Citrus Sinensis ID: 006214

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650------

MREKISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

cccHHHHHHHHHHHHHHHHHcccEEEccccccccccccccEEEEEEEEcccccccccccccccccccccccccccccHHHHHccccccccccEEEEcccccEEEEccccccHHHHHHHHHHHHHHHEEEEEEccccEEEEEEEccEEEEEccccccccccccccccEEcccEEEEEEEccccccEEEEcccccccccccccccccccccEEEEEEEEEcccccccccccccccccccccccccccccccHHccccEEEEEEEEEEEEccccccccccccccccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccHHccccccccccccccccccccccccccHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc

cccHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEcccccEcccEEEEcccccccccccccHHHHHHHHcccccccccEEEEEcccccEEEEEEccccHHHHHHHHHHHHHHcEEEEEEccccEEEEEcccccEEEccccEEcEEccccccEEEEEEEEEEEEEEEcccccEEEEEEEcccccEEEcEccccccccEEEEEEEEEcEEccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccccHHHHHHHHccccccEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccEEEEcccccccccccEEEEEEccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccEEEHHHHHcccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc

MREKISMILWAFLFAVLFGQVcngfylpgsymhtysngeAIYTKVNSLTsietelpfsyyslpyckplrgVKKSAENLGEllmgdqidnspyrfrinknETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAkqngvsiqwtgfpvgytpgnsnddyiINHLKFTVLVHEYkgsgveiigtgeegmgviseaddkkasgyeivgfevvpcsvkydpevmtklhmydnitsvkcpseldksQIIRERERISFTYEVEFVksnirwpsrwDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGwklvvgdvfrepdhpkllCVMVGDGVQITGMAIVTIIFAALgfmspasrgMLLTGMIFLFLFLGIAAGYVAVRMWRTikgtsegwRSVAWSAACFFPGIVFVILTVLNFVLwgskstgalpiSLYFVLLSLWFCISvpltllggffgtraeeitypvrtnqipreiparkypswllvlgagtlpfgTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFdlqslsgpvsALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

MREKISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELlmgdqidnspyRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMydnitsvkcpseldksqIIRErerisftyevefvksnirwpsrWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEitypvrtnqipreipARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

MREKISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFllivllllvvvcaevsvvlTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

****ISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELD*******NEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSV***

******M*LWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKP************ELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNIT*************IRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYE********QMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

*REKISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDP******HMYDNITSV*****LDKS*IIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

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SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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MREKISMILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFxxxxxxxxxxxxxxxxxxxxxMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		656	2.2.26 [Sep-21-2011]
Q8BH24		643	Transmembrane 9 superfami	yes	no	0.942	0.961	0.393	1e-133
Q5RDY2		642	Transmembrane 9 superfami	yes	no	0.946	0.967	0.389	1e-133
Q4KLL4		643	Transmembrane 9 superfami	yes	no	0.942	0.961	0.393	1e-133
Q92544		642	Transmembrane 9 superfami	yes	no	0.946	0.967	0.389	1e-133
A5D7E2		642	Transmembrane 9 superfami	yes	no	0.946	0.967	0.392	1e-133
Q55FP0		641	Putative phagocytic recep	yes	no	0.948	0.970	0.379	1e-129
Q5R8Y6		663	Transmembrane 9 superfami	no	no	0.917	0.907	0.389	1e-124
P58021		662	Transmembrane 9 superfami	no	no	0.905	0.897	0.384	1e-123
Q99805		663	Transmembrane 9 superfami	no	no	0.905	0.895	0.384	1e-123
Q66HG5		663	Transmembrane 9 superfami	no	no	0.905	0.895	0.382	1e-123

>sp\|Q8BH24\|TM9S4_MOUSE Transmembrane 9 superfamily member 4 OS=Mus musculus GN=Tm9sf4 PE=2 SV=1	Back alignment and function desciption

 Score =  476 bits (1224), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 265/673 (39%), Positives = 400/673 (59%), Gaps = 55/673 (8%)

Query: 6   SMILWAFLFAVLFGQVCNG--FYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLP 63
           +MI W   F +L    C G  FY+PG     +   + +  K   LTS  T+LP+ YYSLP
Sbjct: 4   AMIWWP-RFLLLLCLTCKGSTFYVPGVAPINFHQNDPVEIKAVKLTSSRTQLPYEYYSLP 62

Query: 64  YCKPLRGVKKSAENLGELLMGDQIDNSPYRFRIN---KNETLFLCITTP--LSENEVKLL 118
           +C+P++ +   AENLGE+L GD+I N+P++  +N   K E L      P  L+  + +L+
Sbjct: 63  FCQPIK-ITYKAENLGEVLRGDRIVNTPFQVLMNSEKKCEVLCNQSNKPITLTVEQSRLV 121

Query: 119 KQRTRDLYQVNMILDNLPVMR----YAKQNGVS-------IQWT-GFPVGYTPGNSNDDY 166
            +R  + Y V++I DNLPV      Y+             +Q+  G+ +G+T  + N  Y
Sbjct: 122 AERITEEYYVHLIADNLPVATRLELYSSNRDSDDKKKEKDVQFEHGYRLGFT--DVNKIY 179

Query: 167 IINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKY-DP 225
           + NHL F +  H                     + ++ +   Y +V FEV+P S++  D 
Sbjct: 180 LHNHLSFILYYHR-------------------EDMEEDQEHTYRVVRFEVIPQSIRLEDL 220

Query: 226 EVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEG 285
           +   K        +   P E+D ++      ++ FTY V + +S+I+W SRWD YL M  
Sbjct: 221 KTGEKSSCTLPEGANSLPQEIDPTK----ENQLYFTYSVHWEESDIKWASRWDTYLTMSD 276

Query: 286 ARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVG 345
            ++HWFSI+NS++V+FFL+GI+ +I +RT+R+D+  Y   +KE   +   E SGWKLV G
Sbjct: 277 VQIHWFSIINSVVVVFFLSGILSMIIIRTLRKDIANY---NKEDDIEDTMEESGWKLVHG 333

Query: 346 DVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIA 405
           DVFR P +P +L  ++G G+Q+  M ++ I  A LG +SP+SRG L+T   FLF+F+G+ 
Sbjct: 334 DVFRPPQYPMILSSLLGSGIQLFCMILIVIFVAMLGMLSPSSRGALMTTACFLFMFMGVF 393

Query: 406 AGYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYF 465
            G+ A R++RT+KG    W+  A+  A  +PG+VF I  VLN  +WG  S+GA+P     
Sbjct: 394 GGFSAGRLYRTLKG--HRWKKGAFCTATLYPGVVFGICFVLNCFIWGKHSSGAVPFPTMV 451

Query: 466 VLLSLWFCISVPLTLLGGFFGTRAEEITYPVRTNQIPREIPARKY--PSWLLVLGAGTLP 523
            LL +WF IS+PL  LG +FG R +    PVRTNQIPR+IP +++    ++ +L AG LP
Sbjct: 452 ALLCMWFGISLPLVYLGYYFGFRKQPYDNPVRTNQIPRQIPEQRWYMNRFVGILMAGILP 511

Query: 524 FGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWK 583
           FG +FIELFFI S+IW  +FYY+FGFL +V ++LVV C+++S+V+ Y  LC ED+RWWW+
Sbjct: 512 FGAMFIELFFIFSAIWENQFYYLFGFLFLVFIILVVSCSQISIVMVYFQLCAEDYRWWWR 571

Query: 584 AFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSF 643
            F  SG  A YV +Y+I Y V  L  +   + +LLY GY+ +M ++  L TGTIGF  ++
Sbjct: 572 NFLVSGGSAFYVLVYAIFYFVNKLDIVEF-IPSLLYFGYTTLMVLSFWLLTGTIGFYAAY 630

Query: 644 YFVHYLFSSVKID 656
            FV  ++++VKID
Sbjct: 631 MFVRKIYAAVKID 643

Mus musculus (taxid: 10090)

>sp\|Q5RDY2\|TM9S4_PONAB Transmembrane 9 superfamily member 4 OS=Pongo abelii GN=TM9SF4 PE=2 SV=1	Back alignment and function description

>sp\|Q4KLL4\|TM9S4_RAT Transmembrane 9 superfamily member 4 OS=Rattus norvegicus GN=Tm9sf4 PE=2 SV=1	Back alignment and function description

>sp\|Q92544\|TM9S4_HUMAN Transmembrane 9 superfamily member 4 OS=Homo sapiens GN=TM9SF4 PE=1 SV=2	Back alignment and function description

>sp\|A5D7E2\|TM9S4_BOVIN Transmembrane 9 superfamily member 4 OS=Bos taurus GN=TM9SF4 PE=2 SV=2	Back alignment and function description

>sp\|Q55FP0\|PHG1A_DICDI Putative phagocytic receptor 1a OS=Dictyostelium discoideum GN=phg1a PE=2 SV=1	Back alignment and function description

>sp\|Q5R8Y6\|TM9S2_PONAB Transmembrane 9 superfamily member 2 OS=Pongo abelii GN=TM9SF2 PE=2 SV=1	Back alignment and function description

>sp\|P58021\|TM9S2_MOUSE Transmembrane 9 superfamily member 2 OS=Mus musculus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

>sp\|Q99805\|TM9S2_HUMAN Transmembrane 9 superfamily member 2 OS=Homo sapiens GN=TM9SF2 PE=1 SV=1	Back alignment and function description

>sp\|Q66HG5\|TM9S2_RAT Transmembrane 9 superfamily member 2 OS=Rattus norvegicus GN=Tm9sf2 PE=2 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		656
224068823		650	predicted protein [Populus trichocarpa]	0.990	1.0	0.881	0.0
255567166		654	Endosomal P24A protein precursor, putati	0.995	0.998	0.891	0.0
359485868		662	PREDICTED: transmembrane 9 superfamily m	0.996	0.987	0.868	0.0
357462395		744	Transmembrane 9 superfamily protein memb	0.989	0.872	0.862	0.0
356554020		661	PREDICTED: transmembrane 9 superfamily m	0.990	0.983	0.857	0.0
356501751		661	PREDICTED: transmembrane 9 superfamily m	0.990	0.983	0.854	0.0
356575080		657	PREDICTED: transmembrane 9 superfamily m	0.986	0.984	0.853	0.0
357495577		663	Transmembrane 9 superfamily protein memb	1.0	0.989	0.838	0.0
240255797		652	endomembrane family protein 70 [Arabidop	0.983	0.989	0.857	0.0
449475668		659	PREDICTED: transmembrane 9 superfamily m	0.967	0.963	0.851	0.0

>gi\|224068823\|ref\|XP_002302834.1\| predicted protein [Populus trichocarpa] gi\|222844560\|gb\|EEE82107.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score = 1176 bits (3042), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/650 (88%), Positives = 613/650 (94%)

Query: 7   MILWAFLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCK 66
           MI WAFL   LFG  CNGFYLPGSYMHTYS G+AI+ KVNSLTSIETELPFSYYSLPYC+
Sbjct: 1   MICWAFLLLALFGNACNGFYLPGSYMHTYSPGDAIFAKVNSLTSIETELPFSYYSLPYCQ 60

Query: 67  PLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLY 126
           P  GVKKSAENLGELLMGDQIDNSPYRFR+N NE+++LC T PLSE+EVKLLKQRT DLY
Sbjct: 61  PKEGVKKSAENLGELLMGDQIDNSPYRFRMNVNESVYLCTTKPLSEHEVKLLKQRTHDLY 120

Query: 127 QVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVE 186
           QVNMILDNLPVMRYAKQN + IQWTGFPVGYTP NSNDDYIINHLKFTVLVHEY+GSGVE
Sbjct: 121 QVNMILDNLPVMRYAKQNEIDIQWTGFPVGYTPQNSNDDYIINHLKFTVLVHEYEGSGVE 180

Query: 187 IIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSEL 246
           IIGTGEEG+GVISEAD+KKASG+EIVGF VVPCSVKYDP+ M K  +YD ++SV CP +L
Sbjct: 181 IIGTGEEGLGVISEADEKKASGFEIVGFVVVPCSVKYDPDAMIKHQIYDKVSSVSCPLDL 240

Query: 247 DKSQIIRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGI 306
           DKSQIIRE+ERISFTYEVEFVKS IRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGI
Sbjct: 241 DKSQIIREQERISFTYEVEFVKSEIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGI 300

Query: 307 VFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQ 366
           VF+IFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPD  KLLC+MVGDGVQ
Sbjct: 301 VFIIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDCSKLLCIMVGDGVQ 360

Query: 367 ITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRS 426
           ITGMA+VTIIFAA GFMSPASRGMLLTGMI L+LFLGI AGYVAVR+WRTIKGTSEGWRS
Sbjct: 361 ITGMAVVTIIFAAFGFMSPASRGMLLTGMILLYLFLGIVAGYVAVRLWRTIKGTSEGWRS 420

Query: 427 VAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFG 486
           V+WS ACFFPGIVF+ILT+LNF+LWGS+STGA+PISLYFVLL+LWFCISVPLTLLGGF G
Sbjct: 421 VSWSVACFFPGIVFLILTILNFILWGSQSTGAIPISLYFVLLALWFCISVPLTLLGGFMG 480

Query: 487 TRAEEITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYV 546
           TRAE I YPVRTNQIPREIPARK P W+LVLGAGTLPFGTLFIELFFILSSIWLGRFYYV
Sbjct: 481 TRAEAIQYPVRTNQIPREIPARKLPPWVLVLGAGTLPFGTLFIELFFILSSIWLGRFYYV 540

Query: 547 FGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFD 606
           FGFLLIVLLLLV+VCAEVSVVLTYMHLCVEDWRWWWKAF+ASGSV+++VFLYSINYLVFD
Sbjct: 541 FGFLLIVLLLLVIVCAEVSVVLTYMHLCVEDWRWWWKAFYASGSVSIFVFLYSINYLVFD 600

Query: 607 LQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 656
           LQSLSGPVSA+LYLGYSLI+AVAIML+TGTIGFLTSFYFVHYLFSSVKID
Sbjct: 601 LQSLSGPVSAILYLGYSLIIAVAIMLSTGTIGFLTSFYFVHYLFSSVKID 650

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|255567166\|ref\|XP_002524564.1\| Endosomal P24A protein precursor, putative [Ricinus communis] gi\|223536117\|gb\|EEF37772.1\| Endosomal P24A protein precursor, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|359485868\|ref\|XP_002262879.2\| PREDICTED: transmembrane 9 superfamily member 4-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357462395\|ref\|XP_003601479.1\| Transmembrane 9 superfamily protein member [Medicago truncatula] gi\|355490527\|gb\|AES71730.1\| Transmembrane 9 superfamily protein member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|356554020\|ref\|XP_003545348.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356501751\|ref\|XP_003519687.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|356575080\|ref\|XP_003555670.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Glycine max]	Back alignment and taxonomy information

>gi\|357495577\|ref\|XP_003618077.1\| Transmembrane 9 superfamily protein member [Medicago truncatula] gi\|355519412\|gb\|AET01036.1\| Transmembrane 9 superfamily protein member [Medicago truncatula]	Back alignment and taxonomy information

>gi\|240255797\|ref\|NP_193002.4\| endomembrane family protein 70 [Arabidopsis thaliana] gi\|332657760\|gb\|AEE83160.1\| endomembrane family protein 70 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|449475668\|ref\|XP_004154518.1\| PREDICTED: transmembrane 9 superfamily member 4-like [Cucumis sativus]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		656
TAIR\|locus:2135620		652	AT4G12650 [Arabidopsis thalian	0.983	0.989	0.827	7.8e-300
TAIR\|locus:2183710		648	EMP1 "endomembrane protein 1"	0.945	0.956	0.423	1.8e-133
WB\|WBGene00014119		656	ZK858.6 [Caenorhabditis elegan	0.660	0.660	0.419	8.4e-121
FB\|FBgn0028541		630	TM9SF4 [Drosophila melanogaste	0.661	0.688	0.431	2.8e-120
UNIPROTKB\|F1NVX7		642	TM9SF4 "Uncharacterized protei	0.945	0.965	0.382	6.7e-120
TAIR\|locus:2047565		637	AT2G24170 [Arabidopsis thalian	0.850	0.875	0.416	1.1e-117
ZFIN\|ZDB-GENE-040426-1575		651	tm9sf4 "transmembrane 9 superf	0.945	0.952	0.381	3e-117
UNIPROTKB\|F1PWE3		642	TM9SF4 "Uncharacterized protei	0.954	0.975	0.380	7.9e-117
MGI\|MGI:2139220		643	Tm9sf4 "transmembrane 9 superf	0.949	0.968	0.381	7.9e-117
RGD\|1307768		643	Tm9sf4 "transmembrane 9 superf	0.948	0.967	0.378	1.6e-116

TAIR\|locus:2135620 AT4G12650 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 2878 (1018.2 bits), Expect = 7.8e-300, P = 7.8e-300
 Identities = 534/645 (82%), Positives = 582/645 (90%)

Query:    12 FLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGV 71
             F+  V   Q+CNGFYLPGSYMHTYS+G++I+ KVNSLTSIETELPFSYYSLPYC+PL G+
Sbjct:     8 FVLLVFVSQLCNGFYLPGSYMHTYSDGDSIFAKVNSLTSIETELPFSYYSLPYCQPLEGI 67

Query:    72 KKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENEVKLLKQRTRDLYQVNMI 131
             KKSAENLGELLMGDQIDNS YRFR+  NE+L+LC T+PL+E+EVKLLKQRTR+LYQVNMI
Sbjct:    68 KKSAENLGELLMGDQIDNSAYRFRMRTNESLYLCTTSPLNEHEVKLLKQRTRELYQVNMI 127

Query:   132 LDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDDYIINHLKFTVLVHEYKGSGVEIIGTG 191
             LDNLP +R+AKQNGV+IQWTG+PVGY+P NSNDDYIINHLKF VLVHEY+G+ +E+IGTG
Sbjct:   128 LDNLPALRFAKQNGVTIQWTGYPVGYSPPNSNDDYIINHLKFKVLVHEYEGNVMEVIGTG 187

Query:   192 EEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQI 251
             EEGMGVISEAD KKA GYEIVGFEVVPCSVKYD E MTKLHMYD + SV CP ELDK+QI
Sbjct:   188 EEGMGVISEADKKKALGYEIVGFEVVPCSVKYDAEKMTKLHMYDPVPSVNCPLELDKAQI 247

Query:   252 IRERERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIF 311
             I+E ERI+FTYEVEFVKS  RWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIF
Sbjct:   248 IKEHERITFTYEVEFVKSETRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIF 307

Query:   312 LRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMA 371
             LRTVRRDLT+YEELDKEAQAQMNEELSGWKLVVGDVFREP+  KLLC+MVGDGV+ITGMA
Sbjct:   308 LRTVRRDLTKYEELDKEAQAQMNEELSGWKLVVGDVFREPEMSKLLCIMVGDGVRITGMA 367

Query:   372 IVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYVAVRMWRTIKGTSEGWRSVAWSA 431
             +VTI+FAALGFMSPASRGMLLTGMI L+LFLGI AGY  VR+WRT+KGTSEGWRS++WS 
Sbjct:   368 VVTIVFAALGFMSPASRGMLLTGMIILYLFLGIVAGYAGVRLWRTVKGTSEGWRSLSWSI 427

Query:   432 ACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFGTRAEE 491
             ACFFPGI FVILTVLNF+LW S STGA+PISLYF LL+LWFCISVPLTL GGF GTRAE 
Sbjct:   428 ACFFPGIAFVILTVLNFLLWSSNSTGAIPISLYFELLALWFCISVPLTLFGGFLGTRAEA 487

Query:   492 ITYPVRTNQIPREIPARKYPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFXX 551
             I +PVRTNQIPREIP RKYPSWLLVLGAGTLPFGTLFIELFFI SSIWLGRFYYVFGF  
Sbjct:   488 IQFPVRTNQIPREIPERKYPSWLLVLGAGTLPFGTLFIELFFIFSSIWLGRFYYVFGFLL 547

Query:   552 XXXXXXXXXXXXXXXXXTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLS 611
                              TYMHLCVEDWRWWWKAF+ASGSVALYVF YSINYLVFDLQSLS
Sbjct:   548 IVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFYASGSVALYVFAYSINYLVFDLQSLS 607

Query:   612 GPVSALLYLGYSLIMAVAIMLATGTIGFLTSFYFVHYLFSSVKID 656
             GPVSA+LY+GYSL+MA+AIMLATGTIGFLTSFYFVHYLFSSVKID
Sbjct:   608 GPVSAMLYIGYSLLMAIAIMLATGTIGFLTSFYFVHYLFSSVKID 652

GO:0016021 "integral to membrane" evidence=IEA;ISS

GO:0005773 "vacuole" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

TAIR\|locus:2183710 EMP1 "endomembrane protein 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00014119 ZK858.6 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

FB\|FBgn0028541 TM9SF4 [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

UNIPROTKB\|F1NVX7 TM9SF4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

TAIR\|locus:2047565 AT2G24170 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-1575 tm9sf4 "transmembrane 9 superfamily protein member 4" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

UNIPROTKB\|F1PWE3 TM9SF4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

MGI\|MGI:2139220 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1307768 Tm9sf4 "transmembrane 9 superfamily protein member 4" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8BH24	TM9S4_MOUSE	No assigned EC number	0.3937	0.9420	0.9611	yes	no
Q5RDY2	TM9S4_PONAB	No assigned EC number	0.3899	0.9466	0.9672	yes	no
Q4KLL4	TM9S4_RAT	No assigned EC number	0.3937	0.9420	0.9611	yes	no
Q04562	TMN2_YEAST	No assigned EC number	0.3146	0.9207	0.8988	yes	no
A5D7E2	TM9S4_BOVIN	No assigned EC number	0.3929	0.9466	0.9672	yes	no
Q55FP0	PHG1A_DICDI	No assigned EC number	0.3792	0.9481	0.9703	yes	no
Q92544	TM9S4_HUMAN	No assigned EC number	0.3899	0.9466	0.9672	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		656
pfam02990		518	pfam02990, EMP70, Endomembrane protein 70	0.0

>gnl\|CDD\|217309 pfam02990, EMP70, Endomembrane protein 70	Back alignment and domain information

 Score =  594 bits (1533), Expect = 0.0
 Identities = 249/568 (43%), Positives = 337/568 (59%), Gaps = 58/568 (10%)

Query: 55  LPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCITTPLSENE 114
            P+ YYSLP+C+P   +K  +E+LGE+L GD+I NSPY+ +  + +   +     L+  +
Sbjct: 1   EPYEYYSLPFCRP-EKIKHKSESLGEVLFGDRIYNSPYKLKFLEEKECEVLCAVKLTSED 59

Query: 115 VKLLKQRTRDLYQVNMILDNLPVMRYAKQNGVSIQWTGFPVGYTPGNSNDD--YIINHLK 172
           VK  ++   + Y V  ++DNLPV  +     V  +  GF  G+  G   ++  Y+ NHL 
Sbjct: 60  VKFFRKAIEEGYYVQWLIDNLPVAGFVG--KVDNKGVGFESGFPLGFQTEEKYYLFNHLD 117

Query: 173 FTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLH 232
           F +  H                        D+    Y IVG EV P SVK          
Sbjct: 118 FVIEYH------------------------DRDNDDYRIVGIEVTPRSVKPSGC------ 147

Query: 233 MYDNITSVKCPSELDKSQIIRERER--ISFTYEVEFVKSNIRWPSRWDAYLK-MEGARVH 289
                      S     Q + E +   ++FTY V++ +S+++W SRWD YL  M   ++H
Sbjct: 148 -----------STTSSPQELDEGKENELTFTYSVKWKESDVKWASRWDKYLDAMHDLQIH 196

Query: 290 WFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELDKEAQAQMNEELSGWKLVVGDVFR 349
           WFSI+NSL+++ FL+GIV +I +RT+RRD+ RY ELD++  AQ   E SGWKLV GDVFR
Sbjct: 197 WFSIINSLVIVLFLSGIVSMILMRTLRRDIARYNELDEDEDAQ---EESGWKLVHGDVFR 253

Query: 350 EPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAAGYV 409
            P +P LL  +VG GVQ+  M I TI+FA LGF+SP++RG LLT  I L+   G  AGYV
Sbjct: 254 PPRNPMLLSALVGSGVQLLLMVIGTIVFACLGFLSPSNRGSLLTAAIVLYALTGFVAGYV 313

Query: 410 AVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLS 469
           + R+++T KG    W+      A  FPGIVFVI  VLNFVLW   S+GA+P      LL 
Sbjct: 314 SARLYKTFKGK--KWKRNLILTAFLFPGIVFVIFFVLNFVLWAYGSSGAIPFGTIVALLL 371

Query: 470 LWFCISVPLTLLGGFFGTRAEEIT-YPVRTNQIPREIPARK--YPSWLLVLGAGTLPFGT 526
           LWF +SVPLT LGG  G R      +PVRTNQIPR+IP +         +L  G LPFG 
Sbjct: 372 LWFLVSVPLTFLGGIVGFRNRAGEQHPVRTNQIPRQIPEQPWYLSPLPGILMGGILPFGA 431

Query: 527 LFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEVSVVLTYMHLCVEDWRWWWKAFF 586
           +FIELFFI +S+WL + YY+FGFL +V ++LVVVC+EV++VLTY  LC ED+RWWW++F 
Sbjct: 432 IFIELFFIFTSLWLHKIYYMFGFLFLVFIILVVVCSEVTIVLTYFQLCAEDYRWWWRSFL 491

Query: 587 ASGSVALYVFLYSINYLVFDLQSLSGPV 614
            SGS A+YVFLYSI Y    L+ +SG V
Sbjct: 492 TSGSTAVYVFLYSIYYFFTKLK-ISGFV 518

Length = 518

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		656
KOG1278		628	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
KOG1277		593	consensus Endosomal membrane proteins, EMP70 [Intr	100.0
PF02990		521	EMP70: Endomembrane protein 70; InterPro: IPR00424	100.0
PF12670		116	DUF3792: Protein of unknown function (DUF3792); In	84.71
PF11368		248	DUF3169: Protein of unknown function (DUF3169); In	82.56

>KOG1278 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

Probab=100.00  E-value=2.4e-202  Score=1611.00  Aligned_cols=608  Identities=52%  Similarity=0.967  Sum_probs=571.1

Q ss_pred             HHHHHHhhcccceeecCCCCCcCCCCCCceEEEEeecccCCCCcccccccCCCCCCCCcccccccchhhhhhcCccccCc
Q 006214           12 FLFAVLFGQVCNGFYLPGSYMHTYSNGEAIYTKVNSLTSIETELPFSYYSLPYCKPLRGVKKSAENLGELLMGDQIDNSP   91 (656)
Q Consensus        12 ~~~~~~~~~~~~~fylpg~~p~~Y~~Gd~V~v~vNkl~s~~~~~~y~Yy~lpfC~p~~~~~~~~~~lGeiL~Gdri~~S~   91 (656)
                      ++++.++.+.+.+||+||.+|.+|++||+++++|||++|.++|+||+||++|||+|+ ++++++|||||+|+|||++|||
T Consensus        14 ~ll~~~~~~~~~~FylpG~aPv~f~~gd~i~l~vnklts~~t~lpY~YY~~~Fc~p~-~i~~~~EnLGeVl~GDRi~nSP   92 (628)
T KOG1278|consen   14 LLLVSLLLSTSSAFYLPGVAPVNFCSGDPIELKVNKLTSSRTQLPYEYYSLPFCRPE-KIKKQSENLGEVLRGDRIENSP   92 (628)
T ss_pred             HHHHHHHHhcccceecCCcCCccCCCCCceEEEEEEeeccccccCcccccccccCcc-ccCCcccchhceeccCcccCCC
Confidence            344444445689999999999999999999999999999999999999999999998 6999999999999999999999


Q ss_pred             eEEEecccccc-ccccccCCCHHHHHHHHHHHHhccEEEEEEeccceE-EEec-cCCeeeeecCcccceeCC-CCCceee
Q 006214           92 YRFRINKNETL-FLCITTPLSENEVKLLKQRTRDLYQVNMILDNLPVM-RYAK-QNGVSIQWTGFPVGYTPG-NSNDDYI  167 (656)
Q Consensus        92 y~i~f~~~~~c-~lC~~~~~t~~~~~~l~~~I~~~Y~~~~~iDnLPv~-~~~~-~~~~~~y~~GfplG~~~~-~~~~~yL  167 (656)
                      |+++|++|++| .+|+ +++++++++.++|+|+++|++||++||||++ +... ++++.+|.+|||+|+.+. +.+++|+
T Consensus        93 y~~~m~e~~~C~~lC~-~k~~~~~~~~l~~~I~~~Y~v~wivDnlPva~~~~~~~~~~~~y~~GfplG~~~~~~~~~~y~  171 (628)
T KOG1278|consen   93 YKFKMLENQPCETLCA-TKLDKEDAKLLKKLIREGYVVNWIVDNLPVATRYERSDDGKVYYGTGFPLGFKGPKDEDKYYL  171 (628)
T ss_pred             ceEecccCCcchhhhc-ccCCHHHHHHHHHHHhhccEeeeeecCCceeEEEeecCCCceEeccCccceeccCCCccceeE
Confidence            99999999999 9997 6899999999999999999999999999985 4333 457889999999999864 4556799


Q ss_pred             eeeEEEEEEEeccCCCCceeecccCCCccccccccccCCCCcEEEEEEEEeeccCCChhhhhhcccccCccccCCCCCCC
Q 006214          168 INHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIVGFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELD  247 (656)
Q Consensus       168 ~NH~~f~I~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IVgf~V~P~Sv~~~~~~~~~~~~~~~~~~~~C~~~~~  247 (656)
                      +||++|+|+||++++                        ++||||||||+|+|++|+....++.+     .+.+|+.+.+
T Consensus       172 ~NHl~~~i~yH~~~~------------------------~~~riVgfeV~P~Si~~~~~~~~~~~-----~~~~c~~~~~  222 (628)
T KOG1278|consen  172 HNHLDFVIRYHRDDN------------------------DKYRIVGFEVKPVSIKHEHEKGDSKN-----SLPTCSIPEK  222 (628)
T ss_pred             eeeEEEEEEEEecCC------------------------CceEEEEEEEEeeeeecccCCCcccc-----cCCcccCCCC
Confidence            999999999998753                        35899999999999998654322221     2357876666


Q ss_pred             ccccccc-CeeEEEEEEEEEEecCCCCcchhhhhccCCccchhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhc
Q 006214          248 KSQIIRE-RERISFTYEVEFVKSNIRWPSRWDAYLKMEGARVHWFSILNSLMVIFFLAGIVFVIFLRTVRRDLTRYEELD  326 (656)
Q Consensus       248 ~~~~~~~-~~~i~fTYSV~w~~s~~~w~~Rwd~Yl~~~~~~ihw~SIiNS~~ivl~L~~~v~~Il~R~lr~D~~~Yn~~~  326 (656)
                      +++++++ +++|.|||||+|+|||++|++|||.|+++++.+||||||+||++||+||+|+|++|++||||||++|||++|
T Consensus       223 ~~~~~e~~~~~i~fTYsV~f~esdi~WasRWD~yL~m~~~qIhWfSIiNSlvIVlfLSgiv~mI~lRtl~rDiarYne~d  302 (628)
T KOG1278|consen  223 PLELDEGEETEIVFTYSVKFEESDIKWASRWDYYLHMEDVQIHWFSIINSLVIVLFLSGIVAMIMLRTLYRDIARYNELD  302 (628)
T ss_pred             ccccCCCCceEEEEEEEEEEEeccCcchhhHHHHhcCCCCceEEEehhhhHHHHHHHHHHHHHHHHHHHHHhHhhhcccc
Confidence            6666643 667999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             HHHHHhhhhhcccceeEeccccCCCCCccceeeeeccchhhHHHHHHHHHHHHhcccCCCCchhHHHHHHHHHHHhhhcc
Q 006214          327 KEAQAQMNEELSGWKLVVGDVFREPDHPKLLCVMVGDGVQITGMAIVTIIFAALGFMSPASRGMLLTGMIFLFLFLGIAA  406 (656)
Q Consensus       327 ~~~~~~~~~ee~GWKlvhgDVFR~P~~~~lls~lvG~G~Qll~~~~~~l~~a~~g~lsp~~rg~l~t~~i~ly~~~g~~s  406 (656)
                      .|+|+   +||+|||||||||||||+++|+||++||+|+|+++|++++++||++|++||++||+++|+++++|+++|++|
T Consensus       303 ~~~d~---~Ee~GWKLVhGDVFR~P~~~~lLsv~vGsGvQ~l~M~~vti~fA~lGflSPs~RGsLmT~~~~l~v~~G~~a  379 (628)
T KOG1278|consen  303 LDDDA---QEESGWKLVHGDVFRPPRNSMLLSVLVGSGVQLLGMILVTIFFACLGFLSPSSRGSLMTAMVLLFVFMGFVA  379 (628)
T ss_pred             chhhh---hhhcceEEeecccccCCCCCeEEEEEeccChhhhHHHHHHHHHHHhccCCccccccHHHHHHHHHHHHHHhh
Confidence            87766   667999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhHHHHHhhcCCcchhhHHHHhhhcchhHHHHHHHHHHHHHHHhhcCCCCcchHHHHHHHHHHHHhhccccchhhhhc
Q 006214          407 GYVAVRMWRTIKGTSEGWRSVAWSAACFFPGIVFVILTVLNFVLWGSKSTGALPISLYFVLLSLWFCISVPLTLLGGFFG  486 (656)
Q Consensus       407 Gy~S~r~yk~~~g~~~~W~~~~~lt~~~~P~~~~~i~~ilN~~~~~~~Ss~aipf~ti~~l~~lw~~vs~PL~~lG~~~g  486 (656)
                      ||+|+|+||+++|  ++||+++++|++++||++|++++++|+++|+++||+|+||+|+++++++||+||+||+++|+++|
T Consensus       380 gY~s~rlyk~~~g--~~wk~~~~lta~l~PGivf~~~f~lN~~lW~~~SSgAvPF~T~~~ll~LwF~isVPLsf~G~y~g  457 (628)
T KOG1278|consen  380 GYVSARLYKTFKG--REWKRNAILTAFLFPGIVFAIFFVLNFFLWGKHSSGAVPFSTMVALLFLWFGISVPLSFVGGYFG  457 (628)
T ss_pred             hhhhhhhHhhhcC--CcchhhHHhhhhhcchHHHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHhhhhHHHhhHHhh
Confidence            9999999999999  99999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCcccCCCCCCCCCCC--CCcceeeeccccccchhhHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHH
Q 006214          487 TRAEEITYPVRTNQIPREIPARK--YPSWLLVLGAGTLPFGTLFIELFFILSSIWLGRFYYVFGFLLIVLLLLVVVCAEV  564 (656)
Q Consensus       487 ~k~~~~~~P~r~n~iPR~IP~qp--~~~~~~~l~~GilPF~~i~iEl~~i~~S~W~~~~yy~fgfL~i~~iil~i~~a~v  564 (656)
                      +|++++|+|+||||||||||+||  +++++.+++||++||++|||||+||++|+|.||+||+|||||++++||+++|||+
T Consensus       458 ~kk~~~e~PvrTNqIpRqIP~q~~y~~~~~~ili~GilPFg~ifIELfFI~~SiW~~qfYY~FGFLFlvfiiLvvtcaei  537 (628)
T KOG1278|consen  458 FKKPAIEHPVRTNQIPRQIPEQPWYLNPIPSILIAGILPFGAIFIELFFILSSIWLNQFYYMFGFLFLVFIILVVTCAEI  537 (628)
T ss_pred             ccCCCCCCCcccCCCcccCCCCccccchhhHHHhhcccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999  4889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhhcccCCCCceeehhhhccchhHHHHHHHHHHhhhhhcccccccchhhHHHHHHHHHHHHHHHHhchHHHHHHHH
Q 006214          565 SVVLTYMHLCVEDWRWWWKAFFASGSVALYVFLYSINYLVFDLQSLSGPVSALLYLGYSLIMAVAIMLATGTIGFLTSFY  644 (656)
Q Consensus       565 sI~~~Y~~L~~Edy~WwWrSF~~~gs~~~y~flYsi~y~~~~~~~~~g~~~~~lyfgy~~l~s~~~~l~~GtiGflas~~  644 (656)
                      ||++||+|||+||||||||||++||++|+|+|+||++|+++|+ +++|++++++|||||++++++++|+||||||+||+|
T Consensus       538 sIvl~Yf~LC~Edy~WwWRsF~~sG~~avY~fiYsi~Y~~~kL-~i~g~~s~~LYfgYsli~~~~~~l~tGtIGF~a~~~  616 (628)
T KOG1278|consen  538 SIVLTYFQLCAEDYNWWWRSFLTSGSSAVYVFIYSIFYFFTKL-EISGFVSAVLYFGYSLIISLLFFLLTGTIGFLAAFW  616 (628)
T ss_pred             HHHHHHHHHHhcccceeeeeeeccCcchhhHHHHHHhhhheee-eecccchhHHHHHHHHHHHHHHHHHhccHHHHHHHH
Confidence            9999999999999999999999999999999999999999999 699999999999999999999999999999999999


Q ss_pred             HHHHHhhccCCC
Q 006214          645 FVHYLFSSVKID  656 (656)
Q Consensus       645 Fv~~IY~~iK~D  656 (656)
                      ||||||+++|+|
T Consensus       617 Fv~kIYssvKiD  628 (628)
T KOG1278|consen  617 FVRKIYSSVKID  628 (628)
T ss_pred             HHHHHhhheecC
Confidence            999999999998

>KOG1277 consensus Endosomal membrane proteins, EMP70 [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>PF02990 EMP70: Endomembrane protein 70; InterPro: IPR004240 The transmembrane 9 superfamily protein (TM9SF) may function as a channel or small molecule transporter	Back alignment and domain information

>PF12670 DUF3792: Protein of unknown function (DUF3792); InterPro: IPR023804 Members of this family of strongly hydrophobic putative transmembrane protein average about 125 amino acids in length and occur mostly, but not exclusively, in the Firmicutes	Back alignment and domain information

>PF11368 DUF3169: Protein of unknown function (DUF3169); InterPro: IPR021509 Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		656
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 42.5 bits (99), Expect = 4e-04
 Identities = 57/434 (13%), Positives = 111/434 (25%), Gaps = 145/434 (33%)

Query: 50  SIETELPFSYY--SLPYCKPLRGVKKSAENLGELLMGDQIDNSPYRFRINKNETLFLCIT 107
            ++ ++ F  +  +L  C     V +  + L   +  +    S +   I           
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI----------- 223

Query: 108 TPLSENEVK-----LLKQR--TRDLYQVNMILDNLPVMRYAKQNGVSIQWT--GFPVG-- 156
             L  + ++     LLK +     L    ++L N           V        F +   
Sbjct: 224 -KLRIHSIQAELRRLLKSKPYENCL----LVLLN-----------VQNAKAWNAFNLSCK 267

Query: 157 --YTPGNSN--DDYIINHLKFTVLVHEYKGSGVEIIGTGEEGMGVISEADDKKASGYEIV 212
              T       D           L H           T +E   ++ +            
Sbjct: 268 ILLTTRFKQVTDFLSAATTTHISLDHHSMTL------TPDEVKSLLLK------------ 309

Query: 213 GFEVVPCSVKYDPEVMTKLHMYDNITSVKCPSELDKSQIIRERERISFTYEVEFVKSNIR 272
               + C  +  P  +   +          P  L    II E  R               
Sbjct: 310 ---YLDCRPQDLPREVLTTN----------PRRLS---IIAESIRD-------------- 339

Query: 273 WPSRWDAYLKMEGARVHWFSILNSLMVI-------FFLAGIVFVIFLRTVR---RDLTRY 322
             + WD +  +   ++    I +SL V+        F       +F  +       L+  
Sbjct: 340 GLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDR---LSVFPPSAHIPTILLSLI 395

Query: 323 -EELDKEAQAQMNEELSGWKLVVGDVFRE----PD---------------HPKLL-CVMV 361
             ++ K     +  +L  + LV           P                H  ++    +
Sbjct: 396 WFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI 455

Query: 362 GDGVQITGMAIVTI---IFAALGF-MSPASRG--MLLTGMIFL-FLFLGIAAGYVAVRMW 414
                   +    +    ++ +G  +        M L  M+FL F FL            
Sbjct: 456 PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE----------- 504

Query: 415 RTIKGTSEGWRSVA 428
           + I+  S  W +  
Sbjct: 505 QKIRHDSTAWNASG 518

PyMOL of 1vt4

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00