Citrus Sinensis ID: 006256

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650---
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
cccccccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEHHHHHHHHHccccEEEEcccHHcccccHHHHHHHHHHHHHHHHccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccHHHHHHHHccccccc
ccccccccccEcccEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccEHHHccccccccccEEEEcccccccccHHHHHHHHHHHHHcccEcccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccccHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHccccEEEEEHHHHHHHHHHHcEEEEcHHHHHHccHHHHHHHHHHHHHHHHHccccEEEEEEcEEEccccccccccccccccHHHHEccccccccccccccccccccEEEccccccccHHHHHEEEHcccccccccHHHHHHHHccccEEc
mdsrrssralidpkvrqvgfftnaplppdrtqsdppdpihstpladasspgnflspvmippprhpsssllprlphspsdafpppsptttttttslgdfsddvtaassppSAAAAAARVrgrgssvkqqgaassfpgggfevppsvkapssvpasglttvsvvklppgisenaggsvsVEVQsdralnskplkekTSKAERRAIQEAQRAAKAAAKAEgiktpaatalanakptkstrpspqrndspvVVAAsekkggdrsvekdrkkdvphprmqyddksrVQKLkkrsvvkptearNRVELFrhlpqyehgtqlpvlqskffqldtlhpaVYKVGLQylsgdicggNARCIAMLQAFQEAIRdystppaktlsrDLTAKISSYVSFlidcrplsvsMGNAIRFLKSQIAkipislsesEAKATLHSDIERFINEKIILADRVIVKHAVTkirdgdvlltyGSSSAVEMILQHAHELGKQFRVVIvdsrpkheGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASsvlsngtvcsRVGTACVAMVAYGFHIPVLVCCeaykfhervqldsicsnelgdpdsiskvpgredinhldgwdksenLQLLNLiydatpsdyVSLIITdygmipptsvpVIVReygrgqlwi
mdsrrssralidpkvrqvgFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLppgisenaggsvsvevqsdralnskplkektskaERRAIQEAQRAAKAAakaegiktpaatalanakptkstrpspqrndspvvvaasekkggdrsvekdrkkdvphprmqyddksrvqklkkrsvvkptearnrVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINekiiladrvIVKHAvtkirdgdvLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIppprhpsssllprlphspsDAFpppsptttttttsLGDFSDDVTaassppsaaaaaarvrgrgssvKQQGAASSFPGGGFEvppsvkapssvpasGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSkaerraiqeaqraakaaakaeGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEgklllrrlvrkglSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
***********************************************************************************************************************************************************************************************************************************************************************************************************VELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNEL*************DINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLW*
**********IDPKVRQVGFF****************************************************************************************************************************************************************************************************************************************************************************************LFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGR**LWI
********ALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPS*************TTSLGDFSDDVT*******************************PGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPL***************************IKTPAATA********************************************HPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
********ALIDPKVRQVGFFTNA*******************************PVMIPP**HPSSSLLPRLPHSPSD*****************************************************************************TTVSVVK*****************************************************************************************************************DDKSRVQKLKKR********RNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDSRRSSRALIDPKVRQVGFFTNAPLPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMIPPPRHPSSSLLPRLPHSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query653 2.2.26 [Sep-21-2011]
P41111523 Translation initiation fa yes no 0.630 0.787 0.449 1e-100
Q61749524 Translation initiation fa yes no 0.632 0.788 0.448 1e-99
Q3T058524 Translation initiation fa yes no 0.632 0.788 0.454 2e-99
Q63186524 Translation initiation fa yes no 0.632 0.788 0.443 5e-99
Q9UI10523 Translation initiation fa yes no 0.629 0.785 0.451 4e-98
Q54FM3619 Translation initiation fa yes no 0.584 0.617 0.453 2e-94
Q09924467 Probable translation init yes no 0.486 0.680 0.461 3e-85
P12754651 Translation initiation fa yes no 0.433 0.434 0.421 3e-59
Q8U4G6324 Putative translation init yes no 0.428 0.864 0.299 3e-31
Q9V281324 Putative translation init yes no 0.459 0.925 0.277 3e-30
>sp|P41111|EI2BD_RABIT Translation initiation factor eIF-2B subunit delta OS=Oryctolagus cuniculus GN=EIF2B4 PE=2 SV=2 Back     alignment and function desciption
 Score =  367 bits (943), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 204/454 (44%), Positives = 277/454 (61%), Gaps = 42/454 (9%)

Query: 197 KAERRAIQEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSPQRNDSPVVVAASEKKG 256
           +AERRA QEA+RA K A K E                    P PQ + S    A     G
Sbjct: 100 RAERRAKQEAERALKQARKGE-----------------QGGPPPQASPS---TAGEAPAG 139

Query: 257 GDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEAR----NRVELFRHLPQYEHG 312
           G R  E            Q DD + +++L ++S  +    R    ++V LF HLPQY   
Sbjct: 140 GKRLTE----------HTQADDPTLLRRLVRKSERQQVPTRKDYGSKVSLFSHLPQYSRQ 189

Query: 313 TQLPVLQSKFFQL--DTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPA 370
             L    +++  +    +HPA+ ++GLQY  G I G NARCIA+L+A Q+ I+DY+TPP 
Sbjct: 190 NSL----TQYMSIPSSVIHPAMVRLGLQYSQGLISGSNARCIALLRALQQVIQDYTTPPN 245

Query: 371 KTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIE 430
           + LSRDL  K+  Y+ FL  CRPLS SM NAI+FL  +I  +  +  E EAKA L +  +
Sbjct: 246 EELSRDLVNKLKPYICFLTQCRPLSASMYNAIKFLNKEITGVSSTKREEEAKAELQAAAD 305

Query: 431 RFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRP 490
           R++ EKI+LA + I++ A  KI +GDV+L YG SS V  ILQ A   G++FRVV+VDSRP
Sbjct: 306 RYVQEKIVLAAQAILRFASKKISNGDVILVYGCSSLVSRILQEAWSEGRKFRVVVVDSRP 365

Query: 491 KHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAM 550
           + EG+ +LR LVR G+  +Y  I A SY++ EV++V LGA ++L+NG+V SRVGTA +A+
Sbjct: 366 RLEGRHMLRFLVRAGVPASYLLIPAASYVLPEVSKVLLGAHALLANGSVMSRVGTAQLAL 425

Query: 551 VAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQ 610
           VA   ++PVLVCCE YKF ERVQ D+  SNEL DPD +    G  D   L  W    +L+
Sbjct: 426 VARAHNVPVLVCCETYKFCERVQTDAFVSNELDDPDDLQCERG--DHVALANWQSHPSLR 483

Query: 611 LLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVR 644
           LLNL+YD TP + V L+IT+ GMIP +SVPV++R
Sbjct: 484 LLNLVYDVTPPELVDLVITELGMIPCSSVPVVLR 517
Catalyzes the exchange of eukaryotic initiation factor 2-bound GDP for GTP.
Oryctolagus cuniculus (taxid: 9986)
>sp|Q61749|EI2BD_MOUSE Translation initiation factor eIF-2B subunit delta OS=Mus musculus GN=Eif2b4 PE=2 SV=2 Back     alignment and function description
>sp|Q3T058|EI2BD_BOVIN Translation initiation factor eIF-2B subunit delta OS=Bos taurus GN=EIF2B4 PE=2 SV=1 Back     alignment and function description
>sp|Q63186|EI2BD_RAT Translation initiation factor eIF-2B subunit delta OS=Rattus norvegicus GN=Eif2b4 PE=2 SV=1 Back     alignment and function description
>sp|Q9UI10|EI2BD_HUMAN Translation initiation factor eIF-2B subunit delta OS=Homo sapiens GN=EIF2B4 PE=1 SV=2 Back     alignment and function description
>sp|Q54FM3|EI2BD_DICDI Translation initiation factor eIF-2B subunit delta OS=Dictyostelium discoideum GN=eif2b4 PE=3 SV=1 Back     alignment and function description
>sp|Q09924|EI2BD_SCHPO Probable translation initiation factor eIF-2B subunit delta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif224 PE=1 SV=1 Back     alignment and function description
>sp|P12754|EI2BD_YEAST Translation initiation factor eIF-2B subunit delta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GCD2 PE=1 SV=1 Back     alignment and function description
>sp|Q8U4G6|EI2B2_PYRFU Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638 / JCM 8422 / Vc1) GN=PF0122 PE=3 SV=2 Back     alignment and function description
>sp|Q9V281|EI2B2_PYRAB Putative translation initiation factor eIF-2B subunit 2 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=aIF-2BII PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
225451956650 PREDICTED: translation initiation factor 0.960 0.964 0.699 0.0
224127602634 predicted protein [Populus trichocarpa] 0.952 0.981 0.705 0.0
297801756641 eukaryotic translation initiation factor 0.966 0.984 0.675 0.0
15240967642 translation initiation factor eIF-2B del 0.969 0.985 0.679 0.0
356551080659 PREDICTED: translation initiation factor 0.980 0.971 0.660 0.0
255560374638 translation initiation factor 2b, delta 0.967 0.990 0.691 0.0
356567176627 PREDICTED: translation initiation factor 0.955 0.995 0.696 0.0
356573663660 PREDICTED: translation initiation factor 0.972 0.962 0.666 0.0
449440905651 PREDICTED: translation initiation factor 0.964 0.967 0.626 0.0
359490928649 PREDICTED: translation initiation factor 0.954 0.959 0.627 0.0
>gi|225451956|ref|XP_002283177.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  863 bits (2229), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 473/676 (69%), Positives = 541/676 (80%), Gaps = 49/676 (7%)

Query: 1   MDSRRSSRALIDPKVRQVGFFTNAP-LPPDRTQSDPPDPIHSTPLADASSPGNFLSPVMI 59
           MD RR +R +IDPKVRQVGFF  AP   P RTQS PP+      +AD S  GN LSPVMI
Sbjct: 1   MDPRRGARVVIDPKVRQVGFF--APGASPGRTQSGPPESSSPP-VADNSPTGNSLSPVMI 57

Query: 60  PPPRHPSSSLLPRLP-----------------HSPSDAFPPPSPTTT-TTTTSLGDFSDD 101
           PPPRH S +LL   P                 ++PS+ F   SPT +  +    G+FS+D
Sbjct: 58  PPPRHASDNLLSARPALYPPLRRPGDTIPVGSYNPSEFFHGTSPTASFYSKVGDGEFSED 117

Query: 102 VTAASSPPSAAAAAARVRGRGSSVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSV 161
                      A+ A    RG+S K    ASSFPGGGF++       ++V  S LTTVSV
Sbjct: 118 -----------ASGAGWTHRGNSGK---VASSFPGGGFDL-------TAVKPSNLTTVSV 156

Query: 162 VKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAIQEAQRAAKAAAKAEGIKT 221
           V +PPGIS  +GG+ S+EVQ+++  +S+ LKEKTSKAERRA+QEAQRAAKAAAKAE  K 
Sbjct: 157 VNMPPGISVKSGGA-SIEVQNEQPASSRSLKEKTSKAERRALQEAQRAAKAAAKAEVSKA 215

Query: 222 P-AATALA---NAKPTKSTRPSPQRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYD 277
           P AA+ +A   NAKP K ++ S Q+ DS   V ASEKKG DR  EKDRKKDVPHPRMQ+D
Sbjct: 216 PIAASGVATSVNAKPAKVSKLSSQKKDS-ASVTASEKKGVDRPPEKDRKKDVPHPRMQFD 274

Query: 278 DKSRVQKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGL 337
           DKSRV+K K+R+VV+P E RNRVELFRHLPQYE GT LP L+SKFF LD +HPAVYKVGL
Sbjct: 275 DKSRVEKAKRRAVVRPIEVRNRVELFRHLPQYERGTLLPDLESKFFLLDPMHPAVYKVGL 334

Query: 338 QYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVS 397
           QYL+GD+ GGNARCIAMLQAFQEAI+DYSTPP KTL RDLTA++SSYVSFLI+CRPLS+S
Sbjct: 335 QYLAGDVSGGNARCIAMLQAFQEAIKDYSTPPEKTLVRDLTARLSSYVSFLIECRPLSIS 394

Query: 398 MGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDV 457
           MGNAIRFLKS+IAK+P+SLSESEAKA+L SDI RFINEKI+LAD+VIV+HAVTKIRDGDV
Sbjct: 395 MGNAIRFLKSRIAKLPLSLSESEAKASLQSDINRFINEKIVLADKVIVRHAVTKIRDGDV 454

Query: 458 LLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAIS 517
           LLTYGSSSAVEMIL +AHELGKQFRVV+VDSRPK EG+LLLRRLV KGLSCTYTHINA+S
Sbjct: 455 LLTYGSSSAVEMILLYAHELGKQFRVVVVDSRPKLEGQLLLRRLVGKGLSCTYTHINAVS 514

Query: 518 YIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSI 577
           YI+HEVTRVFLGASSVLSNGTV SRVGTACV+MVA+ F +PVLVCCEAYKF+ERVQLDSI
Sbjct: 515 YIMHEVTRVFLGASSVLSNGTVYSRVGTACVSMVAHAFRVPVLVCCEAYKFYERVQLDSI 574

Query: 578 CSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPT 637
           CSNELGDPD+ISKVPGRE+IN+LD W KSENLQLLNLIYDATPSDYVS+IITDYGM+PPT
Sbjct: 575 CSNELGDPDAISKVPGREEINYLDDWAKSENLQLLNLIYDATPSDYVSMIITDYGMVPPT 634

Query: 638 SVPVIVREYGRGQLWI 653
           SVPVIVREY R  LWI
Sbjct: 635 SVPVIVREYRREHLWI 650

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224127602|ref|XP_002329318.1| predicted protein [Populus trichocarpa] gi|222870772|gb|EEF07903.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297801756|ref|XP_002868762.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] gi|297314598|gb|EFH45021.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15240967|ref|NP_198680.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] gi|10176832|dbj|BAB10154.1| unnamed protein product [Arabidopsis thaliana] gi|17064894|gb|AAL32601.1| Unknown protein [Arabidopsis thaliana] gi|31711742|gb|AAP68227.1| At5g38640 [Arabidopsis thaliana] gi|332006961|gb|AED94344.1| translation initiation factor eIF-2B delta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356551080|ref|XP_003543906.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|255560374|ref|XP_002521202.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] gi|223539567|gb|EEF41154.1| translation initiation factor 2b, delta subunit, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|356567176|ref|XP_003551797.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|356573663|ref|XP_003554977.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Glycine max] Back     alignment and taxonomy information
>gi|449440905|ref|XP_004138224.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] gi|449477110|ref|XP_004154932.1| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359490928|ref|XP_002275165.2| PREDICTED: translation initiation factor eIF-2B subunit delta-like [Vitis vinifera] gi|297734159|emb|CBI15406.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query653
TAIR|locus:2159868642 AT5G38640 "AT5G38640" [Arabido 0.787 0.800 0.681 1.7e-198
UNIPROTKB|Q2QM52607 LOC_Os12g42260 "Initiation fac 0.745 0.802 0.625 2e-162
TAIR|locus:2028501666 AT1G48970 "AT1G48970" [Arabido 0.790 0.774 0.565 3.6e-161
TAIR|locus:2051779333 AT2G44070 "AT2G44070" [Arabido 0.496 0.972 0.753 4e-129
UNIPROTKB|A8JGW6434 EIF2B "Eukaryotic initiation f 0.537 0.808 0.508 5.4e-94
ZFIN|ZDB-GENE-030131-955541 eif2b4 "eukaryotic translation 0.641 0.774 0.463 5.5e-93
UNIPROTKB|F1NDW0503 EIF2B4 "Uncharacterized protei 0.571 0.741 0.490 5.1e-90
UNIPROTKB|F1PAD0525 EIF2B4 "Uncharacterized protei 0.571 0.710 0.468 2.1e-86
UNIPROTKB|E2R8W5546 EIF2B4 "Uncharacterized protei 0.571 0.683 0.468 3.5e-86
DICTYBASE|DDB_G0290759619 eif2b4 "eIF2B GDP-GTP exchange 0.600 0.633 0.427 4.9e-85
TAIR|locus:2159868 AT5G38640 "AT5G38640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1786 (633.8 bits), Expect = 1.7e-198, Sum P(2) = 1.7e-198
 Identities = 359/527 (68%), Positives = 412/527 (78%)

Query:   131 ASSFPGGGFEXXXXXXXXXXXXXXGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKP 190
             ASS PG G +              GLTTVSVV +PPG+SE A G   +EVQSD+    KP
Sbjct:   125 ASSLPGIGMDSMAAAKSSSVPAS-GLTTVSVVTMPPGLSEKASG---MEVQSDQ---KKP 177

Query:   191 LKEKTSXXXXXXXXXXXXXXXXXXXXXGIKT-P---AATALANAKPTKSTRPSPQRNDSP 246
             LKEKT+                     G K  P   A+ A  + K  K  + + Q+ND  
Sbjct:   178 LKEKTTKAERRAIQEAQRAAKAAAKADGGKVAPVSSASVASTSVKAAKPAKATSQKNDVA 237

Query:   247 VVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRVQKLKKRSVVKPTEARNRVELFRHL 306
             V   A+EKKGG    EKDRKKD PHPRMQYDD+SRV K K+R+VVK TEA+NRVELFRHL
Sbjct:   238 VATGAAEKKGGPS--EKDRKKDAPHPRMQYDDESRVVKAKRRAVVKQTEAKNRVELFRHL 295

Query:   307 PQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYS 366
             PQYEHGTQLP L++KFFQLD +HPAVYKVGLQYLSGDI GGNARCIAMLQAFQE ++DYS
Sbjct:   296 PQYEHGTQLPDLETKFFQLDPMHPAVYKVGLQYLSGDISGGNARCIAMLQAFQEVVKDYS 355

Query:   367 TPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLH 426
             TPP K+L+RD+TAKISSYVSFLI+CRPLS+SMGNAIRF+K++IAK+PI+LSESEAKATL 
Sbjct:   356 TPPEKSLNRDMTAKISSYVSFLIECRPLSISMGNAIRFVKNRIAKLPITLSESEAKATLQ 415

Query:   427 SDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIV 486
             SDIERFINEKII+AD VIVKHAVTKIRDGDVLLTYGS +AVEM++ HAHEL K+FRV++V
Sbjct:   416 SDIERFINEKIIVADTVIVKHAVTKIRDGDVLLTYGSPTAVEMVILHAHELRKKFRVLVV 475

Query:   487 DSRPKHEXXXXXXXXXXXXXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTA 546
             DSRPK E             +CTYTHINAISYI+HEVT+VFLGASSVLSNGTV SRVGTA
Sbjct:   476 DSRPKLEGQLLLRRLIKRGINCTYTHINAISYIMHEVTKVFLGASSVLSNGTVYSRVGTA 535

Query:   547 CVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKS 606
             CVAMVA  F +PVLVCCEAYKFHERVQLDSICSNELGDP++IS+V GREDIN+LDG   +
Sbjct:   536 CVAMVANAFRVPVLVCCEAYKFHERVQLDSICSNELGDPNAISEVHGREDINYLDGLTNN 595

Query:   607 ENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQLWI 653
              NLQ LNL+YDATPSDY+S+IITDYGM+PPTSVPVIVREY +  L +
Sbjct:   596 ANLQFLNLMYDATPSDYISMIITDYGMVPPTSVPVIVREYQKEHLLV 642
GO:0003743 "translation initiation factor activity" evidence=ISS;IBA
GO:0005085 "guanyl-nucleotide exchange factor activity" evidence=IBA
GO:0005525 "GTP binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS;IBA
GO:0006413 "translational initiation" evidence=ISS
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0045947 "negative regulation of translational initiation" evidence=IBA
GO:0050790 "regulation of catalytic activity" evidence=IBA
UNIPROTKB|Q2QM52 LOC_Os12g42260 "Initiation factor 2 subunit family protein, expressed" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2028501 AT1G48970 "AT1G48970" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2051779 AT2G44070 "AT2G44070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|A8JGW6 EIF2B "Eukaryotic initiation factor" [Chlamydomonas reinhardtii (taxid:3055)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-955 eif2b4 "eukaryotic translation initiation factor 2B, subunit 4 delta" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDW0 EIF2B4 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1PAD0 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8W5 EIF2B4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0290759 eif2b4 "eIF2B GDP-GTP exchange factor" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 2e-86
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 3e-72
PRK08535310 PRK08535, PRK08535, translation initiation factor 1e-41
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 7e-38
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 4e-27
PRK08335275 PRK08335, PRK08335, translation initiation factor 8e-19
COG0182346 COG0182, COG0182, Predicted translation initiation 7e-13
PRK06372253 PRK06372, PRK06372, translation initiation factor 4e-12
PRK05772363 PRK05772, PRK05772, translation initiation factor 9e-12
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 2e-11
PRK06036339 PRK06036, PRK06036, translation initiation factor 4e-10
PRK06371329 PRK06371, PRK06371, translation initiation factor 1e-09
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 3e-08
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 5e-06
PHA032473151 PHA03247, PHA03247, large tegument protein UL36; P 2e-05
PRK07003830 PRK07003, PRK07003, DNA polymerase III subunits ga 4e-05
PRK12323700 PRK12323, PRK12323, DNA polymerase III subunits ga 0.002
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information 
 Score =  271 bits (695), Expect = 2e-86
 Identities = 103/291 (35%), Positives = 162/291 (55%), Gaps = 13/291 (4%)

Query: 346 GGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFL 405
           G  A  IA L+     I+D  TP       +L  ++ S + FLI  RP +VS+GNAI  L
Sbjct: 4   GSPAIAIAALEGLLLVIQDARTPT----VAELKEQLRSAIEFLISARPTAVSLGNAIDRL 59

Query: 406 KSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSS 465
              I+++  S    EAK +L    + FI+E I  A R I   A   I+DGD +LT+ +S 
Sbjct: 60  LRIISELHSSSDVEEAKESLIEAADEFIDE-IEEARRKIGAIAAELIKDGDTILTHCNSG 118

Query: 466 AVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTR 525
            V  +L+ AH+ GK+FRV++ +SRP+ +G+L  + LV+ G+  T    +A+ Y++ EV +
Sbjct: 119 TVLGVLRAAHKEGKRFRVIVTESRPRLQGRLTAKELVQAGIPVTLITDSAVGYVMQEVDK 178

Query: 526 VFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDP 585
           V +GA  +L+NG + +++GT  +A++A   ++P  V  E YKF  R  LD     E  DP
Sbjct: 179 VIVGADRILANGGIANKIGTYQLALLAKAHNVPFYVVAETYKFDPRFPLDEDIFIEERDP 238

Query: 586 DSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPP 636
           + +        I         ENL++ N  +D TP + ++LIIT+ G++PP
Sbjct: 239 EEV-LYRTGVRIA-------PENLKVRNPAFDYTPPELITLIITEVGVLPP 281

This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes, initiation factor 2B subunits 1 and 2 from archaebacteria and some proteins of unknown function from prokaryotes. Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. Members of this family have also been characterized as 5-methylthioribose- 1-phosphate isomerases, an enzyme of the methionine salvage pathway. The crystal structure of Ypr118w, a non-essential, low-copy number gene product from Saccharomyces cerevisiae, reveals a dimeric protein with two domains and a putative active site cleft. Length = 281
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional Back     alignment and domain information
>gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated Back     alignment and domain information
>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 653
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
COG0182346 Predicted translation initiation factor 2B subunit 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.59
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.55
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.43
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 97.34
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 97.33
PRK13509251 transcriptional repressor UlaR; Provisional 97.29
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 97.17
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 97.04
PRK10411240 DNA-binding transcriptional activator FucR; Provis 96.72
COG1349253 GlpR Transcriptional regulators of sugar metabolis 95.83
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 95.58
PLN02384264 ribose-5-phosphate isomerase 95.06
PRK13978228 ribose-5-phosphate isomerase A; Provisional 93.96
KOG0259 447 consensus Tyrosine aminotransferase [Amino acid tr 91.15
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 90.42
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 87.49
COG0426388 FpaA Uncharacterized flavoproteins [Energy product 85.57
PF02254116 TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg 85.21
PRK04311 464 selenocysteine synthase; Provisional 80.99
cd00293130 USP_Like Usp: Universal stress protein family. The 80.93
TIGR00474 454 selA seryl-tRNA(sec) selenium transferase. In bact 80.72
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.6e-109  Score=885.90  Aligned_cols=536  Identities=52%  Similarity=0.807  Sum_probs=441.3

Q ss_pred             CCCCCCCcccccCCCC-CCCCCCCCCCC---CCCCCCCCCCCCCCccccccCCCCCCccccCCCCCcchhhhhhhccCCC
Q 006256           48 SSPGNFLSPVMIPPPR-HPSSSLLPRLP---HSPSDAFPPPSPTTTTTTTSLGDFSDDVTAASSPPSAAAAAARVRGRGS  123 (653)
Q Consensus        48 ~~~~~~~~~v~~p~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  123 (653)
                      ++.+|+++|+|||++| |.+|.+...+-   ..+.....+..+ .       +.+.  ++...++..+. .         
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~kk~~k~~~~ep~~~-~-------~~~~--~p~~~t~s~~~-~---------   74 (556)
T KOG1467|consen   15 DKLKELPEPANNPVARLGTIDQVKSERNAKKVAKQAAKEPAQG-E-------DKNA--EPKDLTASAKQ-A---------   74 (556)
T ss_pred             chhhhccccccCccccccchHHHHHHHHHhhcCccccccccCC-C-------cccc--Ccccccccccc-c---------
Confidence            4899999999999999 88888876441   001111111110 0       1111  11111111111 1         


Q ss_pred             cccccccccCCCCCCCCCCCCcCCCCCCCCCCCeeeeeecCCCCCcCCCCCCcceeeccccccCCCcchhhccHHHHHHH
Q 006256          124 SVKQQGAASSFPGGGFEVPPSVKAPSSVPASGLTTVSVVKLPPGISENAGGSVSVEVQSDRALNSKPLKEKTSKAERRAI  203 (653)
Q Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kAERRa~  203 (653)
                         ...+..++|+||+|++...+++   .+                    .++..+.+....+..+..+.+.|+||||++
T Consensus        75 ---~~~~~~s~~~~~~e~t~a~~a~---~~--------------------a~~s~~~~p~~~~~~ka~~~~~t~a~~~a~  128 (556)
T KOG1467|consen   75 ---RVAVKASLPKGGAELTVANKAA---AA--------------------AGSSATQSPKKEKPPKAGLAVPTRAERKAI  128 (556)
T ss_pred             ---ccchhhcccCCcceecccccch---hh--------------------hccccccCCcccCCcccccccccHHHHhhH
Confidence               1456789999999999773222   11                    111223333444556778889999999999


Q ss_pred             HHHHHHHHHHHhhcCCCCcchhhcccCCCCCCCCCCC-CCCCCCcccccccccCCCCcccccccCCCCCCCcccCcHHHH
Q 006256          204 QEAQRAAKAAAKAEGIKTPAATALANAKPTKSTRPSP-QRNDSPVVVAASEKKGGDRSVEKDRKKDVPHPRMQYDDKSRV  282 (653)
Q Consensus       204 QEaqRAaKaa~k~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~dd~~~~  282 (653)
                      ||++||+|+|+|++++..........+.+..+...|. .|+..+      ...+..-+.   ++.++++|.+|+++..+.
T Consensus       129 ~Ea~~a~K~a~kg~~~~~a~~~~~~kA~~s~a~~~P~~~k~~~p------~~t~~~~~~---~~~~~~~pq~q~kt~~~~  199 (556)
T KOG1467|consen  129 QEAKRAAKTAEKGEGARKAQVIERAKANASTAPAIPAVKKNALP------VTTSVDQAL---KRRAVQNPQNQAKTLASA  199 (556)
T ss_pred             HHHHHHHHHhhhcccccccccccccccCcccccCCCcccccccc------ccccccchH---Hhhcccchhhhhhhhccc
Confidence            9999999999999986421111111111111111122 222211      111111111   577889999999887765


Q ss_pred             HHhhhccccccccccCcccccccCCcceecccCcchhhhhhcccchhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHH
Q 006256          283 QKLKKRSVVKPTEARNRVELFRHLPQYEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAI  362 (653)
Q Consensus       283 ~k~~~~~~~~~~~~~~~v~lf~hLP~~~~~~~~~~~~~~~~ai~~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI  362 (653)
                      . +.|+.|+.+     ++.||+||||+.+..      ..|..+..|||||++||+||+.|+|+|+|+|||+||.+|+++|
T Consensus       200 ~-~~rk~V~~~-----~v~lf~hL~q~~~~t------t~f~~~~~IHPAv~~Lglq~a~~kI~GsnaRCIa~L~afqevi  267 (556)
T KOG1467|consen  200 S-ASRKAVASQ-----KVSLFTHLPQYDRAT------TQFIFLDSIHPAVLRLGLQYALGKISGSNARCIAMLQAFQEVI  267 (556)
T ss_pred             C-ccccccccc-----eehhhhhhhHhhccc------ccccccccccHHHHHHHHHHhhcccCCccHHHHHHHHHHHHHH
Confidence            5 777777755     899999999999875      2355666799999999999999999999999999999999999


Q ss_pred             HhcCCCCccchHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006256          363 RDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADR  442 (653)
Q Consensus       363 ~dy~~p~~~~~~rdL~~~L~~~i~~L~~aRPtsVsmgNAIr~lk~~I~~~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~  442 (653)
                      +||++|++++|.|||+.+|+.++.||.+|||++++|||||||||+.|..++.+..+.|+|+.|++.|+.||+|+|..|++
T Consensus       268 ~Dy~TP~~ktlsrdLt~~i~~qv~~L~~cRPLs~SmgNAiRflK~eI~~L~~s~~e~eaKe~L~~~I~~~i~eki~~A~q  347 (556)
T KOG1467|consen  268 KDYTTPPEKTLSRDLTAAISPQVSFLTQCRPLSISMGNAIRFLKNEISKLPISLSESEAKEELQSDIDRFIAEKIILADQ  347 (556)
T ss_pred             HhccCCCccccchhhHhhhhhHHHHHhhcCCccchhhHHHHHHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhccCCCEEEEeCChHHHHHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhh
Q 006256          443 VIVKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHE  522 (653)
Q Consensus       443 ~Ia~~a~~~I~dGdvILT~g~Ss~Ve~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~  522 (653)
                      .|++++.++|+|||+|||||+|++|+.+|.+||+.|++|+|+|+||||.+||++|++.|.+.||+|||+++++++|+|.+
T Consensus       348 aI~q~a~~KI~dgdviltyg~s~vV~~ill~A~~~~k~frVvVVDSRP~~EG~~~lr~Lv~~GinctYv~I~a~syim~e  427 (556)
T KOG1467|consen  348 AISQHAVTKIQDGDVLLTYGSSSVVNMILLEAKELGKKFRVVVVDSRPNLEGRKLLRRLVDRGINCTYVLINAASYIMLE  427 (556)
T ss_pred             HHHHHHHHHhhcCCEEEEecchHHHHHHHHHHHHhCcceEEEEEeCCCCcchHHHHHHHHHcCCCeEEEEehhHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccEEEEcceeEecCCCeecccchHHHHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCC
Q 006256          523 VTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDG  602 (653)
Q Consensus       523 Vd~VllGAdaIlaNG~V~NKiGT~~lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~  602 (653)
                      |++|||||++|++||.||+|+||+++||+|++|||||+||||+|||++|+|+|++++||++||+++..++|+.+...|.+
T Consensus       428 vtkvfLGahailsNG~vysR~GTa~valvAna~nVPVlVCCE~yKF~eRvQlDsi~~NEL~dpn~l~~v~g~~~~~~L~~  507 (556)
T KOG1467|consen  428 VTKVFLGAHAILSNGAVYSRVGTACVALVANAFNVPVLVCCEAYKFHERVQLDSIVSNELGDPNALQEVRGREDKVALAG  507 (556)
T ss_pred             cceeeechhhhhcCcchhhhcchHHHHHHhcccCCCEEEEechhhhhhhhhhhhhhhcccCChhhhhhccCcchhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999767778999


Q ss_pred             ccCCCCcccccccccccCCCCccEEEeCCCCCCCCCHHHHHHHhhcCC
Q 006256          603 WDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREYGRGQ  650 (653)
Q Consensus       603 ~~~~~~l~v~Np~FDvTPpeLIt~IITE~Gvi~PssV~~ilrey~~~~  650 (653)
                      |....+++++|++||+||||||++||||+|++||++||+|||+|...+
T Consensus       508 wqn~~~L~~lnl~YD~TPpelIs~vVTe~g~lp~TSVPvilr~~~~~~  555 (556)
T KOG1467|consen  508 WQNNANLKFLNLMYDVTPPELISAVVTELGMLPPTSVPVILREKKLTD  555 (556)
T ss_pred             cccccccchhheeeccCcHHHHHHHHhhccccCCccchHHHhhhhccc
Confidence            999999999999999999999999999999999999999999998765

>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion] Back     alignment and domain information
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus Back     alignment and domain information
>PRK04311 selenocysteine synthase; Provisional Back     alignment and domain information
>cd00293 USP_Like Usp: Universal stress protein family Back     alignment and domain information
>TIGR00474 selA seryl-tRNA(sec) selenium transferase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-27
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-27
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 3e-26
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 4e-26
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 4e-26
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 8e-25
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 6e-13
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 1e-09
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 2e-09
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 6e-07
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 2e-06
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure 
Iteration: 1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 76/261 (29%), Positives = 132/261 (50%), Gaps = 12/261 (4%)
Query: 387 FLIDCRPLSVSMGNAIRFLKSQIAKIPISLSE--SEAKATLHSDIERFINEKIILADRVI 444
            L + RP +VS+ NA+R++  +  KI  S      + +  + +  + FI+      +R I
Sbjct: 74  ILFETRPTAVSLPNALRYVMHR-GKIAYSSGADLEQLRFVIINAAKEFIHNSEKALER-I 131
Query: 445 VKHAVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEXXXXXXXXXXX 504
            +    +I DGDV++T+  S A   +++ A E GK  +V++ ++RPK +           
Sbjct: 132 GEFGAKRIEDGDVIMTHSHSKAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASY 191
Query: 505 XXSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCE 564
                Y   +A  + +    +V +GA S+  NG V +++GTA +A+ A    +  ++  E
Sbjct: 192 GIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTALIALTAKEHRVWTMIAAE 251
Query: 565 AYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYV 624
            YKFH    L  +   E+ DP  +  +P  E    L  W K  N+++ N  +D TP +YV
Sbjct: 252 TYKFHPETMLGQLVEIEMRDPTEV--IPEDE----LKTWPK--NIEVWNPAFDVTPPEYV 303
Query: 625 SLIITDYGMIPPTSVPVIVRE 645
            +IIT+ G+IPP +   I+RE
Sbjct: 304 DVIITERGIIPPYAAIDILRE 324
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query653
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 6e-88
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 5e-34
3a11_A338 Translation initiation factor EIF-2B, delta subun; 2e-33
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 3e-17
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 7e-17
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 5e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 2e-12
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 6e-05
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
 Score =  276 bits (707), Expect = 6e-88
 Identities = 70/298 (23%), Positives = 131/298 (43%), Gaps = 15/298 (5%)

Query: 349 ARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFLIDCRPLSVSMGNAIRFLKSQ 408
           A  +A ++   E ++       + L  +LT+ I +          ++VS G  +      
Sbjct: 21  ASAVAAIRTLLEFLKRDKGETIQGLRANLTSAIETLCGV---DSSVAVSSGGELFLRFIS 77

Query: 409 IAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAVE 468
           +A +  S   S+ K  +    E F+  +I L+   I     T I+DG  +LT+  S  V 
Sbjct: 78  LASLEYS-DYSKCKKIMIERGELFL-RRISLSRNKIADLCHTFIKDGATILTHAYSRVVL 135

Query: 469 MILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFL 528
            +L+ A    K+F V + +S+P   GK + + L    +  T     A+ YI+ +   V +
Sbjct: 136 RVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGYIMEKADLVIV 195

Query: 529 GASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSI 588
           GA  V+ NG + +++GT  +A+ A   + P  V  E++KF     L     N+   PD  
Sbjct: 196 GAEGVVENGGIINKIGTNQMAVCAKAQNKPFYVVAESFKFVRLFPL-----NQQDVPDKF 250

Query: 589 SKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLIITDYGMIPPTSVPVIVREY 646
                +   + L      ++L+  +   D T    ++L+ TD G++ P++V   + + 
Sbjct: 251 -----KYKADTLKVAQTGQDLKEEHPWVDYTAPSLITLLFTDLGVLTPSAVSDELIKL 303
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 99.88
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.08
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 97.86
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.8
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.77
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 97.65
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.44
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 97.43
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.36
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.2
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 97.17
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 96.74
4gmk_A228 Ribose-5-phosphate isomerase A; D-ribose-5-phospha 91.65
3ixq_A226 Ribose-5-phosphate isomerase A; structural genomic 87.58
2hj0_A519 Putative citrate lyase, ALFA subunit; alpha beta p 81.37
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
Probab=100.00  E-value=3.4e-71  Score=586.98  Aligned_cols=313  Identities=25%  Similarity=0.398  Sum_probs=275.9

Q ss_pred             ceecccCcchhhhhhcccchhHHHHHHHHhhhcCcccchHHHHHHHHHHHHHHHHhcCCCCccchHHHHHHHHHHHHHHH
Q 006256          309 YEHGTQLPVLQSKFFQLDTLHPAVYKVGLQYLSGDICGGNARCIAMLQAFQEAIRDYSTPPAKTLSRDLTAKISSYVSFL  388 (653)
Q Consensus       309 ~~~~~~~~~~~~~~~ai~~mhPAI~~LGl~~~~~~i~Gsnaraiaml~a~~~vI~dy~~p~~~~~~rdL~~~L~~~i~~L  388 (653)
                      -.+|..|.++++++.+|+.|              +++|+.+.+++.+.+|..+++.+.+.    ...+|.+.|+.++++|
T Consensus        14 ~~~~~~~~~~~~~~~aI~~m--------------~VrGApai~iaaa~~l~~~~~~~~~~----~~~~l~~~l~~~~~~L   75 (338)
T 3a11_A           14 GRHMAVVKEVLEIAEKIKNM--------------EIRGAGKIARSAAYALQLQAEKSKAT----NVDEFWKEMKQAAKIL   75 (338)
T ss_dssp             -----CCSHHHHHHHHHHTC--------------SSCSHHHHHHHHHHHHHHHHHHCCCC----SHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCHHHHHHHHHhC--------------cEeCcHHHHHHHHHHHHHHHHhccCC----CHHHHHHHHHHHHHHH
Confidence            34566777777766665554              56666666777777777777766542    3578999999999999


Q ss_pred             HhcCCccccHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCEEEEeCChHHH
Q 006256          389 IDCRPLSVSMGNAIRFLKSQIAK-IPISLSESEAKATLHSDIERFINEKIILADRVIVKHAVTKIRDGDVLLTYGSSSAV  467 (653)
Q Consensus       389 ~~aRPtsVsmgNAIr~lk~~I~~-~~~~~~~~eaK~~L~e~I~~fi~E~i~~a~~~Ia~~a~~~I~dGdvILT~g~Ss~V  467 (653)
                      .++|||++||+|+++++++.+.+ .....+.+++|+.+++.+++|++| +..+++.|+++|+++|.+|++|||||||.+|
T Consensus        76 ~~aRPtav~L~~a~~~~~~~i~~~~~~~~~~~~~k~~l~~~a~~~~~e-~~~~~~~I~~~g~~~I~~g~~ILTh~~S~tv  154 (338)
T 3a11_A           76 FETRPTAVSLPNALRYVMHRGKIAYSSGADLEQLRFVIINAAKEFIHN-SEKALERIGEFGAKRIEDGDVIMTHCHSKAA  154 (338)
T ss_dssp             HTTCTTCSHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHTTCCTTCEEEECSCCHHH
T ss_pred             HHhCCChHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhCCCCEEEEeCCcHHH
Confidence            99999999999999999998864 222346789999999999999998 4568999999999999999999999999999


Q ss_pred             HHHHHHHHHcCCeeEEEEeCCCCCchHHHHHHHHHhCCCCEEEEccchHHHHhhhccEEEEcceeEecCCCeecccchHH
Q 006256          468 EMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLSCTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTAC  547 (653)
Q Consensus       468 e~vL~~A~e~gk~f~ViV~ESRP~~EG~~La~eL~~~GI~vT~I~DsAv~~iM~~Vd~VllGAdaIlaNG~V~NKiGT~~  547 (653)
                      .++|+.|+++|++|+|||+||||++||+.++++|.+.||+||||+|||++|+|++||+||||||+|++||+++||+|||+
T Consensus       155 l~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Dsa~~~~M~~Vd~VivGAd~V~anG~v~NKiGT~~  234 (338)
T 3a11_A          155 ISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDSAARHYMKMTDKVVMGADSITVNGAVINKIGTAL  234 (338)
T ss_dssp             HHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGGGTTTTGGGCSEEEECCSEECTTSCEEEETTHHH
T ss_pred             HHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehHHHHHHHHhCCEEEECccEEecCCCEeecccHHH
Confidence            99999999999999999999999999988889999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhCCCCeeeeccccccccccccCcccccccCCcccccccCCCcccccCCCccCCCCcccccccccccCCCCccEE
Q 006256          548 VAMVAYGFHIPVLVCCEAYKFHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI  627 (653)
Q Consensus       548 lAl~Ak~~~VPVyV~aetyKf~~~~~~ds~~~nElrdp~ev~~~~g~~~~~~l~~~~~~~~l~v~Np~FDvTPpeLIt~I  627 (653)
                      +|++||+||||||||||+|||++.++.|..++||+|+|+|++.+ |..     ..|  +++++++||+|||||++|||+|
T Consensus       235 lAl~Ak~~~vPfyV~a~~~k~d~~~~~g~~i~iE~r~~~ev~~~-g~~-----~~w--~~~v~v~NPaFDvTP~~lIt~i  306 (338)
T 3a11_A          235 IALTAKEHRVWTMIAAETYKFHPETMLGQLVEIEMRDPTEVIPE-DEL-----KTW--PKNIEVWNPAFDVTPPEYVDVI  306 (338)
T ss_dssp             HHHHHHHTTCEEEEECCGGGBCSCCSSSSCCCCCBCCGGGTSCH-HHH-----TTS--CTTEEECCBSEEEECGGGCSEE
T ss_pred             HHHHHHHcCCCEEEecccceecccCCCCcccccccCCHHHcccc-ccc-----ccC--CCCceecCcceeccCHHHcCEE
Confidence            99999999999999999999999999999999999999999865 321     113  5789999999999999999999


Q ss_pred             EeCCCCCCCCCHHHHHHHhhc
Q 006256          628 ITDYGMIPPTSVPVIVREYGR  648 (653)
Q Consensus       628 ITE~Gvi~PssV~~ilrey~~  648 (653)
                      |||.|+++|++|+.+|++||.
T Consensus       307 ITE~Gv~~p~~v~~~L~e~y~  327 (338)
T 3a11_A          307 ITERGIIPPYAAIDILREEFG  327 (338)
T ss_dssp             EETTEEECGGGHHHHHHHHHC
T ss_pred             ecCCCccCchhHHHHHHHHhC
Confidence            999999999999999999996
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>4gmk_A Ribose-5-phosphate isomerase A; D-ribose-5-phosphate isomerase family, ribose 5-phosphate isomerisation; 1.72A {Lactobacillus salivarius} Back     alignment and structure
>3ixq_A Ribose-5-phosphate isomerase A; structural genomics, pentose phosphate pathway, carbon fixation, NPPSFA; HET: PGO; 1.78A {Methanocaldococcus jannaschii} Back     alignment and structure
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 653
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 2e-49
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 1e-47
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 1e-42
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 1e-35
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 1e-35
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Putative eIF-2B subunit 2-like protein PH0440
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =  171 bits (434), Expect = 2e-49
 Identities = 65/253 (25%), Positives = 110/253 (43%), Gaps = 33/253 (13%)

Query: 388 LIDCRPLSVSMGNAIRFLKSQIAKIPISLSESEAKATLHSDIERFINEKIILADRVIVKH 447
           ++   P   S+ N  RF+             +  +  L S    F+   +  A R +   
Sbjct: 54  VVKVNPSMASLYNLARFI-----------PVTNRRDILKSRALEFLRR-MEEAKRELASI 101

Query: 448 AVTKIRDGDVLLTYGSSSAVEMILQHAHELGKQFRVVIVDSRPKHEGKLLLRRLVRKGLS 507
               I DGDV++T+  SS V  I++ A E  K+F+V++ +S P +EG  L R L   G+ 
Sbjct: 102 GAQLIDDGDVIITHSFSSTVLEIIRTAKERKKRFKVILTESSPDYEGLHLARELEFSGIE 161

Query: 508 CTYTHINAISYIIHEVTRVFLGASSVLSNGTVCSRVGTACVAMVAYGFHIPVLVCCEAYK 567
                   +     E +   +GA  +  +G V ++ GT  +A+  +   IP  V  E YK
Sbjct: 162 FEVITDAQMGLFCREASIAIVGADMITKDGYVVNKAGTYLLALACHENAIPFYVAAETYK 221

Query: 568 FHERVQLDSICSNELGDPDSISKVPGREDINHLDGWDKSENLQLLNLIYDATPSDYVSLI 627
           FH  ++   +   E            R+ I          N+++ N+++D TP  YV  I
Sbjct: 222 FHPTLKSGDVMLME------------RDLIR--------GNVRIRNVLFDVTPWKYVRGI 261

Query: 628 ITDYGMI-PPTSV 639
           IT+ G++ PP  +
Sbjct: 262 ITELGIVIPPRDI 274
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query653
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.94
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.76
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.54
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure