEEEECChHhHHHHHHHHhcCCCCCEEEEecChhHHHHHHHHHHhCCCCh-HHhccEE-cCCC--C-C
Confidence 6788888888899888999999999886 333233220 01100 0001121 1111 1 3
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHHHcCCC
Q 006212 369 LGASTKEAQEGVAIEIAEAVVGALRGEL 396 (656)
Q Consensus 369 ~g~~T~ea~~~~~~~~~~~i~~~l~g~~ 396 (656)
+|+.|++ +++..++.+|+...++..
T Consensus 338 IGa~tPe---EIAvSI~AEiia~~~~~~ 362 (386)
T 2we8_A 338 LGGRTPE---ETAVSIAAEIIAKRWGGE 362 (386)
T ss_dssp CCCCSHH---HHHHHHHHHHHHHHTC--
T ss_pred CCCCCHH---HHHHHHHHHHHHHHhcCC
Confidence 7788874 567788888888887653
|
| >2yyy_A Glyceraldehyde-3-phosphate dehydrogenase; glyceraldehyde 3-phosphate binding, alpha and beta proteins (A/B) class, MJ1146; HET: NAP; 1.85A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=93.71 E-value=0.11 Score=54.90 Aligned_cols=83 Identities=17% Similarity=0.226 Sum_probs=50.1
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEE-CCCCCh--hHHHHc--------------------CCeec-CHHHHhccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPA--DKARAV--------------------GVELV-SFDQALATAD 285 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~--~~a~~~--------------------g~~~~-~l~ell~~aD 285 (656)
+|||+|+|+||+.+++.+... +++|.+. |..... ..++.. ++... +.++++..+|
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~evvaV~d~~~~~~~~l~~~dg~s~~g~~~~~~~v~~~~~~~l~v~~~~~~~~~~vD 83 (343)
T 2yyy_A 4 KVLINGYGSIGKRVADAVSMQDDMEVIGVTKTKPDFEARLAVEKGYKLFVAIPDNERVKLFEDAGIPVEGTILDIIEDAD 83 (343)
T ss_dssp EEEEECCSHHHHHHHHHHHHSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSCCHHHHHHHHHTTCCCCCBGGGTGGGCS
T ss_pred EEEEECCCHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhcCCccccccCCCceeecccCCeEEECCchHHhccCCC
Confidence 799999999999999998765 6887765 322111 011111 11111 3445567899
Q ss_pred EEEEccCCCccccccccHHHH--hcCCCCcEEEEcC
Q 006212 286 FISLHMPLNPTTSKIFNDETF--AKMKKGVRIVNVA 319 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l--~~mK~gailINva 319 (656)
+|+.|+|... ..+.. ..++.|+.+|..+
T Consensus 84 iV~eatg~~~------s~~~a~~~~l~aG~~VI~sa 113 (343)
T 2yyy_A 84 IVVDGAPKKI------GKQNLENIYKPHKVKAILQG 113 (343)
T ss_dssp EEEECCCTTH------HHHHHHHTTTTTTCEEEECT
T ss_pred EEEECCCccc------cHHHHHHHHHHCCCEEEECC
Confidence 9999988432 11222 3467777777643
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.033 Score=57.76 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=66.3
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-c-----C-HHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-V-----S-FDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~-----~-l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.|++|.|+| .|.+|...++.++.+|.+|++.+.....+.++++|+.. + + +.+.+...|+|+-|+...
T Consensus 152 ~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~g~~----- 226 (321)
T 3tqh_A 152 QGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTASKRNHAFLKALGAEQCINYHEEDFLLAISTPVDAVIDLVGGD----- 226 (321)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEECHHHHHHHHHHTCSEEEETTTSCHHHHCCSCEEEEEESSCHH-----
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEeccchHHHHHHcCCCEEEeCCCcchhhhhccCCCEEEECCCcH-----
Confidence 488999997 99999999999999999999886443456677788742 1 3 556667789998887622
Q ss_pred cccHHHHhcCCCCcEEEEcCC
Q 006212 300 IFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaR 320 (656)
.. ...+..++++..++.++.
T Consensus 227 ~~-~~~~~~l~~~G~iv~~g~ 246 (321)
T 3tqh_A 227 VG-IQSIDCLKETGCIVSVPT 246 (321)
T ss_dssp HH-HHHGGGEEEEEEEEECCS
T ss_pred HH-HHHHHhccCCCEEEEeCC
Confidence 12 556777899999998864
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.058 Score=57.21 Aligned_cols=66 Identities=27% Similarity=0.430 Sum_probs=47.9
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCC--EEEEECCCCChhH--H---HHc-----CCee-cCHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGM--NVIAHDPYAPADK--A---RAV-----GVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a---~~~-----g~~~-~~l~ell~~aDvV~l~~P 292 (656)
+.+++|+|||. |.+|..+|..+..+|. +|..+|....... + .+. .+.. .++.+.+++||+|+++.-
T Consensus 6 ~~~~KV~ViGaaG~VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG 85 (343)
T 3fi9_A 6 LTEEKLTIVGAAGMIGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGG 85 (343)
T ss_dssp SCSSEEEEETTTSHHHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC
T ss_pred cCCCEEEEECCCChHHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccC
Confidence 35789999998 9999999998887774 8999998642111 1 111 1222 368888999999999864
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.096 Score=57.43 Aligned_cols=64 Identities=22% Similarity=0.336 Sum_probs=46.5
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCCh-hH-HHHc-C----------------------Ce-ecCHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPA-DK-ARAV-G----------------------VE-LVSFDQAL 281 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~-~~-a~~~-g----------------------~~-~~~l~ell 281 (656)
-+|||||+|.||+.+++.+... +++|.+ +|++... +. +.+. | +. +.++++++
T Consensus 24 IRVGIIGaG~iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL 103 (446)
T 3upl_A 24 IRIGLIGAGEMGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLIL 103 (446)
T ss_dssp EEEEEECCSHHHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHH
T ss_pred eEEEEECChHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHh
Confidence 3799999999999999988755 788765 6776522 22 2222 4 22 34899999
Q ss_pred c--cCCEEEEccCC
Q 006212 282 A--TADFISLHMPL 293 (656)
Q Consensus 282 ~--~aDvV~l~~Pl 293 (656)
. +.|+|+.++|.
T Consensus 104 ~d~dIDaVviaTp~ 117 (446)
T 3upl_A 104 SNPLIDVIIDATGI 117 (446)
T ss_dssp TCTTCCEEEECSCC
T ss_pred cCCCCCEEEEcCCC
Confidence 7 58999999984
|
| >3r3j_A Glutamate dehydrogenase; rossman fold, oxidoreductase, apicoplast; 3.10A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.68 E-value=0.19 Score=54.98 Aligned_cols=36 Identities=25% Similarity=0.261 Sum_probs=32.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEE-EEC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVI-AHD 259 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi-~~d 259 (656)
|.++.|+||.|-|+|++|+..|+.|...|.+|+ +.|
T Consensus 234 g~~l~g~~VaVQG~GnVG~~aa~~L~e~GakvVavsD 270 (456)
T 3r3j_A 234 NDNLENKKCLVSGSGNVAQYLVEKLIEKGAIVLTMSD 270 (456)
T ss_dssp TCCSTTCCEEEECCSHHHHHHHHHHHHHTCCBCCEEC
T ss_pred CCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEC
Confidence 567999999999999999999999999999987 344
|
| >3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D* | Back alignment and structure |
|---|
Probab=93.66 E-value=0.074 Score=56.29 Aligned_cols=36 Identities=33% Similarity=0.683 Sum_probs=31.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCCChh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYAPAD 265 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~~~~ 265 (656)
.+|||.|||+||+.+++++..+|++|++ +||+.+.+
T Consensus 8 ~kvgInGFGRIGrlv~R~~~~~~veivainDp~~d~~ 44 (346)
T 3h9e_O 8 LTVGINGFGRIGRLVLRACMEKGVKVVAVNDPFIDPE 44 (346)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEECTTCCHH
T ss_pred eEEEEECCChHHHHHHHHHHhCCCEEEEEeCCCCChh
Confidence 4899999999999999999988999988 68865443
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=93.62 E-value=0.038 Score=53.52 Aligned_cols=63 Identities=11% Similarity=0.148 Sum_probs=44.4
Q ss_pred CEEEEEe-cChhHHHHHHHHh-cCCCEEEEECCCCC-hhH-H--HHcCCee-----c---CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAK-GLGMNVIAHDPYAP-ADK-A--RAVGVEL-----V---SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk-~~G~~Vi~~d~~~~-~~~-a--~~~g~~~-----~---~l~ell~~aDvV~l~~P 292 (656)
|++.|.| .|.||+.+++.|. ..|++|++.++... ... . ...++.. . +++++++.+|+|+.++.
T Consensus 6 k~vlVtGasg~iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vv~~ag 82 (221)
T 3r6d_A 6 XYITILGAAGQIAQXLTATLLTYTDMHITLYGRQLKTRIPPEIIDHERVTVIEGSFQNPGXLEQAVTNAEVVFVGAM 82 (221)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHHCCCEEEEEESSHHHHSCHHHHTSTTEEEEECCTTCHHHHHHHHTTCSEEEESCC
T ss_pred EEEEEEeCCcHHHHHHHHHHHhcCCceEEEEecCccccchhhccCCCceEEEECCCCCHHHHHHHHcCCCEEEEcCC
Confidence 6799999 6999999999999 89999999987632 111 1 1112221 1 24567788888887776
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=93.58 E-value=0.16 Score=53.94 Aligned_cols=100 Identities=15% Similarity=0.173 Sum_probs=61.2
Q ss_pred CEEEEEe-cChhHHH-HH----HHHhcCC-CEE----------EEECCCCC--hhHHHHcCCe--ecCHHHHhcc--CCE
Q 006212 230 KTLAVMG-FGKVGSE-VA----RRAKGLG-MNV----------IAHDPYAP--ADKARAVGVE--LVSFDQALAT--ADF 286 (656)
Q Consensus 230 ktvGIIG-lG~IG~~-vA----~~lk~~G-~~V----------i~~d~~~~--~~~a~~~g~~--~~~l~ell~~--aDv 286 (656)
.+||||| +|.||.. .+ +.++..+ ..+ .++|++.. ...+.+.|+. +.++++++++ .|+
T Consensus 7 irigiiG~~G~~g~~~h~~~~~~~~~~~~~~~l~~~~~~~~~~av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~ 86 (383)
T 3oqb_A 7 LGLIMNGVTGRMGLNQHLIRSIVAIRDQGGVRLKNGDRIMPDPILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTM 86 (383)
T ss_dssp EEEEEESTTSTHHHHTTTTTTHHHHHHHTSEECTTSCEEEEEEEEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCE
T ss_pred eEEEEEeccchhhhhhhHHHHHHHHhhcCceeecCCcccceeeEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCE
Confidence 3799999 9999998 66 6666433 332 37888763 3345567874 4589999975 899
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCC---CchhcHHHHHHhHhc
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR---GGVIDEEALVRALDS 335 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaR---g~ivde~aL~~aL~~ 335 (656)
|++|+|.. +.. +-....|+.|.-++ |-. -.+-+.++|.++.++
T Consensus 87 V~i~tp~~--~h~---~~~~~al~~Gk~V~-~EKP~a~~~~~~~~l~~~a~~ 132 (383)
T 3oqb_A 87 FFDAATTQ--ARP---GLLTQAINAGKHVY-CEKPIATNFEEALEVVKLANS 132 (383)
T ss_dssp EEECSCSS--SSH---HHHHHHHTTTCEEE-ECSCSCSSHHHHHHHHHHHHH
T ss_pred EEECCCch--HHH---HHHHHHHHCCCeEE-EcCCCCCCHHHHHHHHHHHHH
Confidence 99999942 221 22233355554444 332 122234555555444
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.061 Score=56.20 Aligned_cols=46 Identities=20% Similarity=0.242 Sum_probs=38.9
Q ss_pred CCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|++|.|+|.| .||...++.++.+|.+|++.+++. ..+.++++|..
T Consensus 144 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lga~ 191 (340)
T 3gms_A 144 RNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELLRLGAA 191 (340)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCS
T ss_pred CCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhCCCc
Confidence 58899999998 999999999999999999998765 45666677653
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.54 E-value=0.17 Score=53.53 Aligned_cols=90 Identities=24% Similarity=0.288 Sum_probs=64.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec------CHHHHh---ccCCEEEEccCCCccc
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV------SFDQAL---ATADFISLHMPLNPTT 297 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~------~l~ell---~~aDvV~l~~Plt~~T 297 (656)
.|++|.|+| .|.||...++.++.+|.+|++.+.....+.++++|...+ ++.+.+ ...|+|+-++.....+
T Consensus 183 ~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~ 262 (375)
T 2vn8_A 183 TGKRVLILGASGGVGTFAIQVMKAWDAHVTAVCSQDASELVRKLGADDVIDYKSGSVEEQLKSLKPFDFILDNVGGSTET 262 (375)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSSCHHHHHHTSCCBSEEEESSCTTHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEeChHHHHHHHHcCCCEEEECCchHHHHHHhhcCCCCEEEECCCChhhh
Confidence 589999999 799999999999999999998874334566777886431 233322 3589999888733111
Q ss_pred cccccHHHHhcCCCCcEEEEcCCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg 321 (656)
-...+..++++..++.++..
T Consensus 263 ----~~~~~~~l~~~G~iv~~g~~ 282 (375)
T 2vn8_A 263 ----WAPDFLKKWSGATYVTLVTP 282 (375)
T ss_dssp ----HGGGGBCSSSCCEEEESCCS
T ss_pred ----hHHHHHhhcCCcEEEEeCCC
Confidence 13345668999999999854
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=93.47 E-value=0.062 Score=56.31 Aligned_cols=45 Identities=33% Similarity=0.513 Sum_probs=37.7
Q ss_pred CCCEEEEE-ecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGII-GlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+ |.|.||...++.++.+|.+|++.++.. ..+.++++|.
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa 196 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTKKMGA 196 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCC
Confidence 68999999 799999999999999999999999864 3445555554
|
| >4hv4_A UDP-N-acetylmuramate--L-alanine ligase; MURC, yersinia pestis peptidoglycan synthesis; HET: AMP; 2.25A {Yersinia pestis} PDB: 2f00_A | Back alignment and structure |
|---|
Probab=93.46 E-value=0.081 Score=58.66 Aligned_cols=107 Identities=15% Similarity=0.237 Sum_probs=67.4
Q ss_pred CCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec--CHHHHhccCCEEEEc--cCCC-ccc---
Q 006212 229 GKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV--SFDQALATADFISLH--MPLN-PTT--- 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~--~l~ell~~aDvV~l~--~Plt-~~T--- 297 (656)
.|+|.|||+|.+|.+ +|+.|+..|++|.++|..... +..++.|+.+. .-.+.+..+|+|++. +|.+ |+.
T Consensus 22 ~~~v~viGiG~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~Spgi~~~~p~~~~a 101 (494)
T 4hv4_A 22 VRHIHFVGIGGAGMGGIAEVLANEGYQISGSDLAPNSVTQHLTALGAQIYFHHRPENVLDASVVVVSTAISADNPEIVAA 101 (494)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCEEESSCCGGGGTTCSEEEECTTSCTTCHHHHHH
T ss_pred CCEEEEEEEcHhhHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHCCCEEECCCCHHHcCCCCEEEECCCCCCCCHHHHHH
Confidence 589999999999996 899999999999999976532 34556788654 122346789999875 3321 111
Q ss_pred ----cccccH-HHHhc-CCCCc-EEEEcCCCchhcHHHHHHhHhc
Q 006212 298 ----SKIFND-ETFAK-MKKGV-RIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 298 ----~~li~~-~~l~~-mK~ga-ilINvaRg~ivde~aL~~aL~~ 335 (656)
..++++ +.+.. |+... +-|--+.|+--...-+...|+.
T Consensus 102 ~~~gi~v~~~~e~l~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~ 146 (494)
T 4hv4_A 102 REARIPVIRRAEMLAELMRYRHGIAVAGTHGKTTTTAMLSSIYAE 146 (494)
T ss_dssp HHTTCCEEEHHHHHHHHHTTSEEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHCCCCEEcHHHHHHHHhcCCCEEEEecCCChHHHHHHHHHHHHh
Confidence 112333 23333 34332 3333346877666656666664
|
| >4gsl_A Ubiquitin-like modifier-activating enzyme ATG7; ubiquitin-like protein activation enzyme, ubiquitin-like Pro transfer enzyme, protein transport; 2.70A {Saccharomyces cerevisiae} PDB: 3vh2_A 4gsk_A 3vh1_A | Back alignment and structure |
|---|
Probab=93.45 E-value=0.11 Score=58.87 Aligned_cols=74 Identities=16% Similarity=0.258 Sum_probs=51.2
Q ss_pred cCceeecCCCC-ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccc-cccCCCEEEEEecChhHHHHHHHHhcCC
Q 006212 175 FGCLVVNAPIA-NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVG-VSLVGKTLAVMGFGKVGSEVARRAKGLG 252 (656)
Q Consensus 175 ~GI~V~n~p~~-n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g-~~l~gktvGIIGlG~IG~~vA~~lk~~G 252 (656)
.+-..++-... +....||.+.-+-|-+.| |.-....| ..|++++|.|||+|.+|..+|+.|...|
T Consensus 283 l~~~~~~l~~~~dp~~la~~~~~Lnlklm~-------------wRllp~~g~ekL~~arVLIVGaGGLGs~vA~~La~aG 349 (615)
T 4gsl_A 283 LAPRVVDLSSLLDPLKIADQSVDLNLKLMK-------------WRILPDLNLDIIKNTKVLLLGAGTLGCYVSRALIAWG 349 (615)
T ss_dssp SCCEEEECHHHHCHHHHHHHHHHHHHHHHH-------------HHTCTTCCHHHHHTCEEEEECCSHHHHHHHHHHHHTT
T ss_pred cceeEEeccccCCHHHHHhhhhhhhhHHHH-------------HhhcchhhHHHHhCCeEEEECCCHHHHHHHHHHHHcC
Confidence 33455555332 566777777666555554 43222223 3689999999999999999999999888
Q ss_pred C-EEEEECCC
Q 006212 253 M-NVIAHDPY 261 (656)
Q Consensus 253 ~-~Vi~~d~~ 261 (656)
. ++..+|..
T Consensus 350 VG~ItLvD~D 359 (615)
T 4gsl_A 350 VRKITFVDNG 359 (615)
T ss_dssp CCEEEEECCC
T ss_pred CCEEEEEcCC
Confidence 6 77788764
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.071 Score=55.72 Aligned_cols=62 Identities=8% Similarity=0.066 Sum_probs=45.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEE-ECCCC--ChhHHH----HcCC--e-ecCHHHHhcc--CCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIA-HDPYA--PADKAR----AVGV--E-LVSFDQALAT--ADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~-~d~~~--~~~~a~----~~g~--~-~~~l~ell~~--aDvV~l~~P 292 (656)
.++||||+|.+|+..++.+ .-+++|.+ +|+.. ..+.+. +.|+ . +.++++++.+ .|+|++|+|
T Consensus 3 ~rvgiiG~G~~~~~~~~~l-~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp 76 (337)
T 3ip3_A 3 LKICVIGSSGHFRYALEGL-DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTV 76 (337)
T ss_dssp EEEEEECSSSCHHHHHTTC-CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSS
T ss_pred eEEEEEccchhHHHHHHhc-CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCC
Confidence 4799999999999777776 55788876 78764 222222 2354 3 3489999975 899999998
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.064 Score=55.82 Aligned_cols=45 Identities=22% Similarity=0.226 Sum_probs=38.0
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+| .|.||...++.++..|.+|++.+++. ..+.+++.|.
T Consensus 148 ~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 194 (334)
T 3qwb_A 148 KGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAKEYGA 194 (334)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 589999999 89999999999999999999998864 3455666665
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.39 E-value=0.096 Score=55.71 Aligned_cols=46 Identities=30% Similarity=0.384 Sum_probs=38.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|++|.|+|.|.+|...++.++.+| .+|++.++.. ..+.++++|+.
T Consensus 195 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 242 (380)
T 1vj0_A 195 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 242 (380)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHHHcCCc
Confidence 4889999999999999999999999 6999999765 34556667753
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.38 E-value=0.064 Score=55.33 Aligned_cols=86 Identities=15% Similarity=0.119 Sum_probs=55.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--CHHHHhccCCEEEEccCCCccccccccHHH
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--SFDQALATADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--~l~ell~~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
.|++|.|+|.|.+|...++.++.+|.+|++.+.....+.++++|+..+ +.+++-...|+|+-|+... .+ ...
T Consensus 142 ~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~~~~~~~~~~~lGa~~v~~d~~~v~~g~Dvv~d~~g~~-~~-----~~~ 215 (315)
T 3goh_A 142 KQREVLIVGFGAVNNLLTQMLNNAGYVVDLVSASLSQALAAKRGVRHLYREPSQVTQKYFAIFDAVNSQ-NA-----AAL 215 (315)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHHTCEEEEECSSCCHHHHHHHTEEEEESSGGGCCSCEEEEECC-------------TT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEChhhHHHHHHcCCCEEEcCHHHhCCCccEEEECCCch-hH-----HHH
Confidence 589999999999999999999999999999993236677788887432 2111123456666655421 11 223
Q ss_pred HhcCCCCcEEEEcC
Q 006212 306 FAKMKKGVRIVNVA 319 (656)
Q Consensus 306 l~~mK~gailINva 319 (656)
+..++++..++.++
T Consensus 216 ~~~l~~~G~~v~~g 229 (315)
T 3goh_A 216 VPSLKANGHIICIQ 229 (315)
T ss_dssp GGGEEEEEEEEEEC
T ss_pred HHHhcCCCEEEEEe
Confidence 45566666666653
|
| >2ejw_A HDH, homoserine dehydrogenase; NAD-dependent, oxidoreductase; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.033 Score=58.82 Aligned_cols=101 Identities=15% Similarity=0.106 Sum_probs=57.5
Q ss_pred EEEEEecChhHHHHHHHHhcC---------CCEEEE-ECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccc
Q 006212 231 TLAVMGFGKVGSEVARRAKGL---------GMNVIA-HDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~---------G~~Vi~-~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
+|||||+|.||+.+++.++.. +++|.+ +|++..............++++++ +.|+|+.|+|... ...-
T Consensus 5 rvgIiG~G~VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~~~~~~~~~d~~~ll-~iDvVve~t~~~~-~a~~ 82 (332)
T 2ejw_A 5 KIALLGGGTVGSAFYNLVLERAEELSAFGVVPRFLGVLVRDPRKPRAIPQELLRAEPFDLL-EADLVVEAMGGVE-APLR 82 (332)
T ss_dssp EEEEECCSHHHHHHHHHHHHTGGGGGGGTEEEEEEEEECSCTTSCCSSCGGGEESSCCCCT-TCSEEEECCCCSH-HHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhChhhHhhcCCCEEEEEEEECCHHHhhccCcccccCCHHHHh-CCCEEEECCCCcH-HHHH
Confidence 699999999999999988754 467655 576532111001111234788888 9999999998432 1111
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhcC
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDSG 336 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~g 336 (656)
+ ..+.|+.|.-++-.....+. ..+.|.++-++.
T Consensus 83 ~---~~~AL~aGKhVVtaNkkpla~~~~eL~~~A~~~ 116 (332)
T 2ejw_A 83 L---VLPALEAGIPLITANKALLAEAWESLRPFAEEG 116 (332)
T ss_dssp H---HHHHHHTTCCEEECCHHHHHHSHHHHHHHHHTT
T ss_pred H---HHHHHHcCCeEEECCchhHHHHHHHHHHHHHhC
Confidence 1 12234445444443222222 345666555554
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.32 E-value=0.095 Score=55.94 Aligned_cols=46 Identities=39% Similarity=0.435 Sum_probs=39.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|+.
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 232 (398)
T 1kol_A 185 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFE 232 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCE
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHHcCCc
Confidence 48899999999999999999999999 799998765 44667777764
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=93.30 E-value=0.051 Score=57.48 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=37.7
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+| .|.||..+++.++.+|.+|++.++.. ..+.+++.|.
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga 209 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFLKSLGC 209 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCC
Confidence 488999999 79999999999999999999998764 3445566665
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=93.29 E-value=0.062 Score=55.14 Aligned_cols=63 Identities=17% Similarity=0.284 Sum_probs=43.4
Q ss_pred CEEEEEe-cChhHHHHHHHHhc-CCCEEEE-ECCCCChhHHH--------HcCCee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYAPADKAR--------AVGVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~-~G~~Vi~-~d~~~~~~~a~--------~~g~~~-~~l~ell~~aDvV~l~~P 292 (656)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+..... ..|+.. .++++++.++|+|+-++|
T Consensus 8 ikV~V~Ga~G~MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~ 82 (272)
T 4f3y_A 8 MKIAIAGASGRMGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL 82 (272)
T ss_dssp EEEEESSTTSHHHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC
Confidence 4899999 99999999998874 4888877 68753211100 013333 368888888888877664
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=93.23 E-value=0.068 Score=55.53 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=36.1
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|+++.|.|. |.||..+++.++..|++|++.++.. ..+.+++.|.
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g~ 191 (333)
T 1v3u_A 145 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGF 191 (333)
T ss_dssp SSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 5899999998 9999999999999999999998764 2233444443
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=93.19 E-value=0.053 Score=56.44 Aligned_cols=45 Identities=27% Similarity=0.313 Sum_probs=37.1
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHH-HHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKA-RAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a-~~~g~ 272 (656)
.|++|.|+|. |.||..+++.++..|++|++.+++. ..+.+ +++|.
T Consensus 149 ~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~~g~ 196 (336)
T 4b7c_A 149 NGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFLVEELGF 196 (336)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcCC
Confidence 5899999999 9999999999999999999998764 33444 55565
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.062 Score=55.74 Aligned_cols=45 Identities=31% Similarity=0.417 Sum_probs=37.5
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+| .|.||...++.++..|.+|++.++.. ..+.+++.|.
T Consensus 140 ~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~Ga 186 (325)
T 3jyn_A 140 PGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAKALGA 186 (325)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC
Confidence 589999999 89999999999999999999998764 3445566664
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.056 Score=56.52 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=32.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~ 262 (656)
.|++|.|+|.|.+|...++.++.+|. +|++.++..
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~ 199 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNP 199 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 68999999999999999999999999 999999764
|
| >3vh1_A Ubiquitin-like modifier-activating enzyme ATG7; autophagy, zinc binding, metal binding protein; 3.00A {Saccharomyces cerevisiae} PDB: 3vh2_A | Back alignment and structure |
|---|
Probab=93.01 E-value=0.15 Score=57.81 Aligned_cols=91 Identities=15% Similarity=0.213 Sum_probs=62.0
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-------------------Ch-hH----HHHc--CCee--c
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-------------------PA-DK----ARAV--GVEL--V 275 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-------------------~~-~~----a~~~--g~~~--~ 275 (656)
..|.+++|.|||+|.+|..+|+.|...|. ++..+|... +. +. ..+. +++. .
T Consensus 323 ~kL~~~kVLIVGaGGLGs~va~~La~aGVG~ItLvD~D~Ve~SNL~RQ~L~~~~DvG~~KAeaaa~~L~~iNP~v~v~~~ 402 (598)
T 3vh1_A 323 DIIKNTKVLLLGAGTLGCYVSRALIAWGVRKITFVDNGTVSYSNPVRQALYNFEDCGKPKAELAAASLKRIFPLMDATGV 402 (598)
T ss_dssp HHHHTCEEEEECCSHHHHHHHHHHHTTTCCEEEEECCSBCCTTSTTTSTTCCSTTCSSBHHHHHHHHHHHHCTTCEEEEE
T ss_pred HHHhCCeEEEECCCHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccchhhcCcHHHHHHHHHHHhHCCCcEEEEE
Confidence 57899999999999999999999999887 788887531 00 00 1111 1211 1
Q ss_pred ----------------------CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 276 ----------------------SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 276 ----------------------~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.++++++++|+|+.|+. +.+++.+++...... +..+|+.+
T Consensus 403 ~~~I~~pgh~i~~~~~~~l~~~~l~~li~~~DvVvdatD-n~~tR~lin~~c~~~---~~plI~aa 464 (598)
T 3vh1_A 403 KLSIPMIGHKLVNEEAQHKDFDRLRALIKEHDIIFLLVD-SRESRWLPSLLSNIE---NKTVINAA 464 (598)
T ss_dssp CCCCCCSSCCCCSHHHHHHHHHHHHHHHHHCSEEEECCS-BGGGTHHHHHHHHHT---TCEEEEEE
T ss_pred eccccccCcccccccccccCHHHHHHHHhcCCEEEECCC-CHHHHHHHHHHHHhc---CCCEEEEE
Confidence 13567889999999887 566788887765542 34566643
|
| >2ep5_A 350AA long hypothetical aspartate-semialdehyde dehydrogenase; oxidoreductase, structural genomics, NPPSFA; 2.40A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=92.96 E-value=0.074 Score=56.41 Aligned_cols=84 Identities=17% Similarity=0.288 Sum_probs=50.4
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE-C-CC-CChhHHHH-------------cCCeec--CHHHHhccCCEEEE
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH-D-PY-APADKARA-------------VGVELV--SFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d-~~-~~~~~a~~-------------~g~~~~--~l~ell~~aDvV~l 289 (656)
.+|||+| +|.||+.+.+.|... .+++.+. + +. ........ ..+.+. +.++ +.++|+|++
T Consensus 5 ~kV~IiGAtG~iG~~llr~L~~~p~~elvai~~s~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~-~~~vDvVf~ 83 (350)
T 2ep5_A 5 IKVSLLGSTGMVGQKMVKMLAKHPYLELVKVSASPSKIGKKYKDAVKWIEQGDIPEEVQDLPIVSTNYED-HKDVDVVLS 83 (350)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECCGGGTTSBHHHHCCCCSSSSCCHHHHTCBEECSSGGG-GTTCSEEEE
T ss_pred cEEEEECcCCHHHHHHHHHHHhCCCcEEEEEecChhhcCCCHHHhcCcccccccccCCceeEEeeCCHHH-hcCCCEEEE
Confidence 4799999 999999999999866 4677665 3 21 11111111 111222 3334 478999999
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
|+|... +..+ .-..++.|+.+||.+
T Consensus 84 atp~~~-s~~~----a~~~~~aG~~VId~s 108 (350)
T 2ep5_A 84 ALPNEL-AESI----ELELVKNGKIVVSNA 108 (350)
T ss_dssp CCCHHH-HHHH----HHHHHHTTCEEEECS
T ss_pred CCChHH-HHHH----HHHHHHCCCEEEECC
Confidence 999332 1111 111245677888876
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.14 Score=49.35 Aligned_cols=64 Identities=20% Similarity=0.169 Sum_probs=46.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-----c---CHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-----V---SFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-----~---~l~ell~~aDvV~l~~Pl 293 (656)
++|.|.| .|.||+.+++.|...|++|++.++..........++.+ . ++.++++.+|+|+.+...
T Consensus 5 ~~ilItGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~~ 77 (227)
T 3dhn_A 5 KKIVLIGASGFVGSALLNEALNRGFEVTAVVRHPEKIKIENEHLKVKKADVSSLDEVCEVCKGADAVISAFNP 77 (227)
T ss_dssp CEEEEETCCHHHHHHHHHHHHTTTCEEEEECSCGGGCCCCCTTEEEECCCTTCHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEEcCCchHHHHHHHHHHHCCCEEEEEEcCcccchhccCceEEEEecCCCHHHHHHHhcCCCEEEEeCcC
Confidence 6899999 69999999999999999999999874221111122222 1 356788899999887753
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.11 Score=53.82 Aligned_cols=63 Identities=19% Similarity=0.244 Sum_probs=41.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhc-CCCEEEE-ECCCCCh----hHHH-----HcCCeec-CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKG-LGMNVIA-HDPYAPA----DKAR-----AVGVELV-SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~-~G~~Vi~-~d~~~~~----~~a~-----~~g~~~~-~l~ell~~aDvV~l~~P 292 (656)
.+|+|+| +|+||+.+++.+.. -++++.+ +|+..+. +... ..|+... ++++++.++|+|+-+++
T Consensus 22 irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~ 97 (288)
T 3ijp_A 22 MRLTVVGANGRMGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ 97 (288)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC
Confidence 4799999 99999999999874 4888776 5765321 1111 1234333 67777777777765543
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=92.80 E-value=0.15 Score=55.52 Aligned_cols=85 Identities=15% Similarity=0.179 Sum_probs=59.4
Q ss_pred CCCEEEEEecC----------hhHHHHHHHHhcCCCEEEEECCCCChhHH----HHcC--------Cee-cCHHHHhccC
Q 006212 228 VGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKA----RAVG--------VEL-VSFDQALATA 284 (656)
Q Consensus 228 ~gktvGIIGlG----------~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a----~~~g--------~~~-~~l~ell~~a 284 (656)
.|++|+|+|+. .-...+++.|...|.+|.+|||+.+.... ...+ ..+ .++.+.++.|
T Consensus 312 ~~~~v~vlGlafK~~~~d~r~s~~~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 391 (436)
T 1mv8_A 312 DTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASS 391 (436)
T ss_dssp SCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHC
T ss_pred cCCEEEEEccccCCCCCccccCcHHHHHHHHHHCCCEEEEECCCCChhhccchhhhhcccccccccccccCCHHHHHhCC
Confidence 79999999997 46788999999999999999997421110 1111 122 3688899999
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV 318 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINv 318 (656)
|+|++++.- ++-+.+ + ...|+ +.+|+|+
T Consensus 392 d~~vi~~~~-~~~~~~-~---~~~~~-~~~i~D~ 419 (436)
T 1mv8_A 392 DVLVLGNGD-ELFVDL-V---NKTPS-GKKLVDL 419 (436)
T ss_dssp SEEEECSCC-GGGHHH-H---HSCCT-TCEEEES
T ss_pred cEEEEeCCc-HHHHhh-h---HHhcC-CCEEEEC
Confidence 999999874 322211 1 34455 6788887
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.12 Score=54.28 Aligned_cols=95 Identities=20% Similarity=0.223 Sum_probs=59.6
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChh---HHHH-cCCee--cC-------HHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPAD---KARA-VGVEL--VS-------FDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~---~a~~-~g~~~--~~-------l~ell~~aDvV~l~~Pl 293 (656)
.+++|.|.| .|.||+.+++.|...|++|++.++..... .... .++.. .| +.++++.+|+|+.++..
T Consensus 4 ~~~~ilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 4 QKKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp CCCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred CCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 367899998 59999999999998899999988765322 1111 13321 13 56678999999877653
Q ss_pred CccccccccHHHHhcCCC-C--cEEEEcCCCc
Q 006212 294 NPTTSKIFNDETFAKMKK-G--VRIVNVARGG 322 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~-g--ailINvaRg~ 322 (656)
............+..+++ | ..+|+++...
T Consensus 84 ~~~~~~~~~~~l~~aa~~~g~v~~~V~~SS~~ 115 (352)
T 1xgk_A 84 QAGDEIAIGKDLADAAKRAGTIQHYIYSSMPD 115 (352)
T ss_dssp TTSCHHHHHHHHHHHHHHHSCCSEEEEEECCC
T ss_pred CCcHHHHHHHHHHHHHHHcCCccEEEEeCCcc
Confidence 311112222333433322 3 3788887653
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.1 Score=54.97 Aligned_cols=46 Identities=15% Similarity=0.122 Sum_probs=38.2
Q ss_pred CCCEEEEEecChhHHHH-HHHH-hcCCCE-EEEECCCCC----hhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEV-ARRA-KGLGMN-VIAHDPYAP----ADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~v-A~~l-k~~G~~-Vi~~d~~~~----~~~a~~~g~~ 273 (656)
.+++|.|+|.|.+|... ++.+ +.+|.+ |++.++... .+.++++|+.
T Consensus 172 ~~~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~~~~~~~~~~~lGa~ 224 (357)
T 2b5w_A 172 DPSSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDRPDPTIDIIEELDAT 224 (357)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCSSCHHHHHHHHTTCE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcccHHHHHHHHHcCCc
Confidence 35899999999999999 9999 999997 999988654 4566677753
|
| >1hdg_O Holo-D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehy(D)-NAD(A)); HET: NAD; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=92.72 E-value=0.095 Score=55.30 Aligned_cols=86 Identities=16% Similarity=0.254 Sum_probs=51.6
Q ss_pred CEEEEEecChhHHHHHHHHhcC---CCEEEEECCCCChhHHH-------H-----------------cC--Ceec---CH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL---GMNVIAHDPYAPADKAR-------A-----------------VG--VELV---SF 277 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~---G~~Vi~~d~~~~~~~a~-------~-----------------~g--~~~~---~l 277 (656)
.+|||+|+|+||+.+.+.|... +++|.+.+...+.+... . .| +.+. ++
T Consensus 1 ~kVgI~G~G~iGr~llR~l~~~~~p~~eivain~~~~~~~~~~ll~~ds~~g~~~~~v~~~~~~l~v~g~~i~v~~~~dp 80 (332)
T 1hdg_O 1 ARVAINGFGRIGRLVYRIIYERKNPDIEVVAINDLTDTKTLAHLLKYDSVHKKFPGKVEYTENSLIVDGKEIKVFAEPDP 80 (332)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCTTCEEEEEECSSCHHHHHHHHHCCTTTCCCSSCEEECSSEEEETTEEEEEECCSSG
T ss_pred CEEEEEccCHHHHHHHHHHHhCCCCCeEEEEEEcCCChHHhhhhccCcCcCCCcCCcEEEcCCEEEECCeEEEEEecCCh
Confidence 4799999999999999998754 58988653321111100 0 01 1111 34
Q ss_pred HHH-hc--cCCEEEEccCCCccccccccHHHHhcCCCCc--EEEEcCC
Q 006212 278 DQA-LA--TADFISLHMPLNPTTSKIFNDETFAKMKKGV--RIVNVAR 320 (656)
Q Consensus 278 ~el-l~--~aDvV~l~~Plt~~T~~li~~~~l~~mK~ga--ilINvaR 320 (656)
+++ +. .+|+|+.|+|... +... .-..++.|+ ++|+.+.
T Consensus 81 ~~l~w~~~~vDvV~~atg~~~-s~e~----a~~~l~aGakkvVId~~a 123 (332)
T 1hdg_O 81 SKLPWKDLGVDFVIESTGVFR-NREK----AELHLQAGAKKVIITAPA 123 (332)
T ss_dssp GGSCHHHHTCCEEEECSSSCC-BHHH----HTHHHHTTCSEEEESSCC
T ss_pred HHCcccccCCCEEEECCccch-hHHH----HHHHHHcCCcEEEEeCCC
Confidence 444 33 7999999999543 2211 112246688 9999764
|
| >3hhp_A Malate dehydrogenase; MDH, citric acid cycle, TCA cycle, NAD, oxidoreductase, tricarboxylic acid cycle; 1.45A {Escherichia coli k-12} PDB: 2pwz_A 2cmd_A* 1emd_A* 1ib6_A* 1ie3_A* 4e0b_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=0.23 Score=51.83 Aligned_cols=96 Identities=19% Similarity=0.157 Sum_probs=60.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhc---CCCEEEEECCCCC-hhHHHHc--C-C--eec-----CHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKG---LGMNVIAHDPYAP-ADKARAV--G-V--ELV-----SFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~---~G~~Vi~~d~~~~-~~~a~~~--g-~--~~~-----~l~ell~~aDvV~l~~Plt 294 (656)
.+|+||| .|.+|.++|..|.. +.-++..+|.... ...+.++ . . ... +..+.+++||+|+++.+.
T Consensus 1 mKV~IiGAaG~VG~~~a~~L~~~~~~~~el~L~Di~~~~~G~a~Dl~~~~~~~~v~~~~~~~~~~~~~~aDivii~ag~- 79 (312)
T 3hhp_A 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV- 79 (312)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTEEEEEECSSTTHHHHHHHHHTSCSSEEEEEECSSCCHHHHTTCSEEEECCSC-
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCCceEEEEecCCCchhHHHHhhCCCCCceEEEecCCCcHHHhCCCCEEEEeCCC-
Confidence 4799999 99999999999864 4568999997641 1122111 1 1 121 456789999999999863
Q ss_pred ccccccc-------cHH-------HHhcCCCCcEEEEcCCCchhcHHH
Q 006212 295 PTTSKIF-------NDE-------TFAKMKKGVRIVNVARGGVIDEEA 328 (656)
Q Consensus 295 ~~T~~li-------~~~-------~l~~mK~gailINvaRg~ivde~a 328 (656)
+...++- |.. .+....|++++++++ ..+|.-.
T Consensus 80 ~rkpG~~R~dll~~N~~I~~~i~~~i~~~~p~a~vlvvt--NPvd~~t 125 (312)
T 3hhp_A 80 ARKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVNTTV 125 (312)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEec--CcchhHH
Confidence 3222221 111 122346788999995 5555433
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.43 Score=47.49 Aligned_cols=38 Identities=29% Similarity=0.395 Sum_probs=33.3
Q ss_pred cccCCCEEEEEec-Ch--hHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGF-GK--VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGl-G~--IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.++.||++.|.|. |. ||+.+|+.|...|++|++.++..
T Consensus 3 ~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~ 43 (266)
T 3oig_A 3 FSLEGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGE 43 (266)
T ss_dssp SCCTTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred cccCCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCch
Confidence 4688999999997 45 99999999999999999988764
|
| >3hn7_A UDP-N-acetylmuramate-L-alanine ligase; ATP-binding, nucleotide-binding, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.65A {Psychrobacter arcticus 273-4} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.16 Score=56.68 Aligned_cols=109 Identities=15% Similarity=0.185 Sum_probs=67.7
Q ss_pred cCCCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCC---hhHHHHcCCeec---CHHHHhccCCEEEEc--cCCC-cc
Q 006212 227 LVGKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAP---ADKARAVGVELV---SFDQALATADFISLH--MPLN-PT 296 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~---~~~a~~~g~~~~---~l~ell~~aDvV~l~--~Plt-~~ 296 (656)
..+++|-|||.|.+|.+ +|+.|+..|++|.++|.... .+..++.|+.+. +.+.+..++|+|+.. +|.+ |+
T Consensus 17 ~~~~~i~~iGiGg~Gms~lA~~l~~~G~~V~~sD~~~~~~~~~~L~~~gi~~~~G~~~~~~~~~~d~vV~Spgi~~~~p~ 96 (524)
T 3hn7_A 17 FQGMHIHILGICGTFMGSLALLARALGHTVTGSDANIYPPMSTQLEQAGVTIEEGYLIAHLQPAPDLVVVGNAMKRGMDV 96 (524)
T ss_dssp --CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCCCTTHHHHHHHTTCEEEESCCGGGGCSCCSEEEECTTCCTTSHH
T ss_pred ecCCEEEEEEecHhhHHHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEECCCCHHHcCCCCCEEEECCCcCCCCHH
Confidence 45789999999999997 78889999999999997642 234556788654 345555789999875 3321 21
Q ss_pred c-------cccccHH-HHhc--CCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 297 T-------SKIFNDE-TFAK--MKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 T-------~~li~~~-~l~~--mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
. ..++.+. .+.. +++..+|-=+ +.|+--...-+...|+.
T Consensus 97 l~~a~~~gi~v~~~~e~l~~~~~~~~~vIaVTGTnGKTTTt~li~~iL~~ 146 (524)
T 3hn7_A 97 IEYMLDTGLRYTSGPQFLSEQVLQSRHVIAVAGTHGKTTTTTMLAWILHY 146 (524)
T ss_dssp HHHHHHHTCCEEEHHHHHHHHTGGGSEEEEEECSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEHHHHHHHHHhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 1 1133333 3333 3333333333 46877655555555654
|
| >2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.19 Score=45.80 Aligned_cols=59 Identities=15% Similarity=0.283 Sum_probs=42.4
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
+.+.+..+|+||++++|.++|+++||||..+.+.... +.+++++..++ .+.+.+.|++.
T Consensus 7 ~~i~v~v~d~~G~l~~i~~~la~~~inI~~i~~~~~~--~~~~~~~~~~d--~~~a~~~L~~~ 65 (144)
T 2f06_A 7 KQLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVSD--PDKAYKALKDN 65 (144)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEESC--HHHHHHHHHHT
T ss_pred EEEEEEecCCCcHHHHHHHHHHHCCCCEEEEEEEecC--CCCEEEEEeCC--HHHHHHHHHHc
Confidence 5666788999999999999999999999999886432 22455555432 24555556544
|
| >2x5o_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; ATP-binding, cell cycle, cell division, cell shape, cell WAL biogenesis/degradation; HET: KCX VSV; 1.46A {Escherichia coli} PDB: 2wjp_A* 2xpc_A* 2y1o_A* 2jff_A* 2jfh_A* 2uuo_A* 2uup_A* 2vtd_A* 2vte_A* 2jfg_A* 2y66_A* 2y67_A* 2y68_A* 4uag_A* 1e0d_A* 1uag_A* 1eeh_A* 3uag_A* 2uag_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.11 Score=56.51 Aligned_cols=109 Identities=19% Similarity=0.200 Sum_probs=67.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-Ch--hHHHHcCCeec---CHHHHhccCCEEEEccCCCcc---
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA--DKARAVGVELV---SFDQALATADFISLHMPLNPT--- 296 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~--~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~--- 296 (656)
++.||+|.|||+|..|.+.|+.|+..|++|.++|.+. .. .... .|+.+. ...+.+..+|.|++.-...+.
T Consensus 2 ~~~~~~v~viG~G~~G~~~a~~l~~~G~~v~~~D~~~~~~~~~~l~-~G~~~~~g~~~~~~~~~~d~vV~s~gi~~~~p~ 80 (439)
T 2x5o_A 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLP-EAVERHTGSLNDEWLMAADLIVASPGIALAHPS 80 (439)
T ss_dssp CCTTCCEEEECCHHHHHHHHHHHHTTTCCCEEEESSSSCTTGGGSC-TTSCEEESSCCHHHHHTCSEEEECTTSCTTCHH
T ss_pred CCCCCEEEEEeecHHHHHHHHHHHhCCCEEEEEECCCCcchhHHhh-CCCEEEECCCcHHHhccCCEEEeCCCCCCCCHH
Confidence 3578999999999999999999999999999999764 21 2233 577553 124556689999886432221
Q ss_pred -------ccccccHH-HH-hcCCCCcEEEEcCCCchhcHHHHHHhHhc
Q 006212 297 -------TSKIFNDE-TF-AKMKKGVRIVNVARGGVIDEEALVRALDS 335 (656)
Q Consensus 297 -------T~~li~~~-~l-~~mK~gailINvaRg~ivde~aL~~aL~~ 335 (656)
...++.+. .+ ..++...+-|-=+.|+--...-+...|++
T Consensus 81 ~~~a~~~~~~v~~~~~~~~~~~~~~vI~VTGTnGKTTT~~ml~~iL~~ 128 (439)
T 2x5o_A 81 LSAAADAGIEIVGDIELFCREAQAPIVAITGSNGKSTVTTLVGEMAKA 128 (439)
T ss_dssp HHHHHHTTCEEECHHHHHHHHCCSCEEEEECSSSHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCcEEEHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 11233332 12 22443334443345776555555555554
|
| >2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.21 Score=48.38 Aligned_cols=47 Identities=13% Similarity=0.105 Sum_probs=37.0
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD 607 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D 607 (656)
..|.+..+|+||+++.|++.|+++|.||-..+..... ++-++ ++.++
T Consensus 6 ~~ltv~~~DrpGiva~vs~~La~~g~NI~da~q~~~~-~~f~m-~~~v~ 52 (195)
T 2nyi_A 6 FVVSVAGSDRVGIVHDFSWALKNISANVESSRMACLG-GDFAM-IVLVS 52 (195)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEET-TEEEE-EEEEE
T ss_pred EEEEEEeCCCCcHHHHHHHHHHHCCCCEEEEEeEEEC-CeEEE-EEEEE
Confidence 4567789999999999999999999999999998533 44443 44443
|
| >3kzn_A Aotcase, N-acetylornithine carbamoyltransferase; transcarbamylase, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: KCX AOR; 1.80A {Xanthomonas campestris PV} PDB: 3kzc_A* 3kzm_A* 3kzk_A* 3kzo_A* 3m4j_A* 3m5d_A* 3m5c_A* 3l05_A* 3l02_A* 3m4n_A* 3l06_A* 3l04_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=2.3 Score=45.23 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=66.0
Q ss_pred hhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEec-------ChhHH
Q 006212 170 QAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGF-------GKVGS 242 (656)
Q Consensus 170 ~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGl-------G~IG~ 242 (656)
+.|.-..|+|.|. |.+..++ .+++=++.+.++ +...++.|++++++|. .++..
T Consensus 151 ~~a~~~~vPVIN~-g~~~HPt--QaL~Dl~Ti~e~-----------------~G~~dl~g~kv~~~~~~~gd~~~~~Va~ 210 (359)
T 3kzn_A 151 SFAKYSPVPVINM-ETITHPC--QELAHALALQEH-----------------FGTPDLRGKKYVLTWTYHPKPLNTAVAN 210 (359)
T ss_dssp HHHHHCSSCEEES-SSSCCHH--HHHHHHHHHHHH-----------------HTSSCCTTCEEEEEECCCSSCCCSHHHH
T ss_pred HHHHhCCCcccCc-ccccCch--HHHHHHHHHHHH-----------------cCCccccCCeEEEEEeecCCccccchhh
Confidence 4556678999996 5444333 122223322221 1123689999999976 36888
Q ss_pred HHHHHHhcCCCEEEEECCCC---C-hh-------HHHHcCCe--e-cCHHHHhccCCEEEEcc
Q 006212 243 EVARRAKGLGMNVIAHDPYA---P-AD-------KARAVGVE--L-VSFDQALATADFISLHM 291 (656)
Q Consensus 243 ~vA~~lk~~G~~Vi~~d~~~---~-~~-------~a~~~g~~--~-~~l~ell~~aDvV~l~~ 291 (656)
+....+..+|++|..+-|.. + .+ .+.+.|.. . .++++.+++||+|..-.
T Consensus 211 S~~~~~~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~g~~i~~~~d~~eav~~aDvvyt~r 273 (359)
T 3kzn_A 211 SALTIATRMGMDVTLLCPTPDYILDERYMDWAAQNVAESGGSLQVSHDIDSAYAGADVVYAKS 273 (359)
T ss_dssp HHHHHHHHTTCEEEEECSSGGGCCCHHHHHHHHHHHHHHSCEEEEECCHHHHHTTCSEEEEEC
T ss_pred hhHHHHHhccccEEEEecccccCCCHHHHHHHHHHHHhhCCCcccccCHHHHhcCCeEEEEEE
Confidence 99999999999999887742 1 11 12334543 2 38999999999998754
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.46 E-value=0.13 Score=53.68 Aligned_cols=45 Identities=29% Similarity=0.327 Sum_probs=36.1
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|+++.|+|. |.||..+++.++.+|.+|++.+++. ..+.+++.|.
T Consensus 166 ~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~ga 212 (343)
T 2eih_A 166 PGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAKALGA 212 (343)
T ss_dssp TTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcCC
Confidence 4889999999 9999999999999999999998764 2333444443
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=92.43 E-value=0.091 Score=55.55 Aligned_cols=85 Identities=14% Similarity=0.188 Sum_probs=53.6
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEEC-CC----CChhHH------HHc-CCeec---CHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAHD-PY----APADKA------RAV-GVELV---SFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~d-~~----~~~~~a------~~~-g~~~~---~l~ell~~aDvV~l~~P 292 (656)
.+|+|+| .|.+|+.+.+.|... ++++.... +. ...... ... ...+. +.++++.++|+|++|+|
T Consensus 5 ~kv~IvGatG~vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p 84 (337)
T 3dr3_A 5 LNTLIVGASGYAGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATA 84 (337)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSC
T ss_pred eEEEEECCCChHHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCC
Confidence 4799999 699999999999874 56776653 22 111111 110 12222 45555589999999999
Q ss_pred CCccccccccHHHHh-cCCCCcEEEEcCC
Q 006212 293 LNPTTSKIFNDETFA-KMKKGVRIVNVAR 320 (656)
Q Consensus 293 lt~~T~~li~~~~l~-~mK~gailINvaR 320 (656)
... ..+... .++.|+.+||.+.
T Consensus 85 ~~~------s~~~~~~~~~~g~~vIDlSa 107 (337)
T 3dr3_A 85 HEV------SHDLAPQFLEAGCVVFDLSG 107 (337)
T ss_dssp HHH------HHHHHHHHHHTTCEEEECSS
T ss_pred hHH------HHHHHHHHHHCCCEEEEcCC
Confidence 332 222221 2478999999984
|
| >1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 | Back alignment and structure |
|---|
Probab=92.41 E-value=0.29 Score=46.94 Aligned_cols=63 Identities=14% Similarity=0.152 Sum_probs=43.4
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeec------cCccEEEEEEeC--CCCCH-HHHHHHhc
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF------RRNHGIMAIGVD--EEPNQ-DSLKEIGK 620 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~------~gg~al~~i~~D--~~~~~-e~l~~L~~ 620 (656)
.+.|.+..+|+||+++.|+..|+++++||.++...... ..+.-.|.+.++ ...+. ++.++|..
T Consensus 93 ~~~l~v~~~D~~Gil~~v~~~l~~~~~nI~~~~~~t~~~~~~~~~~~~F~~~~~~~~~~~~~~~~l~~~l~~ 164 (192)
T 1u8s_A 93 TVEVYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDA 164 (192)
T ss_dssp EEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEEeCCCccHHHHHHHHHHHcCCcHHHhhhhcccCCccCCCCCEEEEEEEEeCCCCCCHHHHHHHHHH
Confidence 35666678999999999999999999999999886443 234455555554 33333 45555553
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=92.38 E-value=0.3 Score=51.68 Aligned_cols=88 Identities=16% Similarity=0.088 Sum_probs=57.2
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-c-----CHHHHhc-----cCCEEEEccCCC
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-V-----SFDQALA-----TADFISLHMPLN 294 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~-----~l~ell~-----~aDvV~l~~Plt 294 (656)
-.|++|.|+|. |.+|...++.++.+|.+|++.......+.++++|+.. + ++.+.+. ..|+|+-|+...
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~v~~~t~g~~d~v~d~~g~~ 242 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATCSPHNFDLAKSRGAEEVFDYRAPNLAQTIRTYTKNNLRYALDCITNV 242 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEECGGGHHHHHHTTCSEEEETTSTTHHHHHHHHTTTCCCEEEESSCSH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCHHHHHHHHHcCCcEEEECCCchHHHHHHHHccCCccEEEECCCch
Confidence 46899999999 8999999999999999999875222456677787642 1 2222221 267777666521
Q ss_pred ccccccccHHHHhcC-CCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKM-KKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~m-K~gailINva 319 (656)
. + -...+..| +++..++.++
T Consensus 243 ~-~----~~~~~~~l~~~~G~iv~~g 263 (371)
T 3gqv_A 243 E-S----TTFCFAAIGRAGGHYVSLN 263 (371)
T ss_dssp H-H----HHHHHHHSCTTCEEEEESS
T ss_pred H-H----HHHHHHHhhcCCCEEEEEe
Confidence 1 1 12334456 4666777665
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.1 Score=55.86 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeecC-----H-HHHhc------cCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELVS-----F-DQALA------TADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~~-----l-~ell~------~aDvV~l~~Pl 293 (656)
.|++|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|+..++ + .+.+. ..|+|+-++..
T Consensus 185 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~~i~~~~~~~~~~~~~~~~~g~g~Dvvid~~g~ 264 (398)
T 2dph_A 185 PGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSDAGFETIDLRNSAPLRDQIDQILGKPEVDCGVDAVGF 264 (398)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHTTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECSCT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCcEEcCCCcchHHHHHHHHhCCCCCCEEEECCCC
Confidence 48899999999999999999999999 999999765 34566677764321 1 22111 46777777653
Q ss_pred Ccc----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~----------T~~li~~~~l~~mK~gailINva 319 (656)
... .... -...+..++++..++.++
T Consensus 265 ~~~~~~~~~~~~~~~~~-~~~~~~~l~~gG~iv~~G 299 (398)
T 2dph_A 265 EAHGLGDEANTETPNGA-LNSLFDVVRAGGAIGIPG 299 (398)
T ss_dssp TCBCSGGGTTSBCTTHH-HHHHHHHEEEEEEEECCS
T ss_pred ccccccccccccccHHH-HHHHHHHHhcCCEEEEec
Confidence 210 0001 134455667777777665
|
| >3mw9_A GDH 1, glutamate dehydrogenase 1; allostery, inhibition, oxidoreducta; HET: GLU GTP NAD; 2.40A {Bos taurus} SCOP: c.2.1.7 c.58.1.1 PDB: 3mvo_A* 3mvq_A* 3qmu_A* 3etd_A* 3ete_A* 3etg_A* 1l1f_A 1nr1_A 1nr7_A 1nqt_A 1hwx_A* 1hwy_A* 1hwz_A* | Back alignment and structure |
|---|
Probab=92.34 E-value=0.78 Score=50.73 Aligned_cols=90 Identities=22% Similarity=0.336 Sum_probs=56.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhHHH----HcC-------CeecCHHHHh-ccC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADKAR----AVG-------VELVSFDQAL-ATA 284 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~a~----~~g-------~~~~~l~ell-~~a 284 (656)
+|.|+||.|-|+|++|+..|+.|...|.+|++ |||.- +.+... +.| .+.++ ++++ .+|
T Consensus 241 ~l~g~tVaVQG~GNVG~~aa~~L~e~GakVVavsDs~G~iyd~~Gid~~~l~~~k~~~g~i~~~~~a~~~~-~~il~~~~ 319 (501)
T 3mw9_A 241 GFGDKTFVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYE-GSILEVDC 319 (501)
T ss_dssp SSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEECSSCEEECTTCCCHHHHHHHHHHHSSSTTCTTSEEEC-SCGGGSCC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHhcCCeecccCceeec-cccccccc
Confidence 58999999999999999999999999999987 45542 322211 111 11221 1222 467
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
|+.+-|.- .+.|+.+....++ -.+|+-.|-+.
T Consensus 320 DIliPcA~-----~n~I~~~na~~l~-akiV~EgAN~p 351 (501)
T 3mw9_A 320 DILIPAAS-----EKQLTKSNAPRVK-AKIIAEGANGP 351 (501)
T ss_dssp SEEEECSS-----SCCBCTTTGGGCC-CSEEECCSSSC
T ss_pred eEEeeccc-----cCccCHhHHHHcC-ceEEEeCCCCc
Confidence 77776653 3456666666664 23555555555
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=92.31 E-value=0.071 Score=55.58 Aligned_cols=35 Identities=31% Similarity=0.352 Sum_probs=32.1
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|+++.|+|. |.||..+++.++..|.+|++.+++.
T Consensus 155 ~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~ 190 (345)
T 2j3h_A 155 EGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSK 190 (345)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 5899999997 9999999999999999999998764
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=92.19 E-value=0.27 Score=50.89 Aligned_cols=109 Identities=14% Similarity=0.130 Sum_probs=62.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCC--EEEEECC--CCChhH--HHHc--------CCeec-CHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDP--YAPADK--ARAV--------GVELV-SFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~--~~~~~~--a~~~--------g~~~~-~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|+| .|.+|..++..|...|. ++..+|. ...... +.++ .+... +-.+.++.||+|+++...
T Consensus 1 mKI~IiGAaG~vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~ 80 (303)
T 1o6z_A 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (303)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCC
Confidence 3799999 99999999999876664 7888997 431100 1110 11111 225678999999999874
Q ss_pred Cccccccc-------c----H---HHHhcCCCCcEEEEcCCCchhc--HHHHHHh--HhcCCeEEE
Q 006212 294 NPTTSKIF-------N----D---ETFAKMKKGVRIVNVARGGVID--EEALVRA--LDSGVVAQA 341 (656)
Q Consensus 294 t~~T~~li-------~----~---~~l~~mK~gailINvaRg~ivd--e~aL~~a--L~~g~i~gA 341 (656)
.. ..++- | . +.+....+.+++++++ ..+| ...+.+. +...++.|.
T Consensus 81 ~~-~~g~~r~dl~~~N~~i~~~i~~~i~~~~p~~~viv~S--NPv~~~~~~~~~~~~~p~~rviG~ 143 (303)
T 1o6z_A 81 PR-QPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS--NPVDLLNRHLYEAGDRSREQVIGF 143 (303)
T ss_dssp CC-CTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC--SSHHHHHHHHHHHSSSCGGGEEEC
T ss_pred CC-CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEeC--ChHHHHHHHHHHHcCCCHHHeeec
Confidence 32 22221 1 1 1222346788999874 4444 2333332 333466665
|
| >2x0j_A Malate dehydrogenase; oxidoreductase, hyperthermophilic, tricarboxylic acid cycle; HET: ENA; 2.79A {Archaeoglobus fulgidus dsm 4304} PDB: 2x0i_A* | Back alignment and structure |
|---|
Probab=92.15 E-value=0.23 Score=51.47 Aligned_cols=96 Identities=18% Similarity=0.124 Sum_probs=57.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCC--hhHHHHc-------CC--ee--cCHHHHhccCCEEEEccC--
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAP--ADKARAV-------GV--EL--VSFDQALATADFISLHMP-- 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~--~~~a~~~-------g~--~~--~~l~ell~~aDvV~l~~P-- 292 (656)
.+|+|||.|.||+++|..|+..+ -++..||.... ...+.++ +. .. .+--+.+++||+|++..-
T Consensus 1 MKV~IiGaG~VG~~~a~~l~~~~~~~el~L~Di~~~~~~G~a~DL~h~~~~~~~~~~i~~~~d~~~~~~aDvVvitAG~p 80 (294)
T 2x0j_A 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHGGGTCCCEEEEESCGGGGTTCSEEEECCCCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEeCCCCcchhhhhhhhcccccCCCCCeEecCCCHHHhCCCCEEEEecCCC
Confidence 47999999999999999887544 48999997642 1122221 11 11 122357899999999874
Q ss_pred CCc-cccc-cc--cHH-------HHhcCCCCcEEEEcCCCchhcHH
Q 006212 293 LNP-TTSK-IF--NDE-------TFAKMKKGVRIVNVARGGVIDEE 327 (656)
Q Consensus 293 lt~-~T~~-li--~~~-------~l~~mK~gailINvaRg~ivde~ 327 (656)
..| .||. ++ |.+ .+.+-.|+++++.++ ..+|.-
T Consensus 81 rkpGmtR~dLl~~Na~I~~~i~~~i~~~~p~aivlvvs--NPvd~~ 124 (294)
T 2x0j_A 81 RKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVT--NPMDVM 124 (294)
T ss_dssp CCSSSCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECS--SSHHHH
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHHHhcCCceEEEEec--Ccchhh
Confidence 222 1222 11 211 222346778888875 445533
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=92.11 E-value=0.18 Score=54.78 Aligned_cols=87 Identities=21% Similarity=0.195 Sum_probs=62.5
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CH------------------------HH-
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SF------------------------DQ- 279 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l------------------------~e- 279 (656)
.|++|.|+|. |.||...++.++..|.+|++.++.. ..+.++++|...+ +. ++
T Consensus 220 ~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 299 (447)
T 4a0s_A 220 QGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVRALGCDLVINRAELGITDDIADDPRRVVETGRKLAKLV 299 (447)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCCCEEEHHHHTCCTTGGGCHHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHhcCCCEEEecccccccccccccccccchhhhHHHHHH
Confidence 5899999998 9999999999999999999987654 3456677776421 21 11
Q ss_pred --Hh-ccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 280 --AL-ATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 280 --ll-~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
+. ...|+|+-++.. + .-...+..|+++..+++++.
T Consensus 300 ~~~~g~g~Dvvid~~G~-~-----~~~~~~~~l~~~G~iv~~G~ 337 (447)
T 4a0s_A 300 VEKAGREPDIVFEHTGR-V-----TFGLSVIVARRGGTVVTCGS 337 (447)
T ss_dssp HHHHSSCCSEEEECSCH-H-----HHHHHHHHSCTTCEEEESCC
T ss_pred HHHhCCCceEEEECCCc-h-----HHHHHHHHHhcCCEEEEEec
Confidence 11 247888887762 1 12455667888888888873
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.08 E-value=0.11 Score=53.85 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=35.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|+++.|.| .|.||..+++.++..|.+|++.++.. ..+.+++.|.
T Consensus 140 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~~~~g~ 186 (327)
T 1qor_A 140 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 186 (327)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcCC
Confidence 489999999 79999999999999999999998764 2233444443
|
| >3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.22 Score=52.09 Aligned_cols=85 Identities=16% Similarity=0.165 Sum_probs=57.1
Q ss_pred CCEEEEE-ecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------CHHHHh------ccCCEEEEccCCC
Q 006212 229 GKTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------SFDQAL------ATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGII-GlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell------~~aDvV~l~~Plt 294 (656)
++++.|. |.|.||...++.++.+|.+|++.+++. ..+.++++|...+ ++.+.+ ...|+|+-|+...
T Consensus 165 ~~~vli~gg~g~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~~~g~D~vid~~g~~ 244 (349)
T 3pi7_A 165 EKAFVMTAGASQLCKLIIGLAKEEGFRPIVTVRRDEQIALLKDIGAAHVLNEKAPDFEATLREVMKAEQPRIFLDAVTGP 244 (349)
T ss_dssp CSEEEESSTTSHHHHHHHHHHHHHTCEEEEEESCGGGHHHHHHHTCSEEEETTSTTHHHHHHHHHHHHCCCEEEESSCHH
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEEEECCcHHHHHHHHHHhcCCCCcEEEECCCCh
Confidence 3677665 999999999999999999999998765 4566777776321 222221 2477777766521
Q ss_pred ccccccccHHHHhcCCCCcEEEEcC
Q 006212 295 PTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 295 ~~T~~li~~~~l~~mK~gailINva 319 (656)
. . ...+..|+++..++.++
T Consensus 245 -~----~-~~~~~~l~~~G~iv~~G 263 (349)
T 3pi7_A 245 -L----A-SAIFNAMPKRARWIIYG 263 (349)
T ss_dssp -H----H-HHHHHHSCTTCEEEECC
T ss_pred -h----H-HHHHhhhcCCCEEEEEe
Confidence 1 1 44556677777777765
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=91.98 E-value=0.088 Score=56.82 Aligned_cols=86 Identities=14% Similarity=0.187 Sum_probs=55.6
Q ss_pred CEEEEEecChhHHHHHHHHhcCC---CEEEEECCCCCh-h-HHHHc------CCee--------cCHHHHhcc--CCEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG---MNVIAHDPYAPA-D-KARAV------GVEL--------VSFDQALAT--ADFIS 288 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G---~~Vi~~d~~~~~-~-~a~~~------g~~~--------~~l~ell~~--aDvV~ 288 (656)
++|+|+|.|.||+.+++.|...| .+|.++|++... + .+.+. .+.. .++++++++ +|+|+
T Consensus 2 ~kVlIiGaGgiG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVi 81 (405)
T 4ina_A 2 AKVLQIGAGGVGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVL 81 (405)
T ss_dssp CEEEEECCSHHHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEE
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEE
Confidence 58999999999999999999887 499999987522 1 12221 1221 136677877 89999
Q ss_pred EccCCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 289 LHMPLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 289 l~~Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
.++|... ...++ + ..++.|.-++|++.
T Consensus 82 n~ag~~~-~~~v~-~---a~l~~g~~vvD~a~ 108 (405)
T 4ina_A 82 NIALPYQ-DLTIM-E---ACLRTGVPYLDTAN 108 (405)
T ss_dssp ECSCGGG-HHHHH-H---HHHHHTCCEEESSC
T ss_pred ECCCccc-ChHHH-H---HHHHhCCCEEEecC
Confidence 9988332 11111 1 22355666777653
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=91.89 E-value=0.11 Score=46.74 Aligned_cols=97 Identities=18% Similarity=0.164 Sum_probs=63.9
Q ss_pred CEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+|+|||. |..|..+.+.|+.+|++|+..+|.... -.|... -++.++-. -|++++++| .+.+..++.+-
T Consensus 5 ~siAVVGaS~~~~~~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e~ 78 (122)
T 3ff4_A 5 KKTLILGATPETNRYAYLAAERLKSHGHEFIPVGRKKGE----VLGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNYI 78 (122)
T ss_dssp CCEEEETCCSCTTSHHHHHHHHHHHHTCCEEEESSSCSE----ETTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHHH
T ss_pred CEEEEEccCCCCCCHHHHHHHHHHHCCCeEEEECCCCCc----CCCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHHH
Confidence 68999998 569999999999999999999987421 135443 36777766 999999999 33445555332
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
. .+...++++.-+ ..+ +++.+..++..+
T Consensus 79 -~-~~g~k~v~~~~G---~~~-~e~~~~a~~~Gi 106 (122)
T 3ff4_A 79 -L-SLKPKRVIFNPG---TEN-EELEEILSENGI 106 (122)
T ss_dssp -H-HHCCSEEEECTT---CCC-HHHHHHHHHTTC
T ss_pred -H-hcCCCEEEECCC---CCh-HHHHHHHHHcCC
Confidence 2 234446666543 233 455555555434
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=91.84 E-value=0.25 Score=54.60 Aligned_cols=65 Identities=12% Similarity=0.131 Sum_probs=44.5
Q ss_pred CCEEEEEecChh-HHHHHHHHhcC-----CCEEEEECCCCCh-h----HHH----HcC----Cee-cCHHHHhccCCEEE
Q 006212 229 GKTLAVMGFGKV-GSEVARRAKGL-----GMNVIAHDPYAPA-D----KAR----AVG----VEL-VSFDQALATADFIS 288 (656)
Q Consensus 229 gktvGIIGlG~I-G~~vA~~lk~~-----G~~Vi~~d~~~~~-~----~a~----~~g----~~~-~~l~ell~~aDvV~ 288 (656)
.++|+|||.|.. |.++|..|... +.+|..||..... + ... ..+ +.. .++++.++.||+|+
T Consensus 28 ~~KIaVIGaGsv~~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VV 107 (472)
T 1u8x_X 28 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 107 (472)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CCEEEEECCCHHHHHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEE
Confidence 458999999998 55566555433 5689999987521 1 011 112 122 37889999999999
Q ss_pred EccCC
Q 006212 289 LHMPL 293 (656)
Q Consensus 289 l~~Pl 293 (656)
+++|.
T Consensus 108 iaag~ 112 (472)
T 1u8x_X 108 AHIRV 112 (472)
T ss_dssp ECCCT
T ss_pred EcCCC
Confidence 99985
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=91.80 E-value=0.23 Score=51.02 Aligned_cols=105 Identities=12% Similarity=0.092 Sum_probs=70.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCc----------
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMPLNP---------- 295 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~---------- 295 (656)
+.|++|.|+|-......+++.|...|++|..+.... +.....|.... ++.+.++++|+|+...|...
T Consensus 5 ~~~mki~v~~~~~~~~~~~~~L~~~g~~v~~~~~~~--~~~~~~g~~~~~~~~~~~~~~d~ii~~~~~~~~~~~i~s~~a 82 (300)
T 2rir_A 5 LTGLKIAVIGGDARQLEIIRKLTEQQADIYLVGFDQ--LDHGFTGAVKCNIDEIPFQQIDSIILPVSATTGEGVVSTVFS 82 (300)
T ss_dssp CCSCEEEEESBCHHHHHHHHHHHHTTCEEEEESCTT--SSCCCTTEEECCGGGSCGGGCSEEECCSSCEETTTEECBSSC
T ss_pred ccCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeccc--cccccccceeccchHHHHhcCCEEEeccccccCCcccccccc
Confidence 568899999999999999999999999998774211 11112233333 46677889999987554321
Q ss_pred cccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.+...++++.++.++++.+|. ++ + |..++.+++.+..|
T Consensus 83 ~~~~~~~~~~l~~~~~l~~i~-~g---~-~~~d~~~~~~~~gi 120 (300)
T 2rir_A 83 NEEVVLKQDHLDRTPAHCVIF-SG---I-SNAYLENIAAQAKR 120 (300)
T ss_dssp SSCEECCHHHHHTSCTTCEEE-ES---S-CCHHHHHHHHHTTC
T ss_pred cCCccchHHHHhhcCCCCEEE-Ee---c-CCHHHHHHHHHCCC
Confidence 123347888999999988887 33 3 55554444554444
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=91.80 E-value=0.11 Score=54.41 Aligned_cols=64 Identities=17% Similarity=0.160 Sum_probs=46.5
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCC--CEEEEECCCCChhHHHHc---CC----ee----cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLG--MNVIAHDPYAPADKARAV---GV----EL----VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~~---g~----~~----~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|+| .|.+|..++..|...| .+|..+|.......+.++ .. .. .++.+.++.||+|+++.+.
T Consensus 9 mKI~ViGAaG~VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~ 86 (326)
T 1smk_A 9 FKVAILGAAGGIGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGV 86 (326)
T ss_dssp EEEEEETTTSTTHHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCC
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCc
Confidence 5899999 8999999999998777 789999865432222111 11 11 1467889999999999873
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.16 Score=49.61 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.4
Q ss_pred cCCCEEEEEe-cChhHHHHHHHHhcCCC--EEEEECCCCC-hhHHHHcCCee--------cCHHHHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAP-ADKARAVGVEL--------VSFDQALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~~~~-~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Pl 293 (656)
+.+|++.|.| .|.||+.+++.|...|. +|++.++... .......++.. .+++++++.+|+|+.+...
T Consensus 16 m~~~~vlVtGasg~iG~~l~~~L~~~G~~~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~ag~ 94 (242)
T 2bka_A 16 MQNKSVFILGASGETGRVLLKEILEQGLFSKVTLIGRRKLTFDEEAYKNVNQEVVDFEKLDDYASAFQGHDVGFCCLGT 94 (242)
T ss_dssp HTCCEEEEECTTSHHHHHHHHHHHHHTCCSEEEEEESSCCCCCSGGGGGCEEEECCGGGGGGGGGGGSSCSEEEECCCC
T ss_pred hcCCeEEEECCCcHHHHHHHHHHHcCCCCCEEEEEEcCCCCccccccCCceEEecCcCCHHHHHHHhcCCCEEEECCCc
Confidence 5689999999 69999999999998899 9999887642 11111112221 1345667788998887764
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.15 Score=53.63 Aligned_cols=44 Identities=14% Similarity=0.203 Sum_probs=35.4
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVG 271 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g 271 (656)
.|+++.|+| .|.||..+++.++..|.+|++.++.. ..+.+++.|
T Consensus 162 ~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~g 207 (354)
T 2j8z_A 162 AGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMAEKLG 207 (354)
T ss_dssp TTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 489999999 79999999999999999999998764 223334444
|
| >3c8m_A Homoserine dehydrogenase; structural genomics, APC89447, PS protein structure initiative, midwest center for structural genomics; HET: MSE; 1.90A {Thermoplasma volcanium GSS1} PDB: 3jsa_A* | Back alignment and structure |
|---|
Probab=91.75 E-value=0.15 Score=53.67 Aligned_cols=105 Identities=19% Similarity=0.249 Sum_probs=61.2
Q ss_pred CEEEEEecChhHHHHHHHHhcC--------CCEEEE-ECCCCCh-hH-------HH---HcCCe-e-c---CHHHHh-cc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL--------GMNVIA-HDPYAPA-DK-------AR---AVGVE-L-V---SFDQAL-AT 283 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~--------G~~Vi~-~d~~~~~-~~-------a~---~~g~~-~-~---~l~ell-~~ 283 (656)
-+|||||+|.||+.+++.++.. +++|.+ +|+.... .. +. ..++. + . ++++++ .+
T Consensus 7 irvgIiG~G~VG~~~~~~l~~~~~~~~~g~~~~vvaV~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ll~~~ 86 (331)
T 3c8m_A 7 INLSIFGLGNVGLNLLRIIRSFNEENRLGLKFNVVFVADSLHSYYNERIDIGKVISYKEKGSLDSLEYESISASEALARD 86 (331)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHCSSSEEEEEEEEECSSCEEECTTCCHHHHHHHHHTTCGGGCCSEECCHHHHHHSS
T ss_pred EeEEEEecCHHHHHHHHHHHhChHHHhcCCcEEEEEEEECChHHhhcccChHHHhhhhccCCcccccCCCCCHHHHhCCC
Confidence 3799999999999999988643 367654 5765411 10 11 11321 1 2 788887 46
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDS 335 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~ 335 (656)
.|+|+.|+|.. .+...--+-....|+.|.-++-+-...+. ..+.|.++.++
T Consensus 87 iDvVv~~t~~~-~~~~~~~~~~~~AL~aGkhVvtanK~pla~~~~eL~~~A~~ 138 (331)
T 3c8m_A 87 FDIVVDATPAS-ADGKKELAFYKETFENGKDVVTANKSGLANFWPEIMEYARS 138 (331)
T ss_dssp CSEEEECSCCC-SSSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred CCEEEECCCCC-CccchHHHHHHHHHHCCCeEEecCchhhHHHHHHHHHHHHH
Confidence 89999999954 22221112233446667666655444442 24555554444
|
| >3nv9_A Malic enzyme; rossmann fold, oxidoreductase; 2.25A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=91.75 E-value=1.1 Score=49.18 Aligned_cols=122 Identities=15% Similarity=0.110 Sum_probs=90.4
Q ss_pred CceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC--
Q 006212 176 GCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-- 253 (656)
Q Consensus 176 GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-- 253 (656)
.|.|.|.- -.-+|=-+++-+++.+| ..|..|...+|.|.|.|.-|-.+|+.+...|+
T Consensus 187 ~ipvFnDD---~qGTA~V~lAgllnAlk------------------i~gk~l~d~riV~~GAGaAGigia~ll~~~G~~~ 245 (487)
T 3nv9_A 187 DIPVWHDD---QQGTASVTLAGLLNALK------------------LVKKDIHECRMVFIGAGSSNTTCLRLIVTAGADP 245 (487)
T ss_dssp SSCEEETT---THHHHHHHHHHHHHHHH------------------HHTCCGGGCCEEEECCSHHHHHHHHHHHHTTCCG
T ss_pred cCCccccc---cchHHHHHHHHHHHHHH------------------HhCCChhhcEEEEECCCHHHHHHHHHHHHcCCCc
Confidence 79999985 34455567777777776 34678889999999999999999999999998
Q ss_pred -EEEEECCCC----Ch-hH------------HHHcCC-eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcE
Q 006212 254 -NVIAHDPYA----PA-DK------------ARAVGV-ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVR 314 (656)
Q Consensus 254 -~Vi~~d~~~----~~-~~------------a~~~g~-~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gai 314 (656)
+|+.+|..- .. +. +....- ...+|.|+++.+|+++=+- .. .-+.+.++.++.|.+.++
T Consensus 246 ~~i~l~D~~Gli~~~R~~l~~~~~~~~k~~~A~~~n~~~~~~L~eav~~adVlIG~S-~~--~pg~ft~e~V~~Ma~~PI 322 (487)
T 3nv9_A 246 KKIVMFDSKGSLHNGREDIKKDTRFYRKWEICETTNPSKFGSIAEACVGADVLISLS-TP--GPGVVKAEWIKSMGEKPI 322 (487)
T ss_dssp GGEEEEETTEECCTTCHHHHHCGGGHHHHHHHHHSCTTCCCSHHHHHTTCSEEEECC-CS--SCCCCCHHHHHTSCSSCE
T ss_pred ccEEEEeccccccCCcchhhhhcccHHHHHHHHhcccccCCCHHHHHhcCCEEEEec-cc--CCCCCCHHHHHhhcCCCE
Confidence 799988651 11 11 111111 2347999999999775433 11 146899999999999999
Q ss_pred EEEcCCC
Q 006212 315 IVNVARG 321 (656)
Q Consensus 315 lINvaRg 321 (656)
|.-.+.-
T Consensus 323 IFaLSNP 329 (487)
T 3nv9_A 323 VFCCANP 329 (487)
T ss_dssp EEECCSS
T ss_pred EEECCCC
Confidence 9999854
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=91.74 E-value=0.24 Score=48.20 Aligned_cols=67 Identities=16% Similarity=0.107 Sum_probs=46.9
Q ss_pred cCCCEEEEEe-cChhHHHHHHHHhcC--CCEEEEECCCCChhHHHHcCCee-----c---CHHHHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMG-FGKVGSEVARRAKGL--GMNVIAHDPYAPADKARAVGVEL-----V---SFDQALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIG-lG~IG~~vA~~lk~~--G~~Vi~~d~~~~~~~a~~~g~~~-----~---~l~ell~~aDvV~l~~Pl 293 (656)
..+|++.|.| .|.||+.+++.|... |++|++.++..........++.. . +++++++.+|+|+.+...
T Consensus 2 ~~~~~ilVtGasG~iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~~ 79 (253)
T 1xq6_A 2 ANLPTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTSA 79 (253)
T ss_dssp CSCCEEEEESTTSHHHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHhcCCCcEEEEEEcCCCchhhcCCCeeEEEecCCCHHHHHHHHcCCCEEEEeccc
Confidence 3578999998 699999999999987 89999998764211111112221 1 355678888998877653
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.18 Score=55.36 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=0.0
Q ss_pred EEEEEecChhHHHHHHHHhc----------CCCEEEE-ECCCCChhHHHHcCCeec-CHHHHhc--cCCEEEEccC
Q 006212 231 TLAVMGFGKVGSEVARRAKG----------LGMNVIA-HDPYAPADKARAVGVELV-SFDQALA--TADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~----------~G~~Vi~-~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~P 292 (656)
+|||||+|.||+.+++.++. .+++|.+ +|++.........+..+. ++++++. +.|+|+.|+|
T Consensus 12 rIgIIG~G~VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~~~~~~~~d~~ell~d~diDvVve~tp 87 (444)
T 3mtj_A 12 HVGLLGLGTVGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALAGGLPLTTNPFDVVDDPEIDIVVELIG 87 (444)
T ss_dssp EEEEECCHHHHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHHTTCCEESCTHHHHTCTTCCEEEECCC
T ss_pred cEEEECCCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhcccCcccCCHHHHhcCCCCCEEEEcCC
|
| >3on5_A BH1974 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; 2.80A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=91.73 E-value=0.27 Score=52.37 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=88.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~ 308 (656)
--++.|+|.|.+|+++|+.++.+|++|.++|++..... .+-++.+|-++..-| .+.+..
T Consensus 199 ~~~L~I~GaGhva~aLa~la~~lgf~V~v~D~R~~~~~-----------~~~fp~a~~v~~~~p----------~~~~~~ 257 (362)
T 3on5_A 199 KERLIIFGAGPDVPPLVTFASNVGFYTVVTDWRPNQCE-----------KHFFPDADEIIVDFP----------ADFLRK 257 (362)
T ss_dssp CEEEEEECCSTTHHHHHHHHHHHTEEEEEEESCGGGGC-----------GGGCTTCSEEEESCH----------HHHHHH
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEECCCccccc-----------cccCCCceEEecCCH----------HHHHhh
Confidence 34799999999999999999999999999998742110 112355665554444 223333
Q ss_pred --CCCCcEEEEcCCCchhcHHHHHHhHhcC--CeEEEEeec-----cCCCCCCCCCccccCCcEEEcC---CCCCCcHHH
Q 006212 309 --MKKGVRIVNVARGGVIDEEALVRALDSG--VVAQAALDV-----FTEEPPAKDSKLVQHENVTVTP---HLGASTKEA 376 (656)
Q Consensus 309 --mK~gailINvaRg~ivde~aL~~aL~~g--~i~gA~lDV-----~~~EP~~~~~~L~~~~nvilTP---H~g~~T~ea 376 (656)
+.+++.++=+.++.-.|...|..+|+.. .|+-.|+-. ....- ...+ |-+| .+|+.|+
T Consensus 258 ~~~~~~t~vvv~TH~h~~D~~~L~~aL~~~~~YiG~iGSr~R~~rl~~~g~--------~~~r-i~~PIGL~Iga~tP-- 326 (362)
T 3on5_A 258 FLIRPDDFVLIMTHHFQKDQEILHFLLEKELRYIGILGSKERTRRLLQNRK--------PPDH-LYSPVGLSIDAQGP-- 326 (362)
T ss_dssp SCCCTTCEEEECCSCHHHHHHHHHHHSSSCCSEEEESSCHHHHHHHHTSCC--------CCTT-EESSCSCCSCCCSH--
T ss_pred cCCCCCeEEEEEeCCchhhHHHHHHHhcCCCCEEEEeCCHHHHHHHHhcCC--------cHhh-eECCCCCCCCCCCH--
Confidence 5678888888888888888888888764 333223221 11110 0122 4555 3667887
Q ss_pred HHHHHHHHHHHHHHHHcCC
Q 006212 377 QEGVAIEIAEAVVGALRGE 395 (656)
Q Consensus 377 ~~~~~~~~~~~i~~~l~g~ 395 (656)
+.++..++.+|....++.
T Consensus 327 -~EIAvSI~AEiia~~~~~ 344 (362)
T 3on5_A 327 -EEIAISIVAQLIQLIRSR 344 (362)
T ss_dssp -HHHHHHHHHHHHHHHHHS
T ss_pred -HHHHHHHHHHHHHHHhCC
Confidence 466788888888888776
|
| >3cmc_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase; microspectrophotometry, reaction intermediate, dehydrogenase phosphate binding site; HET: G3H NAD; 1.77A {Bacillus stearothermophilus} SCOP: c.2.1.3 d.81.1.1 PDB: 2gd1_O 1gd1_O* 1npt_O* 1nqa_O* 1nqo_O* 1nq5_O* 2dbv_O* 1dbv_O* 3dbv_O* 4dbv_O* | Back alignment and structure |
|---|
Probab=91.72 E-value=0.17 Score=53.32 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=25.0
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEEC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHD 259 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d 259 (656)
+|||+|+|+||+.+.+.+... .++|.+.+
T Consensus 3 kVgI~G~G~iGr~l~R~l~~~~~veivain 32 (334)
T 3cmc_O 3 KVGINGFGRIGRNVFRAALKNPDIEVVAVN 32 (334)
T ss_dssp EEEEESCSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHhCCCCeEEEEEe
Confidence 799999999999999998765 68887653
|
| >3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Vibrio fischeri} | Back alignment and structure |
|---|
Probab=91.67 E-value=0.17 Score=45.61 Aligned_cols=66 Identities=18% Similarity=0.277 Sum_probs=44.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcC-CCEEEEE-CCCCChhHHHHcCCeec---CHHHHhc--cCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADKARAVGVELV---SFDQALA--TADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~~~a~~~g~~~~---~l~ell~--~aDvV~l~~Plt 294 (656)
.+++.|+|.|..|+.+++.++.. |+++++| |.........-.|+.+. ++.++++ ..|.|++++|..
T Consensus 4 ~~~vlIiGaG~~g~~l~~~l~~~~g~~vvg~~d~~~~~~g~~i~g~pV~g~~~l~~~~~~~~id~viia~~~~ 76 (141)
T 3nkl_A 4 KKKVLIYGAGSAGLQLANMLRQGKEFHPIAFIDDDRKKHKTTMQGITIYRPKYLERLIKKHCISTVLLAVPSA 76 (141)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHSSSEEEEEEECSCGGGTTCEETTEEEECGGGHHHHHHHHTCCEEEECCTTS
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCcEEEEEEECCcccCCCEecCeEEECHHHHHHHHHHCCCCEEEEeCCCC
Confidence 56899999999999999999854 8999885 65431110011244433 4555554 578999999954
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.60 E-value=0.25 Score=52.22 Aligned_cols=45 Identities=22% Similarity=0.381 Sum_probs=37.8
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhc-CCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKG-LGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~-~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|+| .|.+|...++.++. .|.+|++.++.. ..+.++++|+
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~~lGa 218 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVKSLGA 218 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHcCC
Confidence 588999999 99999999999997 599999999865 4455666765
|
| >4id9_A Short-chain dehydrogenase/reductase; putative dehydrogenase, enzyme function initiative, EFI, STR genomics, oxidoreductase; HET: NAD; 1.60A {Agrobacterium fabrum} PDB: 4idg_A* | Back alignment and structure |
|---|
Probab=91.56 E-value=0.19 Score=51.75 Aligned_cols=66 Identities=20% Similarity=0.173 Sum_probs=45.9
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee--------cCHHHHhccCCEEEEccCCC
Q 006212 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 224 g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~Plt 294 (656)
..+..+|+|.|.|. |.||+.+++.|...|++|++.++.... .++.. .+++++++.+|+|+-+....
T Consensus 14 ~~~~~~~~vlVtGatG~iG~~l~~~L~~~G~~V~~~~r~~~~-----~~~~~~~~Dl~d~~~~~~~~~~~d~vih~A~~~ 88 (347)
T 4id9_A 14 LVPRGSHMILVTGSAGRVGRAVVAALRTQGRTVRGFDLRPSG-----TGGEEVVGSLEDGQALSDAIMGVSAVLHLGAFM 88 (347)
T ss_dssp -------CEEEETTTSHHHHHHHHHHHHTTCCEEEEESSCCS-----SCCSEEESCTTCHHHHHHHHTTCSEEEECCCCC
T ss_pred ccccCCCEEEEECCCChHHHHHHHHHHhCCCEEEEEeCCCCC-----CCccEEecCcCCHHHHHHHHhCCCEEEECCccc
Confidence 35688999999997 999999999999999999999876532 22221 13567788999998776543
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=91.54 E-value=0.15 Score=53.22 Aligned_cols=46 Identities=30% Similarity=0.379 Sum_probs=38.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcC-CCEEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGL-GMNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.+|.|+|.|.+|...++.++.+ |.+|++.|+.. ..+.++++|+.
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~~lGa~ 218 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAREVGAD 218 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHTTCS
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCC
Confidence 488999999999999999999987 78999998775 45667777763
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=91.47 E-value=0.11 Score=53.67 Aligned_cols=100 Identities=19% Similarity=0.262 Sum_probs=61.3
Q ss_pred EEEEEec-ChhHHHHHHHHhcCCCEEE-EECCCCChhHHHHcCCeec-CHHHHhc--cCCEEEEccCCCccccccccHHH
Q 006212 231 TLAVMGF-GKVGSEVARRAKGLGMNVI-AHDPYAPADKARAVGVELV-SFDQALA--TADFISLHMPLNPTTSKIFNDET 305 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~G~~Vi-~~d~~~~~~~a~~~g~~~~-~l~ell~--~aDvV~l~~Plt~~T~~li~~~~ 305 (656)
++.|+|. |++|+.+++.++..|++++ ..+|....+. -.|+... +++++.. .+|++++++|. +.+...+ ++.
T Consensus 15 ~v~V~Gasg~~G~~~~~~l~~~g~~~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v-~ea 90 (294)
T 2yv1_A 15 KAIVQGITGRQGSFHTKKMLECGTKIVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAV-FEA 90 (294)
T ss_dssp CEEEETTTSHHHHHHHHHHHHTTCCEEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHH-HHH
T ss_pred EEEEECCCCCHHHHHHHHHHhCCCeEEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHH-HHH
Confidence 4778899 9999999999998888733 5676532111 1466544 7999988 89999999992 2233332 222
Q ss_pred HhcCCCCcEEEEcCCC-chhcHHHHHHhHhcC
Q 006212 306 FAKMKKGVRIVNVARG-GVIDEEALVRALDSG 336 (656)
Q Consensus 306 l~~mK~gailINvaRg-~ivde~aL~~aL~~g 336 (656)
.+ .+... +|..+.| ..-+++.+.++.++.
T Consensus 91 ~~-~Gi~~-vVi~t~G~~~~~~~~l~~~A~~~ 120 (294)
T 2yv1_A 91 ID-AGIEL-IVVITEHIPVHDTMEFVNYAEDV 120 (294)
T ss_dssp HH-TTCSE-EEECCSCCCHHHHHHHHHHHHHH
T ss_pred HH-CCCCE-EEEECCCCCHHHHHHHHHHHHHc
Confidence 22 22222 4444433 222455676666653
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.41 E-value=0.26 Score=49.74 Aligned_cols=64 Identities=23% Similarity=0.365 Sum_probs=47.2
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCC----hhHH------HHcCCeec--------CHHHHhccCCEEEE
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAP----ADKA------RAVGVELV--------SFDQALATADFISL 289 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~----~~~a------~~~g~~~~--------~l~ell~~aDvV~l 289 (656)
.++|.|.|. |.||+.+++.|...|++|++.++... .+.+ ...|++.+ ++.++++.+|+|+.
T Consensus 4 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~ 83 (308)
T 1qyc_A 4 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVIS 83 (308)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEE
T ss_pred CCEEEEEcCCcHHHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEE
Confidence 478999996 99999999999999999999987642 1111 12355432 25567888999988
Q ss_pred ccC
Q 006212 290 HMP 292 (656)
Q Consensus 290 ~~P 292 (656)
+++
T Consensus 84 ~a~ 86 (308)
T 1qyc_A 84 TVG 86 (308)
T ss_dssp CCC
T ss_pred CCc
Confidence 776
|
| >1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A* | Back alignment and structure |
|---|
Probab=91.40 E-value=0.2 Score=52.79 Aligned_cols=30 Identities=27% Similarity=0.558 Sum_probs=25.4
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEECC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAHDP 260 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d~ 260 (656)
+|||+|+|+||+.+.+.+... .++|.+.+-
T Consensus 3 kVgI~G~G~iG~~l~R~l~~~~~veiv~i~~ 33 (330)
T 1gad_O 3 KVGINGFGRIGRIVFRAAQKRSDIEIVAIND 33 (330)
T ss_dssp EEEEECCSHHHHHHHHHHHTCSSEEEEEEEC
T ss_pred EEEEECcCHHHHHHHHHHHcCCCeEEEEEcC
Confidence 799999999999999998865 578877643
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=91.37 E-value=0.12 Score=52.00 Aligned_cols=62 Identities=19% Similarity=0.315 Sum_probs=45.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec--------CHHHHhcc-CCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV--------SFDQALAT-ADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~--------~l~ell~~-aDvV~l~~P 292 (656)
.+++|.|.|.|.||+.+++.|...|++|++.++..... ..++.++ +++++++. +|+|+-+..
T Consensus 2 ~~~~ilVtGaG~iG~~l~~~L~~~g~~V~~~~r~~~~~---~~~~~~~~~Dl~d~~~~~~~~~~~~d~vih~a~ 72 (286)
T 3gpi_A 2 SLSKILIAGCGDLGLELARRLTAQGHEVTGLRRSAQPM---PAGVQTLIADVTRPDTLASIVHLRPEILVYCVA 72 (286)
T ss_dssp CCCCEEEECCSHHHHHHHHHHHHTTCCEEEEECTTSCC---CTTCCEEECCTTCGGGCTTGGGGCCSEEEECHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcccc---ccCCceEEccCCChHHHHHhhcCCCCEEEEeCC
Confidence 46789999999999999999999999999998764221 1223221 23455666 999877664
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.35 E-value=0.3 Score=49.28 Aligned_cols=64 Identities=27% Similarity=0.237 Sum_probs=47.9
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCC-CEEEEECCCCChh---HHHHcCCeec--------CHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLG-MNVIAHDPYAPAD---KARAVGVELV--------SFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G-~~Vi~~d~~~~~~---~a~~~g~~~~--------~l~ell~~aDvV~l~~P 292 (656)
.|+|.|.|. |.||+.+++.|...| ++|.+.++..... .....+++.+ ++.++++.+|+|+.+.+
T Consensus 5 ~~~ilVtGatG~iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 5 KKLVVVFGGTGAQGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCEEEEECCCchHHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 578999997 999999999999878 9999988765321 1223455432 25567889999988775
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=91.34 E-value=0.24 Score=51.97 Aligned_cols=105 Identities=17% Similarity=0.259 Sum_probs=61.7
Q ss_pred CEEEEEecChhHHHHHHHHhc-------CCCEEEE-ECCCCC-------hh----HHHHcC-Ce--ecCHHHHhc--cCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKG-------LGMNVIA-HDPYAP-------AD----KARAVG-VE--LVSFDQALA--TAD 285 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~-------~G~~Vi~-~d~~~~-------~~----~a~~~g-~~--~~~l~ell~--~aD 285 (656)
-+|||+|+|.||+.+++.+.. .+++|.+ +|+... .. ...+.| +. ..+.++++. +.|
T Consensus 5 irVgIiG~G~VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iD 84 (325)
T 3ing_A 5 IRIILMGTGNVGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAAD 84 (325)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCS
T ss_pred EEEEEEcCcHHHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCC
Confidence 369999999999999999875 3567666 455421 11 122234 21 126677774 589
Q ss_pred EEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchh-cHHHHHHhHhc
Q 006212 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVI-DEEALVRALDS 335 (656)
Q Consensus 286 vV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~iv-de~aL~~aL~~ 335 (656)
+|+.|+|... ..+---+.....|+.|.-+|-+-.+.+. ..+.|.++.++
T Consensus 85 vVVe~T~~~~-~~~pa~~~~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~ 134 (325)
T 3ing_A 85 LLVDCTPASR-DGVREYSLYRMAFESGMNVVTANKSGLANKWHDIMDSANQ 134 (325)
T ss_dssp EEEECCCCCS-SSHHHHHHHHHHHHTTCEEEECCCHHHHHHHHHHHHHHHH
T ss_pred EEEECCCCcc-ccchHHHHHHHHHHCCCeEEEcCchhHHHHHHHHHHHHHH
Confidence 9999999431 1100012234446777777766555443 34556555444
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=91.30 E-value=0.18 Score=52.34 Aligned_cols=44 Identities=27% Similarity=0.388 Sum_probs=35.3
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVG 271 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g 271 (656)
.|+++.|.|. |.||..+++.++..|.+|++.++.. ..+.+++.|
T Consensus 145 ~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~~~g 190 (333)
T 1wly_A 145 PGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETARKLG 190 (333)
T ss_dssp TTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHT
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC
Confidence 4889999995 9999999999999999999998764 233344444
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.37 Score=50.44 Aligned_cols=64 Identities=16% Similarity=-0.018 Sum_probs=46.1
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCC-------EEEEECCC----CC-h-hHH--HHcC---C----e-ecCHHHHhccCC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGM-------NVIAHDPY----AP-A-DKA--RAVG---V----E-LVSFDQALATAD 285 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~-------~Vi~~d~~----~~-~-~~a--~~~g---~----~-~~~l~ell~~aD 285 (656)
++|.|+|. |.+|+.++..|...|+ +|..+|.. .. . ..+ ...+ + . ..++.+.++.||
T Consensus 6 ~KI~ViGaaG~VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD 85 (329)
T 1b8p_A 6 MRVAVTGAAGQICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDAD 85 (329)
T ss_dssp EEEEESSTTSHHHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCS
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCC
Confidence 58999997 9999999999987775 89999986 21 1 001 1111 1 1 136889999999
Q ss_pred EEEEccCC
Q 006212 286 FISLHMPL 293 (656)
Q Consensus 286 vV~l~~Pl 293 (656)
+|+++...
T Consensus 86 ~Vi~~ag~ 93 (329)
T 1b8p_A 86 VALLVGAR 93 (329)
T ss_dssp EEEECCCC
T ss_pred EEEEeCCC
Confidence 99988763
|
| >1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.12 Score=54.01 Aligned_cols=45 Identities=31% Similarity=0.465 Sum_probs=36.2
Q ss_pred CCCEEEEEecC-hhHHHHHHHHhcC-CCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFG-KVGSEVARRAKGL-GMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG-~IG~~vA~~lk~~-G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|+++.|+|.| .||..+++.++.. |.+|++.|++. ..+.+++.|.
T Consensus 170 ~g~~vlV~Gagg~iG~~~~~~a~~~~Ga~Vi~~~~~~~~~~~~~~~g~ 217 (347)
T 1jvb_A 170 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 217 (347)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC
Confidence 47899999999 9999999999988 99999998764 2334444443
|
| >2ph5_A Homospermidine synthase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: NAD; 2.50A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.09 E-value=0.21 Score=55.15 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=28.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhc-CCC---EEEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKG-LGM---NVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~-~G~---~Vi~~d~~~ 262 (656)
.+.+ +|.|||+|.||+.+|+.+.. .++ +|+..|+..
T Consensus 11 ~~~~-rVlIIGaGgVG~~va~lla~~~dv~~~~I~vaD~~~ 50 (480)
T 2ph5_A 11 LFKN-RFVILGFGCVGQALMPLIFEKFDIKPSQVTIIAAEG 50 (480)
T ss_dssp CCCS-CEEEECCSHHHHHHHHHHHHHBCCCGGGEEEEESSC
T ss_pred cCCC-CEEEECcCHHHHHHHHHHHhCCCCceeEEEEeccch
Confidence 3444 58899999999999998864 565 688888764
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=90.95 E-value=0.36 Score=51.99 Aligned_cols=66 Identities=15% Similarity=0.067 Sum_probs=51.8
Q ss_pred ccCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccC
Q 006212 226 SLVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMP 292 (656)
Q Consensus 226 ~l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~P 292 (656)
.+.|++|+|+|+-- =...+++.|+..|.+|.+|||...... ...+..++ +++++++.||+|+++..
T Consensus 306 ~~~~~~v~vlGlafK~~~~d~R~sp~~~i~~~L~~~g~~v~~~DP~~~~~~-~~~~~~~~~~~~~~~~~~d~~v~~~~ 382 (402)
T 1dlj_A 306 ESPVKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNRY 382 (402)
T ss_dssp CCSSCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSSC
T ss_pred CCCCCEEEEEeeeccCCCcccccChHHHHHHHHHHCCCEEEEECCCCChHH-HHcCCeecCCHHHHHhCCcEEEEecC
Confidence 68999999999853 466799999999999999999863221 11344444 68999999999999776
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.23 Score=50.11 Aligned_cols=65 Identities=17% Similarity=0.256 Sum_probs=46.9
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC----Ch-hHH------HHcCCeec--------CHHHHhccCCEEE
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA----PA-DKA------RAVGVELV--------SFDQALATADFIS 288 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~----~~-~~a------~~~g~~~~--------~l~ell~~aDvV~ 288 (656)
+++|.|.|. |.||+.+++.|...|++|++.++.. .. +.+ ...+++.+ ++.++++.+|+|+
T Consensus 2 ~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi 81 (307)
T 2gas_A 2 ENKILILGPTGAIGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVI 81 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEE
T ss_pred CcEEEEECCCchHHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEE
Confidence 578999996 9999999999998899999987764 11 111 23455432 2556788899988
Q ss_pred EccCC
Q 006212 289 LHMPL 293 (656)
Q Consensus 289 l~~Pl 293 (656)
.+++.
T Consensus 82 ~~a~~ 86 (307)
T 2gas_A 82 CAAGR 86 (307)
T ss_dssp ECSSS
T ss_pred ECCcc
Confidence 87763
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=90.87 E-value=0.19 Score=54.92 Aligned_cols=64 Identities=20% Similarity=0.192 Sum_probs=49.2
Q ss_pred cCCCEEEEEecCh----------hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGFGK----------VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGlG~----------IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~P 292 (656)
..|++|+|+|+-- =...++++|++.|.+|.+|||...... -.+..++ ++++.+++||+|++.-.
T Consensus 330 ~~~~~v~vlGlafK~~tdD~R~Sp~~~i~~~L~~~G~~V~~~DP~~~~~~--~~~~~~~~~~~~~~~~aD~iv~~~~ 404 (432)
T 3pid_A 330 RKPKVVGVYRLIMKSGSDNFRASSIQGIMKRIKAKGIPVIIYEPVMQEDE--FFNSRVVRDLNAFKQEADVIISNRM 404 (432)
T ss_dssp TCCSSEEEECC-----------CHHHHHHHHHHHTTCCEEEECTTCCSSE--ETTEEECCCHHHHHHHCSEEECSSC
T ss_pred hcCCEEEEEeeEeCCCCcchhcChHHHHHHHHHhcCCEEEEECCCCChhh--cCCceEECCHHHHHhcCCEEEECCC
Confidence 3589999999853 357799999999999999999975321 1344443 89999999999987665
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=90.81 E-value=0.36 Score=50.62 Aligned_cols=87 Identities=14% Similarity=0.122 Sum_probs=55.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCCe---ec-------CHHHHh------ccCCEEEE
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGVE---LV-------SFDQAL------ATADFISL 289 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~~---~~-------~l~ell------~~aDvV~l 289 (656)
.|++|.|+|.|.+|...++.++.+|.+ |++.|... ..+.+++++-. +. ++.+.+ ...|+|+-
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~v~~~t~g~g~Dvvid 258 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAKEICPEVVTHKVERLSAEESAKKIVESFGGIEPAVALE 258 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHHHCTTCEEEECCSCCHHHHHHHHHHHTSSCCCSEEEE
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhchhcccccccccchHHHHHHHHHHhCCCCCCEEEE
Confidence 488999999999999999999999997 89888764 33445544211 10 111111 14677777
Q ss_pred ccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 290 HMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 290 ~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
++.... .-...+..++++..++.++
T Consensus 259 ~~g~~~-----~~~~~~~~l~~~G~iv~~G 283 (363)
T 3m6i_A 259 CTGVES-----SIAAAIWAVKFGGKVFVIG 283 (363)
T ss_dssp CSCCHH-----HHHHHHHHSCTTCEEEECC
T ss_pred CCCChH-----HHHHHHHHhcCCCEEEEEc
Confidence 665211 1133455677777777765
|
| >3k5i_A Phosphoribosyl-aminoimidazole carboxylase; purine biosynthesis, ATP-grAsp, lyase; HET: NHE ADP AIR; 2.00A {Aspergillus clavatus} PDB: 3k5h_A* | Back alignment and structure |
|---|
Probab=90.68 E-value=0.35 Score=51.97 Aligned_cols=67 Identities=24% Similarity=0.359 Sum_probs=45.2
Q ss_pred ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHc-CC---eecC---HHHHhccCCEEEE
Q 006212 222 YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAV-GV---ELVS---FDQALATADFISL 289 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~-g~---~~~~---l~ell~~aDvV~l 289 (656)
|++.-+.+++|+|+|-|..|+.+++.++.+|++|+++| +. +.....+. .. .+.+ +.++++++|+|+.
T Consensus 17 ~~~~mm~~~~I~ilGgG~lg~~l~~aa~~lG~~v~~~d-~~~~p~~~~ad~~~~~~~~~~d~~~l~~~a~~~d~i~~ 92 (403)
T 3k5i_A 17 FQGHMWNSRKVGVLGGGQLGRMLVESANRLNIQVNVLD-ADNSPAKQISAHDGHVTGSFKEREAVRQLAKTCDVVTA 92 (403)
T ss_dssp ----CCSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEE-STTCTTGGGCCSSCCEESCTTCHHHHHHHHTTCSEEEE
T ss_pred EeccCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEE-CCCCcHHHhccccceeecCCCCHHHHHHHHHhCCEEEE
Confidence 34555679999999999999999999999999999998 53 11111110 11 1112 5667888998865
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.34 Score=49.36 Aligned_cols=64 Identities=13% Similarity=0.256 Sum_probs=47.0
Q ss_pred CCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCC-h-hH---HHHcCCeec--------CHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP-A-DK---ARAVGVELV--------SFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-~~---a~~~g~~~~--------~l~ell~~aDvV~l~~P 292 (656)
.++|.|.| .|.||+.+++.|...|++|.+.++... . .. ....|++.+ ++.++++.+|+|+.+++
T Consensus 11 ~~~ilVtGatG~iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~ 88 (318)
T 2r6j_A 11 KSKILIFGGTGYIGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALA 88 (318)
T ss_dssp CCCEEEETTTSTTHHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred CCeEEEECCCchHHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 36899999 599999999999988999999887653 1 11 123455432 25567888999987776
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=90.67 E-value=0.16 Score=50.77 Aligned_cols=62 Identities=18% Similarity=0.230 Sum_probs=43.9
Q ss_pred EEEEEec-ChhHHHHHHHHhcC--CCEEEEECCCCCh-hHHHHcCCeec--------CHHHHhccCCEEEEccC
Q 006212 231 TLAVMGF-GKVGSEVARRAKGL--GMNVIAHDPYAPA-DKARAVGVELV--------SFDQALATADFISLHMP 292 (656)
Q Consensus 231 tvGIIGl-G~IG~~vA~~lk~~--G~~Vi~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aDvV~l~~P 292 (656)
+|.|.|. |.||+.+++.|... |++|++.++.... ......++..+ +++++++.+|+|+.+..
T Consensus 1 ~ilVtGatG~iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 1 MIAITGATGQLGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp CEEEESTTSHHHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred CEEEEcCCchHHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 4678886 99999999999987 9999998876522 22223344321 25667889999987665
|
| >3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A* | Back alignment and structure |
|---|
Probab=90.66 E-value=0.23 Score=52.57 Aligned_cols=28 Identities=32% Similarity=0.567 Sum_probs=24.2
Q ss_pred EEEEEecChhHHHHHHHHhcC---CCEEEEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGL---GMNVIAH 258 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~---G~~Vi~~ 258 (656)
+|||+|+|+||+.+.+.|... +++|.+.
T Consensus 4 kVgI~G~G~IGr~v~r~l~~~~~~~~evvaI 34 (339)
T 3b1j_A 4 RVAINGFGRIGRNFLRCWFGRQNTDLEVVAI 34 (339)
T ss_dssp EEEEECCSHHHHHHHHHHHHCSCCSEEEEEE
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 799999999999999998765 4888765
|
| >3ruf_A WBGU; rossmann fold, UDP-hexose 4-epimerase, isomerase; HET: NAD UDP; 2.00A {Plesiomonas shigelloides} SCOP: c.2.1.2 PDB: 3ru9_A* 3rud_A* 3rue_A* 3rua_A* 3ruh_A* 3ruc_A* 3ru7_A* 3lu1_A* | Back alignment and structure |
|---|
Probab=90.65 E-value=0.39 Score=49.49 Aligned_cols=67 Identities=18% Similarity=0.251 Sum_probs=47.6
Q ss_pred ccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCC--hhHHH---H-------cCCeec--------CHHHHhccC
Q 006212 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP--ADKAR---A-------VGVELV--------SFDQALATA 284 (656)
Q Consensus 226 ~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~--~~~a~---~-------~g~~~~--------~l~ell~~a 284 (656)
.+.+++|.|.| .|.||+.+++.|...|.+|++.++... ..... . .++.++ +++++++.+
T Consensus 22 ~~~~~~vlVtGatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~ 101 (351)
T 3ruf_A 22 IFSPKTWLITGVAGFIGSNLLEKLLKLNQVVIGLDNFSTGHQYNLDEVKTLVSTEQWSRFCFIEGDIRDLTTCEQVMKGV 101 (351)
T ss_dssp HHSCCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECCSSCCHHHHHHHHHTSCHHHHTTEEEEECCTTCHHHHHHHTTTC
T ss_pred CCCCCeEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhcCC
Confidence 35689999999 599999999999999999999987642 11111 1 233221 255677788
Q ss_pred CEEEEccC
Q 006212 285 DFISLHMP 292 (656)
Q Consensus 285 DvV~l~~P 292 (656)
|+|+-+..
T Consensus 102 d~Vih~A~ 109 (351)
T 3ruf_A 102 DHVLHQAA 109 (351)
T ss_dssp SEEEECCC
T ss_pred CEEEECCc
Confidence 88876664
|
| >1p3d_A UDP-N-acetylmuramate--alanine ligase; alpha/beta protein; HET: UMA ANP; 1.70A {Haemophilus influenzae} SCOP: c.5.1.1 c.59.1.1 c.72.2.1 PDB: 1gqq_A* 1p31_A* 1gqy_A* | Back alignment and structure |
|---|
Probab=90.64 E-value=0.23 Score=54.53 Aligned_cols=61 Identities=13% Similarity=0.241 Sum_probs=47.4
Q ss_pred CCEEEEEecChhHHH-HHHHHhcCCCEEEEECCCCCh--hHHHHcCCeec---CHHHHhccCCEEEEc
Q 006212 229 GKTLAVMGFGKVGSE-VARRAKGLGMNVIAHDPYAPA--DKARAVGVELV---SFDQALATADFISLH 290 (656)
Q Consensus 229 gktvGIIGlG~IG~~-vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g~~~~---~l~ell~~aDvV~l~ 290 (656)
-|+|.|||+|.+|.+ +|+.|+..|++|.++|..... +...+.|+.+. +. +.++.+|+|++.
T Consensus 18 ~~~i~viG~G~sG~s~~A~~l~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~g~~~-~~~~~a~~vv~s 84 (475)
T 1p3d_A 18 VQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAE-EHIEGASVVVVS 84 (475)
T ss_dssp CCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCG-GGGTTCSEEEEC
T ss_pred CCEEEEEeecHHHHHHHHHHHHhCCCEEEEECCCCCHHHHHHHhCCCEEECCCCH-HHcCCCCEEEEC
Confidence 478999999999998 999999999999999986533 23455677653 23 345789999885
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.57 E-value=0.2 Score=52.69 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=36.3
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|+++.|.|. |.||..+++.++..|++|++.++.. ..+.+++.|.
T Consensus 170 ~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~~ga 216 (351)
T 1yb5_A 170 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 216 (351)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHcCC
Confidence 4889999998 9999999999999999999998764 2334444443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=90.56 E-value=0.28 Score=53.96 Aligned_cols=65 Identities=17% Similarity=0.265 Sum_probs=48.8
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhH-HHHcCCeec-----C---HHHH-hccCCEEEEccCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADK-ARAVGVELV-----S---FDQA-LATADFISLHMPL 293 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~-a~~~g~~~~-----~---l~el-l~~aDvV~l~~Pl 293 (656)
.++|-|+|+|.+|+.+|+.|...|.+|.+.|.... .+. ...+++..+ + |+++ +++||+++.+++.
T Consensus 3 ~M~iiI~G~G~vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~ 78 (461)
T 4g65_A 3 AMKIIILGAGQVGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNT 78 (461)
T ss_dssp CEEEEEECCSHHHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSC
T ss_pred cCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCC
Confidence 45799999999999999999999999999998752 222 234565432 2 4443 7899999887773
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 656 | ||||
| d1ygya1 | 184 | c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase | 2e-43 | |
| d1gdha1 | 191 | c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp | 1e-41 | |
| d2naca1 | 188 | c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudom | 1e-39 | |
| d1sc6a1 | 188 | c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase | 2e-37 | |
| d1mx3a1 | 193 | c.2.1.4 (A:126-318) Transcription corepressor CtbP | 2e-33 | |
| d1j4aa1 | 197 | c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto | 7e-28 | |
| d1ygya2 | 130 | c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy | 8e-25 | |
| d1qp8a1 | 181 | c.2.1.4 (A:83-263) Putative formate dehydrogenase | 3e-24 | |
| d1gdha2 | 129 | c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog | 3e-23 | |
| d1mx3a2 | 133 | c.23.12.1 (A:27-125,A:319-352) Transcription corep | 3e-21 | |
| d1dxya1 | 199 | c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro | 9e-21 | |
| d1sc6a2 | 132 | c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate deh | 3e-20 | |
| d1dxya2 | 131 | c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa | 3e-18 | |
| d1j4aa2 | 134 | c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen | 4e-18 | |
| d1ygya4 | 135 | d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrog | 2e-17 | |
| d2naca2 | 186 | c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas | 3e-16 | |
| d1li4a1 | 163 | c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolas | 1e-13 | |
| d1ygya3 | 78 | d.58.18.1 (A:452-529) Phosphoglycerate dehydrogena | 1e-13 | |
| d1qp8a2 | 121 | c.23.12.1 (A:1-82,A:264-302) Putative formate dehy | 1e-12 | |
| d1sc6a3 | 84 | d.58.18.1 (A:327-410) Phosphoglycerate dehydrogena | 5e-12 | |
| d1v8ba1 | 163 | c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolas | 2e-08 | |
| d1pjqa1 | 113 | c.2.1.11 (A:1-113) Siroheme synthase CysG, domain | 3e-05 | |
| d1hwxa1 | 293 | c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow ( | 7e-05 | |
| d1v9la1 | 242 | c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrob | 1e-04 | |
| d1leha1 | 230 | c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillu | 3e-04 | |
| d1c1da1 | 201 | c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {R | 0.002 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 152 bits (384), Expect = 2e-43
Identities = 87/185 (47%), Positives = 116/185 (62%), Gaps = 1/185 (0%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
N +AAEH +ALL + +R + ADAS++ W RS + G + GKT+ V+G G++G VA
Sbjct: 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVA 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+R G V+A+DPY +A +G+EL+S D LA ADFIS+H+P P T+ + + E
Sbjct: 61 QRIAAFGAYVVAYDPYVSPARAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEA 120
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTV 365
AK K GV IVN ARGG++DE AL A+ G V A LDVF EP DS L + V V
Sbjct: 121 LAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDVFATEPC-TDSPLFELAQVVV 179
Query: 366 TPHLG 370
TPHLG
Sbjct: 180 TPHLG 184
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 147 bits (372), Expect = 1e-41
Identities = 63/191 (32%), Positives = 94/191 (49%), Gaps = 6/191 (3%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWL---RSKYVGVSLVGKTLAVMGFGKVGSE 243
TVA AE + LL AR + + I+ W + VG L KTL + GFG +G
Sbjct: 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQA 61
Query: 244 VARRAKGLGMNVIAHDPYAPADKARA--VGVELVSFDQALATADFISLHMPLNPTTSKIF 301
+A+RA+G M++ D + + A S D L+ + F SL+ P P T F
Sbjct: 62 LAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFF 121
Query: 302 NDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHE 361
N T + +G +VN ARG ++D E +V AL++G +A A DVF EP +
Sbjct: 122 NKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYAGFDVFAGEPN-INEGYYDLP 180
Query: 362 NVTVTPHLGAS 372
N + PH+G++
Sbjct: 181 NTFLFPHIGSA 191
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 141 bits (356), Expect = 1e-39
Identities = 51/187 (27%), Positives = 86/187 (45%), Gaps = 4/187 (2%)
Query: 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYV--GVSLVGKTLAVMGFGKVGSEVA 245
++ AEH + ++ S+ RN + + G W + V L + + G++G V
Sbjct: 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVL 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVG--VELVSFDQALATADFISLHMPLNPTTSKIFND 303
RR +++ D + + + + D ++L+ PL+P T + ND
Sbjct: 61 RRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND 120
Query: 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENV 363
ET K+G IVN ARG + D +A+ RAL+SG +A A DV+ +P KD
Sbjct: 121 ETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAGDVWFPQPAPKDHPWRTMPYN 180
Query: 364 TVTPHLG 370
+TPH+
Sbjct: 181 GMTPHIS 187
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 188 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 135 bits (340), Expect = 2e-37
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 6/189 (3%)
Query: 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVA 245
NT + AE I L + R V +A+A G + GK L ++G+G +G+++
Sbjct: 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLG 60
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
A+ LGM V +D A V+ L +D +SLH+P NP+T + +
Sbjct: 61 ILAESLGMYVYFYDIENKLPLGNATQVQ--HLSDLLNMSDVVSLHVPENPSTKNMMGAKE 118
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----SKLVQHE 361
+ MK G ++N +RG V+D AL AL S +A AA+DVF EP S L + +
Sbjct: 119 ISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDVFPTEPATNSDPFTSPLAEFD 178
Query: 362 NVTVTPHLG 370
NV +TPH+G
Sbjct: 179 NVLLTPHIG 187
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 124 bits (312), Expect = 2e-33
Identities = 61/187 (32%), Positives = 98/187 (52%), Gaps = 9/187 (4%)
Query: 191 AEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSE 243
A+ + + ++ R + +++ G ++S + G+TL ++G G+VG
Sbjct: 4 ADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQA 63
Query: 244 VARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFN 302
VA RAK G NV+ +DPY RA+G++ + + L +D ++LH LN + N
Sbjct: 64 VALRAKAFGFNVLFYDPYLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIN 123
Query: 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEP-PAKDSKLVQHE 361
D T +M++G +VN ARGG++DE+AL +AL G + AALDV EP L
Sbjct: 124 DFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDVHESEPFSFSQGPLKDAP 183
Query: 362 NVTVTPH 368
N+ TPH
Sbjct: 184 NLICTPH 190
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 109 bits (271), Expect = 7e-28
Identities = 60/193 (31%), Positives = 91/193 (47%), Gaps = 14/193 (7%)
Query: 189 AAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRA 248
A AEH A + R D + + +G + + + V+G G +G +
Sbjct: 3 AIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIM 62
Query: 249 KGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAK 308
+G G VI +D + + G + S D AD ISLH+P P + NDE+ AK
Sbjct: 63 EGFGAKVITYDIF-RNPELEKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAK 121
Query: 309 MKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPP-------------AKDS 355
MK+ V IVNV+RG ++D +A++R LDSG + A+DV+ E A+ +
Sbjct: 122 MKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYEGEVGIFNEDWEGKEFPDARLA 181
Query: 356 KLVQHENVTVTPH 368
L+ NV VTP
Sbjct: 182 DLIARPNVLVTPK 194
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 97.9 bits (243), Expect = 8e-25
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 1/129 (0%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA 149
P +L+++KL + +A L V + + L + + DAL+VRS T V V A
Sbjct: 2 LPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAA 61
Query: 150 ANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQAD 209
A KLK+V RAGVG+DNVD+ AAT G LVVNAP + + A A+ + + ++ A
Sbjct: 62 AP-KLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAG 120
Query: 210 ASIKAGKWL 218
+ +
Sbjct: 121 EFVPDAVNV 129
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 98.3 bits (243), Expect = 3e-24
Identities = 50/187 (26%), Positives = 80/187 (42%), Gaps = 8/187 (4%)
Query: 185 ANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEV 244
A+ VA E +ALL + + + Q +K G + R + + G+ +AV+G G++G+ V
Sbjct: 1 ADAVA--EFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLI-QGEKVAVLGLGEIGTRV 57
Query: 245 ARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304
+ LG V R S ++AL A +PLN T + +
Sbjct: 58 GKILAALGAQVRGFSRTPKEGPWRFT----NSLEEALREARAAVCALPLNKHTRGLVKYQ 113
Query: 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT-EEPPAKDSKLVQHENV 363
A M + VNV R V+D + ++R L A DV+ AKD++ NV
Sbjct: 114 HLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVWWGRNDFAKDAEFFSLPNV 173
Query: 364 TVTPHLG 370
TP +
Sbjct: 174 VATPWVA 180
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Score = 93.5 bits (232), Expect = 3e-23
Identities = 32/125 (25%), Positives = 51/125 (40%), Gaps = 3/125 (2%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLYD---LSPEALCEKISQCDALIVRSGTKVTRSV 146
K IL++ L EA +A R +V D ++ + + E DAL++ K + V
Sbjct: 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEV 60
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
+ +K + +G D++DL A G V NAP T A + +
Sbjct: 61 IDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFG 120
Query: 207 QADAS 211
AD S
Sbjct: 121 GADMS 125
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Score = 88.1 bits (218), Expect = 3e-21
Identities = 27/129 (20%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Query: 91 PTILVSEKL-GEAGLAILRSFGNVECLYDLSPEALCEKI-SQCDALIVRSGTKVTRSVFE 148
P + + + + IL+ V S + + EK+ ++ ++ +TR E
Sbjct: 2 PLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLE 61
Query: 149 AANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQA 208
L+++ R G G DN+D+++A + G V N P A+ + + I + AR + +A
Sbjct: 62 KFK-ALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRA 119
Query: 209 DASIKAGKW 217
Sbjct: 120 ITGRIPDSL 128
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 88.7 bits (218), Expect = 9e-21
Identities = 55/198 (27%), Positives = 90/198 (45%), Gaps = 16/198 (8%)
Query: 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVA 245
A AE + + RN+ + A ++AG + ++ ++G L +T+ VMG G +G
Sbjct: 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAI 61
Query: 246 RRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDET 305
+ KG G VIA+DPY VS + +D I LH+P + I N+
Sbjct: 62 KLFKGFGAKVIAYDPYPMKGDHPDFDY--VSLEDLFKQSDVIDLHVPGIEQNTHIINEAA 119
Query: 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKD----------- 354
F MK G ++N AR +ID +A++ L SG +A +D + E
Sbjct: 120 FNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYETEDLLNLAKHGSFKDP 179
Query: 355 --SKLVQHENVTVTPHLG 370
+L+ NV ++PH+
Sbjct: 180 LWDELLGMPNVVLSPHIA 197
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} Length = 132 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Score = 85.1 bits (210), Expect = 3e-20
Identities = 37/131 (28%), Positives = 56/131 (42%), Gaps = 6/131 (4%)
Query: 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSV 146
K L+ E + + L LR+ G + L E L E I + +RS T +T V
Sbjct: 4 KIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDV 63
Query: 147 FEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVS 206
A KL +G +G + VDL AA + G V NAP ++T A E+ +A + +
Sbjct: 64 INA-AEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIK 120
Query: 207 QADASIKAGKW 217
+D
Sbjct: 121 YSDNGSTLSAV 131
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Score = 79.3 bits (195), Expect = 3e-18
Identities = 21/104 (20%), Positives = 37/104 (35%), Gaps = 1/104 (0%)
Query: 113 VECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVGIDNVDLQA 171
+E + E E D + T VFE +K + VG DN+D+ A
Sbjct: 27 LEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTDNIDMTA 86
Query: 172 ATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAG 215
++G + N P A L + +++ + S +
Sbjct: 87 MKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTEVT 130
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Score = 78.8 bits (194), Expect = 4e-18
Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 6/114 (5%)
Query: 107 LRSFGNVECLY--DLSPEALCEKISQCDALIVRSGTKVTRSVFEA-ANGKLKVVGRAGVG 163
+ +VE Y L D ++V +A A+ + + VG
Sbjct: 20 EDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVG 79
Query: 164 IDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217
+DN+D+ A E G + N P + H + + A + + K +
Sbjct: 80 VDNIDMAKAKELGFQITNVP---VYSYTTHAVRNMVVKAFDNNLELVEGKEAET 130
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} Length = 135 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 76.9 bits (189), Expect = 2e-17
Identities = 28/148 (18%), Positives = 57/148 (38%), Gaps = 20/148 (13%)
Query: 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGII 468
V E+AP++ L +KLG LA L S+ + R + + +LR +G+
Sbjct: 3 VVNEEVAPWLDLVRKLGVLAGVLS--DELPVSLSVQVRG--ELAAEEVEVLRLSALRGLF 58
Query: 469 EPISASFINLVNADFTAKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSEN 528
+ + VNA A ++G+ + A SP + V+ ++
Sbjct: 59 SAVIEDAVTFVNAPALAAERGVTAEICK--ASESPNHR-SVVDVRAVG---------ADG 106
Query: 529 GEISIEGKVKFG---IPHLTRVGSFGVD 553
+++ G + +G + ++ D
Sbjct: 107 SVVTVSGTL-YGPQLSQKIVQINGRHFD 133
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Score = 75.0 bits (184), Expect = 3e-16
Identities = 31/161 (19%), Positives = 52/161 (32%), Gaps = 18/161 (11%)
Query: 74 HVSKFQDD---LNVQAVTPKPTILVSEKLGEAGLA-ILRSFGN-VECLYDLSPEA--LCE 126
+ + +A+ P L+ GE GL L S G+ + D
Sbjct: 26 KIDHYPGGQTLPTPKAIDFTPGQLLGSVSGELGLRKYLESNGHTLVVTSDKDGPDSVFER 85
Query: 127 KISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPI 184
++ D +I + +T A LK+ AG+G D+VDLQ+A + V
Sbjct: 86 ELVDADVVISQPFWPAYLTPERIAKAK-NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTY 144
Query: 185 ANTVAAAEH--------GIALLASMARNVSQADASIKAGKW 217
N+ I R + ++ G
Sbjct: 145 CNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL 185
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.9 bits (163), Expect = 1e-13
Identities = 26/127 (20%), Positives = 41/127 (32%), Gaps = 4/127 (3%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALAT 283
V + GK V G+G VG A+ +G G VI + A+ V +
Sbjct: 19 DVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEV---TTMDE 75
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNV-ARGGVIDEEALVRALDSGVVAQAA 342
A I F +MK + N+ ID + L V +
Sbjct: 76 ACQEGNIFVTTTGCIDIILGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQ 135
Query: 343 LDVFTEE 349
+D + +
Sbjct: 136 VDRYRLK 142
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 78 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 64.1 bits (156), Expect = 1e-13
Identities = 16/77 (20%), Positives = 34/77 (44%)
Query: 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLK 616
+G ++ VD+PG +GK+G +LG VN+ + + + +D++ D
Sbjct: 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRT 61
Query: 617 EIGKVPAIEEYTLLHVS 633
I + ++ +S
Sbjct: 62 AIAAAVDAYKLEVVDLS 78
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 62.7 bits (152), Expect = 1e-12
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 41/160 (25%)
Query: 93 ILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANG 152
+ V+ +L LR + + + +A +V +++T
Sbjct: 3 LYVNFELPPEAEEELRKYFKIVR---------GGDLGNVEAALV---SRITAEELAKMP- 49
Query: 153 KLKVVGRAGVGIDNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212
+LK + G+D++ ++ V +N ++ R
Sbjct: 50 RLKFIQVVTAGLDHLPWESIPP-HVTVAGNAGSNGYGNERVWRQMVMEAVR--------- 99
Query: 213 KAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLG 252
L G +A+R +G
Sbjct: 100 ------------------NLITYATGGRPRNIAKREDYIG 121
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Length = 84 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Score = 59.7 bits (145), Expect = 5e-12
Identities = 14/74 (18%), Positives = 35/74 (47%)
Query: 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKE 617
G ++ ++PG++ + I E VN+ + + + + ++ I DE+ + +L+
Sbjct: 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQA 70
Query: 618 IGKVPAIEEYTLLH 631
+ +P LL+
Sbjct: 71 MKAIPGTIRARLLY 84
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} Length = 163 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Score = 51.8 bits (124), Expect = 2e-08
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 8/111 (7%)
Query: 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALA 282
+ GK + + G+G VG A KGLG V + A +A G +V+ D+ +
Sbjct: 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVD 77
Query: 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRAL 333
DF + E KMK + N+ D+E V L
Sbjct: 78 KGDFFITC----TGNVDVIKLEHLLKMKNNAVVGNIGHF---DDEIQVNEL 121
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} Length = 113 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Score = 41.6 bits (97), Expect = 3e-05
Identities = 15/96 (15%), Positives = 24/96 (25%), Gaps = 1/96 (1%)
Query: 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALAT 283
L + ++G G V AR G + + P A L +
Sbjct: 8 CQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDE 67
Query: 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319
S + + T N + NV
Sbjct: 68 TLLDSCWLAIAATDDDTVNQRVSDAAESRRIFCNVV 103
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.8 bits (100), Expect = 7e-05
Identities = 13/52 (25%), Positives = 19/52 (36%)
Query: 208 ADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD 259
+ I+ ++ + KT AV GFG VG R G +A
Sbjct: 15 IENFIENASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVG 66
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Score = 41.7 bits (97), Expect = 1e-04
Identities = 28/148 (18%), Positives = 46/148 (31%), Gaps = 6/148 (4%)
Query: 221 KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQA 280
K + + GKT+A+ G G VG A + +G VIA + +
Sbjct: 23 KKLWGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNK 82
Query: 281 LATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340
T + + N + K+ + + A VI + VV
Sbjct: 83 GLTGPALVELFTTKDNAEFVKNPDAIFKLDVDIFVPA-AIENVIRGDNAGLVKARLVVEG 141
Query: 341 AALDVFTEEPPAKDSKLVQHENVTVTPH 368
A P A+ ++ V V P
Sbjct: 142 ANGPT---TPEAER--ILYERGVVVVPD 164
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 10/48 (20%), Positives = 19/48 (39%)
Query: 217 WLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA 264
+ + SL G ++V G G V + ++ G ++ D A
Sbjct: 27 AAKEAFGSDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAA 74
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Score = 37.4 bits (86), Expect = 0.002
Identities = 22/103 (21%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATAD 285
SL G T+ V G G VG +A A G ++ A AV + + +
Sbjct: 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLL-VADTDTERVAHAVALGHTAVALEDVLST 82
Query: 286 FISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEA 328
+ P + E + V + A + DE A
Sbjct: 83 PCDVFAPCAM--GGVITTEVARTLDCSV-VAGAANNVIADEAA 122
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 656 | |||
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 100.0 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 100.0 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 100.0 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 100.0 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 100.0 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 100.0 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 100.0 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 100.0 | |
| d1ygya2 | 130 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 99.95 | |
| d1ygya4 | 135 | D-3-phosphoglycerate dehydrogenase SerA {Mycobacte | 99.93 | |
| d1sc6a2 | 132 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 99.89 | |
| d1gdha2 | 129 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 99.88 | |
| d1qp8a2 | 121 | Putative formate dehydrogenase {Archaeon Pyrobacul | 99.83 | |
| d1dxya2 | 131 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 99.83 | |
| d1mx3a2 | 133 | Transcription corepressor CtbP {Human (Homo sapien | 99.82 | |
| d2naca2 | 186 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 99.79 | |
| d1j4aa2 | 134 | D-lactate dehydrogenase {Lactobacillus helveticus | 99.74 | |
| d1ygya3 | 78 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.62 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 99.6 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.48 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.48 | |
| d1sc6a3 | 84 | Phosphoglycerate dehydrogenase, regulatory (C-term | 99.35 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 99.33 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.31 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.19 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 98.97 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 98.86 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 98.83 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 98.82 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 98.68 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 98.58 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 98.5 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 98.45 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 98.39 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 98.37 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 98.26 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 98.24 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 98.22 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 98.22 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.15 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 98.12 | |
| d2iafa1 | 145 | L-serine dehydratase SdhL, N-terminal domain {Legi | 98.02 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 98.01 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 97.92 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 97.76 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.72 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 97.71 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 97.68 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 97.67 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 97.57 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.55 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 97.53 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 97.53 | |
| d2pc6a2 | 77 | Acetolactate synthase small subunit, IlvH {Nitroso | 97.49 | |
| d2f1fa1 | 76 | Acetolactate synthase small subunit, IlvH {Escheri | 97.49 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 97.49 | |
| d2fgca2 | 78 | Acetolactate synthase small subunit, IlvH {Thermot | 97.46 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 97.46 | |
| d1y7pa2 | 77 | Hypothetical protein AF1403, N-terminal domain {Ar | 97.38 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 97.15 | |
| d2f06a1 | 71 | Hypothetical protein BT0572 {Bacteroides thetaiota | 97.04 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 97.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.97 | |
| d1bgva1 | 255 | Glutamate dehydrogenase {Clostridium symbiosum [Ta | 96.97 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 96.93 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 96.92 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.87 | |
| d1gtma1 | 239 | Glutamate dehydrogenase {Archaeon Pyrococcus furio | 96.87 | |
| d2f06a2 | 70 | Hypothetical protein BT0572 {Bacteroides thetaiota | 96.86 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 96.84 | |
| d1zpva1 | 83 | UPF0237 protein SP0238 {Streptococcus pneumoniae [ | 96.84 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.81 | |
| d1b26a1 | 234 | Glutamate dehydrogenase {Thermotoga maritima [TaxI | 96.81 | |
| d1v9la1 | 242 | Glutamate dehydrogenase {Pyrobaculum islandicum [T | 96.76 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.75 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 96.72 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 96.7 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 96.6 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 96.58 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 96.55 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 96.51 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 96.51 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.5 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 96.45 | |
| d1kjqa2 | 111 | Glycinamide ribonucleotide transformylase PurT, N- | 96.44 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 96.44 | |
| d1u8sa1 | 86 | putative transcriptional repressor VC2159 {Vibrio | 96.43 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 96.43 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 96.42 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 96.35 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 96.35 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 96.35 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 96.29 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 96.25 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 96.25 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 96.24 | |
| d1hwxa1 | 293 | Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: | 96.24 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 96.21 | |
| d1u8sa2 | 93 | putative transcriptional repressor VC2159 {Vibrio | 96.19 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.16 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 96.13 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.99 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 95.98 | |
| d1b7go1 | 178 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 95.98 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 95.95 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 95.94 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 95.93 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 95.82 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 95.8 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.77 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 95.72 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.69 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 95.68 | |
| d1kyqa1 | 150 | Bifunctional dehydrogenase/ferrochelatase Met8p, N | 95.57 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 95.56 | |
| d3etja2 | 78 | N5-carboxyaminoimidazole ribonucleotide synthetase | 95.47 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 95.32 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.32 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 95.24 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 95.23 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 95.22 | |
| d1otha2 | 170 | Ornithine transcarbamoylase {Human (Homo sapiens) | 95.15 | |
| d1pvva2 | 163 | Ornithine transcarbamoylase {Archaeon Pyrococcus f | 95.08 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 94.94 | |
| d1cf2o1 | 171 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.9 | |
| d1pg5a2 | 153 | Aspartate carbamoyltransferase catalytic subunit { | 94.85 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 94.81 | |
| d2czca2 | 172 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 94.62 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 94.62 | |
| d1lc0a1 | 172 | Biliverdin reductase {Rat (Rattus norvegicus) [Tax | 94.58 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 94.41 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 94.32 | |
| d1vlva2 | 161 | Ornithine transcarbamoylase {Thermotoga maritima [ | 94.31 | |
| d2qmwa2 | 80 | Prephenate dehydratase C-terminal domain {Staphylo | 94.31 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 94.24 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 94.17 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 94.15 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 94.14 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 93.8 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 93.56 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 93.42 | |
| d1ml4a2 | 157 | Aspartate carbamoyltransferase catalytic subunit { | 93.34 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 93.07 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 92.97 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 92.84 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 92.79 | |
| d1o6za1 | 142 | Malate dehydrogenase {Archaeon Haloarcula marismor | 92.72 | |
| d1dxha2 | 185 | Ornithine transcarbamoylase {Pseudomonas aeruginos | 92.56 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 92.28 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 92.16 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 92.15 | |
| d1s6ya1 | 169 | 6-phospho-beta-glucosidase {Bacillus stearothermop | 91.92 | |
| d2at2a2 | 151 | Aspartate carbamoyltransferase catalytic subunit { | 91.91 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 91.86 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 91.63 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 91.52 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 91.51 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 91.18 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 91.11 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 91.05 | |
| d1ekxa2 | 160 | Aspartate carbamoyltransferase catalytic subunit { | 90.93 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 90.36 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 90.22 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 90.13 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 89.86 | |
| d1cdoa2 | 175 | Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI | 89.81 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 89.69 | |
| d1onfa2 | 117 | Glutathione reductase {Plasmodium falciparum [TaxI | 89.56 | |
| d1gtea4 | 196 | Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su | 89.31 | |
| d1v59a2 | 122 | Dihydrolipoamide dehydrogenase {Baker's yeast (Sac | 89.3 | |
| d1gesa2 | 116 | Glutathione reductase {Escherichia coli [TaxId: 56 | 89.22 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 89.12 | |
| d1fcda1 | 186 | Flavocytochrome c sulfide dehydrogenase, FCSD, fla | 89.06 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 88.98 | |
| d1ebda2 | 117 | Dihydrolipoamide dehydrogenase {Bacillus stearothe | 88.96 | |
| d1mo9a2 | 121 | NADH-dependent 2-ketopropyl coenzyme M oxidoreduct | 88.67 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 88.24 | |
| d2g5ca1 | 110 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 88.2 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 88.03 | |
| d3grsa2 | 125 | Glutathione reductase {Human (Homo sapiens) [TaxId | 88.03 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 88.0 | |
| d1vl6a1 | 222 | Malate oxidoreductase (malic enzyme) {Thermotoga m | 87.87 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 87.83 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 87.6 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 87.48 | |
| d1nhpa2 | 123 | NADH peroxidase {Enterococcus faecalis [TaxId: 135 | 87.36 | |
| d1d7ya2 | 121 | NADH-dependent ferredoxin reductase, BphA4 {Pseudo | 87.31 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 87.24 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 87.17 | |
| d1xgka_ | 350 | Negative transcriptional regulator NmrA {Aspergill | 87.15 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 87.05 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 87.0 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 86.96 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 86.95 | |
| d1phza1 | 97 | Phenylalanine hydroxylase N-terminal domain {Rat ( | 86.92 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 86.86 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 86.79 | |
| d5mdha1 | 154 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 86.79 | |
| d2dt5a2 | 126 | Transcriptional repressor Rex, C-terminal domain { | 86.5 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 86.47 | |
| d2gz1a1 | 154 | Aspartate beta-semialdehyde dehydrogenase {Strepto | 86.46 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 86.4 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 86.14 | |
| d1dxla2 | 123 | Dihydrolipoamide dehydrogenase {Garden pea (Pisum | 86.12 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 86.11 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 86.1 | |
| d1diha1 | 162 | Dihydrodipicolinate reductase {Escherichia coli [T | 86.1 | |
| d3lada2 | 119 | Dihydrolipoamide dehydrogenase {Azotobacter vinela | 85.95 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 85.78 | |
| d1h6va2 | 122 | Mammalian thioredoxin reductase {Rat (Rattus norve | 85.69 | |
| d1yl7a1 | 135 | Dihydrodipicolinate reductase {Mycobacterium tuber | 85.59 | |
| d1xhca2 | 122 | NADH oxidase /nitrite reductase {Pyrococcus furios | 85.49 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 85.39 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 85.38 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 85.26 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 85.2 | |
| d1db3a_ | 357 | GDP-mannose 4,6-dehydratase {Escherichia coli [Tax | 85.2 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 85.12 | |
| d1ojta2 | 125 | Dihydrolipoamide dehydrogenase {Neisseria meningit | 84.88 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 84.84 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 84.81 | |
| d1q1ra2 | 133 | Putidaredoxin reductase {Pseudomonas putida [TaxId | 84.73 | |
| d1jw9b_ | 247 | Molybdenum cofactor biosynthesis protein MoeB {Esc | 84.53 | |
| d1vm6a3 | 128 | Dihydrodipicolinate reductase {Thermotoga maritima | 84.21 | |
| d2cvoa1 | 183 | Putative semialdehyde dehydrogenase {Rice (Oryza s | 84.12 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 84.01 | |
| d1d7oa_ | 297 | Enoyl-ACP reductase {Oil seed rape (Brassica napus | 84.0 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 83.95 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 83.88 | |
| d1lvla2 | 115 | Dihydrolipoamide dehydrogenase {Pseudomonas putida | 83.72 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 83.45 | |
| d2g17a1 | 179 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 83.3 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 82.78 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 82.72 | |
| d1gu7a2 | 189 | 2,4-dienoyl-CoA reductase {Yeast (Candida tropical | 82.59 | |
| d1duvg2 | 183 | Ornithine transcarbamoylase {Escherichia coli [Tax | 82.51 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 82.45 | |
| d2h7ma1 | 268 | Enoyl-ACP reductase {Mycobacterium tuberculosis, T | 82.37 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 82.13 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 81.9 | |
| d1dssg1 | 169 | Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) { | 81.79 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 81.77 | |
| d1tuga1 | 310 | Aspartate carbamoyltransferase catalytic subunit { | 81.43 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 81.41 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 81.31 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 81.26 | |
| d1qyca_ | 307 | Phenylcoumaran benzylic ether reductase {Loblolly | 81.03 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 81.03 | |
| d1sbya1 | 254 | Drosophila alcohol dehydrogenase {Fly (Drosophila | 80.83 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 80.77 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 80.62 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 80.35 | |
| d7mdha1 | 175 | Malate dehydrogenase {Sorghum (Sorghum vulgare), c | 80.24 | |
| d1vl0a_ | 281 | DTDP-4-dehydrorhamnose reductase RfbD {Clostridium | 80.15 |
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=7.8e-49 Score=382.74 Aligned_cols=184 Identities=47% Similarity=0.783 Sum_probs=178.0
Q ss_pred ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh
Q 006212 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (656)
Q Consensus 186 n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~ 265 (656)
|+.+||||+++|||++.|+++++++.+++|.|.+..+.+.++.||++||+|+|.||+.+|+++++|||+|++|||+....
T Consensus 1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~~~~ 80 (184)
T d1ygya1 1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYVSPA 80 (184)
T ss_dssp SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTSCHH
T ss_pred CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCCChh
Confidence 67899999999999999999999999999999987788999999999999999999999999999999999999998777
Q ss_pred HHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeec
Q 006212 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (656)
Q Consensus 266 ~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV 345 (656)
.....++...++++++++||+|++|||+|++|+++||++.|++||+|++|||+|||++||++||+++|++|+|.||++||
T Consensus 81 ~~~~~~~~~~~l~ell~~sDiv~~~~Plt~~T~~lin~~~l~~mk~~a~lIN~sRG~iVde~aL~~aL~~~~i~~a~lDV 160 (184)
T d1ygya1 81 RAAQLGIELLSLDDLLARADFISVHLPKTPETAGLIDKEALAKTKPGVIIVNAARGGLVDEAALADAITGGHVRAAGLDV 160 (184)
T ss_dssp HHHHHTCEECCHHHHHHHCSEEEECCCCSTTTTTCBCHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHTSSEEEEEESS
T ss_pred HHhhcCceeccHHHHHhhCCEEEEcCCCCchhhhhhhHHHHhhhCCCceEEEecchhhhhhHHHHHHHhcCcEeEEEEeC
Confidence 77788888899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCccccCCcEEEcCCCC
Q 006212 346 FTEEPPAKDSKLVQHENVTVTPHLG 370 (656)
Q Consensus 346 ~~~EP~~~~~~L~~~~nvilTPH~g 370 (656)
|+.||++ ++|||++||+++|||+|
T Consensus 161 ~~~EP~~-~~~l~~~~nviiTPHIG 184 (184)
T d1ygya1 161 FATEPCT-DSPLFELAQVVVTPHLG 184 (184)
T ss_dssp CSSSSCS-CCGGGGCTTEEECSSCS
T ss_pred CCCCCCC-CchHhcCCCEEECCCCC
Confidence 9999985 89999999999999997
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=100.00 E-value=1.6e-46 Score=368.82 Aligned_cols=184 Identities=34% Similarity=0.550 Sum_probs=171.7
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHcccccccc-------ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECC
Q 006212 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSK-------YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260 (656)
Q Consensus 188 ~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~-------~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~ 260 (656)
++||||++++||+++|+++.+++.+|+|.|.+.. ..|.+|+||||||||+|+||+.+|+++++|||+|++|||
T Consensus 1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~ 80 (193)
T d1mx3a1 1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP 80 (193)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence 5899999999999999999999999999998642 458899999999999999999999999999999999999
Q ss_pred CCChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeE
Q 006212 261 YAPADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVA 339 (656)
Q Consensus 261 ~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~ 339 (656)
+.........++... ++++++++||+|++|+|++++|++++|++.|++||+|++|||+|||++||++||+++|++|+|.
T Consensus 81 ~~~~~~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~ 160 (193)
T d1mx3a1 81 YLSDGVERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIR 160 (193)
T ss_dssp TSCTTHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSHHHHTTSCTTEEEEECSCTTSBCHHHHHHHHHHTSEE
T ss_pred cccccchhhhccccccchhhccccCCEEEEeecccccchhhhhHHHHhccCCCCeEEecCCceEEcHHHHHHHHHcCCce
Confidence 876655666677654 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeccCCCCCC-CCCccccCCcEEEcCCCCC
Q 006212 340 QAALDVFTEEPPA-KDSKLVQHENVTVTPHLGA 371 (656)
Q Consensus 340 gA~lDV~~~EP~~-~~~~L~~~~nvilTPH~g~ 371 (656)
||++|||+.||++ .++||+++||+++|||+|+
T Consensus 161 ~a~lDV~~~EP~~~~~~~l~~~~nvi~TPHiA~ 193 (193)
T d1mx3a1 161 GAALDVHESEPFSFSQGPLKDAPNLICTPHAAW 193 (193)
T ss_dssp EEEESCCSSSSCCTTSSTTTTCSSEEECSSCTT
T ss_pred EEEEEcCCCCCCCCCchhHHcCCCEEEcCCcCc
Confidence 9999999999976 5789999999999999975
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=100.00 E-value=2.1e-46 Score=367.43 Aligned_cols=185 Identities=34% Similarity=0.544 Sum_probs=169.7
Q ss_pred hhhHHHHHHHHHHHHHhchhHHHHHHHccccccc---cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC
Q 006212 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS---KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (656)
Q Consensus 187 ~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~---~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~ 263 (656)
+.+||||+++|||+++|+++++++.+|+|+|... .+.|.+++|||+||||+|+||+.+|+++++|||+|++||++..
T Consensus 2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~ 81 (191)
T d1gdha1 2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA 81 (191)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhcccccccccccc
Confidence 5799999999999999999999999999999642 4568899999999999999999999999999999999999763
Q ss_pred -hhHHHHc-CCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEE
Q 006212 264 -ADKARAV-GVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQA 341 (656)
Q Consensus 264 -~~~a~~~-g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA 341 (656)
....... +....++++++++||+|++|+|+|++|+++||++.|+.||+|++|||+|||++||++||+++|++|+|.||
T Consensus 82 ~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~g~i~~a 161 (191)
T d1gdha1 82 SSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNKATIKSLPQGAIVVNTARGDLVDNELVVAALEAGRLAYA 161 (191)
T ss_dssp CHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEE
T ss_pred ccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecHHHhhCcCCccEEEecCCccchhhHHHHHHHHcCCceEE
Confidence 3333333 34556899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006212 342 ALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (656)
Q Consensus 342 ~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~ 372 (656)
++|||+.||+ .++|||++||+++|||+|++
T Consensus 162 ~lDV~~~EP~-~~~~l~~~~nvi~TPHiasa 191 (191)
T d1gdha1 162 GFDVFAGEPN-INEGYYDLPNTFLFPHIGSA 191 (191)
T ss_dssp EESCCTTTTS-CCTTGGGCTTEEECSSCTTC
T ss_pred EEECCCCCCC-CCchHHcCCCEEECCccccC
Confidence 9999999995 58899999999999999874
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=100.00 E-value=3.4e-45 Score=357.95 Aligned_cols=184 Identities=28% Similarity=0.450 Sum_probs=171.2
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHcccccccc--ccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-Ch
Q 006212 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSK--YVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA 264 (656)
Q Consensus 188 ~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~--~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~ 264 (656)
.+||||+++++|+++|++.+++..+++|+|.+.. ..+.+|.|+++||||+|+||+.+|+++++|||+|++||++. +.
T Consensus 1 isVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d2naca1 1 ISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHRLPE 80 (188)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSCCCH
T ss_pred CcHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeeccccc
Confidence 4899999999999999999999999999997643 24779999999999999999999999999999999999876 44
Q ss_pred hHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEe
Q 006212 265 DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAAL 343 (656)
Q Consensus 265 ~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~l 343 (656)
......++. ..++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|++.||++
T Consensus 81 ~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~~~l~~mk~ga~lIN~aRG~ivd~~aL~~aL~~g~i~ga~l 160 (188)
T d2naca1 81 SVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMINDETLKLFKRGAYIVNTARGKLCDRDAVARALESGRLAGYAG 160 (188)
T ss_dssp HHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSHHHHTTSCTTEEEEECSCGGGBCHHHHHHHHHTTSEEEEEE
T ss_pred cccccccccccCCHHHHHHhccchhhcccccccchhhhHHHHHHhCCCCCEEEecCchhhhhHHHHHHHHhCCCceeEEE
Confidence 555555654 4589999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCccccCCcEEEcCCCCC
Q 006212 344 DVFTEEPPAKDSKLVQHENVTVTPHLGA 371 (656)
Q Consensus 344 DV~~~EP~~~~~~L~~~~nvilTPH~g~ 371 (656)
|||+.||++.++||+++||+++|||+||
T Consensus 161 DV~~~EP~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d2naca1 161 DVWFPQPAPKDHPWRTMPYNGMTPHISG 188 (188)
T ss_dssp SCCSSSSCCTTCGGGTSTTBCCCCSCTT
T ss_pred eCCCCCCCCCCChHHcCCCeEEccccCc
Confidence 9999999999999999999999999986
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=100.00 E-value=2.2e-45 Score=361.71 Aligned_cols=183 Identities=33% Similarity=0.476 Sum_probs=169.4
Q ss_pred hhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH
Q 006212 188 VAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA 267 (656)
Q Consensus 188 ~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a 267 (656)
++||||++++||+++|+++.+++.+++|+|.+..+.|.+|+||||||||+|+||+.+|+++++|||+|++|||+.....
T Consensus 2 ~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~~~~~- 80 (197)
T d1j4aa1 2 NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFRNPEL- 80 (197)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCHHH-
T ss_pred CHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccccccc-
Confidence 6899999999999999999999999999988777789999999999999999999999999999999999999875433
Q ss_pred HHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccC
Q 006212 268 RAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFT 347 (656)
Q Consensus 268 ~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~ 347 (656)
...++...++++++++||+|++|+|+|++|+++++++.|+.||+|++|||+|||++||++||+++|++|++.||++|||+
T Consensus 81 ~~~~~~~~~l~~~l~~sDii~~~~plt~~T~~li~~~~l~~mk~~a~lIN~sRG~ivde~aL~~aL~~~~i~~a~lDV~~ 160 (197)
T d1j4aa1 81 EKKGYYVDSLDDLYKQADVISLHVPDVPANVHMINDESIAKMKQDVVIVNVSRGPLVDTDAVIRGLDSGKIFGYAMDVYE 160 (197)
T ss_dssp HHTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSHHHHHHSCTTEEEEECSCGGGBCHHHHHHHHHHTSEEEEEESCCT
T ss_pred ccceeeeccccccccccccccccCCccccccccccHHHHhhhCCccEEEecCchhhhhhHHHHHHHhcccchheeeeccc
Confidence 34466677999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-------------CCCCccccCCcEEEcCCCCC
Q 006212 348 EEPP-------------AKDSKLVQHENVTVTPHLGA 371 (656)
Q Consensus 348 ~EP~-------------~~~~~L~~~~nvilTPH~g~ 371 (656)
.||. +.+++|+.+|||++|||+|+
T Consensus 161 ~Ep~~~~~~~~~~~~p~~~~~~L~~~~nviiTPHiA~ 197 (197)
T d1j4aa1 161 GEVGIFNEDWEGKEFPDARLADLIARPNVLVTPKTAF 197 (197)
T ss_dssp TCTTTTTSBCTTSCCSCHHHHHHHHCTTEEECSSCTT
T ss_pred cCCcccccccccccCCccchhhhhcCCCEEeCcccCc
Confidence 9953 33467999999999999974
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=100.00 E-value=9.1e-46 Score=365.21 Aligned_cols=184 Identities=30% Similarity=0.498 Sum_probs=168.4
Q ss_pred hhhHHHHHHHHHHHHHhchhHHHHHHHccccccc-cccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh
Q 006212 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRS-KYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (656)
Q Consensus 187 ~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~-~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~ 265 (656)
..+||||++++||+++|+++++++.+++|.|.+. .+.|.+|.||||||||+|+||+.+|+++++|||+|++|||+....
T Consensus 2 p~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 81 (199)
T d1dxya1 2 PAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYPMKG 81 (199)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSS
T ss_pred ChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCccchh
Confidence 4689999999999999999999999999999864 357899999999999999999999999999999999999986322
Q ss_pred HHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeec
Q 006212 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (656)
Q Consensus 266 ~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV 345 (656)
....+...++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||++||+++|++|+|.||++||
T Consensus 82 --~~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~vvde~aL~~aL~~g~i~ga~lDV 159 (199)
T d1dxya1 82 --DHPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINEAAFNLMKPGAIVINTARPNLIDTQAMLSNLKSGKLAGVGIDT 159 (199)
T ss_dssp --CCTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCHHHHHHSCTTEEEEECSCTTSBCHHHHHHHHHTTSEEEEEESS
T ss_pred --hhcchhHHHHHHHHHhcccceeeecccccccccccHHHhhccCCceEEEecccHhhhhhHHHHHHHhcCCcceEeccc
Confidence 223456779999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC-------------CCCccccCCcEEEcCCCCCC
Q 006212 346 FTEEPPA-------------KDSKLVQHENVTVTPHLGAS 372 (656)
Q Consensus 346 ~~~EP~~-------------~~~~L~~~~nvilTPH~g~~ 372 (656)
|+.||++ ..++|+.+|||++|||+||+
T Consensus 160 ~~~EP~~~~~~~~~~~~~~p~~~~L~~~~nviiTPHiagy 199 (199)
T d1dxya1 160 YEYETEDLLNLAKHGSFKDPLWDELLGMPNVVLSPHIAYY 199 (199)
T ss_dssp CTTHHHHHHHHHHHSSCCCHHHHHHHTCTTEEECSSCTTC
T ss_pred cCCCCcchhhccccccccChhhHHHhcCCCEEECCccccC
Confidence 9999852 23578899999999999986
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=7.5e-45 Score=355.51 Aligned_cols=184 Identities=33% Similarity=0.474 Sum_probs=160.0
Q ss_pred ChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh
Q 006212 186 NTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD 265 (656)
Q Consensus 186 n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~ 265 (656)
|+++||||++++||++.|++++++..+++|.|.+....+.++.|++|||||+|.||+.+|+++++|||+|++||++....
T Consensus 1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~~~~ 80 (188)
T d1sc6a1 1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIENKLP 80 (188)
T ss_dssp THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCCC
T ss_pred CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccccch
Confidence 78999999999999999999999999999999987778889999999999999999999999999999999999875322
Q ss_pred HHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeec
Q 006212 266 KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDV 345 (656)
Q Consensus 266 ~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV 345 (656)
. .......++++++++||+|++|+|+|++|+++|+++.|++||++++|||+|||++||++||+++|+++++.||++||
T Consensus 81 ~--~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~~~l~~mk~~a~lIN~aRG~lvde~aL~~aL~~~~~~~a~lDV 158 (188)
T d1sc6a1 81 L--GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGAKEISLMKPGSLLINASRGTVVDIPALADALASKHLAGAAIDV 158 (188)
T ss_dssp C--TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCHHHHHHSCTTEEEEECSCSSSBCHHHHHHHHHTTSEEEEEEEC
T ss_pred h--hhhhhhhhHHHHHhhccceeecccCCcchhhhccHHHHhhCCCCCEEEEcCcHHhhhhHHHHHHHHcCCceEEEEec
Confidence 1 12234458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCC----CCCccccCCcEEEcCCCCC
Q 006212 346 FTEEPPA----KDSKLVQHENVTVTPHLGA 371 (656)
Q Consensus 346 ~~~EP~~----~~~~L~~~~nvilTPH~g~ 371 (656)
|+.||.. ..+||+++||+++|||+||
T Consensus 159 ~~~EP~~~~~~~~~~l~~~~nv~~TPHiaG 188 (188)
T d1sc6a1 159 FPTEPATNSDPFTSPLAEFDNVLLTPHIGG 188 (188)
T ss_dssp ---------CTTTGGGTTCTTEEEECCCSC
T ss_pred CCCCCCCcCCccchhHhcCCCEEEcCCcCc
Confidence 9999973 3468999999999999986
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=100.00 E-value=1.1e-43 Score=345.20 Aligned_cols=180 Identities=27% Similarity=0.323 Sum_probs=164.0
Q ss_pred hhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH
Q 006212 187 TVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK 266 (656)
Q Consensus 187 ~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~ 266 (656)
+++||||+++|||+++|++.++++.+++|+|.+... ..+|.||||||||+|.||+.+|+++++|||+|++|||+....
T Consensus 1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~-~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~~~~- 78 (181)
T d1qp8a1 1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVE-IPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTPKEG- 78 (181)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSC-CCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSCCCS-
T ss_pred CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCC-CCcccCceEEEeccccccccceeeeecccccccccccccccc-
Confidence 478999999999999999999999999999987543 347999999999999999999999999999999999986321
Q ss_pred HHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeecc
Q 006212 267 ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVF 346 (656)
Q Consensus 267 a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~ 346 (656)
......++++++++||+|++|+|+|++|+++|+++.|++||+|++|||+|||++||+++|+++|+++++.||++|||
T Consensus 79 ---~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~~~l~~mk~~ailIN~~RG~ivd~~aL~~aL~~~~i~~aalDV~ 155 (181)
T d1qp8a1 79 ---PWRFTNSLEEALREARAAVCALPLNKHTRGLVKYQHLALMAEDAVFVNVGRAEVLDRDGVLRILKERPQFIFASDVW 155 (181)
T ss_dssp ---SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCHHHHTTSCTTCEEEECSCGGGBCHHHHHHHHHHCTTCEEEESCC
T ss_pred ---ceeeeechhhhhhccchhhcccccccccccccccceeeeccccceEEeccccccccchhhhhhcccCcEEEEEEecC
Confidence 11223589999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCCCCccccCCcEEEcCCCCC
Q 006212 347 TEE-PPAKDSKLVQHENVTVTPHLGA 371 (656)
Q Consensus 347 ~~E-P~~~~~~L~~~~nvilTPH~g~ 371 (656)
+.| |.+.++||+++|||++|||+||
T Consensus 156 ~~e~p~~~~~~l~~~~nvi~TPHiaG 181 (181)
T d1qp8a1 156 WGRNDFAKDAEFFSLPNVVATPWVAG 181 (181)
T ss_dssp TTTTCCGGGHHHHTSTTEEECCSCSS
T ss_pred CCCCCCCCCChHHcCCCEEeccccCc
Confidence 765 5567889999999999999986
|
| >d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.95 E-value=3.8e-28 Score=222.93 Aligned_cols=129 Identities=35% Similarity=0.457 Sum_probs=122.4
Q ss_pred CCCeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccc
Q 006212 89 PKPTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVD 168 (656)
Q Consensus 89 ~~~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD 168 (656)
.|||||+++++++..++.|++.+++++....+++|+.+.++++|++++++.+++++++++++ |+||+|+++|+|+||||
T Consensus 1 sMpkvli~~~~~~~~~~~L~~~~~v~~~~~~~~~el~~~~~~~d~ii~~~~~~i~~~~l~~~-p~Lk~I~~~g~G~d~ID 79 (130)
T d1ygya2 1 SLPVVLIADKLAPSTVAALGDQVEVRWVDGPDRDKLLAAVPEADALLVRSATTVDAEVLAAA-PKLKIVARAGVGLDNVD 79 (130)
T ss_dssp CCCEEEECSSCCGGGGTTSCSSSEEEECCTTSHHHHHHHGGGCSEEEECSSSCBCHHHHHTC-TTCCEEEESSSCCTTBC
T ss_pred CCCEEEEECCCCHHHHHHHhCCcEEEECCCCCHHHHHHHcCCCEEEEEcCcccchHHHHhhc-ccceEEeeecccccchh
Confidence 48999999999999999999989999888889999999999999999998889999999998 59999999999999999
Q ss_pred hhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccc
Q 006212 169 LQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWL 218 (656)
Q Consensus 169 ~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~ 218 (656)
+++|+++||.|+|+||+++.+||||+++|||+++|++..+++.+|+|+|.
T Consensus 80 l~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~~ 129 (130)
T d1ygya2 80 VDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVNV 129 (130)
T ss_dssp HHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCSC
T ss_pred HHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCccC
Confidence 99999999999999999999999999999999999999998888888874
|
| >d1ygya4 d.81.2.2 (A:317-451) D-3-phosphoglycerate dehydrogenase SerA {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: SerA intervening domain-like domain: D-3-phosphoglycerate dehydrogenase SerA species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=7.5e-26 Score=208.79 Aligned_cols=131 Identities=18% Similarity=0.235 Sum_probs=119.1
Q ss_pred hhhhhccchHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhHhhcc
Q 006212 409 EVLSELAPYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFTAKQK 488 (656)
Q Consensus 409 ~~~~~l~p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~iAke~ 488 (656)
+++++++||+.||++||+++.||+++ .+++|+++|+|+++ .+++.+++.++++|+|.++.+++||+|||+.+||||
T Consensus 3 ~~~~~l~Pyl~LaekLG~~~~ql~~~--~~~~i~I~~~G~~a--~~~~~~lt~a~l~G~L~~~~~~~VN~VNA~~iAker 78 (135)
T d1ygya4 3 VVNEEVAPWLDLVRKLGVLAGVLSDE--LPVSLSVQVRGELA--AEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAER 78 (135)
T ss_dssp TSCTTTTTHHHHHHHHHHHHHHTSSS--CCSEEEEEEEEGGG--GSCCHHHHHHHHHHHTGGGSCTTCCCCCHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHcCC--CCcEEEEEEEeecc--cccccHHHHHHHHHHHhcccccccchhhHHHHHHHc
Confidence 45678999999999999999999998 89999999999997 788999999999999999998899999999999999
Q ss_pred CceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcEEEEEEEEEC-C-eeEEEEEcceeEEee
Q 006212 489 GLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGEISIEGKVKF-G-IPHLTRVGSFGVDAS 555 (656)
Q Consensus 489 GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~~~v~Gt~~g-G-~~rI~~IdGf~V~~~ 555 (656)
||++++.+.+..+ .|+|++++++. .++++.++|.||++| + .+||++||||+||+.
T Consensus 79 GI~v~~~~~~~~~---~~~n~i~v~~~---------~~~~~~~~v~Gtv~g~~~~~RIv~Idg~~vdvk 135 (135)
T d1ygya4 79 GVTAEICKASESP---NHRSVVDVRAV---------GADGSVVTVSGTLYGPQLSQKIVQINGRHFDLR 135 (135)
T ss_dssp SCEEEEEEESCCS---SSSEEEEEEEE---------CTTSCEEEEEEEEETTTTEEEEEEETTEEEEEE
T ss_pred CCEEEEEECCCCC---CCcccEEEEEE---------eCCCcEEEEEEEEECCCCcEEEEEECCEEEeeC
Confidence 9999998876543 79999999876 256778999999997 4 689999999999974
|
| >d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=99.89 E-value=1.4e-23 Score=192.67 Aligned_cols=123 Identities=32% Similarity=0.365 Sum_probs=105.2
Q ss_pred CCCCeEEEeCCCCHhHHHHhhcCCc--EEEe-cCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEeccccc
Q 006212 88 TPKPTILVSEKLGEAGLAILRSFGN--VECL-YDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGI 164 (656)
Q Consensus 88 ~~~~~ilv~~~l~~~~~~~l~~~~~--v~~~-~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~Gv 164 (656)
..|+|||+++++++.+++.|++.+. +.+. ..++++++.+.++++|++++++.+++++++|+++ |+||+|+++|+|+
T Consensus 2 k~kmKILv~d~i~~~a~~~L~~~g~~~v~~~~~~~~~~~l~~~~~~~d~ii~~~~~~i~~~~i~~~-p~Lk~I~~~gvG~ 80 (132)
T d1sc6a2 2 KDKIKFLLVEGVHQKALESLRAAGYTNIEFHKGALDDEQLKESIRDAHFIGLRSRTHLTEDVINAA-EKLVAIGAFAIGT 80 (132)
T ss_dssp CSSCCEEECSCCCHHHHHHHHHTTCCCEEECSSCCCHHHHHHHTTSCSEEEECSSCCBCHHHHHHC-SSCCEEEECSSCC
T ss_pred CCCCEEEEECCCCHHHHHHHHhCCCEEEEeCCCCCCHHHHHHhhcCCcEEEEecccccChhhhhcc-ccceeEEEecccc
Confidence 4589999999999999999998763 3333 3468999999999999999998889999999998 5999999999999
Q ss_pred CccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHH
Q 006212 165 DNVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIK 213 (656)
Q Consensus 165 D~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~ 213 (656)
||||+++|+++||.|+|+|++++.+||||++.||+ .|++..++...+
T Consensus 81 D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~--~~~~~~~d~~~~ 127 (132)
T d1sc6a2 81 NQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVA--GKLIKYSDNGST 127 (132)
T ss_dssp TTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHH--HHHHHHHHHCCC
T ss_pred cccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHH--HHhhHHHhCcCc
Confidence 99999999999999999999999999998665554 555555555443
|
| >d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=99.88 E-value=9.2e-23 Score=186.51 Aligned_cols=113 Identities=25% Similarity=0.302 Sum_probs=101.8
Q ss_pred CCeEEEeCCCCHhHHHHhhcCCcEEEec---CCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCc
Q 006212 90 KPTILVSEKLGEAGLAILRSFGNVECLY---DLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDN 166 (656)
Q Consensus 90 ~~~ilv~~~l~~~~~~~l~~~~~v~~~~---~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~ 166 (656)
|||||++.+++++.++.|++.+++.+.. .++.+|+.+.++++|+++++..++++++++++++++||+|+++|+|+||
T Consensus 1 K~kVlit~~~~~~~~~~l~~~~~v~~~~~~~~~s~~el~~~~~~~d~ii~~~~~~i~~~~l~~~~~~LK~I~~~gvG~d~ 80 (129)
T d1gdha2 1 KKKILITWPLPEAAMARARESYDVIAHGDDPKITIDEMIETAKSVDALLITLNEKCRKEVIDRIPENIKCISTYSIGFDH 80 (129)
T ss_dssp CCEEEESSCCCHHHHHHHHTTSEEEECCSTTCCCHHHHHHHHTTCSEEEEETTSCBCHHHHHHSCTTCCEEEEESSCCTT
T ss_pred CCEEEEeCCCCHHHHHHHHcCCcEEEeCCCCCCCHHHHHHHhcCCCEEEEcCCchhhhHHHhhhhhcceeeeecccCCcc
Confidence 7899999999999999999988888754 3589999999999999999988899999999986589999999999999
Q ss_pred cchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHH
Q 006212 167 VDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMA 202 (656)
Q Consensus 167 iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~ 202 (656)
||+++|+++||.|+|+||+++.+|||+++++|+.+.
T Consensus 81 ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~ 116 (129)
T d1gdha2 81 IDLDACKARGIKVGNAPHGATQAREDMAHQANDLID 116 (129)
T ss_dssp BCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHH
Confidence 999999999999999999999999997665444443
|
| >d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.83 E-value=7.6e-23 Score=185.03 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=107.0
Q ss_pred CeEEEeCCCCHhHHHHhhcCCcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCccchh
Q 006212 91 PTILVSEKLGEAGLAILRSFGNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQ 170 (656)
Q Consensus 91 ~~ilv~~~l~~~~~~~l~~~~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~ 170 (656)
+||+++.+++++..+.|++..++.... .+.++|++++ ++++++.++++ |+||||++.|+|+||+|++
T Consensus 1 Mki~v~~~lp~e~~e~L~~~~~v~~~~---------d~~~~d~~l~---~~~~~~~l~~~-~~Lk~i~~~~aG~D~i~~~ 67 (121)
T d1qp8a2 1 MELYVNFELPPEAEEELRKYFKIVRGG---------DLGNVEAALV---SRITAEELAKM-PRLKFIQVVTAGLDHLPWE 67 (121)
T ss_dssp CEEECCSCCCHHHHHHHHTTCEEECSS---------CCTTBCCCCB---SCCCHHHHHHC-TTCCCEEBSSSCCTTSCCT
T ss_pred CEEEEeCCCCHHHHHHhhhcceEeecc---------cccccceeee---eccCHHHHhcC-CCceEEEecccCcCCCCHH
Confidence 589999999999999999877654322 2678888876 36999999998 5999999999999999999
Q ss_pred hHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhc
Q 006212 171 AATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKG 250 (656)
Q Consensus 171 aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~ 250 (656)
++. +||.|+|+||+|+.++|||++++||++.|+ ++|+|+|.||+.+|+|+++
T Consensus 68 ~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~---------------------------l~i~G~G~iG~~iA~r~~a 119 (121)
T d1qp8a2 68 SIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRN---------------------------LITYATGGRPRNIAKREDY 119 (121)
T ss_dssp TSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHH---------------------------HHHHHTTSCCSCBCCGGGT
T ss_pred Hhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCC---------------------------EEEEcCCHHHHHHHHHHHh
Confidence 985 699999999999999999999999999983 5799999999999999999
Q ss_pred CC
Q 006212 251 LG 252 (656)
Q Consensus 251 ~G 252 (656)
||
T Consensus 120 ~G 121 (121)
T d1qp8a2 120 IG 121 (121)
T ss_dssp C-
T ss_pred cC
Confidence 97
|
| >d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=99.83 E-value=2.5e-21 Score=177.19 Aligned_cols=122 Identities=18% Similarity=0.168 Sum_probs=101.0
Q ss_pred CeEEEeCCCC--HhHHHHhhc-C-CcEEEecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006212 91 PTILVSEKLG--EAGLAILRS-F-GNVECLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (656)
Q Consensus 91 ~~ilv~~~l~--~~~~~~l~~-~-~~v~~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~-~~LK~I~~~g~GvD 165 (656)
+||++.+..+ .+.++.+.+ + .++.+......+++.+.++++|+++++..+++++++|++++ ++||+|+++|+|+|
T Consensus 1 MKIl~~~~~~~e~~~l~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~ii~~~~~~~~~~vl~~l~~~~Lk~I~~~~vG~d 80 (131)
T d1dxya2 1 MKIIAYGARVDEIQYFKQWAKDTGNTLEYHTEFLDENTVEWAKGFDGINSLQTTPYAAGVFEKMHAYGIKFLTIRNVGTD 80 (131)
T ss_dssp CEEEECSCCTTTHHHHHHHHHHHCCEEEECSSCCCTTGGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred CEEEEEecCcCcHHHHHHHHHHcCeEEEEcCCCCCHHHHHHhcCCCEEEEecCCCCCHHHHhhcccCCeEEEEEcccccc
Confidence 5788876443 344554433 2 36666655556788889999999999888899999999753 47999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHH
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASI 212 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~ 212 (656)
|||+++|+++||.|+|+|++++.+||||++++||+++|++..+++++
T Consensus 81 ~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~~ 127 (131)
T d1dxya2 81 NIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETST 127 (131)
T ss_dssp TBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCTT
T ss_pred cccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhhc
Confidence 99999999999999999999999999999999999999988765544
|
| >d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=99.82 E-value=6.3e-21 Score=174.87 Aligned_cols=124 Identities=23% Similarity=0.370 Sum_probs=106.7
Q ss_pred CCeEEEeCCCC-HhHHHHhhcCCcEEEecCCCHhHHHhh-cCCCeEEEEcCCCCCCHHHHHhcCCcceeEEecccccCcc
Q 006212 90 KPTILVSEKLG-EAGLAILRSFGNVECLYDLSPEALCEK-ISQCDALIVRSGTKVTRSVFEAANGKLKVVGRAGVGIDNV 167 (656)
Q Consensus 90 ~~~ilv~~~l~-~~~~~~l~~~~~v~~~~~~~~eel~~~-i~~~d~liv~~~~~v~~e~l~~~~~~LK~I~~~g~GvD~i 167 (656)
||+|++.|..+ ...++.|++.+++.+....+.+|+.+. +.++|++++++.+++++++|+++ |+||+|+++|+|+|||
T Consensus 1 mP~v~~ld~~d~~~e~~~L~~~~~v~~~~~~s~~e~~e~~~~~a~~vlv~~~~~i~~~~l~~~-~~Lk~I~~~g~G~d~i 79 (133)
T d1mx3a2 1 MPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITLTREDLEKF-KALRIIVRIGSGFDNI 79 (133)
T ss_dssp CCEEEESSCSCCTTTHHHHTTTCEEEECCCSSGGGSCHHHHHHEEEEEECSSSCBCHHHHTTC-SSCCEEEESSSCCTTB
T ss_pred CCEEEEecCCcchhhHHHhcccceEEEecCCChHHHHHHHhccCcEEEEEeCCCcCHHHHhhC-CCCeEEEEcCCCcccE
Confidence 68899888765 344778888888888766677776654 56789999998899999999998 5999999999999999
Q ss_pred chhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccccc
Q 006212 168 DLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKWLR 219 (656)
Q Consensus 168 D~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W~~ 219 (656)
|+++|+++||.|+|+||+++ ++|||+++|||+++|+++++.+ |+|.+
T Consensus 80 D~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~----g~~~~ 126 (133)
T d1mx3a2 80 DIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAIT----GRIPD 126 (133)
T ss_dssp CHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHH----SCTTT
T ss_pred eeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHh----ccccc
Confidence 99999999999999999998 5799999999999999998854 66654
|
| >d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=99.79 E-value=4.5e-20 Score=175.95 Aligned_cols=114 Identities=21% Similarity=0.232 Sum_probs=100.3
Q ss_pred HHHhhcCC-cEEEecC--CCHhHHHhhcCCCeEEEEcC--CCCCCHHHHHhcCCcceeEEecccccCccchhhHHhcCce
Q 006212 104 LAILRSFG-NVECLYD--LSPEALCEKISQCDALIVRS--GTKVTRSVFEAANGKLKVVGRAGVGIDNVDLQAATEFGCL 178 (656)
Q Consensus 104 ~~~l~~~~-~v~~~~~--~~~eel~~~i~~~d~liv~~--~~~v~~e~l~~~~~~LK~I~~~g~GvD~iD~~aa~~~GI~ 178 (656)
.++|++.+ ++....+ .+.+++.+.+.|+|++|++. ..++|+|+|+++ ||||+|+++|+|+||||+++|+++||.
T Consensus 60 r~~Le~~GhelV~~sd~~~~~~el~k~l~DADivI~~pf~~~~lt~e~i~~a-p~LKlI~~~g~G~D~VDl~aa~e~gI~ 138 (186)
T d2naca2 60 RKYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKA-KNLKLALTAGIGSDHVDLQSAIDRNVT 138 (186)
T ss_dssp HHHHHHTTCEEEEESCCSSTTSHHHHHHTTCSEEEEBTTBCCCBCHHHHHHC-TTCCEEEESSSCCTTBCHHHHHHTTCE
T ss_pred HHHHHHCCCEEEEecCCCCChHHHHhhcccCCEEEEecccccccCHHHHhcC-ccceEEEEeccCCccccHHHHHhCCCE
Confidence 56788876 5554433 35668899999999999984 568999999998 599999999999999999999999999
Q ss_pred eecCCCCChhhHHHHH--------HHHHHHHHhchhHHHHHHHccccc
Q 006212 179 VVNAPIANTVAAAEHG--------IALLASMARNVSQADASIKAGKWL 218 (656)
Q Consensus 179 V~n~p~~n~~~vAE~~--------lal~L~~~R~i~~~~~~~~~g~W~ 218 (656)
|+|+||+|+.+||||+ +.++++..|++...+..+++|+|.
T Consensus 139 V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~A 186 (186)
T d2naca2 139 VAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGALA 186 (186)
T ss_dssp EEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEEC
T ss_pred EEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhccccC
Confidence 9999999999999999 778889999999999999999983
|
| >d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: Formate/glycerate dehydrogenases, substrate-binding domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=99.74 E-value=1.6e-18 Score=159.07 Aligned_cols=120 Identities=18% Similarity=0.224 Sum_probs=92.8
Q ss_pred eEEEeCCCCH--hHHHH-hhcCCcEE--EecCCCHhHHHhhcCCCeEEEEcCCCCCCHHHHHhcC-CcceeEEecccccC
Q 006212 92 TILVSEKLGE--AGLAI-LRSFGNVE--CLYDLSPEALCEKISQCDALIVRSGTKVTRSVFEAAN-GKLKVVGRAGVGID 165 (656)
Q Consensus 92 ~ilv~~~l~~--~~~~~-l~~~~~v~--~~~~~~~eel~~~i~~~d~liv~~~~~v~~e~l~~~~-~~LK~I~~~g~GvD 165 (656)
||++....+. ..++. +++..+++ .......+++.+.++++|+++++..++++++++++++ ++||+|+++|+|+|
T Consensus 2 KI~~f~~~~~e~~~~e~~~~~~~~v~v~~~~~~~~~e~~~~~~~~d~viv~~~~~i~~eil~~l~~~~LK~I~~~~vG~d 81 (134)
T d1j4aa2 2 KIFAYAIREDEKPFLKEWEDAHKDVEVEYTDKLLTPETVALAKGADGVVVYQQLDYIAETLQALADNGITKMSLRNVGVD 81 (134)
T ss_dssp EEEECSCCGGGHHHHHHHHHTCTTSEEEECSSCCCTTTGGGGTTCSEEEECCSSCBCHHHHHHHHHTTCCEEEESSSCCT
T ss_pred eEEEEecccccHHHHHHHHHhCCCEEEEECCCCCCHHHHHHhcCCCEEEEecCCCcCHHHHhhhcccCeeEEEEccCCcC
Confidence 6787654433 22333 34445444 3444445778899999999999888899999999652 47999999999999
Q ss_pred ccchhhHHhcCceeecCCCCChhhHHHHHHHHHHHHHhchhHHHHHHHcccc
Q 006212 166 NVDLQAATEFGCLVVNAPIANTVAAAEHGIALLASMARNVSQADASIKAGKW 217 (656)
Q Consensus 166 ~iD~~aa~~~GI~V~n~p~~n~~~vAE~~lal~L~~~R~i~~~~~~~~~g~W 217 (656)
|||+++|+++||.|+|+|++ ++|||++++||+++|++.. .+.+|+|
T Consensus 82 ~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~---~~~~~k~ 127 (134)
T d1j4aa2 82 NIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNL---ELVEGKE 127 (134)
T ss_dssp TBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHH---HHHTTCC
T ss_pred ccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhH---HHhhhhc
Confidence 99999999999999999987 4799999999999998754 3444444
|
| >d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.62 E-value=3e-16 Score=130.47 Aligned_cols=77 Identities=21% Similarity=0.398 Sum_probs=74.6
Q ss_pred CccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEEeec
Q 006212 557 EGNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLLHVS 633 (656)
Q Consensus 557 ~~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v~l~ 633 (656)
+++.|++.|.|+||+|++|+++|+++||||++|+++|..+++.|+|++++|++++++++++|+++++|.+++.++|+
T Consensus 2 eG~~L~i~~~D~PGvi~~I~~~l~~~~iNI~~m~~~~~~~g~~a~~vi~vD~~~~~~vl~~I~~~~~V~~v~~i~l~ 78 (78)
T d1ygya3 2 QGINLIIHYVDRPGALGKIGTLLGTAGVNIQAAQLSEDAEGPGATILLRLDQDVPDDVRTAIAAAVDAYKLEVVDLS 78 (78)
T ss_dssp CSEEEEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEECSSSSCEEEEEEESSCCCHHHHHHHHHHHTEEEEEEEECC
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhcCcChhhheeeecCCCCeEEEEEEcCCCccHHHHHHHHcCCCeEEEEEEecC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999874
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=1.4e-15 Score=142.89 Aligned_cols=121 Identities=24% Similarity=0.323 Sum_probs=99.2
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+..|.||+++|+|||.||+.+|+++++|||+|++||+++ ..-++...|++..+++++++.+|+|++++. ++++|
T Consensus 18 t~~~l~Gk~v~V~GyG~iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~~~~~a~~~adivvtaTG----n~~vI 93 (163)
T d1li4a1 18 TDVMIAGKVAVVAGYGDVGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVTTMDEACQEGNIFVTTTG----CIDII 93 (163)
T ss_dssp HCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCHHHHTTTCSEEEECSS----CSCSB
T ss_pred hCceecCCEEEEeccccccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEeeehhhhhhhccEEEecCC----Cccch
Confidence 4678999999999999999999999999999999999986 344566779999999999999999988754 78899
Q ss_pred cHHHHhcCCCCcEEEEcC-CCchhcHHHHHHhHhcCCeEEEEeeccC
Q 006212 302 NDETFAKMKKGVRIVNVA-RGGVIDEEALVRALDSGVVAQAALDVFT 347 (656)
Q Consensus 302 ~~~~l~~mK~gailINva-Rg~ivde~aL~~aL~~g~i~gA~lDV~~ 347 (656)
+.+.|++||+|++|.|++ +..-+|.++|.+...+.......+|.|.
T Consensus 94 ~~eh~~~MKdgaIL~N~Ghfd~EId~~~L~~~~~~~~~v~~~v~~y~ 140 (163)
T d1li4a1 94 LGRHFEQMKDDAIVCNIGHFDVEIDVKWLNENAVEKVNIKPQVDRYR 140 (163)
T ss_dssp CHHHHTTCCTTEEEEECSSSTTSBCHHHHHHHCSEEEEEETTEEEEE
T ss_pred hHHHHHhccCCeEEEEeccccceecHHHHhhccceeeeecCCeeEEE
Confidence 999999999999999998 4566788888664333333334445443
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=8.6e-14 Score=130.76 Aligned_cols=139 Identities=18% Similarity=0.179 Sum_probs=103.5
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCC-ChhHHHHcCCe--e-cCHHHH-hccCCEEEEccCCCcccccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA-PADKARAVGVE--L-VSFDQA-LATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~-~~~~a~~~g~~--~-~~l~el-l~~aDvV~l~~Plt~~T~~li~ 302 (656)
|+|+|||+|+||.++|++|+..| .+|++||++. ..+.+++.+.. . .+.++. ...+|+|++|+|. .++..++
T Consensus 2 k~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p~-~~~~~vl- 79 (171)
T d2g5ca2 2 QNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIA- 79 (171)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHH-
T ss_pred CEEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCCc-hhhhhhh-
Confidence 57999999999999999999777 4899999986 45667777762 2 244443 3589999999993 3455555
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE---EEeeccCCCCCCCCCccccCCcEEEcCCCCCC
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ---AALDVFTEEPPAKDSKLVQHENVTVTPHLGAS 372 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g---A~lDV~~~EP~~~~~~L~~~~nvilTPH~g~~ 372 (656)
.+....++++++++|++.....-.+++.+.+....+.+ +|.+..+.+ .++..||++.++++|||-...
T Consensus 80 ~~l~~~~~~~~ii~d~~s~k~~~~~~~~~~~~~~~i~~hPm~G~e~sG~~--~a~~~Lf~g~~~il~p~~~~~ 150 (171)
T d2g5ca2 80 KKLSYILSEDATVTDQGSVKGKLVYDLENILGKRFVGGHPIAGTEKSGVE--YSLDNLYEGKKVILTPTKKTD 150 (171)
T ss_dssp HHHHHHSCTTCEEEECCSCCTHHHHHHHHHHGGGEECEEEECCCSCCSGG--GCCSSTTTTCEEEECCCSSSC
T ss_pred hhhhccccccccccccccccHHHHHHHHHhhcccccccccccccccccHH--HHHHHhhCCCeEEEecCCCCC
Confidence 34556689999999999866655666666677766766 344444444 567789999999999997643
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.48 E-value=1e-13 Score=129.91 Aligned_cols=140 Identities=18% Similarity=0.182 Sum_probs=101.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+++|+.|+..|++|.+||++. ..+.+.+.|. ...+..+.+++||+|++|+|. ..+..++ .+..
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl-~~l~ 78 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTL-EKLI 78 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHH-HHHG
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhh-hhhh
Confidence 479999999999999999999999999999985 4566777775 234555788999999999993 4566666 4556
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCC-CCCCCCCccccCCcEEEcCCCCCC
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTE-EPPAKDSKLVQHENVTVTPHLGAS 372 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~-EP~~~~~~L~~~~nvilTPH~g~~ 372 (656)
..++++++++|++........... .+....+..--+.-.+. .|..+...||.+..+++||+-++.
T Consensus 79 ~~l~~~~iv~~~~s~~~~~~~~~~-~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~ 144 (165)
T d2f1ka2 79 PHLSPTAIVTDVASVKTAIAEPAS-QLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTD 144 (165)
T ss_dssp GGSCTTCEEEECCSCCHHHHHHHH-HHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCC
T ss_pred hhcccccceeeccccchHHHHHHH-HhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCC
Confidence 779999999999876654444443 34445554332222111 122345678999999999987655
|
| >d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain domain: Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain species: Escherichia coli [TaxId: 562]
Probab=99.35 E-value=2.7e-13 Score=113.92 Aligned_cols=73 Identities=19% Similarity=0.375 Sum_probs=69.3
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcCCCccEEEEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKVPAIEEYTLL 630 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~~~V~~v~~v 630 (656)
.+.|++.|.|+||++++|+++|+++|+||++|.+.|..+++.+++.+++|++.+++++++|+++|+|.+++++
T Consensus 11 ~~rl~i~~~d~PGvla~I~~~l~~~~iNI~~~~~~~~~~~~~a~~~i~~D~~~~~~v~~~i~~l~~Vi~vR~l 83 (84)
T d1sc6a3 11 GRRLMHIHENRPGVLTALNKIFAEQGVNIAAQYLQTSAQMGYVVIDIEADEDVAEKALQAMKAIPGTIRARLL 83 (84)
T ss_dssp SEEEEEEEESCTTHHHHHHHHHHHTTCEEEEEEEEECSSEEEEEEEEECCHHHHHHHHHHHHTSTTEEEEEEC
T ss_pred CeEEEEEeCCcCCHHHHHHHHHHHcCCCHHHhccccCCCCcEEEEEEECCCCCHHHHHHHHHCCCCEEEEEEe
Confidence 4678889999999999999999999999999999999889999999999999999999999999999999876
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=99.33 E-value=2.1e-12 Score=120.43 Aligned_cols=103 Identities=25% Similarity=0.356 Sum_probs=89.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCcccccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
...+.||++.|+|||.+|+.+|++++++|++|++++..+ ..-+|...|++..+++++++.+|+++.++. .+++|+
T Consensus 18 ~~~laGk~vvV~GYG~vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v~~~~~a~~~aDi~vTaTG----n~~vI~ 93 (163)
T d1v8ba1 18 DFLISGKIVVICGYGDVGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNVVTLDEIVDKGDFFITCTG----NVDVIK 93 (163)
T ss_dssp CCCCTTSEEEEECCSHHHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEECCHHHHTTTCSEEEECCS----SSSSBC
T ss_pred CceecCCEEEEecccccchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCccCchhHccccCcEEEEcCC----CCcccc
Confidence 467899999999999999999999999999999998765 344567789999999999999999999887 456899
Q ss_pred HHHHhcCCCCcEEEEcCCCch-hcHHHHH
Q 006212 303 DETFAKMKKGVRIVNVARGGV-IDEEALV 330 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~i-vde~aL~ 330 (656)
.+.|..||+|++|-|++.-.. +|.++|.
T Consensus 94 ~~h~~~MKdgaIl~N~GHfd~EIdv~~L~ 122 (163)
T d1v8ba1 94 LEHLLKMKNNAVVGNIGHFDDEIQVNELF 122 (163)
T ss_dssp HHHHTTCCTTCEEEECSSTTTSBCHHHHH
T ss_pred HHHHHHhhCCeEEEeccccchhhhhHHHH
Confidence 999999999999999997654 3555554
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.31 E-value=2e-12 Score=120.83 Aligned_cols=111 Identities=15% Similarity=0.266 Sum_probs=93.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
.+|||||+|.||+.+|++|...|++|++||++. ..+.+.+.+.... ++.+++++||+|++|+|..++.+.++. ...
T Consensus 1 MkIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~ 80 (161)
T d1vpda2 1 MKVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGI 80 (161)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCH
T ss_pred CEEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcch
Confidence 479999999999999999999999999999986 3455566676554 899999999999999998877777652 346
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEE
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQ 340 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~g 340 (656)
+..+++|.++||++....-....+.+.++...+..
T Consensus 81 ~~~~~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~ 115 (161)
T d1vpda2 81 IEGAKPGTVLIDMSSIAPLASREISDALKAKGVEM 115 (161)
T ss_dssp HHHCCTTCEEEECSCCCHHHHHHHHHHHHTTTCEE
T ss_pred hhccCCCCEEEECCCCCHHHHHHHHHHHHHcCCce
Confidence 77899999999999988877888888888876633
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.19 E-value=1.9e-11 Score=114.30 Aligned_cols=109 Identities=18% Similarity=0.246 Sum_probs=90.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccccc--HHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN--DET 305 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~--~~~ 305 (656)
++|||||+|.||.++|++|...|++|.+||++. ..+.+...+... .++.+++.++|+|++|+|..+..+.++. ...
T Consensus 2 ~kIg~IGlG~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~ 81 (162)
T d3cuma2 2 KQIAFIGLGHMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGL 81 (162)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCH
T ss_pred CEEEEEEEHHHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccc
Confidence 589999999999999999999999999999886 334556666654 4899999999999999998776665542 345
Q ss_pred HhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 306 FAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 306 l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+..+++|.++||++....-+...+.+.+++..+
T Consensus 82 ~~~l~~g~iiid~st~~p~~~~~~~~~~~~~gi 114 (162)
T d3cuma2 82 LAHIAPGTLVLECSTIAPTSARKIHAAARERGL 114 (162)
T ss_dssp HHHSCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred cccCCCCCEEEECCCCCHHHHHHHHHHHHHCCC
Confidence 677999999999999998888888888887666
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=98.97 E-value=4.5e-10 Score=106.02 Aligned_cols=109 Identities=16% Similarity=0.177 Sum_probs=87.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCC--------e-ecCHHHHhccCCEEEEccCCCcccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGV--------E-LVSFDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~--------~-~~~l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.++|||||+|.||..||++|...|++|++||++.. .+...+.+. . ..++.+.+..+|.+++++|..+.+.
T Consensus 2 ~~nIg~IGlG~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~ 81 (176)
T d2pgda2 2 QADIALIGLAVMGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVD 81 (176)
T ss_dssp CBSEEEECCSHHHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHH
T ss_pred CCcEEEEeEhHHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHH
Confidence 35799999999999999999999999999999863 233333332 1 1246677889999999999877766
Q ss_pred ccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 299 KIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
..+ ...+..+++|.++||++....-+...+.+.+....+
T Consensus 82 ~v~-~~l~~~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~ 120 (176)
T d2pgda2 82 NFI-EKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGI 120 (176)
T ss_dssp HHH-HHHHHHCCTTCEEEECSCCCHHHHHHHHHHHHHTTC
T ss_pred HHH-HHHHhccccCcEEEecCcchhHHHHHHHHHHHhcCC
Confidence 654 567788999999999999999888888888877666
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=98.86 E-value=1.4e-09 Score=100.54 Aligned_cols=117 Identities=15% Similarity=0.173 Sum_probs=86.1
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
+|||||+|+||..||++|...|..++++|..... +.....+. ..+..+.+.++|++++++|..++..... ...+..+
T Consensus 2 kIg~IGlG~MG~~ma~~L~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~v~~~~-~~l~~~~ 79 (156)
T d2cvza2 2 KVAFIGLGAMGYPMAGHLARRFPTLVWNRTFEKALRHQEEFGS-EAVPLERVAEARVIFTCLPTTREVYEVA-EALYPYL 79 (156)
T ss_dssp CEEEECCSTTHHHHHHHHHTTSCEEEECSSTHHHHHHHHHHCC-EECCGGGGGGCSEEEECCSSHHHHHHHH-HHHTTTC
T ss_pred eEEEEeHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHcCC-cccccccccceeEEEecccchhhhhhhh-ccccccc
Confidence 6999999999999999999888877554433222 22333343 3344566778999999999776655443 5677889
Q ss_pred CCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 310 KKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 310 K~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
+++.++||++....-....+.+.+++..+...-.-|++..
T Consensus 80 ~~~~~iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~ 119 (156)
T d2cvza2 80 REGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGT 119 (156)
T ss_dssp CTTEEEEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHH
T ss_pred cccccccccccCCHHHHHHHHHHHHHcCCeEEeccccCch
Confidence 9999999999999888888999999877744433345443
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=98.83 E-value=8.1e-09 Score=94.54 Aligned_cols=123 Identities=15% Similarity=0.195 Sum_probs=85.3
Q ss_pred ccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 226 ~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
...-++|+||| +|+||+++|++|+..|++|.+||+.... ..++.+..+|++++++|.. .+... -.+
T Consensus 6 ~~~~~kI~iIGg~G~mG~~la~~L~~~G~~V~~~d~~~~~-----------~~~~~~~~~~~v~~~~~~~-~~~~v-~~~ 72 (152)
T d2pv7a2 6 NSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDREDWA-----------VAESILANADVVIVSVPIN-LTLET-IER 72 (152)
T ss_dssp CTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTCGG-----------GHHHHHTTCSEEEECSCGG-GHHHH-HHH
T ss_pred CCCCCeEEEEcCCCHHHHHHHHHHHHcCCCcEeccccccc-----------ccchhhhhccccccccchh-hheee-eec
Confidence 34557999999 9999999999999999999999987522 2456678999999999943 33333 356
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCCccccCCcEEEcCC
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDSKLVQHENVTVTPH 368 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~~L~~~~nvilTPH 368 (656)
.+..++++++++|++.-+.-..+++.+.+..+.+.+. =.++.| ..-.....++++|-
T Consensus 73 ~~~~~~~~~iiiD~~Svk~~~~~~~~~~~~~~~v~~h--P~~Gp~-----~~~~~g~~~v~~~g 129 (152)
T d2pv7a2 73 LKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLH--PMFGAD-----IASMAKQVVVRCDG 129 (152)
T ss_dssp HGGGCCTTSEEEECCSCCHHHHHHHHHHCSSEEEEEE--ECSCTT-----CSCCTTCEEEEEEE
T ss_pred ccccccCCceEEEecccCHHHHHHHHHHccCCEEEec--ccCCCc-----ccccCCcEEEEecC
Confidence 7778999999999998665545555554444333221 123322 12234456777763
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=98.82 E-value=4.2e-09 Score=96.77 Aligned_cols=104 Identities=13% Similarity=0.093 Sum_probs=75.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHHh
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETFA 307 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~ 307 (656)
.+|||||+|.||+.+|++|...|++|++||+.... ......++. ..++++++++||+|++|+|... ....+ ....
T Consensus 1 MkIgiIG~G~mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~-~~~~~-~~~~- 77 (152)
T d1i36a2 1 LRVGFIGFGEVAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGV-ALGAA-RRAG- 77 (152)
T ss_dssp CEEEEESCSHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGG-HHHHH-HHHH-
T ss_pred CEEEEEcHHHHHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCch-HHHHH-Hhhc-
Confidence 47999999999999999999999999999977532 233333332 2378999999999999999543 22222 1122
Q ss_pred cCCCCcEEEEcCCCchhcHHHHHHhHhcCC
Q 006212 308 KMKKGVRIVNVARGGVIDEEALVRALDSGV 337 (656)
Q Consensus 308 ~mK~gailINvaRg~ivde~aL~~aL~~g~ 337 (656)
-..+.++||++.........+.+.+++..
T Consensus 78 -~~~~~~~id~st~~p~~~~~l~~~~~~~~ 106 (152)
T d1i36a2 78 -RHVRGIYVDINNISPETVRMASSLIEKGG 106 (152)
T ss_dssp -TTCCSEEEECSCCCHHHHHHHHHHCSSSE
T ss_pred -ccCCceeeccCcCCHHHHHHHHHHHhccC
Confidence 23467899999887766677777666543
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.68 E-value=1.9e-08 Score=92.65 Aligned_cols=102 Identities=15% Similarity=0.250 Sum_probs=78.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-h-hHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-A-DKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~-~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+++++.|...|.+|++|+++.. . +.+++.|+..+ +.++++++||+|++|++ |+. -.+.+
T Consensus 1 MkIg~IG~G~mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk--p~~----~~~vl 74 (152)
T d2ahra2 1 MKIGIIGVGKMASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK--PQL----FETVL 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC--GGG----HHHHH
T ss_pred CEEEEEeccHHHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc--hHh----HHHHh
Confidence 4799999999999999999988999999998752 2 23456687664 89999999999999997 321 24567
Q ss_pred hcCCCCcEEEEcCCCchhcHHHHHHhHhcC-CeE
Q 006212 307 AKMKKGVRIVNVARGGVIDEEALVRALDSG-VVA 339 (656)
Q Consensus 307 ~~mK~gailINvaRg~ivde~aL~~aL~~g-~i~ 339 (656)
+.++++.++|+++.|- ..+.|.+.+..+ ++.
T Consensus 75 ~~l~~~~~iis~~agi--~~~~l~~~l~~~~~iv 106 (152)
T d2ahra2 75 KPLHFKQPIISMAAGI--SLQRLATFVGQDLPLL 106 (152)
T ss_dssp TTSCCCSCEEECCTTC--CHHHHHHHHCTTSCEE
T ss_pred hhcccceeEecccccc--cHHHHHhhhcccccch
Confidence 7899999999998763 455565555443 453
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=5.4e-08 Score=91.25 Aligned_cols=119 Identities=13% Similarity=0.201 Sum_probs=88.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcCCe--------e-cC---HHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVGVE--------L-VS---FDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g~~--------~-~~---l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|||||+|+||..+|++|...|++|.+||++.. .+...+.+.. . .+ +-..+..++.+.++++....
T Consensus 2 MkIGvIGlG~MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (178)
T d1pgja2 2 MDVGVVGLGVMGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAA 81 (178)
T ss_dssp BSEEEECCSHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHH
T ss_pred CEEEEEeehHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcch
Confidence 4699999999999999999999999999998763 2333333321 1 13 33456788999999986655
Q ss_pred ccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEE 349 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~E 349 (656)
....+ ......++++.+++|++....-+...+.+.+....+...-.-|++.+
T Consensus 82 ~~~~~-~~~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~ 133 (178)
T d1pgja2 82 TDSTI-EQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGE 133 (178)
T ss_dssp HHHHH-HHHHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHH
T ss_pred hhhhh-hhhhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCc
Confidence 55554 34566689999999999999888888888888777755544566644
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=98.50 E-value=1.6e-07 Score=87.41 Aligned_cols=103 Identities=23% Similarity=0.245 Sum_probs=72.4
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC---------------e-ecCHHHHhccCCEEEEcc
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV---------------E-LVSFDQALATADFISLHM 291 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~---------------~-~~~l~ell~~aDvV~l~~ 291 (656)
.||++|||.|.||..+|..|...|++|.+||+.. ..+...+.+. . ..++.+.+++||+|++++
T Consensus 1 sk~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v 80 (184)
T d1bg6a2 1 SKTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVV 80 (184)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECS
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEE
Confidence 4899999999999999999999999999999875 2233333331 1 236899999999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHh
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALD 334 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~ 334 (656)
| ...++.++ ++.-..++++.+|+-+. |....+..+.+.+.
T Consensus 81 ~-~~~~~~~~-~~i~~~l~~~~~iv~~~-g~~~~~~~~~~~~~ 120 (184)
T d1bg6a2 81 P-AIHHASIA-ANIASYISEGQLIILNP-GATGGALEFRKILR 120 (184)
T ss_dssp C-GGGHHHHH-HHHGGGCCTTCEEEESS-CCSSHHHHHHHHHH
T ss_pred c-hhHHHHHH-HHhhhccCCCCEEEEeC-CCCccHHHHHHHHH
Confidence 9 44444444 34455789999888543 33333333334443
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.45 E-value=8e-08 Score=89.74 Aligned_cols=94 Identities=27% Similarity=0.469 Sum_probs=78.1
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC--ChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA--PADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~--~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~ 303 (656)
-|++|+|+|||||.-|++=|.+||.-|++|++--+.. +.+.|++.|++..+++|.++.||+|.+.+| +.....++.+
T Consensus 13 ~ik~k~IaViGYGsQG~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v~~~~eA~~~aDiim~L~P-D~~q~~vy~~ 91 (182)
T d1np3a2 13 IIQGKKVAIIGYGSQGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVADVKTAVAAADVVMILTP-DEFQGRLYKE 91 (182)
T ss_dssp HHHTSCEEEECCSHHHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEECHHHHHHTCSEEEECSC-HHHHHHHHHH
T ss_pred HHCCCEEEEEeeCcHhHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhccccccHHHHhhhcCeeeeecc-hHHHHHHHHH
Confidence 4789999999999999999999999999988754433 457889999999999999999999999999 3333456667
Q ss_pred HHHhcCCCCcEEEEcCCC
Q 006212 304 ETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg 321 (656)
.....||+|..|. .++|
T Consensus 92 ~I~p~lk~g~~L~-FaHG 108 (182)
T d1np3a2 92 EIEPNLKKGATLA-FAHG 108 (182)
T ss_dssp HTGGGCCTTCEEE-ESCC
T ss_pred hhhhhcCCCcEEE-Eecc
Confidence 7888899998874 4555
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=98.39 E-value=4.1e-08 Score=89.62 Aligned_cols=86 Identities=10% Similarity=-0.016 Sum_probs=58.0
Q ss_pred EEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hh-HHHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHHhcC
Q 006212 232 LAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-AD-KARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKM 309 (656)
Q Consensus 232 vGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~-~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~m 309 (656)
|||||+|+||+.+|+.|+..+..+.+|+|+.. .+ .+...+....++++++++||+|++|+|.. .. .+.+..+
T Consensus 2 IgfIG~G~mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d~-~i-----~~v~~~l 75 (153)
T d2i76a2 2 LNFVGTGTLTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDR-YI-----KTVANHL 75 (153)
T ss_dssp CEEESCCHHHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCTT-TH-----HHHHTTT
T ss_pred EEEEeCcHHHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccch-hh-----hHHHhhh
Confidence 79999999999999999764433467898752 22 33444555668899999999999999943 22 3344555
Q ss_pred -CCCcEEEEcCCCch
Q 006212 310 -KKGVRIVNVARGGV 323 (656)
Q Consensus 310 -K~gailINvaRg~i 323 (656)
+++.++|+++.+.-
T Consensus 76 ~~~~~ivi~~s~~~~ 90 (153)
T d2i76a2 76 NLGDAVLVHCSGFLS 90 (153)
T ss_dssp CCSSCCEEECCSSSC
T ss_pred cccceeeeecccchh
Confidence 47999999986543
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=98.37 E-value=1.8e-06 Score=82.97 Aligned_cols=106 Identities=24% Similarity=0.315 Sum_probs=83.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhc-cCCEEEEccCCCccccccccH
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~li~~ 303 (656)
.|.||||+|-|+|++|+.+|+.|..+|++|+++|.+. ....+...|...++.++++. +||+++-|. +.+.|++
T Consensus 24 ~L~gk~v~IqG~G~VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~~~~~~~~~~DI~iPcA-----~~~~I~~ 98 (201)
T d1c1da1 24 SLDGLTVLVQGLGAVGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVALEDVLSTPCDVFAPCA-----MGGVITT 98 (201)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECCGGGGGGCCCSEEEECS-----CSCCBCH
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccCccccccccceeeeccc-----ccccccH
Confidence 6999999999999999999999999999999999875 34556677888888999886 799998765 4567999
Q ss_pred HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 304 ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 304 ~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
+...+++- -+|+..+-+++.++++ -+.|.+..|
T Consensus 99 ~~a~~i~a-k~i~e~AN~p~~~~~~-~~~L~~rgI 131 (201)
T d1c1da1 99 EVARTLDC-SVVAGAANNVIADEAA-SDILHARGI 131 (201)
T ss_dssp HHHHHCCC-SEECCSCTTCBCSHHH-HHHHHHTTC
T ss_pred HHHhhhhh-heeeccCCCCcchhhH-HHHhcccce
Confidence 99998874 4666777777766643 234555444
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=98.26 E-value=2.9e-06 Score=79.95 Aligned_cols=93 Identities=24% Similarity=0.370 Sum_probs=73.9
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecC-----------------------------
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVS----------------------------- 276 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~----------------------------- 276 (656)
+.-.+|.|||.|..|..-++.++++|.+|.++|.+. ..+..++++..+++
T Consensus 27 V~pa~VvViGaGvaG~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~ 106 (183)
T d1l7da1 27 VPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAE 106 (183)
T ss_dssp ECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHH
T ss_pred cCCcEEEEEcCcHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHH
Confidence 556799999999999999999999999999999886 55666666643321
Q ss_pred -HHHHhccCCEEEEccCC-CccccccccHHHHhcCCCCcEEEEcC
Q 006212 277 -FDQALATADFISLHMPL-NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 277 -l~ell~~aDvV~l~~Pl-t~~T~~li~~~~l~~mK~gailINva 319 (656)
+.+.+++||+|+.++=. ....-.+++++.++.||||++|||++
T Consensus 107 ~l~~~l~~aDlVI~talipG~~aP~lit~~mv~~Mk~GSVIVDva 151 (183)
T d1l7da1 107 AVLKELVKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLA 151 (183)
T ss_dssp HHHHHHTTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETT
T ss_pred HHHHHHHhhhhheeeeecCCcccceeehHHHHHhcCCCcEEEEEe
Confidence 33458899999865432 22355689999999999999999996
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=98.24 E-value=4.5e-07 Score=82.89 Aligned_cols=104 Identities=19% Similarity=0.295 Sum_probs=71.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCC-hhH-HHHcCCeecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAP-ADK-ARAVGVELVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~-~~~-a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.+|||||+|+||+++++.|...| .+|.+||++.. .+. +.+.|+...+-.+.+.+||+|++|+| |+. + .+.+
T Consensus 1 MkI~fIG~G~MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~v~~~Div~lavk--P~~---~-~~v~ 74 (152)
T d1yqga2 1 MNVYFLGGGNMAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELHSDDVLILAVK--PQD---M-EAAC 74 (152)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCCTTSEEEECSC--HHH---H-HHHH
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhcccccccccccccccceEEEecC--HHH---H-HHhH
Confidence 47999999999999999887555 89999999863 233 44567776644445788999999997 321 1 2233
Q ss_pred hcC-CCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEE
Q 006212 307 AKM-KKGVRIVNVARGGVIDEEALVRALDS-GVVAQA 341 (656)
Q Consensus 307 ~~m-K~gailINvaRg~ivde~aL~~aL~~-g~i~gA 341 (656)
..+ +.+.++|.+.-|- ..+.+.+.+.. .++..+
T Consensus 75 ~~l~~~~~~viS~~ag~--~~~~l~~~l~~~~~iir~ 109 (152)
T d1yqga2 75 KNIRTNGALVLSVAAGL--SVGTLSRYLGGTRRIVRV 109 (152)
T ss_dssp TTCCCTTCEEEECCTTC--CHHHHHHHTTSCCCEEEE
T ss_pred HHHhhcccEEeecccCC--CHHHHHHHhCcCcceEee
Confidence 333 3478999988765 45566666643 345443
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=98.22 E-value=1.3e-06 Score=81.27 Aligned_cols=93 Identities=27% Similarity=0.348 Sum_probs=74.0
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHcC---Cee-----cCHHHHhccCCEEEEccCC-Ccc
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAVG---VEL-----VSFDQALATADFISLHMPL-NPT 296 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~g---~~~-----~~l~ell~~aDvV~l~~Pl-t~~ 296 (656)
+.-.++.|||.|..|..-++.++++|.+|.++|.+.. .+..+... ++. ..+++.+++||+|+.++-. ...
T Consensus 30 v~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~ 109 (168)
T d1pjca1 30 VKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRR 109 (168)
T ss_dssp BCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSS
T ss_pred CCCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcc
Confidence 5678999999999999999999999999999998752 23222221 221 1478899999999887642 334
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
.-.+|.++.++.||||++|||++
T Consensus 110 aP~lIt~~mv~~Mk~GSVIVDva 132 (168)
T d1pjca1 110 APILVPASLVEQMRTGSVIVDVA 132 (168)
T ss_dssp CCCCBCHHHHTTSCTTCEEEETT
T ss_pred cCeeecHHHHhhcCCCcEEEEee
Confidence 67899999999999999999996
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=98.22 E-value=1e-06 Score=84.86 Aligned_cols=90 Identities=20% Similarity=0.292 Sum_probs=72.0
Q ss_pred ccCC-CEEEEEecChhHHHHHHHHhc------CCCEEEE-ECCC-CChhHHHHcCCe-----ecCHHHHhccCCEEEEcc
Q 006212 226 SLVG-KTLAVMGFGKVGSEVARRAKG------LGMNVIA-HDPY-APADKARAVGVE-----LVSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~g-ktvGIIGlG~IG~~vA~~lk~------~G~~Vi~-~d~~-~~~~~a~~~g~~-----~~~l~ell~~aDvV~l~~ 291 (656)
-+.| |+|+|||||..|++=|..||. .|.+|++ ..+. .+.+.|++.|.+ ..+.+|++++||+|.+.+
T Consensus 40 ~~kg~KkIaViGYGsQG~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLl 119 (226)
T d1qmga2 40 AFKGIKQIGVIGWGSQAPAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLI 119 (226)
T ss_dssp HTTTCSEEEEECCSSHHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECS
T ss_pred HhcCCCEEEEEEeccHHHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEec
Confidence 3678 999999999999999999997 5577654 4444 478889999986 557999999999999999
Q ss_pred CCCccccccccHHHHhcCCCCcEEEE
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVN 317 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailIN 317 (656)
|... -..++ ++....||+|..|.-
T Consensus 120 PDe~-Q~~vy-~~I~p~Lk~G~~L~F 143 (226)
T d1qmga2 120 SDSA-QADNY-EKVFSHMKPNSILGL 143 (226)
T ss_dssp CHHH-HHHHH-HHHHHHSCTTCEEEE
T ss_pred chHH-HHHHH-HHHHHhcCCCceeee
Confidence 9433 34455 467788999988754
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.5e-06 Score=78.18 Aligned_cols=123 Identities=17% Similarity=0.169 Sum_probs=82.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHH-----------HcC------------------Cee-cCHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKAR-----------AVG------------------VEL-VSFD 278 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~-----------~~g------------------~~~-~~l~ 278 (656)
|+|+|||.|.||+.+|..+...|++|+.||++.. .+.+. +.+ +.. .++.
T Consensus 5 kkvaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~ 84 (192)
T d1f0ya2 5 KHVTVIGGGLMGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAA 84 (192)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHH
T ss_pred EEEEEECcCHHHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhH
Confidence 6999999999999999999999999999998752 11111 011 112 3778
Q ss_pred HHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCcc
Q 006212 279 QALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKL 357 (656)
Q Consensus 279 ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L 357 (656)
+.+++||+|+=|+|...+.+.-+-.+.-..++++++|....++-. ...+...+.. .++ .+++.| .|+ .-.||
T Consensus 85 ~a~~~ad~ViEav~E~l~~K~~v~~~l~~~~~~~~ilasnTS~l~--i~~la~~~~~p~r~--ig~Hff--nP~-~~~~l 157 (192)
T d1f0ya2 85 SVVHSTDLVVEAIVENLKVKNELFKRLDKFAAEHTIFASNTSSLQ--ITSIANATTRQDRF--AGLHFF--NPV-PVMKL 157 (192)
T ss_dssp HHTTSCSEEEECCCSCHHHHHHHHHHHTTTSCTTCEEEECCSSSC--HHHHHTTSSCGGGE--EEEEEC--SST-TTCCE
T ss_pred hhhcccceehhhcccchhHHHHHHHHHhhhcccCceeeccCcccc--cchhhhhccCHhHE--Eeeccc--ccc-CcccE
Confidence 899999999999997766555444444445799988876655443 3445555544 355 555655 332 23466
Q ss_pred cc
Q 006212 358 VQ 359 (656)
Q Consensus 358 ~~ 359 (656)
.+
T Consensus 158 VE 159 (192)
T d1f0ya2 158 VE 159 (192)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=98.12 E-value=3.6e-06 Score=77.74 Aligned_cols=92 Identities=24% Similarity=0.361 Sum_probs=70.5
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC--ChhHHHHcCCeec---CHHHHhccCCEEEEccCCCccccc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PADKARAVGVELV---SFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~--~~~~a~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+.++++.|||.|.||+.+++.|...|. ++.+++|.. ....+.+.|.... ++.+.+.++|+|+.|++. ...
T Consensus 21 ~l~~~~ilviGaG~~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss---~~~ 97 (159)
T d1gpja2 21 SLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAA---PHP 97 (159)
T ss_dssp CCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSS---SSC
T ss_pred CcccCeEEEECCCHHHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCC---CCc
Confidence 6899999999999999999999999998 699999874 2345566676544 567778899999999873 355
Q ss_pred cccHHHHhcC------CCCcEEEEcCC
Q 006212 300 IFNDETFAKM------KKGVRIVNVAR 320 (656)
Q Consensus 300 li~~~~l~~m------K~gailINvaR 320 (656)
+++.+.++.. ++..+++|.+.
T Consensus 98 ii~~~~i~~~~~~r~~~~~~~iiDlav 124 (159)
T d1gpja2 98 VIHVDDVREALRKRDRRSPILIIDIAN 124 (159)
T ss_dssp CBCHHHHHHHHHHCSSCCCEEEEECCS
T ss_pred cccHhhhHHHHHhcccCCCeEEEeecC
Confidence 6777666421 23458888774
|
| >d2iafa1 d.81.2.1 (A:4-148) L-serine dehydratase SdhL, N-terminal domain {Legionella pneumophila [TaxId: 446]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: FwdE/GAPDH domain-like superfamily: Serine metabolism enzymes domain family: Serine dehydratase beta chain-like domain: L-serine dehydratase SdhL, N-terminal domain species: Legionella pneumophila [TaxId: 446]
Probab=98.02 E-value=3e-06 Score=77.10 Aligned_cols=111 Identities=8% Similarity=-0.096 Sum_probs=70.3
Q ss_pred chHHHHHHHhHHHHHhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhH-----------
Q 006212 416 PYVVLAKKLGRLAVQLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFT----------- 484 (656)
Q Consensus 416 p~~~laerlG~l~~qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~i----------- 484 (656)
|......-+..|..+...+ .+.+|++.++||++ .+..+|++|+|++.||++ +..++++..++..+
T Consensus 7 PmrAa~~F~~~l~~~~~~~--~~~~v~v~LyGSLa-~TG~GHgTD~Av~~GL~G-~~P~~~d~~~~~~~~~~i~~~~~l~ 82 (145)
T d2iafa1 7 PMLAANAFLQLLEQKNLFD--KTQRVKVELYGSLA-LTGKGHGTDKAILNGLEN-KAPETVDPASMIPRMHEILDSNLLN 82 (145)
T ss_dssp HHHHHHHHHHHHHHTTCTT--TCCEEEEEEEHHHH-HTCTTSSHHHHHHHHTTT-CCCC-----CHHHHHHHHHHHTEEE
T ss_pred HHHHHHHHHHHHHhCcccC--CccEEEEEEehhhh-hcCCccCccHHHHhhccC-CCccccChhhhHHHHHHHHhcCccc
Confidence 4443333355555554444 78999999999999 999999999999999994 44444554444332
Q ss_pred -------hhccCceEEEEEeecCCCCCCCCceEEEEEEecccccceecCCCcE-EEEEEEEEC-Cee
Q 006212 485 -------AKQKGLRISEERVVADSSPEFPIDSIQVQLSNVDSKFAAAVSENGE-ISIEGKVKF-GIP 542 (656)
Q Consensus 485 -------Ake~GI~v~~~~~~~~~~~~~~~ntv~i~l~~~~~~~~~~~~~~~~-~~v~Gt~~g-G~~ 542 (656)
+-+.+.++.|...+.- ..|||++++++.+ .++.. .+.+..|+| |-+
T Consensus 83 l~~~~~i~f~~~~di~f~~~~~l---p~HpNgm~f~a~d---------~~g~~l~~~tyySIGGGFI 137 (145)
T d2iafa1 83 LAGKKEIPFHEATDFLFLQKELL---PKHSNGMRFSAFD---------GNANLLIEQVYYSIGGGFI 137 (145)
T ss_dssp ETTTEEEECCHHHHEEEETTCCC---SSCSSEEEEEEEC---------TTSCEEEEEEEEECSSSCE
T ss_pred ccccccccccccccceecccccC---CCCCCccEEEEEC---------CCCCEEEEEEEEEcCCeEE
Confidence 2222334555433322 2799999999973 33343 478899998 444
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=98.01 E-value=2.5e-06 Score=73.95 Aligned_cols=91 Identities=14% Similarity=0.021 Sum_probs=69.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH---HHcCCeec---CHHHHhccCCEEEEccCCCccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA---RAVGVELV---SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a---~~~g~~~~---~l~ell~~aDvV~l~~Plt~~T 297 (656)
-.+|+||+++|||.|.+|.+-|+.|..+|++|+++++....+.. .+.++.+. --++.+..+++|+.+...
T Consensus 7 ~l~l~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d---- 82 (113)
T d1pjqa1 7 FCQLRDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDD---- 82 (113)
T ss_dssp EECCBTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSC----
T ss_pred EEEeCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCC----
Confidence 35899999999999999999999999999999999988754332 22233322 123457889999887652
Q ss_pred cccccHHHHhcCCCCcEEEEcC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINva 319 (656)
..+|.+....+|+..++||++
T Consensus 83 -~~~n~~i~~~a~~~~ilVNv~ 103 (113)
T d1pjqa1 83 -DTVNQRVSDAAESRRIFCNVV 103 (113)
T ss_dssp -HHHHHHHHHHHHHTTCEEEET
T ss_pred -HHHHHHHHHHHHHcCCEEEeC
Confidence 236777777888888999986
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=97.92 E-value=7e-06 Score=77.52 Aligned_cols=130 Identities=18% Similarity=0.214 Sum_probs=86.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHH-----------cC-------------CeecCHHHHhccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARA-----------VG-------------VELVSFDQALATA 284 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~-----------~g-------------~~~~~l~ell~~a 284 (656)
|+|+|||.|.||+.+|..+...|++|..||++.. .+.+.+ .+ +...+..+.+.+|
T Consensus 5 ~~vaViGaG~mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~a 84 (186)
T d1wdka3 5 KQAAVLGAGIMGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYGDFGNV 84 (186)
T ss_dssp SSEEEECCHHHHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSSTTGGGC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeeccccccccccc
Confidence 5799999999999999999999999999998752 121111 11 0112222347899
Q ss_pred CEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhc-CCeEEEEeeccCCCCCCCCCccccCCcE
Q 006212 285 DFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDS-GVVAQAALDVFTEEPPAKDSKLVQHENV 363 (656)
Q Consensus 285 DvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~-g~i~gA~lDV~~~EP~~~~~~L~~~~nv 363 (656)
|+|+=++|.+.+.+.-+-.+.-+.++++++|....++-. ...|.+.+.. .++ .+++.|. |+ ...||.| +
T Consensus 85 dlViEav~E~l~~K~~lf~~l~~~~~~~~IiaSnTS~l~--i~~la~~~~~p~r~--~g~Hf~n--P~-~~~~lVE---i 154 (186)
T d1wdka3 85 DLVVEAVVENPKVKQAVLAEVENHVREDAILASNTSTIS--ISLLAKALKRPENF--VGMHFFN--PV-HMMPLVE---V 154 (186)
T ss_dssp SEEEECCCSCHHHHHHHHHHHHTTSCTTCEEEECCSSSC--HHHHGGGCSCGGGE--EEEECCS--ST-TTCCEEE---E
T ss_pred ceeeeeecchHHHHHHHHHHHHhhcCCCeeEEecccccc--HHHHHHhccCchhe--Eeecccc--Cc-ccCCeEE---E
Confidence 999999998877666555555566899999987766544 3555555543 355 4555543 32 2356765 5
Q ss_pred EEcCCC
Q 006212 364 TVTPHL 369 (656)
Q Consensus 364 ilTPH~ 369 (656)
+-+|+.
T Consensus 155 v~~~~T 160 (186)
T d1wdka3 155 IRGEKS 160 (186)
T ss_dssp EECSSC
T ss_pred CCCCCC
Confidence 566653
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.76 E-value=5.1e-05 Score=72.09 Aligned_cols=94 Identities=17% Similarity=0.210 Sum_probs=64.3
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH--------------------HHcC-C-eecCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--------------------RAVG-V-ELVSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a--------------------~~~g-~-~~~~l~ell~~aDvV 287 (656)
++|+|||+|.+|..+|..+...|++|++||.+...-.. ...+ . ...++++.++.||++
T Consensus 1 MkI~ViGlG~vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i 80 (202)
T d1mv8a2 1 MRISIFGLGYVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVS 80 (202)
T ss_dssp CEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEE
T ss_pred CEEEEECCCHhHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEE
Confidence 47999999999999999999999999999975311100 0111 1 123788999999999
Q ss_pred EEccCCCccccc----------ccc--HHHHhcCCCCcEEEEcCCCchh
Q 006212 288 SLHMPLNPTTSK----------IFN--DETFAKMKKGVRIVNVARGGVI 324 (656)
Q Consensus 288 ~l~~Plt~~T~~----------li~--~~~l~~mK~gailINvaRg~iv 324 (656)
++|+| ||.... .++ ...+...+++.++|-.+...+=
T Consensus 81 ~i~Vp-TP~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pG 128 (202)
T d1mv8a2 81 FICVG-TPSKKNGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPG 128 (202)
T ss_dssp EECCC-CCBCTTSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTT
T ss_pred EEecC-ccccccccccchhhhhhhhhhhheeecccCCcceeeccccCCc
Confidence 99999 442111 111 1233446788999998875443
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.72 E-value=4.2e-05 Score=71.24 Aligned_cols=95 Identities=22% Similarity=0.198 Sum_probs=66.2
Q ss_pred cccccccCCCEEEEEecChh-HHHHHHHHhcCCCEEEEECCCCChhHHHHc-------CCe---e---cCHHHHhccCCE
Q 006212 221 KYVGVSLVGKTLAVMGFGKV-GSEVARRAKGLGMNVIAHDPYAPADKARAV-------GVE---L---VSFDQALATADF 286 (656)
Q Consensus 221 ~~~g~~l~gktvGIIGlG~I-G~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~-------g~~---~---~~l~ell~~aDv 286 (656)
...|.+++||++.|||-+.| |+++|..|...|..|..++........... +.. . ..+.+...++|+
T Consensus 21 ~~~g~~l~GK~vvVIGrS~iVG~Pla~lL~~~gaTVt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDI 100 (171)
T d1edza1 21 LPEGNRLYGKKCIVINRSEIVGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDV 100 (171)
T ss_dssp SCTTCTTTTCEEEEECCCTTTHHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSE
T ss_pred ccccCCCCCCEEEEECCccccHHHHHHHHHHCCCEEEEeccccccccccccceeeeeeccccccccchhHHhhccccCCE
Confidence 34578999999999999875 999999999999999988754211100000 000 0 126778889999
Q ss_pred EEEccCCCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 287 ISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 287 V~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
|+.++|... ..+..+ ..|+|+++||+|-.
T Consensus 101 vIsavG~p~---~~i~~d---~ik~GavvIDvGi~ 129 (171)
T d1edza1 101 VITGVPSEN---YKFPTE---YIKEGAVCINFACT 129 (171)
T ss_dssp EEECCCCTT---CCBCTT---TSCTTEEEEECSSS
T ss_pred EEEccCCCc---cccChh---hcccCceEeecccc
Confidence 999998332 113333 25999999999854
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=97.71 E-value=9.6e-05 Score=71.95 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=82.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-Ch-hHHHHcCCeecCHHHHhc-cCCEEEEccCCCcccccc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PA-DKARAVGVELVSFDQALA-TADFISLHMPLNPTTSKI 300 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~-~~a~~~g~~~~~l~ell~-~aDvV~l~~Plt~~T~~l 300 (656)
..+|.||||.|-|+|++|+.+|+.|...|++|++.|.+. .. ......|....+.++++. .||+++-|. ..+.
T Consensus 34 ~~~l~g~~v~IqG~GnVG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~cDIl~PcA-----~~~~ 108 (230)
T d1leha1 34 SDSLEGLAVSVQGLGNVAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVAPNAIYGVTCDIFAPCA-----LGAV 108 (230)
T ss_dssp SCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECCGGGTTTCCCSEEEECS-----CSCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccCCcccccccccEecccc-----cccc
Confidence 356999999999999999999999999999999999875 22 233446777778888765 799999887 3567
Q ss_pred ccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 301 FNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
|+++...+++- .+|+-.+-.++.+.++.. .|.+..|
T Consensus 109 I~~~~~~~l~a-k~Ive~ANn~~t~~ea~~-~L~~rGI 144 (230)
T d1leha1 109 LNDFTIPQLKA-KVIAGSADNQLKDPRHGK-YLHELGI 144 (230)
T ss_dssp BSTTHHHHCCC-SEECCSCSCCBSSHHHHH-HHHHHTC
T ss_pred cChHHhhccCc-cEEEecccCCCCCchHHH-HHHhhCc
Confidence 88888888864 367777777787655543 3444333
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=97.68 E-value=2.2e-05 Score=65.52 Aligned_cols=69 Identities=23% Similarity=0.218 Sum_probs=49.8
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHH--HHcCCeec--C-HHHHhccCCEEEEccCCCc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKA--RAVGVELV--S-FDQALATADFISLHMPLNP 295 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a--~~~g~~~~--~-l~ell~~aDvV~l~~Plt~ 295 (656)
+++||+|.|+|+|..|.++|+.|...|++|+++|........ ...+.... . -++.+.+.|+|++. |.-+
T Consensus 2 ~~~~K~v~ViGlG~sG~s~a~~L~~~g~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~S-PGi~ 75 (93)
T d2jfga1 2 DYQGKNVVIIGLGLTGLSCVDFFLARGVTPRVMDTRMTPPGLDKLPEAVERHTGSLNDEWLMAADLIVAS-PGIA 75 (93)
T ss_dssp CCTTCCEEEECCSHHHHHHHHHHHHTTCCCEEEESSSSCTTGGGSCTTSCEEESBCCHHHHHHCSEEEEC-TTSC
T ss_pred CcCCCEEEEEeECHHHHHHHHHHHHCCCEEEEeeCCcCchhHHHHhhccceeecccchhhhccCCEEEEC-CCCC
Confidence 578999999999999999999999999999999976532211 11223221 2 25567899999874 4344
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=97.67 E-value=2.1e-05 Score=71.35 Aligned_cols=90 Identities=16% Similarity=0.121 Sum_probs=64.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCC--------eecCHHHHhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGV--------ELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~--------~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
++|+|||.|.||..+|..|...|.+|..+++.... ......+. ...+..+.+..+|+|+++++ ..++...
T Consensus 1 MkI~IiGaG~iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vk-a~~~~~~ 79 (167)
T d1ks9a2 1 MKITVLGCGALGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLK-AWQVSDA 79 (167)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSC-GGGHHHH
T ss_pred CEEEEECcCHHHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeec-ccchHHH
Confidence 47999999999999999999999999999987532 11111111 11245677889999999999 3445444
Q ss_pred ccHHHHhcCCCCcEEEEcCCC
Q 006212 301 FNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaRg 321 (656)
+ +.....+++++.++.+.-|
T Consensus 80 ~-~~l~~~~~~~~~Iv~~qNG 99 (167)
T d1ks9a2 80 V-KSLASTLPVTTPILLIHNG 99 (167)
T ss_dssp H-HHHHTTSCTTSCEEEECSS
T ss_pred H-HhhccccCcccEEeeccCc
Confidence 3 3334456788888888655
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.57 E-value=4.9e-05 Score=70.97 Aligned_cols=91 Identities=16% Similarity=0.273 Sum_probs=62.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHc---------CC-------e-ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAV---------GV-------E-LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~---------g~-------~-~~~l~ell~~aDvV~l~~P 292 (656)
++|+|||.|.+|.++|..|...|.+|..|.+....+..... +. . ..++++++++||+|++++|
T Consensus 1 MkI~ViGaG~~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avp 80 (180)
T d1txga2 1 MIVSILGAGAMGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVS 80 (180)
T ss_dssp CEEEEESCCHHHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSC
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccc
Confidence 47999999999999999999889999999764333222211 11 1 1378999999999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCCch
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARGGV 323 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg~i 323 (656)
....+.++. +....+++. .++.++.|..
T Consensus 81 -s~~~~~~~~-~l~~~l~~~-~ii~~tkg~~ 108 (180)
T d1txga2 81 -TDGVLPVMS-RILPYLKDQ-YIVLISKGLI 108 (180)
T ss_dssp -GGGHHHHHH-HHTTTCCSC-EEEECCCSEE
T ss_pred -hhhhHHHHH-hhccccccc-eecccccCcc
Confidence 444444442 334445655 5556666653
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00013 Score=67.74 Aligned_cols=84 Identities=19% Similarity=0.286 Sum_probs=66.8
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.+++||++.|||-+. +|+.+|..|...|..|..++.+.. ++.+.+++||+|+.+++. .+++
T Consensus 33 ~~i~l~Gk~vvVIGrS~iVGrPLa~lL~~~gatVt~~~~~t~------------~l~~~~~~aDivi~a~G~----~~~i 96 (170)
T d1a4ia1 33 TGVPIAGRHAVVVGRSKIVGAPMHDLLLWNNATVTTCHSKTA------------HLDEEVNKGDILVVATGQ----PEMV 96 (170)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHHTTCEEEEECTTCS------------SHHHHHTTCSEEEECCCC----TTCB
T ss_pred hCcccccceEEEEecCCccchHHHHHHHhccCceEEEecccc------------cHHHHHhhccchhhcccc----cccc
Confidence 47899999999999986 899999999999999999986531 356778899999999983 3456
Q ss_pred cHHHHhcCCCCcEEEEcCCCchhc
Q 006212 302 NDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaRg~ivd 325 (656)
..+. .|+|+++||++-..+.|
T Consensus 97 ~~~~---vk~g~iviDvgi~~~~~ 117 (170)
T d1a4ia1 97 KGEW---IKPGAIVIDCGINYVPD 117 (170)
T ss_dssp CGGG---SCTTCEEEECCCBC---
T ss_pred cccc---ccCCCeEeccCcccccc
Confidence 5543 69999999998544433
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.53 E-value=0.0013 Score=61.35 Aligned_cols=132 Identities=14% Similarity=0.142 Sum_probs=82.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCC-------------------e-ecCHHHHhccCCEEEE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV-------------------E-LVSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~-------------------~-~~~l~ell~~aDvV~l 289 (656)
++|+|||+|.+|..+|..+ +.|++|++||.+...-.....|. . ..+......++|++++
T Consensus 1 MkI~ViGlG~vGl~~a~~~-a~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v 79 (196)
T d1dlja2 1 MKIAVAGSGYVGLSLGVLL-SLQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVII 79 (196)
T ss_dssp CEEEEECCSHHHHHHHHHH-TTTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEE
T ss_pred CEEEEECCChhHHHHHHHH-HCCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccc
Confidence 4799999999999999877 56999999997642211111111 1 1245666789999999
Q ss_pred ccCCCccccc-cccH-------HHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCeEEEEeeccCCCCCCCCC---ccc
Q 006212 290 HMPLNPTTSK-IFND-------ETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVVAQAALDVFTEEPPAKDS---KLV 358 (656)
Q Consensus 290 ~~Plt~~T~~-li~~-------~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~EP~~~~~---~L~ 358 (656)
|+|....... .... +.+...+++.+++--+.-.+=..+.+..-+.+.++. |-+|-....+ .+.
T Consensus 80 ~vpt~~~~~~~~~~~~~v~~~~~~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~~~~------~~PE~i~~G~ai~d~~ 153 (196)
T d1dlja2 80 ATPTNYNSRINYFDTQHVETVIKEVLSVNSHATLIIKSTIPIGFITEMRQKFQTDRII------FSPEFLRESKALYDNL 153 (196)
T ss_dssp CCCCCEETTTTEECCHHHHHHHHHHHHHCSSCEEEECSCCCTTHHHHHHHHTTCSCEE------ECCCCCCTTSTTHHHH
T ss_pred cCCccccccCCCcceeEEeehhhhhhhcccceeEEeeeecCceeeeeeeeccchhhhc------cchhhcchhhhHhhcc
Confidence 9995433222 1111 122335677888887776555666776666666552 4556543333 345
Q ss_pred cCCcEEEcCC
Q 006212 359 QHENVTVTPH 368 (656)
Q Consensus 359 ~~~nvilTPH 368 (656)
..+++|+--+
T Consensus 154 ~p~riv~G~~ 163 (196)
T d1dlja2 154 YPSRIIVSCE 163 (196)
T ss_dssp SCSCEEEECC
T ss_pred CCCEEEEeCC
Confidence 5677765544
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.0001 Score=68.12 Aligned_cols=79 Identities=14% Similarity=0.267 Sum_probs=65.9
Q ss_pred cccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhccCCEEEEccCCCccccccc
Q 006212 223 VGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALATADFISLHMPLNPTTSKIF 301 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~~T~~li 301 (656)
.+.++.||++.|||-+. +|+.+|..|...|++|..++.+. .++.+.+++||+|+.++.. .+++
T Consensus 31 y~i~l~GK~v~VIGrS~~VG~Pla~lL~~~gatVt~~h~~t------------~~l~~~~~~ADivI~a~G~----p~~i 94 (166)
T d1b0aa1 31 YNIDTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFT------------KNLRHHVENADLLIVAVGK----PGFI 94 (166)
T ss_dssp TTCCCTTCEEEEECCCTTTHHHHHHHHHTTTCEEEEECSSC------------SCHHHHHHHCSEEEECSCC----TTCB
T ss_pred cCcccccceEEEEeccccccHHHHHHHHHhhcccccccccc------------chhHHHHhhhhHhhhhccC----cccc
Confidence 46789999999999998 89999999999999999887543 1467778999999999983 3556
Q ss_pred cHHHHhcCCCCcEEEEcCC
Q 006212 302 NDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 302 ~~~~l~~mK~gailINvaR 320 (656)
..+. +|+|+++||++-
T Consensus 95 ~~~~---vk~g~vvIDvGi 110 (166)
T d1b0aa1 95 PGDW---IKEGAIVIDVGI 110 (166)
T ss_dssp CTTT---SCTTCEEEECCC
T ss_pred cccc---cCCCcEEEecCc
Confidence 6543 599999999983
|
| >d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Nitrosomonas europaea [TaxId: 915]
Probab=97.49 E-value=6.2e-05 Score=60.81 Aligned_cols=70 Identities=16% Similarity=0.231 Sum_probs=58.2
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC--CCCHHHHHHHhcCCCccEEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE--EPNQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~--~~~~e~l~~L~~~~~V~~v~ 628 (656)
|+|.+...|+||++++|++++...|+||..+.++..+..+-+-|.|.++. +.-+.+.++|.++..|.+|.
T Consensus 3 ~tisv~veN~pGvL~Ris~lF~rRg~NI~Sltv~~te~~~iSRmtivv~~~~~~i~qi~kQL~KlvdVi~V~ 74 (77)
T d2pc6a2 3 HIISLLMENEAGALSRVAGLFSARGYNIESLSVAPTEDPTLSRMTLVTNGPDEIVEQITKQLNKLIEVVKLI 74 (77)
T ss_dssp EEEEEEEECSTTHHHHHHHHHHHHTCCCCEEEEEECSSTTEEEEEEEEEECHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECCccHHHHHHHHHhccCcceEEEEEeccCCCCeEEEEEEEECCHHHHHHHHHHHhCCcCEEEEE
Confidence 67778889999999999999999999999999999887777767666554 33336888889998887775
|
| >d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Escherichia coli [TaxId: 562]
Probab=97.49 E-value=9.7e-05 Score=59.50 Aligned_cols=70 Identities=13% Similarity=0.181 Sum_probs=55.8
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCC--CHHHHHHHhcCCCccEEE
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEP--NQDSLKEIGKVPAIEEYT 628 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~--~~e~l~~L~~~~~V~~v~ 628 (656)
|+|-+...|+||++++|+.++...++||..+.++..+..+.+=|.|.+.... -+.+.++|.++..|.+|.
T Consensus 2 htlsv~v~N~~GVL~RisglF~rRg~NI~Sl~v~~te~~~iSR~tivv~~~~~~i~qi~kQL~KlidV~~V~ 73 (76)
T d2f1fa1 2 RILSVLLENESGALSRVIGLFSQRGYNIESLTVAPTDDPTLSRMTIQTVGDEKVLEQIEKQLHKLVDVLRVS 73 (76)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHTTTCCCSEEEEEECSCSSEEEEEEEEESCHHHHHHHHHHHHHSTTEEEEE
T ss_pred EEEEEEEECCCcHHHHHHHHHHhcCcceEEEEEcccCCCCeeEEEEEEECCHHHHHHHHHHHhCCCCEEEEE
Confidence 5677788999999999999999999999999999887666665655554432 225778888888888775
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=97.49 E-value=4.7e-05 Score=67.04 Aligned_cols=67 Identities=18% Similarity=0.349 Sum_probs=51.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec--------CHHHH-hccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV--------SFDQA-LATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~--------~l~el-l~~aDvV~l~~Plt~~ 296 (656)
|++.|+|+|++|+.+|+.|...|.+|+++|.+. ..+.+.+.|.... .|+++ +.+||.+++++|...+
T Consensus 1 k~~iIiG~G~~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~ 77 (134)
T d2hmva1 1 KQFAVIGLGRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQ 77 (134)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHH
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHH
Confidence 678999999999999999999999999999875 2333444554321 24444 7899999999985543
|
| >d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: IlvH-like domain: Acetolactate synthase small subunit, IlvH species: Thermotoga maritima [TaxId: 2336]
Probab=97.46 E-value=0.00014 Score=58.80 Aligned_cols=72 Identities=19% Similarity=0.285 Sum_probs=58.1
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeC--CCCCHHHHHHHhcCCCccEEEE
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVD--EEPNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D--~~~~~e~l~~L~~~~~V~~v~~ 629 (656)
.|+|-+...|+||++++|+.++...|+||..+.++..+..+..=|.|.++ +..-+.+.++|.++..|.+|.-
T Consensus 3 ~~tisvlv~n~pGvL~Ri~~lF~rRg~NI~SL~v~~te~~~iSR~tivv~g~~~~i~qi~kQl~KlidV~~V~d 76 (78)
T d2fgca2 3 EHLVSMLVHNKPGVMRKVANLFARRGFNISSITVGESETPGLSRLVIMVKGDDKTIEQIEKQAYKLVEVVKVTP 76 (78)
T ss_dssp EEEEEEEEECCTTHHHHHHHHHHTTTCEEEEEEEEECSSTTEEEEEEEEEECTTHHHHHHHHHTTSTTEEEEEE
T ss_pred eEEEEEEEeCCCcHHHHHHHHHhhCCcceEEEEEeecCCCCeEEEEEEEEcCHHHHHHHHHHHhCCcCEEEEEe
Confidence 46777888999999999999999999999999999887777665555444 4434478888999988888753
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.46 E-value=1.9e-05 Score=74.72 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=63.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHHHHc--------CC------ee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKARAV--------GV------EL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a~~~--------g~------~~-~~l~ell~~aDvV~l~~Pl 293 (656)
++|+|||.|.+|.++|..|...|.+|..|+++.. .+..... ++ .. .++++++++||+|++++|
T Consensus 8 ~KI~ViGaG~wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavP- 86 (189)
T d1n1ea2 8 NKAVVFGSGAFGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIP- 86 (189)
T ss_dssp EEEEEECCSHHHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSC-
T ss_pred ceEEEECCCHHHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCc-
Confidence 5799999999999999999988999999987641 1111111 12 22 279999999999999999
Q ss_pred CccccccccHHH----HhcCCCCcEEEEcCCC
Q 006212 294 NPTTSKIFNDET----FAKMKKGVRIVNVARG 321 (656)
Q Consensus 294 t~~T~~li~~~~----l~~mK~gailINvaRg 321 (656)
+...+.++..-. ....+++..+++++.|
T Consensus 87 s~~~~~~~~~~~~~~~~~~~~~~~~ii~~tKG 118 (189)
T d1n1ea2 87 TQFLRGFFEKSGGNLIAYAKEKQVPVLVCTKG 118 (189)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHTCCEEECCCS
T ss_pred HHHHHHHHHHHHhhhhhhhccCCcEEEEEECC
Confidence 433443332210 0123567789999877
|
| >d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: AF1403 N-terminal domain-like domain: Hypothetical protein AF1403, N-terminal domain species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.38 E-value=0.00014 Score=58.77 Aligned_cols=70 Identities=14% Similarity=0.108 Sum_probs=48.7
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccC-ccEEEEEEe--CCCCCHHHHHHHhcCCCccEEEE
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRR-NHGIMAIGV--DEEPNQDSLKEIGKVPAIEEYTL 629 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~g-g~al~~i~~--D~~~~~e~l~~L~~~~~V~~v~~ 629 (656)
.|-+...|+||+++.|+++++++++||..++......| ....+.+.+ .+.-=+.++++|+++|+|.+|..
T Consensus 3 ~i~i~~~Dr~GlL~di~~~ia~~~~NI~~i~~~~~~~g~~~~~~~i~v~~~~~~l~~ll~kL~~l~~V~~Ver 75 (77)
T d1y7pa2 3 GLRIIAENKIGVLRDLTTIIAEEGGNITFAQTFLIKHGEHEGKALIYFEIEGGDFEKILERVKTFDYIIEIEE 75 (77)
T ss_dssp EEEEEEECCTTHHHHHHHHCC----CEEEEEEEECCSSTTTTEEEEEEEECSSCHHHHHHHHHTCTTEEEEEE
T ss_pred eEEEEEecCCChHHHHHHHHHHcCCCeEEEEeeccCCCeEEEEEEEEEEcCcccHHHHHHHHHcCCCeeEEEe
Confidence 35677899999999999999999999999987543322 233445544 33223589999999999999863
|
| >d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.04 E-value=0.00044 Score=54.78 Aligned_cols=56 Identities=16% Similarity=0.202 Sum_probs=47.1
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~ 620 (656)
|-|..+|+||.++++.++|+++||||..|-.+.. ++.+++++.+|++ +.+.+.|++
T Consensus 2 iaV~v~d~pG~L~~v~~~L~~~~InI~~~y~~~~--~~~~~~vl~vdd~--~~a~~~L~~ 57 (71)
T d2f06a1 2 VGISCPNVPGALAKVLGFLSAEGVFIEYMYSFAN--NNVANVVIRPSNM--DKCIEVLKE 57 (71)
T ss_dssp EEEEEESSTTHHHHHHHHHHHTTCCEEEEEEEEE--TTEEEEEEEESCH--HHHHHHHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCCCCEEEEEEEcC--CCcEEEEEEECCH--HHHHHHHHH
Confidence 4467899999999999999999999999999865 4789999999853 566777665
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=97.04 E-value=0.00052 Score=62.36 Aligned_cols=63 Identities=13% Similarity=0.190 Sum_probs=48.6
Q ss_pred EEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCCeec-CHHHHhccCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAP--ADKARAVGVELV-SFDQALATADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~~~~-~l~ell~~aDvV~l~~Pl 293 (656)
+|||||+|.+|+. .+..++.. ++++++ +|+... ...+...++.+. ++++++++.|+|++|+|.
T Consensus 3 ri~iIG~G~~g~~~~~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~ 71 (164)
T d1tlta1 3 RIGVVGLGGIAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSST 71 (164)
T ss_dssp EEEEECCSTHHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCT
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccc
Confidence 7999999999987 46667755 788765 788763 234556677654 789999999999999993
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.00041 Score=63.44 Aligned_cols=89 Identities=22% Similarity=0.318 Sum_probs=63.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCee-cC-------HHHHhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVEL-VS-------FDQALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~-~~-------l~ell~~aDvV~l~~Plt~~T~ 298 (656)
.|.+|.|+|.|.+|...++.++.+|++|++.|++. ..+.++++|+.. ++ .+......|+++.|+......
T Consensus 27 ~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~~~~- 105 (168)
T d1piwa2 27 PGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSLTDI- 105 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCSTTC-
T ss_pred CCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCCccc-
Confidence 58999999999999999999999999999999876 567788888732 11 223345578887776532211
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
.+ ...+..++++..++.++
T Consensus 106 -~~-~~~~~~l~~~G~iv~~G 124 (168)
T d1piwa2 106 -DF-NIMPKAMKVGGRIVSIS 124 (168)
T ss_dssp -CT-TTGGGGEEEEEEEEECC
T ss_pred -hH-HHHHHHhhccceEEEec
Confidence 11 23455677777777775
|
| >d1bgva1 c.2.1.7 (A:195-449) Glutamate dehydrogenase {Clostridium symbiosum [TaxId: 1512]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Clostridium symbiosum [TaxId: 1512]
Probab=96.97 E-value=0.0014 Score=64.46 Aligned_cols=98 Identities=28% Similarity=0.375 Sum_probs=63.0
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEE--------ECCCC-ChhH-------------------HHHcCCeec
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIA--------HDPYA-PADK-------------------ARAVGVELV 275 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~--------~d~~~-~~~~-------------------a~~~g~~~~ 275 (656)
+.+|.|||+.|=|+|++|+.+|+.|...|++|++ |||.- +.+. +...+.+..
T Consensus 31 ~~~l~g~~v~IQGfGnVG~~~a~~L~e~GakvvavsD~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (255)
T d1bgva1 31 NDTLVGKTVALAGFGNVAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFGVQFF 110 (255)
T ss_dssp TCCSTTCEEEECCSSHHHHHHHHHHHHHTCEEEEEEETTEEEECTTCSCSHHHHHHHHHHHHHCCCCTHHHHHHHTCEEE
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCceEecCCCCCHHHHHHHHHHHhhhcCcchhhhhhhcCceee
Confidence 4578999999999999999999999999999986 45542 2111 111223333
Q ss_pred CHHHHh-ccCCEEEEccCCCccccccccHHHHhcCCC-Cc-EEEEcCCCchhcH
Q 006212 276 SFDQAL-ATADFISLHMPLNPTTSKIFNDETFAKMKK-GV-RIVNVARGGVIDE 326 (656)
Q Consensus 276 ~l~ell-~~aDvV~l~~Plt~~T~~li~~~~l~~mK~-ga-ilINvaRg~ivde 326 (656)
+.++++ .+||+++-|. +.+.|+.+...+++. ++ +|+--+-+++-++
T Consensus 111 ~~~~~~~~~~DiliPcA-----~~~~I~~~~a~~l~a~~ck~I~EgAN~p~t~e 159 (255)
T d1bgva1 111 PGEKPWGQKVDIIMPCA-----TQNDVDLEQAKKIVANNVKYYIEVANMPTTNE 159 (255)
T ss_dssp ETCCGGGSCCSEEECCS-----CTTCBCHHHHHHHHHTTCCEEECCSSSCBCHH
T ss_pred chhhcccccccEEeecc-----ccccccHHHHHhhhhcCceEEecCCCCCcchH
Confidence 333433 3688876553 455677776666643 34 5555556665444
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.93 E-value=0.00096 Score=60.88 Aligned_cols=88 Identities=23% Similarity=0.269 Sum_probs=65.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeec------CHHHHh--------ccCCEEEEcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFDQAL--------ATADFISLHM 291 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~------~l~ell--------~~aDvV~l~~ 291 (656)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.+++.|+..+ +..+.. ..+|+|+-|+
T Consensus 26 ~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~ 105 (171)
T d1pl8a2 26 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECT 105 (171)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECS
T ss_pred CCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEecc
Confidence 47799999999999999999999998 899999886 5567888887431 333322 2478988888
Q ss_pred CCCccccccccHHHHhcCCCCcEEEEcCC
Q 006212 292 PLNPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 292 Plt~~T~~li~~~~l~~mK~gailINvaR 320 (656)
+. +. .-+..++.++++..++-++-
T Consensus 106 G~-~~----~~~~a~~~~~~gG~iv~~G~ 129 (171)
T d1pl8a2 106 GA-EA----SIQAGIYATRSGGTLVLVGL 129 (171)
T ss_dssp CC-HH----HHHHHHHHSCTTCEEEECSC
T ss_pred CC-ch----hHHHHHHHhcCCCEEEEEec
Confidence 72 21 12445667888888888873
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=96.92 E-value=0.00048 Score=62.20 Aligned_cols=87 Identities=15% Similarity=0.187 Sum_probs=59.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHcCCee---------cCHHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAVGVEL---------VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~g~~~---------~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|+|.|||.|.||+.+|+.|...|.+|+++|++..... +...+... ..+++.+...|+++.++|....
T Consensus 1 ~~K~IliiGaG~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~ 80 (182)
T d1e5qa1 1 ATKSVLMLGSGFVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFH 80 (182)
T ss_dssp CCCEEEEECCSTTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhh
Confidence 379999999999999999999999999999999863222 22222110 1356678889999988884321
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
. ......++.++.+++.+
T Consensus 81 --~---~~~~~~~~~~~~~~~~~ 98 (182)
T d1e5qa1 81 --A---TVIKSAIRQKKHVVTTS 98 (182)
T ss_dssp --H---HHHHHHHHHTCEEECSS
T ss_pred --h---HHHHHHHhhccceeecc
Confidence 1 11122245566777765
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.87 E-value=0.001 Score=61.04 Aligned_cols=95 Identities=14% Similarity=0.127 Sum_probs=63.7
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChh--HHHHc---C-CeecCHHHH-hccCCEEEEccCCCc
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPAD--KARAV---G-VELVSFDQA-LATADFISLHMPLNP 295 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~--~a~~~---g-~~~~~l~el-l~~aDvV~l~~Plt~ 295 (656)
.+..+.||+|.|+|.|-.+++++..|...|.+|..++|+.... .+... + +...++++. ..++|+|+.|+|...
T Consensus 12 ~~~~~~~k~vlIlGaGGaarai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~ 91 (170)
T d1nyta1 12 LSFIRPGLRILLIGAGGASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGI 91 (170)
T ss_dssp HTCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGG
T ss_pred cCCCCCCCEEEEECCcHHHHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCc
Confidence 3567899999999999999999999999999999999875221 11111 1 233445443 467899999999653
Q ss_pred cccccccHHHHhcCCCCcEEEEcC
Q 006212 296 TTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 ~T~~li~~~~l~~mK~gailINva 319 (656)
... .....+..++++.+++|+-
T Consensus 92 ~~~--~~~~~~~~~~~~~~v~D~v 113 (170)
T d1nyta1 92 SGD--IPAIPSSLIHPGIYCYDMF 113 (170)
T ss_dssp GTC--CCCCCGGGCCTTCEEEESC
T ss_pred ccC--CCCCcHHHhccCcEEEEee
Confidence 211 1111233456666666664
|
| >d1gtma1 c.2.1.7 (A:181-419) Glutamate dehydrogenase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.87 E-value=0.0039 Score=60.55 Aligned_cols=105 Identities=26% Similarity=0.372 Sum_probs=70.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHh-cCCCEEEEE-CCCC--------ChhHHH----H-------cCCeecCHHHHhc-c
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAH-DPYA--------PADKAR----A-------VGVELVSFDQALA-T 283 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~-d~~~--------~~~~a~----~-------~g~~~~~l~ell~-~ 283 (656)
.|.||||.|-|+|++|+.+|+.|. .+|++|++. |.+. ..+... . .+.+.++.++++. +
T Consensus 29 ~l~g~~v~IqGfGnVG~~~a~~L~~~~G~kvv~vsD~~g~i~~~~G~d~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 108 (239)
T d1gtma1 29 TLKGKTIAIQGYGNAGYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEVLKWKNEHGSVKDFPGATNITNEELLELE 108 (239)
T ss_dssp CSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEEECSSCEEEEEEEECHHHHHHHHHHHSSSTTCTTSEEECHHHHHHSC
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHhcCcceeeccccccceecCCcCCHHHHHHHHHhccccccCCCCeeeccccccccc
Confidence 499999999999999999999885 689999875 4321 111111 1 1334556777664 7
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
||+++-|.- .+.|+.+...+++- .+|+-.+-+++..+ + .+.|.+..|
T Consensus 109 ~DIl~PcA~-----~~~I~~~~a~~i~a-k~I~e~AN~p~t~e-a-~~~L~~rgI 155 (239)
T d1gtma1 109 VDVLAPAAI-----EEVITKKNADNIKA-KIVAEVANGPVTPE-A-DEILFEKGI 155 (239)
T ss_dssp CSEEEECSC-----SCCBCTTGGGGCCC-SEEECCSSSCBCHH-H-HHHHHHTTC
T ss_pred ccEEeeccc-----cccccHHHHHhccc-cEEEecCCCCCCHH-H-HHHHHHCCC
Confidence 999988874 45677777777754 36677777776443 3 234555444
|
| >d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: BT0572-like domain: Hypothetical protein BT0572 species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=96.86 E-value=0.0014 Score=51.75 Aligned_cols=58 Identities=16% Similarity=0.284 Sum_probs=48.0
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCHHHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQDSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~e~l~~L~~~ 621 (656)
.|-+...|+||.+++|+.+|+++||||..+.+.... +.++.++-+|+ ++++.+.|++.
T Consensus 5 QisV~~eNkpG~L~~v~~~~~~~~inI~sl~v~~t~--~~~i~Riiv~~--~e~a~~~L~~~ 62 (70)
T d2f06a2 5 QLSIFLENKSGRLTEVTEVLAKENINLSALCIAENA--DFGILRGIVSD--PDKAYKALKDN 62 (70)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHTTCCEEEEEEEECS--SCEEEEEEESC--HHHHHHHHHHT
T ss_pred EEEEEEeCCCcHHHHHHHHHHHCCCCEEEEEEeecC--CCCEEEEEECC--hHHHHHHHHHC
Confidence 355678899999999999999999999999998654 66888888875 46777777764
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.84 E-value=0.0011 Score=58.06 Aligned_cols=84 Identities=15% Similarity=0.226 Sum_probs=55.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC-hhHH-HHcCCeec-----C---HHHH-hccCCEEEEccCCCcccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP-ADKA-RAVGVELV-----S---FDQA-LATADFISLHMPLNPTTS 298 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~-~~~a-~~~g~~~~-----~---l~el-l~~aDvV~l~~Plt~~T~ 298 (656)
++|.|+|+|.+|+.+|+.|...|.+|++.|.++. .+.+ .+.+...+ + |+++ +.++|.++.+++..+ .
T Consensus 1 M~IvI~G~G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~--~ 78 (132)
T d1lssa_ 1 MYIIIAGIGRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEE--V 78 (132)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHH--H
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHH--H
Confidence 4789999999999999999999999999998752 2223 23455432 2 3333 688999988877432 2
Q ss_pred ccccHHHHhcCCCCcEE
Q 006212 299 KIFNDETFAKMKKGVRI 315 (656)
Q Consensus 299 ~li~~~~l~~mK~gail 315 (656)
+++-....+.+.+..++
T Consensus 79 N~~~~~~~k~~~~~~iI 95 (132)
T d1lssa_ 79 NLMSSLLAKSYGINKTI 95 (132)
T ss_dssp HHHHHHHHHHTTCCCEE
T ss_pred HHHHHHHHHHcCCceEE
Confidence 23333333445555444
|
| >d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: SP0238-like domain: UPF0237 protein SP0238 species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.84 E-value=0.001 Score=53.85 Aligned_cols=62 Identities=16% Similarity=0.160 Sum_probs=44.0
Q ss_pred EEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCCCCCH-HHHHHHhcC
Q 006212 560 LILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDEEPNQ-DSLKEIGKV 621 (656)
Q Consensus 560 ~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~~~~~-e~l~~L~~~ 621 (656)
.|-+..+|+||+++.|++.|.++|+||.+++-......-...+.+.++...+. ++.++|..+
T Consensus 4 vitv~g~DrpGiVa~vt~~l~~~g~NI~d~~q~~~~~~f~~~~~v~~~~~~~~~~l~~~l~~l 66 (83)
T d1zpva1 4 IITVVGKDKSGIVAGVSGKIAELGLNIDDISQTVLDEYFTMMAVVSSDEKQDFTYLRNEFEAF 66 (83)
T ss_dssp EEEEEESCCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEESSCCCHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCCCeEEEEEeEEeCCEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence 45567899999999999999999999999987654322223344566665554 566666554
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.81 E-value=0.0013 Score=59.79 Aligned_cols=45 Identities=27% Similarity=0.394 Sum_probs=39.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.||...++.++.+|.+|++.|++. ..+.++++|.
T Consensus 26 ~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga 71 (170)
T d1e3ja2 26 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGA 71 (170)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHHHcCC
Confidence 47899999999999999999999999999999886 4566777775
|
| >d1b26a1 c.2.1.7 (A:179-412) Glutamate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.81 E-value=0.0076 Score=58.25 Aligned_cols=108 Identities=23% Similarity=0.272 Sum_probs=74.4
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHh-cCCCEEEEEC--------CCC-ChhHHH----H-------cCCeecCHHHHh
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAK-GLGMNVIAHD--------PYA-PADKAR----A-------VGVELVSFDQAL 281 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk-~~G~~Vi~~d--------~~~-~~~~a~----~-------~g~~~~~l~ell 281 (656)
.+.++.|+|+.|=|+|++|+.+|+.|. .+|++|++.+ +.- +..... . .+.+..+.++++
T Consensus 25 ~~~~l~g~~vaIqG~GnVG~~~a~~L~~e~Ga~vv~vsd~~G~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (234)
T d1b26a1 25 LGIDPKKATVAVQGFGNVGQFAALLISQELGSKVVAVSDSRGGIYNPEGFDVEELIRYKKEHGTVVTYPKGERITNEELL 104 (234)
T ss_dssp TTCCTTTCEEEEECCSHHHHHHHHHHHHHHCCEEEEEEETTEEEECTTCCCHHHHHHHHHHSSCSTTCSSCEEECHHHHH
T ss_pred cCCCcCCCEEEEECCCHHHHHHHHHHHHhcCCceEEeecCCCcEEeccccchHHHHHHHHhhcceeccccceeecccccc
Confidence 356799999999999999999999994 7899999753 332 221111 1 122445677777
Q ss_pred c-cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 282 A-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 282 ~-~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
. +||+++-|. ..+.|+.+...+++-. +|+-.+-+.+-. ++- +.|.+..|
T Consensus 105 ~~~~DI~~PcA-----~~~~I~~~~a~~l~~~-~I~e~AN~p~t~-~a~-~~L~~rgI 154 (234)
T d1b26a1 105 ELDVDILVPAA-----LEGAIHAGNAERIKAK-AVVEGANGPTTP-EAD-EILSRRGI 154 (234)
T ss_dssp TSCCSEEEECS-----CTTCBCHHHHTTCCCS-EEECCSSSCBCH-HHH-HHHHHTTC
T ss_pred ccccceeecch-----hcccccHHHHHHhhhc-eEeecCCCCCCH-HHH-HHHHHCCe
Confidence 6 899998875 3567899999988754 667777777644 332 34555444
|
| >d1v9la1 c.2.1.7 (A:180-421) Glutamate dehydrogenase {Pyrobaculum islandicum [TaxId: 2277]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Pyrobaculum islandicum [TaxId: 2277]
Probab=96.76 E-value=0.0035 Score=61.03 Aligned_cols=107 Identities=24% Similarity=0.254 Sum_probs=71.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC--------C-ChhHHH----------------HcCCeec-CH
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY--------A-PADKAR----------------AVGVELV-SF 277 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~--------~-~~~~a~----------------~~g~~~~-~l 277 (656)
+..|.||||.|=|+|++|+.+|+.|...|++|++.+.. - +.+... ..+...+ +.
T Consensus 26 ~~~l~g~~v~IqGfGnVG~~~a~~L~~~Gakvv~vsD~~g~i~~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (242)
T d1v9la1 26 WGGIEGKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLNVELIQKNKGLTGPALVELFTTKDNAEFVKNP 105 (242)
T ss_dssp HSCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSCEEECTTCCCTHHHHHTTTSCHHHHHHHHHHTSCCCCCSST
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEeecccccccccccccHHHHHHHhhcchhhHHHhhhhccCceEeeCc
Confidence 34799999999999999999999999999999975421 1 111111 1122222 34
Q ss_pred HHHhc-cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 278 DQALA-TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 278 ~ell~-~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
++++. +||+++-|.. .+.|+.+...+|+- .+|+-.+-+.+ ..++- +.|.+..|
T Consensus 106 ~~i~~~~~DIliPcA~-----~~~I~~~~a~~i~a-k~IvegAN~p~-t~~a~-~~L~~rgI 159 (242)
T d1v9la1 106 DAIFKLDVDIFVPAAI-----ENVIRGDNAGLVKA-RLVVEGANGPT-TPEAE-RILYERGV 159 (242)
T ss_dssp TGGGGCCCSEEEECSC-----SSCBCTTTTTTCCC-SEEECCSSSCB-CHHHH-HHHHTTTC
T ss_pred chhccccccEEeecch-----hccccHHHHHhccc-CEEEecCCCCC-ChhHH-HHHHhCCe
Confidence 55554 7999998874 44577777777764 46667777776 44442 45665544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.75 E-value=0.00083 Score=59.47 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=63.4
Q ss_pred ccCCCEEEEEecC----------hhHHHHHHHHhcCCCEEEEECCCCChhH--------HH----HcCCe-ecCHHHHhc
Q 006212 226 SLVGKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADK--------AR----AVGVE-LVSFDQALA 282 (656)
Q Consensus 226 ~l~gktvGIIGlG----------~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--------a~----~~g~~-~~~l~ell~ 282 (656)
.+.+++|||+|+- .-.-.+++.|...|.+|.+|||+.+... .. ..+.. ..++++++.
T Consensus 10 ~~~~kkI~ilGlafK~~t~D~R~Sps~~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~ 89 (136)
T d1mv8a3 10 SHDTRKVGLLGLSFKAGTDDLRESPLVELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVA 89 (136)
T ss_dssp TSSCCEEEEECCSSSTTCCCCTTCHHHHHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHH
T ss_pred hcCCCEEEEEEEEECCCCcchhcCHHHHHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhh
Confidence 4678999999984 4677899999999999999999642211 00 11122 348999999
Q ss_pred cCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 283 TADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 283 ~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.||+|+++++-. + + .+....++++.+|+|+-
T Consensus 90 ~~D~ivi~t~h~-~----f-~~l~~~~~~~~~I~D~~ 120 (136)
T d1mv8a3 90 SSDVLVLGNGDE-L----F-VDLVNKTPSGKKLVDLV 120 (136)
T ss_dssp HCSEEEECSCCG-G----G-HHHHHSCCTTCEEEESS
T ss_pred hceEEEEEeCCH-H----H-HHHHHHhcCCCEEEECC
Confidence 999999999833 2 2 23455677888999983
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.00083 Score=61.96 Aligned_cols=45 Identities=31% Similarity=0.382 Sum_probs=38.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|.
T Consensus 28 ~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa 74 (182)
T d1vj0a2 28 AGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGA 74 (182)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEECCCccchhheecccccccccccccccccccccccccccc
Confidence 48999999999999999999999997 899999875 4456666665
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=96.70 E-value=0.0027 Score=58.67 Aligned_cols=94 Identities=20% Similarity=0.367 Sum_probs=62.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCC-hhHHH----Hc----CC--eec------CHHHHhccCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAP-ADKAR----AV----GV--ELV------SFDQALATAD 285 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~-~~~a~----~~----g~--~~~------~l~ell~~aD 285 (656)
+.++.||++.|+|.|-.|++++..|...|. ++..++++.. .+.+. +. .. ... ++.+.+.++|
T Consensus 13 ~~~l~~k~vlIlGaGGaarai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 92 (182)
T d1vi2a1 13 GFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASAD 92 (182)
T ss_dssp TCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccc
Confidence 668999999999999999999999998887 6888888753 33221 11 11 111 2456678999
Q ss_pred EEEEccCCCccc---cccccHHHHhcCCCCcEEEEcC
Q 006212 286 FISLHMPLNPTT---SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 286 vV~l~~Plt~~T---~~li~~~~l~~mK~gailINva 319 (656)
+|+.|+|..... ..++. .+..++++.+++|+.
T Consensus 93 iiIN~Tp~G~~~~~~~~~~~--~~~~~~~~~~v~Di~ 127 (182)
T d1vi2a1 93 ILTNGTKVGMKPLENESLVN--DISLLHPGLLVTECV 127 (182)
T ss_dssp EEEECSSTTSTTSCSCCSCC--CGGGSCTTCEEEECC
T ss_pred eeccccCCccccccchhhhh--HHHhhhcchhhHHhh
Confidence 999999965321 11111 123456666666664
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=96.60 E-value=0.0036 Score=60.94 Aligned_cols=68 Identities=13% Similarity=0.207 Sum_probs=56.4
Q ss_pred cCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 270 VGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 270 ~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.|+..+ ++.|++++||+|++|+|..+.+..++ ++....+++|++|+|++.........+.+.++...+
T Consensus 127 ~Gv~v~~d~~Eav~~ADiII~~vP~~~~v~~Vi-~~I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi 195 (242)
T d2b0ja2 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDII-KKFADAIPEGAIVTHACTIPTTKFAKIFKDLGREDL 195 (242)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHH-HHHGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTS
T ss_pred CCCEEECCHHHHHhcCCeEEEeeecHHHHHHHH-HHHHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCC
Confidence 577665 89999999999999999666666676 667788999999999999888777888887877655
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=96.58 E-value=0.00096 Score=61.19 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=55.9
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEccCCCccccccccHHHH
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAPADKARAVGVE-LVSFDQALATADFISLHMPLNPTTSKIFNDETF 306 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l 306 (656)
.++||||+|.||+.+++.++.. ++++.+ +|++... ....++. ..+++++..+.|+|++|+|... . -+-..
T Consensus 4 irvgiiG~G~ig~~~~~~l~~~~~~elvav~~~~~~~--~~~~~~~~~~~~~~~~~~~D~Vvi~tp~~~--h---~~~a~ 76 (170)
T d1f06a1 4 IRVAIVGYGNLGRSVEKLIAKQPDMDLVGIFSRRATL--DTKTPVFDVADVDKHADDVDVLFLCMGSAT--D---IPEQA 76 (170)
T ss_dssp EEEEEECCSHHHHHHHHHHTTCSSEEEEEEEESSSCC--SSSSCEEEGGGGGGTTTTCSEEEECSCTTT--H---HHHHH
T ss_pred ceEEEECChHHHHHHHHHHHhCCCcEEEEEEeccccc--ccccccccchhhhhhccccceEEEeCCCcc--c---HHHHH
Confidence 4799999999999999999976 788776 5655321 1122332 2367778899999999999442 2 12233
Q ss_pred hcCCCCcEEEEcC
Q 006212 307 AKMKKGVRIVNVA 319 (656)
Q Consensus 307 ~~mK~gailINva 319 (656)
..++.|.-+|.+.
T Consensus 77 ~aL~aG~~vv~~~ 89 (170)
T d1f06a1 77 PKFAQFACTVDTY 89 (170)
T ss_dssp HHHTTTSEEECCC
T ss_pred HHHHCCCcEEEec
Confidence 3467776666554
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=96.55 E-value=0.0015 Score=59.51 Aligned_cols=87 Identities=24% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec----C---HHHHhccCCEEEEccCCCccccc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV----S---FDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~----~---l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.|.+|.|+|.|.+|...++.++.+|+++++.|... ..+.++++|...+ + .....+..|+++-++.... +
T Consensus 30 ~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~-~-- 106 (168)
T d1uufa2 30 PGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPH-N-- 106 (168)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCC-C--
T ss_pred CCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecch-h--
Confidence 48899999999999999999999999999998765 4567788886422 1 1122345777777765322 1
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 006212 300 IFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~mK~gailINva 319 (656)
-...+..++++..++.++
T Consensus 107 --~~~~~~~l~~~G~iv~~G 124 (168)
T d1uufa2 107 --LDDFTTLLKRDGTMTLVG 124 (168)
T ss_dssp --HHHHHTTEEEEEEEEECC
T ss_pred --HHHHHHHHhcCCEEEEec
Confidence 133455566666666665
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.51 E-value=0.0018 Score=58.25 Aligned_cols=92 Identities=17% Similarity=0.141 Sum_probs=58.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChh--HHHHc---------CCee-cCHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPAD--KARAV---------GVEL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~--~a~~~---------g~~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+++|+|||.|.+|..+|..+...| -++..||...... .+.++ .... .+-.+.+++||+|+++.-.
T Consensus 5 ~~~KI~IiGaG~vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 5 GGARVVVIGAGFVGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp TSCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred CCCeEEEECcCHHHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 5789999999999999999988655 4899999764321 11111 1111 2334678999999997653
Q ss_pred Ccc---ccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 294 NPT---TSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~---T~~-li--~~-------~~l~~mK~gailINva 319 (656)
... ++. ++ |. +.+.+..|.+++++++
T Consensus 85 ~~~~~~~R~dl~~~N~~i~~~i~~~i~~~~p~a~~ivvt 123 (148)
T d1ldna1 85 NQKPGETRLDLVDKNIAIFRSIVESVMASGFQGLFLVAT 123 (148)
T ss_dssp CCCTTTCSGGGHHHHHHHHHHHHHHHHHHTCCSEEEECS
T ss_pred ccccCcchhHHHHHHHHHHHHHHHHHHhhCCCceEEEec
Confidence 221 111 11 11 1233346788999985
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=96.51 E-value=0.0035 Score=55.73 Aligned_cols=91 Identities=20% Similarity=0.251 Sum_probs=58.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--c---------CCee--cCHHHHhccCCEEEEccC--
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--V---------GVEL--VSFDQALATADFISLHMP-- 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~---------g~~~--~~l~ell~~aDvV~l~~P-- 292 (656)
.+|+|||.|.+|..+|..+...| -++..||.......+.. . .... .+..+.+++||+|+++.-
T Consensus 1 mKI~IIGaG~VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag~~ 80 (142)
T d1guza1 1 MKITVIGAGNVGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAGLP 80 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCSCC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEecC
Confidence 37999999999999999998766 48999998764322211 1 1111 244567899999999863
Q ss_pred CCc-ccccc-c--cH-------HHHhcCCCCcEEEEcCC
Q 006212 293 LNP-TTSKI-F--ND-------ETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 293 lt~-~T~~l-i--~~-------~~l~~mK~gailINvaR 320 (656)
..+ +++.- + |. +.+.+..|++++++++-
T Consensus 81 ~~~g~~r~~l~~~N~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1guza1 81 RKPGMTREDLLMKNAGIVKEVTDNIMKHSKNPIIIVVSN 119 (142)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCSSCEEEECCS
T ss_pred CCCCCchHHHHHHHHHHHHHHHHHhhccCCCeEEEEecC
Confidence 333 12211 1 11 22333458899999863
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.50 E-value=0.0026 Score=64.97 Aligned_cols=88 Identities=18% Similarity=0.293 Sum_probs=65.3
Q ss_pred CCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCC-hh-HHHH----cCCee--c-CHHHHhccCCEEEEccCCCccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAP-AD-KARA----VGVEL--V-SFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~-~~-~a~~----~g~~~--~-~l~ell~~aDvV~l~~Plt~~T 297 (656)
-++++|||.|..+..-++.+. -++. +|.+||++.. .+ .+.. .|+.. + +++++++.||+|+.|++ ++.+
T Consensus 128 a~~l~iiG~G~QA~~~~~a~~~v~~i~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Ta-s~s~ 206 (340)
T d1x7da_ 128 ARKMALIGNGAQSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTA-DKAY 206 (340)
T ss_dssp CCEEEEECCSTTHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCC-CSSE
T ss_pred CceEEEEcccHHHHHHHHHHhhhcceeeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccc-cCCC
Confidence 468999999999999888776 4664 8999998752 22 2222 25533 3 89999999999999987 4455
Q ss_pred cccccHHHHhcCCCCcEEEEcCC
Q 006212 298 SKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaR 320 (656)
..++..+ .+|||+.|..+|.
T Consensus 207 ~Pv~~~~---~l~pG~hI~aiGs 226 (340)
T d1x7da_ 207 ATIITPD---MLEPGMHLNAVGG 226 (340)
T ss_dssp EEEECGG---GCCTTCEEEECSC
T ss_pred Ccccchh---hcCCCCEEeeccc
Confidence 6677654 4699999888874
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=96.45 E-value=0.0021 Score=58.47 Aligned_cols=88 Identities=18% Similarity=0.350 Sum_probs=60.2
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCC-C--hhHHHHcCCeec--CHHHHh-----ccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYA-P--ADKARAVGVELV--SFDQAL-----ATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~-~--~~~a~~~g~~~~--~l~ell-----~~aDvV~l~~Plt~~ 296 (656)
-++||||.|.||+. +.+.++.+ ..++.+ .|++. . ...++..|+... ++++++ .+.|+|++++|...
T Consensus 5 irvaIIGaG~ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~- 83 (157)
T d1nvmb1 5 LKVAIIGSGNIGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASA- 83 (157)
T ss_dssp EEEEEECCSHHHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHH-
T ss_pred cEEEEEcCcHHHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchh-
Confidence 37999999999986 56777766 456655 47654 2 245777787543 355553 46899999998332
Q ss_pred ccccccHHHHhcCCCCcEEEEcCC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINvaR 320 (656)
|.-.+..+...+.|+.+||-+.
T Consensus 84 --h~~~~~~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 84 --HVQNEALLRQAKPGIRLIDLTP 105 (157)
T ss_dssp --HHHHHHHHHHHCTTCEEEECST
T ss_pred --HHHhHHHHHHHHcCCEEEEccc
Confidence 2222344556799999999875
|
| >d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: Glycinamide ribonucleotide transformylase PurT, N-domain species: Escherichia coli [TaxId: 562]
Probab=96.44 E-value=0.0022 Score=54.99 Aligned_cols=37 Identities=38% Similarity=0.605 Sum_probs=33.9
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
...+.||||+|-|..|+-+|..++.+|++++++||+.
T Consensus 8 ~~~~~kigIlGgGQL~rMla~aA~~lG~~v~v~d~~~ 44 (111)
T d1kjqa2 8 RPAATRVMLLGSGELGKEVAIECQRLGVEVIAVDRYA 44 (111)
T ss_dssp STTCCEEEEESCSHHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 3456789999999999999999999999999999986
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=96.44 E-value=0.0014 Score=59.02 Aligned_cols=90 Identities=18% Similarity=0.188 Sum_probs=56.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHHH--c-------CC--ee-cCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKARA--V-------GV--EL-VSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~~--~-------g~--~~-~~l~ell~~aDvV~l~~Plt~ 295 (656)
|+|+|||.|.+|..+|-.+...| -++..||.......+.. + +. .. .+-.+.+++||+|+++.....
T Consensus 2 kKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~~ 81 (146)
T d1hyha1 2 RKIGIIGLGNVGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNIK 81 (146)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCGG
T ss_pred CeEEEECcCHHHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEeccccc
Confidence 79999999999999999887655 48999997643211111 1 11 11 122356899999999876422
Q ss_pred -------cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 296 -------TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 296 -------~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
.++. ++ |. +.+....|++++++++
T Consensus 82 ~~~~~~g~~R~~l~~~N~~i~~~i~~~i~~~~p~aivivvt 122 (146)
T d1hyha1 82 LQQDNPTGDRFAELKFTSSMVQSVGTNLKESGFHGVLVVIS 122 (146)
T ss_dssp GTC-------CTTHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred cccccCCccHHHHHHHHHHHHHHHHHHHhhcCCCeEEEEec
Confidence 1221 11 11 2234467889999996
|
| >d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.43 E-value=0.00076 Score=55.17 Aligned_cols=50 Identities=16% Similarity=0.151 Sum_probs=37.9
Q ss_pred cEEEEEecCCCCchhhHHhhhhcCCccccceEeeeeccCccEEEEEEeCC
Q 006212 559 NLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFRRNHGIMAIGVDE 608 (656)
Q Consensus 559 ~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~gg~al~~i~~D~ 608 (656)
..|-+.-+|+||+++.|+..|+++|+||.+++..+....-..++.++.+.
T Consensus 6 ~vitv~G~DrpGiva~vt~~l~~~g~NI~d~~~~~~~~~~~~~~~v~~~~ 55 (86)
T d1u8sa1 6 LVITAVGTDRPGICNEVVRLVTQAGCNIIDSRIAMFGKEFTLLMLISGSP 55 (86)
T ss_dssp EEEEEEEECCTTHHHHHHHHHHHTTCEEEEEEEEEETTEEEEEEEEEECH
T ss_pred EEEEEEeCCCChHHHHHHHHHHHCCCeEEEeEeEEECCeeEEEEEEEcCc
Confidence 34455679999999999999999999999999876653333455555543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=96.43 E-value=0.005 Score=54.70 Aligned_cols=89 Identities=15% Similarity=0.177 Sum_probs=56.6
Q ss_pred CEEEEEecChhHHHHHHHHhc--CCCEEEEECCCCChhHHHHcC----------Ce-ecCHHHHhccCCEEEEccCCCcc
Q 006212 230 KTLAVMGFGKVGSEVARRAKG--LGMNVIAHDPYAPADKARAVG----------VE-LVSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~--~G~~Vi~~d~~~~~~~a~~~g----------~~-~~~l~ell~~aDvV~l~~Plt~~ 296 (656)
.+|+|||.|.+|..+|..+.. +.-++..||.......+..+. .. ..+..+.+++||+|+++.-. +.
T Consensus 1 mKI~IIGaG~VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~-~~ 79 (140)
T d1a5za1 1 MKIGIVGLGRVGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV-PQ 79 (140)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC-CC
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc-cc
Confidence 479999999999999998774 446899999764222111111 11 12334568999999998642 22
Q ss_pred ccccccH--------------HHHhcCCCCcEEEEcC
Q 006212 297 TSKIFND--------------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~--------------~~l~~mK~gailINva 319 (656)
..++-.. +.+.+..|++++++++
T Consensus 80 ~~g~~r~dl~~~N~~I~~~i~~~i~~~~p~aivivvt 116 (140)
T d1a5za1 80 KPGETRLQLLGRNARVMKEIARNVSKYAPDSIVIVVT 116 (140)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCCcchhhhhccccchHHHHHHHHHhcCCCcEEEEeC
Confidence 2222211 2233457889999986
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=96.42 E-value=0.0016 Score=59.88 Aligned_cols=87 Identities=20% Similarity=0.253 Sum_probs=57.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCee-c-----CHHH-Hhc-----cCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVEL-V-----SFDQ-ALA-----TADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~-~-----~l~e-ll~-----~aDvV~l~~Pl 293 (656)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|+.. + ++.+ +.+ ..|+|+-|++.
T Consensus 27 ~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~ 106 (174)
T d1jqba2 27 MGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGG 106 (174)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSC
T ss_pred CCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCC
Confidence 48899999999999999999999997 799999876 456677788632 1 1222 111 15666666652
Q ss_pred CccccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINva 319 (656)
.. .+ +..+..++|+..++-++
T Consensus 107 ~~----~~-~~a~~~~~~~G~iv~~G 127 (174)
T d1jqba2 107 SE----TL-SQAVKMVKPGGIISNIN 127 (174)
T ss_dssp TT----HH-HHHHHHEEEEEEEEECC
T ss_pred HH----HH-HHHHHHHhcCCEEEEEe
Confidence 21 11 33344556666666654
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=96.35 E-value=0.0044 Score=55.22 Aligned_cols=90 Identities=20% Similarity=0.290 Sum_probs=54.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHH--HHc-------C--Cee--cCHHHHhccCCEEEEccCC--
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RAV-------G--VEL--VSFDQALATADFISLHMPL-- 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a--~~~-------g--~~~--~~l~ell~~aDvV~l~~Pl-- 293 (656)
++|+|||.|.+|.++|..+...++ +++.+|.......+ .++ + ... .+--+.+++||+|+++...
T Consensus 2 ~KI~IIGaG~VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~~~~advvvitag~~~ 81 (142)
T d1uxja1 2 KKISIIGAGFVGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYADTANSDVIVVTSGAPR 81 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGGGTTCSEEEECCSCC-
T ss_pred CeEEEECCCHHHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHHhcCCCEEEEeeeccC
Confidence 689999999999999998875453 89999987643222 111 1 111 2222457999999999852
Q ss_pred Cc-ccc-ccc--cH-------HHHhcCCCCcEEEEcC
Q 006212 294 NP-TTS-KIF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~-~T~-~li--~~-------~~l~~mK~gailINva 319 (656)
.+ +++ .++ |. ..+.+-.|.++++.++
T Consensus 82 ~~~~~r~dl~~~N~~i~~~i~~~i~k~~p~aivivvt 118 (142)
T d1uxja1 82 KPGMSREDLIKVNADITRACISQAAPLSPNAVIIMVN 118 (142)
T ss_dssp --------CHHHHHHHHHHHHHHHGGGCTTCEEEECS
T ss_pred CcCcchhHHHhHHHHHHHHHHHHHhccCCCceEEEeC
Confidence 22 122 111 11 1233346788888875
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=96.35 E-value=0.0021 Score=57.73 Aligned_cols=90 Identities=17% Similarity=0.148 Sum_probs=56.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhH--HHHc-------CC-e-ec-CHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADK--ARAV-------GV-E-LV-SFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~--a~~~-------g~-~-~~-~l~ell~~aDvV~l~~Pl 293 (656)
..++|+|||.|.+|..+|..|...| -+|..||....... +.++ +. . .. +.+ .+++||+|+++...
T Consensus 4 ~~~KI~IIGaG~VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~-~~~~adivvitag~ 82 (146)
T d1ez4a1 4 NHQKVVLVGDGAVGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYS-DCKDADLVVITAGA 82 (146)
T ss_dssp TBCEEEEECCSHHHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGG-GGTTCSEEEECCCC
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHH-HhccccEEEEeccc
Confidence 4679999999999999999988655 58999998642211 1111 11 1 11 444 46899999998752
Q ss_pred Ccccccc-----c--cH-------HHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKI-----F--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~l-----i--~~-------~~l~~mK~gailINva 319 (656)
+...++ + |. ..+..-.|.+++++++
T Consensus 83 -~~~~g~~r~~l~~~N~~i~~~~~~~i~~~~p~aivivvt 121 (146)
T d1ez4a1 83 -PQKPGESRLDLVNKNLNILSSIVKPVVDSGFDGIFLVAA 121 (146)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHTTCCSEEEECS
T ss_pred -ccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCCcEEEEeC
Confidence 222211 1 11 2234467788999987
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=96.35 E-value=0.0033 Score=56.11 Aligned_cols=91 Identities=19% Similarity=0.181 Sum_probs=55.0
Q ss_pred CEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCCh--hHHHHcC--C------eec-CHHHHhccCCEEEEccCCCc-
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPA--DKARAVG--V------ELV-SFDQALATADFISLHMPLNP- 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~--~~a~~~g--~------~~~-~l~ell~~aDvV~l~~Plt~- 295 (656)
++|+|||.|.+|..+|..+...+. ++..||..... ..+.++. . ... .-.+.+++||+|+++.-...
T Consensus 2 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~~~~ 81 (142)
T d1y6ja1 2 SKVAIIGAGFVGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRK 81 (142)
T ss_dssp CCEEEECCSHHHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC---
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEecccccC
Confidence 579999999999999999886554 89999976532 2233221 1 111 23456899999999854222
Q ss_pred --cccc-cc--cH-------HHHhcCCCCcEEEEcCC
Q 006212 296 --TTSK-IF--ND-------ETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 296 --~T~~-li--~~-------~~l~~mK~gailINvaR 320 (656)
+++. ++ |. +.+.+..|.+++++++.
T Consensus 82 ~~~~r~~l~~~N~~i~~~i~~~i~~~~p~ai~ivvtN 118 (142)
T d1y6ja1 82 PGETRLDLAKKNVMIAKEVTQNIMKYYNHGVILVVSN 118 (142)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHCCSCEEEECSS
T ss_pred cCcchhHHhhHHHHHHHHHHHHhhccCCCceEEEecC
Confidence 1221 11 11 12333567889999863
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=96.29 E-value=0.0038 Score=56.93 Aligned_cols=94 Identities=16% Similarity=0.218 Sum_probs=60.3
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhHHHH--c--CC------ee--cCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADKARA--V--GV------EL--VSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a~~--~--g~------~~--~~l~ell~~aDvV~l~~ 291 (656)
.+..++|+|||.|.+|..+|..+...|. ++..||.......+.. + .. .. ..-.+.+++||+|+++.
T Consensus 17 ~~~~~KV~IIGaG~VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitA 96 (160)
T d1i0za1 17 TVPNNKITVVGVGQVGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTA 96 (160)
T ss_dssp CCCSSEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEec
Confidence 4567899999999999999999997775 8999998643222211 1 11 11 12245689999999976
Q ss_pred CCC--c-cccc-cc--cH-------HHHhcCCCCcEEEEcC
Q 006212 292 PLN--P-TTSK-IF--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt--~-~T~~-li--~~-------~~l~~mK~gailINva 319 (656)
-.. + +++- ++ |. ..+....+.+++++++
T Consensus 97 g~~~~~g~tR~~l~~~N~~i~~~i~~~i~~~~p~aiiivvt 137 (160)
T d1i0za1 97 GVRQQEGESRLNLVQRNVNVFKFIIPQIVKYSPDCIIIVVS 137 (160)
T ss_dssp SCCCCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECS
T ss_pred CCccccCcchHHHHHHHHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 532 2 2332 11 11 1223346788999986
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=96.25 E-value=0.0023 Score=58.06 Aligned_cols=101 Identities=11% Similarity=0.166 Sum_probs=60.7
Q ss_pred EEEEEecChhHHH-HHHHHhcC-CCEEEEECCCCC--hhHHHHcCCe--ecCHHHHhc-cCCEEEEccCCCccccccccH
Q 006212 231 TLAVMGFGKVGSE-VARRAKGL-GMNVIAHDPYAP--ADKARAVGVE--LVSFDQALA-TADFISLHMPLNPTTSKIFND 303 (656)
Q Consensus 231 tvGIIGlG~IG~~-vA~~lk~~-G~~Vi~~d~~~~--~~~a~~~g~~--~~~l~ell~-~aDvV~l~~Plt~~T~~li~~ 303 (656)
++||||+|.+|+. ....++.. +.++.++|+... ...+...++. +.++++++. +.|+|++|+|.. +..-+-.
T Consensus 3 rvgiiG~G~~~~~~~~~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~--~H~~~~~ 80 (167)
T d1xeaa1 3 KIAMIGLGDIAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATD--VHSTLAA 80 (167)
T ss_dssp EEEEECCCHHHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGG--GHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccc--ccccccc
Confidence 7999999999976 56667665 678888998752 2334455653 347888875 679999999933 3322223
Q ss_pred HHHhcCCCCcEEEEc-CCCchhcHHHHHHhHhc
Q 006212 304 ETFAKMKKGVRIVNV-ARGGVIDEEALVRALDS 335 (656)
Q Consensus 304 ~~l~~mK~gailINv-aRg~ivde~aL~~aL~~ 335 (656)
..+. .+. .+++.- .--.+-+.+.|.++.++
T Consensus 81 ~al~-~gk-~V~~EKP~~~~~~e~~~l~~~a~~ 111 (167)
T d1xeaa1 81 FFLH-LGI-PTFVDKPLAASAQECENLYELAEK 111 (167)
T ss_dssp HHHH-TTC-CEEEESCSCSSHHHHHHHHHHHHH
T ss_pred cccc-ccc-ccccCCCCcCCHHHHHHHHHHHHH
Confidence 3333 222 244432 11222345566665554
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=96.25 E-value=0.0035 Score=56.68 Aligned_cols=92 Identities=20% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCChhHH--HHc-------CCe----e-cCHHHHhccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPADKA--RAV-------GVE----L-VSFDQALATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~~~a--~~~-------g~~----~-~~l~ell~~aDvV~l~~P 292 (656)
+.++|+|||.|.+|+.+|..+...++ ++..||.+...... .++ +.. . .+.++.++.||+|++++.
T Consensus 6 k~~KI~IIGaG~VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 6 RRKKVAMIGSGMIGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred CCCcEEEECCCHHHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 45799999999999999988876554 89999977643221 111 111 1 246788999999999885
Q ss_pred CC--c------ccccc-c--cH-------HHHhcCCCCcEEEEcC
Q 006212 293 LN--P------TTSKI-F--ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt--~------~T~~l-i--~~-------~~l~~mK~gailINva 319 (656)
.. + .++.- + |. +.+.+..|.+++++++
T Consensus 86 ~~~~~g~~~~~~tR~~l~~~n~~iv~~i~~~i~~~~p~aiviivs 130 (154)
T d1pzga1 86 LTKVPGKPDSEWSRNDLLPFNSKIIREIGQNIKKYCPKTFIIVVT 130 (154)
T ss_dssp CSSCTTCCGGGCCGGGGHHHHHHHHHHHHHHHHHHCTTCEEEECC
T ss_pred cccCCCCCCcccchhhhhhhhHHHHHHHHHHHHhcCCCcEEEEeC
Confidence 32 1 13221 1 11 1233456889999986
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=96.24 E-value=0.0033 Score=57.80 Aligned_cols=95 Identities=16% Similarity=0.209 Sum_probs=62.2
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhH--HHHc----C------CeecCHHHHhccCCEEEEcc
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADK--ARAV----G------VELVSFDQALATADFISLHM 291 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~--a~~~----g------~~~~~l~ell~~aDvV~l~~ 291 (656)
+.++.||++.|+|.|-.+++++..|...| +|..++|+..... +... . +.+.+++..+..+|+|+.|+
T Consensus 13 ~~~~~~k~vlIlGaGG~arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~t 91 (177)
T d1nvta1 13 IGRVKDKNIVIYGAGGAARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINAT 91 (177)
T ss_dssp HCCCCSCEEEEECCSHHHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECS
T ss_pred CCCcCCCEEEEECCcHHHHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCC
Confidence 45799999999999999999999998877 9999998742211 1111 1 12345666788999999999
Q ss_pred CCCcccc-ccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPTTS-KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T~-~li~~~~l~~mK~gailINva 319 (656)
|...... ..-....+..++++.++.|+.
T Consensus 92 p~g~~~~~~~~~~~~~~~~~~~~~v~D~~ 120 (177)
T d1nvta1 92 PIGMYPNIDVEPIVKAEKLREDMVVMDLI 120 (177)
T ss_dssp CTTCTTCCSSCCSSCSTTCCSSSEEEECC
T ss_pred cccccccccccchhhhhccCcccceeeec
Confidence 9643211 110011223345666666664
|
| >d1hwxa1 c.2.1.7 (A:209-501) Glutamate dehydrogenase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamate dehydrogenase species: Cow (Bos taurus) [TaxId: 9913]
Probab=96.24 E-value=0.0068 Score=60.42 Aligned_cols=96 Identities=22% Similarity=0.282 Sum_probs=62.9
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEEC--------CCC-ChhHHHHc----CC------eecCHHHHhc-c
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHD--------PYA-PADKARAV----GV------ELVSFDQALA-T 283 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d--------~~~-~~~~a~~~----g~------~~~~l~ell~-~ 283 (656)
...|.||||.|=|+|++|+.+|+.|...|++|++.+ +.- +.+...+. |- ...+.++++. .
T Consensus 31 ~~~L~gktvaIqGfGnVG~~~A~~L~e~Gakvv~vsD~~G~i~~~~Gld~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (293)
T d1hwxa1 31 TPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKELEDFKLQHGTILGFPKAKIYEGSILEVD 110 (293)
T ss_dssp CSSSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEEETTEEECCTTCCCHHHHHHHHHTTSSSTTCTTSCBCCSCGGGCC
T ss_pred CCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEccchhhccccccchHHHHHHHHHcCCeecccccccCCcccccCC
Confidence 457999999999999999999999999999998853 221 22221110 10 1122334444 7
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCchhc
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ivd 325 (656)
||+++-|. +.+.|+.+....++-. +|+-.+-+++-.
T Consensus 111 ~DIliPaA-----~~~~I~~~~a~~l~ak-~I~EgAN~P~t~ 146 (293)
T d1hwxa1 111 CDILIPAA-----SEKQLTKSNAPRVKAK-IIAEGANGPTTP 146 (293)
T ss_dssp CSEEEECS-----SSSCBCTTTGGGCCCS-EEECCSSSCBCH
T ss_pred ccEEeecc-----ccccccHHHHHHHhhC-EEeccCCCCCCc
Confidence 88887765 3456777777777543 566666677543
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=96.21 E-value=0.0038 Score=57.98 Aligned_cols=41 Identities=29% Similarity=0.321 Sum_probs=37.6
Q ss_pred ccccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 222 YVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 222 ~~g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..|.+|.||++.|.| -|-||+.+|+.|...|++|+..+++.
T Consensus 16 ~~~~~l~gK~vlItGasgGIG~~ia~~la~~G~~V~~~~r~~ 57 (191)
T d1luaa1 16 AAGGSVKGKKAVVLAGTGPVGMRSAALLAGEGAEVVLCGRKL 57 (191)
T ss_dssp HTTSCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred HcCCCCCCCEEEEECCCHHHHHHHHHHHHhhccchhhcccch
Confidence 357899999999999 79999999999999999999999875
|
| >d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Glycine cleavage system transcriptional repressor domain: putative transcriptional repressor VC2159 species: Vibrio cholerae [TaxId: 666]
Probab=96.19 E-value=0.0051 Score=50.78 Aligned_cols=61 Identities=13% Similarity=0.192 Sum_probs=40.6
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeecc----Ccc--EEE--EEEeCCCCCH-HHHHHHhcC
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTFR----RNH--GIM--AIGVDEEPNQ-DSLKEIGKV 621 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~~----gg~--al~--~i~~D~~~~~-e~l~~L~~~ 621 (656)
+.|..+|+||+++.|++.|+++++||.+++...... .+. -.| .+.++...+. ++.+++..+
T Consensus 9 v~v~g~DrpGIV~~it~~la~~~~nI~~l~t~~~~a~~~~~~~~~f~~~~~~~~p~~~~~~~l~~~l~~l 78 (93)
T d1u8sa2 9 VYVESDDKLGLTEKFTQFFAQRQIGMASLSAQTISKDKLHSEQNQFHIAISARVDSGCNLMQLQEEFDAL 78 (93)
T ss_dssp EEEEESCCTTHHHHHHHHHHHTTCCEEEEEEEEEC--------CEEEEEEEEEECTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHHcCCCchhhhcccccccCCcccCccEEEEEEEEcCccccHHHHHHHHHHH
Confidence 456789999999999999999999999998743221 111 223 3555666665 444444443
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.16 E-value=0.0037 Score=57.47 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=47.4
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCC----e-ecCHHHHhc--cCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIA-HDPYAP--ADKARAVGV----E-LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~----~-~~~l~ell~--~aDvV~l~~Pl 293 (656)
++||||+|.||+..++.++.. +++|.+ +|+... ...+.+.++ . +.+++++++ +.|+|++++|.
T Consensus 3 ki~iIG~G~~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~ 76 (184)
T d1ydwa1 3 RIGVMGCADIARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPT 76 (184)
T ss_dssp EEEEESCCTTHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCG
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccc
Confidence 799999999999999999866 788885 687642 223344453 2 348999984 68999999993
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=96.13 E-value=0.0081 Score=54.04 Aligned_cols=92 Identities=17% Similarity=0.186 Sum_probs=58.3
Q ss_pred CCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCCChh--HHHHc-------CCe--e--cCHHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYAPAD--KARAV-------GVE--L--VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~~~~--~a~~~-------g~~--~--~~l~ell~~aDvV~l~~Plt 294 (656)
..+|+|||.|.+|+.+|..+...+ .++..||...... .+.++ +.. . .+..+.+++||+|+++.-..
T Consensus 3 ~~KI~IIGaG~VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~~ 82 (150)
T d1t2da1 3 KAKIVLVGSGMIGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGFT 82 (150)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSCS
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEecccc
Confidence 468999999999999998887555 3889999765332 22111 111 1 24456789999999987632
Q ss_pred cc---c-----cc-cc--cHH-------HHhcCCCCcEEEEcCC
Q 006212 295 PT---T-----SK-IF--NDE-------TFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~~---T-----~~-li--~~~-------~l~~mK~gailINvaR 320 (656)
.. + +. ++ |.. .+....|++++++++.
T Consensus 83 ~~~g~~~~~~~R~~l~~~N~~iv~~i~~~i~~~~p~aivivvtN 126 (150)
T d1t2da1 83 KAPGKSDKEWNRDDLLPLNNKIMIEIGGHIKKNCPNAFIIVVTN 126 (150)
T ss_dssp SCTTCCSTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECSS
T ss_pred cCCCCCccccchhHHHHHHHHHHHHHHHHHHhcCCCeEEEEecC
Confidence 21 1 21 11 111 1333468899999863
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.99 E-value=0.01 Score=52.90 Aligned_cols=94 Identities=17% Similarity=0.245 Sum_probs=60.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCC--EEEEECCCCChhHHHHcCC--------ee---cCHHHHhccCCEEEEccCC--
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVGV--------EL---VSFDQALATADFISLHMPL-- 293 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a~~~g~--------~~---~~l~ell~~aDvV~l~~Pl-- 293 (656)
.+|+||| .|.+|+.+|..+...|+ ++..+|.......+.++.. .. .+..+.++.||+|+++.-.
T Consensus 1 sKv~IiGA~G~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag~~~ 80 (144)
T d1mlda1 1 AKVAVLGASGGIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVPR 80 (144)
T ss_dssp CEEEEETTTSTTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCCC
T ss_pred CeEEEECCCChHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCCcCC
Confidence 3799999 59999999999987664 7888997653333333321 01 2467889999999997652
Q ss_pred Cc-cccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 294 NP-TTSK-IF--ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 294 t~-~T~~-li--~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
.+ +++. ++ |. +.+.+..|.++++.++ ..+|
T Consensus 81 ~~g~sR~~ll~~N~~i~~~i~~~i~~~~p~~iiivvt--NPvD 121 (144)
T d1mlda1 81 KPGMTRDDLFNTNATIVATLTAACAQHCPDAMICIIS--NPVN 121 (144)
T ss_dssp CTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SCHH
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHhcCCCeEEEEec--Cchh
Confidence 22 2221 11 11 1223357889999986 4455
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=95.98 E-value=0.0034 Score=56.60 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=39.2
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.+|...++.+|.+|.+|++.|++. ..+.+++.|.
T Consensus 27 ~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga 72 (166)
T d1llua2 27 PGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELARKLGA 72 (166)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTC
T ss_pred CCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhhccCc
Confidence 48899999999999999999999999999999875 4566777775
|
| >d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=95.98 E-value=0.0058 Score=56.63 Aligned_cols=63 Identities=21% Similarity=0.352 Sum_probs=43.3
Q ss_pred EEEEEecChhHHHHHHHHhcC-CCEEEEE-CCCCChhH--HHHcC-----------------Cee-cCHHHHhccCCEEE
Q 006212 231 TLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPYAPADK--ARAVG-----------------VEL-VSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~~~~~~~--a~~~g-----------------~~~-~~l~ell~~aDvV~ 288 (656)
+|||.|||+||+.+++.+... +++|++. |+...... ....+ +.. -++.+++.++|+|+
T Consensus 3 KVaINGfGRIGR~v~Ral~~~~dievVaInd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~g~~~~~~~~vDiVi 82 (178)
T d1b7go1 3 NVAVNGYGTIGKRVADAIIKQPDMKLVGVAKTSPNYEAFIAHRRGIRIYVPQQSIKKFEESGIPVAGTVEDLIKTSDIVV 82 (178)
T ss_dssp EEEEECCSHHHHHHHHHHHTCTTEEEEEEECSSCSHHHHHHHHTTCCEECCGGGHHHHHTTTCCCCCCHHHHHHHCSEEE
T ss_pred EEEEECCCHHHHHHHHHHHhCCCCEEEEEECCCCcHHHHHhcccCcceeccCccceeccccceecCCchhhhhhcCCEEE
Confidence 799999999999999999865 6898886 44332221 11111 111 15677778889988
Q ss_pred EccCC
Q 006212 289 LHMPL 293 (656)
Q Consensus 289 l~~Pl 293 (656)
-|+|.
T Consensus 83 ecTG~ 87 (178)
T d1b7go1 83 DTTPN 87 (178)
T ss_dssp ECCST
T ss_pred ECCCC
Confidence 88884
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=95.95 E-value=0.0039 Score=51.97 Aligned_cols=66 Identities=14% Similarity=0.252 Sum_probs=50.2
Q ss_pred CCCEEEEEecChhH-HHHHHHHhcCCCEEEEECCCCC--hhHHHHcCCeec--CHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVG-SEVARRAKGLGMNVIAHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG-~~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~Pl 293 (656)
+.|++-|||.|-+| +++|+.|+..|++|.++|...+ .+...+.|+... .-.+.+.+.|+|+..-..
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~AI 77 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSSAI 77 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECTTS
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECCCc
Confidence 46899999999999 5679999999999999997653 345566787543 234456889988776443
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.94 E-value=0.0044 Score=55.64 Aligned_cols=87 Identities=23% Similarity=0.412 Sum_probs=57.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------C----HHHHhccCCEEEEccCCCcc
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------S----FDQALATADFISLHMPLNPT 296 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~----l~ell~~aDvV~l~~Plt~~ 296 (656)
.|++|.|.|.|.||...++.++..|.+|++.+.+. ..+.++++|+..+ + +.+.....|.++.+.+ .++
T Consensus 27 ~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~ 105 (168)
T d1rjwa2 27 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADLVVNPLKEDAAKFMKEKVGGVHAAVVTAV-SKP 105 (168)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEECTTTSCHHHHHHHHHSSEEEEEESSC-CHH
T ss_pred CCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcceecccccchhhhhcccccCCCceEEeecC-CHH
Confidence 48899999999999999999999999999999875 4566777776432 1 2222344455555443 221
Q ss_pred ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 T~~li~~~~l~~mK~gailINva 319 (656)
+ + ...+..|+++..++.++
T Consensus 106 ~---~-~~a~~~l~~~G~i~~~g 124 (168)
T d1rjwa2 106 A---F-QSAYNSIRRGGACVLVG 124 (168)
T ss_dssp H---H-HHHHHHEEEEEEEEECC
T ss_pred H---H-HHHHHHhccCCceEecc
Confidence 1 1 34445566666666654
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.93 E-value=0.0084 Score=60.45 Aligned_cols=86 Identities=15% Similarity=0.205 Sum_probs=63.8
Q ss_pred CCEEEEEecChhHHHHHHHHh-cCCC-EEEEECCCCCh-----hHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccc
Q 006212 229 GKTLAVMGFGKVGSEVARRAK-GLGM-NVIAHDPYAPA-----DKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk-~~G~-~Vi~~d~~~~~-----~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
-+++||||.|..++.-++.+. -+.. +|.+|+++... +.....++.. ++.++.+..||+|+.|+|. +..+
T Consensus 125 ~~~l~iiGaG~QA~~~~~al~~~~~i~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s---~~P~ 201 (320)
T d1omoa_ 125 SSVFGFIGCGTQAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPS---RKPV 201 (320)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCC---SSCC
T ss_pred ccEEEEecCcccHHHHHHHHHHHhhhhhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccC---cccc
Confidence 468999999999999999887 3564 89999987521 1223344433 4778889999999999873 4556
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 006212 301 FNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaR 320 (656)
+..+ .+|||+.|..+|.
T Consensus 202 ~~~~---~l~~G~hv~~iGs 218 (320)
T d1omoa_ 202 VKAE---WVEEGTHINAIGA 218 (320)
T ss_dssp BCGG---GCCTTCEEEECSC
T ss_pred cchh---hcCCCCeEeecCC
Confidence 7654 4799999998874
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.82 E-value=0.0043 Score=57.81 Aligned_cols=66 Identities=18% Similarity=0.215 Sum_probs=49.1
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCCh-hHHHHcCCeec--------CHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPA-DKARAVGVELV--------SFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~-~~a~~~g~~~~--------~l~ell~~aDvV~l~~Pl 293 (656)
..|+|.|+| .|.||+.++++|...|++|.+++++... ......+++++ +++++++.+|+|+.++..
T Consensus 2 ~~kkIlV~GatG~iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 2 AVKKIAIFGATGQTGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp CCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 468999999 7999999999999999999999775421 11122344322 366789999999988863
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=95.80 E-value=0.0083 Score=53.54 Aligned_cols=93 Identities=19% Similarity=0.195 Sum_probs=57.7
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHH--Hc--C-----C-e--ecCHHHHhccCCEEEEccCCCc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKAR--AV--G-----V-E--LVSFDQALATADFISLHMPLNP 295 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~--~~--g-----~-~--~~~l~ell~~aDvV~l~~Plt~ 295 (656)
.+|+|||.|.+|..+|..+...| -++..+|......++. ++ . . . ..+-.+.+++||+|+++.-. +
T Consensus 2 ~Ki~IIGaG~VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~~~~~daDvVVitaG~-~ 80 (143)
T d1llda1 2 TKLAVIGAGAVGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDPEICRDADMVVITAGP-R 80 (143)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCGGGGTTCSEEEECCCC-C
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCHHHhhCCcEEEEeccc-c
Confidence 47999999999999999887555 4899999765322221 11 1 1 1 12223468899999998752 2
Q ss_pred cccccc-------cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 296 TTSKIF-------ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 296 ~T~~li-------~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
...++- |. ..+....|+++++.++ ..+|
T Consensus 81 ~~~g~~R~dl~~~N~~i~~~i~~~i~~~~p~ai~ivvt--NPvD 122 (143)
T d1llda1 81 QKPGQSRLELVGATVNILKAIMPNLVKVAPNAIYMLIT--NPVD 122 (143)
T ss_dssp CCTTCCHHHHHHHHHHHHHHHHHHHHHHCTTSEEEECC--SSHH
T ss_pred cCCCCchhhhhhhhHHHHHHHHHHHHhhCCCeEEEEeC--CchH
Confidence 222221 11 1233357788999886 4444
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.77 E-value=0.0065 Score=55.35 Aligned_cols=65 Identities=15% Similarity=0.113 Sum_probs=47.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCCCh--hHHHHcCCeecCHHHHhccCCEEEEccCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYAPA--DKARAVGVELVSFDQALATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~~~--~~a~~~g~~~~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+|.|+|.|-.+++++..|+..|+ +|..++|+... ..+...+....+- .-..++|+|+.|+|.
T Consensus 16 ~~~~vlIlGaGGaarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~-~~~~~~DliINaTpi 83 (167)
T d1npya1 16 KNAKVIVHGSGGMAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINS-LENQQADILVNVTSI 83 (167)
T ss_dssp TTSCEEEECSSTTHHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESC-CTTCCCSEEEECSST
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhc-ccccchhhheecccc
Confidence 68899999999999999999999997 78899987522 2233345443321 113578999999884
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.72 E-value=0.0061 Score=55.46 Aligned_cols=95 Identities=16% Similarity=0.147 Sum_probs=59.2
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC--EEEEECCCCChhH--HHHc-------CCe---ecCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM--NVIAHDPYAPADK--ARAV-------GVE---LVSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~--a~~~-------g~~---~~~l~ell~~aDvV~l~~ 291 (656)
.+...+|+|||.|.+|..+|..+...|. ++..||....... +.++ +.. ..+-.+.+++||+|+++.
T Consensus 16 ~~~~~KI~IIGaG~VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~~~~~~adivvita 95 (159)
T d2ldxa1 16 KLSRCKITVVGVGDVGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDYNVSANSKLVIITA 95 (159)
T ss_dssp CCCCCEEEEECCSHHHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSGGGGTTEEEEEECC
T ss_pred cCCCCeEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccchhhhccccEEEEec
Confidence 3455689999999999999999987664 8999997642211 1111 111 112234569999999986
Q ss_pred CC--Cc-cccc-cc--cHHH-------HhcCCCCcEEEEcCC
Q 006212 292 PL--NP-TTSK-IF--NDET-------FAKMKKGVRIVNVAR 320 (656)
Q Consensus 292 Pl--t~-~T~~-li--~~~~-------l~~mK~gailINvaR 320 (656)
-. .+ +++. ++ |.+. +....|++++++++.
T Consensus 96 g~~~~~~~~R~dll~~N~~i~~~i~~~i~~~~p~~ivivvtN 137 (159)
T d2ldxa1 96 GARMVSGQTRLDLLQRNVAIMKAIVPGVIQNSPDCKIIVVTN 137 (159)
T ss_dssp SCCCCTTTCSSCTTHHHHHHHHHHTTTHHHHSTTCEEEECSS
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHHHHHhccCCCeEEEEeCC
Confidence 42 22 2321 22 2222 223578899999974
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.69 E-value=0.0075 Score=55.34 Aligned_cols=64 Identities=23% Similarity=0.383 Sum_probs=46.3
Q ss_pred CEEEEEecChhHHH-HHHHHhcCC--CEEEE-ECCCCC--hhHHHHcCCe--ecCHHHHhc--cCCEEEEccCC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGLG--MNVIA-HDPYAP--ADKARAVGVE--LVSFDQALA--TADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~G--~~Vi~-~d~~~~--~~~a~~~g~~--~~~l~ell~--~aDvV~l~~Pl 293 (656)
-++||||+|.+|+. .+..++.++ ++|.+ +|++.. ...+...+.. +.+++++++ +.|+|++|+|.
T Consensus 4 irigiIG~G~~g~~~h~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~ 77 (181)
T d1zh8a1 4 IRLGIVGCGIAARELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPV 77 (181)
T ss_dssp EEEEEECCSHHHHHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCG
T ss_pred cEEEEEcCCHHHHHHHHHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeeccccc
Confidence 37999999999987 477787653 57764 788752 2234455653 358999986 57999999993
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=95.68 E-value=0.004 Score=56.89 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=36.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.||...++.++.+|.+ |++.|++. ..+.++++|+
T Consensus 28 ~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga 74 (174)
T d1f8fa2 28 PASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQLGA 74 (174)
T ss_dssp TTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTC
T ss_pred CCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHHHcCC
Confidence 588999999999999999999999885 55667765 4566777776
|
| >d1kyqa1 c.2.1.11 (A:1-150) Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Bifunctional dehydrogenase/ferrochelatase Met8p, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.57 E-value=0.0029 Score=56.50 Aligned_cols=40 Identities=20% Similarity=0.248 Sum_probs=36.2
Q ss_pred cccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 223 VGVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 223 ~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
...+|.||++.|||-|.+|..-|+.|..+|++|.+++|..
T Consensus 7 l~~~l~gkrvLViGgG~va~~ka~~Ll~~GA~VtVvap~~ 46 (150)
T d1kyqa1 7 LAHQLKDKRILLIGGGEVGLTRLYKLMPTGCKLTLVSPDL 46 (150)
T ss_dssp EEECCTTCEEEEEEESHHHHHHHHHHGGGTCEEEEEEEEE
T ss_pred hheeeCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 3568999999999999999999999999999999997653
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=95.56 E-value=0.011 Score=52.60 Aligned_cols=90 Identities=16% Similarity=0.108 Sum_probs=56.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCC--CEEEEECCCCChhHHH--Hc-------CC--ee--cCHHHHhccCCEEEEccCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYAPADKAR--AV-------GV--EL--VSFDQALATADFISLHMPLN 294 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~~~~~a~--~~-------g~--~~--~~l~ell~~aDvV~l~~Plt 294 (656)
.+|+|||.|.+|..+|..+...| -++..||.......+. ++ .. .. .+-.+.+++||+|++....
T Consensus 1 MKI~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~~~~~~adiVvitag~- 79 (142)
T d1ojua1 1 MKLGFVGAGRVGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADYSLLKGSEIIVVTAGL- 79 (142)
T ss_dssp CEEEEECCSHHHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCGGGGTTCSEEEECCCC-
T ss_pred CEEEEECcCHHHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCHHHhccccEEEEeccc-
Confidence 47999999999999999888555 4799999764322121 11 11 11 1223689999999998752
Q ss_pred ccccccc-------cH-------HHHhcCCCCcEEEEcCC
Q 006212 295 PTTSKIF-------ND-------ETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 295 ~~T~~li-------~~-------~~l~~mK~gailINvaR 320 (656)
+.+.++- |. +.+.+..|.+++++++-
T Consensus 80 ~~~~g~~r~~l~~~n~~i~~~i~~~i~~~~p~aivivvtN 119 (142)
T d1ojua1 80 ARKPGMTRLDLAHKNAGIIKDIAKKIVENAPESKILVVTN 119 (142)
T ss_dssp CCCSSCCHHHHHHHHHHHHHHHHHHHHTTSTTCEEEECSS
T ss_pred cCCCCCchHHHHHHhhHHHHHHHHHHHhhCCCcEEEEecC
Confidence 2222221 11 12334567899999874
|
| >d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PreATP-grasp domain superfamily: PreATP-grasp domain family: BC N-terminal domain-like domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0061 Score=48.92 Aligned_cols=34 Identities=26% Similarity=0.406 Sum_probs=32.1
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAP 263 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~ 263 (656)
|||||+|-|--|+-++..++.+|++++++||...
T Consensus 2 k~vgIlG~GQLgrMl~~Aa~~LG~~v~vldp~~~ 35 (78)
T d3etja2 2 KQVCVLGNGQLGRMLRQAGEPLGIAVWPVGLDAE 35 (78)
T ss_dssp EEEEEEBCSHHHHHHHHHHGGGTEEEEEECTTSC
T ss_pred CEEEEEcCCHHHHHHHHHHHHcCCEEEEEcCCCC
Confidence 6999999999999999999999999999999863
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=95.32 E-value=0.012 Score=48.27 Aligned_cols=64 Identities=16% Similarity=0.214 Sum_probs=48.3
Q ss_pred CCEEEEEecChhHH-HHHHHHhcCCCEEEEECCCCC--hhHHHHcCCeec--CHHHHhccCCEEEEccC
Q 006212 229 GKTLAVMGFGKVGS-EVARRAKGLGMNVIAHDPYAP--ADKARAVGVELV--SFDQALATADFISLHMP 292 (656)
Q Consensus 229 gktvGIIGlG~IG~-~vA~~lk~~G~~Vi~~d~~~~--~~~a~~~g~~~~--~l~ell~~aDvV~l~~P 292 (656)
+++|=|||.|-+|. ++|+.|+..|+.|.++|...+ .+..++.|+.+. .-.+.+.++|+|+..-.
T Consensus 1 ~~~ihfiGIgG~GMs~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~SsA 69 (89)
T d1j6ua1 1 HMKIHFVGIGGIGMSAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKTPA 69 (89)
T ss_dssp CCEEEEETTTSHHHHHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEECTT
T ss_pred CcEEEEEeECHHHHHHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEecC
Confidence 35788999999997 689999999999999998753 245677787653 12344578998876543
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.32 E-value=0.0071 Score=55.38 Aligned_cols=71 Identities=15% Similarity=0.142 Sum_probs=49.3
Q ss_pred ccccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh--hHHHHcC----CeecCHHH-HhccCCEEEEccCCC
Q 006212 224 GVSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA--DKARAVG----VELVSFDQ-ALATADFISLHMPLN 294 (656)
Q Consensus 224 g~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~--~~a~~~g----~~~~~l~e-ll~~aDvV~l~~Plt 294 (656)
+..+.||++.|+|.|-.+++++..|...+.+|..++|+... ..+...+ +...+.++ .+.++|+|+.|+|..
T Consensus 13 ~~~~~~k~vlIlGaGGaarai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g 90 (171)
T d1p77a1 13 NWLRPNQHVLILGAGGATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAG 90 (171)
T ss_dssp TCCCTTCEEEEECCSHHHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC-
T ss_pred CCCCCCCEEEEECCcHHHHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccc
Confidence 45788999999999999999999998878899999987522 1111211 12222222 356788888888854
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=95.24 E-value=0.0079 Score=57.24 Aligned_cols=63 Identities=22% Similarity=0.274 Sum_probs=46.0
Q ss_pred CEEEEEecChhHHH-HHHHHhcC-CCEEEE-ECCCCC--hhHHHHcCCe------ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSE-VARRAKGL-GMNVIA-HDPYAP--ADKARAVGVE------LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~-vA~~lk~~-G~~Vi~-~d~~~~--~~~a~~~g~~------~~~l~ell~--~aDvV~l~~P 292 (656)
-+|||||+|.||+. ++..++.. +++|.+ +|++.. ...+++.|+. +.++++++. +.|+|++++|
T Consensus 34 iriaiIG~G~~~~~~~~~~~~~~~~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp 109 (221)
T d1h6da1 34 FGYAIVGLGKYALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILP 109 (221)
T ss_dssp EEEEEECCSHHHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSC
T ss_pred EEEEEEcCcHHHHHHHHHHHHhCCCceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccc
Confidence 47999999999975 56666655 788874 788752 2334555552 347899886 5899999999
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=95.23 E-value=0.037 Score=50.43 Aligned_cols=46 Identities=37% Similarity=0.421 Sum_probs=40.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.+|.|+|.|.||...++.++.+|. +|++.|++. ..+.++++|..
T Consensus 28 ~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~ 75 (174)
T d1e3ia2 28 PGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 75 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCC
Confidence 57899999999999999999999998 688899876 56778888863
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=95.22 E-value=0.0071 Score=55.09 Aligned_cols=85 Identities=20% Similarity=0.346 Sum_probs=55.6
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec-CHHH------HhccCCEEEEccCCCcccc
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV-SFDQ------ALATADFISLHMPLNPTTS 298 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~-~l~e------ll~~aDvV~l~~Plt~~T~ 298 (656)
.|++|.|.|- |.+|....+.++.+|++|++.+... ..+.++++|+..+ +..+ .-..+|+|+-++. + +
T Consensus 27 ~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G--~-~- 102 (171)
T d1iz0a2 27 PGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG--K-E- 102 (171)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC--T-T-
T ss_pred CCCEEEEEeccccchhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc--h-h-
Confidence 5889999995 9999999999999999999988764 4566777886432 2111 1234566655443 1 1
Q ss_pred ccccHHHHhcCCCCcEEEEcC
Q 006212 299 KIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 299 ~li~~~~l~~mK~gailINva 319 (656)
+ ...++.++++..++.+|
T Consensus 103 --~-~~~~~~l~~~G~~v~~G 120 (171)
T d1iz0a2 103 --V-EESLGLLAHGGRLVYIG 120 (171)
T ss_dssp --H-HHHHTTEEEEEEEEEC-
T ss_pred --H-HHHHHHHhcCCcEEEEe
Confidence 1 34455566666666654
|
| >d1otha2 c.78.1.1 (A:185-354) Ornithine transcarbamoylase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.086 Score=47.55 Aligned_cols=94 Identities=19% Similarity=0.168 Sum_probs=63.8
Q ss_pred ccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC--C-hh-------HHHHcCCe---ecCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA--P-AD-------KARAVGVE---LVSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~--~-~~-------~a~~~g~~---~~~l~ell~~aDvV~l~~ 291 (656)
.|.|+||+|||=|+ +-.+++..+..||+++..+.|.. + .+ .+.+.|.. ..++++.+..+|+|..-.
T Consensus 1 sl~gl~I~~vGD~~nV~~Sli~~~~~~g~~~~~~~P~~~~p~~~~~~~~~~~~~~~~~~i~~~~d~~~~~~~advi~~~~ 80 (170)
T d1otha2 1 SLKGLTLSWIGDGNNILHSIMMSAAKFGMHLQAATPKGYEPDASVTKLAEQYAKENGTKLLLTNDPLEAAHGGNVLITDT 80 (170)
T ss_dssp CCTTCEEEEESCSSHHHHHHHTTTGGGTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCCEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCCEEEEEcCchhHHHHHHHHHHHcCCEEEEEeccccCCchHHHHHHHHHHhccCCEEEEEcCHHHHHhhhhheeeec
Confidence 47899999999764 44666666777899999887642 2 11 12233432 238999999999999876
Q ss_pred CCCccc------------cccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPTT------------SKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~T------------~~li~~~~l~~mK~gailINva 319 (656)
...... ...++.+.+..+|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~MHpl 120 (170)
T d1otha2 81 WISMGREEEKKKRLQAFQGYQVTMKTAKVAASDWTFLHCL 120 (170)
T ss_dssp SSCTTCGGGHHHHHHHTTTCCBCHHHHHTSCTTCEEEECS
T ss_pred eecccchhhhHHHHHHHhhhhhhhhhhhccCCceEEecCC
Confidence 533211 1335666777788888888875
|
| >d1pvva2 c.78.1.1 (A:151-313) Ornithine transcarbamoylase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.08 E-value=0.12 Score=46.45 Aligned_cols=94 Identities=20% Similarity=0.237 Sum_probs=65.3
Q ss_pred ccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC--C-hh---HHHH----cCC--e-ecCHHHHhccCCEEEEcc
Q 006212 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA--P-AD---KARA----VGV--E-LVSFDQALATADFISLHM 291 (656)
Q Consensus 226 ~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~--~-~~---~a~~----~g~--~-~~~l~ell~~aDvV~l~~ 291 (656)
.|.|++|++||=|+ +..+++..+..||+++..+.|.. + .+ .+.+ .+. . ..++++.++.+|+|..-.
T Consensus 1 sl~gl~Ia~VGD~~nv~~Sli~~l~~~g~~v~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ea~~~adviy~~~ 80 (163)
T d1pvva2 1 TIKGVKVVYVGDGNNVAHSLMIAGTKLGADVVVATPEGYEPDEKVIKWAEQNAAESGGSFELLHDPVKAVKDADVIYTDV 80 (163)
T ss_dssp CCTTCEEEEESCCCHHHHHHHHHHHHTTCEEEEECCTTCCCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEECC
T ss_pred CcCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEecccccCCChHHHHHHHHhhhcccceEEEecCHHHHhhhccEEeecc
Confidence 47899999999764 77888899999999999998753 2 21 1111 122 2 248999999999998643
Q ss_pred CCC----cc--------ccccccHHHHhcCCCCcEEEEcC
Q 006212 292 PLN----PT--------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt----~~--------T~~li~~~~l~~mK~gailINva 319 (656)
=.. .+ ....++.+.++.+|++++|.-+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~y~v~~~~l~~ak~~~iimHpl 120 (163)
T d1pvva2 81 WASMGQEAEAEERRKIFRPFQVNKDLVKHAKPDYMFMHCL 120 (163)
T ss_dssp CCCSSTTSSSSHHHHHHGGGCBCHHHHHTSCTTCEEEECS
T ss_pred eeecccchhhHHHHHHhhhhhHHHHHHHhhCCCeEEecCC
Confidence 111 01 11345777888888888888886
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=94.94 E-value=0.04 Score=50.22 Aligned_cols=46 Identities=37% Similarity=0.462 Sum_probs=40.7
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.+|.|+|.|.+|...++.++.+| .+|++.|+.. ..+.++++|..
T Consensus 29 ~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~ 76 (176)
T d1d1ta2 29 PGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGAT 76 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCc
Confidence 5889999999999999999999999 5899999886 56788888863
|
| >d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Methanothermus fervidus [TaxId: 2180]
Probab=94.90 E-value=0.015 Score=53.30 Aligned_cols=65 Identities=28% Similarity=0.383 Sum_probs=42.4
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEEEC-CCCChh--HHHHcCCe------------------ec-CHHHHhccCCE
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIAHD-PYAPAD--KARAVGVE------------------LV-SFDQALATADF 286 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~d-~~~~~~--~a~~~g~~------------------~~-~l~ell~~aDv 286 (656)
++|||-|||+||+.+.+.+... .++|.+.+ +..... .+...+.. .. +..++++++|+
T Consensus 2 ~~VgINGfGRIGR~v~R~l~~~~di~vvaInd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~~~vDv 81 (171)
T d1cf2o1 2 KAVAINGYGTVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADI 81 (171)
T ss_dssp EEEEEECCSHHHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSE
T ss_pred eEEEEEcCcHHHHHHHHHHHhCCCceEEEEecCCcHHHHHHHHhcCCceEecccccceeecccCcccCCChhHhhcCCCE
Confidence 4899999999999999988755 58887753 332221 22222221 11 35566778888
Q ss_pred EEEccCCC
Q 006212 287 ISLHMPLN 294 (656)
Q Consensus 287 V~l~~Plt 294 (656)
|+=|+|.-
T Consensus 82 ViEcTG~f 89 (171)
T d1cf2o1 82 VIDCTPEG 89 (171)
T ss_dssp EEECCSTT
T ss_pred EEEccCCC
Confidence 88888743
|
| >d1pg5a2 c.78.1.1 (A:147-299) Aspartate carbamoyltransferase catalytic subunit {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.85 E-value=0.052 Score=48.41 Aligned_cols=93 Identities=14% Similarity=0.103 Sum_probs=60.2
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHhcCCCEEEEE-CCCC---ChhHHHHcCCe--e-cCHHHHhccCCEEEEccCCCcc
Q 006212 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAH-DPYA---PADKARAVGVE--L-VSFDQALATADFISLHMPLNPT 296 (656)
Q Consensus 227 l~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~-d~~~---~~~~a~~~g~~--~-~~l~ell~~aDvV~l~~Plt~~ 296 (656)
|.|++|+|||= |++..+++..+..||++++.+ .|.. ........|.. . .++++.++++|+|..---....
T Consensus 1 l~gl~i~~vGD~~~sRv~~Sl~~~l~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvvy~~~~q~~~ 80 (153)
T d1pg5a2 1 IDGLVFALLGDLKYARTVNSLLRILTRFRPKLVYLISPQLLRARKEILDELNYPVKEVENPFEVINEVDVLYVTRIQKER 80 (153)
T ss_dssp STTCEEEEEECCSSCHHHHHHHHHGGGSCCSEEEEECCGGGCCCHHHHTTCCSCEEEESCGGGTGGGCSEEEEECCCSTT
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHHHcCCeeEEEecccccccchhhcccCCCeEEEEeCHHHHhhcCCeEEEeeeeehh
Confidence 57999999997 559999999999999986544 3321 22223334433 2 3899999999998753211000
Q ss_pred -----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 297 -----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 297 -----------T~~li~~~~l~~mK~gailINva 319 (656)
....++.+.++.+|+++++.-|.
T Consensus 81 ~~~~~~~~~~~~~y~v~~~~l~~~~~~~i~mH~L 114 (153)
T d1pg5a2 81 FVDEMEYEKIKGSYIVSLDLANKMKKDSIILHPL 114 (153)
T ss_dssp SSCHHHHHHHGGGGSBCHHHHHTSCTTCEEECCS
T ss_pred ccchhHHHHHHHhhhhhHHHHhccCCCeEEecCC
Confidence 11224566666677777777765
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.81 E-value=0.011 Score=52.93 Aligned_cols=33 Identities=24% Similarity=0.441 Sum_probs=30.6
Q ss_pred CEEEEE-ecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 230 KTLAVM-GFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 230 ktvGII-GlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+||+|| |.|.||+.+|++|...|++|.+++|+.
T Consensus 1 Mki~vigGaG~iG~alA~~la~~G~~V~l~~R~~ 34 (212)
T d1jaya_ 1 MRVALLGGTGNLGKGLALRLATLGHEIVVGSRRE 34 (212)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTTTCEEEEEESSH
T ss_pred CEEEEEeCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 479999 899999999999999999999999874
|
| >d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=94.62 E-value=0.025 Score=51.83 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=25.9
Q ss_pred CEEEEEecChhHHHHHHHHhcC-CCEEEEE-CCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGL-GMNVIAH-DPY 261 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~-G~~Vi~~-d~~ 261 (656)
.+|||.|||+||+.+++.+... .++|.+. |+.
T Consensus 3 irIaINGfGRIGR~v~Ral~~~~dieiVaINd~~ 36 (172)
T d2czca2 3 VKVGVNGYGTIGKRVAYAVTKQDDMELIGITKTK 36 (172)
T ss_dssp EEEEEECCSHHHHHHHHHHHTCTTEEEEEEEESS
T ss_pred EEEEEECCCHHHHHHHHHHHhCCCceEEEEecCC
Confidence 4799999999999999998754 5888775 443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=94.62 E-value=0.012 Score=53.23 Aligned_cols=45 Identities=27% Similarity=0.321 Sum_probs=36.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.+++.|.
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga 78 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGA 78 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHhhccc
Confidence 37899999999999999999998875 778888775 3456666665
|
| >d1lc0a1 c.2.1.3 (A:2-128,A:247-291) Biliverdin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Biliverdin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.58 E-value=0.004 Score=56.72 Aligned_cols=102 Identities=19% Similarity=0.203 Sum_probs=57.0
Q ss_pred EEEEEecChhHHHHHHHHhcCC----CEEEEECCCCChhHHHHcCCeecCHHHHhc--cCCEEEEccCCCccccccccHH
Q 006212 231 TLAVMGFGKVGSEVARRAKGLG----MNVIAHDPYAPADKARAVGVELVSFDQALA--TADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G----~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~--~aDvV~l~~Plt~~T~~li~~~ 304 (656)
+|||||+|.+|+..++.++... ..+...+... ......+....++++++. +.|+|++++|. .+..-+-..
T Consensus 9 kv~iIG~G~~g~~h~~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~e~l~~~~iD~V~I~tp~--~~H~~~~~~ 84 (172)
T d1lc0a1 9 GVVVVGVGRAGSVRLRDLKDPRSAAFLNLIGFVSRR--ELGSLDEVRQISLEDALRSQEIDVAYICSES--SSHEDYIRQ 84 (172)
T ss_dssp EEEEECCSHHHHHHHHHHTSHHHHTTEEEEEEECSS--CCCEETTEEBCCHHHHHHCSSEEEEEECSCG--GGHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHhCCCCcEEEEEeccchH--HHHHhhccCcCCHHHHHhCCCcchhhhcccc--ccccccccc
Confidence 7999999999999988887542 3444433221 111222345568999986 57899999993 333323233
Q ss_pred HHhcCCCCcEEEEcC-CCchhcHHHHHHhHhc-CCe
Q 006212 305 TFAKMKKGVRIVNVA-RGGVIDEEALVRALDS-GVV 338 (656)
Q Consensus 305 ~l~~mK~gailINva-Rg~ivde~aL~~aL~~-g~i 338 (656)
.+.. ++ .+++.== --.+-+.++|.++.++ |..
T Consensus 85 al~~-gk-~V~~EKP~a~~~~e~~~l~~~a~~~~~~ 118 (172)
T d1lc0a1 85 FLQA-GK-HVLVEYPMTLSFAAAQELWELAAQKGRV 118 (172)
T ss_dssp HHHT-TC-EEEEESCSCSCHHHHHHHHHHHHHTTCC
T ss_pred cccc-ch-hhhcCCCccccHHHHHHHHHHHHHcCCe
Confidence 3332 22 2444421 1233445556554333 444
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.08 Score=46.91 Aligned_cols=94 Identities=21% Similarity=0.248 Sum_probs=57.3
Q ss_pred CEEEEEec-ChhHHHHHHHHh---cCCCEEEEECCCCCh-hHHHHcC-C------e-e--cCHHHHhccCCEEEEccC--
Q 006212 230 KTLAVMGF-GKVGSEVARRAK---GLGMNVIAHDPYAPA-DKARAVG-V------E-L--VSFDQALATADFISLHMP-- 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk---~~G~~Vi~~d~~~~~-~~a~~~g-~------~-~--~~l~ell~~aDvV~l~~P-- 292 (656)
.+|+|||. |.+|+.+|..++ .+.-++..+|..... ..+.++. . . . .+..+.+++||+|+++.-
T Consensus 1 MKV~IiGaaG~VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~~ 80 (145)
T d2cmda1 1 MKVAVLGAAGGIGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGVR 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSCC
T ss_pred CEEEEEcCCChHHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCcc
Confidence 47999995 999999999864 356799999965422 1222221 1 0 1 223457899999999874
Q ss_pred CCcc-ccc-cc--cH-------HHHhcCCCCcEEEEcCCCchhc
Q 006212 293 LNPT-TSK-IF--ND-------ETFAKMKKGVRIVNVARGGVID 325 (656)
Q Consensus 293 lt~~-T~~-li--~~-------~~l~~mK~gailINvaRg~ivd 325 (656)
.++. ++. ++ |. +.+.+..|+++++.++ ..+|
T Consensus 81 ~k~g~~R~dl~~~N~~i~~~v~~~i~~~~p~aivivvt--NPvD 122 (145)
T d2cmda1 81 RKPGMDRSDLFNVNAGIVKNLVQQVAKTCPKACIGIIT--NPVN 122 (145)
T ss_dssp CCTTCCGGGGHHHHHHHHHHHHHHHHHHCTTSEEEECS--SSHH
T ss_pred CCCCcchhhHHHHHHHHHHHHHHHHHhhCCCcEEEEcc--CCch
Confidence 2221 221 22 11 2233456788999986 3445
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.32 E-value=0.014 Score=52.94 Aligned_cols=45 Identities=20% Similarity=0.345 Sum_probs=37.4
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.|. |.+|....+.++.+|++|++.+... ..+.+++.|+
T Consensus 28 ~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga 74 (174)
T d1yb5a2 28 AGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQNGA 74 (174)
T ss_dssp TTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTC
T ss_pred CCCEEEEEeccccccccccccccccCcccccccccccccccccccCc
Confidence 5889999995 9999999999999999999987654 3455667776
|
| >d1vlva2 c.78.1.1 (A:153-313) Ornithine transcarbamoylase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Thermotoga maritima [TaxId: 2336]
Probab=94.31 E-value=0.17 Score=45.11 Aligned_cols=93 Identities=19% Similarity=0.235 Sum_probs=61.5
Q ss_pred cCCCEEEEEec--ChhHHHHHHHHhcCCCEEEEECCCC--C-hh-------HHHHcCC--ee-cCHHHHhccCCEEEEcc
Q 006212 227 LVGKTLAVMGF--GKVGSEVARRAKGLGMNVIAHDPYA--P-AD-------KARAVGV--EL-VSFDQALATADFISLHM 291 (656)
Q Consensus 227 l~gktvGIIGl--G~IG~~vA~~lk~~G~~Vi~~d~~~--~-~~-------~a~~~g~--~~-~~l~ell~~aDvV~l~~ 291 (656)
|.|++|++||= .++-.+++..+..||+++...-|.. + .. .+.+.+. .. .++++.++.+|+|..-.
T Consensus 1 l~g~ki~~vGD~~nnV~~Sli~~~~~~g~~i~~~~P~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~ai~~aDviyt~~ 80 (161)
T d1vlva2 1 LKGVKVVFMGDTRNNVATSLMIACAKMGMNFVACGPEELKPRSDVFKRCQEIVKETDGSVSFTSNLEEALAGADVVYTDV 80 (161)
T ss_dssp STTCEEEEESCTTSHHHHHHHHHHHHTTCEEEEESCGGGCCCHHHHHHHHHHHHHHCCEEEEESCHHHHHTTCSEEEECC
T ss_pred CCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEecchhhhhhhhHHHHHHHHHhhcCCceEEEecHHHhhhhhhheeccc
Confidence 67999999994 5799999999999999999987742 2 21 1223333 22 38999999999998855
Q ss_pred CCCcc------------ccc-cccHHHHhcCCCCcEEEEcC
Q 006212 292 PLNPT------------TSK-IFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 292 Plt~~------------T~~-li~~~~l~~mK~gailINva 319 (656)
-.... ... ..+......+|+++++.-|.
T Consensus 81 ~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~MH~l 121 (161)
T d1vlva2 81 WASMGEEDKEKERMALLKPYQVNERVMEMTGKSETIFMHCL 121 (161)
T ss_dssp CC----------CHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred eeeecccccchhhhccccceeeeehhhhcccCCCeeEecCC
Confidence 32110 011 12223333467778888775
|
| >d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Prephenate dehydratase C-terminal domain species: Staphylococcus aureus [TaxId: 1280]
Probab=94.31 E-value=0.053 Score=43.31 Aligned_cols=60 Identities=15% Similarity=0.244 Sum_probs=44.2
Q ss_pred EEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCCCCCHH---HHHHHhc
Q 006212 561 ILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPNQD---SLKEIGK 620 (656)
Q Consensus 561 Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~~~~~e---~l~~L~~ 620 (656)
+++...|+||.+..+.+.++++|||+..++--..+ ..++-.-.++++....+. ++++|++
T Consensus 5 ~i~~~~d~pGaL~~vL~~F~~~~INLt~IeSRP~~~~~~~Y~F~id~~g~~~~~~~~~l~~L~~ 68 (80)
T d2qmwa2 5 LITPMHDKPGLLASVLNTFALFNINLSWIESRPLKTQLGMYRFFVQADSAITTDIKKVIAILET 68 (80)
T ss_dssp EEEESSCCTTHHHHHHHHHHTTTCCEEEEEEEECSSSTTCEEEEEEESCCSCHHHHHHHHHHHH
T ss_pred EEEeCCCCCCHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEecCCcHHHHHHHHHHHH
Confidence 34457899999999999999999999999874322 234566678898877664 4455544
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.24 E-value=0.024 Score=47.83 Aligned_cols=62 Identities=16% Similarity=0.116 Sum_probs=46.5
Q ss_pred CCEEEEEecC----------hhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-CHHHHhccCCEEEEcc
Q 006212 229 GKTLAVMGFG----------KVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-SFDQALATADFISLHM 291 (656)
Q Consensus 229 gktvGIIGlG----------~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~ 291 (656)
.|+|||+|+= .-.-.+.+.|+..|++|.+|||+..... ...+.... ++++++..||+|++..
T Consensus 15 ~k~I~ilGl~fK~n~dD~R~Sp~i~ii~~L~~~g~~v~iyDP~v~~~~-~~~~~~~~~~l~~~~~~sDiII~~~ 87 (108)
T d1dlja3 15 VKVVGVYRLIMKSNSDNFRESAIKDVIDILKSKDIKIIIYEPMLNKLE-SEDQSVLVNDLENFKKQANIIVTNR 87 (108)
T ss_dssp SCEEEEECCCSSTTCSCCTTCHHHHHHHHHHTSSCEEEEECTTCSCCC-TTCCSEECCCHHHHHHHCSEEECSS
T ss_pred CCEEEEEEEEECCCCcchhhhhHHHHHHHHhccccceeeecCCcChhH-hccCCEEEeCHHHHHhhCCEEEEcC
Confidence 4699999983 3567789999999999999999974321 12344444 8999999999876543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=94.17 E-value=0.029 Score=49.66 Aligned_cols=63 Identities=10% Similarity=0.106 Sum_probs=44.7
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEECCCCCh-----hHHHHcCCeec-----C---HHH-HhccCCEEEEccCC
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPA-----DKARAVGVELV-----S---FDQ-ALATADFISLHMPL 293 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~-----~~a~~~g~~~~-----~---l~e-ll~~aDvV~l~~Pl 293 (656)
.+-|+|+|.+|+.+++.|...|.+|++.|..... +.....|+.++ + |++ -+.+||.|+++++.
T Consensus 5 HiII~G~g~~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~ 81 (153)
T d1id1a_ 5 HFIVCGHSILAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDN 81 (153)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSC
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEcccc
Confidence 4889999999999999999999999998765421 12223455432 2 222 36789999888874
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=94.15 E-value=0.018 Score=49.61 Aligned_cols=81 Identities=17% Similarity=0.257 Sum_probs=49.9
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeec-----CHHH----HhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELV-----SFDQ----ALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~-----~l~e----ll~~aDvV~l~~Plt~~T~~l 300 (656)
|.+-|+|+|.+|+.+++.|++.+..|+-.|+. ..+.....|+.++ +.+- -+.+|+.++++.+... ..+
T Consensus 1 kHivI~G~g~~g~~l~~~L~~~~i~vi~~d~~-~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~--~n~ 77 (129)
T d2fy8a1 1 RHVVICGWSESTLECLRELRGSEVFVLAEDEN-VRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDS--ETI 77 (129)
T ss_dssp CCEEEESCCHHHHHHHHTSCGGGEEEEESCTT-HHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHH--HHH
T ss_pred CEEEEECCCHHHHHHHHHHcCCCCEEEEcchH-HHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchh--hhH
Confidence 45889999999999999998766544434433 2344556676543 2222 2678999999887433 222
Q ss_pred ccHHHHhcCCCCc
Q 006212 301 FNDETFAKMKKGV 313 (656)
Q Consensus 301 i~~~~l~~mK~ga 313 (656)
.-......+.|..
T Consensus 78 ~~~~~~r~~~~~~ 90 (129)
T d2fy8a1 78 HCILGIRKIDESV 90 (129)
T ss_dssp HHHHHHHHHCSSS
T ss_pred HHHHHHHHHCCCc
Confidence 2233344455553
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=93.80 E-value=0.091 Score=47.56 Aligned_cols=46 Identities=30% Similarity=0.374 Sum_probs=40.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCe
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.++++|..
T Consensus 27 ~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~ 74 (174)
T d1p0fa2 27 PGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGAT 74 (174)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred CCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCc
Confidence 58899999999999999999999985 899999876 56778888864
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.56 E-value=0.02 Score=51.41 Aligned_cols=45 Identities=29% Similarity=0.419 Sum_probs=37.2
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|. |.+|...++.++..| .+|++.+++. ..+.+++.|+
T Consensus 27 ~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga 74 (170)
T d1jvba2 27 PTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGA 74 (170)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHHHcCC
Confidence 4789999995 999999999999888 5899999876 4466777775
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=93.42 E-value=0.053 Score=50.28 Aligned_cols=65 Identities=31% Similarity=0.339 Sum_probs=48.6
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCCeec------CHH----HHh--ccCCEEEEccC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGVELV------SFD----QAL--ATADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~~~~------~l~----ell--~~aDvV~l~~P 292 (656)
.|.+|.|+|.|.+|...++.++.+|. +|++.|+.. ..+.+++.|...+ ++. ++. ..+|+++-++.
T Consensus 25 ~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~i~~~t~g~g~D~vid~vG 103 (195)
T d1kola2 25 PGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKAQGFEIADLSLDTPLHEQIAALLGEPEVDCAVDAVG 103 (195)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCEEEETTSSSCHHHHHHHHHSSSCEEEEEECCC
T ss_pred CCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhhccccEEEeCCCcCHHHHHHHHhCCCCcEEEEECcc
Confidence 48899999999999999999998887 899999876 4577888887432 222 222 13688877765
|
| >d1ml4a2 c.78.1.1 (A:152-308) Aspartate carbamoyltransferase catalytic subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.34 E-value=0.13 Score=45.72 Aligned_cols=66 Identities=12% Similarity=0.238 Sum_probs=51.0
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHhcCCCEEEEECCCC--Ch----hHHHHcCCe---ecCHHHHhccCCEEEEccC
Q 006212 227 LVGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYA--PA----DKARAVGVE---LVSFDQALATADFISLHMP 292 (656)
Q Consensus 227 l~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~d~~~--~~----~~a~~~g~~---~~~l~ell~~aDvV~l~~P 292 (656)
|.|+||+|||= +++..+++..+..||+++..+.|.. +. ..+.+.+.. ..++++.++.+|+|....-
T Consensus 2 l~gl~i~~vGD~~~srV~~Sli~~~~~~g~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~av~~aDvvy~~~~ 79 (157)
T d1ml4a2 2 IDGLKIGLLGDLKYGRTVHSLAEALTFYDVELYLISPELLRMPRHIVEELREKGMKVVETTTLEDVIGKLDVLYVTRI 79 (157)
T ss_dssp SSSEEEEEESCTTTCHHHHHHHHHGGGSCEEEEEECCGGGCCCHHHHHHHHHTTCCEEEESCTHHHHTTCSEEEECCC
T ss_pred cCCCEEEEEcCCccChHHHHHHHHHHhcCCcEEEEccchhhcchHHHHHHHhhcccceeecCHHHhhccCcEEEeecc
Confidence 67999999998 6899999999999999999988753 21 123333432 3489999999999887554
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=93.07 E-value=0.069 Score=46.78 Aligned_cols=101 Identities=18% Similarity=0.270 Sum_probs=69.8
Q ss_pred CCCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccccc
Q 006212 228 VGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 228 ~gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.-|+|+|||. ++.|..+++.|+.+|+++..+.++...+. -.|... .++.++-..-|++++++| .+.+..++.
T Consensus 12 ~pksIAVVGaS~~~~k~g~~v~~~L~~~g~~~~~v~~~~~~~~--i~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~ 88 (136)
T d1iuka_ 12 QAKTIAVLGAHKDPSRPAHYVPRYLREQGYRVLPVNPRFQGEE--LFGEEAVASLLDLKEPVDILDVFRP-PSALMDHLP 88 (136)
T ss_dssp HCCEEEEETCCSSTTSHHHHHHHHHHHTTCEEEEECGGGTTSE--ETTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHH
T ss_pred CCCeEEEEeecCCCCCchHHHHHHHhcCCCCceEEEeccccce--eeceecccchhhccCCCceEEEecc-HHHHHHHHH
Confidence 4578999997 78999999999999999999988642111 134443 378888888999999999 344555554
Q ss_pred HHHHhcCCCCcEEEEcCCCchhcHHHHHHhHhcC
Q 006212 303 DETFAKMKKGVRIVNVARGGVIDEEALVRALDSG 336 (656)
Q Consensus 303 ~~~l~~mK~gailINvaRg~ivde~aL~~aL~~g 336 (656)
+. . .+...++++..| ..+++....+.+.|
T Consensus 89 ~~-~-~~g~k~i~~q~G---~~~~e~~~~a~~~G 117 (136)
T d1iuka_ 89 EV-L-ALRPGLVWLQSG---IRHPEFEKALKEAG 117 (136)
T ss_dssp HH-H-HHCCSCEEECTT---CCCHHHHHHHHHTT
T ss_pred HH-H-hhCCCeEEEecC---ccCHHHHHHHHHcC
Confidence 32 2 345667777654 34565555555555
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.97 E-value=0.038 Score=49.96 Aligned_cols=45 Identities=20% Similarity=0.281 Sum_probs=35.9
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.| .|.+|...++.++.+|++|++.+... ..+.+++.|+
T Consensus 25 ~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 25 PGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp TTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred CCCEEEEECCCCCcccccchhhccccccceeeecccccccccccccc
Confidence 478999988 59999999999999999999877653 3445555664
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=92.84 E-value=0.67 Score=41.13 Aligned_cols=45 Identities=38% Similarity=0.490 Sum_probs=38.3
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC-CEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG-MNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G-~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.||.|+|.|-+|...+..++.+| .+|++.|++. ..+.+++.|.
T Consensus 28 ~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga 74 (176)
T d2jhfa2 28 QGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCC
Confidence 5899999999999999999999987 5899999876 4566677765
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.79 E-value=0.084 Score=46.79 Aligned_cols=62 Identities=13% Similarity=0.192 Sum_probs=42.8
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCC--EEEEECCCCChhHH----HHc-------C--Cee----cCHHHHhccCCEEEE
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADKA----RAV-------G--VEL----VSFDQALATADFISL 289 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a----~~~-------g--~~~----~~l~ell~~aDvV~l 289 (656)
.+|+||| .|.+|+.+|..+...|. ++..||.......+ .++ . ... .+-.+.+++||+|++
T Consensus 1 MKV~IiGA~G~VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVi 80 (145)
T d1hyea1 1 MKVTIIGASGRVGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVII 80 (145)
T ss_dssp CEEEEETTTSHHHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEE
T ss_pred CEEEEECCCChHHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEE
Confidence 3799999 59999999999987774 89999976432211 111 1 111 123457889999999
Q ss_pred cc
Q 006212 290 HM 291 (656)
Q Consensus 290 ~~ 291 (656)
+.
T Consensus 81 tA 82 (145)
T d1hyea1 81 TS 82 (145)
T ss_dssp CC
T ss_pred ec
Confidence 84
|
| >d1o6za1 c.2.1.5 (A:22-162) Malate dehydrogenase {Archaeon Haloarcula marismortui [TaxId: 2238]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Haloarcula marismortui [TaxId: 2238]
Probab=92.72 E-value=0.15 Score=44.85 Aligned_cols=89 Identities=15% Similarity=0.173 Sum_probs=54.2
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCC--EEEEECCCCChhH----HHHc----CC----ee-cCHHHHhccCCEEEEccCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADK----ARAV----GV----EL-VSFDQALATADFISLHMPL 293 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~----a~~~----g~----~~-~~l~ell~~aDvV~l~~Pl 293 (656)
.+|+||| .|.+|+.+|..+...+. ++..||.....+. +.++ .. .. ..-.+.+++||+|+++.-.
T Consensus 1 sKV~IiGaaG~VG~~~A~~l~~~~l~~el~L~Di~~~~~~~~g~a~Dl~~~~~~~~~~~i~~~~~~~~~~aDiVvitaG~ 80 (142)
T d1o6za1 1 TKVSVVGAAGTVGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGI 80 (142)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred CeEEEECCCCcHHHHHHHHHHhCCCCCEEEEEecCCcccccceeecchhhcccccCCceEeeCCHHHhhhcCEEEEeccc
Confidence 3799999 69999999999986654 8999995422211 1111 11 11 1223456899999997542
Q ss_pred Cccccccc-------cH-------HHHhcCCCCcEEEEcC
Q 006212 294 NPTTSKIF-------ND-------ETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~T~~li-------~~-------~~l~~mK~gailINva 319 (656)
+...++- |. ..+....|+++++.++
T Consensus 81 -~~~~g~~R~dl~~~N~~I~~~i~~~i~~~~p~~i~ivvt 119 (142)
T d1o6za1 81 -PRQPGQTRIDLAGDNAPIMEDIQSSLDEHNDDYISLTTS 119 (142)
T ss_dssp -CCCTTCCHHHHHHHHHHHHHHHHHHHHTTCSCCEEEECC
T ss_pred -ccccCCchhhHHHHHHHHHHHHHHHHHhcCCCceEEEec
Confidence 2222221 11 2334467788998885
|
| >d1dxha2 c.78.1.1 (A:151-335) Ornithine transcarbamoylase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.56 E-value=0.28 Score=44.83 Aligned_cols=94 Identities=19% Similarity=0.210 Sum_probs=64.5
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC---Chh-------HHHHcCCe--e-cCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA---PAD-------KARAVGVE--L-VSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~---~~~-------~a~~~g~~--~-~~l~ell~~aDvV~l~ 290 (656)
.|.|.||++||=| ++..+++..+..||+++....|.. +.+ .+...|.. . .++++.++.+|+|..-
T Consensus 2 ~l~~lkia~vGD~~nnV~~Sli~~~~~~G~~l~l~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eai~~aDvVyt~ 81 (185)
T d1dxha2 2 PLHDISYAYLGDARNNMGNSLLLIGAKLGMDVRIAAPKALWPHDEFVAQCKKFAEESGAKLTLTEDPKEAVKGVDFVHTD 81 (185)
T ss_dssp CGGGCEEEEESCCSSHHHHHHHHHHHHTTCEEEEECCGGGSCCHHHHHHHHHHHHHHTCEEEEESCHHHHTTTCSEEEEC
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHHHcCCEEEEEccHHHHhhhHHHHHHHHHhhccCCeEEEEeChhhccccccEEEee
Confidence 4789999999954 899999999999999999998842 221 11223432 2 3899999999999875
Q ss_pred cCCCcc--c-----------ccccc-HHHHhcCCCCcEEEEcC
Q 006212 291 MPLNPT--T-----------SKIFN-DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Plt~~--T-----------~~li~-~~~l~~mK~gailINva 319 (656)
.=.... . ...++ ......+|+++++.-|.
T Consensus 82 ~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ak~~~i~MH~L 124 (185)
T d1dxha2 82 VWVSMGEPVEAWGERIKELLPYQVNMEIMKATGNPRAKFMHCL 124 (185)
T ss_dssp CCSCSSSCGGGCHHHHHHHGGGCBCHHHHHTTCCSSCEEEECS
T ss_pred hhhhhhhhhhhHHHHHHHhhhheeccHHHHhhcCCCEEEEcCC
Confidence 431111 0 01222 33444578999999987
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=92.28 E-value=0.21 Score=44.69 Aligned_cols=63 Identities=17% Similarity=0.156 Sum_probs=41.3
Q ss_pred CEEEEEecChhHHHHHHH--Hh---cC-CCEEEEECCCCChhH-HHH-------cCCe---ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGFGKVGSEVARR--AK---GL-GMNVIAHDPYAPADK-ARA-------VGVE---LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~--lk---~~-G~~Vi~~d~~~~~~~-a~~-------~g~~---~~~l~ell~~aDvV~l~~P 292 (656)
.+|.|||.|.+|.+.+-. ++ .+ +-++..+|....... ..+ .... ..+.++.+++||+|++++-
T Consensus 1 mKIaiIGaGs~g~~~~~~~l~~~~~~~~~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~ 80 (162)
T d1up7a1 1 MRIAVIGGGSSYTPELVKGLLDISEDVRIDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFR 80 (162)
T ss_dssp CEEEEETTTCTTHHHHHHHHHHHTTTSCCCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCC
T ss_pred CEEEEECCCHHHHHHHHHHHHhcccccCccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecc
Confidence 379999999998776643 22 22 358999998652211 111 1111 1368899999999999875
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=92.16 E-value=0.22 Score=46.16 Aligned_cols=98 Identities=23% Similarity=0.372 Sum_probs=71.9
Q ss_pred HHHHHHhcCCCEEEEECC-----CCChhHHHHcCCeec-CHHHHhccCCEEEE-ccCCCccccccccHHHHhcCCCCcEE
Q 006212 243 EVARRAKGLGMNVIAHDP-----YAPADKARAVGVELV-SFDQALATADFISL-HMPLNPTTSKIFNDETFAKMKKGVRI 315 (656)
Q Consensus 243 ~vA~~lk~~G~~Vi~~d~-----~~~~~~a~~~g~~~~-~l~ell~~aDvV~l-~~Plt~~T~~li~~~~l~~mK~gail 315 (656)
..++.|...|++|++=.- .-+.+...+.|+..+ +-++++.++|+|+- ..|...+ .+.+.+..||+|.++
T Consensus 21 ~~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~e----~~~~ei~~lk~g~~l 96 (194)
T d1l7da2 21 EVVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTAE----EGTDEVALIKEGAVL 96 (194)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCGG----GSCCGGGGSCTTCEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCcccc----cchhHhhhccCceEE
Confidence 467888899999998532 124556677899876 67899999998874 4553332 234567889999999
Q ss_pred EEcCCCchhcHHHHHHhHhcCCeEEEEeecc
Q 006212 316 VNVARGGVIDEEALVRALDSGVVAQAALDVF 346 (656)
Q Consensus 316 INvaRg~ivde~aL~~aL~~g~i~gA~lDV~ 346 (656)
|..-- .....++.++|.+.++-..++|..
T Consensus 97 i~~l~--p~~~~~~~~~l~~~~it~~a~e~i 125 (194)
T d1l7da2 97 MCHLG--ALTNRPVVEALTKRKITAYAMELM 125 (194)
T ss_dssp EEECC--GGGCHHHHHHHHHTTCEEEEGGGC
T ss_pred EEecc--cccchhHHHHHHhcCceEEeeecc
Confidence 98753 445677888899988987777765
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=92.15 E-value=0.16 Score=45.30 Aligned_cols=45 Identities=31% Similarity=0.412 Sum_probs=38.0
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|-+|...++.++.+|. +|++.|+.. ..+.++++|.
T Consensus 28 ~G~tVlI~GaGGvG~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa 74 (176)
T d2fzwa2 28 PGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGA 74 (176)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTC
T ss_pred CCCEEEEecchhHHHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCC
Confidence 48899999999999999999999985 688888775 4567788886
|
| >d1s6ya1 c.2.1.5 (A:4-172) 6-phospho-beta-glucosidase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.92 E-value=0.32 Score=43.81 Aligned_cols=64 Identities=25% Similarity=0.236 Sum_probs=41.9
Q ss_pred CEEEEEecChhH--HHHHHHHhc---CC-CEEEEECCCCChhHHH-----------HcCC--e---ecCHHHHhccCCEE
Q 006212 230 KTLAVMGFGKVG--SEVARRAKG---LG-MNVIAHDPYAPADKAR-----------AVGV--E---LVSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGlG~IG--~~vA~~lk~---~G-~~Vi~~d~~~~~~~a~-----------~~g~--~---~~~l~ell~~aDvV 287 (656)
.+|.|||.|..| ..++..++. +. -++..+|......+++ ..+. . ..+..+.++.||+|
T Consensus 2 ~KI~iIGaGs~~~~~~~~~l~~~~~~~~~~eI~L~Di~e~~~~~~~~d~~~~~~~~~~~~~~~~~~~td~~~al~gaDvV 81 (169)
T d1s6ya1 2 LKIATIGGGSSYTPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFV 81 (169)
T ss_dssp EEEEEETTTCTTHHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEE
T ss_pred cEEEEECCChhhHHHHHHHHHHhccccCCCEEEEEcCCccHHHHHHHHHHHHHHHHhcCCCceeeecCCchhhcCCCCEE
Confidence 379999999776 445555553 32 4899999865321111 1122 1 23788899999999
Q ss_pred EEccCC
Q 006212 288 SLHMPL 293 (656)
Q Consensus 288 ~l~~Pl 293 (656)
+++...
T Consensus 82 v~ta~~ 87 (169)
T d1s6ya1 82 TTQFRV 87 (169)
T ss_dssp EECCCT
T ss_pred EEcccc
Confidence 999863
|
| >d2at2a2 c.78.1.1 (A:145-295) Aspartate carbamoyltransferase catalytic subunit {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Bacillus subtilis [TaxId: 1423]
Probab=91.91 E-value=0.097 Score=46.64 Aligned_cols=61 Identities=26% Similarity=0.330 Sum_probs=47.1
Q ss_pred CCCEEEEEec---ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCe-ecCHHHHhccCCEEEEc
Q 006212 228 VGKTLAVMGF---GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVE-LVSFDQALATADFISLH 290 (656)
Q Consensus 228 ~gktvGIIGl---G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~-~~~l~ell~~aDvV~l~ 290 (656)
.|.+|+|||= +++..+++..+..||+++....|..-.. ....+. ..++++.++.+|+|..-
T Consensus 2 ~gl~i~~vGD~~~srv~~Sl~~~~~~~g~~~~i~~P~~~~~--~~~~~~~~~~~~ea~~~aDviy~~ 66 (151)
T d2at2a2 2 KGLTVSIHGDIKHSRVARSNAEVLTRLGARVLFSGPSEWQD--EENTFGTYVSMDEAVESSDVVMLL 66 (151)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCcccccCCchhhc--cccceeEEEechhccccCceeeee
Confidence 5899999997 6899999999999999999888753111 112233 34899999999999764
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=91.86 E-value=0.1 Score=44.41 Aligned_cols=98 Identities=17% Similarity=0.224 Sum_probs=65.8
Q ss_pred CEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCccccccccHH
Q 006212 230 KTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFNDE 304 (656)
Q Consensus 230 ktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~~ 304 (656)
|+|+|||. |..|..+.+.|+.+|++|+..+|.... -.|... -+++++-..-|++++++| .+.+..++. +
T Consensus 2 KsIAVvGaS~~~~k~g~~v~~~L~~~g~~V~pVnP~~~~----i~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~-~ 75 (116)
T d1y81a1 2 RKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDE----IEGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAK-E 75 (116)
T ss_dssp CEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSE----ETTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHH-H
T ss_pred cEEEEEcccCCCCCcHHHHHHHHHHCCCEEEEEcccccc----ccCccccccchhccccceEEEEEeC-HHHHHHHHH-H
Confidence 78999995 678999999999999999999987421 135543 378888888999999999 333444443 2
Q ss_pred HHhcCCCCcEEEEcCCCchhcHHHHHHhHhcCCe
Q 006212 305 TFAKMKKGVRIVNVARGGVIDEEALVRALDSGVV 338 (656)
Q Consensus 305 ~l~~mK~gailINvaRg~ivde~aL~~aL~~g~i 338 (656)
.. .+...++++.-+ ..++ ++.+.+++..+
T Consensus 76 ~~-~~g~k~v~~~~g---~~~~-~~~~~a~~~gi 104 (116)
T d1y81a1 76 AV-EAGFKKLWFQPG---AESE-EIRRFLEKAGV 104 (116)
T ss_dssp HH-HTTCCEEEECTT---SCCH-HHHHHHHHHTC
T ss_pred HH-hcCCceEEeccc---hhhH-HHHHHHHHcCC
Confidence 22 244556666543 3333 44455554333
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=91.63 E-value=0.12 Score=49.09 Aligned_cols=63 Identities=11% Similarity=0.171 Sum_probs=43.1
Q ss_pred CEEEEEecChhH----HHHHHHHhcC--CCEEEE-ECCCCC--hhHHHHcCCe----ecCHHHHhc--cCCEEEEccC
Q 006212 230 KTLAVMGFGKVG----SEVARRAKGL--GMNVIA-HDPYAP--ADKARAVGVE----LVSFDQALA--TADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGlG~IG----~~vA~~lk~~--G~~Vi~-~d~~~~--~~~a~~~g~~----~~~l~ell~--~aDvV~l~~P 292 (656)
-+|||||+|.+| +.-...++.. +++|.+ +|+... ...+++.++. +.++++++. +-|+|++|+|
T Consensus 17 irvgiIG~G~~~~~~~~~h~~ai~~~~~~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp 94 (237)
T d2nvwa1 17 IRVGFVGLTSGKSWVAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVK 94 (237)
T ss_dssp EEEEEECCCSTTSHHHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSC
T ss_pred eEEEEEecCccccHHHHHHHHHHHhcCCCeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCC
Confidence 479999999754 4444456543 688885 788752 2334555542 458999985 5789999998
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.52 E-value=0.15 Score=44.70 Aligned_cols=85 Identities=15% Similarity=0.121 Sum_probs=60.9
Q ss_pred CCCEEEEEec----ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccccc
Q 006212 228 VGKTLAVMGF----GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKIFN 302 (656)
Q Consensus 228 ~gktvGIIGl----G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~ 302 (656)
.-|+|+|||. |+.|..+++.|+.+|++|+..+|... .-.|... .++.++-..-|++++++|. ..+..++.
T Consensus 18 ~~ksIAVVGaS~~~~~~g~~v~~~L~~~g~~v~pVnP~~~----~i~G~~~~~sl~dlp~~iD~v~i~vp~-~~~~~~~~ 92 (139)
T d2d59a1 18 RYKKIALVGASPKPERDANIVMKYLLEHGYDVYPVNPKYE----EVLGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVE 92 (139)
T ss_dssp HCCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCS----EETTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHH
T ss_pred cCCeEEEEeecCCCCCchHHHHHHHHHCCCEEEEECCccc----ccCCCcccccccccCccceEEEEEeCH-HHHHHHHH
Confidence 4589999996 57999999999999999999998742 1135543 4788888899999999992 22333433
Q ss_pred HHHHhcCCCCcEEEEcC
Q 006212 303 DETFAKMKKGVRIVNVA 319 (656)
Q Consensus 303 ~~~l~~mK~gailINva 319 (656)
+ .. .+...++++..|
T Consensus 93 e-~~-~~g~k~v~~~~G 107 (139)
T d2d59a1 93 Q-AI-KKGAKVVWFQYN 107 (139)
T ss_dssp H-HH-HHTCSEEEECTT
T ss_pred H-HH-HhCCCEEEEecc
Confidence 2 22 245557777655
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=91.51 E-value=0.09 Score=50.71 Aligned_cols=38 Identities=29% Similarity=0.355 Sum_probs=33.9
Q ss_pred cccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.+|+||++.|.| -+.||+++|++|...|++|+..+++.
T Consensus 2 f~L~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~ 40 (258)
T d1ae1a_ 2 WSLKGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNE 40 (258)
T ss_dssp CCCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 368999999998 56699999999999999999999864
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=91.18 E-value=0.1 Score=48.37 Aligned_cols=33 Identities=33% Similarity=0.421 Sum_probs=31.4
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
||+|.|||-|.-|-..|..|+..|++|++++..
T Consensus 1 ~KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~ 33 (373)
T d1seza1 1 AKRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAE 33 (373)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTSCEEEEECSS
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCCEEEEeCC
Confidence 799999999999999999999999999999865
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=91.11 E-value=0.14 Score=49.14 Aligned_cols=36 Identities=17% Similarity=0.192 Sum_probs=32.5
Q ss_pred cCCCEEEEEec-C--hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGF-G--KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGl-G--~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|+||++.|.|- | -||.++|+.|...|++|+..+++.
T Consensus 3 L~gK~alITGaag~~GIG~AiA~~la~~Ga~V~i~~r~~ 41 (274)
T d2pd4a1 3 LKGKKGLIVGVANNKSIAYGIAQSCFNQGATLAFTYLNE 41 (274)
T ss_dssp TTTCEEEEECCCSTTSHHHHHHHHHHTTTCEEEEEESST
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 78999999996 4 499999999999999999998764
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.05 E-value=0.1 Score=49.95 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=34.6
Q ss_pred cccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.+|.||++.|-|.+. ||+++|+.+...|++|+..|++.
T Consensus 3 ~~l~Gkv~lITGas~GIG~~ia~~la~~G~~V~l~~r~~ 41 (244)
T d1yb1a_ 3 KSVTGEIVLITGAGHGIGRLTAYEFAKLKSKLVLWDINK 41 (244)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 368999999998876 99999999999999999999864
|
| >d1ekxa2 c.78.1.1 (A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=90.93 E-value=0.33 Score=43.08 Aligned_cols=93 Identities=13% Similarity=0.197 Sum_probs=59.5
Q ss_pred cCCCEEEEEec---ChhHHHHHHHHhcCC-CEEEEECCCC--C-h---hHHHHcCCee---cCHHHHhccCCEEEEccCC
Q 006212 227 LVGKTLAVMGF---GKVGSEVARRAKGLG-MNVIAHDPYA--P-A---DKARAVGVEL---VSFDQALATADFISLHMPL 293 (656)
Q Consensus 227 l~gktvGIIGl---G~IG~~vA~~lk~~G-~~Vi~~d~~~--~-~---~~a~~~g~~~---~~l~ell~~aDvV~l~~Pl 293 (656)
+.|.+|++||= |++..+++..+..+| +.++...|.. + . +.+...|... .++++.++++|+|..-.-.
T Consensus 2 l~gl~i~~vGD~~nsrv~~Sli~~l~~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~~~~~ 81 (160)
T d1ekxa2 2 LDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYMTRVQ 81 (160)
T ss_dssp SSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHHTTCCEEECSCSTTTGGGCSEEEECCCC
T ss_pred CCCCEEEEEcCCCccHHHHHHHHHHHHcCCCeEEeeccchhhhhHHHHHHHhhhccccccccCHHHHhCcCceEEeeccc
Confidence 67999999996 679999999999996 5666666542 1 1 2334445432 3799999999999864322
Q ss_pred Ccc----------ccccccHHHHhcCCCCcEEEEcC
Q 006212 294 NPT----------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 294 t~~----------T~~li~~~~l~~mK~gailINva 319 (656)
... ....++.+.+..+++++++.-|.
T Consensus 82 ~e~~~~~~~~~~~~~~~~~~~~~~~a~~~~i~mHcL 117 (160)
T d1ekxa2 82 KERLDPSEYANVKAQFVLRASDLHNAKANMKVLHPL 117 (160)
T ss_dssp GGGCCGGGGGGCSCSCCBCGGGGTTCCTTCEEECCS
T ss_pred ccccchHHHHHHHHHhhccHHHHHhcCcceeeecCC
Confidence 110 11222445555566666666653
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=90.36 E-value=0.088 Score=45.70 Aligned_cols=70 Identities=21% Similarity=0.228 Sum_probs=54.0
Q ss_pred cCCCEEEEEec----ChhHHHHHHHHhcCC-CEEEEECCCCChhHHHHcCCee-cCHHHHhccCCEEEEccCCCcccccc
Q 006212 227 LVGKTLAVMGF----GKVGSEVARRAKGLG-MNVIAHDPYAPADKARAVGVEL-VSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 227 l~gktvGIIGl----G~IG~~vA~~lk~~G-~~Vi~~d~~~~~~~a~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
++=|+|+|||. |..|..+.+.|+..| .+|+..+|.... =.|... -+++++=...|++++++| .+.+..+
T Consensus 6 f~PksIAVVGaS~~~~~~g~~v~~~L~~~~~g~v~pVnP~~~~----i~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~ 80 (129)
T d2csua1 6 FNPKGIAVIGASNDPKKLGYEVFKNLKEYKKGKVYPVNIKEEE----VQGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDT 80 (129)
T ss_dssp TSCSEEEEETCCSCTTSHHHHHHHHHTTCCSSEEEEECSSCSE----ETTEECBSSTTSCSSCCSEEEECSC-HHHHHHH
T ss_pred CCCCeEEEEccCCCCCCcHHHHHHHHHHcCCCcEEEeccCccc----cCCeEeecchhhcCCCCceEEEecC-hHHhHHH
Confidence 45689999997 889999999999765 799999987421 135544 388888889999999999 4445555
Q ss_pred c
Q 006212 301 F 301 (656)
Q Consensus 301 i 301 (656)
+
T Consensus 81 ~ 81 (129)
T d2csua1 81 L 81 (129)
T ss_dssp H
T ss_pred H
Confidence 5
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.22 E-value=0.16 Score=48.02 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=33.8
Q ss_pred cccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+.|+||++.|-|-+. ||.++|++|...|++|+..|++.
T Consensus 1 ~slkGKvalITGas~GIG~aia~~la~~G~~V~~~~r~~ 39 (248)
T d2o23a1 1 RSVKGLVAVITGGASGLGLATAERLVGQGASAVLLDLPN 39 (248)
T ss_dssp CCCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence 368999999998765 99999999999999999998765
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=90.13 E-value=0.35 Score=44.01 Aligned_cols=84 Identities=17% Similarity=0.295 Sum_probs=54.6
Q ss_pred EEEEEe-cChhHHHHHHHHhcC-CCEEEEE--CCCCChhHH---HH-cC---CeecCHHHHhccCCEEEEccCCCccccc
Q 006212 231 TLAVMG-FGKVGSEVARRAKGL-GMNVIAH--DPYAPADKA---RA-VG---VELVSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~--d~~~~~~~a---~~-~g---~~~~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
+|||+| .|..|+.+.+.|..+ .+++... +.+...... .. .+ +...+.+++..++|++++++|... .
T Consensus 3 kVaIvGATGyvG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~-s-- 79 (176)
T d1vkna1 3 RAGIIGATGYTGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGA-S-- 79 (176)
T ss_dssp EEEEESTTSHHHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTH-H--
T ss_pred EEEEECCCcHHHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHH-H--
Confidence 799998 599999999999876 4566654 222211111 01 11 233477888889999999999543 2
Q ss_pred cccHHHHhcCCCCcEEEEcCCC
Q 006212 300 IFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaRg 321 (656)
.+..... .++.+||.+..
T Consensus 80 ---~~~~~~~-~~~~VIDlSad 97 (176)
T d1vkna1 80 ---YDLVREL-KGVKIIDLGAD 97 (176)
T ss_dssp ---HHHHTTC-CSCEEEESSST
T ss_pred ---HHHHHhh-ccceEEecCcc
Confidence 2333333 58899999843
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=89.86 E-value=0.23 Score=43.93 Aligned_cols=104 Identities=15% Similarity=0.190 Sum_probs=57.0
Q ss_pred CEEEEEec-ChhHHHHHHHHhc---C-CCEEEEECCCCCh----hHHHHcCCeecC-HHHHhccCCEEEEccCCCccccc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKG---L-GMNVIAHDPYAPA----DKARAVGVELVS-FDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~---~-G~~Vi~~d~~~~~----~~a~~~g~~~~~-l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
|+|||||. |.+|+.+.++|.. | -.++..+...... ............ -.+.++.+|++++|+|... ...
T Consensus 2 kkVaIvGATG~VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~ 80 (146)
T d1t4ba1 2 QNVGFIGWRGMVGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNE 80 (146)
T ss_dssp CEEEEESTTSHHHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHH
T ss_pred cEEEEECCccHHHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHH
Confidence 58999997 9999999987653 2 2456555332211 111111111111 1235789999999999432 221
Q ss_pred cccHHHHhcCCCCcEEEEcCC---Cc----h----hcHHHHHHhHhcC
Q 006212 300 IFNDETFAKMKKGVRIVNVAR---GG----V----IDEEALVRALDSG 336 (656)
Q Consensus 300 li~~~~l~~mK~gailINvaR---g~----i----vde~aL~~aL~~g 336 (656)
+ ...+..-+.++++||.+. -. + |+.+.|..++++|
T Consensus 81 ~--~~~~~~~g~~~~VID~Ss~fR~~~dvplviPEVN~~~i~~~~~~g 126 (146)
T d1t4ba1 81 I--YPKLRESGWQGYWIDAASSLRMKDDAIIILDPVNQDVITDGLNNG 126 (146)
T ss_dssp H--HHHHHHTTCCCEEEECSSTTTTCTTEEEECHHHHHHHHHHHHHTT
T ss_pred h--hHHHHhcCCCeecccCCcccccCCCCcEECCCcCHHHHHHHHHcC
Confidence 1 122222334467888873 21 1 3555666677653
|
| >d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Cod (Gadus callarias) [TaxId: 8053]
Probab=89.81 E-value=0.74 Score=40.65 Aligned_cols=45 Identities=33% Similarity=0.474 Sum_probs=38.1
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|.+|.|+|.|.+|...+..++..|. +|++.|+.. ..+.++++|+
T Consensus 28 ~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~~GA 74 (175)
T d1cdoa2 28 PGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGA 74 (175)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTC
T ss_pred CCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHHcCC
Confidence 58899999999999999999997764 799999886 4667777776
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=89.69 E-value=0.17 Score=48.24 Aligned_cols=39 Identities=31% Similarity=0.366 Sum_probs=33.9
Q ss_pred ccccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 224 GVSLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 224 g~~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..+|.||++.|.|.+ -||+++|++|...|++|+..++..
T Consensus 3 ~~~L~gK~alITGas~~~GIG~aiA~~la~~Ga~V~i~~~~~ 44 (256)
T d1ulua_ 3 TVDLSGKKALVMGVTNQRSLGFAIAAKLKEAGAEVALSYQAE 44 (256)
T ss_dssp EECCTTCEEEEESCCCSSSHHHHHHHHHHHTTCEEEEEESSG
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCcH
Confidence 457999999999974 499999999999999998887653
|
| >d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Plasmodium falciparum [TaxId: 5833]
Probab=89.56 E-value=0.19 Score=42.48 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=30.7
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-|++.|||-|.||-++|..+..+|.+|..+++.
T Consensus 22 p~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~ 54 (117)
T d1onfa2 22 SKKIGIVGSGYIAVELINVIKRLGIDSYIFARG 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHTTTCEEEEECSS
T ss_pred CCEEEEECCchHHHHHHHHHHhccccceeeehh
Confidence 479999999999999999999999999998864
|
| >d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Dihydropyrimidine dehydrogenase, domain 2 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.31 E-value=0.099 Score=46.89 Aligned_cols=35 Identities=17% Similarity=0.265 Sum_probs=31.4
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCE-EEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMN-VIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~-Vi~~d~~~ 262 (656)
.+|+|.|||-|..|-..|..|+..|++ |.++++..
T Consensus 3 ~~~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~ 38 (196)
T d1gtea4 3 YSAKIALLGAGPASISCASFLARLGYSDITIFEKQE 38 (196)
T ss_dssp GGCCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSS
T ss_pred CCCEEEEECChHHHHHHHHHHHHCCCCeEEEEEecC
Confidence 589999999999999999999999995 98887654
|
| >d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.30 E-value=0.2 Score=42.60 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=29.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
|++.|||-|.||-++|..+..+|++|..+++.
T Consensus 24 ~~~vIiG~G~ig~E~A~~l~~lG~~Vtii~~~ 55 (122)
T d1v59a2 24 KRLTIIGGGIIGLEMGSVYSRLGSKVTVVEFQ 55 (122)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CeEEEECCCchHHHHHHHHHhhCcceeEEEec
Confidence 78999999999999999999999999988754
|
| >d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Escherichia coli [TaxId: 562]
Probab=89.22 E-value=0.2 Score=42.01 Aligned_cols=33 Identities=27% Similarity=0.501 Sum_probs=30.4
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|++.|||-|.+|-++|..++.+|.+|..+++..
T Consensus 22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~ 54 (116)
T d1gesa2 22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFD 54 (116)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CEEEEECCChhhHHHHHHhhccccEEEEEeecc
Confidence 689999999999999999999999999987653
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=89.12 E-value=0.16 Score=45.43 Aligned_cols=45 Identities=27% Similarity=0.274 Sum_probs=35.1
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGV 272 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~ 272 (656)
.|++|.|.| -|.+|....+.++.+|++|++.+.+. ..+.++++|+
T Consensus 28 ~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~~lGa 74 (179)
T d1qora2 28 PDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSALKAGA 74 (179)
T ss_dssp TTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHTC
T ss_pred CCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHHhcCC
Confidence 488999995 55599999999999999999998775 3445555553
|
| >d1fcda1 c.3.1.5 (A:1-114,A:256-327) Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Flavocytochrome c sulfide dehydrogenase, FCSD, flavin-binding subunit species: Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]
Probab=89.06 E-value=0.17 Score=44.00 Aligned_cols=35 Identities=26% Similarity=0.396 Sum_probs=30.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCC--CEEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLG--MNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G--~~Vi~~d~~~ 262 (656)
.||+|.|||-|.+|-++|..|+.++ .+|..+++..
T Consensus 1 ~gkrivIvGgG~~G~e~A~~l~~~~~~~~Vtlie~~~ 37 (186)
T d1fcda1 1 AGRKVVVVGGGTGGATAAKYIKLADPSIEVTLIEPNT 37 (186)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHHCTTSEEEEECSCS
T ss_pred CCCcEEEECccHHHHHHHHHHHHcCCCCcEEEEECCC
Confidence 4899999999999999999999765 6899988764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.17 Score=48.41 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=34.7
Q ss_pred ccccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 224 GVSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 224 g~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|..|.||++.|-|- +-||+++|++|...|++|+..|++.
T Consensus 1 g~rl~GK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 40 (250)
T d1ydea1 1 GTRYAGKVVVVTGGGRGIGAGIVRAFVNSGARVVICDKDE 40 (250)
T ss_dssp CCTTTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 56789999999986 6799999999999999999998763
|
| >d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.96 E-value=0.18 Score=42.19 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=30.1
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-|++.|||-|.||-++|..+..+|.+|..+.+.
T Consensus 22 p~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~ 54 (117)
T d1ebda2 22 PKSLVVIGGGYIGIELGTAYANFGTKVTILEGA 54 (117)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCeEEEECCCccceeeeeeecccccEEEEEEec
Confidence 479999999999999999999999999988654
|
| >d1mo9a2 c.3.1.5 (A:193-313) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase species: Xanthobacter sp., py2 [TaxId: 35809]
Probab=88.67 E-value=0.25 Score=41.32 Aligned_cols=34 Identities=21% Similarity=0.140 Sum_probs=31.5
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.+|++.|||-|.||-.+|..|+.+|.+|..+.+.
T Consensus 21 ~~~~vvVvGgG~ig~E~A~~l~~~g~~vt~i~~~ 54 (121)
T d1mo9a2 21 PGSTVVVVGGSKTAVEYGCFFNATGRRTVMLVRT 54 (121)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcchhheEeecc
Confidence 5899999999999999999999999999998764
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=88.24 E-value=0.33 Score=42.98 Aligned_cols=87 Identities=15% Similarity=0.090 Sum_probs=48.3
Q ss_pred CEEEEEe-cChhHHHHHHHHhc---C-CCEEEEECCCCChhHHHHcC----Cee-cCHHHHhccCCEEEEccCCCccccc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKG---L-GMNVIAHDPYAPADKARAVG----VEL-VSFDQALATADFISLHMPLNPTTSK 299 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~---~-G~~Vi~~d~~~~~~~a~~~g----~~~-~~l~ell~~aDvV~l~~Plt~~T~~ 299 (656)
.+||||| .|..|+.+.++|.. + ..++..+............+ ... ..-.+.++++|+|++|+|.. .+..
T Consensus 1 mKVaIiGATGyvG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~ 79 (147)
T d1mb4a1 1 MRVGLVGWRGMVGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEK 79 (147)
T ss_dssp CEEEEESCSSHHHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHH
T ss_pred CEEEEECCccHHHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHH
Confidence 4799997 59999999998753 2 35665543221111100111 111 11234578999999999933 2222
Q ss_pred cccHHHHhcCCCCcEEEEcC
Q 006212 300 IFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 300 li~~~~l~~mK~gailINva 319 (656)
+. .. +..-..++++||.+
T Consensus 80 ~~-~~-l~~~g~~~~VIDlS 97 (147)
T d1mb4a1 80 VY-PA-LRQAGWKGYWIDAA 97 (147)
T ss_dssp HH-HH-HHHTTCCSEEEESS
T ss_pred Hh-HH-HHHcCCceEEEeCC
Confidence 22 22 22234446789887
|
| >d2g5ca1 a.100.1.12 (A:201-310) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: TyrA dimerization domain-like domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=88.20 E-value=0.0022 Score=54.91 Aligned_cols=52 Identities=19% Similarity=0.051 Sum_probs=40.5
Q ss_pred HhhcCCCCceEEEEEEeecCCCCCcccccccHHHHHHhhhhhhhccccccchHhH
Q 006212 430 QLVSGGSGIKSVKLIYRSARDPDDLDTRILRAMITKGIIEPISASFINLVNADFT 484 (656)
Q Consensus 430 qL~~g~~~~k~i~i~~~Gs~a~~~~~~~~~~~a~l~GlL~~~~~~~vn~vNA~~i 484 (656)
.+++| +|++.|+++.|++. ||.++...|+..+...|+.+....-.+.++..-
T Consensus 39 ~~agg--gfrD~TRiA~s~p~-mW~dI~~~N~~~i~~~l~~~~~~L~~~~~~l~~ 90 (110)
T d2g5ca1 39 KYPGG--GFKDFTRIAKSDPI-MWRDIFLENKENVMKAIEGFEKSLNHLKELIVR 90 (110)
T ss_dssp GCCTT--TGGGC---CCSCHH-HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHcch--hHHHHHHHHcCCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 46777 99999999999998 999999999999988898887765566555443
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=88.03 E-value=0.18 Score=48.45 Aligned_cols=37 Identities=35% Similarity=0.498 Sum_probs=33.4
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|.||++.|.|-+ -||+++|++|...|++|+..|++.
T Consensus 2 dL~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (254)
T d1hdca_ 2 DLSGKTVIITGGARGLGAEAARQAVAAGARVVLADVLD 39 (254)
T ss_dssp CCCCSEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCcCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6899999999876 599999999999999999998764
|
| >d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Glutathione reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.03 E-value=0.26 Score=41.91 Aligned_cols=32 Identities=19% Similarity=0.160 Sum_probs=30.2
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
|++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 23 k~vvIvGgG~iG~E~A~~l~~~G~~Vtlv~~~ 54 (125)
T d3grsa2 23 GRSVIVGAGYIAVEMAGILSALGSKTSLMIRH 54 (125)
T ss_dssp SEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CEEEEEcCCccHHHHHHHHhcCCcEEEEEeec
Confidence 78999999999999999999999999998765
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=88.00 E-value=0.55 Score=44.38 Aligned_cols=66 Identities=18% Similarity=0.268 Sum_probs=46.9
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCC---hhH------HHHcCCeec--------CHHHHhccCCEEEEcc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP---ADK------ARAVGVELV--------SFDQALATADFISLHM 291 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~---~~~------a~~~g~~~~--------~l~ell~~aDvV~l~~ 291 (656)
++|.|.| .|.||+.+++.|...|++|++.++... ... ....+++.+ .+.+.+..+|.++.+.
T Consensus 4 ~KILVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~ 83 (312)
T d1qyda_ 4 SRVLIVGGTGYIGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISAL 83 (312)
T ss_dssp CCEEEESTTSTTHHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhh
Confidence 5699999 699999999999999999999887542 111 122344332 2456788888888887
Q ss_pred CCCc
Q 006212 292 PLNP 295 (656)
Q Consensus 292 Plt~ 295 (656)
+...
T Consensus 84 ~~~~ 87 (312)
T d1qyda_ 84 AGGV 87 (312)
T ss_dssp CCSS
T ss_pred hhcc
Confidence 7443
|
| >d1vl6a1 c.2.1.7 (A:155-376) Malate oxidoreductase (malic enzyme) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Malate oxidoreductase (malic enzyme) species: Thermotoga maritima [TaxId: 2336]
Probab=87.87 E-value=1.3 Score=41.68 Aligned_cols=110 Identities=23% Similarity=0.212 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHHccccccccccccccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC--Chh-
Q 006212 190 AAEHGIALLASMARNVSQADASIKAGKWLRSKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA--PAD- 265 (656)
Q Consensus 190 vAE~~lal~L~~~R~i~~~~~~~~~g~W~~~~~~g~~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~--~~~- 265 (656)
+|=-+++-+|+.+| ..|..|...++.|+|.|.-|-.+|+.+...+. +++.+|+.- ..+
T Consensus 5 TaaV~LAgll~a~~------------------~~g~~l~d~riv~~GAGsAg~gia~~l~~~~~~~i~~~D~~GLi~~~r 66 (222)
T d1vl6a1 5 TAVVVSAAFLNALK------------------LTEKKIEEVKVVVNGIGAAGYNIVKFLLDLGVKNVVAVDRKGILNEND 66 (222)
T ss_dssp HHHHHHHHHHHHHH------------------HHTCCTTTCEEEEECCSHHHHHHHHHHHHHTCCEEEEEETTEECCTTS
T ss_pred HHHHHHHHHHHHHH------------------HhCCChhhcEEEEEChHHHHHHHHHHHHHhcccceEeecceeEEEcCc
Confidence 34456666777665 34678999999999999999999999987765 688888651 100
Q ss_pred -----------HHHHcCC--eecCHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEEEcCCCc
Q 006212 266 -----------KARAVGV--ELVSFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 266 -----------~a~~~g~--~~~~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINvaRg~ 322 (656)
.+..... ...++.+.+..+|++...- +.+++.++.+..|.+..+|.=.+.-.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~g~~~~~g~~-----~~~~~~~e~m~~~~~rPIIFpLSNPt 131 (222)
T d1vl6a1 67 PETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVS-----RGNILKPEWIKKMSRKPVIFALANPV 131 (222)
T ss_dssp GGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECS-----CSSCSCHHHHTTSCSSCEEEECCSSS
T ss_pred ccccccHHHHHHHhhhcchhhhcchHhhccCcceecccc-----ccccccHHHHhhcCCCCEEEecCCCc
Confidence 0111111 1237889999999876643 57788889999999999999998643
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=87.83 E-value=0.2 Score=45.19 Aligned_cols=87 Identities=23% Similarity=0.247 Sum_probs=58.6
Q ss_pred CCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeec------C-HHHHh-----ccCCEEEEccCC
Q 006212 228 VGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELV------S-FDQAL-----ATADFISLHMPL 293 (656)
Q Consensus 228 ~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~------~-l~ell-----~~aDvV~l~~Pl 293 (656)
.|++|.|.|. |.+|...++.++..|++|++.+... ..+.+++.|...+ + .++++ ...|+|+-|+.
T Consensus 29 ~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~~~~~Ga~~vi~~~~~~~~~~~~~~~~~~Gvd~v~D~vG- 107 (182)
T d1v3va2 29 GGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYLKQIGFDAAFNYKTVNSLEEALKKASPDGYDCYFDNVG- 107 (182)
T ss_dssp SSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCSEEEETTSCSCHHHHHHHHCTTCEEEEEESSC-
T ss_pred CCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHHHHhhhhhhhcccccccHHHHHHHHhhcCCCceeEEecC-
Confidence 4889999888 6799999999999999999987654 4556677776321 1 22222 23677777664
Q ss_pred CccccccccHHHHhcCCCCcEEEEcCC
Q 006212 294 NPTTSKIFNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 294 t~~T~~li~~~~l~~mK~gailINvaR 320 (656)
.+ .-...+..|+++..++.++.
T Consensus 108 -~~----~~~~~~~~l~~~G~~v~~G~ 129 (182)
T d1v3va2 108 -GE----FLNTVLSQMKDFGKIAICGA 129 (182)
T ss_dssp -HH----HHHHHGGGEEEEEEEEECCC
T ss_pred -ch----hhhhhhhhccCCCeEEeecc
Confidence 11 12345666777777777763
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.60 E-value=0.29 Score=46.94 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=35.5
Q ss_pred ccccccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 222 YVGVSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 222 ~~g~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|...-|+||++.|.|-+. ||+++|+.|...|++|+..+++.
T Consensus 7 f~~~~L~GK~alITGassGIG~aiA~~la~~G~~Vil~~r~~ 48 (269)
T d1xu9a_ 7 FRPEMLQGKKVIVTGASKGIGREMAYHLAKMGAHVVVTARSK 48 (269)
T ss_dssp CCGGGGTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCccccCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 334459999999998876 99999999999999999999874
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=87.48 E-value=0.28 Score=44.31 Aligned_cols=63 Identities=17% Similarity=0.130 Sum_probs=40.7
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCC--EEEEECCCCChhHHHHcCCee--------cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGM--NVIAHDPYAPADKARAVGVEL--------VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~--~Vi~~d~~~~~~~a~~~g~~~--------~~l~ell~~aDvV~l~~P 292 (656)
+||.|.| .|.||+.++++|...|. .|+...+..........+++. .++.++++.+|.|+.+..
T Consensus 4 ~tVlVtGatG~iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 4 PTVLVTGASGRTGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGGEADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp CEEEEESTTSTTHHHHHHHHHHTTTTCEEEEEESCHHHHHHTTCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred CEEEEECCccHHHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccCCcEEEEeeeccccccccccccceeeEEEEe
Confidence 5899998 79999999999998775 455555543211111123321 134567788898876654
|
| >d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH peroxidase species: Enterococcus faecalis [TaxId: 1351]
Probab=87.36 E-value=0.29 Score=41.48 Aligned_cols=35 Identities=26% Similarity=0.264 Sum_probs=31.6
Q ss_pred cCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 227 LVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 227 l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
-.+|++.|||-|.+|-.+|..+..+|.+|..+++.
T Consensus 28 ~~~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~ 62 (123)
T d1nhpa2 28 PEVNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDIL 62 (123)
T ss_dssp TTCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred cCCCEEEEECChHHHHHHHHHhhccceEEEEEEec
Confidence 35789999999999999999999999999998654
|
| >d1d7ya2 c.3.1.5 (A:116-236) NADH-dependent ferredoxin reductase, BphA4 {Pseudomonas sp., KKS102 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH-dependent ferredoxin reductase, BphA4 species: Pseudomonas sp., KKS102 [TaxId: 306]
Probab=87.31 E-value=0.29 Score=41.46 Aligned_cols=34 Identities=26% Similarity=0.387 Sum_probs=31.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|++.|||-|.+|-++|..|+..|.+|..+++..
T Consensus 30 ~~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~ 63 (121)
T d1d7ya2 30 QSRLLIVGGGVIGLELAATARTAGVHVSLVETQP 63 (121)
T ss_dssp TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCeEEEECcchhHHHHHHHhhcccceEEEEeecc
Confidence 6899999999999999999999999999987653
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=87.24 E-value=0.2 Score=48.03 Aligned_cols=38 Identities=32% Similarity=0.392 Sum_probs=34.2
Q ss_pred cccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.++.||++.|-|-+. ||+++|++|...|++|+..|+..
T Consensus 5 m~l~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 43 (260)
T d1h5qa_ 5 ISFVNKTIIVTGGNRGIGLAFTRAVAAAGANVAVIYRSA 43 (260)
T ss_dssp ECCTTEEEEEETTTSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred ccCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 468999999998765 99999999999999999998875
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=87.17 E-value=0.27 Score=47.10 Aligned_cols=37 Identities=24% Similarity=0.281 Sum_probs=33.2
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 5 ~L~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 42 (259)
T d2ae2a_ 5 NLEGCTALVTGGSRGIGYGIVEELASLGASVYTCSRNQ 42 (259)
T ss_dssp CCTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6899999999886 499999999999999999998763
|
| >d1xgka_ c.2.1.2 (A:) Negative transcriptional regulator NmrA {Aspergillus nidulans [TaxId: 162425]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Negative transcriptional regulator NmrA species: Aspergillus nidulans [TaxId: 162425]
Probab=87.15 E-value=0.48 Score=46.53 Aligned_cols=67 Identities=25% Similarity=0.291 Sum_probs=47.9
Q ss_pred CCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCChhHH----HHcCCeec-----C----HHHHhccCCEEEEccCCC
Q 006212 229 GKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAPADKA----RAVGVELV-----S----FDQALATADFISLHMPLN 294 (656)
Q Consensus 229 gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a----~~~g~~~~-----~----l~ell~~aDvV~l~~Plt 294 (656)
.|||.|+| .|.||+.+++.|.+.|++|.+..+......+ ...|++.+ + ++.++..+|.+++..+..
T Consensus 3 kktIlVtGatG~iG~~lv~~Ll~~G~~V~~l~R~~~~~~~~~~~~~~~v~~~~gD~~d~~~~~~~a~~~~~~~~~~~~~~ 82 (350)
T d1xgka_ 3 KKTIAVVGATGRQGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTSQ 82 (350)
T ss_dssp CCCEEEESTTSHHHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCST
T ss_pred CCEEEEECCChHHHHHHHHHHHhCCCeEEEEECCcchhhhhhhcccCCCEEEEeeCCCcHHHHHHHhcCCceEEeecccc
Confidence 58999998 6999999999999999999888655422211 11244332 2 456788999998877744
Q ss_pred c
Q 006212 295 P 295 (656)
Q Consensus 295 ~ 295 (656)
.
T Consensus 83 ~ 83 (350)
T d1xgka_ 83 A 83 (350)
T ss_dssp T
T ss_pred c
Confidence 3
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=87.05 E-value=0.61 Score=44.94 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=40.6
Q ss_pred HHHcccccccc---ccccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 211 SIKAGKWLRSK---YVGVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 211 ~~~~g~W~~~~---~~g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.+++.-|.... ....+|.||++.|-| -|.||+++|+.|...|++|++.|++.
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~gK~alITGas~GIG~aiA~~la~~Ga~Vii~~r~~ 59 (294)
T d1w6ua_ 4 ALQSKFFSPLQKAMLPPNSFQGKVAFITGGGTGLGKGMTTLLSSLGAQCVIASRKM 59 (294)
T ss_dssp HHHHHHSCCCCSCCSCTTTTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred hhhhhhcCcccccCCCCCCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 34455565321 223589999999997 68899999999999999999998864
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=87.00 E-value=0.26 Score=46.81 Aligned_cols=37 Identities=24% Similarity=0.346 Sum_probs=32.4
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|.||++-|-|-+ .||+++|++|...|++|+..|++.
T Consensus 1 dl~gK~alITGas~GIG~a~a~~l~~~G~~Vv~~~r~~ 38 (243)
T d1q7ba_ 1 NFEGKIALVTGASRGIGRAIAETLAARGAKVIGTATSE 38 (243)
T ss_dssp CCTTCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCH
Confidence 4789999998854 599999999999999999999763
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.96 E-value=0.45 Score=45.43 Aligned_cols=37 Identities=22% Similarity=0.278 Sum_probs=33.1
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|+||++.|.|-+ .||.++|++|...|++|++.+++.
T Consensus 7 ~lk~Kv~lITGas~GIG~aiA~~la~~G~~Vv~~~r~~ 44 (257)
T d1xg5a_ 7 RWRDRLALVTGASGGIGAAVARALVQQGLKVVGCARTV 44 (257)
T ss_dssp GGTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899999999865 699999999999999999998763
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.95 E-value=0.47 Score=44.89 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=33.6
Q ss_pred cccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..|.||++.|.|-+ .||+++|++|...|++|+..|++.
T Consensus 3 ~~L~GK~~lITGas~GIG~aia~~la~~G~~V~~~~r~~ 41 (244)
T d1pr9a_ 3 LFLAGRRVLVTGAGKGIGRGTVQALHATGARVVAVSRTQ 41 (244)
T ss_dssp CCCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 35899999999865 599999999999999999999863
|
| >d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Ferredoxin-like superfamily: ACT-like family: Phenylalanine metabolism regulatory domain domain: Phenylalanine hydroxylase N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.92 E-value=0.41 Score=39.32 Aligned_cols=55 Identities=11% Similarity=0.195 Sum_probs=40.7
Q ss_pred ccEEEEEecCCCCchhhHHhhhhcCCccccceEeeeec-cCccEEEEEEeCCCCCH
Q 006212 558 GNLILCRQVDQPGMIGKVGNILGEHNVNVNFMSVGRTF-RRNHGIMAIGVDEEPNQ 612 (656)
Q Consensus 558 ~~~Llv~~~D~PGvIa~V~~iL~~~~INI~~m~v~r~~-~gg~al~~i~~D~~~~~ 612 (656)
.-.|++...|+||.+..+...+++++||+..++--..+ ..++-.-.|+++...++
T Consensus 16 ktSl~f~~~~~pGaL~~vL~~f~~~~INLt~IeSRP~~~~~~~Y~F~id~eg~~~~ 71 (97)
T d1phza1 16 AISLIFSLKEEVGALAKVLRLFEENDINLTHIESRPSRLNKDEYEFFTYLDKRTKP 71 (97)
T ss_dssp CEEEEEEEECCTTHHHHHHHHHHTTTCCTTSEEEEECSSCTTEEEEEECBCGGGHH
T ss_pred cEEEEEEeCCCCCHHHHHHHHHHHCCCCEEEEEeeccCCCCceEEEEEEcccCChH
Confidence 34567778899999999999999999999999874322 23344556777765444
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=86.86 E-value=0.2 Score=47.97 Aligned_cols=37 Identities=22% Similarity=0.267 Sum_probs=33.3
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 2 ~l~gK~~lITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (251)
T d1vl8a_ 2 DLRGRVALVTGGSRGLGFGIAQGLAEAGCSVVVASRNL 39 (251)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 6899999999875 499999999999999999998764
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=86.79 E-value=0.3 Score=46.16 Aligned_cols=36 Identities=19% Similarity=0.263 Sum_probs=32.2
Q ss_pred cCCCEEEEEecCh---hHHHHHHHHhcCCCEEEEECCCC
Q 006212 227 LVGKTLAVMGFGK---VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 227 l~gktvGIIGlG~---IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|.||++.|.|-+. ||+++|+.|...|++|+..+++.
T Consensus 3 L~gK~~lITGass~~GIG~aiA~~l~~~G~~V~i~~~~~ 41 (258)
T d1qsga_ 3 LSGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQND 41 (258)
T ss_dssp TTTCEEEECCCCSTTSHHHHHHHHHHHTTCEEEEEESST
T ss_pred CCCCEEEEECCCCchhHHHHHHHHHHHcCCEEEEEeCCH
Confidence 7899999999764 99999999999999999888764
|
| >d5mdha1 c.2.1.5 (A:1-154) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=86.79 E-value=0.37 Score=42.57 Aligned_cols=62 Identities=13% Similarity=0.038 Sum_probs=43.2
Q ss_pred EEEEEe-cChhHHHHHHHHhcCC-------CEEEEECCCCChhHHHHc-------CC------e-ecCHHHHhccCCEEE
Q 006212 231 TLAVMG-FGKVGSEVARRAKGLG-------MNVIAHDPYAPADKARAV-------GV------E-LVSFDQALATADFIS 288 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk~~G-------~~Vi~~d~~~~~~~a~~~-------g~------~-~~~l~ell~~aDvV~ 288 (656)
+|.||| .|.+|+.+|..|...+ ..+..||.......+..+ .. . ..+..+.+++||+|+
T Consensus 5 KV~IiGA~G~VG~~la~~l~~~~~~~~~~~~~L~l~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvVV 84 (154)
T d5mdha1 5 RVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEEIAFKDLDVAI 84 (154)
T ss_dssp EEEESSTTSHHHHTTHHHHHTTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHHTCCTTEEEEEEESCHHHHTTTCSEEE
T ss_pred EEEEECCCCHHHHHHHHHHHHHHhcCCCCccEEEEecCccchhhhhhhhhhhcccccccccccccCcccccccCCceEEE
Confidence 799999 5999999999887433 257778866533322221 11 1 126789999999999
Q ss_pred EccC
Q 006212 289 LHMP 292 (656)
Q Consensus 289 l~~P 292 (656)
++.-
T Consensus 85 itag 88 (154)
T d5mdha1 85 LVGS 88 (154)
T ss_dssp ECCS
T ss_pred Eecc
Confidence 9874
|
| >d2dt5a2 c.2.1.12 (A:78-203) Transcriptional repressor Rex, C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Transcriptional repressor Rex, C-terminal domain domain: Transcriptional repressor Rex, C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=86.50 E-value=0.16 Score=43.58 Aligned_cols=62 Identities=19% Similarity=0.295 Sum_probs=39.2
Q ss_pred EEEEEecChhHHHHHHHHh-cCCCEEEEE-CCCCChhHHHHcCCeec---CHHHHhc-cCCEEEEccC
Q 006212 231 TLAVMGFGKVGSEVARRAK-GLGMNVIAH-DPYAPADKARAVGVELV---SFDQALA-TADFISLHMP 292 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk-~~G~~Vi~~-d~~~~~~~a~~~g~~~~---~l~ell~-~aDvV~l~~P 292 (656)
++.|+|.|.+|+.+++.+. .-|++++++ |......-..=.|+... .++++.+ ..++.++++|
T Consensus 5 ~v~I~GaG~~G~~l~~~l~~~~~~~iv~fiDdd~~k~G~~I~Gi~V~~~~~l~~~~~~~i~iai~~i~ 72 (126)
T d2dt5a2 5 GLCIVGMGRLGSALADYPGFGESFELRGFFDVDPEKVGRPVRGGVIEHVDLLPQRVPGRIEIALLTVP 72 (126)
T ss_dssp EEEEECCSHHHHHHHHCSCCCSSEEEEEEEESCTTTTTCEETTEEEEEGGGHHHHSTTTCCEEEECSC
T ss_pred eEEEEcCCHHHHHHHHhHhhcCCcEEEEEEeCchHhcCCEECCEEEecHHHHHHHHhhcccEEEEeCC
Confidence 7999999999999998775 458999886 54332111111244433 3444443 4677777777
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=86.47 E-value=0.58 Score=44.66 Aligned_cols=37 Identities=19% Similarity=0.268 Sum_probs=32.7
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 1 rl~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 38 (258)
T d1iy8a_ 1 RFTDRVVLITGGGSGLGRATAVRLAAEGAKLSLVDVSS 38 (258)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3789999999876 599999999999999999998864
|
| >d2gz1a1 c.2.1.3 (A:2-127,A:330-357) Aspartate beta-semialdehyde dehydrogenase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=86.46 E-value=0.13 Score=45.73 Aligned_cols=86 Identities=19% Similarity=0.191 Sum_probs=52.1
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCC---EEEEECCCCChhHHHHcCC----eecCHHHHhccCCEEEEccCCCcccccc
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGM---NVIAHDPYAPADKARAVGV----ELVSFDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~---~Vi~~d~~~~~~~a~~~g~----~~~~l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
|=+|||||. |..|+++.+.|..+.+ ++..+.............. .....++.+.++|++++++|... +.
T Consensus 1 g~kVaIvGATGyvG~eLirlL~~H~fp~~~l~~~~s~~s~G~~~~~~~~~~~~~~~~~~~~~~~d~~f~~~~~~~-s~-- 77 (154)
T d2gz1a1 1 GYTVAVVGATGAVGAQMIKMLEESTLPIDKIRYLASARSAGKSLKFKDQDITIEETTETAFEGVDIALFSAGSST-SA-- 77 (154)
T ss_dssp CEEEEEETTTSHHHHHHHHHHHTCCSCEEEEEEEECGGGTTCEEEETTEEEEEEECCTTTTTTCSEEEECSCHHH-HH--
T ss_pred CCEEEEECCCcHHHHHHHHHHHcCCCCceEEEEecccccccccccccCCcccccccchhhhhhhhhhhhccCccc-hh--
Confidence 458999998 9999999999987643 4444322111000000011 11234566789999999999332 22
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006212 301 FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 301 i~~~~l~~mK~gailINva 319 (656)
+......++|+.+||.+
T Consensus 78 --~~~~~~~~~~~~VIDlS 94 (154)
T d2gz1a1 78 --KYAPYAVKAGVVVVDNT 94 (154)
T ss_dssp --HHHHHHHHTTCEEEECS
T ss_pred --hHHhhhccccceehhcC
Confidence 22223357899999987
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=86.40 E-value=0.33 Score=44.22 Aligned_cols=38 Identities=32% Similarity=0.357 Sum_probs=34.3
Q ss_pred cccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
....+|+|.|||-|..|-+.|..|...|++|..|+...
T Consensus 39 ~~~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 39 PAVQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SCSSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 34678999999999999999999999999999998753
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=86.14 E-value=0.23 Score=47.11 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=33.2
Q ss_pred ccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|.|-+. ||+++|+.|...|++|+..+++.
T Consensus 2 ~l~gK~alItGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (241)
T d2a4ka1 2 RLSGKTILVTGAASGIGRAALDLFAREGASLVAVDREE 39 (241)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 37899999998876 99999999999999999998764
|
| >d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.12 E-value=0.23 Score=42.10 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=30.4
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.+++.|||.|.||-++|..+..+|++|....+.
T Consensus 25 p~~~viiG~G~iglE~A~~~~~~G~~Vtvi~~~ 57 (123)
T d1dxla2 25 PKKLVVIGAGYIGLEMGSVWGRIGSEVTVVEFA 57 (123)
T ss_dssp CSEEEESCCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEEccchHHHHHHHHHHhcCCeEEEEEEc
Confidence 479999999999999999999999999998654
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=86.11 E-value=0.23 Score=47.64 Aligned_cols=38 Identities=26% Similarity=0.315 Sum_probs=33.8
Q ss_pred cccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..|+||++.|-|-+. ||+++|++|...|++|+..|++.
T Consensus 4 F~LkgK~alVTGas~GIG~aiA~~la~~Ga~V~~~~r~~ 42 (259)
T d1xq1a_ 4 WSLKAKTVLVTGGTKGIGHAIVEEFAGFGAVIHTCARNE 42 (259)
T ss_dssp TCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 468999999998765 99999999999999999999764
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.10 E-value=0.53 Score=44.53 Aligned_cols=37 Identities=22% Similarity=0.354 Sum_probs=33.0
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+|.||++.|.|-+ -||+++|++|...|++|+..|++.
T Consensus 2 dl~GK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (242)
T d1cyda_ 2 NFSGLRALVTGAGKGIGRDTVKALHASGAKVVAVTRTN 39 (242)
T ss_dssp CCTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5889999999875 599999999999999999998763
|
| >d1diha1 c.2.1.3 (A:2-130,A:241-273) Dihydrodipicolinate reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Escherichia coli [TaxId: 562]
Probab=86.10 E-value=0.11 Score=46.78 Aligned_cols=63 Identities=19% Similarity=0.221 Sum_probs=39.8
Q ss_pred CEEEEEec-ChhHHHHHHHHhc-CCCEEEE-ECCCCChhHH---------HHcCCee-cCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMGF-GKVGSEVARRAKG-LGMNVIA-HDPYAPADKA---------RAVGVEL-VSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~-~G~~Vi~-~d~~~~~~~a---------~~~g~~~-~~l~ell~~aDvV~l~~P 292 (656)
-+|+|+|+ |+||+.+++.+.. -++++.+ +|+......- ...++.. .++++++..+|+|+=-..
T Consensus 5 ikI~i~Ga~GrMG~~i~~~i~~~~~~~lv~~~~~~~~~~~g~d~~~~~~~~~~~~~~~~~~~~~~~~~DViIDFs~ 80 (162)
T d1diha1 5 IRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR 80 (162)
T ss_dssp EEEEETTTTSHHHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecccchhccchhhhhhccccCCceeeccHHHHhcccceEEEecc
Confidence 37999995 9999999999875 4788765 5654221110 1112222 256777778887765543
|
| >d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Azotobacter vinelandii [TaxId: 354]
Probab=85.95 E-value=0.33 Score=40.82 Aligned_cols=32 Identities=28% Similarity=0.398 Sum_probs=29.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDP 260 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~ 260 (656)
.+++.|||-|.||-.+|..++.+|.+|..+.+
T Consensus 22 p~~i~IiG~G~ig~E~A~~l~~~G~~Vtiv~~ 53 (119)
T d3lada2 22 PGKLGVIGAGVIGLELGSVWARLGAEVTVLEA 53 (119)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECCChHHHHHHHHHHHcCCceEEEEe
Confidence 48899999999999999999999999988754
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=85.78 E-value=0.98 Score=42.17 Aligned_cols=44 Identities=18% Similarity=0.184 Sum_probs=35.8
Q ss_pred cCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCC
Q 006212 227 LVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGV 272 (656)
Q Consensus 227 l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~ 272 (656)
|+||++.|.|- +-||+++|+.|...|++|+..|++ .+..++.+.
T Consensus 2 LkgK~~lVTGas~GIG~aia~~l~~~Ga~V~~~~r~--~~~l~~~~~ 46 (234)
T d1o5ia_ 2 IRDKGVLVLAASRGIGRAVADVLSQEGAEVTICARN--EELLKRSGH 46 (234)
T ss_dssp CTTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESC--HHHHHHTCS
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECC--HHHHHhcCC
Confidence 78999999987 459999999999999999999876 334444444
|
| >d1h6va2 c.3.1.5 (A:171-292) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Mammalian thioredoxin reductase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.69 E-value=0.24 Score=42.08 Aligned_cols=32 Identities=25% Similarity=0.241 Sum_probs=28.8
Q ss_pred CEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 230 KTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 230 ktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
+++.|||-|.||-++|..++.+|.+|..+.+.
T Consensus 21 ~~vvIIGgG~iG~E~A~~l~~lG~~Vtii~~~ 52 (122)
T d1h6va2 21 GKTLVVGASYVALECAGFLAGIGLDVTVMVRS 52 (122)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEECCCccHHHHHHHHhhcCCeEEEEEec
Confidence 68999999999999999999999998887543
|
| >d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.59 E-value=0.72 Score=40.02 Aligned_cols=32 Identities=28% Similarity=0.407 Sum_probs=25.5
Q ss_pred EEEEEe-cChhHHHHHHHHh-cCCCEEEE-ECCCC
Q 006212 231 TLAVMG-FGKVGSEVARRAK-GLGMNVIA-HDPYA 262 (656)
Q Consensus 231 tvGIIG-lG~IG~~vA~~lk-~~G~~Vi~-~d~~~ 262 (656)
+|+|+| .|+||+.+++.+. .-++++.+ +|+..
T Consensus 1 kI~v~Ga~GrMG~~i~~~i~~~~~~~l~~~~d~~~ 35 (135)
T d1yl7a1 1 RVGVLGAKGKVGATMVRAVAAADDLTLSAELDAGD 35 (135)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTSEEEEEECTTC
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 689999 6999999999876 45788765 67643
|
| >d1xhca2 c.3.1.5 (A:104-225) NADH oxidase /nitrite reductase {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: NADH oxidase /nitrite reductase species: Pyrococcus furiosus [TaxId: 2261]
Probab=85.49 E-value=0.47 Score=39.95 Aligned_cols=34 Identities=24% Similarity=0.218 Sum_probs=31.0
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
++++.|||-|.+|-++|..|..+|.+|..+++..
T Consensus 32 ~~~vvIiGgG~iG~E~A~~l~~~g~~Vtlv~~~~ 65 (122)
T d1xhca2 32 SGEAIIIGGGFIGLELAGNLAEAGYHVKLIHRGA 65 (122)
T ss_dssp HSEEEEEECSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCcEEEECCcHHHHHHHHHhhcccceEEEEeccc
Confidence 4789999999999999999999999999998653
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=85.39 E-value=0.33 Score=44.57 Aligned_cols=34 Identities=24% Similarity=0.191 Sum_probs=31.2
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
-|+|.|||-|..|-+.|..|...|.+|.++|+..
T Consensus 6 ~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~ 39 (268)
T d1c0pa1 6 QKRVVVLGSGVIGLSSALILARKGYSVHILARDL 39 (268)
T ss_dssp SCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CCcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 4689999999999999999999999999999753
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=85.38 E-value=0.3 Score=46.79 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.0
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|-+ -||+++|+.|...|++|+..|++.
T Consensus 2 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (260)
T d1zema1 2 KFNGKVCLVTGAGGNIGLATALRLAEEGTAIALLDMNR 39 (260)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5789999999875 499999999999999999999763
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.26 E-value=0.34 Score=46.10 Aligned_cols=37 Identities=27% Similarity=0.279 Sum_probs=32.8
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|- +-||+++|++|...|++|++.|++.
T Consensus 3 ~L~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~ 40 (244)
T d1nffa_ 3 RLTGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILD 40 (244)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 488999999987 4599999999999999999998763
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=85.20 E-value=0.55 Score=44.51 Aligned_cols=38 Identities=21% Similarity=0.250 Sum_probs=33.3
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYAP 263 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~~ 263 (656)
.|.||++.|-|-+ -||+++|+.|...|++|+..|+...
T Consensus 2 rL~gKvalVTGas~GIG~aia~~la~~Ga~V~~~~~~~~ 40 (247)
T d2ew8a1 2 RLKDKLAVITGGANGIGRAIAERFAVEGADIAIADLVPA 40 (247)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSCC
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCch
Confidence 4889999999875 5999999999999999999987653
|
| >d1db3a_ c.2.1.2 (A:) GDP-mannose 4,6-dehydratase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: GDP-mannose 4,6-dehydratase species: Escherichia coli [TaxId: 562]
Probab=85.20 E-value=0.49 Score=46.88 Aligned_cols=33 Identities=27% Similarity=0.216 Sum_probs=28.0
Q ss_pred CEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
|.+.|.| .|-||+.+++.|...|++|++.|+..
T Consensus 2 K~vLITGatGfiGs~lv~~Ll~~g~~V~~~~r~~ 35 (357)
T d1db3a_ 2 KVALITGVTGQDGSYLAEFLLEKGYEVHGIKRRA 35 (357)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEECC--
T ss_pred CEEEEeCCCcHHHHHHHHHHHHCcCEEEEEECCC
Confidence 5666777 89999999999999999999999753
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=85.12 E-value=0.29 Score=46.26 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=31.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..|+|.|||-|..|-+.|..|+..|++|.+++...
T Consensus 29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 45799999999999999999999999999998653
|
| >d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Neisseria meningitidis [TaxId: 487]
Probab=84.88 E-value=0.38 Score=41.03 Aligned_cols=33 Identities=21% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.+++.|||-|.||-++|..++.+|.+|....+.
T Consensus 26 p~~vvIiGgG~IG~E~A~~~~~~G~~Vtive~~ 58 (125)
T d1ojta2 26 PGKLLIIGGGIIGLEMGTVYSTLGSRLDVVEMM 58 (125)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHhhcCCCEEEEEEee
Confidence 479999999999999999999999999998754
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=84.84 E-value=0.26 Score=43.32 Aligned_cols=85 Identities=8% Similarity=0.115 Sum_probs=49.5
Q ss_pred CEEEEEec-ChhHHHHHHHHh--cC-CCEEEEE-CCCCChhHHHHcCC---eecC-HHHHhccCCEEEEccCCCcccccc
Q 006212 230 KTLAVMGF-GKVGSEVARRAK--GL-GMNVIAH-DPYAPADKARAVGV---ELVS-FDQALATADFISLHMPLNPTTSKI 300 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk--~~-G~~Vi~~-d~~~~~~~a~~~g~---~~~~-l~ell~~aDvV~l~~Plt~~T~~l 300 (656)
.+|||||. |..|+.+.+.|. .+ ..++... .+...-+.. .... ...+ -.+.+.++|++++++|... ...+
T Consensus 3 mnVaIvGATGyvG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i-~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~~-s~~~ 80 (144)
T d2hjsa1 3 LNVAVVGATGSVGEALVGLLDERDFPLHRLHLLASAESAGQRM-GFAESSLRVGDVDSFDFSSVGLAFFAAAAEV-SRAH 80 (144)
T ss_dssp CCEEEETTTSHHHHHHHHHHHHTTCCCSCEEEEECTTTTTCEE-EETTEEEECEEGGGCCGGGCSEEEECSCHHH-HHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCCceEEEEEeecccCCcce-eeccccchhccchhhhhccceEEEecCCcch-hhhh
Confidence 47999987 999999999996 33 3455543 222111100 0111 1112 2345789999999999332 2211
Q ss_pred ccHHHHhcCCCCcEEEEcCC
Q 006212 301 FNDETFAKMKKGVRIVNVAR 320 (656)
Q Consensus 301 i~~~~l~~mK~gailINvaR 320 (656)
. . ...+.|+++||.+.
T Consensus 81 ~-~---~~~~~g~~VID~Ss 96 (144)
T d2hjsa1 81 A-E---RARAAGCSVIDLSG 96 (144)
T ss_dssp H-H---HHHHTTCEEEETTC
T ss_pred c-c---ccccCCceEEeech
Confidence 1 1 12468999999873
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=84.81 E-value=0.38 Score=45.59 Aligned_cols=37 Identities=19% Similarity=0.221 Sum_probs=32.9
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|-+ .||+++|+.|...|++|+..|++.
T Consensus 2 ~L~gK~~lITGas~GIG~aia~~l~~~G~~V~~~~r~~ 39 (242)
T d1ulsa_ 2 RLKDKAVLITGAAHGIGRATLELFAKEGARLVACDIEE 39 (242)
T ss_dssp TTTTCEEEEESTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4789999999865 599999999999999999999863
|
| >d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Putidaredoxin reductase species: Pseudomonas putida [TaxId: 303]
Probab=84.73 E-value=0.55 Score=40.26 Aligned_cols=35 Identities=37% Similarity=0.396 Sum_probs=31.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.+|++.|||-|.+|-++|..++..|.+|..+++..
T Consensus 34 ~~k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~ 68 (133)
T d1q1ra2 34 ADNRLVVIGGGYIGLEVAATAIKANMHVTLLDTAA 68 (133)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred cCCEEEEECCchHHHHHHHHHHhhCcceeeeeecc
Confidence 36899999999999999999999999999998653
|
| >d1jw9b_ c.111.1.1 (B:) Molybdenum cofactor biosynthesis protein MoeB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Activating enzymes of the ubiquitin-like proteins superfamily: Activating enzymes of the ubiquitin-like proteins family: Molybdenum cofactor biosynthesis protein MoeB domain: Molybdenum cofactor biosynthesis protein MoeB species: Escherichia coli [TaxId: 562]
Probab=84.53 E-value=0.23 Score=47.00 Aligned_cols=37 Identities=19% Similarity=0.349 Sum_probs=33.0
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCC-EEEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGM-NVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~-~Vi~~d~~~ 262 (656)
.|++++|.|||+|.+|..+|..|...|. ++..+|+..
T Consensus 27 kL~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ 64 (247)
T d1jw9b_ 27 ALKDSRVLIVGLGGLGCAASQYLASAGVGNLTLLDFDT 64 (247)
T ss_dssp HHHHCEEEEECCSHHHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHhCCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCcc
Confidence 4899999999999999999999999997 788888653
|
| >d1vm6a3 c.2.1.3 (A:1-96,A:183-214) Dihydrodipicolinate reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Dihydrodipicolinate reductase species: Thermotoga maritima [TaxId: 2336]
Probab=84.21 E-value=0.42 Score=41.15 Aligned_cols=28 Identities=18% Similarity=0.540 Sum_probs=24.8
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEE
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIA 257 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~ 257 (656)
.+|||+|+ |+||+.+++.+...|+++.+
T Consensus 1 mki~i~G~~GrMG~~i~~~~~~~~~~l~~ 29 (128)
T d1vm6a3 1 MKYGIVGYSGRMGQEIQKVFSEKGHELVL 29 (128)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEECCCCHHHHHHHHHHhcCCCeEEE
Confidence 37999996 99999999999988988775
|
| >d2cvoa1 c.2.1.3 (A:68-218,A:384-415) Putative semialdehyde dehydrogenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative semialdehyde dehydrogenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=84.12 E-value=0.85 Score=41.26 Aligned_cols=87 Identities=15% Similarity=0.221 Sum_probs=52.0
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE-CCCC-C--hhHHHH-c-CCe----ecCHHHHhccCCEEEEccCCCccc
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH-DPYA-P--ADKARA-V-GVE----LVSFDQALATADFISLHMPLNPTT 297 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~-d~~~-~--~~~a~~-~-g~~----~~~l~ell~~aDvV~l~~Plt~~T 297 (656)
.+||||| .|..|+++.+.|..+ .+++... .+.. . ...... . +.. ....++.+.++|++++|+|...
T Consensus 6 ikVaIlGATGyvG~elirLL~~HP~~ei~~l~S~~~aG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~alp~~~-- 83 (183)
T d2cvoa1 6 VRIAVLGASGYTGAEIVRLLANHPQFRIKVMTADRKAGEQFGSVFPHLITQDLPNLVAVKDADFSNVDAVFCCLPHGT-- 83 (183)
T ss_dssp EEEEEESCSSHHHHHHHHHHTTCSSEEEEEEECSTTTTSCHHHHCGGGTTSCCCCCBCGGGCCGGGCSEEEECCSSSH--
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCceEEEEeccccCCCccccccccccccccccchhhhhhhhcccceeeeccccch--
Confidence 4699997 599999999999977 4666544 3222 1 111100 1 111 1123456789999999999442
Q ss_pred cccccHHHHhcCCCCcEEEEcCCCc
Q 006212 298 SKIFNDETFAKMKKGVRIVNVARGG 322 (656)
Q Consensus 298 ~~li~~~~l~~mK~gailINvaRg~ 322 (656)
..+....+.+...+|+.+.+-
T Consensus 84 ----s~~~~~~l~~~~~~v~~~~~~ 104 (183)
T d2cvoa1 84 ----TQEIIKGLPQELKIVDLSADF 104 (183)
T ss_dssp ----HHHHHHTSCSSCEEEECSSTT
T ss_pred ----HHHHHHHHHhcCcccccchhh
Confidence 344444555566666665443
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=84.01 E-value=0.95 Score=41.60 Aligned_cols=95 Identities=13% Similarity=0.071 Sum_probs=67.0
Q ss_pred HHHHHHhcCCCEEEEECCC-----CChhHHHHcCCeec-CHHHHhccCCEEEEccCCCccccccccHHHHhcCCCCcEEE
Q 006212 243 EVARRAKGLGMNVIAHDPY-----APADKARAVGVELV-SFDQALATADFISLHMPLNPTTSKIFNDETFAKMKKGVRIV 316 (656)
Q Consensus 243 ~vA~~lk~~G~~Vi~~d~~-----~~~~~a~~~g~~~~-~l~ell~~aDvV~l~~Plt~~T~~li~~~~l~~mK~gailI 316 (656)
..++++...|++|++=.-. -+.+...+.|+..+ +.++++ +||+|+-.-|.+ .+++..||+|.+++
T Consensus 21 ~~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilkv~~p~--------~~e~~~lk~~~~li 91 (193)
T d1pjca2 21 SSVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVKVKEPL--------PAEYDLMQKDQLLF 91 (193)
T ss_dssp HHHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEECSSCCC--------GGGGGGCCTTCEEE
T ss_pred HHHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEEeccCC--------HHHHHhhhcCceEE
Confidence 4677888899999985322 24555667788877 456666 689886554423 34678899999998
Q ss_pred EcCCCchhcHHHHHHhHhcCCeEEEEeeccCC
Q 006212 317 NVARGGVIDEEALVRALDSGVVAQAALDVFTE 348 (656)
Q Consensus 317 NvaRg~ivde~aL~~aL~~g~i~gA~lDV~~~ 348 (656)
-.-.- ....++++.|.+..|-..++|....
T Consensus 92 ~~l~p--~~~~ell~~l~~~~it~~s~E~ipr 121 (193)
T d1pjca2 92 TYLHL--AAARELTEQLMRVGLTAIAYETVEL 121 (193)
T ss_dssp ECCCG--GGCHHHHHHHHHHTCEEEEGGGCCC
T ss_pred EecCc--ccchHHHHHHHHcCCEEEEeeeccc
Confidence 87543 3456788889888887777776543
|
| >d1d7oa_ c.2.1.2 (A:) Enoyl-ACP reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=84.00 E-value=0.37 Score=46.37 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=33.9
Q ss_pred ccccCCCEEEEEecC---hhHHHHHHHHhcCCCEEEEECCC
Q 006212 224 GVSLVGKTLAVMGFG---KVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 224 g~~l~gktvGIIGlG---~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
..+|+||++.|-|.+ -||+++|++|...|++|+..++.
T Consensus 3 ~~~L~gK~alVTGass~~GIG~aiA~~la~~Ga~Vvi~~~~ 43 (297)
T d1d7oa_ 3 PIDLRGKRAFIAGIADDNGYGWAVAKSLAAAGAEILVGTWV 43 (297)
T ss_dssp CCCCTTCEEEEECCSSSSSHHHHHHHHHHHTTCEEEEEEEH
T ss_pred CcCCCCCEEEEECCCCCchHHHHHHHHHHHCCCEEEEEeCc
Confidence 467999999999986 59999999999999999988764
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=83.95 E-value=0.46 Score=42.78 Aligned_cols=64 Identities=22% Similarity=0.295 Sum_probs=42.2
Q ss_pred CCEEEEEecChhHHHHHH---HHh--cC-CCEEEEECCCCChhH---------HHHcCC--e---ecCHHHHhccCCEEE
Q 006212 229 GKTLAVMGFGKVGSEVAR---RAK--GL-GMNVIAHDPYAPADK---------ARAVGV--E---LVSFDQALATADFIS 288 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~---~lk--~~-G~~Vi~~d~~~~~~~---------a~~~g~--~---~~~l~ell~~aDvV~ 288 (656)
+.+|+|||.|.+|...+. .++ .+ +-++..+|....... ....+. . ..+.++.++.||+|+
T Consensus 2 ~mKI~iIGaGsvg~t~~~~~~l~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv 81 (171)
T d1obba1 2 SVKIGIIGAGSAVFSLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVI 81 (171)
T ss_dssp CCEEEEETTTCHHHHHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEE
T ss_pred CcEEEEECCCHHHhHHHHHHHHHhccccCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEe
Confidence 458999999999976443 332 33 469999998742211 111222 2 237899999999999
Q ss_pred EccC
Q 006212 289 LHMP 292 (656)
Q Consensus 289 l~~P 292 (656)
++.-
T Consensus 82 ~~~~ 85 (171)
T d1obba1 82 NTAM 85 (171)
T ss_dssp ECCC
T ss_pred eecc
Confidence 8753
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.88 E-value=0.38 Score=45.48 Aligned_cols=37 Identities=22% Similarity=0.340 Sum_probs=33.3
Q ss_pred ccCCCEEEEEecCh-hHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFGK-VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~-IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|-+. ||+++|++|...|++|+..|+..
T Consensus 4 sl~gK~~lITGas~GIG~aia~~la~~Ga~V~~~~r~~ 41 (237)
T d1uzma1 4 PFVSRSVLVTGGNRGIGLAIAQRLAADGHKVAVTHRGS 41 (237)
T ss_dssp CCCCCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 58999999998774 99999999999999999998764
|
| >d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD/NAD-linked reductases, N-terminal and central domains domain: Dihydrolipoamide dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=83.72 E-value=0.47 Score=39.42 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCEEEEEecChhHHHHHHHHhcCCCEEEEECCC
Q 006212 229 GKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPY 261 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~ 261 (656)
.+++.|||-|.+|-++|..++.+|.+|..+++.
T Consensus 21 p~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~ 53 (115)
T d1lvla2 21 PQHLVVVGGGYIGLELGIAYRKLGAQVSVVEAR 53 (115)
T ss_dssp CSEEEEECCSHHHHHHHHHHHHHTCEEEEECSS
T ss_pred CCeEEEECCCHHHHHHHHHHhhcccceEEEeee
Confidence 479999999999999999999999999998764
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=83.45 E-value=0.48 Score=42.42 Aligned_cols=50 Identities=26% Similarity=0.337 Sum_probs=40.4
Q ss_pred ccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe
Q 006212 224 GVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 224 g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
|....|.+|.|-| .|-+|....+.+|.+|++|++..... ..+.++++|+.
T Consensus 19 g~~~~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~~~~~lGad 70 (167)
T d1tt7a2 19 GLSPEKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADYLKQLGAS 70 (167)
T ss_dssp TCCGGGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHHHHHHTCS
T ss_pred cCCCCCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHHHHHhhccc
Confidence 3444577899988 59999999999999999999987654 56777777764
|
| >d2g17a1 c.2.1.3 (A:1-153,A:309-334) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Salmonella typhimurium [TaxId: 90371]
Probab=83.30 E-value=0.68 Score=41.64 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=53.3
Q ss_pred CEEEEEe-cChhHHHHHHHHhcC-CCEEEEE---CC--CCChhHHHH----cCC---e---ecCHHHHhccCCEEEEccC
Q 006212 230 KTLAVMG-FGKVGSEVARRAKGL-GMNVIAH---DP--YAPADKARA----VGV---E---LVSFDQALATADFISLHMP 292 (656)
Q Consensus 230 ktvGIIG-lG~IG~~vA~~lk~~-G~~Vi~~---d~--~~~~~~a~~----~g~---~---~~~l~ell~~aDvV~l~~P 292 (656)
.+|+|+| .|..|+++.+.|..+ .+++... .. ......... .+. . ..+.+....++|++++|+|
T Consensus 2 ikVaIiGATGyvG~eLlrlL~~HP~~ei~~l~~~s~~~~aGk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvf~alp 81 (179)
T d2g17a1 2 LNTLIVGASGYAGAELVSYVNRHPHMTITALTVSAQSNDAGKLISDLHPQLKGIVDLPLQPMSDVRDFSADVDVVFLATA 81 (179)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHCTTEEEEEEEEETTCTTTTCBHHHHCGGGTTTCCCBEEEESCGGGTCTTCCEEEECSC
T ss_pred cEEEEECcccHHHHHHHHHHHhCCCCceEeeEeecccccccccccccccccccccccccccchhhhhhhcccceeecccc
Confidence 3799999 899999999999987 6776543 11 111111110 011 1 1234556788999999999
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcCCC
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVARG 321 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINvaRg 321 (656)
.... . +..-...+.+..+||.+..
T Consensus 82 ~~~s-~----~~~~~~~~~~~~vIDlSad 105 (179)
T d2g17a1 82 HEVS-H----DLAPQFLQAGCVVFDLSGA 105 (179)
T ss_dssp HHHH-H----HHHHHHHHTTCEEEECSST
T ss_pred chhH-H----HHhhhhhhcCceeeccccc
Confidence 3321 1 1112225688999999843
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=82.78 E-value=0.64 Score=43.01 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..++|.|||.|..|-.+|..|+..|.+|.++++..
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~ 37 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERSP 37 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 46789999999999999999999999999999753
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=82.72 E-value=0.72 Score=41.66 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=40.2
Q ss_pred ccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCe
Q 006212 224 GVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVE 273 (656)
Q Consensus 224 g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~ 273 (656)
|..-.|.+|.|-| -|-+|....+.++..|.+|++...+. ..+.+++.|..
T Consensus 27 g~~~~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~lGa~ 78 (176)
T d1xa0a2 27 GLTPERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRVLGAK 78 (176)
T ss_dssp TCCGGGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHHTTCS
T ss_pred CCCCCCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHhcccc
Confidence 3445688999998 69999999999999999999987654 56777777763
|
| >d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: 2,4-dienoyl-CoA reductase species: Yeast (Candida tropicalis) [TaxId: 5482]
Probab=82.59 E-value=1.1 Score=40.34 Aligned_cols=86 Identities=16% Similarity=0.131 Sum_probs=57.3
Q ss_pred CCCEEEEE--ecChhHHHHHHHHhcCCCEEEEECCCC-Ch----hHHHHcCCeec-CHH------------HHh----cc
Q 006212 228 VGKTLAVM--GFGKVGSEVARRAKGLGMNVIAHDPYA-PA----DKARAVGVELV-SFD------------QAL----AT 283 (656)
Q Consensus 228 ~gktvGII--GlG~IG~~vA~~lk~~G~~Vi~~d~~~-~~----~~a~~~g~~~~-~l~------------ell----~~ 283 (656)
.|+++.|+ |.|.+|....+.+|.+|++|++.-+.. .. +..+++|...+ +.+ ++. ..
T Consensus 28 ~g~~vli~~ga~g~vG~~aiqlAk~~Ga~vI~~v~~~~~~~~~~~~~~~lGad~vi~~~~~~~~~~~~~v~~~~~~~g~~ 107 (189)
T d1gu7a2 28 PGKDWFIQNGGTSAVGKYASQIGKLLNFNSISVIRDRPNLDEVVASLKELGATQVITEDQNNSREFGPTIKEWIKQSGGE 107 (189)
T ss_dssp TTTCEEEESCTTSHHHHHHHHHHHHHTCEEEEEECCCTTHHHHHHHHHHHTCSEEEEHHHHHCGGGHHHHHHHHHHHTCC
T ss_pred CCCEEEEEeCCCchHHHHHHHHHhhcCCeEEEEEecccccchHHhhhhhccccEEEeccccchhHHHHHHHHHHhhccCC
Confidence 47889898 679999999999999999999864332 22 23466776422 211 111 23
Q ss_pred CCEEEEccCCCccccccccHHHHhcCCCCcEEEEcC
Q 006212 284 ADFISLHMPLNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 284 aDvV~l~~Plt~~T~~li~~~~l~~mK~gailINva 319 (656)
.|+++-|+. .+ .-...+..|+++..+|.++
T Consensus 108 vdvv~D~vg-~~-----~~~~~~~~l~~~G~~v~~G 137 (189)
T d1gu7a2 108 AKLALNCVG-GK-----SSTGIARKLNNNGLMLTYG 137 (189)
T ss_dssp EEEEEESSC-HH-----HHHHHHHTSCTTCEEEECC
T ss_pred ceEEEECCC-cc-----hhhhhhhhhcCCcEEEEEC
Confidence 788877764 11 1245677788888888886
|
| >d1duvg2 c.78.1.1 (G:151-333) Ornithine transcarbamoylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Ornithine transcarbamoylase species: Escherichia coli [TaxId: 562]
Probab=82.51 E-value=1.2 Score=40.14 Aligned_cols=94 Identities=17% Similarity=0.158 Sum_probs=62.5
Q ss_pred ccCCCEEEEEecC--hhHHHHHHHHhcCCCEEEEECCCC---Chh-------HHHHcCCe---ecCHHHHhccCCEEEEc
Q 006212 226 SLVGKTLAVMGFG--KVGSEVARRAKGLGMNVIAHDPYA---PAD-------KARAVGVE---LVSFDQALATADFISLH 290 (656)
Q Consensus 226 ~l~gktvGIIGlG--~IG~~vA~~lk~~G~~Vi~~d~~~---~~~-------~a~~~g~~---~~~l~ell~~aDvV~l~ 290 (656)
.+.|.+|++||=| ++..+++..+..|||++...-|.. +.. .+...|.. ..++++.++.+|+|..-
T Consensus 2 ~~~~l~i~~vGD~~nnv~~Sli~~~~~~g~~l~~~~P~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~a~~~aDvvyt~ 81 (183)
T d1duvg2 2 AFNEMTLVYAGDARNNMGNSMLEAAALTGLDLRLVAPQACWPEAALVTECRALAQQNGGNITLTEDVAKGVEGADFIYTD 81 (183)
T ss_dssp CGGGCEEEEESCTTSHHHHHHHHHHHHHCCEEEEECCGGGCCCHHHHHHHHHHHHHTTCEEEEESCHHHHHTTCSEEEEC
T ss_pred CcCCCEEEEEcCCccHHHHHHHHHHHHcCCEEEEEechHhhhhHHHHHHHHHHHHhcCCceEEEechhhccccCCEEEEE
Confidence 4678999999966 699999999999999999988742 211 12333443 23799999999999764
Q ss_pred cCCCcc--------------ccccccHHHHhcCCCCcEEEEcC
Q 006212 291 MPLNPT--------------TSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 291 ~Plt~~--------------T~~li~~~~l~~mK~gailINva 319 (656)
.=.... ....++.......++++++.-|.
T Consensus 82 ~w~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~MH~L 124 (183)
T d1duvg2 82 VWVSMGEAKEKWAERIALLREYQVNSKMMQLTGNPEVKFLHCL 124 (183)
T ss_dssp CSSCTTSCTTHHHHHHHHHGGGCBCHHHHHTTCCTTCEEEECS
T ss_pred ehhhhhhhhhhhhhhhhhhcccccccHHHHhcccCCeEEEccC
Confidence 321100 01122333344467788888775
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=82.45 E-value=0.39 Score=46.07 Aligned_cols=39 Identities=31% Similarity=0.318 Sum_probs=34.5
Q ss_pred ccccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 224 GVSLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 224 g~~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
...|.||++.|-| -+.||+++|+.|...|++|++.+++.
T Consensus 13 ~~sL~gK~~lITGas~GIG~aia~~la~~Ga~Vvi~~~~~ 52 (272)
T d1g0oa_ 13 SASLEGKVALVTGAGRGIGREMAMELGRRGCKVIVNYANS 52 (272)
T ss_dssp GGCCTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred CcCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEeCCc
Confidence 4579999999998 67899999999999999999987653
|
| >d2h7ma1 c.2.1.2 (A:2-269) Enoyl-ACP reductase {Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Mycobacterium tuberculosis, TB, gene InhA [TaxId: 1773]
Probab=82.37 E-value=0.48 Score=44.75 Aligned_cols=37 Identities=24% Similarity=0.299 Sum_probs=32.1
Q ss_pred ccCCCEEEEEec-Ch--hHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGF-GK--VGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGl-G~--IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
-|.||++.|.|. |. ||.++|++|...|++|+..++..
T Consensus 3 ~l~gK~~lItGaag~~GIG~aiA~~la~~Ga~Vil~~~~~ 42 (268)
T d2h7ma1 3 LLDGKRILVSGIITDSSIAFHIARVAQEQGAQLVLTGFDR 42 (268)
T ss_dssp TTTTCEEEECCCSSTTCHHHHHHHHHHHTTCEEEEEECSC
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHcCCEEEEEeCCh
Confidence 378999999995 54 99999999999999999887653
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=82.13 E-value=0.57 Score=45.94 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=31.9
Q ss_pred CCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 228 VGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 228 ~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
+.|+|.|||.|.-|-..|..|...|.+|++++...
T Consensus 1 k~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~ 35 (314)
T d2bi7a1 1 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRD 35 (314)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCC
Confidence 36899999999999999999999999999998764
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=81.90 E-value=0.42 Score=45.60 Aligned_cols=37 Identities=32% Similarity=0.434 Sum_probs=32.9
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|-+ -||+++|++|...|++|+..|++.
T Consensus 8 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~~~~r~~ 45 (255)
T d1fmca_ 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSDINA 45 (255)
T ss_dssp CCTTCEEEETTTTSHHHHHHHHHHHTTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 5899999999874 599999999999999999998753
|
| >d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]
Probab=81.79 E-value=0.54 Score=42.50 Aligned_cols=35 Identities=34% Similarity=0.709 Sum_probs=28.6
Q ss_pred EEEEEecChhHHHHHHHHhcCCCEEEEE-CCCCChh
Q 006212 231 TLAVMGFGKVGSEVARRAKGLGMNVIAH-DPYAPAD 265 (656)
Q Consensus 231 tvGIIGlG~IG~~vA~~lk~~G~~Vi~~-d~~~~~~ 265 (656)
+|||=|||+||+.+.|.+...+.+|.+. |+....+
T Consensus 2 kIgINGfGRIGR~~~R~~~~~~~~ivaINd~~~~~~ 37 (169)
T d1dssg1 2 KIGINGFGRIGRLVLRAALEMGAQVVAVNDPFIALE 37 (169)
T ss_dssp CEEEECCSHHHHHHHHHHHHHTCCEEEEECTTSCHH
T ss_pred eEEEECCcHHHHHHHHHHHhCCCcEEEECCCCcCHH
Confidence 6999999999999999988778888776 5555443
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=81.77 E-value=0.65 Score=44.08 Aligned_cols=38 Identities=21% Similarity=0.120 Sum_probs=33.4
Q ss_pred cccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 225 VSLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 225 ~~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
..|.||++.|.|- +-||+++|+.|...|++|+.+|++.
T Consensus 6 f~lenKvalITGas~GIG~a~a~~la~~Ga~V~~~~r~~ 44 (251)
T d2c07a1 6 YCGENKVALVTGAGRGIGREIAKMLAKSVSHVICISRTQ 44 (251)
T ss_dssp CCCSSCEEEEESTTSHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHcCCEEEEEECCH
Confidence 4678999999987 4699999999999999999999763
|
| >d1tuga1 c.78.1.1 (A:1-150,A:151-310) Aspartate carbamoyltransferase catalytic subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: ATC-like superfamily: Aspartate/ornithine carbamoyltransferase family: Aspartate/ornithine carbamoyltransferase domain: Aspartate carbamoyltransferase catalytic subunit species: Escherichia coli [TaxId: 562]
Probab=81.43 E-value=2.1 Score=41.90 Aligned_cols=64 Identities=20% Similarity=0.293 Sum_probs=47.7
Q ss_pred ccCCCEEEEEec---ChhHHHHHHHHhcC-CCEEEEECCCC--C-h---hHHHHcCCe--e-cCHHHHhccCCEEEE
Q 006212 226 SLVGKTLAVMGF---GKVGSEVARRAKGL-GMNVIAHDPYA--P-A---DKARAVGVE--L-VSFDQALATADFISL 289 (656)
Q Consensus 226 ~l~gktvGIIGl---G~IG~~vA~~lk~~-G~~Vi~~d~~~--~-~---~~a~~~g~~--~-~~l~ell~~aDvV~l 289 (656)
.+.|++|.++|- +++-.+.+..+..+ |+++..+.|.. . . +.+.+.|.. . .++++.++++|+|..
T Consensus 151 ~l~~~~i~~vGD~~~~~v~~S~~~~~~~~~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~aDvvy~ 227 (310)
T d1tuga1 151 RLDNLHVAMVGDLKYGRTVHSLTQALAKFDGNRFYFIAPDALAMPQYILDMLDEKGIAWSLHSSIEEVMAEVDILYM 227 (310)
T ss_dssp CSSSCEEEEESCTTTCHHHHHHHHHHTTSSSCEEEEECCGGGCCCHHHHHHHHTTTCCEEEESCGGGTTTTCSEEEE
T ss_pred CcccceEEEEeccccCcchHHHHHHHHhccCceEEEeCCcccccchhcccccccccceeeeeechhhhccCCceeee
Confidence 478999999997 78889999888888 57888887642 2 1 223344442 2 379999999999975
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=81.41 E-value=0.88 Score=43.68 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=33.1
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|- +.||+++|+.|...|++|+..|++.
T Consensus 2 ~L~gK~alITGas~GIG~aia~~la~~Ga~V~i~~r~~ 39 (276)
T d1bdba_ 2 KLKGEAVLITGGASGLGRALVDRFVAEGAKVAVLDKSA 39 (276)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 478999999986 5799999999999999999998763
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=81.31 E-value=0.71 Score=43.87 Aligned_cols=37 Identities=27% Similarity=0.234 Sum_probs=32.9
Q ss_pred ccCCCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|-|- +-||+++|+.|...|++|+..|++.
T Consensus 2 ~L~gK~alVTGas~GIG~aia~~la~~Ga~V~~~~r~~ 39 (256)
T d1k2wa_ 2 RLDGKTALITGSARGIGRAFAEAYVREGARVAIADINL 39 (256)
T ss_dssp TTTTEEEEEETCSSHHHHHHHHHHHHTTEEEEEEESCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 478999999987 6799999999999999999998763
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=81.26 E-value=0.78 Score=42.50 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=33.7
Q ss_pred ccCCCEEEEEecChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFGKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.-.+|+|.|||-|..|-..|..|+..|++|..++...
T Consensus 46 ~~~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~ 82 (233)
T d1djqa3 46 TKNKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAE 82 (233)
T ss_dssp CSSCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred ccCCceEEEEcccHHHHHHHHHHHHhccceeeEeecc
Confidence 3578999999999999999999999999999998754
|
| >d1qyca_ c.2.1.2 (A:) Phenylcoumaran benzylic ether reductase {Loblolly pine (Pinus taeda) [TaxId: 3352]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Phenylcoumaran benzylic ether reductase species: Loblolly pine (Pinus taeda) [TaxId: 3352]
Probab=81.03 E-value=2 Score=39.67 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=30.4
Q ss_pred CCEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCC
Q 006212 229 GKTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 229 gktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
-|+|.|.|- |.||+.+++.|...|++|++.++..
T Consensus 3 kkKILVtGatG~iG~~l~~~L~~~G~~V~~l~R~~ 37 (307)
T d1qyca_ 3 RSRILLIGATGYIGRHVAKASLDLGHPTFLLVRES 37 (307)
T ss_dssp CCCEEEESTTSTTHHHHHHHHHHTTCCEEEECCCC
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCCeEEEEECCC
Confidence 478999985 9999999999999999999998764
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=81.03 E-value=1.4 Score=39.37 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=40.8
Q ss_pred CCEEEEEecChhHHHHH--HHHhc---C-CCEEEEECCCCChhH--H-------HHcCC--e---ecCHHHHhccCCEEE
Q 006212 229 GKTLAVMGFGKVGSEVA--RRAKG---L-GMNVIAHDPYAPADK--A-------RAVGV--E---LVSFDQALATADFIS 288 (656)
Q Consensus 229 gktvGIIGlG~IG~~vA--~~lk~---~-G~~Vi~~d~~~~~~~--a-------~~~g~--~---~~~l~ell~~aDvV~ 288 (656)
.-+|.|||.|.+|...+ ..++. + +-++..+|....... + ...+. . ..+..+.++.||||+
T Consensus 3 ~~KI~iIGaGsv~~~~~~~~ll~~~~~l~~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vv 82 (167)
T d1u8xx1 3 SFSIVIAGGGSTFTPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVM 82 (167)
T ss_dssp CEEEEEECTTSSSHHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEE
T ss_pred CceEEEECCChhhhHHHHHHHHhhhhhcCCCEEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEE
Confidence 34799999999876533 33332 2 248999997642211 1 11122 1 237899999999999
Q ss_pred EccC
Q 006212 289 LHMP 292 (656)
Q Consensus 289 l~~P 292 (656)
++.-
T Consensus 83 itag 86 (167)
T d1u8xx1 83 AHIR 86 (167)
T ss_dssp ECCC
T ss_pred ECCC
Confidence 9874
|
| >d1sbya1 c.2.1.2 (A:1-254) Drosophila alcohol dehydrogenase {Fly (Drosophila lebanonensis) [TaxId: 7225]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Drosophila alcohol dehydrogenase species: Fly (Drosophila lebanonensis) [TaxId: 7225]
Probab=80.83 E-value=1.5 Score=41.43 Aligned_cols=86 Identities=10% Similarity=0.106 Sum_probs=51.3
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC-ChhHHHHcCCeecCHHHHhccCCEEEEccCCCc---ccccc
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA-PADKARAVGVELVSFDQALATADFISLHMPLNP---TTSKI 300 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~-~~~~a~~~g~~~~~l~ell~~aDvV~l~~Plt~---~T~~l 300 (656)
+|.||++.|-|-+ -||.++|+.+...|++|+..+++. ..+... .+........+.+.++=++. +.+.+
T Consensus 2 ~l~gK~vlITGgs~GIG~~~A~~la~~G~~vii~~r~~~~~~~~~-------~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 74 (254)
T d1sbya1 2 DLTNKNVIFVAALGGIGLDTSRELVKRNLKNFVILDRVENPTALA-------ELKAINPKVNITFHTYDVTVPVAESKKL 74 (254)
T ss_dssp CCTTCEEEEETTTSHHHHHHHHHHHHTCCSEEEEEESSCCHHHHH-------HHHHHCTTSEEEEEECCTTSCHHHHHHH
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEEECCcccHHHHH-------HHHhhCCCCCEEEEEeecCCCHHHHHHH
Confidence 5899999999887 599999999999999877765443 322211 13334445556666655442 12333
Q ss_pred ccHHHHhcCCCCcEEEEcC
Q 006212 301 FNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 301 i~~~~l~~mK~gailINva 319 (656)
+++ ..+...+=-+|||.+
T Consensus 75 ~~~-~~~~~g~iDilvnnA 92 (254)
T d1sbya1 75 LKK-IFDQLKTVDILINGA 92 (254)
T ss_dssp HHH-HHHHHSCCCEEEECC
T ss_pred HHH-HHHHcCCCCEEEeCC
Confidence 322 222233223677765
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=80.77 E-value=0.5 Score=45.04 Aligned_cols=37 Identities=35% Similarity=0.333 Sum_probs=32.7
Q ss_pred ccCCCEEEEEecC-hhHHHHHHHHhcCCCEEEEECCCC
Q 006212 226 SLVGKTLAVMGFG-KVGSEVARRAKGLGMNVIAHDPYA 262 (656)
Q Consensus 226 ~l~gktvGIIGlG-~IG~~vA~~lk~~G~~Vi~~d~~~ 262 (656)
.|.||++.|.|-+ -||+++|++|...|++|+..|++.
T Consensus 3 rL~gK~alITGas~GIG~aia~~la~~Ga~V~~~~~~~ 40 (253)
T d1hxha_ 3 RLQGKVALVTGGASGVGLEVVKLLLGEGAKVAFSDINE 40 (253)
T ss_dssp TTTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCH
Confidence 4899999999855 599999999999999999999763
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=80.62 E-value=0.85 Score=43.19 Aligned_cols=38 Identities=24% Similarity=0.239 Sum_probs=33.4
Q ss_pred ccCCCEEEEEe-cChhHHHHHHHHhcCCCEEEEECCCCC
Q 006212 226 SLVGKTLAVMG-FGKVGSEVARRAKGLGMNVIAHDPYAP 263 (656)
Q Consensus 226 ~l~gktvGIIG-lG~IG~~vA~~lk~~G~~Vi~~d~~~~ 263 (656)
.|.||++.|-| -+.||+++|++|...|++|+..|++..
T Consensus 2 ~l~GK~alITGas~GIG~aia~~la~~G~~V~~~~~~~~ 40 (248)
T d2d1ya1 2 LFAGKGVLVTGGARGIGRAIAQAFAREGALVALCDLRPE 40 (248)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSTT
T ss_pred ccCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHH
Confidence 37899999998 567999999999999999999988753
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.35 E-value=0.38 Score=43.59 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCCEEEEEe-cChhHHHHHHHHhcCCCE-EEEECCCC-C-hhHHHHcCCeec------CHHHHhcc-----CCEEEEccC
Q 006212 228 VGKTLAVMG-FGKVGSEVARRAKGLGMN-VIAHDPYA-P-ADKARAVGVELV------SFDQALAT-----ADFISLHMP 292 (656)
Q Consensus 228 ~gktvGIIG-lG~IG~~vA~~lk~~G~~-Vi~~d~~~-~-~~~a~~~g~~~~------~l~ell~~-----aDvV~l~~P 292 (656)
.+++|.|.| .|.+|....+.+|.+|++ |++.+... . ...+.+.|...+ ++.+.+++ +|+|+=++-
T Consensus 30 ~~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~~~l~~~~gad~vi~~~~~~~~~~~~~~~~~GvDvv~D~vG 109 (187)
T d1vj1a2 30 SNQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKCLFLTSELGFDAAVNYKTGNVAEQLREACPGGVDVYFDNVG 109 (187)
T ss_dssp SCCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHHHHHHHHSCCSEEEETTSSCHHHHHHHHCTTCEEEEEESSC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHHhhhhhcccceEEeeccchhHHHHHHHHhccCceEEEecCC
Confidence 357899999 599999999999999985 55555442 2 223445665321 34544444 788877664
Q ss_pred CCccccccccHHHHhcCCCCcEEEEcC
Q 006212 293 LNPTTSKIFNDETFAKMKKGVRIVNVA 319 (656)
Q Consensus 293 lt~~T~~li~~~~l~~mK~gailINva 319 (656)
. + .-...+..++++..++.++
T Consensus 110 g-~-----~~~~~~~~l~~~G~iv~~G 130 (187)
T d1vj1a2 110 G-D-----ISNTVISQMNENSHIILCG 130 (187)
T ss_dssp H-H-----HHHHHHTTEEEEEEEEEC-
T ss_pred c-h-----hHHHHhhhccccccEEEec
Confidence 1 1 1245667788888888776
|
| >d7mdha1 c.2.1.5 (A:23-197) Malate dehydrogenase {Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Sorghum (Sorghum vulgare), chloroplast [TaxId: 4558]
Probab=80.24 E-value=2 Score=38.63 Aligned_cols=98 Identities=13% Similarity=0.155 Sum_probs=60.1
Q ss_pred CEEEEEec-ChhHHHHHHHHhc---CCC----EEEEECCCCChhHHH------HcCC--------eecCHHHHhccCCEE
Q 006212 230 KTLAVMGF-GKVGSEVARRAKG---LGM----NVIAHDPYAPADKAR------AVGV--------ELVSFDQALATADFI 287 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~---~G~----~Vi~~d~~~~~~~a~------~~g~--------~~~~l~ell~~aDvV 287 (656)
.+|.|+|. |.||++++-+|.. ||. .+..+|.......+. +... ...+..+.+++||+|
T Consensus 25 ~kV~I~GA~G~Ig~~l~~~La~g~v~g~~~~i~L~L~di~~~~~~l~g~~mdl~d~a~~~~~~~~~~~~~~~~~~~aDvV 104 (175)
T d7mdha1 25 VNIAVSGAAGMISNHLLFKLASGEVFGQDQPIALKLLGSERSFQALEGVAMELEDSLYPLLREVSIGIDPYEVFEDVDWA 104 (175)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTTCTTCCEEEEEECCGGGHHHHHHHHHHHHTTTCTTEEEEEEESCHHHHTTTCSEE
T ss_pred cEEEEECCCcHHHHHHHHHHHcCcccCCCceEEEEEecCccccchhcchhhhhcccccccccCccccccchhhccCCceE
Confidence 47999995 9999999999874 443 566677554322211 1111 123788999999999
Q ss_pred EEccCCCccccccccHH--------------HHhc-CCCCcEEEEcCCCchhcHHHHH
Q 006212 288 SLHMPLNPTTSKIFNDE--------------TFAK-MKKGVRIVNVARGGVIDEEALV 330 (656)
Q Consensus 288 ~l~~Plt~~T~~li~~~--------------~l~~-mK~gailINvaRg~ivde~aL~ 330 (656)
++..-. +...++-..+ .+.+ .+++++|+=++ ..+|.-+++
T Consensus 105 vi~ag~-~rkpg~tR~Dll~~N~~I~k~~~~~i~~~a~~~~~vlvv~--NPvd~~t~i 159 (175)
T d7mdha1 105 LLIGAK-PRGPGMERAALLDINGQIFADQGKALNAVASKNVKVLVVG--NPCNTNALI 159 (175)
T ss_dssp EECCCC-CCCTTCCHHHHHHHHHHHHHHHHHHHHHHSCTTCEEEECS--SSHHHHHHH
T ss_pred EEeecc-CCCCCCcHHHHHHHHHHHHHHHHHHHHhhCCCCcEEEEec--CcHHHHHHH
Confidence 998742 2222222111 2222 46678777665 357776654
|
| >d1vl0a_ c.2.1.2 (A:) DTDP-4-dehydrorhamnose reductase RfbD {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: DTDP-4-dehydrorhamnose reductase RfbD species: Clostridium acetobutylicum [TaxId: 1488]
Probab=80.15 E-value=0.93 Score=42.30 Aligned_cols=56 Identities=18% Similarity=0.358 Sum_probs=39.6
Q ss_pred CEEEEEec-ChhHHHHHHHHhcCCCEEEEECCCCChhHHHHcCCeecCHHHHhc--cCCEEEEcc
Q 006212 230 KTLAVMGF-GKVGSEVARRAKGLGMNVIAHDPYAPADKARAVGVELVSFDQALA--TADFISLHM 291 (656)
Q Consensus 230 ktvGIIGl-G~IG~~vA~~lk~~G~~Vi~~d~~~~~~~a~~~g~~~~~l~ell~--~aDvV~l~~ 291 (656)
++|.|.|- |-||+.+++.|+..|++|++.|+... +. ....+++++++ +.|+|+-+.
T Consensus 2 MKIlItGasGfiG~~l~~~L~~~g~~Vi~~~r~~~-D~-----~d~~~~~~~l~~~~~d~vih~a 60 (281)
T d1vl0a_ 2 MKILITGANGQLGREIQKQLKGKNVEVIPTDVQDL-DI-----TNVLAVNKFFNEKKPNVVINCA 60 (281)
T ss_dssp EEEEEESTTSHHHHHHHHHHTTSSEEEEEECTTTC-CT-----TCHHHHHHHHHHHCCSEEEECC
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCEEEEeechhc-cC-----CCHHHHHHHHHHcCCCEEEeec
Confidence 46899996 99999999999999999999997631 00 01112455665 458776544
|