Citrus Sinensis ID: 006219

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650------
Protein Sequence
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKRKRLSRLR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEcccccccccEEccccccccccEEcccccccccccccccccccccccccccccccccEEEEEEEccccccccccccccccccccccccccccccccccccEEEEEEEEEEEEccccEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccEEEEccccccccEEEEEccHHHHHHHHHHccccEEEEccccccccccccEEEEEEEcccccEEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccEEEEEEccHHHHHHHHHHHHcccEEEEHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccEEEEEEcccccEEEEcccccccccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHccccccccccccccHccEEEEEEcccccccEEEEEEcccHHHHEcccccccccccEEEEEcccccccccccccccccEEEEEEEEEccccccccccccEcccccccccccccccccccccccEEEEEEEHEEccccEEEEEEEccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccccHccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccccEEEEEEcHHHHHHHHHHccccEEEEEcccccccccEEEEEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccccEccEEEEcccHHHHHHHHHHcccccEEEEHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccEEEEEEcccccEEEcccHHHHcccHcHEEEEEHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccEEEEcccccccccccccccccccccccccccHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MDIVESLfdiqvqdppeedfssidltwtkfgtaehhdevalipyarvdsfiigecsnvecptrfhiergrkrsrgslkeykddeylEYRLYWcsfgpenygegggvlpsrkyrlntrnraarpqsmrgctchFVVKrlyarpslALLIYndrrhvnksgfichgpldrdaigpgakkiPYICNEIQQQTMSMIYlgipeesvLEKHIEGIQRycgsdakvnSLASQYVQKLGMIIRRstheldlddqasIRLWVDRNKKSIffyqdssetdpfilGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVtrssakpdVTKWMKSLLDRArsiepgwkisgfliddaaaeidpireifccpLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYsiwdgadpfvnLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMralplasqeASGAIEAYHVKLKtklfddshlgalqrvdwvssqkdsslthlvwnpgsefafcdcawsmqgnickHVVKVNMICannegyqpsmsFQSLREVLMNLwtkpmddsveLDLSVAWTHNMLDQIKQLVELsssddigavvnnlplkwvskkgrtsvgipsstlalpsssksstvhkknrkrkrlsrlr
Flexible Loop (DISEMBL)
MDIVESLFdiqvqdppeedFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGEcsnvecptrfhiergrkrsrgslkeykddeYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTrnraarpqsmrgctCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRStheldlddqasirLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWvvtrssakpdvtKWMKSLLDRArsiepgwkiSGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVkkctnikiqrEIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNlplkwvskkgrtsvgipsstlalpsssksstvhkknrkrkrlsrlr
Low Complexity Region (SEG)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIpsstlalpsssksstVHkknrkrkrlsrlr
Disordered region (IsUnstruct)
*******************FSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIER*********KEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRL***********MRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSK**************************************
Disordered Region (DISOPRED)
****ESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECP**********************EYLEYRLYWCSFGPEN***************************RGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMII*********DDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLV************************************************************
Disordered Region (DISEMBL)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSS***************************
Disordered Region (DISPRO)
*DIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPS***************SMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSV*IP*****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKSSTVHKKNRKRKRLSRLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	656
449461861	718	PREDICTED: uncharacterized protein LOC10	1.0	0.913	0.717	0.0
449507487	718	PREDICTED: uncharacterized LOC101204643	1.0	0.913	0.715	0.0
356567947	719	PREDICTED: uncharacterized protein LOC10	0.984	0.898	0.737	0.0
356554035	765	PREDICTED: uncharacterized protein LOC10	0.966	0.828	0.743	0.0
357515651	732	hypothetical protein MTR_8g043760 [Medic	1.0	0.896	0.695	0.0
357515623	792	hypothetical protein MTR_8g043530 [Medic	1.0	0.828	0.641	0.0
255555891	719	conserved hypothetical protein [Ricinus	0.783	0.714	0.848	0.0
224093406	744	predicted protein [Populus trichocarpa]	0.785	0.692	0.846	0.0
225431451	720	PREDICTED: uncharacterized protein LOC10	0.785	0.715	0.840	0.0
22330342	703	SWIM zinc finger-like protein [Arabidops	0.772	0.721	0.809	0.0

>gi|449461861|ref|XP_004148660.1| PREDICTED: uncharacterized protein LOC101204643 [Cucumis sativus]

 Score = 1097 bits (2836), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 515/718 (71%), Positives = 593/718 (82%), Gaps = 62/718 (8%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ D+QVQDPPEE+F S DLTWTKFGT EHHDEVALIPYARVD+FIIGEC+N+EC
Sbjct: 1   MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYARVDAFIIGECTNIEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRSRGSLKE+KDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSRGSLKEFKDDEYLEYRQYWCSFGPENYGEGGSILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVNKSGF+CHGP DR+AIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPFDREAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSM+YLGIPE +++EKH+E +QRYCGS+AK NSLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMLYLGIPEANIVEKHLECLQRYCGSNAKANSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDD+ASI +WV+RNKKSIF +QD+SE + FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 241 ELDLDDRASISMWVERNKKSIFIHQDTSEDNSFILGIQTEWQLQQMIRFGHRSLIAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGI+RLKYPLCTLLVFDSRQHALPVAW++TRS AK DV+KWMK+LLDRA+S+EPGWK+SG
Sbjct: 301 FGIRRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAQSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAA EIDPI +IFCCP+LFSLWR+RRSWL+N+V+KC++I++QREIFKRLG ++YSI
Sbjct: 361 FLIDDAATEIDPIMDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREIFKRLGKLVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           WDG D  V LE   +DFVDQTAF+EYFK  W+PK+ MWLS MRA PLASQEASGAIEAYH
Sbjct: 421 WDGVDASVVLEEFTRDFVDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWVSSQ----------------------------------- 505
           +KLK KLFDDSHLGA QRVDW+  +                                   
Sbjct: 481 MKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWH 540

Query: 506 -----KDSSLT-----HL---------------VWNPGSEFAFCDCAWSMQGNICKHVVK 540
                 DSS+T     HL               VWNPGSEF+FCDC+WSMQGN+CKHV+K
Sbjct: 541 RALQIPDSSVTLDDENHLFAKVLSQKDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIK 600

Query: 541 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 600
           VNM+C N   Y+PSMSFQS  E+LMN+W  PMDDSV LD+S+AWTH +LD++++LVEL+S
Sbjct: 601 VNMVCENCPSYKPSMSFQSFEEILMNMWKLPMDDSVALDVSMAWTHQILDEVQKLVELNS 660

Query: 601 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKS--STVHKKNRKRKRLSRLR 656
           S+DI +VVN LPLKW S KGRTS   PSST+  PS S +    + KKN+KRKRLS +R
Sbjct: 661 SNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVKKAMQKKNQKRKRLSSIR 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507487|ref|XP_004163046.1| PREDICTED: uncharacterized LOC101204643 [Cucumis sativus]

 Score = 1095 bits (2833), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 514/718 (71%), Positives = 593/718 (82%), Gaps = 62/718 (8%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ D+QVQDPPEE+F S DLTWTKFGT EHHDEVALIPYARVD+FIIGEC+N+EC
Sbjct: 1   MAIVESILDLQVQDPPEEEFYSADLTWTKFGTVEHHDEVALIPYARVDAFIIGECTNIEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRSRGSLKE+KDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSRGSLKEFKDDEYLEYRQYWCSFGPENYGEGGSILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVNKSGF+CHGP DR+AIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNKSGFVCHGPFDREAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSM+YLGIPE +++EKH+E +QRYCGS+AK NSLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMLYLGIPEANIVEKHLECLQRYCGSNAKANSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDD+ASI +WV+RNKKSIF +QD+SE + FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 241 ELDLDDRASISMWVERNKKSIFIHQDTSEDNSFILGIQTEWQLQQMIRFGHRSLIAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGI+RLKYPLCTLLVFDSRQHALPVAW++TRS AK DV+KWMK+LLDRA+S+EPGWK+SG
Sbjct: 301 FGIRRLKYPLCTLLVFDSRQHALPVAWIITRSFAKSDVSKWMKALLDRAQSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAA EIDPI +IFCCP+LFSLWR+RRSWL+N+V+KC++I++QREIFKRLG ++YSI
Sbjct: 361 FLIDDAATEIDPIMDIFCCPVLFSLWRIRRSWLKNVVRKCSSIEVQREIFKRLGKLVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           WDG D  V LE   +DFVDQTAF+EYFK  W+PK+ MWLS MRA PLASQEASGAIEAYH
Sbjct: 421 WDGVDASVVLEEFTRDFVDQTAFMEYFKGCWVPKIEMWLSAMRAFPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWVSSQ----------------------------------- 505
           +KLK KLFDDSHLGA QRVDW+  +                                   
Sbjct: 481 MKLKAKLFDDSHLGAFQRVDWLVHKLTTELHSTYWLDRYADESDSFQNVKEEYISSTSWH 540

Query: 506 -----KDSSLT-----HL---------------VWNPGSEFAFCDCAWSMQGNICKHVVK 540
                 DSS+T     HL               VWNPGSEF+FCDC+WSMQGN+CKHV+K
Sbjct: 541 RALQIPDSSVTLDNENHLFAKVLSQKDTSISHVVWNPGSEFSFCDCSWSMQGNLCKHVIK 600

Query: 541 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 600
           VNM+C N   Y+PSMSFQS  ++LMN+W  PMDDSV LD+S+AWTH +LD++++LVEL+S
Sbjct: 601 VNMVCENCPSYKPSMSFQSFEKILMNIWKLPMDDSVALDVSMAWTHQILDEVQKLVELNS 660

Query: 601 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPSSSKS--STVHKKNRKRKRLSRLR 656
           S+DI +VVN LPLKW S KGRTS   PSST+  PS S +    + KKN+KRKRLS +R
Sbjct: 661 SNDISSVVNKLPLKWASGKGRTSFRKPSSTIPFPSESNTVKKAMQKKNQKRKRLSSIR 718

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356567947|ref|XP_003552176.1| PREDICTED: uncharacterized protein LOC100776331 [Glycine max]

 Score = 1093 bits (2827), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/709 (73%), Positives = 594/709 (83%), Gaps = 63/709 (8%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+  I +QDPPEE+F + DLTWTKFG AEHHDEVALIPY RVD+FIIGEC+NVEC
Sbjct: 1   MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ G+LKEYKDDEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRTIGNLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYA+PSLAL++YN+RRH+NKSGFICHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGIQRYCGSDAKV+SLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+W++RN+KS+FF+QD+SE+DPFILGIQTEWQLQQMIRFGHRS++AADST
Sbjct: 241 ELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FG+KRLKYPL TLLVFDSRQHALPVAWV+TRS  KPDV+KW+K+L+DRARS+EPGWK+SG
Sbjct: 301 FGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID +R+IFCCP+LFSLWRVRRSWLRNIVKKC+NI+IQREIFKRLG I+Y+I
Sbjct: 361 FLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G +  + LE  + DFVDQTAF+EYFK  W+PKL MWLSTMR  PLASQEASGA+EAYH
Sbjct: 421 WGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASQEASGALEAYH 480

Query: 481 V-----------------------KLKTKLFDDSHLG----------------------- 494
           V                       KL T+L     L                        
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWH 540

Query: 495 -ALQRVDW-------------VSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 540
            ALQ  D+             V SQKDSSLTH+VWNPGSEFAFCDC+WSMQGN+CKHVVK
Sbjct: 541 RALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVK 600

Query: 541 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 600
           VNMIC N +GYQPSMSF+S +EVLM+LW KP+DDS  LDLS+AWTH MLDQI++ VEL++
Sbjct: 601 VNMICENLKGYQPSMSFRSFQEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNN 660

Query: 601 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALP---SSSKSSTVHKKN 646
           S DIG VVNN+PLKWVSKKGRT +G PSS+LALP   S++KS  V+KKN
Sbjct: 661 STDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALPHGSSNTKSVVVYKKN 709

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554035|ref|XP_003545355.1| PREDICTED: uncharacterized protein LOC100809744 [Glycine max]

 Score = 1082 bits (2798), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 516/694 (74%), Positives = 581/694 (83%), Gaps = 60/694 (8%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+  I +QDPPEE+F + DLTWTKFG AEHHDEVALIPY RVD+FIIGEC+NVEC
Sbjct: 1   MAIVESVGKIPLQDPPEEEFCAADLTWTKFGNAEHHDEVALIPYDRVDAFIIGECTNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ GSLKEYKDDEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRTIGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYA+PSLAL++YN+RRH+NKSGFICHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYAQPSLALIVYNERRHINKSGFICHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGIQRYCGSDAKV+SLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENILEKHIEGIQRYCGSDAKVSSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+W++RN+KS+FF+QD+SE+DPFILGIQTEWQLQQMIRFGHRS++AADST
Sbjct: 241 ELDLDDQASIRMWIERNRKSVFFHQDTSESDPFILGIQTEWQLQQMIRFGHRSVVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FG+KRLKYPL TLLVFDSRQHALPVAWV+TRS  KPDV+KW+K+L+DRARS+EPGWK+SG
Sbjct: 301 FGVKRLKYPLFTLLVFDSRQHALPVAWVITRSFTKPDVSKWLKALIDRARSVEPGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID +R+IFCCP+LFSLWRVRRSWLRNIVKKC+NI+IQREIFKRLG I+Y+I
Sbjct: 361 FLIDDAAAEIDLLRDIFCCPVLFSLWRVRRSWLRNIVKKCSNIEIQREIFKRLGRIVYNI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G +  + LE  + DFVDQTAF+EYFK  W+PKL MWLSTMR  PLAS EASGA+EAYH
Sbjct: 421 WGGINASLALEQFLLDFVDQTAFMEYFKVMWLPKLEMWLSTMRNFPLASLEASGALEAYH 480

Query: 481 V-----------------------KLKTKLFDDSHLG----------------------- 494
           V                       KL T+L     L                        
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRYADESDSFQNVKEKYIASTSWH 540

Query: 495 -ALQRVDW-------------VSSQKDSSLTHLVWNPGSEFAFCDCAWSMQGNICKHVVK 540
            ALQ  D+             V SQKDSSLTH+VWNPGSEFAFCDC+WSMQGN+CKHVVK
Sbjct: 541 RALQIPDYAVSLDDKDHLFAKVVSQKDSSLTHIVWNPGSEFAFCDCSWSMQGNLCKHVVK 600

Query: 541 VNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNMLDQIKQLVELSS 600
           VNMIC N +GYQPSMSF S  EVLM+LW KP+DDS  LDLS+AWTH MLDQI++ VEL++
Sbjct: 601 VNMICENLKGYQPSMSFWSFEEVLMDLWKKPVDDSFALDLSLAWTHQMLDQIQKQVELNN 660

Query: 601 SDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALP 634
           S DIG VVNN+PLKWVSKKGRT +G PSS+LALP
Sbjct: 661 STDIGTVVNNMPLKWVSKKGRTYIGKPSSSLALP 694

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515651|ref|XP_003628114.1| hypothetical protein MTR_8g043760 [Medicago truncatula] gi|355522136|gb|AET02590.1| hypothetical protein MTR_8g043760 [Medicago truncatula]

 Score = 1059 bits (2738), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 508/730 (69%), Positives = 594/730 (81%), Gaps = 74/730 (10%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ +I +QDP EE+FS+ DLTWTKFG+AEH+DEVALIPY RVD+FIIGECSNV C
Sbjct: 3   MAIVESVRNIPLQDPSEEEFSAADLTWTKFGSAEHYDEVALIPYDRVDAFIIGECSNVLC 62

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+ G+LKEYKDDEYLEYR YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 63  PTRFHIERGRKRTIGTLKEYKDDEYLEYRQYWCSFGPENYGEGGEILPSRRYRLNTRNRA 122

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVN SGFICHGPLDRDAIGPGAKKIPY
Sbjct: 123 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNTSGFICHGPLDRDAIGPGAKKIPY 182

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGI+RYCG +A+VNSLASQYV KLGMII+RSTH
Sbjct: 183 ICNEIQQQTMSMIYLGIPEENILEKHIEGIERYCGPNAQVNSLASQYVHKLGMIIKRSTH 242

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RN+KS+FF+QD+SE+DPFILGIQTEWQLQQM+RFGHRS++AADS+
Sbjct: 243 ELDLDDQASIRMWVERNRKSVFFHQDTSESDPFILGIQTEWQLQQMVRFGHRSIVAADSS 302

Query: 301 FGIKRLK-----------YPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRA 349
           FG+KRLK           YPL TLLVFDSRQHALPVAW++TRS AKPDV+KW+K+L+DRA
Sbjct: 303 FGVKRLKVIIFHSRLLSYYPLFTLLVFDSRQHALPVAWIITRSFAKPDVSKWLKALIDRA 362

Query: 350 RSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREI 409
           RS+EPGWK+SGFLIDDAAA+ID + +IF CP+LFSLWR+RRSWLRNIV+KC NI++QREI
Sbjct: 363 RSVEPGWKVSGFLIDDAAADIDLLSDIFDCPVLFSLWRIRRSWLRNIVRKCNNIEVQREI 422

Query: 410 FKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLAS 469
           FKRLG I+YSIW G +  + LE L+ DFVDQT F+EYF+ SW+PK+ MWLSTMR +PLAS
Sbjct: 423 FKRLGTIVYSIWGGTNTSLALEQLMLDFVDQTDFLEYFRVSWLPKIEMWLSTMRNVPLAS 482

Query: 470 QEASGAIEAYHVK-----------------------LKTKL---------------FDDS 491
           QEASGA+EAYHVK                       L T+L               F + 
Sbjct: 483 QEASGALEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRFADESDSFQNV 542

Query: 492 HLGALQRVDW----------------------VSSQKDSSLTHLVWNPGSEFAFCDCAWS 529
             G +    W                      V+S+KDSSLTH+VWNPGSEF+FCDC+WS
Sbjct: 543 KEGYIASTSWHRALEIPDSAVTLDDKNRLFAKVASKKDSSLTHIVWNPGSEFSFCDCSWS 602

Query: 530 MQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNML 589
           + GN+CKHV+KVNMIC N +G Q SMSF+S  EVLM+LW KP+DDS  LDLS+AWTH ML
Sbjct: 603 LHGNLCKHVIKVNMICENLQGCQSSMSFRSFEEVLMDLWRKPVDDSFALDLSLAWTHQML 662

Query: 590 DQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPS---SSKSSTVHKKN 646
           DQI++LVEL++S DIG VVNN+PLKWVSKK RT++G  SS  A PS   ++KS  V+KKN
Sbjct: 663 DQIQKLVELNNSTDIGTVVNNMPLKWVSKKRRTNIGKRSSISATPSGNRNTKSVVVYKKN 722

Query: 647 RKRKRLSRLR 656
           RKR+RLS+LR
Sbjct: 723 RKRRRLSQLR 732

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357515623|ref|XP_003628100.1| hypothetical protein MTR_8g043530 [Medicago truncatula] gi|355522122|gb|AET02576.1| hypothetical protein MTR_8g043530 [Medicago truncatula]

 Score = 1023 bits (2645), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 507/790 (64%), Positives = 593/790 (75%), Gaps = 134/790 (16%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M IVES+ +I +QDP EE+FS+ DLTWTKFG+AEH+DEVALIPY RVD+FIIGECSNV C
Sbjct: 3   MAIVESVRNIPLQDPSEEEFSAADLTWTKFGSAEHYDEVALIPYDRVDAFIIGECSNVLC 62

Query: 61  PTRFHIERGRKRSRGSLKEYKDDE---------YLEYR---------------------- 89
           PTRFHIERGRKR+ G+LKEYKDDE         YLE R                      
Sbjct: 63  PTRFHIERGRKRTIGTLKEYKDDEYLEYRQWFGYLERRHVGSLVSRVDQMGSSQITSGRG 122

Query: 90  -----------------------------LYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
                                         YWCSFGPENYGEGG +LPSR+YRLNTRNRA
Sbjct: 123 RPRKFIRETIKKDQEINGFDRDMIYDRTLWYWCSFGPENYGEGGEILPSRRYRLNTRNRA 182

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYN+RRHVN SGFICHGPLDRDAIGPGAKKIPY
Sbjct: 183 ARPQSMRGCTCHFVVKRLYARPSLALIIYNERRHVNTSGFICHGPLDRDAIGPGAKKIPY 242

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE++LEKHIEGI+RYCG +A+VNSLASQYV KLGMII+RSTH
Sbjct: 243 ICNEIQQQTMSMIYLGIPEENILEKHIEGIERYCGPNAQVNSLASQYVHKLGMIIKRSTH 302

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RN+KS+FF+QD+SE+DPFILGIQTEWQLQQM+RFGHRS++AADS+
Sbjct: 303 ELDLDDQASIRMWVERNRKSVFFHQDTSESDPFILGIQTEWQLQQMVRFGHRSIVAADSS 362

Query: 301 FGIKRLK-----------YPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRA 349
           FG+KRLK           YPL TLLVFDSRQHALPVAW++TRS AKPDV+KW+K+L+DRA
Sbjct: 363 FGVKRLKVIIFHSRLLSYYPLFTLLVFDSRQHALPVAWIITRSFAKPDVSKWLKALIDRA 422

Query: 350 RSIEPGWKISGFLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREI 409
           RS+EPGWK+SGFLIDDAAA+ID + +IF CP+LFSLWR+RRSWLRNIV+KC NI++QREI
Sbjct: 423 RSVEPGWKVSGFLIDDAAADIDLLSDIFDCPVLFSLWRIRRSWLRNIVRKCNNIEVQREI 482

Query: 410 FKRLGNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLAS 469
           FKRLG I+YSIW G +  + LE L+ DFVDQT F+EYF+ SW+PK+ MWLSTMR +PLAS
Sbjct: 483 FKRLGTIVYSIWGGTNTSLALEQLMLDFVDQTDFLEYFRVSWLPKIEMWLSTMRNVPLAS 542

Query: 470 QEASGAIEAYHVK-----------------------LKTKL---------------FDDS 491
           QEASGA+EAYHVK                       L T+L               F + 
Sbjct: 543 QEASGALEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYWLDRFADESDSFQNV 602

Query: 492 HLGALQRVDW----------------------VSSQKDSSLTHLVWNPGSEFAFCDCAWS 529
             G +    W                      V+S+KDSSLTH+VWNPGSEF+FCDC+WS
Sbjct: 603 KEGYIASTSWHRALEIPDSAVTLDDKNRLFAKVASKKDSSLTHIVWNPGSEFSFCDCSWS 662

Query: 530 MQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELDLSVAWTHNML 589
           + GN+CKHV+KVNMIC N +G Q SMSF+S  EVLM+LW KP+DDS  LDLS+AWTH ML
Sbjct: 663 LHGNLCKHVIKVNMICENLQGCQSSMSFRSFEEVLMDLWRKPVDDSFALDLSLAWTHQML 722

Query: 590 DQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLALPS---SSKSSTVHKKN 646
           DQI++LVEL++S DIG VVNN+PLKWVSKK RT++G  SS  A PS   ++KS  V+KKN
Sbjct: 723 DQIQKLVELNNSTDIGTVVNNMPLKWVSKKRRTNIGKRSSISATPSGNRNTKSVVVYKKN 782

Query: 647 RKRKRLSRLR 656
           RKR+RLS+LR
Sbjct: 783 RKRRRLSQLR 792

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555891|ref|XP_002518981.1| conserved hypothetical protein [Ricinus communis] gi|223541968|gb|EEF43514.1| conserved hypothetical protein [Ricinus communis]

 Score =  945 bits (2443), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 437/515 (84%), Positives = 474/515 (92%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDIVES+FDI VQ+PP+E+FSS DLTWTKFGTA+ HD+VALIPY RVD+FIIGECSNVEC
Sbjct: 1   MDIVESIFDIPVQNPPDEEFSSADLTWTKFGTADRHDDVALIPYDRVDTFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIER RKRSRGSLKEYK+DEYLEY+LYWCSFGPENYGEGG  LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERQRKRSRGSLKEYKNDEYLEYKLYWCSFGPENYGEGGDTLPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
            RPQSMRGCTCHFVVKRLY RPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 PRPQSMRGCTCHFVVKRLYTRPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYVQKLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVQKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQD+SE D FILGIQTEWQLQQMIRFGHRSL+AADST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDTSEADSFILGIQTEWQLQQMIRFGHRSLVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALP+AWV+TRS AKPDV KWMK+LLDRA S+EPGWKISG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPIAWVITRSFAKPDVAKWMKALLDRASSVEPGWKISG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEIDPIR+I+ CP+LFSLWR+RRSWLRNIVKKC NI++QREIFKRLG I+Y I
Sbjct: 361 FLIDDAAAEIDPIRDIYGCPVLFSLWRIRRSWLRNIVKKCNNIEVQREIFKRLGKIVYGI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W+G D    LE L  DFVDQT FI+YF ASW+PK+ MWLS MR LPLASQEASGAIEAYH
Sbjct: 421 WNGGDTLAALEELTTDFVDQTTFIQYFNASWVPKIDMWLSAMRTLPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
           VKLK KLFDDSHLGALQRVDW+  +  + L    W
Sbjct: 481 VKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYW 515

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093406|ref|XP_002309914.1| predicted protein [Populus trichocarpa] gi|222852817|gb|EEE90364.1| predicted protein [Populus trichocarpa]

 Score =  942 bits (2435), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/522 (84%), Positives = 476/522 (91%), Gaps = 7/522 (1%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDIVES+ ++ VQ+P EEDFS+ DLTWTKFGTAEHHDEVALIPY RVD+FIIGECSN EC
Sbjct: 18  MDIVESVLNLAVQNPAEEDFSAADLTWTKFGTAEHHDEVALIPYDRVDAFIIGECSNPEC 77

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKR+RG+LK+YK DEYLEY+LYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct: 78  PTRFHIERGRKRARGTLKDYKTDEYLEYKLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 137

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPS AL+IYN+RRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 138 ARPQSMRGCTCHFVVKRLYARPSQALIIYNERRHVNKSGFVCHGPLDRDAIGPGAKKIPY 197

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+ KVNSLASQYV KLGMII+RSTH
Sbjct: 198 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNPKVNSLASQYVHKLGMIIKRSTH 257

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDS E+D FILGIQTEWQLQQMIRFGHRSLIAADST
Sbjct: 258 ELDLDDQASIRMWVERNKKSIFFYQDSLESDAFILGIQTEWQLQQMIRFGHRSLIAADST 317

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRSSAKPDV KWMK+LL RA S+EPGWKISG
Sbjct: 318 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSSAKPDVAKWMKALLGRASSVEPGWKISG 377

Query: 361 FLIDDAAAEIDPIRE-------IFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRL 413
           FLIDDAAAEIDPIR+       IF CP+LFSLWRVRRSWLRNIVKKC NI++QREIFKRL
Sbjct: 378 FLIDDAAAEIDPIRQDIFAIQDIFGCPVLFSLWRVRRSWLRNIVKKCGNIEVQREIFKRL 437

Query: 414 GNILYSIWDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEAS 473
           G I+YSIW G D    LE L  D VDQTAFI+YFKASW+PK+ MWLSTMRALPLASQEAS
Sbjct: 438 GEIVYSIWGGVDTLSALEELTHDLVDQTAFIQYFKASWVPKIEMWLSTMRALPLASQEAS 497

Query: 474 GAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
           GAIEAYHVKLK KLFDDSHLGALQRVDW+  +  + L    W
Sbjct: 498 GAIEAYHVKLKAKLFDDSHLGALQRVDWLVHKLTTELHSSYW 539

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431451|ref|XP_002274170.1| PREDICTED: uncharacterized protein LOC100247174 [Vitis vinifera] gi|296088541|emb|CBI37532.3| unnamed protein product [Vitis vinifera]

 Score =  942 bits (2434), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 433/515 (84%), Positives = 476/515 (92%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           MDI+ES+ DI VQDP EE+FSS DL WTKFG  EHHD+VALIPYARVD+FIIGECSNVEC
Sbjct: 1   MDIIESILDIPVQDPKEEEFSSADLNWTKFGNPEHHDDVALIPYARVDAFIIGECSNVEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRS+GSLKEYK+DEYLEYRLYWCSFGPENYGEGGG+LPSR+YRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSKGSLKEYKNDEYLEYRLYWCSFGPENYGEGGGILPSRRYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLAL+IYNDRRHVNKSGF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALIIYNDRRHVNKSGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           IC+EIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGS+AKVNSLASQYV KLGMII+RSTH
Sbjct: 181 ICSEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSNAKVNSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASIR+WV+RNKKSIFFYQDSSE DPFILGIQTEWQLQQMIRFGHRS++A DST
Sbjct: 241 ELDLDDQASIRMWVERNKKSIFFYQDSSEADPFILGIQTEWQLQQMIRFGHRSIMAVDST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSRQHALPVAW++TRS AKPDV+KWMK+LLDRAR I+ GWK+SG
Sbjct: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWIITRSFAKPDVSKWMKALLDRARGIDIGWKVSG 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           FLIDDAAAEID IR++FCCP+LFSLWRVRRSWLRNI+KK +N+++QRE+FKRLG I+YSI
Sbjct: 361 FLIDDAAAEIDSIRDVFCCPVLFSLWRVRRSWLRNIIKKSSNVEVQREMFKRLGKIVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           W G D  V LE   QDFVDQT+FIEYFKA WMPK+ MW+  M+ LPLASQEASGAIEAYH
Sbjct: 421 WSGVDSLVALEEFTQDFVDQTSFIEYFKALWMPKIEMWIDMMKTLPLASQEASGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
           VKLK KL+DDSHLGALQRVDW+  +  + L    W
Sbjct: 481 VKLKVKLYDDSHLGALQRVDWLVHKLTTELHSSYW 515

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22330342|ref|NP_176256.2| SWIM zinc finger-like protein [Arabidopsis thaliana] gi|19715655|gb|AAL91647.1| At1g60560/F8A5_10 [Arabidopsis thaliana] gi|27363242|gb|AAO11540.1| At1g60560/F8A5_10 [Arabidopsis thaliana] gi|332195577|gb|AEE33698.1| SWIM zinc finger-like protein [Arabidopsis thaliana]

 Score =  908 bits (2346), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/515 (80%), Positives = 468/515 (90%)

Query: 1   MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
           M+IVESL +I VQ+P  EDFS  DLTWTKFGT+EHHD+VAL+PYARVD FIIGECSN EC
Sbjct: 1   MEIVESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAEC 60

Query: 61  PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
           PTRFHIERGRKRSRGSLKEYK DEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct: 61  PTRFHIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120

Query: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
           ARPQSMRGCTCHFVVKRLYARPSLALLIYN+RRHVNK+GF+CHGPLDRDAIGPGAKKIPY
Sbjct: 121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNERRHVNKAGFVCHGPLDRDAIGPGAKKIPY 180

Query: 181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
           ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGSDA V+SLASQYV KLGMII+RSTH
Sbjct: 181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTH 240

Query: 241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
           ELDLDDQASI++W +RNKKSIFFYQ+SSETD F+LGIQTEWQLQQ++RFGH SL+AADST
Sbjct: 241 ELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQLVRFGHCSLVAADST 300

Query: 301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
           FGIKRLKYPLCTLLVFDSR HALPVAW+++RS  K DV KWMK LL RA+S+EPG+KI+G
Sbjct: 301 FGIKRLKYPLCTLLVFDSRHHALPVAWIISRSYLKSDVEKWMKILLQRAQSVEPGFKING 360

Query: 361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
           F+IDDAA E DPIR+ FCCP+LFSLWRVRRSWLRN+VKKC +I++QR++FK LG ++YSI
Sbjct: 361 FIIDDAATETDPIRDTFCCPILFSLWRVRRSWLRNVVKKCDSIEVQRDLFKCLGELVYSI 420

Query: 421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
           WDG D    LE L QDFVDQTAF++YF ++W+PK+ MWLSTM++LPLASQEA GAIEAYH
Sbjct: 421 WDGVDTTKALEKLTQDFVDQTAFMQYFTSTWLPKIGMWLSTMKSLPLASQEACGAIEAYH 480

Query: 481 VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
           +KLK KLFDD+HLGALQRVDW+  +  + L    W
Sbjct: 481 IKLKVKLFDDTHLGALQRVDWLVHKLTTELHSSYW 515

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	656
TAIR|locus:2036541	703	AT1G60560 [Arabidopsis thalian	0.785	0.732	0.809	3.2e-283
TAIR|locus:2129271	778	AT4G13970 [Arabidopsis thalian	0.778	0.656	0.441	3.3e-147

TAIR|locus:2036541 AT1G60560 [Arabidopsis thaliana (taxid:3702)]

 Score = 2300 (814.7 bits), Expect = 3.2e-283, Sum P(2) = 3.2e-283
 Identities = 417/515 (80%), Positives = 468/515 (90%)

Query:     1 MDIVESLFDIQVQDPPEEDFSSIDLTWTKFGTAEHHDEVALIPYARVDSFIIGECSNVEC 60
             M+IVESL +I VQ+P  EDFS  DLTWTKFGT+EHHD+VAL+PYARVD FIIGECSN EC
Sbjct:     1 MEIVESLEEIPVQNPQVEDFSWADLTWTKFGTSEHHDQVALVPYARVDEFIIGECSNAEC 60

Query:    61 PTRFHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120
             PTRFHIERGRKRSRGSLKEYK DEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA
Sbjct:    61 PTRFHIERGRKRSRGSLKEYKSDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRA 120

Query:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPY 180
             ARPQSMRGCTCHFVVKRLYARPSLALLIYN+RRHVNK+GF+CHGPLDRDAIGPGAKKIPY
Sbjct:   121 ARPQSMRGCTCHFVVKRLYARPSLALLIYNERRHVNKAGFVCHGPLDRDAIGPGAKKIPY 180

Query:   181 ICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTH 240
             ICNEIQQQTMSMIYLGIPEE+VLEKHIEGIQRYCGSDA V+SLASQYV KLGMII+RSTH
Sbjct:   181 ICNEIQQQTMSMIYLGIPEENVLEKHIEGIQRYCGSDATVDSLASQYVHKLGMIIKRSTH 240

Query:   241 ELDLDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADST 300
             ELDLDDQASI++W +RNKKSIFFYQ+SSETD F+LGIQTEWQLQQ++RFGH SL+AADST
Sbjct:   241 ELDLDDQASIKIWAERNKKSIFFYQESSETDQFMLGIQTEWQLQQLVRFGHCSLVAADST 300

Query:   301 FGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISG 360
             FGIKRLKYPLCTLLVFDSR HALPVAW+++RS  K DV KWMK LL RA+S+EPG+KI+G
Sbjct:   301 FGIKRLKYPLCTLLVFDSRHHALPVAWIISRSYLKSDVEKWMKILLQRAQSVEPGFKING 360

Query:   361 FLIDDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSI 420
             F+IDDAA E DPIR+ FCCP+LFSLWRVRRSWLRN+VKKC +I++QR++FK LG ++YSI
Sbjct:   361 FIIDDAATETDPIRDTFCCPILFSLWRVRRSWLRNVVKKCDSIEVQRDLFKCLGELVYSI 420

Query:   421 WDGADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYH 480
             WDG D    LE L QDFVDQTAF++YF ++W+PK+ MWLSTM++LPLASQEA GAIEAYH
Sbjct:   421 WDGVDTTKALEKLTQDFVDQTAFMQYFTSTWLPKIGMWLSTMKSLPLASQEACGAIEAYH 480

Query:   481 VKLKTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
             +KLK KLFDD+HLGALQRVDW+  +  + L    W
Sbjct:   481 IKLKVKLFDDTHLGALQRVDWLVHKLTTELHSSYW 515

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2129271 AT4G13970 [Arabidopsis thaliana (taxid:3702)]

 Score = 1272 (452.8 bits), Expect = 3.3e-147, Sum P(2) = 3.3e-147
 Identities = 226/512 (44%), Positives = 339/512 (66%)

Query:     5 ESLFDIQVQDPPEEDFSSIDLTWTKF-GTAEHHDEVALIPYARVDSFIIGECSNVECPTR 63
             + +F + VQ+P   +FSS DL W+K  G  ++ D +ALIPY RVD F+ GECSN +CPT 
Sbjct:     5 DQIFSLPVQNPTLPEFSSTDLVWSKVEGYRDNIDRLALIPYTRVDDFVRGECSNKDCPTS 64

Query:    64 FHIERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARP 123
             FH+E  R++++G   + K D  LEY LYWCSFGP++  +GG V PSR   +  +N A RP
Sbjct:    65 FHVEARRRKAKGKKYKPKVDGILEYILYWCSFGPDDNRKGGTVRPSRSTYVPKKNNAGRP 124

Query:   124 QSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICN 183
              S RGC CHF+VKRL A P++AL+IYN+ +HV++ GF CHGP D+ A G  A   PYI  
Sbjct:   125 NSKRGCRCHFIVKRLIAEPTVALVIYNNDKHVDEKGFPCHGPQDKKAAGTRAMFAPYISE 184

Query:   184 EIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELD 243
             +++ +  S++Y+G+  E+++++H E +++  G   + + L  +YV++L   IRRST+ELD
Sbjct:   185 DLRLRVSSLLYVGVSVETIMQRHNESVEKQGGPSNRDDLLTHRYVRRLERSIRRSTYELD 244

Query:   244 LDDQASIRLWVDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGI 303
              DD  SI +WV+ ++  +FF++  S+TDPF LGIQTEWQLQQMIRFG+  L+A+DS FG 
Sbjct:   245 EDDDVSISMWVESHQSHVFFFEGFSDTDPFSLGIQTEWQLQQMIRFGNCRLLASDSRFGT 304

Query:   304 KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLI 363
               LKYP+ +L+VFDS   A+PVAW++    +  D  +WM++L +R  + +P WK++GF++
Sbjct:   305 NTLKYPIHSLVVFDSENKAIPVAWIIAPRFSSGDAYRWMRALCNRVHAKDPSWKVAGFIV 364

Query:   364 DDAAAEIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDG 423
             DD  A+I  IR++F CP+LFS WR+R +W +NI+K+C   K + EI + LG  +  I   
Sbjct:   365 DDPFADIIAIRDVFQCPVLFSFWRLRHAWHKNIIKRCRETKTRVEISRHLGQAVDKISRR 424

Query:   424 ADPFVNLEVLIQDFVDQTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKL 483
                    +  ++DFV    F+EYF++ W P++  W S +++LPLASQE   A+E YH +L
Sbjct:   425 QGTATLFDSFVEDFVGSPEFVEYFRSVWSPRIGAWTSALQSLPLASQETCAAMELYHYQL 484

Query:   484 KTKLFDDSHLGALQRVDWVSSQKDSSLTHLVW 515
             K +L ++    A QR DW+  +  + +    W
Sbjct:   485 KCRLLNERDSEAYQRADWLVDKLGTKVHSYFW 516

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	656
pfam04434	38	pfam04434, SWIM, SWIM zinc finger	0.003

>gnl|CDD|218087 pfam04434, SWIM, SWIM zinc finger

 Score = 35.5 bits (82), Expect = 0.003
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 1/29 (3%)

Query: 514 VWNPGSEFAFCDC-AWSMQGNICKHVVKV 541
           +       A C C A+ + G  CKH + V
Sbjct: 5   LDLDDLVKASCSCPAFQLYGIPCKHALAV 33

This domain is found in bacterial, archaeal and eukaryotic proteins. It is predicted to be organised into two N-terminal beta-strands and a C-terminal alpha helix, thus possibly adopting a fold similar to that of the C2H2 zinc finger (pfam00096). SWIM is thought to be a versatile domain that can interact with DNA or proteins in different contexts. Length = 38

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	656
PLN03097	846	FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provis	100.0
PF10551	93	MULE: MULE transposase domain; InterPro: IPR018289	99.73
PF00872	381	Transposase_mut: Transposase, Mutator family; Inte	99.29
COG3328	379	Transposase and inactivated derivatives [DNA repli	98.1
smart00575	28	ZnF_PMZ plant mutator transposase zinc finger.	97.5
PF03101	91	FAR1: FAR1 DNA-binding domain; InterPro: IPR004330	97.44
PF04434	40	SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc f	97.29
PF15299	225	ALS2CR8: Amyotrophic lateral sclerosis 2 chromosom	96.54
PF01610	249	DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Aut	94.96
PF06782	470	UPF0236: Uncharacterised protein family (UPF0236);	90.97
PF03050	271	DDE_Tnp_IS66: Transposase IS66 family ; InterPro:	89.05
COG4279	266	Uncharacterized conserved protein [Function unknow	88.07
PF13610	140	DDE_Tnp_IS240: DDE domain	87.61
PF00665	120	rve: Integrase core domain; InterPro: IPR001584 In	83.82
PF08731	111	AFT: Transcription factor AFT; InterPro: IPR014842	81.08
PF03106	60	WRKY: WRKY DNA -binding domain; InterPro: IPR00365	80.27

>PLN03097 FHY3 Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional

Probab=100.00  E-value=3.5e-45  Score=424.05  Aligned_cols=428  Identities=15%  Similarity=0.204  Sum_probs=305.0

Q ss_pred             cccccCCCCCCccccccceeEEEEEEeecCCC----cc-----------------CCCCcc-------ccccc--ccccc
Q 006219           67 ERGRKRSRGSLKEYKDDEYLEYRLYWCSFGPE----NY-----------------GEGGGV-------LPSRK--YRLNT  116 (656)
Q Consensus        67 ~~~~~~~~g~~~~~~~d~~~~y~~Y~Cs~Gp~----~~-----------------~~~~~~-------~p~~~--~~~~~  116 (656)
                      ...-.|-+||.|++.+++|-||+.|+...|=.    ..                 ++|.+.       +|...  ...++
T Consensus        69 ~~~~~P~vGMeF~S~eeA~~FYn~YA~~~GFsVRi~~srrsk~~~~ii~r~fvCsreG~~~~~~~~~~~~~~~~~k~~~~  148 (846)
T PLN03097         69 DTNLEPLSGMEFESHGEAYSFYQEYARSMGFNTAIQNSRRSKTSREFIDAKFACSRYGTKREYDKSFNRPRARQTKQDPE  148 (846)
T ss_pred             CCCccCcCCCeECCHHHHHHHHHHHHhhcCceEEeeceeccCCCCcEEEEEEEEcCCCCCcccccccccccccccccCcc
Confidence            34457999999999999999999988887711    11                 111110       00000  00001


Q ss_pred             CcCCCCCCcccCceeEEEEEEeecCCcEEEEEEecccccCCCCCccCCCCCcCcCCCCCCcCCCCCHHHHHHHHHHHHcC
Q 006219          117 RNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRRHVNKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLG  196 (656)
Q Consensus       117 ~~r~~r~~tk~GC~c~~~Vkr~~~~~~v~v~i~~~~~H~~~~~~~~H~p~~~~~~~~~~~~~~rIs~e~r~~I~~ll~~G  196 (656)
                      ..+++|..+++||+|+++|++. .++.|.|.-+. .+|+|.-.     |.            ..++...+          
T Consensus       149 ~~~~rR~~tRtGC~A~m~Vk~~-~~gkW~V~~fv-~eHNH~L~-----p~------------~~~~~~~r----------  199 (846)
T PLN03097        149 NGTGRRSCAKTDCKASMHVKRR-PDGKWVIHSFV-KEHNHELL-----PA------------QAVSEQTR----------  199 (846)
T ss_pred             cccccccccCCCCceEEEEEEc-CCCeEEEEEEe-cCCCCCCC-----Cc------------cccchhhh----------
Confidence            1112355688999999999984 45677777666 34765221     10            01222222          


Q ss_pred             CChHHHHHHHHHhhhhccCCCCccCCCcHHHHHHHHHHHhhccccCCcchHHHHHHHHHhcC--CeeEEecCCCCCCC-e
Q 006219          197 IPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNK--KSIFFYQDSSETDP-F  273 (656)
Q Consensus       197 i~p~~Il~~ire~~~~~~g~~~r~~llT~kDV~Ni~~~~~~~~~~l~~~D~~Sv~~wv~~~~--~~vf~y~d~~d~~~-F  273 (656)
                          .|+..+...+   + ..... ..+.+|.+|.....+.  ..+..+|+..+..++++++  +|-|||.-..|+++ .
T Consensus       200 ----~~~~~~~~~~---~-~~~~v-~~~~~d~~~~~~~~r~--~~~~~gD~~~ll~yf~~~q~~nP~Ffy~~qlDe~~~l  268 (846)
T PLN03097        200 ----KMYAAMARQF---A-EYKNV-VGLKNDSKSSFDKGRN--LGLEAGDTKILLDFFTQMQNMNSNFFYAVDLGEDQRL  268 (846)
T ss_pred             ----hhHHHHHhhh---h-ccccc-cccchhhcchhhHHHh--hhcccchHHHHHHHHHHHHhhCCCceEEEEEccCCCe
Confidence                1221111111   1 11111 2355677776655543  2456789999999999885  89999985554444 4


Q ss_pred             EeecCcHHH-HHHHHHhCCCeEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhcc
Q 006219          274 ILGIQTEWQ-LQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSI  352 (656)
Q Consensus       274 ~l~iqt~~Q-~~~l~~fg~~~vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~  352 (656)
                      .-+++.+.. +..+..||+  ||++|+||.||+|++||..++|+|+|++.+++|++|+.+|+.++|.|+|++|+++|+.+
T Consensus       269 ~niFWaD~~sr~~Y~~FGD--vV~fDTTY~tN~y~~Pfa~FvGvNhH~qtvlfGcaLl~dEt~eSf~WLf~tfl~aM~gk  346 (846)
T PLN03097        269 KNLFWVDAKSRHDYGNFSD--VVSFDTTYVRNKYKMPLALFVGVNQHYQFMLLGCALISDESAATYSWLMQTWLRAMGGQ  346 (846)
T ss_pred             eeEEeccHHHHHHHHhcCC--EEEEeceeeccccCcEEEEEEEecCCCCeEEEEEEEcccCchhhHHHHHHHHHHHhCCC
Confidence            444666664 556788998  99999999999999999999999999999999999999999999999999999999764


Q ss_pred             CCCcceEEEEEcCchhhhhHHHHhcCCC-cccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHhhhcCCCChHHHHH
Q 006219          353 EPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNILYSIWDGADPFVNLE  431 (656)
Q Consensus       353 ~p~~~P~~fmtD~d~A~~~AI~~VFp~~-~LLC~wHV~qaw~k~l~~k~~~~e~~~~i~k~L~~ll~~~~~~~~f~~~le  431 (656)
                          .|++|+||+|.|+.+||.+|||.+ |.+|.|||.++..++|...+.   ....+...+..+|+....+++|+..|.
T Consensus       347 ----~P~tIiTDqd~am~~AI~~VfP~t~Hr~C~wHI~~~~~e~L~~~~~---~~~~f~~~f~~cv~~s~t~eEFE~~W~  419 (846)
T PLN03097        347 ----APKVIITDQDKAMKSVISEVFPNAHHCFFLWHILGKVSENLGQVIK---QHENFMAKFEKCIYRSWTEEEFGKRWW  419 (846)
T ss_pred             ----CCceEEecCCHHHHHHHHHHCCCceehhhHHHHHHHHHHHhhHHhh---hhhHHHHHHHHHHhCCCCHHHHHHHHH
Confidence                689999999999999999999997 999999999998888855332   234567778888888877778888888


Q ss_pred             HHHHHhhc-hhHHHHHHHhhccchHHHHHHhh-hcCCCCCCCcChHHHHhHHhhhhhhcccCcc--chhhhHhhh-----
Q 006219          432 VLIQDFVD-QTAFIEYFKASWMPKLAMWLSTM-RALPLASQEASGAIEAYHVKLKTKLFDDSHL--GALQRVDWV-----  502 (656)
Q Consensus       432 ~~~~~~~d-~~~F~~Yf~~~Wl~~~e~Wa~~~-R~lp~~~~~TNn~iES~h~~LK~~ll~~~~~--~~~~RvD~L-----  502 (656)
                      +++.+|.- ..   +|++..| ..+++||.+| +....+++.||++.||+|+.||.+ ++....  .++.++|.+     
T Consensus       420 ~mi~ky~L~~n---~WL~~LY-~~RekWapaY~k~~F~agm~sTqRSES~Ns~fk~y-v~~~tsL~~Fv~qye~~l~~~~  494 (846)
T PLN03097        420 KILDRFELKED---EWMQSLY-EDRKQWVPTYMRDAFLAGMSTVQRSESINAFFDKY-VHKKTTVQEFVKQYETILQDRY  494 (846)
T ss_pred             HHHHhhccccc---HHHHHHH-HhHhhhhHHHhcccccCCcccccccccHHHHHHHH-hCcCCCHHHHHHHHHHHHHHHH
Confidence            88888742 22   4566666 4568999998 555678999999999999999984 444432  255555544     


Q ss_pred             --------------------------------------------------hh---cc------------CCCceEEEecC
Q 006219          503 --------------------------------------------------SS---QK------------DSSLTHLVWNP  517 (656)
Q Consensus       503 --------------------------------------------------~~---q~------------d~~~~~vv~n~  517 (656)
                                                                        ..   +.            ....+.|++|+
T Consensus       495 ekE~~aD~~s~~~~P~l~t~~piEkQAs~iYT~~iF~kFQ~El~~~~~~~~~~~~~dg~~~~y~V~~~~~~~~~~V~~d~  574 (846)
T PLN03097        495 EEEAKADSDTWNKQPALKSPSPLEKSVSGVYTHAVFKKFQVEVLGAVACHPKMESQDETSITFRVQDFEKNQDFTVTWNQ  574 (846)
T ss_pred             HHHHHhhhhcccCCcccccccHHHHHHHHHhHHHHHHHHHHHHHHhhheEEeeeccCCceEEEEEEEecCCCcEEEEEec
Confidence                                                              00   00            11245677899


Q ss_pred             CCceeeeecc-CCCCCccchhHHHHHHHhccC
Q 006219          518 GSEFAFCDCA-WSMQGNICKHVVKVNMICANN  548 (656)
Q Consensus       518 ~~~~~~CsC~-~~~~G~~CkH~~kV~~~~~~~  548 (656)
                      ..+...|+|. |+..|+||.|+++|+.+.+..
T Consensus       575 ~~~~v~CsC~kFE~~GILCrHaLkVL~~~~v~  606 (846)
T PLN03097        575 TKLEVSCICRLFEYKGYLCRHALVVLQMCQLS  606 (846)
T ss_pred             CCCeEEeeccCeecCccchhhHHHHHhhcCcc
Confidence            8999999996 999999999999999888653

>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]

Probab=99.73  E-value=8e-18  Score=146.97  Aligned_cols=89  Identities=19%  Similarity=0.267  Sum_probs=81.6

Q ss_pred             ccccccccCCceEE---EEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhHHHH
Q 006219          299 STFGIKRLKYPLCT---LLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIRE  375 (656)
Q Consensus       299 sT~~tnky~~pL~t---l~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~AI~~  375 (656)
                      +||+||+| ++|++   +++.|+.|+++|+||+++++|+.+++.|+|+.+++.+..    . |.+||+|.+.++++||++
T Consensus         1 ~T~~tn~~-~~l~~~~~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~~~~----~-p~~ii~D~~~~~~~Ai~~   74 (93)
T PF10551_consen    1 GTYKTNKY-GPLLYLMIAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEAMPQ----K-PKVIISDFDKALINAIKE   74 (93)
T ss_pred             Cccccccc-cccceeceEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhcccc----C-ceeeeccccHHHHHHHHH
Confidence            69999999 87775   999999999999999999999999999999988777643    4 999999999999999999


Q ss_pred             hcCCC-cccchHHHHHHHH
Q 006219          376 IFCCP-LLFSLWRVRRSWL  393 (656)
Q Consensus       376 VFp~~-~LLC~wHV~qaw~  393 (656)
                      +||.. +++|.||+.|+|+
T Consensus        75 vfP~~~~~~C~~H~~~n~k   93 (93)
T PF10551_consen   75 VFPDARHQLCLFHILRNIK   93 (93)
T ss_pred             HCCCceEehhHHHHHHhhC
Confidence            99997 9999999999873

This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].

>PF00872 Transposase_mut: Transposase, Mutator family; InterPro: IPR001207 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=99.29  E-value=5.7e-13  Score=145.76  Aligned_cols=244  Identities=16%  Similarity=0.211  Sum_probs=174.1

Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccCCCCccCCCcHHHHHHHHHHHhhccccCCcchHHHHHHHHHhcCC
Q 006219          180 YICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKK  259 (656)
Q Consensus       180 rIs~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g~~~r~~llT~kDV~Ni~~~~~~~~~~l~~~D~~Sv~~wv~~~~~  259 (656)
                      +.++++-+.|.+|-..|++..+|-+.+.+    .+|+.    -++..-|.++...+.           ..+..|-.+-  
T Consensus        98 r~~~~l~~~i~~ly~~G~Str~i~~~l~~----l~g~~----~~S~s~vSri~~~~~-----------~~~~~w~~R~--  156 (381)
T PF00872_consen   98 RREDSLEELIISLYLKGVSTRDIEEALEE----LYGEV----AVSKSTVSRITKQLD-----------EEVEAWRNRP--  156 (381)
T ss_pred             hhhhhhhhhhhhhhccccccccccchhhh----hhccc----ccCchhhhhhhhhhh-----------hhHHHHhhhc--
Confidence            35677888999999999999988654422    24421    256666666654443           2345554332  


Q ss_pred             eeEEecCCCCCCCeEeecCcHHHHHHHHHhCCCeEEEEeccccccc-----cCCceEEEEEEcCCCCeEEEEEEEecCCC
Q 006219          260 SIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKR-----LKYPLCTLLVFDSRQHALPVAWVVTRSSA  334 (656)
Q Consensus       260 ~vf~y~d~~d~~~F~l~iqt~~Q~~~l~~fg~~~vv~iDsT~~tnk-----y~~pL~tl~v~d~~g~~~PvA~~i~~~et  334 (656)
                                                |.... -.+|++|+||-.-+     -+-.+++++|+|..|.-.++|+.+..+|+
T Consensus       157 --------------------------L~~~~-y~~l~iD~~~~kvr~~~~~~~~~~~v~iGi~~dG~r~vLg~~~~~~Es  209 (381)
T PF00872_consen  157 --------------------------LESEP-YPYLWIDGTYFKVREDGRVVKKAVYVAIGIDEDGRREVLGFWVGDRES  209 (381)
T ss_pred             --------------------------ccccc-ccceeeeeeecccccccccccchhhhhhhhhcccccceeeeecccCCc
Confidence                                      11110 01689999986543     34678999999999999999999999999


Q ss_pred             hhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhHHHHhcCCC-cccchHHHHHHHHHHHHhhcCChHHHHHHHHHH
Q 006219          335 KPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRL  413 (656)
Q Consensus       335 ~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~AI~~VFp~~-~LLC~wHV~qaw~k~l~~k~~~~e~~~~i~k~L  413 (656)
                      ...+..+|..|.++=     --.|..|++|...+..+||+++||.+ +..|.+|..++..+++.+     ..+.++...|
T Consensus       210 ~~~W~~~l~~L~~RG-----l~~~~lvv~Dg~~gl~~ai~~~fp~a~~QrC~vH~~RNv~~~v~~-----k~~~~v~~~L  279 (381)
T PF00872_consen  210 AASWREFLQDLKERG-----LKDILLVVSDGHKGLKEAIREVFPGAKWQRCVVHLMRNVLRKVPK-----KDRKEVKADL  279 (381)
T ss_pred             cCEeeecchhhhhcc-----ccccceeeccccccccccccccccchhhhhheechhhhhcccccc-----ccchhhhhhc
Confidence            998877777775541     12488999999999999999999986 999999999876655532     3456677777


Q ss_pred             HHHHhhhcCCCChHHHHHHHHHHhhc-hhHHHHHHHhhccchHHHHHHhhhcCCC---CCCCcChHHHHhHHhhhhhh
Q 006219          414 GNILYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKASWMPKLAMWLSTMRALPL---ASQEASGAIEAYHVKLKTKL  487 (656)
Q Consensus       414 ~~ll~~~~~~~~f~~~le~~~~~~~d-~~~F~~Yf~~~Wl~~~e~Wa~~~R~lp~---~~~~TNn~iES~h~~LK~~l  487 (656)
                      ..+.+.. +.+++...+++|...|.+ .+.+.++++..|...   |+  |-.+|-   ....|||.+|++|+.||+..
T Consensus       280 k~I~~a~-~~e~a~~~l~~f~~~~~~kyp~~~~~l~~~~~~~---~t--f~~fP~~~~~~i~TTN~iEsln~~irrr~  351 (381)
T PF00872_consen  280 KAIYQAP-DKEEAREALEEFAEKWEKKYPKAAKSLEENWDEL---LT--FLDFPPEHRRSIRTTNAIESLNKEIRRRT  351 (381)
T ss_pred             ccccccc-ccchhhhhhhhcccccccccchhhhhhhhccccc---cc--eeeecchhccccchhhhccccccchhhhc
Confidence            7765544 335567778888777764 688999999888533   22  112332   24689999999999999853

Transposases have been grouped into various families [, , ]. The mutator family of transposases consists of a number of elements that include, mutator from maize, IsT2 from Thiobacillus ferrooxidans, Is256 from Staphylococcus aureus, Is1201 from Lactobacillus helveticus, Is1081 from Mycobacterium bovis, IsRm3 from Rhizobium meliloti and others. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>COG3328 Transposase and inactivated derivatives [DNA replication, recombination, and repair]

Probab=98.10  E-value=0.00014  Score=79.42  Aligned_cols=239  Identities=13%  Similarity=0.176  Sum_probs=147.8

Q ss_pred             CCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccCCCCccCCCcHHHHHHHHHHHhhccccCCcchHHHHHHHHHhcCC
Q 006219          180 YICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRNKK  259 (656)
Q Consensus       180 rIs~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g~~~r~~llT~kDV~Ni~~~~~~~~~~l~~~D~~Sv~~wv~~~~~  259 (656)
                      +.....-+.|.+|-..||+..+|=+.+ +.+   ++.     .+..--|..+...+.           ..|.+|..+-  
T Consensus        84 r~~~~~~~~v~~~y~~gv~Tr~i~~~~-~~~---~~~-----~~s~~~iS~~~~~~~-----------e~v~~~~~r~--  141 (379)
T COG3328          84 RRERALDLPVLSMYAKGVTTREIEALL-EEL---YGH-----KVSPSVISVVTDRLD-----------EKVKAWQNRP--  141 (379)
T ss_pred             hhhhhHHHHHHHHHHcCCcHHHHHHHH-HHh---hCc-----ccCHHHhhhHHHHHH-----------HHHHHHHhcc--
Confidence            344556688999999999998874333 222   322     123323333333222           2344443321  


Q ss_pred             eeEEecCCCCCCCeEeecCcHHHHHHHHHhCCCeEEEEeccccccc--cCCceEEEEEEcCCCCeEEEEEEEecCCChhh
Q 006219          260 SIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKR--LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPD  337 (656)
Q Consensus       260 ~vf~y~d~~d~~~F~l~iqt~~Q~~~l~~fg~~~vv~iDsT~~tnk--y~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~  337 (656)
                                                +   |+..++++|++|.--+  -+-.++..+|++..|.--.+++.+...|+ .-
T Consensus       142 --------------------------l---~~~~~v~~D~~~~k~r~v~~~~~~ia~Gv~~eG~reilg~~~~~~e~-~~  191 (379)
T COG3328         142 --------------------------L---GDYPYVYLDAKYVKVRSVRNKAVYIAIGVTEEGRREILGIWVGVRES-KF  191 (379)
T ss_pred             --------------------------c---cCceEEEEecceeehhhhhhheeeeeeccCcccchhhhceeeecccc-hh
Confidence                                      2   3334799999997666  44688999999999999999999999999 66


Q ss_pred             HHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhHHHHhcCCC-cccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHH
Q 006219          338 VTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFKRLGNI  416 (656)
Q Consensus       338 ~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~AI~~VFp~~-~LLC~wHV~qaw~k~l~~k~~~~e~~~~i~k~L~~l  416 (656)
                      +..||..|..+--.     ....+++|.-...-+||.++||.. +..|..|+.++......     .+.+..+...+..+
T Consensus       192 w~~~l~~l~~rgl~-----~v~l~v~Dg~~gl~~aI~~v~p~a~~Q~C~vH~~Rnll~~v~-----~k~~d~i~~~~~~I  261 (379)
T COG3328         192 WLSFLLDLKNRGLS-----DVLLVVVDGLKGLPEAISAVFPQAAVQRCIVHLVRNLLDKVP-----RKDQDAVLSDLRSI  261 (379)
T ss_pred             HHHHHHHHHhcccc-----ceeEEecchhhhhHHHHHHhccHhhhhhhhhHHHhhhhhhhh-----hhhhHHHHhhhhhh
Confidence            66666666654211     244567799999999999999986 99999999976544442     23455555555444


Q ss_pred             HhhhcCCCChHHHHHHHHHHhhc-hhHHHHHHHhhccchHHHHHHhhhcCCCC---CCCcChHHHHhHHhhhhh
Q 006219          417 LYSIWDGADPFVNLEVLIQDFVD-QTAFIEYFKASWMPKLAMWLSTMRALPLA---SQEASGAIEAYHVKLKTK  486 (656)
Q Consensus       417 l~~~~~~~~f~~~le~~~~~~~d-~~~F~~Yf~~~Wl~~~e~Wa~~~R~lp~~---~~~TNn~iES~h~~LK~~  486 (656)
                      .-.. +..+....+.++...|.. .+....-..+.|..   .|.  |-.+|-.   ...|||.+|++|..++..
T Consensus       262 ~~a~-~~e~~~~~~~~~~~~w~~~yP~i~~~~~~~~~~---~~~--F~~fp~~~r~~i~ttN~IE~~n~~ir~~  329 (379)
T COG3328         262 YIAP-DAEEALLALLAFSELWGKRYPAILKSWRNALEE---LLP--FFAFPSEIRKIIYTTNAIESLNKLIRRR  329 (379)
T ss_pred             hccC-CcHHHHHHHHHHHHhhhhhcchHHHHHHHHHHH---hcc--cccCcHHHHhHhhcchHHHHHHHHHHHH
Confidence            3222 222344455555554442 33333333333321   111  1123431   368999999999988754

>smart00575 ZnF_PMZ plant mutator transposase zinc finger

Probab=97.50  E-value=5.8e-05  Score=51.57  Aligned_cols=25  Identities=20%  Similarity=0.626  Sum_probs=22.1

Q ss_pred             eeecc-CCCCCccchhHHHHHHHhcc
Q 006219          523 FCDCA-WSMQGNICKHVVKVNMICAN  547 (656)
Q Consensus       523 ~CsC~-~~~~G~~CkH~~kV~~~~~~  547 (656)
                      .|+|. |+..|+||+|+++|+...+.
T Consensus         2 ~CsC~~~~~~gipC~H~i~v~~~~~~   27 (28)
T smart00575        2 TCSCRKFQLSGIPCRHALAAAIHIGL   27 (28)
T ss_pred             cccCCCcccCCccHHHHHHHHHHhCC
Confidence            69995 99999999999999987653

>PF03101 FAR1: FAR1 DNA-binding domain; InterPro: IPR004330 Phytochrome A is the primary photoreceptor for mediating various far-red light-induced responses in higher plants

Probab=97.44  E-value=0.00026  Score=61.47  Aligned_cols=72  Identities=22%  Similarity=0.366  Sum_probs=48.7

Q ss_pred             CCCCccccccceeEEEEEEeecCCCccCCCCccccccccccccCcCCCCCCcccCceeEEEEEEeecCCcEEEEEEeccc
Q 006219           74 RGSLKEYKDDEYLEYRLYWCSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALLIYNDRR  153 (656)
Q Consensus        74 ~g~~~~~~~d~~~~y~~Y~Cs~Gp~~~~~~~~~~p~~~~~~~~~~r~~r~~tk~GC~c~~~Vkr~~~~~~v~v~i~~~~~  153 (656)
                      .+...+.+.++.+.+..|.|+.       +|..++..+.  ..+++..+++.++||+|+|.|++.. ++.|.|..+. .+
T Consensus        16 ~~~s~~~~~~~~~~~~~~~C~r-------~G~~~~~~~~--~~~~~r~~~s~ktgC~a~i~v~~~~-~~~w~v~~~~-~~   84 (91)
T PF03101_consen   16 KSSSRKSKKNGEIKRVTFVCSR-------GGKYKSKKKN--EEKRRRNRPSKKTGCKARINVKRRK-DGKWRVTSFV-LE   84 (91)
T ss_pred             EeeeEeCCCCceEEEEEEEECC-------cccccccccc--cccccccccccccCCCEEEEEEEcc-CCEEEEEECc-CC
Confidence            3455566789999999999995       3322221111  1223446788899999999999875 7777776666 34


Q ss_pred             ccC
Q 006219          154 HVN  156 (656)
Q Consensus       154 H~~  156 (656)
                      |+|
T Consensus        85 HNH   87 (91)
T PF03101_consen   85 HNH   87 (91)
T ss_pred             cCC
Confidence            765

It has been found that the proteins governing this response, which include FAR-RED ELONGATED HYPOCOTYL3 (FHY3) and FAR-RED-IMPAIRED RESPONSE1 (FAR1), are a pair of homologous proteins sharing significant sequence homology to mutator-like transposases. These proteins appear to be novel transcription factors, which are essential for activating the expression of FHY1 and FHL (for FHY1-like) and related genes, whose products are required for light-induced phytochrome A nuclear accumulation and subsequent light responses in plants. The FRS (FAR1 Related Sequences) family of proteins share a similar domain structure to mutator-like transposases, including an N-terminal C2H2 zinc finger domain, a central putative core transposase domain, and a C-terminal SWIM motif (named after SWI2/SNF and MuDR transposases). It seems plausible that the FRS family represent transcription factors derived from mutator-like transposases [, ]. This entry represents a domain found in FAR1 and FRS proteins. It contains a WRKY like fold and is therefore most likely a zinc binding DNA-binding domain.

>PF04434 SWIM: SWIM zinc finger; InterPro: IPR007527 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.29  E-value=0.00024  Score=52.43  Aligned_cols=28  Identities=36%  Similarity=0.738  Sum_probs=23.8

Q ss_pred             CCceeeeecc-CCCCCccchhHHHHHHHh
Q 006219          518 GSEFAFCDCA-WSMQGNICKHVVKVNMIC  545 (656)
Q Consensus       518 ~~~~~~CsC~-~~~~G~~CkH~~kV~~~~  545 (656)
                      +.....|+|+ |+..|.+|+|++||+...
T Consensus        11 ~~~~~~CsC~~~~~~~~~CkHi~av~~~~   39 (40)
T PF04434_consen   11 SIEQASCSCPYFQFRGGPCKHIVAVLLAL   39 (40)
T ss_pred             cccccEeeCCCccccCCcchhHHHHHHhh
Confidence            3567799997 888999999999998653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the SWIM (SWI2/SNF2 and MuDR) zinc-binding domain, which is found in a variety of prokaryotic and eukaryotic proteins, such as mitogen-activated protein kinase kinase kinase 1 (or MEKK1). It is also found in the related protein MEX (MEKK1-related protein X), a testis-expressed protein that acts as an E3 ubiquitin ligase through the action of E2 ubiquitin-conjugating enzymes in the proteasome degradation pathway; the SWIM domain is critical for MEX ubiquitination []. SWIM domains are also found in the homologous recombination protein Sws1 [], as well as in several hypothetical proteins. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding

>PF15299 ALS2CR8: Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8

Probab=96.54  E-value=0.033  Score=57.02  Aligned_cols=138  Identities=12%  Similarity=0.199  Sum_probs=81.5

Q ss_pred             EEEEEEeecCCCccCCCCcccccc----c-cccccCcCCCCCCcccCceeEEEEEEeecCCcEEEE--------------
Q 006219           87 EYRLYWCSFGPENYGEGGGVLPSR----K-YRLNTRNRAARPQSMRGCTCHFVVKRLYARPSLALL--------------  147 (656)
Q Consensus        87 ~y~~Y~Cs~Gp~~~~~~~~~~p~~----~-~~~~~~~r~~r~~tk~GC~c~~~Vkr~~~~~~v~v~--------------  147 (656)
                      -...|.|++|++.+......+-++    . ....++++..+++.+.+|||.+.|+....=|.+.+.              
T Consensus        33 g~~~~~Cq~G~dr~~~~~~k~~~~~~~~~~~~~~~~~~~~~~skK~~CPA~I~Ik~I~~FPdykv~~~~~~~~~~~r~~~  112 (225)
T PF15299_consen   33 GTKVYECQHGKDRNKKRKKKRKSQKNRDEEDKSKKKRRRSKPSKKRDCPARIYIKEIIKFPDYKVPTNSQKDTRRERRKA  112 (225)
T ss_pred             eceEEEeeCCCccchhhhhhhhhhccccccccccccccccccccCCCCCeEEEEEEEEEcCCcccccchhhhhHHHHHHH
Confidence            346788999999986443222111    1 112333344556778999999988874222332222              


Q ss_pred             -------------------EEec----ccccCCCCCccCCCCCcCcCCC-CCCcCCCCCHHHHHHHHHHHHcCCCh-HHH
Q 006219          148 -------------------IYND----RRHVNKSGFICHGPLDRDAIGP-GAKKIPYICNEIQQQTMSMIYLGIPE-ESV  202 (656)
Q Consensus       148 -------------------i~~~----~~H~~~~~~~~H~p~~~~~~~~-~~~~~~rIs~e~r~~I~~ll~~Gi~p-~~I  202 (656)
                                         +|-.    .+|.+      |..      |. .+.....|.+++.+.|.+|+..|++. .+|
T Consensus       113 ~~~lk~~l~~~~~~~~~~r~yv~lP~~~~H~~------H~~------~~~~~~~~q~~~~~v~~ki~eLv~~gv~~v~e~  180 (225)
T PF15299_consen  113 SKKLKKALLSGKSIEGERRFYVQLPSPEEHSG------HPI------GQEAAGLKQPLDPRVVEKIHELVAQGVTSVPEM  180 (225)
T ss_pred             HHHHHHHHhcCCCCCceEEEEEECCChHhcCC------Ccc------ccccccccccCCHHHHHHHHHHHHcccccHHHH
Confidence                               1111    22322      211      21 11345678999999999999999888 444


Q ss_pred             HHHHHHhhhh-------ccCCCCccCCCcHHHHHHHHHHHh
Q 006219          203 LEKHIEGIQR-------YCGSDAKVNSLASQYVQKLGMIIR  236 (656)
Q Consensus       203 l~~ire~~~~-------~~g~~~r~~llT~kDV~Ni~~~~~  236 (656)
                      .+.++..+..       .....+|...+|.+||+|......
T Consensus       181 k~~l~~fV~~~lf~~~~~p~~~n~~y~Pt~~di~n~~~~~~  221 (225)
T PF15299_consen  181 KRHLKKFVEEELFKDQEPPPPTNRRYFPTDKDIRNHMYSAK  221 (225)
T ss_pred             HHHHHHHhhhhccCCCCCCCCCccccCCchHHHHHHHHHHH
Confidence            4444333311       123447778899999999887654

>PF01610 DDE_Tnp_ISL3: Transposase; InterPro: IPR002560 Autonomous mobile genetic elements such as transposon or insertion sequences (IS) encode an enzyme, transposase, that is required for excising and inserting the mobile element

Probab=94.96  E-value=0.043  Score=56.38  Aligned_cols=94  Identities=16%  Similarity=0.122  Sum_probs=64.8

Q ss_pred             EEEeccccccccCCceEEEEEEcCCC-CeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhHH
Q 006219          295 IAADSTFGIKRLKYPLCTLLVFDSRQ-HALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPI  373 (656)
Q Consensus       295 v~iDsT~~tnky~~pL~tl~v~d~~g-~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~AI  373 (656)
                      |+||=+.....+..  |..+++|... .+-++  .++.+-+.+++..||..++   .... .-.+++|.+|...+...|+
T Consensus         1 lgiDE~~~~~g~~~--y~t~~~d~~~~~~~il--~i~~~r~~~~l~~~~~~~~---~~~~-~~~v~~V~~Dm~~~y~~~~   72 (249)
T PF01610_consen    1 LGIDEFAFRKGHRS--YVTVVVDLDTDTGRIL--DILPGRDKETLKDFFRSLY---PEEE-RKNVKVVSMDMSPPYRSAI   72 (249)
T ss_pred             CeEeeeeeecCCcc--eeEEEEECccCCceEE--EEcCCccHHHHHHHHHHhC---cccc-ccceEEEEcCCCccccccc
Confidence            35666655554443  4555666521 23333  3778888888888876552   1111 1268899999999999999


Q ss_pred             HHhcCCC-cccchHHHHHHHHHHH
Q 006219          374 REIFCCP-LLFSLWRVRRSWLRNI  396 (656)
Q Consensus       374 ~~VFp~~-~LLC~wHV~qaw~k~l  396 (656)
                      ++.||++ +.+-.|||.|...+.+
T Consensus        73 ~~~~P~A~iv~DrFHvvk~~~~al   96 (249)
T PF01610_consen   73 REYFPNAQIVADRFHVVKLANRAL   96 (249)
T ss_pred             cccccccccccccchhhhhhhhcc
Confidence            9999997 8999999999765544

Transposases have been grouped into various families [, , ]. This family includes the IS204 [], IS1001 [], IS1096 [] and IS1165 [] transposases. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PF06782 UPF0236: Uncharacterised protein family (UPF0236); InterPro: IPR009620 This is a group of proteins of unknown function

Probab=90.97  E-value=27  Score=39.86  Aligned_cols=255  Identities=12%  Similarity=0.082  Sum_probs=122.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCCChHHHHHHHHHhhhhccCCCCccCCCcHHHHHHHHHHHhhccccCCcchHHHHHHHHHhc
Q 006219          178 IPYICNEIQQQTMSMIYLGIPEESVLEKHIEGIQRYCGSDAKVNSLASQYVQKLGMIIRRSTHELDLDDQASIRLWVDRN  257 (656)
Q Consensus       178 ~~rIs~e~r~~I~~ll~~Gi~p~~Il~~ire~~~~~~g~~~r~~llT~kDV~Ni~~~~~~~~~~l~~~D~~Sv~~wv~~~  257 (656)
                      ..++|++.+..|.++... +|..+.-+.+    ....|.    ..++.+-|.|+.+...........         .+..
T Consensus       115 ~~R~S~~~~~~i~~~a~~-~sYr~aa~~l----~~~~~~----~~iS~~tV~~~v~~~g~~~~~~~~---------~~k~  176 (470)
T PF06782_consen  115 YQRISPELKEKIVELATE-MSYRKAAEIL----EELLGN----VSISKQTVWNIVKEAGFEEIKEEE---------KEKK  176 (470)
T ss_pred             ccchhHHHHHHHHHHHhh-cCHHHHHHHH----hhccCC----CccCHHHHHHHHHhccchhhhccc---------cccC
Confidence            467999999999998765 8877664433    111221    258999999998877621100000         1122


Q ss_pred             CCeeEEecCCCCCCCeEeecCcHHHHHHHHHhCCCeEEEEeccccccccCCceEEEEEEcCCCCeEEEEE-EEec--CCC
Q 006219          258 KKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAW-VVTR--SSA  334 (656)
Q Consensus       258 ~~~vf~y~d~~d~~~F~l~iqt~~Q~~~l~~fg~~~vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~-~i~~--~et  334 (656)
                      +.+++|-.    .|.+.+..|-.-....     .-.++.+..-+.-           .....++...+.- .+++  .+.
T Consensus       177 ~~~~LyIE----aDg~~v~~qg~~~~~~-----e~k~~~vheG~~~-----------~~~~~~R~~L~n~~~f~~~~~~~  236 (470)
T PF06782_consen  177 KVPVLYIE----ADGVHVKLQGKKKKKK-----EVKLFVVHEGWEK-----------EKPGGKRNKLKNKRHFVSGVGES  236 (470)
T ss_pred             CCCeEEEe----cCcceecccccccccc-----eeeEEEEEeeeee-----------eeccCCcceeecchheecccccc
Confidence            34566643    2334444331000000     0001111111000           0000111122211 2222  222


Q ss_pred             hhhHHHHHHHHHHHHhccCCCcc--eEEEEEcCchhhhhHHHHhcCCC-cccchHHHHHHHHHHHHhhcCChHHHHHHHH
Q 006219          335 KPDVTKWMKSLLDRARSIEPGWK--ISGFLIDDAAAEIDPIREIFCCP-LLFSLWRVRRSWLRNIVKKCTNIKIQREIFK  411 (656)
Q Consensus       335 ~e~~~~~L~~l~~~~~~~~p~~~--P~~fmtD~d~A~~~AI~~VFp~~-~LLC~wHV~qaw~k~l~~k~~~~e~~~~i~k  411 (656)
                      .+   .+...+.+.+.....--.  --++..|.+.=..++. +.||.. +.|..||+.|++.+.+..   ..+.+..+++
T Consensus       237 ~~---~~~~~v~~~i~~~Y~~~~~~~iiingDGa~WIk~~~-~~~~~~~~~LD~FHl~k~i~~~~~~---~~~~~~~~~~  309 (470)
T PF06782_consen  237 AE---EFWEEVLDYIYNHYDLDKTTKIIINGDGASWIKEGA-EFFPKAEYFLDRFHLNKKIKQALSH---DPELKEKIRK  309 (470)
T ss_pred             hH---HHHHHHHHHHHHhcCcccceEEEEeCCCcHHHHHHH-HhhcCceEEecHHHHHHHHHHHhhh---ChHHHHHHHH
Confidence            22   233455555544322111  2345567776555544 488876 899999999998877732   2344444554


Q ss_pred             HHHHHHhhhcCCCChHHHHHHHHHHhhc------hhHHHHHHHhhccchHHHHHHhhhcCCCCCCCcChHHHHhHHhhhh
Q 006219          412 RLGNILYSIWDGADPFVNLEVLIQDFVD------QTAFIEYFKASWMPKLAMWLSTMRALPLASQEASGAIEAYHVKLKT  485 (656)
Q Consensus       412 ~L~~ll~~~~~~~~f~~~le~~~~~~~d------~~~F~~Yf~~~Wl~~~e~Wa~~~R~lp~~~~~TNn~iES~h~~LK~  485 (656)
                      .|..    . +...++..++.+.....+      -..+..|+.++|-. +    ..|+.-  .+.......|+.|+.|.+
T Consensus       310 al~~----~-d~~~l~~~L~~~~~~~~~~~~~~~i~~~~~Yl~~n~~~-i----~~y~~~--~~~~g~g~ee~~~~~~s~  377 (470)
T PF06782_consen  310 ALKK----G-DKKKLETVLDTAESCAKDEEERKKIRKLRKYLLNNWDG-I----KPYRER--EGLRGIGAEESVSHVLSY  377 (470)
T ss_pred             HHHh----c-CHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHCHHH-h----hhhhhc--cCCCccchhhhhhhHHHH
Confidence            4421    1 112233333333322221      24688999999953 2    234320  112233468999999877


Q ss_pred             hhcc
Q 006219          486 KLFD  489 (656)
Q Consensus       486 ~ll~  489 (656)
                      .+..
T Consensus       378 RmK~  381 (470)
T PF06782_consen  378 RMKS  381 (470)
T ss_pred             HhcC
Confidence            6443

>PF03050 DDE_Tnp_IS66: Transposase IS66 family ; InterPro: IPR004291 Transposase proteins are necessary for efficient DNA transposition

Probab=89.05  E-value=0.42  Score=49.86  Aligned_cols=81  Identities=14%  Similarity=0.094  Sum_probs=49.6

Q ss_pred             EEEEeccccc----cc-cCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchh
Q 006219          294 LIAADSTFGI----KR-LKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAA  368 (656)
Q Consensus       294 vv~iDsT~~t----nk-y~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A  368 (656)
                      ++++|-|.-.    .+ -+.-+.++..-+      .+.|.+..+-..+.+..+|..           + ..++++|.-.+
T Consensus        69 ~~~~DET~~~vl~~~~g~~~~~Wv~~~~~------~v~f~~~~sR~~~~~~~~L~~-----------~-~GilvsD~y~~  130 (271)
T PF03050_consen   69 VVHADETGWRVLDKGKGKKGYLWVFVSPE------VVLFFYAPSRSSKVIKEFLGD-----------F-SGILVSDGYSA  130 (271)
T ss_pred             eeccCCceEEEeccccccceEEEeeeccc------eeeeeecccccccchhhhhcc-----------c-ceeeecccccc
Confidence            7778877654    22 222333333322      567777777777765555422           1 24788898876


Q ss_pred             hhhHHHHhcCCCcccchHHHHHHHHHHH
Q 006219          369 EIDPIREIFCCPLLFSLWRVRRSWLRNI  396 (656)
Q Consensus       369 ~~~AI~~VFp~~~LLC~wHV~qaw~k~l  396 (656)
                      ... +.   +..+..|+-|+.+.+.+-.
T Consensus       131 Y~~-~~---~~~hq~C~AH~~R~~~~~~  154 (271)
T PF03050_consen  131 YNK-LA---GITHQLCWAHLRRDFQDAA  154 (271)
T ss_pred             ccc-cc---ccccccccccccccccccc
Confidence            655 22   5569999999998765444

This family includes the bacterial insertion sequence (IS) element, IS66, from Agrobacterium tumefaciens []. IS66 may cause genetic and structural variations of the T region and the vir region of the octopine Ti plasmids []. More information about these proteins can be found at Protein of the Month: Transposase [].

>COG4279 Uncharacterized conserved protein [Function unknown]

Probab=88.07  E-value=0.25  Score=50.67  Aligned_cols=33  Identities=30%  Similarity=0.649  Sum_probs=26.3

Q ss_pred             eeeecc-CCCCCccchhHHHHHHHhccCCCCCCCcch
Q 006219          522 AFCDCA-WSMQGNICKHVVKVNMICANNEGYQPSMSF  557 (656)
Q Consensus       522 ~~CsC~-~~~~G~~CkH~~kV~~~~~~~~~~~~~~s~  557 (656)
                      ..|||+ ++   +||||+.+|+.+....-...|.+=+
T Consensus       125 ~dCSCPD~a---nPCKHi~AvyY~lae~f~~dPflif  158 (266)
T COG4279         125 TDCSCPDYA---NPCKHIAAVYYLLAEKFDEDPFLIF  158 (266)
T ss_pred             cccCCCCcc---cchHHHHHHHHHHHHHhccCCeeee
Confidence            479996 65   8999999999888887776676544

>PF13610 DDE_Tnp_IS240: DDE domain

Probab=87.61  E-value=0.16  Score=47.84  Aligned_cols=79  Identities=14%  Similarity=0.098  Sum_probs=60.5

Q ss_pred             EEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhHH
Q 006219          294 LIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDPI  373 (656)
Q Consensus       294 vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~AI  373 (656)
                      .+++|-||---+ |---|..-++|..|.  .+.+.++...+......||+.+++...     -.|..|+||+..+...|+
T Consensus         3 ~w~~DEt~iki~-G~~~yl~~aiD~~~~--~l~~~ls~~Rd~~aA~~Fl~~~l~~~~-----~~p~~ivtDk~~aY~~A~   74 (140)
T PF13610_consen    3 SWHVDETYIKIK-GKWHYLWRAIDAEGN--ILDFYLSKRRDTAAAKRFLKRALKRHR-----GEPRVIVTDKLPAYPAAI   74 (140)
T ss_pred             EEEEeeEEEEEC-CEEEEEEEeeccccc--chhhhhhhhcccccceeeccccceeec-----cccceeecccCCccchhh
Confidence            689999994322 223445668898888  689999998888887777766655442     369999999999999999


Q ss_pred             HHhcCCC
Q 006219          374 REIFCCP  380 (656)
Q Consensus       374 ~~VFp~~  380 (656)
                      ++.++..
T Consensus        75 ~~l~~~~   81 (140)
T PF13610_consen   75 KELNPEG   81 (140)
T ss_pred             hhccccc
Confidence            9999863

>PF00665 rve: Integrase core domain; InterPro: IPR001584 Integrase comprises three domains capable of folding independently and whose three-dimensional structures are known

Probab=83.82  E-value=6.9  Score=34.69  Aligned_cols=75  Identities=11%  Similarity=0.009  Sum_probs=51.8

Q ss_pred             eEEEEeccccc-cccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhh
Q 006219          293 SLIAADSTFGI-KRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEID  371 (656)
Q Consensus       293 ~vv~iDsT~~t-nky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~  371 (656)
                      ..+++|.++-- ...+-..+.++++|.+-+ +.+++.+...++.+.+...|...+...+.    ..|+.+.+|...+..+
T Consensus         7 ~~~~~D~~~~~~~~~~~~~~~~~~iD~~S~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~~p~~i~tD~g~~f~~   81 (120)
T PF00665_consen    7 ERWQIDFTPMPIPDKGGRVYLLVFIDDYSR-FIYAFPVSSKETAEAALRALKRAIEKRGG----RPPRVIRTDNGSEFTS   81 (120)
T ss_dssp             TEEEEEEEEETGGCTT-CEEEEEEEETTTT-EEEEEEESSSSHHHHHHHHHHHHHHHHS-----SE-SEEEEESCHHHHS
T ss_pred             CEEEEeeEEEecCCCCccEEEEEEEECCCC-cEEEEEeeccccccccccccccccccccc----ccceeccccccccccc
Confidence            37999999433 223337888999998644 55788888887888777777665555532    1289999999988775


Q ss_pred             H
Q 006219          372 P  372 (656)
Q Consensus       372 A  372 (656)
                      .
T Consensus        82 ~   82 (120)
T PF00665_consen   82 H   82 (120)
T ss_dssp             H
T ss_pred             c
Confidence            4

However, the manner in which the N-terminal, catalytic, and C-terminal domains interact in the holoenzyme remains obscure. Numerous studies indicate that the enzyme functions as a multimer, minimally a dimer. The integrase proteins from Human immunodeficiency virus 1 (HIV-1) and Avian sarcoma virus (ASV) have been studied most carefully with respect to the structural basis of catalysis. Although the active site of ASV integrase does not undergo significant conformational changes on binding the required metal cofactor, that of HIV-1 does. This active site-mediated conformational change in HIV-1 reorganises the catalytic core and C-terminal domains and appears to promote an interaction that is favourable for catalysis []. Retroviral integrase is synthesised as part of the POL polyprotein that contains; an aspartyl protease, a reverse transcriptase, RNase H and integrase. POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. The presence of retrovirus integrase-related gene sequences in eukaryotes is known. Bacterial transposases involved in the transposition of the insertion sequence also belong to this group. HIV integrase catalyses the incorporation of virally derived DNA into the human genome. This unique step in the virus life cycle provides a variety of points for intervention and hence is an attractive target for the development of new therapeutics for the treatment of AIDS []. Substrate recognition by the retroviral integrase enzyme is critical for retroviral integration. To catalyse this recombination event, integrase must recognise and act on two types of substrates, viral DNA and host DNA, yet the necessary interactions exhibit markedly different degrees of specificity [].; GO: 0015074 DNA integration; PDB: 3AO3_A 3OVN_A 3AO5_A 3AO4_A 3AO1_A 1C6V_D 3HPG_A 3HPH_A 3OYD_A 3OYF_B ....

>PF08731 AFT: Transcription factor AFT; InterPro: IPR014842 AFT (activator of iron transcription) is an iron regulated transcriptional activator that regulates the expression of genes involved in iron homeostasis

Probab=81.08  E-value=5.4  Score=36.28  Aligned_cols=33  Identities=24%  Similarity=0.446  Sum_probs=22.9

Q ss_pred             CCcccCceeEEEEEEee--cCCcEEEEEEecccccC
Q 006219          123 PQSMRGCTCHFVVKRLY--ARPSLALLIYNDRRHVN  156 (656)
Q Consensus       123 ~~tk~GC~c~~~Vkr~~--~~~~v~v~i~~~~~H~~  156 (656)
                      ....+.|.|+|+|+..+  ....|.+++.+ +.|+|
T Consensus        75 ~t~srk~~CPFriRA~yS~k~k~W~lvvvn-n~HnH  109 (111)
T PF08731_consen   75 RTKSRKNTCPFRIRANYSKKNKKWTLVVVN-NEHNH  109 (111)
T ss_pred             cccccccCCCeEEEEEEEecCCeEEEEEec-CCcCC
Confidence            44557788888887753  35778888887 45765

This entry includes the paralogous pair of transcription factors AFT1 and AFT2.

>PF03106 WRKY: WRKY DNA -binding domain; InterPro: IPR003657 The WRKY domain is a 60 amino acid region that is defined by the conserved amino acid sequence WRKYGQK at its N-terminal end, together with a novel zinc-finger- like motif

Probab=80.27  E-value=6.2  Score=32.01  Aligned_cols=30  Identities=23%  Similarity=0.514  Sum_probs=22.9

Q ss_pred             cCceeEEEEEEeecCCcEEEEEEecccccCC
Q 006219          127 RGCTCHFVVKRLYARPSLALLIYNDRRHVNK  157 (656)
Q Consensus       127 ~GC~c~~~Vkr~~~~~~v~v~i~~~~~H~~~  157 (656)
                      .||+|.=.|.+...++.+.+++|. ++|+|.
T Consensus        30 ~~C~akK~Vqr~~~d~~~~~vtY~-G~H~h~   59 (60)
T PF03106_consen   30 PGCPAKKQVQRSADDPNIVIVTYE-GEHNHP   59 (60)
T ss_dssp             TTEEEEEEEEEETTCCCEEEEEEE-S--SS-
T ss_pred             cChhheeeEEEecCCCCEEEEEEe-eeeCCC
Confidence            399999999997778999888898 668763

The WRKY domain is found in one or two copies in a superfamily of plant transcription factors involved in the regulation of various physiological programs that are unique to plants, including pathogen defence, senescence, trichome development and the biosynthesis of secondary metabolites. The WRKY domain binds specifically to the DNA sequence motif (T)(T)TGAC(C/T), which is known as the W box. The invariant TGAC core of the W box is essential for function and WRKY binding []. Some proteins known to contain a WRKY domain include Arabidopsis thaliana ZAP1 (Zinc-dependent Activator Protein-1) and AtWRKY44/TTG2, a protein involved in trichome development and anthocyanin pigmentation; and wild oat ABF1-2, two proteins involved in the gibberelic acid-induced expression of the alpha-Amy2 gene. Structural studies indicate that this domain is a four-stranded beta-sheet with a zinc binding pocket, forming a novel zinc and DNA binding structure []. The WRKYGQK residues correspond to the most N-terminal beta-strand, which enables extensive hydrophobic interactions, contributing to the structural stability of the beta-sheet.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2AYD_A 1WJ2_A 2LEX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	656
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 3e-08
 Identities = 96/648 (14%), Positives = 193/648 (29%), Gaps = 179/648 (27%)

Query: 30  FGTAEHHDEVALIPYARVDSFIIG-ECSNVECPTRFHIERGRKRSRGSLKEYKDDEYLEY 88
           F T EH  +   I     D+F+   +C +V+   +  +    K     +   KD      
Sbjct: 9   FETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAVSGTL 65

Query: 89  RLYW--CSFGPENYGEGGGVLPSRKYRLNTRNRAARPQSMRGCTCHFVVKRLYAR---PS 143
           RL+W   S   E   +    +    Y+                   F++  +      PS
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYK-------------------FLMSPIKTEQRQPS 106

Query: 144 LALLIYNDRRHV--NKSGFICHGPLDRDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEES 201
           +   +Y ++R    N +       + R       +       +++Q  + +     P ++
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSR------LQPY----LKLRQALLEL----RPAKN 152

Query: 202 VLEKHIEGIQRYCGSDAKVNSLASQYVQKLGM--------IIRRSTHELDLDDQASIRLW 253
           VL   I+G+    G       +   Y  +  M        +   ++ E  L+    +   
Sbjct: 153 VL---IDGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 254 VDRNKKSIFFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTL 313
           +D N  S     D S        ++      ++ R              +K   Y  C L
Sbjct: 209 IDPNWTS---RSDHSSNIK----LRIHSIQAELRRL-------------LKSKPYENC-L 247

Query: 314 LVFDSRQHALPVAW----------VVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLI 363
           LV  + Q+    AW          + TR      VT ++ +      S++          
Sbjct: 248 LVLLNVQN--AKAWNAFNLSCKILLTTRFK---QVTDFLSAATTTHISLDHHSM--TLTP 300

Query: 364 DDA------AAEID----PIREIFCCPLLFSL--------------WR-VRRSWLRNIVK 398
           D+         +      P   +   P   S+              W+ V    L  I++
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE 360

Query: 399 KCTNI---KIQREIFKRLG------NI----LYSIWDGADPFVNLEVLIQDFVDQTAFIE 445
              N+      R++F RL       +I    L  IW        + V++      +   +
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSD-VMVVVNKLHKYSLVEK 419

Query: 446 YFKASWMPKLAMWLSTMRALPLASQEAS---GAIEAYHVKLK------TKLFDDS----- 491
             K S    +++    +        E +     ++ Y++            + D      
Sbjct: 420 QPKES---TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSH 476

Query: 492 ---HLGALQRVDWVSSQKDSSLTHLVWNPGSEFAF-------CDCAWSMQGNICKHVVKV 541
              HL  ++       ++ +    +  +    F F          AW+  G+I   + ++
Sbjct: 477 IGHHLKNIEH-----PERMTLFRMVFLD----FRFLEQKIRHDSTAWNASGSILNTLQQL 527

Query: 542 NM----ICANNEGYQPSMSFQSLREVLM----NLWTKPMDDSVELDLS 581
                 IC N+  Y       ++ + L     NL      D + + L 
Sbjct: 528 KFYKPYICDNDPKY--ERLVNAILDFLPKIEENLICSKYTDLLRIALM 573

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 66/565 (11%), Positives = 146/565 (25%), Gaps = 189/565 (33%)

Query: 2   DIVES---------LFDIQVQDPPE------EDFSSIDLTWTKFGTAEHHDEVALIPYAR 46
            I+ S         LF   +    E      E+   I+  +               P   
Sbjct: 53  HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFL----MSPIKTEQRQPSMM 108

Query: 47  VDSFIIGECSN-----VECPTRFHIERGRKRS--RGSLKEYKDDEYL------------- 86
              +I  E  +      +   ++++ R +     R +L E +  + +             
Sbjct: 109 TRMYI--EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV 166

Query: 87  --------------EYRLYWCSFGPENYGEGGGVLP--SRKYRLNTRNRAARPQSMRGCT 130
                         +++++W +    N      VL    +       N  +R        
Sbjct: 167 ALDVCLSYKVQCKMDFKIFWLNLK--NCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 131 CHFV-----VKRLYARPSL--ALLIYND---RRHVNKSGFICHGPL---DR---DAIGPG 174
                    ++RL         LL+  +    +  N     C   L    +   D +   
Sbjct: 225 LRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAA 284

Query: 175 AKKIPYICNEI----QQQTMSMI--YLGI-----PEESV-------------LEKHIEGI 210
                 + +        +  S++  YL       P E +             +   +   
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATW 344

Query: 211 QRYCGSDAKVNSLASQYVQ--KLGMIIRRSTHELDLDDQASIRLWVDRNKKSIF------ 262
             +            ++V   KL  II  S + L+  +    +++      S+F      
Sbjct: 345 DNW------------KHVNCDKLTTIIESSLNVLEPAEYR--KMFDRL---SVFPPSAHI 387

Query: 263 -------FYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPLCTLLV 315
                   + D  ++D  ++       + ++ +    SL+        K     + ++  
Sbjct: 388 PTILLSLIWFDVIKSDVMVV-------VNKLHK---YSLVEKQP----KESTISIPSIY- 432

Query: 316 FDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIE--PGWKISGFLID--------- 364
            + +                 +     +S++D     +      +    +D         
Sbjct: 433 LELKVKL-------------ENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479

Query: 365 -----DAAAEIDPIREIFCCPLLFSLWRVRRSWLRN-IVKKCTNIKIQREIFKRLGNI-L 417
                +    +   R +F   L F        +L   I    T       I   L  +  
Sbjct: 480 HLKNIEHPERMTLFRMVF---LDF-------RFLEQKIRHDSTAWNASGSILNTLQQLKF 529

Query: 418 YS--IWDGADPFVNLEVLIQDFVDQ 440
           Y   I D    +  L   I DF+ +
Sbjct: 530 YKPYICDNDPKYERLVNAILDFLPK 554

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 75/547 (13%), Positives = 167/547 (30%), Gaps = 166/547 (30%)

Query: 149 YNDRRHVNKSGFI----CHGPLD--RDAIGPGAKKIPYICNEIQQQTMSMIYLGIPEESV 202
           Y D   V +  F+    C    D  +  +    ++I +I       + ++         +
Sbjct: 18  YKDILSVFEDAFVDNFDCKDVQDMPKSILS--KEEIDHIIMSKDAVSGTLRLFWT----L 71

Query: 203 LEKHIEGIQRYCGSDAKVN------SLASQYVQK-LGMIIRRSTHE-LDLDDQASIRLWV 254
           L K  E +Q++     ++N       + ++  Q  +   +     + L  D+Q   +  V
Sbjct: 72  LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 255 DRNKKSI----FFYQDSSETDPFILGIQTEWQLQQMIRFGHRSLIAADSTFGIKRLKYPL 310
            R +  +       +     +  I G         ++  G ++ +A D            
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG---------VLGSG-KTWVALDV----------- 170

Query: 311 CTLLVFDSRQHALP--VAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAA 368
               +    Q  +   + W+  ++   P+    ++ L      I+P W       D ++ 
Sbjct: 171 ---CLSYKVQCKMDFKIFWLNLKNCNSPETV--LEMLQKLLYQIDPNWTS---RSDHSSN 222

Query: 369 EIDPIREIFCCPLLFSLWRVRRSWLRNIVKKCTNIKIQREIFKR--LGNILYSIWDG--A 424
               I  I             ++ LR +        ++ + ++   L  +L ++ +    
Sbjct: 223 IKLRIHSI-------------QAELRRL--------LKSKPYENCLL--VLLNVQNAKAW 259

Query: 425 DPF-VNLEVLI-------QDFVDQTA----FIEYFKASWMPK-----LAMWLST-MRALP 466
           + F ++ ++L+        DF+         +++   +  P      L  +L    + LP
Sbjct: 260 NAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLP 319

Query: 467 LASQEASGAIEAYHVKLKTKLFDDSHLGALQRVDWVSSQK-----DSSLTHLVWNPGSEF 521
              +E         + +  +   D  L        V+  K     +SSL  L   P +E+
Sbjct: 320 ---REVLT-TNPRRLSIIAESIRD-GLATWDNWKHVNCDKLTTIIESSLNVL--EP-AEY 371

Query: 522 --AFCDCAWSMQGNICKHVVKVNMICANNEGYQPSMSFQSLREVLMNLWTKPMDDSVELD 579
              F   +      +      +           P+        +L  +W   +   V + 
Sbjct: 372 RKMFDRLS------VFPPSAHI-----------PT-------ILLSLIWFDVIKSDVMVV 407

Query: 580 LSVAWTHNMLDQIKQLVELSSSDDIGAVVNNLPLKWVSKKGRTSVGIPSSTLAL-PSSSK 638
           +             +L + S           L  K   K+   S  IPS  L L      
Sbjct: 408 V------------NKLHKYS-----------LVEKQ-PKESTIS--IPSIYLELKVKLEN 441

Query: 639 SSTVHKK 645
              +H+ 
Sbjct: 442 EYALHRS 448

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	656
d1exqa_	154	Retroviral integrase, catalytic domain {Human immu	82.14

>d1exqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Human immunodeficiency virus type 1 [TaxId: 11676]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Retroviral integrase, catalytic domain
domain: Retroviral integrase, catalytic domain
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=82.14  E-value=1.6  Score=37.72  Aligned_cols=69  Identities=13%  Similarity=0.173  Sum_probs=48.8

Q ss_pred             eEEEEeccccccccCCceEEEEEEcCCCCeEEEEEEEecCCChhhHHHHHHHHHHHHhccCCCcceEEEEEcCchhhhhH
Q 006219          293 SLIAADSTFGIKRLKYPLCTLLVFDSRQHALPVAWVVTRSSAKPDVTKWMKSLLDRARSIEPGWKISGFLIDDAAAEIDP  372 (656)
Q Consensus       293 ~vv~iDsT~~tnky~~pL~tl~v~d~~g~~~PvA~~i~~~et~e~~~~~L~~l~~~~~~~~p~~~P~~fmtD~d~A~~~A  372 (656)
                      |++.+|.||--|+     +.++++|.+ ..+..++.+ .+.+.+.+..+|..+...       ..|+.|.||....+.++
T Consensus         4 g~W~~D~~~~~~k-----~ilv~vD~~-Sr~~~~~~~-~~~~~~~v~~~l~~~~~~-------~~p~~I~sDnG~eF~s~   69 (154)
T d1exqa_           4 GIWQLDCTHLEGK-----VILVAVHVA-SGYIEAEVI-PAETGQETAYFLLKLAGR-------WPVKTIHTDNGSNFTGA   69 (154)
T ss_dssp             GEEEEEEEEETTE-----EEEEEEETT-TTEEEEEEE-SSSSHHHHHHHHHHHHHH-------SCCCEEECCCCGGGTSH
T ss_pred             CceeeEEEEECCE-----EEEEEEECc-CCcEEEEEe-cCcchHHHHhhhhhheec-------cCCCEEEEcCCccccch
Confidence            3799999987665     467778887 445677665 556777777777655422       24889999999888766


Q ss_pred             HHH
Q 006219          373 IRE  375 (656)
Q Consensus       373 I~~  375 (656)
                      .-.
T Consensus        70 ~~~   72 (154)
T d1exqa_          70 TVR   72 (154)
T ss_dssp             HHH
T ss_pred             hhh
Confidence            543