Citrus Sinensis ID: 006281
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 652 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FMU2 | 634 | Pentatricopeptide repeat- | yes | no | 0.967 | 0.995 | 0.553 | 0.0 | |
| Q9FIT7 | 974 | Pentatricopeptide repeat- | no | no | 0.711 | 0.476 | 0.247 | 7e-41 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.808 | 0.698 | 0.237 | 3e-39 | |
| Q9FMF6 | 730 | Pentatricopeptide repeat- | no | no | 0.868 | 0.775 | 0.249 | 2e-38 | |
| Q9SR00 | 602 | Pentatricopeptide repeat- | no | no | 0.677 | 0.734 | 0.253 | 1e-33 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.723 | 0.631 | 0.243 | 6e-33 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.613 | 0.539 | 0.240 | 1e-32 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.737 | 0.487 | 0.226 | 1e-32 | |
| Q9LFC5 | 729 | Pentatricopeptide repeat- | no | no | 0.716 | 0.640 | 0.227 | 7e-32 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.592 | 0.623 | 0.260 | 7e-32 |
| >sp|Q9FMU2|PP380_ARATH Pentatricopeptide repeat-containing protein At5g14080 OS=Arabidopsis thaliana GN=At5g14080 PE=2 SV=2 | Back alignment and function desciption |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/634 (55%), Positives = 484/634 (76%), Gaps = 3/634 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
+LS F+++LC GH A++LLR L H+ +HV+LLK +ADA+EVE+ I H++WI+E
Sbjct: 540 VLSEFVLNLCSNGHSGEASQLLRE-REHLEHTGAHVVLLKCVADAKEVEIGIRHMQWIKE 598
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
SP+++ IS++L AS SSS P+ IL + A++
Sbjct: 599 VSPSLVHTISSDLLASFCSSSDPDSILPFIRAIE 632
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 116/469 (24%), Positives = 228/469 (48%), Gaps = 5/469 (1%)
Query: 86 SYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV 145
+Y ++ L +++ S+L ++ ++LD+ Y +I L++G+N A + +E+
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338
Query: 146 KFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205
+ +I P + + + V++ +G ++ A +FD M G+ + I +C +
Sbjct: 339 VSHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEGYCREKNV 398
Query: 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265
Q +L E++KR N +I+ ++ G C ++ A+ ++ E+ C+P+ + Y
Sbjct: 399 RQGYELLVEMKKR-NIVISPYTYGT-VVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYT 456
Query: 266 IVAEEFKLMGSVFEREV-VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324
+ + F L S F + VLK+ ++ G+AP Y I+GL +R+ EA+ +V
Sbjct: 457 TLIKTF-LQNSRFGDAMRVLKEMKEQGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE 515
Query: 325 GKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383
+ A I G + + + SA + M E G +P + L CK+ K E
Sbjct: 516 NGLKPNAFTYGAFISGYIEASEFASADKYVKEMRECGVLPNKVLCTGLINEYCKKGKVIE 575
Query: 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443
Y+ + D ++Y V+++ L + ++ +A + +EM+ KG+ PDV Y L+
Sbjct: 576 ACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLIN 635
Query: 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
+ ++ A ++D+M G + N+ YN+L+ F GEIE A L M KG+ P
Sbjct: 636 GFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHP 695
Query: 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552
+A TY ++++G C+ +L AF +F++ ++ + +T + CR
Sbjct: 696 NAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVDGCCR 744
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 163 bits (413), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 130/548 (23%), Positives = 260/548 (47%), Gaps = 21/548 (3%)
Query: 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRF 124
S AL FN AS++PNF+ P Y IL L S + + +L+ +K ++ + +S +
Sbjct: 64 SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123
Query: 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIG--PE--ICNSLLAVLASDGYIDNALKMFD-- 178
+I S Q + + SV V + ++ G P+ N +L +L DG N+LK+ +
Sbjct: 124 LIESYAQFELQDEILSV---VDWMIDEFGLKPDTHFYNRMLNLLV-DG---NSLKLVEIS 176
Query: 179 --EMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236
+MS G++ F V I C +L + ML+++ ++ ++ G+
Sbjct: 177 HAKMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSY--GLVPDEKTFTTVMQGY 234
Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFER-EVVLKKKRKLGVAPR 295
+ ++ A ++ +++ C ++ ++ F G V + + + + G P
Sbjct: 235 IEEGDLDGALRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 296 TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFN 354
+ + GL + A E+ +V++ + D N++I + + + + A+ +
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLD 354
Query: 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG 414
MI + P T + L LCK N+ +E E+ +VL++ D+ ++N ++ LC +
Sbjct: 355 QMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTR 414
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
R A + +EM+ KG +PD YN L+++ C + L A + QM SGC+ ++ TYN
Sbjct: 415 NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYN 474
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534
LI F + + A +F M GV+ ++ TY +L++GLC+ ++ A ++ ++ +
Sbjct: 475 TLIDGFCKANKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIME 534
Query: 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD--SHVILLKSLADAREVEMA 592
+ ++ + CR G A +++ ++S+ D ++ L+ L A VE+A
Sbjct: 535 GQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVA 594
Query: 593 IEHIKWIQ 600
+ ++ IQ
Sbjct: 595 SKLLRSIQ 602
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May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 155/622 (24%), Positives = 266/622 (42%), Gaps = 56/622 (9%)
Query: 24 TRPARKWTPLLEQTLHQLGLRDS---LSPSLVARVINPYLLTHHSLALGFFNWASQQPNF 80
T A +W LL + LR+S ++P + +++ L + S ++ F+W Q +
Sbjct: 51 TDSANEWEKLL-KPFDLDSLRNSFHKITPFQLYKLLE--LPLNVSTSMELFSWTGSQNGY 107
Query: 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL----IQGKNTQ 136
HS Y ++ L + + ID +L Q+K I S++ I+ G+ T+
Sbjct: 108 RHSFDVYQVLIGKLGANGEFKTIDRLLIQMKDEGIVFKESLFISIMRDYDKAGFPGQTTR 167
Query: 137 KAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196
+ N ++CE N +L +L S A +F +M R + + FGV +
Sbjct: 168 LMLEMRN--VYSCEPTFKSY-NVVLEILVSGNCHKVAANVFYDMLSRKIPPTLFTFGVVM 224
Query: 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRE 256
FC ++ LS+L ++ K + + SVI +IH K RV EA ++L+E+ +
Sbjct: 225 KAFCAVNEIDSALSLLRDMTK--HGCVPNSVIYQTLIHSLSKCNRVNEALQLLEEMFLMG 282
Query: 257 CKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316
C PD + V + E ++ + G AP Y + GL R+ AK
Sbjct: 283 CVPDAETFNDVILGLCKFDRINEAAKMVNRMLIRGFAPDDITYGYLMNGLCKIGRVDAAK 342
Query: 317 ELGEVIVSGKFTIDDDVLNALI-------------------GSVSSIDPRSAIVF----- 352
+L I + I + +++ + G V + +++++
Sbjct: 343 DLFYRIPKPEIVIFNTLIHGFVTHGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKE 402
Query: 353 ---------FNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403
+ M KG P + + + L CK K DE V +SA+ + +
Sbjct: 403 GLVGLALEVLHDMRNKGCKPNVYSYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGF 462
Query: 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463
N ++S C R+ EA + +EM RKG PDV +NSL+ C D ++ A L M +
Sbjct: 463 NCLISAFCKEHRIPEAVEIFREMPRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMIS 522
Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
G N TYN LI+ F GEI+ A +L + M+ +G D TY SL++GLC+ +
Sbjct: 523 EGVVANTVTYNTLINAFLRRGEIKEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDK 582
Query: 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-----LLRGLSSDLGHSDSHVI 578
A +F K + + + + LCR G A + +LRG + D+ +S
Sbjct: 583 ARSLFEKMLRDGHAPSNISCNILINGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNS--- 639
Query: 579 LLKSLADAREVEMAIEHIKWIQ 600
L+ L A +E + + +Q
Sbjct: 640 LINGLCRAGRIEDGLTMFRKLQ 661
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760, chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/508 (25%), Positives = 214/508 (42%), Gaps = 66/508 (12%)
Query: 50 SLVARVINPYLLTHHSLALGFFNWAS--------------QQPNFTHSPLSYHSILKSLS 95
++V + NP ++ L GFF + QP+ +Y++++
Sbjct: 114 TMVRKGYNPDVILCTKLIKGFFTLRNIPKAVRVMEILEKFGQPDV----FAYNALINGFC 169
Query: 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEV-KFNCEDIGP 154
+I+ VL +++ + D+ Y +I SL A V N++ NC+ P
Sbjct: 170 KMNRIDDATRVLDRMRSKDFSPDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQ---P 226
Query: 155 EICNSLLAVLAS--DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212
+ + + A+ +G +D ALK+ DEM RG++ +
Sbjct: 227 TVITYTILIEATMLEGGVDEALKLMDEMLSRGLKPDMFTYNT------------------ 268
Query: 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFK 272
II G CK V+ AF+++ L ++ C+PD I+Y I+
Sbjct: 269 -------------------IIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDD 332
G E E ++ K P Y I L + +I EA L +++ T D
Sbjct: 310 NQGKWEEGEKLMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAY 369
Query: 333 VLNALIGSV---SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYK 389
+ LI + +D AI F MI G +P + + + LCK K+D+ +E++
Sbjct: 370 SYDPLIAAFCREGRLD--VAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFG 427
Query: 390 VLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED 449
L + SYN M S L +SG A +I EM G+DPD YNS++ CRE
Sbjct: 428 KLGEVGCSPNSSSYNTMFSALWSSGDKIRALHMILEMMSNGIDPDEITYNSMISCLCREG 487
Query: 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509
++ A +L M + ++ TYNI++ F + IE A+ + +M+ G P+ TTYT
Sbjct: 488 MVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYT 547
Query: 510 SLLEGLCQETNLQAAFEVFNKSVNHDVM 537
L+EG+ A E+ N V D +
Sbjct: 548 VLIEGIGFAGYRAEAMELANDLVRIDAI 575
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (359), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 120/493 (24%), Positives = 220/493 (44%), Gaps = 21/493 (4%)
Query: 64 HSLALGFFNWASQQPNFT--HSPLSYHSILK-SLSLSRQINAIDSVLKQVKVNKITL--- 117
+L L F NWA+ FT ++ H + K L + QI A D K + +L
Sbjct: 62 QALILKFLNWANPHQFFTLRCKCITLHILTKFKLYKTAQILAEDVAAKTLDDEYASLVFK 121
Query: 118 -----------DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL-AVLA 165
SSV+ ++ S + KA S+ + + + G N++L A +
Sbjct: 122 SLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225
S I A +F EM V + + + I FC + L++ D++ + +
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETK--GCLPN 239
Query: 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285
V +I G+CK +++++ FK+L + ++ +P+ I+Y +V G + E VL
Sbjct: 240 VVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLT 299
Query: 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSI- 344
+ + G + Y I G E +A + ++ T +LI S+
Sbjct: 300 EMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAG 359
Query: 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
+ A+ F + M +G P T + L ++ +E V + ++ N + + +YN
Sbjct: 360 NMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYN 419
Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
+++ C +G++ +A V+++MK KGL PDV Y++++ CR + A ++ +M
Sbjct: 420 ALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEK 479
Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
G + TY+ LI F E + A L+ ML G+ PD TYT+L+ C E +L+ A
Sbjct: 480 GIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKA 539
Query: 525 FEVFNKSVNHDVM 537
++ N+ V V+
Sbjct: 540 LQLHNEMVEKGVL 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 98/408 (24%), Positives = 185/408 (45%), Gaps = 8/408 (1%)
Query: 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSV 227
G +D K+ + M +G++ ++ +G I C KL + E+ ++ ++ +V
Sbjct: 295 GELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQ--GILPDTV 352
Query: 228 IAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287
+ +I GFCK + A K E+ R+ PD + Y + F +G + E + +
Sbjct: 353 VYTTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEM 412
Query: 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDP 346
G+ P + + E I G + +A + ++ + + LI G D
Sbjct: 413 FCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDL 472
Query: 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406
SA + M + G P + T +++ LCK +E V++ A D +Y +
Sbjct: 473 DSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTL 532
Query: 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC 466
+ C SG + +A +++EM KGL P + +N LM C +L +KL + M A G
Sbjct: 533 MDAYCKSGEMDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGI 592
Query: 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526
+ N T+N L+ ++ ++ A ++ +M +GV PD TY +L++G C+ N++ A+
Sbjct: 593 APNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWF 652
Query: 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL-----RGLSSD 569
+F + ++ S S + +R FL A ++ GL++D
Sbjct: 653 LFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAAD 700
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 141 bits (356), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 118/521 (22%), Positives = 227/521 (43%), Gaps = 40/521 (7%)
Query: 27 ARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTHSPLS 86
RK L Q R+ LS SLV V+ L+ S + FF WA +Q + H+
Sbjct: 116 GRKSQKFLRQ------FREKLSESLVIEVLR--LIARPSAVISFFVWAGRQIGYKHTAPV 167
Query: 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVK 146
Y++++ + + L+Q++ + D V+ + L++ +FS+ E
Sbjct: 168 YNALVDLIVRDDDEKVPEEFLQQIRDD----DKEVFGEFLNVLVRKHCRNGSFSIALEEL 223
Query: 147 FNCEDI----GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN 202
+D N L+ +D+A + EMS + F + C+
Sbjct: 224 GRLKDFRFRPSRSTYNCLIQAFLKADRLDSASLIHREMSLANLRMDGFTLRCFAYSLCKV 283
Query: 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI 262
K + L++++ + + +V +I G C+ EEA L+ +R C P+ +
Sbjct: 284 GKWREALTLVET-----ENFVPDTVFYTKLISGLCEASLFEEAMDFLNRMRATSCLPNVV 338
Query: 263 AYRIVAEEFKLMGSVFEREV-----VLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317
Y + L G + ++++ VL G P + + A +
Sbjct: 339 TYSTL-----LCGCLNKKQLGRCKRVLNMMMMEGCYPSPKIFNSLVHAYCTSGDHSYAYK 393
Query: 318 LGEVIVSGKFTIDDDVLNALIGSVSSIDPRS--------AIVFFNFMIEKGRVPTLSTLS 369
L + +V V N LIGS+ D S A ++ M+ G V +S
Sbjct: 394 LLKKMVKCGHMPGYVVYNILIGSICG-DKDSLNCDLLDLAEKAYSEMLAAGVVLNKINVS 452
Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
+ ++ LC K ++ V + + + D +Y+ ++++LC + ++ A+ + +EMKR
Sbjct: 453 SFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEMKRG 512
Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
GL DV Y ++++ C+ L+ A+K +++M GC+ N+ TY LI + + ++ A
Sbjct: 513 GLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLKAKKVSYA 572
Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
LF ML +G P+ TY++L++G C+ ++ A ++F +
Sbjct: 573 NELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFER 613
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110 OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 115/505 (22%), Positives = 236/505 (46%), Gaps = 38/505 (7%)
Query: 78 PNFTHSPLSY----HSILKSLSLSRQINAIDSVLKQVKVNKI----TLDS---------S 120
PNF H+ LS H +++S LS + + ++++ V+++ +LDS S
Sbjct: 107 PNFKHTSLSLSAMIHILVRSGRLSDAQSCLLRMIRRSGVSRLEIVNSLDSTFSNCGSNDS 166
Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
V+ +I + +Q + ++A F ++ + + CN+L+ L G+++ A ++ E+
Sbjct: 167 VFDLLIRTYVQARKLREAHEAFTLLRSKGFTVSIDACNALIGSLVRIGWVELAWGVYQEI 226
Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
S GV + + + C++ K+ +V + L +V+ E + V +I +
Sbjct: 227 SRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQ--EKGVYPDIVTYNTLISAYSSKG 284
Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
+EEAF++++ + + P Y V G + V + + G++P + YR
Sbjct: 285 LMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYR 344
Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTID---DDVLNALI--GSVSSIDPRS-----AI 350
++ EA + G+V+ + K D DV+ L+ S+ S+ RS A+
Sbjct: 345 SLLM---------EACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKAL 395
Query: 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFL 410
++FN + E G +P + L + C++ + + + D+ +YN ++ L
Sbjct: 396 MYFNSVKEAGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGL 455
Query: 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL 470
C L EA + EM + L PD L++ C+ L+ A +L+ +M ++
Sbjct: 456 CKRKMLGEADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDV 515
Query: 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
TYN L+ F +VG+I+ A ++ +M+ K + P +Y+ L+ LC + +L AF V+++
Sbjct: 516 VTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDE 575
Query: 531 SVNHDVMLARSILSTFMISLCRRGH 555
++ ++ I ++ + CR G+
Sbjct: 576 MISKNIKPTVMICNSMIKGYCRSGN 600
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 107/411 (26%), Positives = 181/411 (44%), Gaps = 25/411 (6%)
Query: 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217
N L + +A D L M G+E + I +C KL S+L K
Sbjct: 74 NRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMTIMINCYCRKKKLLFAFSVLGRAWK 133
Query: 218 --RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG 275
E I S + ++GFC RV EA ++D + + +PD + + L G
Sbjct: 134 LGYEPDTITFSTL----VNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKG 189
Query: 276 SVFEREVVLKKKRKLGVAPRTNDYREFI----------LGLIVERRICEAKELGEVIVSG 325
V E V++ + + G P Y + L L + R++ E + + +V
Sbjct: 190 RVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKM-EERNIKASVVQY 248
Query: 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV 385
ID + S D A+ FN M KG + T S+L LC K D+
Sbjct: 249 SIVIDS------LCKDGSFD--DALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGA 300
Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
++ + + + D+ +++ ++ G+L EA + EM +G+ PD YNSL++
Sbjct: 301 KMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTITYNSLIDGF 360
Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
C+E+ L A +++D M + GC ++ TY+ILI+ + + ++ +RLF + KG+ P+
Sbjct: 361 CKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNT 420
Query: 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556
TY +L+ G CQ L AA E+F + V+ V + + LC G
Sbjct: 421 ITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGEL 471
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 652 | ||||||
| 225451505 | 660 | PREDICTED: pentatricopeptide repeat-cont | 0.972 | 0.960 | 0.665 | 0.0 | |
| 296082318 | 676 | unnamed protein product [Vitis vinifera] | 0.970 | 0.936 | 0.664 | 0.0 | |
| 255543677 | 655 | pentatricopeptide repeat-containing prot | 0.978 | 0.974 | 0.669 | 0.0 | |
| 224143615 | 626 | predicted protein [Populus trichocarpa] | 0.935 | 0.974 | 0.637 | 0.0 | |
| 449490189 | 640 | PREDICTED: pentatricopeptide repeat-cont | 0.970 | 0.989 | 0.622 | 0.0 | |
| 449442054 | 635 | PREDICTED: pentatricopeptide repeat-cont | 0.963 | 0.988 | 0.620 | 0.0 | |
| 224055765 | 567 | predicted protein [Populus trichocarpa] | 0.848 | 0.975 | 0.682 | 0.0 | |
| 356561647 | 647 | PREDICTED: pentatricopeptide repeat-cont | 0.955 | 0.962 | 0.593 | 0.0 | |
| 297811525 | 634 | pentatricopeptide repeat-containing prot | 0.967 | 0.995 | 0.564 | 0.0 | |
| 30684737 | 634 | pentatricopeptide repeat-containing prot | 0.967 | 0.995 | 0.553 | 0.0 |
| >gi|225451505|ref|XP_002274670.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 870 bits (2247), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 423/636 (66%), Positives = 515/636 (80%), Gaps = 2/636 (0%)
Query: 3 MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG + LSPSLVARVI+P+LL
Sbjct: 1 MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK KI LDSSV
Sbjct: 61 HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I S I GK TQ AF +FNEV +IGP+ CNSL+A LASDG + A ++FDEM
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
H GV +++GFGVFIW+FC NA+LG LS+LDEV K S INGS+IA+LIIHG C+ R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
FI LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
E+G+I+ A LF +MLEKGV PDATTYTSLLEGLCQE ++AFEVF KSV DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
IL+TF++ +C+ G+FL A+KLL GL+ D+GHSDSHVI LK LADA E+ AIEHIKW+ +
Sbjct: 540 ILNTFILYICKEGNFLFASKLLCGLTYDVGHSDSHVIFLKYLADASEISTAIEHIKWVGD 599
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637
+ P+ML IS ELFA L+SSS PEPIL +L A+QEK
Sbjct: 600 TLPSMLPTISTELFALLASSSKPEPILQMLLAMQEK 635
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296082318|emb|CBI21323.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/635 (66%), Positives = 514/635 (80%), Gaps = 2/635 (0%)
Query: 3 MRP-ATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
M+P A + A RIS+A+I+ASN++RP R W+P LEQTLH+LG + LSPSLVARVI+P+LL
Sbjct: 1 MKPSAIEAAIRISRALIAASNQSRPTRSWSPSLEQTLHRLGCHELLSPSLVARVIDPFLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
HHSLALGFF WASQ+P F H+ +SY S+LKSLS+SRQ NA++ +LK VK KI LDSSV
Sbjct: 61 HHHSLALGFFYWASQKPGFAHTSISYQSVLKSLSISRQFNAVERLLKDVKAQKIVLDSSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I S I GK TQ AF +FNEV +IGP+ CNSL+A LASDG + A ++FDEM
Sbjct: 121 YRSVIASHIIGKRTQNAFLIFNEVSALSREIGPDTCNSLVAALASDGCVVYAQRVFDEMI 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
H GV +++GFGVFIW+FC NA+LG LS+LDEV K S INGS+IA+LIIHG C+ R
Sbjct: 181 HHGVPLNSLGFGVFIWRFCRNAELGTTLSLLDEVIKHA-SEINGSIIALLIIHGLCQVSR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
V EAF++L+ELR RE KPDF+AYRIV E F+L GS+ E E VLKKKRKLGVAPR NDYRE
Sbjct: 240 VSEAFELLEELRSREYKPDFMAYRIVTEAFRLKGSLAEVEKVLKKKRKLGVAPRENDYRE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
FI LI ERRI EAKELGEVI++G F I +DVLNAL+GSVSSIDP SA++FF FMI K
Sbjct: 300 FIFVLISERRIPEAKELGEVIINGNFPIGNDVLNALVGSVSSIDPGSAMLFFKFMISKES 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TLSNL +NLCKR K+DEL+EV+ +LS+ +YF+D+E+Y+VMVSFLC +GR+REAYG
Sbjct: 360 FPTLLTLSNLGRNLCKRGKADELLEVFHILSSRNYFSDLETYSVMVSFLCKAGRVREAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ GLDPD+S YN LMEACCREDLLRPAK+LWD+MFASG NLKTYNILI KFS
Sbjct: 420 VLQEMKKNGLDPDISSYNCLMEACCREDLLRPAKRLWDEMFASGYGVNLKTYNILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
E+G+I+ A LF +MLEKGV PDATTYTSLLEGLCQE ++AFEVF KSV DVMLA++
Sbjct: 480 EIGQIQEAQWLFQHMLEKGVNPDATTYTSLLEGLCQEKKFESAFEVFKKSVEQDVMLAQT 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
IL+TF++ +C+ G+FL A+KLL GL+ D+GHSDSHVI LK LADA E+ AIEHIKW+ +
Sbjct: 540 ILNTFILYICKEGNFLFASKLLCGLTYDVGHSDSHVIFLKYLADASEISTAIEHIKWVGD 599
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
+ P+ML IS ELFA L+SSS PEPIL +L A+QE
Sbjct: 600 TLPSMLPTISTELFALLASSSKPEPILQMLLAMQE 634
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543677|ref|XP_002512901.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223547912|gb|EEF49404.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 429/641 (66%), Positives = 520/641 (81%), Gaps = 3/641 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPA--RKWTPLLEQTLHQLGLRDSLSPSLVARVINPYL 60
MRPAT+LATRISQA+ISASN P R WTP LE LH++ RDSLSPSLVA+VI+P L
Sbjct: 2 MRPATELATRISQALISASNSRSPTQTRPWTPSLESVLHRIVSRDSLSPSLVAQVIDPCL 61
Query: 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSS 120
LTHHSLALGFFNWASQQP FTH+ L+Y SILKSLSLSRQ NAI+ VLKQVK +TLDSS
Sbjct: 62 LTHHSLALGFFNWASQQPGFTHNSLTYDSILKSLSLSRQFNAIEYVLKQVKNQNLTLDSS 121
Query: 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEM 180
RF+I SLI+G+ TQ A+ VF+E K DIGPEICNSLLAVL SDGY D LK+FDEM
Sbjct: 122 TQRFVISSLIRGRKTQDAYLVFSEAKSRTLDIGPEICNSLLAVLGSDGYFDKGLKVFDEM 181
Query: 181 SHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240
RGV F+T+GFGVFIW+FC +A L +VL++LD+V K NS+INGSVIAVL++HG C+
Sbjct: 182 LLRGVAFNTVGFGVFIWRFCRDANLSKVLNLLDQV-KEGNSVINGSVIAVLVVHGLCQAS 240
Query: 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300
RV EA VL+ELRIR CKPDF+AYRIVAE F+L GS + VLK KRKLGVAPR+NDYR
Sbjct: 241 RVNEALWVLNELRIRNCKPDFMAYRIVAEAFRLSGSSADINKVLKMKRKLGVAPRSNDYR 300
Query: 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG 360
+FIL LI +R + E KE+GEVIV G F I+ DVLNALIGSVSSIDP +A++FF+++I KG
Sbjct: 301 DFILSLIAKRLVLEVKEIGEVIVHGDFPIEVDVLNALIGSVSSIDPNTAMLFFHYIIGKG 360
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
+PTL TLSNLS+NL + K DE++EVY VLS+ DYF+D+E YNVM SFLC +G++REAY
Sbjct: 361 MLPTLLTLSNLSRNLSRHGKIDEMLEVYNVLSSKDYFSDLEGYNVMFSFLCKAGKIREAY 420
Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
GV+QEMK+KGL D+S YN LMEACCREDLLRPAKKLWD+MF GC N+KTYNILI KF
Sbjct: 421 GVLQEMKKKGLGTDISMYNCLMEACCREDLLRPAKKLWDEMFVVGCGVNIKTYNILIGKF 480
Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540
SE+ E+E A+RLFH+MLEKG+AP+ATTYTS+L+GLCQE+ AA E+F+KS+N D LA+
Sbjct: 481 SEIAEVEEAMRLFHHMLEKGIAPNATTYTSILKGLCQESKFDAAIEIFSKSINQDSKLAQ 540
Query: 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600
+LSTF+I+LC++G FL ATKLL G + D+GHSDSHV+LLK LADA E+ +A+EHIK I+
Sbjct: 541 RLLSTFIINLCKKGQFLAATKLLCGPAHDIGHSDSHVVLLKCLADAEEMSIAVEHIKQIR 600
Query: 601 ESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641
E+S MLQ IS+EL A LSSSS E IL LL A+ +KC++S
Sbjct: 601 EASSLMLQVISSELSALLSSSSKSESILFLLEAISDKCIES 641
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224143615|ref|XP_002336062.1| predicted protein [Populus trichocarpa] gi|222869847|gb|EEF06978.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 830 bits (2143), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 409/642 (63%), Positives = 495/642 (77%), Gaps = 32/642 (4%)
Query: 4 RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
R T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3 RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62
Query: 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K +TLDSS+YR
Sbjct: 63 HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122
Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
F++ SLI+ TQ AFSVFNE+K D+G E NSLLA L SDG +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182
Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
G+ FSTIGFGVFIW+ C N LG+VL ++DEV R NS+INGSVIAVLI+HG C+G R
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241
Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
EA + L+ELRIR KPDFIAYR+VAE F+ +GSVF+ VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301
Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361
Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
TL TLSNL +NLCK K DEL+EVY+VLS+N+YF+DMESYNVM SFLC GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421
Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
QEM++KGLDPD+S YNSL+E CREDLLRPAK+LWD+MF GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
G+IE A RLF++MLEKGV PDATT+ LLE LCQET + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541
Query: 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603
T +++LC + AD+ EV +A+EH K I+ +S
Sbjct: 542 KTLILNLCGK------------------------------ADSEEVPIAVEHAKQIRGNS 571
Query: 604 PTMLQEISAELFASLSSSSYPEPILLLLHAL-QEKCLDSEIG 644
P+MLQ I +L A SSSS PEPIL LL AL QE+ + + G
Sbjct: 572 PSMLQVICTKLLAFSSSSSNPEPILHLLQALSQERVISIDFG 613
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449490189|ref|XP_004158532.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 815 bits (2105), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/635 (62%), Positives = 494/635 (77%), Gaps = 2/635 (0%)
Query: 3 MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
MRP +LATR+S+AI+S SN+T PA WTP LEQ LH+LG R L+PSLV++VI+P+LL
Sbjct: 1 MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
+HHSLALGFFNWASQQP FTH+ SY+SILKSLSLSR I S+LKQVK KI LD SV
Sbjct: 61 SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I SLI K T AF VFNEV IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
+ + F+T+GFGVFIW+ C N + +VL+M+D R NS INGSVIA LIIHG C+ R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGART-NNSDINGSVIATLIIHGLCEASR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
+EEA +LDEL+ R CKPDF+ Y I+ E F+ +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
++ LI RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TL NLS+NLCK K+DEL+EV++VL N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
+ +IE AL L+ +ML K V PD YTSLL+GLCQ++ L+AAFEVF+KSV DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
+LSTF++ LC+ GHFL A+KLLRGL+SD+ H DSHV LLK ADA EV +A +H++W+QE
Sbjct: 540 LLSTFILCLCKVGHFLAASKLLRGLASDVAHPDSHVTLLKGFADAGEVSLAKQHVEWVQE 599
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
+SP+ML IS EL A L SS +PIL +L +QE
Sbjct: 600 TSPSMLSVISTELLAFLPSSPKADPILEILQTVQE 634
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449442054|ref|XP_004138797.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 801 bits (2070), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 394/635 (62%), Positives = 491/635 (77%), Gaps = 7/635 (1%)
Query: 3 MRPA-TDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLL 61
MRP +LATR+S+AI+S SN+T PA WTP LEQ LH+LG R L+PSLV++VI+P+LL
Sbjct: 1 MRPHFPELATRLSRAILSISNQTSPAGSWTPSLEQNLHRLGFRQMLNPSLVSQVIDPHLL 60
Query: 62 THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSV 121
+HHSLALGFFNWASQQP FTH+ SY+SILKSLSLSR I S+LKQVK KI LD SV
Sbjct: 61 SHHSLALGFFNWASQQPGFTHNSDSYNSILKSLSLSRHFGPIHSLLKQVKTQKIGLDLSV 120
Query: 122 YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMS 181
YR +I SLI K T AF VFNEV IG E+CNSLLA LASDG+ ++A K+FDEMS
Sbjct: 121 YRAVIDSLIIAKKTHDAFLVFNEVTSITHIIGSELCNSLLAALASDGFFEHAQKVFDEMS 180
Query: 182 HRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241
+ + F+T+GFGVFIW+ C N + +VL+M+D R NS INGSVIA LIIHG C+ R
Sbjct: 181 LKSIPFNTLGFGVFIWRICRNTDVVKVLNMIDGARTN-NSDINGSVIATLIIHGLCEASR 239
Query: 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301
+EEA +LDEL+ R CKPDF+ Y I+ E F+ +V +RE +LKKKRKLGVAPR NDY+E
Sbjct: 240 LEEASNILDELKNRGCKPDFLTYWILGEAFQSARNVVDREKILKKKRKLGVAPRLNDYKE 299
Query: 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361
++ LI RRI EAKELGEVIV G F +D++V N LIGSV+S+DP SAI+FF FM+EKGR
Sbjct: 300 YLFVLIAGRRIREAKELGEVIVKGNFPMDEEVSNVLIGSVASVDPYSAIMFFKFMVEKGR 359
Query: 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421
PTL TL NLS+NLCK K+DEL+EV++VL N+YF D++ Y++ +SFLC +G+++EAYG
Sbjct: 360 FPTLLTLRNLSRNLCKHGKTDELLEVFQVLCINNYFNDLDRYHLRISFLCKAGKVKEAYG 419
Query: 422 VIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481
V+QEMK+ G DPDVSFYNS++EACCREDLLRPA+KLWD+MFA GC GNLKTY+ILI KFS
Sbjct: 420 VLQEMKKNGFDPDVSFYNSVLEACCREDLLRPARKLWDEMFAGGCCGNLKTYSILIQKFS 479
Query: 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS 541
+ +IE AL L+ +ML K V PD YTSLL+GLCQ++ L+AAFEVF+KSV DV LA +
Sbjct: 480 KSNQIEEALVLYSHMLGKNVEPDIAIYTSLLQGLCQDSQLEAAFEVFSKSVEQDVNLAAT 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
+LSTF+ LC HFL A+KLLRGL+SD+ H DSHV LLK ADA EV +A +H++W+QE
Sbjct: 540 LLSTFI--LC---HFLAASKLLRGLASDVAHPDSHVTLLKGFADAGEVSLAKQHVEWVQE 594
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636
+SP+ML IS EL A L SS +PIL +L +QE
Sbjct: 595 TSPSMLSVISTELLAFLPSSPKADPILEILQTVQE 629
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224055765|ref|XP_002298642.1| predicted protein [Populus trichocarpa] gi|222845900|gb|EEE83447.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 790 bits (2041), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/554 (68%), Positives = 454/554 (81%), Gaps = 1/554 (0%)
Query: 4 RPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTH 63
R T+LA RIS+A+I+ SN + P R W PLLEQTLH++G RDSLS SLVARVI+P+LLTH
Sbjct: 3 RLGTELAVRISRALITESNSSIPTRSWNPLLEQTLHKIGCRDSLSQSLVARVIDPHLLTH 62
Query: 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR 123
HSLALGFFNWASQQP FTH+ L+YHS+LKSLS SRQ NAI+S+LK+ K +TLDSS+YR
Sbjct: 63 HSLALGFFNWASQQPGFTHNSLTYHSVLKSLSFSRQFNAIESLLKRAKAQNLTLDSSIYR 122
Query: 124 FIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR 183
F++ SLI+ TQ AFSVFNE+K D+G E NSLLA L SDG +NA+K+FDEM++R
Sbjct: 123 FVVDSLIKRGKTQMAFSVFNEIKSQSLDLGTETSNSLLASLGSDGCFNNAMKVFDEMNNR 182
Query: 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVE 243
G+ FSTIGFGVFIW+ C N LG+VL ++DEV R NS+INGSVIAVLI+HG C+G R
Sbjct: 183 GIGFSTIGFGVFIWRLCRNGDLGEVLRLVDEVEGR-NSLINGSVIAVLIVHGLCEGSRTS 241
Query: 244 EAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303
EA + L+ELRIR KPDFIAYR+VAE F+ +GSVF+ VLK KRKLGVAPR+NDYREFI
Sbjct: 242 EALRALNELRIRGWKPDFIAYRVVAEAFRSLGSVFDVNEVLKMKRKLGVAPRSNDYREFI 301
Query: 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP 363
LGLI ERRI EAKELGEVI SG F ++DDVLNALIGSVS+IDP SA+ FF+F+I KG+ P
Sbjct: 302 LGLITERRIYEAKELGEVIASGNFPMEDDVLNALIGSVSTIDPYSAMKFFHFVIGKGKFP 361
Query: 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423
TL TLSNL +NLCK K DEL+EVY+VLS+N+YF+DMESYNVM SFLC GR+REAY V+
Sbjct: 362 TLLTLSNLCRNLCKHGKIDELLEVYRVLSSNEYFSDMESYNVMFSFLCMGGRVREAYEVL 421
Query: 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
QEM++KGLDPD+S YNSL+E CREDLLRPAK+LWD+MF GC GNLKTYNILI KFSE+
Sbjct: 422 QEMRKKGLDPDISMYNSLIEVLCREDLLRPAKRLWDEMFVIGCGGNLKTYNILIGKFSEI 481
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543
G+IE A RLF++MLEKGV PDATT+ LLE LCQET + A +VF K VNHDVMLA++IL
Sbjct: 482 GQIEEATRLFNHMLEKGVTPDATTHRFLLEALCQETMFETAVDVFYKHVNHDVMLAQNIL 541
Query: 544 STFMISLCRRGHFL 557
T +++LC + FL
Sbjct: 542 KTLILNLCGKVVFL 555
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561647|ref|XP_003549091.1| PREDICTED: pentatricopeptide repeat-containing protein At5g14080-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/627 (59%), Positives = 484/627 (77%), Gaps = 4/627 (0%)
Query: 10 ATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLTHHSLALG 69
A +S+A+ISAS + +W P +E+ LH+LG R LSPSLV VI+P+L +HHSLALG
Sbjct: 8 ARGLSKAVISASKKRG---RWGPEVEERLHRLGWRQRLSPSLVGNVIDPFLKSHHSLALG 64
Query: 70 FFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129
FFNWASQQP F+H+P ++HS+LKSLS + +AI S+LKQ K + S++ II S
Sbjct: 65 FFNWASQQPGFSHTPFTFHSLLKSLSHTNHFSAIHSLLKQAKALNFPIQPSLFSSIIASH 124
Query: 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFST 189
+ ++AFS++ V +IG NSLLA LASDG +++A ++FDEMS RGV FST
Sbjct: 125 VARNRARQAFSLYCGVGSLSAEIGVATSNSLLAALASDGCLESARRVFDEMSERGVGFST 184
Query: 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249
+GFGVF+W+ C L +V+S+LDEV + S INGSV+AVLI+HG C +V EA +L
Sbjct: 185 LGFGVFVWRVCGEGDLEKVVSLLDEVGEC-GSGINGSVVAVLIVHGLCHASKVSEALWIL 243
Query: 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309
DELR R KPDF+AY +VA F+ MG+V + VLK KRKLGVAPR++DYR+ ILGL+ E
Sbjct: 244 DELRSRGWKPDFMAYWVVAAAFRSMGNVADEVKVLKMKRKLGVAPRSSDYRDLILGLVSE 303
Query: 310 RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369
RRI EAKE+GEVIV G F ++DDVLNALIGSVSS+DP SAIVFFNFM+EK R PT+ T+S
Sbjct: 304 RRIYEAKEVGEVIVGGNFPVEDDVLNALIGSVSSVDPGSAIVFFNFMVEKERFPTILTIS 363
Query: 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429
NLS+NLC K DEL+EV+ VL++++YF D+E YNVMVSFLC +GR+RE Y V+QEMK+K
Sbjct: 364 NLSRNLCGHGKVDELLEVFHVLNSHNYFKDVEGYNVMVSFLCKAGRVREGYSVLQEMKKK 423
Query: 430 GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489
G P+V+ YN +MEACC+EDLLRPA+KLWD+MF+SGC GNLKTYNILI KFSEVG+ E A
Sbjct: 424 GFRPNVTSYNYIMEACCKEDLLRPARKLWDEMFSSGCCGNLKTYNILIQKFSEVGQAEEA 483
Query: 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549
LF++ML+KGV PD T+YT LLEGLCQE L+AAFE++NKSV D++LAR ILS+F+ S
Sbjct: 484 HMLFYHMLDKGVEPDVTSYTLLLEGLCQEDKLEAAFELYNKSVKQDIILARDILSSFISS 543
Query: 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609
LCR+GH + A+KLL L+ D+G ++SHVILL+SLA+A+E+ +AIEH+KW+QE SP++LQ+
Sbjct: 544 LCRKGHLMAASKLLCSLNHDIGCAESHVILLESLANAQEIPIAIEHLKWVQEKSPSILQD 603
Query: 610 ISAELFASLSSSSYPEPILLLLHALQE 636
I L ASLSS++ PEPIL L +Q+
Sbjct: 604 ICTGLLASLSSATCPEPILQFLKRIQD 630
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811525|ref|XP_002873646.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319483|gb|EFH49905.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 759 bits (1959), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 358/634 (56%), Positives = 481/634 (75%), Gaps = 3/634 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPA +LA RI + ++ S +R AR W+P +EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPAAELAVRIGRELLKVSGSSRSARIWSPSVEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSVSYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ +Q AF V E +I P++CN LLA L SD D A K+F +M
Sbjct: 121 RSLIDALVLGRKSQSAFWVLEEALSTGREIHPDVCNRLLAALTSDRCFDYAQKLFVKMRQ 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
RGV +T+GFGV+I FC +++ Q+L ++DEV+K NS INGS+IA+LI+HG CK R
Sbjct: 181 RGVSLNTLGFGVYIGSFCTSSETDQLLRLVDEVKK-ANSNINGSIIALLILHGLCKSSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYRI+AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRIIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSG F +D+D+L+ALIGSVS+IDP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLMEAKEVAEVIVSGNFPMDNDILDALIGSVSAIDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF+D+ESY++M+SFLC +GR+RE Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSDLESYSLMISFLCKAGRVREGYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+ EMK+KGLDPDVS YN+L++ACCR +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LHEMKKKGLDPDVSLYNALIDACCRAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLEKG+ PD T Y SL+EGLC+ET L+AA EVF + D +AR
Sbjct: 480 EGEAEESLRLFQKMLEKGIEPDETIYMSLIEGLCKETKLEAALEVFIMCMERDNKTVARR 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
+LS F+++LC GHF A++LLR L H+ +HV+LLK +ADA+EVE+ I H+KWI+E
Sbjct: 540 LLSAFVLNLCSNGHFSEASQLLRK-QDHLKHTSAHVVLLKCVADAKEVEIGIRHMKWIKE 598
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
SP+++ IS++L AS SSS P+ IL + A++
Sbjct: 599 VSPSLVHTISSDLLASFCSSSDPDSILPFIRAIE 632
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30684737|ref|NP_196912.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635762|sp|Q9FMU2.2|PP380_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14080 gi|332004602|gb|AED91985.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 749 bits (1935), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 351/634 (55%), Positives = 484/634 (76%), Gaps = 3/634 (0%)
Query: 3 MRPATDLATRISQAIISASNRTRPARKWTPLLEQTLHQLGLRDSLSPSLVARVINPYLLT 62
MRPAT+LA RI + ++ S +R AR W+PL+EQ+LH LG R S+SPSLVARVI+P+LL
Sbjct: 1 MRPATELAVRIGRELLKVSGSSRAARIWSPLIEQSLHGLGFRHSISPSLVARVIDPFLLN 60
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122
HHSLALGFFNWA+QQP ++H +SYHSI KSLSLSRQ +A+D++ KQVK NKI LDSSVY
Sbjct: 61 HHSLALGFFNWAAQQPGYSHDSISYHSIFKSLSLSRQFSAMDALFKQVKSNKILLDSSVY 120
Query: 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSH 182
R +I +L+ G+ Q AF V E ++I P++CN LLA L SDG D A K+F +M H
Sbjct: 121 RSLIDTLVLGRKAQSAFWVLEEAFSTGQEIHPDVCNRLLAGLTSDGCYDYAQKLFVKMRH 180
Query: 183 RGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242
+GV +T+GFGV+I FC +++ Q+L ++DEV+K N INGS+IA+LI+H CK R
Sbjct: 181 KGVSLNTLGFGVYIGWFCRSSETNQLLRLVDEVKK-ANLNINGSIIALLILHSLCKCSRE 239
Query: 243 EEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302
+AF +L+ELR +CKPDF+AYR++AE F + G+++ER+VVLKKKRKLGVAPR++DYR F
Sbjct: 240 MDAFYILEELRNIDCKPDFMAYRVIAEAFVVTGNLYERQVVLKKKRKLGVAPRSSDYRAF 299
Query: 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRV 362
IL LI +R+ EAKE+ EVIVSGKF +D+D+L+ALIGSVS++DP SA+ F +M+ G++
Sbjct: 300 ILDLISAKRLTEAKEVAEVIVSGKFPMDNDILDALIGSVSAVDPDSAVEFLVYMVSTGKL 359
Query: 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422
P + TLS LSKNLC+ +KSD L++ Y++LS+ YF++++SY++M+SFLC +GR+RE+Y
Sbjct: 360 PAIRTLSKLSKNLCRHDKSDHLIKAYELLSSKGYFSELQSYSLMISFLCKAGRVRESYTA 419
Query: 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482
+QEMK++GL PDVS YN+L+EACC+ +++RPAKKLWD+MF GC NL TYN+LI K SE
Sbjct: 420 LQEMKKEGLAPDVSLYNALIEACCKAEMIRPAKKLWDEMFVEGCKMNLTTYNVLIRKLSE 479
Query: 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS 541
GE E +LRLF MLE+G+ PD T Y SL+EGLC+ET ++AA EVF K + D + R
Sbjct: 480 EGEAEESLRLFDKMLERGIEPDETIYMSLIEGLCKETKIEAAMEVFRKCMERDHKTVTRR 539
Query: 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601
+LS F+++LC GH A++LLR L H+ +HV+LLK +ADA+EVE+ I H++WI+E
Sbjct: 540 VLSEFVLNLCSNGHSGEASQLLRE-REHLEHTGAHVVLLKCVADAKEVEIGIRHMQWIKE 598
Query: 602 SSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
SP+++ IS++L AS SSS P+ IL + A++
Sbjct: 599 VSPSLVHTISSDLLASFCSSSDPDSILPFIRAIE 632
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9FMU2 | PP380_ARATH | No assigned EC number | 0.5536 | 0.9677 | 0.9952 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 652 | |||
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 6e-08 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 6e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-06 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-04 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.001 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.002 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 0.003 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 3e-14
Identities = 20/49 (40%), Positives = 36/49 (73%)
Query: 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517
++ TYN LI + + G++E AL+LF+ M ++G+ P+ TY+ L++GLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 70.3 bits (172), Expect = 2e-12
Identities = 74/345 (21%), Positives = 131/345 (37%), Gaps = 21/345 (6%)
Query: 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIV------AEEFKLMGSVFEREVVLKKKRKL 290
+ ++ A +VL ++ K D Y + + + M VF V
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA------ 501
Query: 291 GVAPRTNDYREFILGLIVERRICEAKELGE--VIVSGKFTIDDDVLNALI---GSVSSID 345
GV + + I G ++ AK G ++ S D V NALI G ++D
Sbjct: 502 GVEANVHTFGALIDGCARAGQV--AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVD 559
Query: 346 PRSAIVFFNFMIEKGRV-PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404
R+ V E + P T+ L K + D EVY+++ + E Y
Sbjct: 560 -RAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS 464
+ V+ G A + +MK+KG+ PD F+++L++ L A ++
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 465 GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524
G +Y+ L+ S + AL L+ ++ + P +T +L+ LC+ L A
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKA 738
Query: 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569
EV ++ + S +++ R+ V LL D
Sbjct: 739 LEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED 783
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 4e-11
Identities = 15/46 (32%), Positives = 29/46 (63%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
+YN ++ C G++ EA + EMK++G+ P+V Y+ L++ C+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 5e-08
Identities = 37/161 (22%), Positives = 64/161 (39%), Gaps = 1/161 (0%)
Query: 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415
M +KG P S L D+ E+ + SY+ ++ +
Sbjct: 640 MKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKN 699
Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
++A + +++K L P VS N+L+ A C + L A ++ +M G N TY+I
Sbjct: 700 WKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSI 759
Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516
L+ + + L L E G+ P+ + GLC
Sbjct: 760 LLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-08
Identities = 39/158 (24%), Positives = 67/158 (42%), Gaps = 10/158 (6%)
Query: 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRL 416
+ R +S S + K L + E +E++++L A FT +Y+ +V +
Sbjct: 81 TQIRKSGVSLCSQIEK-LVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSI 139
Query: 417 REAYGVIQEMKRKGLDPDVSFYNS--LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474
R V ++ G +PD N LM C +L A++L+D+M NL ++
Sbjct: 140 RCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC--GMLIDARRLFDEMPER----NLASWG 193
Query: 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512
+I + G A LF M E G + T+ +L
Sbjct: 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVML 231
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 5e-07
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267
+I G+CK +VEEA K+ +E++ R KP+ Y I+
Sbjct: 9 LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSIL 44
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 6e-07
Identities = 40/187 (21%), Positives = 73/187 (39%), Gaps = 41/187 (21%)
Query: 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
CK D+ +EV+ + D S+ +++ L + R EA ++M L P+
Sbjct: 437 CKC--IDKALEVFHNIPEKDVI----SWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNS 489
Query: 436 SFYNSLMEACCREDLLRPAKKL--------------------------------WDQMFA 463
+ + AC R L K++ W+Q
Sbjct: 490 VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF-- 547
Query: 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523
+ ++ ++NIL++ + G+ A+ LF+ M+E GV PD T+ SLL + +
Sbjct: 548 NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ 607
Query: 524 AFEVFNK 530
E F+
Sbjct: 608 GLEYFHS 614
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 1e-06
Identities = 43/177 (24%), Positives = 84/177 (47%), Gaps = 6/177 (3%)
Query: 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490
+P +S +N LM C + A ++ + +G + K Y LIS ++ G+++
Sbjct: 433 RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF 492
Query: 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550
+FH M+ GV + T+ +L++G + + AF + + +V R + + +IS
Sbjct: 493 EVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNA-LISA 551
Query: 551 C-RRGHFLVATKLLRGLSSDLGHSD-SHVI---LLKSLADAREVEMAIEHIKWIQES 602
C + G A +L + ++ D H+ L+K+ A+A +V+ A E + I E
Sbjct: 552 CGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEY 608
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 1e-06
Identities = 59/281 (20%), Positives = 110/281 (39%), Gaps = 27/281 (9%)
Query: 303 ILGLIVERRICEAKELGEVI-VSGKFTIDDDVLNALIGSVSSI-DPRSAIVFFNFMIEKG 360
I L+ R EA EL E++ FT+ +AL+ + ++ R + + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME-----SYNVMVSFLCTSGR 415
P ++ + L K L++ ++ F +M S+ ++ L +G
Sbjct: 154 FEPDQYMMNRV---LLMHVKCGMLIDARRL------FDEMPERNLASWGTIIGGLVDAGN 204
Query: 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNI 475
REA+ + +EM G D + + ++ A R ++L + +G G+
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264
Query: 476 LISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535
LI +S+ G+IE A +F M EK + S+L G + A ++ + +
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLAGYALHGYSEEALCLYYEMRDSG 320
Query: 536 VMLARSILSTFMISLCRRGHFLVATK------LLRGLSSDL 570
V + + S MI + R L K + G D+
Sbjct: 321 VSIDQFTFSI-MIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 2e-06
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530
KG+ PD TY +L++GLC+ + A E+ ++
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 3e-06
Identities = 41/154 (26%), Positives = 80/154 (51%), Gaps = 14/154 (9%)
Query: 403 YNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
YN ++ GR+++ ++++M+++G LD D ++ +AC ++ ++ A + +
Sbjct: 377 YNRLLR----DGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLI 432
Query: 462 FASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521
L T+N+L+S + +I+GALR+ + E G+ D YT+L+ + +
Sbjct: 433 RNP----TLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKV 488
Query: 522 QAAFEVFNKSVNHDVMLARSILSTF--MISLCRR 553
A FEVF++ VN V + + TF +I C R
Sbjct: 489 DAMFEVFHEMVNAGV---EANVHTFGALIDGCAR 519
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 3e-06
Identities = 16/34 (47%), Positives = 20/34 (58%)
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
TYN LI + G +E AL LF M E+G+ PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 4e-06
Identities = 35/167 (20%), Positives = 65/167 (38%), Gaps = 35/167 (20%)
Query: 361 RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420
R PTLST +N+++S +S + A
Sbjct: 433 RNPTLST-----------------------------------FNMLMSVCASSQDIDGAL 457
Query: 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480
V++ ++ GL D Y +L+ C + + +++ +M +G N+ T+ LI
Sbjct: 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGC 517
Query: 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527
+ G++ A + M K V PD + +L+ Q + AF+V
Sbjct: 518 ARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDV 564
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 35/150 (23%), Positives = 66/150 (44%), Gaps = 15/150 (10%)
Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLW 458
D+ S+N++++ G+ A + M G++PD + SL+ AC R ++ + +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612
Query: 459 DQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEGLC 516
M + NLK Y ++ G++ A +N + K + PD + +LL C
Sbjct: 613 HSMEEKYSITPNLKHYACVVDLLGRAGKLTEA----YNFINKMPITPDPAVWGALLNA-C 667
Query: 517 Q--------ETNLQAAFEVFNKSVNHDVML 538
+ E Q FE+ SV + ++L
Sbjct: 668 RIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV 435
+YN ++ LC +GR+ EA + +EMK +G++PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 232 IIHGFCKGKRVEEAFKVLDELRIRECKPD 260
+I G CK RVEEA ++ E++ R +PD
Sbjct: 6 LIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 38/149 (25%), Positives = 59/149 (39%), Gaps = 39/149 (26%)
Query: 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--------RE-- 448
D+ S+NV+V +G EA + M G+ PDV + ++ C RE
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 449 ------------DLL-------------RPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483
D++ A+ ++D+M C ++N +IS + E
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFEN 266
Query: 484 GEIEGALRLFHNMLEKGVAPDATTYTSLL 512
GE L LF M E V PD T TS++
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVI 295
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGV 501
TYN LIS + + G++E AL LF M EKGV
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 3e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503
L+TYN L+ ++ G+ + AL + M G+ P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 4e-04
Identities = 31/107 (28%), Positives = 48/107 (44%), Gaps = 22/107 (20%)
Query: 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMES------ 402
A+ FN M+E G P T +L LC ++S + + +YF ME
Sbjct: 573 AVELFNRMVESGVNPDEVTFISL---LCACSRSGMVTQGL------EYFHSMEEKYSITP 623
Query: 403 ----YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
Y +V L +G+L EAY I +M + PD + + +L+ AC
Sbjct: 624 NLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNAC 667
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 4e-04
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431
+YN ++S C +G+L EA + +EMK KG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 5e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 12/56 (21%)
Query: 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL------STFMISLCR 552
PD TY +L++G C++ ++ A ++FN+ M R I S + LC+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNE------MKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 33/223 (14%)
Query: 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQ-VLSMLDEVR- 216
+L+ V G +D A ++ + +G++ T+ + + C NAK + L + ++++
Sbjct: 654 ALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKALELYEDIKS 712
Query: 217 ---KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI--VAEEF 271
+ S +N +I C+G ++ +A +VL E++ P+ I Y I VA E
Sbjct: 713 IKLRPTVSTMNA------LITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASER 766
Query: 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS---GKFT 328
K V +L + ++ G+ P R I GL + RR +A LGE +VS G+
Sbjct: 767 KDDADVGLD--LLSQAKEDGIKPNLVMCRC-ITGLCL-RRFEKACALGEPVVSFDSGRPQ 822
Query: 329 IDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371
I++ + A++ + I G +PT+ LS +
Sbjct: 823 IENKWTS------------WALMVYRETISAGTLPTMEVLSQV 853
|
Length = 1060 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 5e-04
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 232 IIHGFCKGKRVEEAFKVLDELR 253
+I G C+ RV+EA ++LDE+
Sbjct: 13 LIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (88), Expect = 6e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 429 KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQM 461
KGL PDV YN+L++ CR + A +L D+M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 7e-04
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC 200
N+L+ G ++ ALK+F+EM RG++ + + + I C
Sbjct: 6 YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.001
Identities = 27/134 (20%), Positives = 53/134 (39%), Gaps = 31/134 (23%)
Query: 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD---------- 459
LC+ G+L +A +++ M+ + D Y +L C + + ++
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLG 120
Query: 460 ---------------------QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498
+F +L ++N+L+ +++ G + AL L+H ML
Sbjct: 121 VRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLW 180
Query: 499 KGVAPDATTYTSLL 512
GV PD T+ +L
Sbjct: 181 AGVRPDVYTFPCVL 194
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 37/131 (28%), Positives = 58/131 (44%), Gaps = 5/131 (3%)
Query: 386 EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445
E KV S + D S+ M+S +G +A M++ + PD S++ AC
Sbjct: 341 EAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505
L KL + G + N LI +S+ I+ AL +FHN+ EK D
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----DV 455
Query: 506 TTYTSLLEGLC 516
++TS++ GL
Sbjct: 456 ISWTSIIAGLR 466
|
Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 48/188 (25%), Positives = 81/188 (43%), Gaps = 11/188 (5%)
Query: 327 FTIDDDVLNALIGS-VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN-LCKRNKSDEL 384
F +D DV+NALI V D SA + F+ M + + + +S +N C + EL
Sbjct: 218 FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGEC--LEGLEL 275
Query: 385 VEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444
+ LS + + S L RE +G + + G DVS NSL++
Sbjct: 276 FFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVV---KTGFAVDVSVCNSLIQM 332
Query: 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504
A+K++ +M + ++ +IS + + G + AL + M + V+PD
Sbjct: 333 YLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPD 388
Query: 505 ATTYTSLL 512
T S+L
Sbjct: 389 EITIASVL 396
|
Length = 857 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 652 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.97 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.96 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.94 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.92 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.91 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.88 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.87 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.86 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.85 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.79 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.79 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.78 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.78 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.76 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.75 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.73 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.72 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.68 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.68 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.68 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.67 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.65 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.64 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.64 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.64 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.63 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.61 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.59 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.56 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.56 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.55 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.54 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.52 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.52 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.51 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.5 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.49 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.48 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.48 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.45 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.44 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.43 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.42 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.42 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.42 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.41 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.4 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.39 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.35 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.35 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.3 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.25 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.25 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.25 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.25 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.23 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.22 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.19 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.17 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.17 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.13 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.08 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.05 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.05 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.03 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.01 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.0 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.99 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.99 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.98 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.97 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.96 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.95 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.93 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.92 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.89 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.88 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.84 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.84 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.83 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.81 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.8 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.79 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.76 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.76 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.74 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.73 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.66 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.65 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.59 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.59 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.58 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.54 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.49 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.49 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.45 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.43 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.41 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.41 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.34 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.34 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.31 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.27 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.2 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.18 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.17 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.16 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.09 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.07 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.05 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.04 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.01 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.97 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.96 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.94 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.94 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.94 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.93 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.89 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.87 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.83 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.81 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.79 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.79 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.78 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.76 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.74 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.74 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.71 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.71 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.69 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.65 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.62 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.62 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.61 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.6 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.6 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.59 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.59 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.59 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.59 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.58 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.54 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.51 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.5 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.46 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.45 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.43 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.41 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.37 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.37 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 97.34 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.33 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.32 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.23 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.19 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.11 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.06 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.03 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.97 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.94 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.92 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.9 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.89 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.88 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.85 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.78 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.77 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.77 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.76 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.76 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.7 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.69 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.64 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 96.62 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.6 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.58 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.57 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.51 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.49 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.48 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.45 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.35 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.34 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 96.31 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.25 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.23 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.21 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.18 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 96.09 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 96.08 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.05 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.03 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.02 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.02 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.98 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.97 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 95.91 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.85 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.82 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 95.78 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.78 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.69 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 95.64 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.6 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 95.45 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.41 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.38 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.3 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.23 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 95.18 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.16 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 95.15 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.99 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.93 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.88 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.82 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.75 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.72 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.61 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.58 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 94.52 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 94.49 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 94.43 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.4 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 94.35 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.13 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 94.09 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.01 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 93.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 93.52 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.5 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.12 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.1 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.1 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.09 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 93.03 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.92 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.8 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.8 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 92.56 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 92.4 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.34 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 92.2 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.19 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.08 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 91.94 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 91.85 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 91.79 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 91.71 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 91.42 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.11 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 91.0 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.98 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.87 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 90.48 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 90.16 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.13 | |
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 90.06 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.03 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.66 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 89.55 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 89.51 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.25 | |
| KOG2063 | 877 | consensus Vacuolar assembly/sorting proteins VPS39 | 89.23 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 89.02 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.01 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 88.71 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 88.57 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 88.27 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 88.14 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 87.88 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.34 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.21 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 87.07 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 87.04 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 86.74 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.72 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 86.51 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.41 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 86.27 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 85.49 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 85.48 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 85.28 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 85.16 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 85.11 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 84.87 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 84.85 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.59 | |
| PF07575 | 566 | Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR0 | 84.17 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 83.85 | |
| PHA02875 | 413 | ankyrin repeat protein; Provisional | 83.84 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.77 | |
| KOG0403 | 645 | consensus Neoplastic transformation suppressor Pdc | 83.54 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 83.54 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 83.23 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.36 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 82.07 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 81.65 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 81.47 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-74 Score=624.88 Aligned_cols=571 Identities=16% Similarity=0.128 Sum_probs=476.3
Q ss_pred Hhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 54 RVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 54 ~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
.++..+.+ +.++.|+++|+.+. ..|+.||..||+.++++|+..+++..+.+++..|.+.|+.|+..+++.||.+|++.
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~ 235 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC 235 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC
Confidence 34444433 34566666666663 33666666666666666666666666666666666666667777777777777888
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHH
Q 006281 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSML 212 (652)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 212 (652)
|+++.|.++|++|. .||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+.+.|.+++
T Consensus 236 g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~ 311 (857)
T PLN03077 236 GDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMH 311 (857)
T ss_pred CCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHH
Confidence 88888888888775 35777888888888888888888888888888888888888888888888888888888888
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 006281 213 DEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGV 292 (652)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 292 (652)
..+.+. |.. ++..+|+.|+.+|++.|++++|.++|++|.. ||..+|++++.+|++.|++++|+++|++|.+.|+
T Consensus 312 ~~~~~~-g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~ 385 (857)
T PLN03077 312 GYVVKT-GFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNV 385 (857)
T ss_pred HHHHHh-CCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCC
Confidence 888776 544 4477888888888888888888888888763 5778888888888888888888888888888888
Q ss_pred CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 293 APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (652)
Q Consensus 293 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (652)
.||..||+.++.+|++.|+++.+.++++.+.+.|..++..++|+++..|.+ |++++|.++|++|.+ +|..+|+.+
T Consensus 386 ~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~m 461 (857)
T PLN03077 386 SPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSI 461 (857)
T ss_pred CCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence 888888888888888888888888888888888888888888888887765 688888888888754 466788888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
+.+|++.|+.++|..+|++|.. ++.||..+|+.++.+|++.|..+.+.+++..+.+.|+.+|..++++|+.+|++.|++
T Consensus 462 i~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~ 540 (857)
T PLN03077 462 IAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM 540 (857)
T ss_pred HHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence 8888888888888888888875 477888888888888888888888888888888888888888888888888888888
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
++|.++|+.+ .||..+||.+|.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|
T Consensus 541 ~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M 615 (857)
T PLN03077 541 NYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSM 615 (857)
T ss_pred HHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHH
Confidence 8888888876 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred h-hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 532 V-NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 532 ~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
. ..++.|+..+|+.++.+|++.|++++|.+++++|+-. +++..|.+|+.+|..+|+.+.+....+++.+..|++. ..
T Consensus 616 ~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~-~~ 693 (857)
T PLN03077 616 EEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT-PDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSV-GY 693 (857)
T ss_pred HHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCc-ch
Confidence 9 6899999999999999999999999999999999753 5678899999999999999999999999999999875 44
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 611 SAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
|..|...|...|+|++|.++.+.|+++|++++||.++
T Consensus 694 y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ 730 (857)
T PLN03077 694 YILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSW 730 (857)
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccE
Confidence 5558899999999999999999999999999999876
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-71 Score=607.34 Aligned_cols=573 Identities=17% Similarity=0.156 Sum_probs=430.9
Q ss_pred CCHHHHHHhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
.++...+.++..+.+ +.+..|+.+|+.+ ...|+.|+..+|..++++|.+.+....+.+++..+.+.+..++...++.+
T Consensus 49 ~~~~~~n~~i~~l~~~g~~~~A~~l~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 49 SSTHDSNSQLRALCSHGQLEQALKLLESM-QELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred cchhhHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 445555666666555 5688999999988 45678889999999988888888888888888888888888888888888
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 205 (652)
+.+|++.|+++.|.++|++|. .||..+||.+|.+|++.|++++|.++|++|...|+.||..||+.++++|+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 888888888888888888885 4578888888888888888888888888888888888888888888888877888
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLK 285 (652)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 285 (652)
+.+.+++..+.+. |.. ++..+++.|+.+|++.|++++|.++|++|.. ||..+||+++.+|++.|++++|+++|+
T Consensus 204 ~~~~~~~~~~~~~-g~~-~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~ 277 (857)
T PLN03077 204 ARGREVHAHVVRF-GFE-LDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFF 277 (857)
T ss_pred hhHHHHHHHHHHc-CCC-cccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHH
Confidence 8888888777776 544 3467777788888888888888888877763 577778888888888888888888888
Q ss_pred HHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCC
Q 006281 286 KKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 286 ~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~ 364 (652)
+|...|+.||..||+.++.+|.+.|+.+.+.+++..+.+.|..+|..+||.++..|.+ |++++|.++|++|. .||
T Consensus 278 ~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d 353 (857)
T PLN03077 278 TMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKD 353 (857)
T ss_pred HHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCC
Confidence 8877788888888888888888888888888888877777777777778877777665 67777777777774 356
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.|+.+
T Consensus 354 ~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~ 433 (857)
T PLN03077 354 AVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEM 433 (857)
T ss_pred eeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 67777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
|++.|++++|.++|++|. .+|..+|+.+|.+|++.|+.++|+.+|++|.. ++.||..||..++.+|++.|+.+.+
T Consensus 434 y~k~g~~~~A~~vf~~m~----~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~ 508 (857)
T PLN03077 434 YSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCG 508 (857)
T ss_pred HHHcCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHh
Confidence 777777777777777775 45667777777777777777777777777765 4777777777777777777777777
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+++..+++.++.++..+++.++.+|++.|++++|.++|+.+ .++..+|+.++.+|.+.|+.++|++++++|.+.+.
T Consensus 509 ~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~ 585 (857)
T PLN03077 509 KEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGV 585 (857)
T ss_pred HHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 777777776666666666666666666666666666666665 33455666666666666666666666666666555
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHH-HcccccC
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQ-EKCLDSE 642 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~g~~~~ 642 (652)
.++...|+.++.+|.+.|++++|.+++++|. +.|+.|+
T Consensus 586 ~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~ 624 (857)
T PLN03077 586 NPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN 624 (857)
T ss_pred CCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc
Confidence 5555556666666666666666666666665 3455443
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-68 Score=564.23 Aligned_cols=516 Identities=17% Similarity=0.195 Sum_probs=472.0
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCC-ccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKI-TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (652)
.++...|..++..|.+.|+++.|.++|++|.+.|+ +++..+++.++.+|.+.|.+++|.++|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 35677889999999999999999999999999985 57788888999999999999999999999964 89999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHcc
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (652)
++.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+. |..| +..+|+.+|.+|++.
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~-Gv~P-dvvTynaLI~gy~k~ 520 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA-GVEA-NVHTFGALIDGCARA 520 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHc-CCCC-CHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999987 6544 589999999999999
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--cCCCCChhhHHHHHHHHHccCCHHHHHH
Q 006281 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK--LGVAPRTNDYREFILGLIVERRICEAKE 317 (652)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 317 (652)
|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.+
T Consensus 521 G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~e 600 (1060)
T PLN03218 521 GQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKE 600 (1060)
T ss_pred cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999986 6899999999999999999999999999
Q ss_pred HHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006281 318 LGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY 396 (652)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 396 (652)
+|+.|.+.++.++..+|+.++..|++ |++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+.|.+.|+
T Consensus 601 lf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~ 680 (1060)
T PLN03218 601 VYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGI 680 (1060)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999998775 79999999999999999999999999999999999999999999999999999
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 397 FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 397 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.+
T Consensus 681 ~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sL 760 (1060)
T PLN03218 681 KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSIL 760 (1060)
T ss_pred CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----C-------------------CCHHHHHHHHHHhhh
Q 006281 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----E-------------------TNLQAAFEVFNKSVN 533 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~a~~~~~~~~~ 533 (652)
+.+|++.|++++|.++|++|.+.|+.||..+|++++..|.+ . +..++|..+|++|++
T Consensus 761 L~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~ 840 (1060)
T PLN03218 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETIS 840 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999876532 1 123568888888888
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC--CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL--GHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.|+.||..+|..++.++++.+..+.+..+++.+...+ ++...|..++.++.+. .++|..++++|...+.
T Consensus 841 ~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~Gi 911 (1060)
T PLN03218 841 AGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLGV 911 (1060)
T ss_pred CCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcCC
Confidence 8888888888888877777888888888888776533 3445677788776322 3578888888887654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-67 Score=561.09 Aligned_cols=512 Identities=17% Similarity=0.173 Sum_probs=478.5
Q ss_pred HHHHhhhhhhc-cChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH
Q 006281 51 LVARVINPYLL-THHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL 129 (652)
Q Consensus 51 ~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~ 129 (652)
....++..+.+ ++...|+++|+++.+..-+.++..+++.++.+|.+.|..+.|..+++.|.. |+..+|+.+|.+|
T Consensus 372 ~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL~a~ 447 (1060)
T PLN03218 372 EYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLMSVC 447 (1060)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHHHHH
Confidence 33444444443 568999999999976655678889999999999999999999999999975 9999999999999
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHH
Q 006281 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVL 209 (652)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 209 (652)
++.|+++.|.++|+.|.+.|+.||..+||.||.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.
T Consensus 448 ~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl 527 (1060)
T PLN03218 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAF 527 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhh--CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 210 SMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI--RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
++|+.|... |..|+ ..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|++++.+|++.|++++|.++|++|
T Consensus 528 ~lf~~M~~~-Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M 605 (1060)
T PLN03218 528 GAYGIMRSK-NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMI 605 (1060)
T ss_pred HHHHHHHHc-CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999987 76554 89999999999999999999999999976 679999999999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc-CChhHHHHHHHHHHHcCCCCCHH
Q 006281 288 RKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSS-IDPRSAIVFFNFMIEKGRVPTLS 366 (652)
Q Consensus 288 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~ 366 (652)
.+.|+.|+..+|+.+|.+|++.|++++|.++|+.|.+.|..||..+|+.++..|.+ |+.++|.+++++|.+.|+.|+..
T Consensus 606 ~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~ 685 (1060)
T PLN03218 606 HEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685 (1060)
T ss_pred HHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 99999999999999999999999999999999999999999999999999999776 79999999999999999999999
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...|+.||..||+.++.+|+
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~ 765 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASE 765 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCC
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V-------------------GEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~m~~~~~~p 503 (652)
+.|++++|.++|++|.+.|+.||..+|+.++..|.+ . +..++|+.+|++|++.|+.|
T Consensus 766 k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~P 845 (1060)
T PLN03218 766 RKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLP 845 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCC
Confidence 999999999999999999999999999999876432 1 22467999999999999999
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (652)
|..||+.++.++++.+..+.+..+++++...+..|+..+|+.+++++.+. .++|..++++|....
T Consensus 846 d~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G 910 (1060)
T PLN03218 846 TMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG 910 (1060)
T ss_pred CHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence 99999999998889999999999999988888888999999999998432 468999999998743
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-64 Score=532.67 Aligned_cols=480 Identities=16% Similarity=0.171 Sum_probs=392.5
Q ss_pred CHHhHHHHHHHHHcCCChhHHHHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH
Q 006281 118 DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 118 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 196 (652)
+...|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 44456666666666666666666666665432 45566666666666666666666666666666666666666666666
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 276 (652)
.+|++.|+++.|.++|++|.+ ++..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|.
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~~------~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMPE------RNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCCC------CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 666666666666666666542 24566777777778888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (652)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m 356 (652)
.+.+.+++..+.+.|+.||..+++.++.+|++.|++++|.++|+.+.
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~--------------------------------- 286 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP--------------------------------- 286 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------
Confidence 88888888888888888888888888888888888877777766542
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
.+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++.+|.+.|+.||..
T Consensus 287 -----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~ 361 (697)
T PLN03081 287 -----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIV 361 (697)
T ss_pred -----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCee
Confidence 347788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
+|++|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|+
T Consensus 362 ~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~ 437 (697)
T PLN03081 362 ANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR 437 (697)
T ss_pred ehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 99999999999999999999999986 57889999999999999999999999999999999999999999999999
Q ss_pred cCCCHHHHHHHHHHhhh-CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVN-HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
+.|++++|.++|++|.+ .++.|+..+|+.++++|++.|++++|.+++++++.. ++...|..++.+|...|+++.|...
T Consensus 438 ~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~ 516 (697)
T PLN03081 438 YSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK-PTVNMWAALLTACRIHKNLELGRLA 516 (697)
T ss_pred cCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCcHHHHHH
Confidence 99999999999999976 588899999999999999999999999999988654 4566788999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
++++.+..|+.. ..|..++.+|++.|++++|.+++++|+++|+++.||..+
T Consensus 517 ~~~l~~~~p~~~-~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~ 567 (697)
T PLN03081 517 AEKLYGMGPEKL-NNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTW 567 (697)
T ss_pred HHHHhCCCCCCC-cchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeE
Confidence 999998888753 456669999999999999999999999999999999765
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-62 Score=517.56 Aligned_cols=471 Identities=15% Similarity=0.178 Sum_probs=283.2
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC-CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK-ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
.+..+|+.+|..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|++.++++.+.+++..|.+.|+.||..+||.|
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 344566666666666667777777776666543 4566666777777776666666666777666666666666677777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC
Q 006281 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (652)
Q Consensus 161 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 240 (652)
+.+|++.|+++.|.++|++|.+ ||..+|+.++.+|++.|++++|.++|++|.+. |..| +..+|+.++.++++.|
T Consensus 165 i~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~-g~~p-~~~t~~~ll~a~~~~~ 238 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYREAFALFREMWED-GSDA-EPRTFVVMLRASAGLG 238 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHh-CCCC-ChhhHHHHHHHHhcCC
Confidence 7777777777777777766643 56666777777777777777777777766655 4333 3566666666666666
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (652)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (652)
+.+.+.+++..+.+.|+.||..+|++++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|+.++|.++|+
T Consensus 239 ~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~ 314 (697)
T PLN03081 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYY 314 (697)
T ss_pred cHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHH
Confidence 666666666666666666666677777777777777777777766664 2456666666666666666555544433
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
+|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||.
T Consensus 315 ----------------------------------~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~ 360 (697)
T PLN03081 315 ----------------------------------EMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDI 360 (697)
T ss_pred ----------------------------------HHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCe
Confidence 3333444555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.+|+.|+.+|++.|++++|.++|++|. .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 436 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 555555555555555555555555553 2455555555555555555555555555555555555555555555555
Q ss_pred HhcCCHHHHHHHHHHHHH-CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 481 SEVGEIEGALRLFHNMLE-KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~-~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++| +..|+..+|+.++.+|...|+++.|
T Consensus 437 ~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred hcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 555555555555555543 355555555555555555555555555555443 3445555555555555555555555
Q ss_pred HHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 560 TKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 560 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.++++++.. .|.+...|..++.+|.+.|++++|.+++++|.+.+
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g 558 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKG 558 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcC
Confidence 555555544 33344455555555555555555555555555543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=321.49 Aligned_cols=556 Identities=11% Similarity=0.011 Sum_probs=301.5
Q ss_pred ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHH
Q 006281 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 140 (652)
.++...|...|+.+....+ .+...+..+...+.+.|+++.|...++.+.+.. +.+...+..+...+.+.|++++|.+
T Consensus 308 ~g~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 384 (899)
T TIGR02917 308 LGNLEQAYQYLNQILKYAP--NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAE 384 (899)
T ss_pred cCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 4556666666666544322 234444555555556666666666666655543 3445555555666666666666666
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---------------------------------cc
Q 006281 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGV---------------------------------EF 187 (652)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------------------------------~~ 187 (652)
+|+++...... +...+..+...+...|++++|...|+.+.+.+. +.
T Consensus 385 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 463 (899)
T TIGR02917 385 YLAKATELDPE-NAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463 (899)
T ss_pred HHHHHHhcCCC-CHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 66655544221 334445555555555555555555555544321 22
Q ss_pred CcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 006281 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (652)
Q Consensus 188 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (652)
+..++..+...+...|++++|.+.|+++.+. .|.+...+..+...+...|++++|.+.|+.+.... +.+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSI---EPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHH
Confidence 3344444444555555555555555555443 33334444444555555555555555555554432 1234445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH-hcCCh
Q 006281 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSV-SSIDP 346 (652)
Q Consensus 268 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~ 346 (652)
...+.+.|+.++|...++++.+.+. .+...+..+...+...|++++|..+++.+.+.. +.+...|..+...+ ..|++
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 617 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDL 617 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCH
Confidence 5555555555555555555544321 122334445555555555555555555554432 22333344433332 23555
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
++|+..|+.+.+.. +.+...+..+...+...|++++|..+++.+.+.... +..++..++..+...|++++|..+++.+
T Consensus 618 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 618 NKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666665555432 123444555555555566666666666655554322 4455555556666666666666666665
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006281 427 KRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (652)
Q Consensus 427 ~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 506 (652)
.+.+. .+...+..+...+...|++++|.+.|+.+...+ |+..++..+..++.+.|++++|.+.++.+.+... .+..
T Consensus 696 ~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~ 771 (899)
T TIGR02917 696 QKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHP-NDAV 771 (899)
T ss_pred HhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHH
Confidence 55432 244555555556666666666666666665542 3335555566666666666666666666665432 2455
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...|...|++++|.+.|+++++..+. ++.++..++..+...|+ .+|+.+++++.. .|.++..+..++.++..
T Consensus 772 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 772 LRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 5666666666666666666666666665543 55566666666666666 556666666655 44455555566666666
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.|++++|++.++++.+.+|.. ..++..++.++.+.|++++|.+++++|.
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEA-AAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCC-hHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 666777777777766666664 3334346666666777777766666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=318.00 Aligned_cols=566 Identities=10% Similarity=-0.002 Sum_probs=372.7
Q ss_pred hhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCC
Q 006281 55 VINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKN 134 (652)
Q Consensus 55 ~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 134 (652)
....+..++++.|+..|+.+.+...- +...+..+...+...|+++.|...++.+.+.. +.+...+..+...+.+.|+
T Consensus 268 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~ 344 (899)
T TIGR02917 268 ALVDFQKKNYEDARETLQDALKSAPE--YLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGR 344 (899)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCC--chhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCC
Confidence 33334567899999999988654321 23344455667789999999999999998875 5567788888999999999
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
+++|...++.+..... .+...++.+...+.+.|++++|...|+++.+.+. .+...+..+...+...|++++|.+.++.
T Consensus 345 ~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 345 VDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 9999999999987653 3677899999999999999999999999987642 2445566666677777888888888877
Q ss_pred HHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006281 215 VRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (652)
Q Consensus 215 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (652)
+... .|........++..+.+.|++++|.++++.+... .+++..++..+...+...|++++|...|+++.+... .
T Consensus 423 a~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~ 497 (899)
T TIGR02917 423 AAQL---DPELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-D 497 (899)
T ss_pred HHhh---CCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-C
Confidence 7765 3333444445555566666666666666665543 223445555556666666666666666655544321 1
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCC---------------------------------CCHHHHHHHHHH-
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFT---------------------------------IDDDVLNALIGS- 340 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~---------------------------------~~~~~~~~l~~~- 340 (652)
+...+..+...+...|++++|.+.++.+....+. .+...+..+...
T Consensus 498 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 577 (899)
T TIGR02917 498 FFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYY 577 (899)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHH
Confidence 2223334444444555555555555554443221 112222222222
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|++++|..+++.+.+.. +.+...+..+...+...|++++|...|+.+.+.... +...+..+..++...|++++|.
T Consensus 578 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 655 (899)
T TIGR02917 578 LGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAI 655 (899)
T ss_pred HHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHH
Confidence 22355555665555555432 234555666666666666666666666666554332 4455666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
.+|+++.+... .+..++..+...+...|++++|.++++.+.+.+ +.+...+..+...+...|++++|.+.|+.+.+.+
T Consensus 656 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 733 (899)
T TIGR02917 656 TSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA 733 (899)
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence 66666665432 245566666666666666777776666666654 4556666667777777777777777777777543
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
|+..++..+..++.+.|++++|.+.++++++..+. +...+..++..|...|++++|.+.++++.+ .|.++..+..+
T Consensus 734 --~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l 810 (899)
T TIGR02917 734 --PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNL 810 (899)
T ss_pred --CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34456666777777777777777777777766654 666777777777778888888888877766 55566667777
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
++.+...|+ .+|++.++++.+..|+++.. +..++.++...|++++|.++++++.+.+.
T Consensus 811 ~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 811 AWLYLELKD-PRALEYAEKALKLAPNIPAI-LDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred HHHHHhcCc-HHHHHHHHHHHhhCCCCcHH-HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 777777777 77888888887777776443 44478888888888888888888887653
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-26 Score=259.16 Aligned_cols=588 Identities=11% Similarity=0.059 Sum_probs=421.4
Q ss_pred HHHHHhhcCCCCCCCHHHHHHhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHH--------------HHHHHHHHHhcC
Q 006281 34 LEQTLHQLGLRDSLSPSLVARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLS--------------YHSILKSLSLSR 98 (652)
Q Consensus 34 ~~~~l~~~~~~~~~~~~~~~~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~--------------~~~ll~~~~~~~ 98 (652)
..+.|.++-.-.+-.|+.+........ .++.+.|...++.+.+...-.+.... .....+.+...|
T Consensus 47 a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g 126 (1157)
T PRK11447 47 VRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPEGRQALQQARLLATTG 126 (1157)
T ss_pred HHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 344555554333445666655444433 46788999998888654432222111 123344678899
Q ss_pred ChhHHHHHHHHHHhCCCccCHHh-HHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 006281 99 QINAIDSVLKQVKVNKITLDSSV-YRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMF 177 (652)
Q Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 177 (652)
++++|.+.|+.+.+.+ +++... ...........|+.++|++.++++....+. +...+..+...+...|+.++|+..+
T Consensus 127 ~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~-~~~~~~~LA~ll~~~g~~~eAl~~l 204 (1157)
T PRK11447 127 RTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG-NTGLRNTLALLLFSSGRRDEGFAVL 204 (1157)
T ss_pred CHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHccCCHHHHHHHH
Confidence 9999999999998765 444322 111222233468999999999999887433 5667888999999999999999999
Q ss_pred HHHHhCCC------------------c--------------cCcccHH---------------------HHHHHHHhcCc
Q 006281 178 DEMSHRGV------------------E--------------FSTIGFG---------------------VFIWKFCENAK 204 (652)
Q Consensus 178 ~~m~~~~~------------------~--------------~~~~~~~---------------------~ll~~~~~~g~ 204 (652)
+++.+... . |+..... .....+...|+
T Consensus 205 ~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~ 284 (1157)
T PRK11447 205 EQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQ 284 (1157)
T ss_pred HHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCC
Confidence 98754321 0 1110000 11223456688
Q ss_pred HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc-CHHHHH------------HHHHHH
Q 006281 205 LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP-DFIAYR------------IVAEEF 271 (652)
Q Consensus 205 ~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~------------~ll~~~ 271 (652)
+++|+..|++..+. .|.+..++..+..++.+.|++++|...|++..+..... +...|. .....+
T Consensus 285 ~~~A~~~l~~aL~~---~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~ 361 (1157)
T PRK11447 285 GGKAIPELQQAVRA---NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAA 361 (1157)
T ss_pred HHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHH
Confidence 99999999988877 67777888888888899999999999998887653221 111121 223456
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHH
Q 006281 272 KLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIV 351 (652)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~ 351 (652)
.+.|++++|+..|+++.+... .+...+..+...+...|++++|.+.|+.+.+.... +...+..+...+..++.++|+.
T Consensus 362 ~~~g~~~eA~~~~~~Al~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~ 439 (1157)
T PRK11447 362 LKANNLAQAERLYQQARQVDN-TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALA 439 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHH
Confidence 778899999999988887532 23445566777888889999999999888876533 3344555555566667888888
Q ss_pred HHHHHHHcCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 352 FFNFMIEKGRV--------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (652)
Q Consensus 352 ~~~~m~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 423 (652)
+++.+...... .....+..+...+...|++++|++.|++..+..+. +...+..+...|.+.|++++|...+
T Consensus 440 ~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l 518 (1157)
T PRK11447 440 FIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALM 518 (1157)
T ss_pred HHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 87765332110 01123445566788899999999999999887654 6677888889999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH---------HHHHHHHHHHhcCCHHHHHHHHH
Q 006281 424 QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK---------TYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 424 ~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
+++.+.... +...+..+...+...++.++|...++.+......++.. .+..+...+...|+.++|.++++
T Consensus 519 ~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~ 597 (1157)
T PRK11447 519 RRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR 597 (1157)
T ss_pred HHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 998876322 44445555556678899999999988765432222221 22345667888999999999987
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 495 NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
. ..++...+..+...+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++.+.. .|.++
T Consensus 598 ~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~ 671 (1157)
T PRK11447 598 Q-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATANDSL 671 (1157)
T ss_pred h-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCCh
Confidence 2 2345667788889999999999999999999998876 788899999999999999999999999887 45666
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH-----HHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ-----EISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
..+..++.++...|++++|++.++++.+..|..+. .++..++..+...|++++|++.+++...
T Consensus 672 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~ 739 (1157)
T PRK11447 672 NTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 77788999999999999999999999987665433 4556678889999999999999998864
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-25 Score=248.86 Aligned_cols=571 Identities=9% Similarity=0.019 Sum_probs=363.8
Q ss_pred HHHhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH---------
Q 006281 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY--------- 122 (652)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--------- 122 (652)
+.++---...++.+.|.+.+..+..... -++..+..++..+.+.|+.++|.+.++++.+.. +.+....
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p--~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~-P~~~~~~~~~~~~~~~ 108 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDP--NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA-PDSNAYRSSRTTMLLS 108 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHhc
Confidence 3333333345678899999998865433 357778888999999999999999999999876 3333322
Q ss_pred -------HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChh-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHH
Q 006281 123 -------RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE-ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV 194 (652)
Q Consensus 123 -------~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 194 (652)
..+.+.+...|++++|++.|+.+...... +.. ............|+.++|+..|+++.+... -+...+..
T Consensus 109 ~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P-~~~~~~~~ 186 (1157)
T PRK11447 109 TPEGRQALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYP-GNTGLRNT 186 (1157)
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCC-CCHHHHHH
Confidence 33445788999999999999999866322 322 111122222345899999999999998742 24566777
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCC-----------------CCCchhhHH---------------------------
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENS-----------------MINGSVIAV--------------------------- 230 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~~--------------------------- 230 (652)
+...+...|+.++|+..++++...... .+.....+.
T Consensus 187 LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~ 266 (1157)
T PRK11447 187 LALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLA 266 (1157)
T ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhcc
Confidence 888888899999999999998654100 000000010
Q ss_pred -------HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh-hhH---
Q 006281 231 -------LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT-NDY--- 299 (652)
Q Consensus 231 -------~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~--- 299 (652)
.....+...|++++|+..|++..+... .+...+..+..++.+.|++++|+..|++..+....... ..+
T Consensus 267 dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~l 345 (1157)
T PRK11447 267 DPAFRARAQGLAAVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESL 345 (1157)
T ss_pred CcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHH
Confidence 112334455666666666666655421 14555566666666666666666666665553321110 111
Q ss_pred ---------HHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHH-HHHhcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 006281 300 ---------REFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALI-GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS 369 (652)
Q Consensus 300 ---------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 369 (652)
......+.+.|++++|...++.+....+. +...+..+- .....|++++|++.|++..+... .+...+.
T Consensus 346 l~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~ 423 (1157)
T PRK11447 346 LKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVR 423 (1157)
T ss_pred HHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 01122344556666666666666655332 222222222 22334566666666666655432 1233344
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSANDYF--------TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.+...+. .++.++|..+++.+...... .....+..+...+...|++++|++.|++..+.... +...+..+
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L 501 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL 501 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 4444442 34556666555443221100 00112344555666777777888877777766432 45566667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---------hHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---------TYTSLL 512 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---------~~~~l~ 512 (652)
...|.+.|++++|...++++.+.. +.+...+..+...+...++.++|+..++.+......++.. .+..+.
T Consensus 502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 777777788888888887777643 3344455555555666777777777777654322222211 123445
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|+.++|.++++. .+ .++..+..+...+.+.|++++|++.++++.+ +|.++..+..++.++...|++++
T Consensus 581 ~~l~~~G~~~eA~~~l~~----~p-~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e 655 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ----QP-PSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA 655 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh----CC-CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence 667788888888888772 22 3566778899999999999999999999987 78888899999999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
|++.++++.+..|+.... ...++.++...|++++|.++++++.....
T Consensus 656 A~~~l~~ll~~~p~~~~~-~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 656 ARAQLAKLPATANDSLNT-QRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred HHHHHHHHhccCCCChHH-HHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 999999999988877544 44488899999999999999999887643
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-23 Score=222.85 Aligned_cols=557 Identities=10% Similarity=0.007 Sum_probs=393.2
Q ss_pred HHHhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHc
Q 006281 52 VARVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQ 131 (652)
Q Consensus 52 ~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 131 (652)
+........+++++.|+..|+.+.+... -+..++..+.+++.+.|++++|+..+++..+.. |+...|..++..+
T Consensus 48 f~~a~~~~~~Gd~~~A~~~l~~Al~~dP--~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i-- 121 (987)
T PRK09782 48 LDKALKAQKNNDEATAIREFEYIHQQVP--DNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI-- 121 (987)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh--
Confidence 3444444456889999999999865443 247778999999999999999999999999975 4444444433333
Q ss_pred CCChhHHHHHHHHHHhCCCCCChhhHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCccCcccHHHH-HHHHHhc
Q 006281 132 GKNTQKAFSVFNEVKFNCEDIGPEICNSLLAV--------LASDGYIDNALKMFDEMSHRGVEFSTIGFGVF-IWKFCEN 202 (652)
Q Consensus 132 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--------~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-l~~~~~~ 202 (652)
+++.+|..+++++....+. +..++..+... |.+. +.|.+.++ .......|+..+.... .+.|.+.
T Consensus 122 -~~~~kA~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l 195 (987)
T PRK09782 122 -PVEVKSVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYL 195 (987)
T ss_pred -ccChhHHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHH
Confidence 8899999999999887433 44555555554 5555 55555555 3333344455555555 8899999
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc-cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK-GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
|++++|++++.++.+. .+.+......|..+|.. .++ +.+..+++. .++-|...+..+...|.+.|+.++|.
T Consensus 196 ~dw~~Ai~lL~~L~k~---~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~ 267 (987)
T PRK09782 196 KQWSQADTLYNEARQQ---NTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQ 267 (987)
T ss_pred hCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999988 55656666777778887 466 888877553 23358888999999999999999999
Q ss_pred HHHHHHHhcCCC-CChhhHH------------------------------HHHHHHHccCCHHHHHHHHH----------
Q 006281 282 VVLKKKRKLGVA-PRTNDYR------------------------------EFILGLIVERRICEAKELGE---------- 320 (652)
Q Consensus 282 ~~~~~~~~~~~~-p~~~~~~------------------------------~ll~~~~~~~~~~~a~~~~~---------- 320 (652)
.+++++...-.. |+..++. .++..+.+.++++.+.++.+
T Consensus 268 ~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (987)
T PRK09782 268 HYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEE 347 (987)
T ss_pred HHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHH
Confidence 999886543211 2221111 11334445555554444421
Q ss_pred -------------------HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHHhcC
Q 006281 321 -------------------VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-G-RVPTLSTLSNLSKNLCKRN 379 (652)
Q Consensus 321 -------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~l~~~~~~~~ 379 (652)
.+.+..........-+.......|+.++|..+|...... + ..++......++..|.+.+
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~ 427 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHP 427 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCC
Confidence 111110111111122222334567888888888887662 1 2334445557777777666
Q ss_pred Ch---HHHHHH----------------------HHHHHhC-CC-Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006281 380 KS---DELVEV----------------------YKVLSAN-DY-FT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKG 430 (652)
Q Consensus 380 ~~---~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~ 430 (652)
.. ..+..+ ++..... +. ++ +...|..+..++.. ++.++|+..+.+....
T Consensus 428 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~- 505 (987)
T PRK09782 428 YLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR- 505 (987)
T ss_pred cccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh-
Confidence 52 222222 1111111 11 23 56677888888776 7888999988887766
Q ss_pred CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH
Q 006281 431 LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS 510 (652)
Q Consensus 431 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ 510 (652)
.|+......+...+...|++++|...|+++... +|+...+..+..++.+.|++++|...+++.++.... +...+..
T Consensus 506 -~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~ 581 (987)
T PRK09782 506 -QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWW 581 (987)
T ss_pred -CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 466554444455556899999999999998654 455566777788889999999999999999876422 3333434
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV 589 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 589 (652)
+...+...|++++|...++++++..+ +...+..+..++.+.|++++|++.++++.. +|.++..+..++.++...|++
T Consensus 582 La~~l~~~Gr~~eAl~~~~~AL~l~P--~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ 659 (987)
T PRK09782 582 LHAQRYIPGQPELALNDLTRSLNIAP--SANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI 659 (987)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence 44455567999999999999988776 477888999999999999999999999988 778888888999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 590 EMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++|++.++++.+..|++....++ ++.++...|++++|+..+++..+.
T Consensus 660 eeAi~~l~~AL~l~P~~~~a~~n-LA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 660 AQSREMLERAHKGLPDDPALIRQ-LAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999999999988655555 999999999999999999988765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-20 Score=202.01 Aligned_cols=571 Identities=11% Similarity=0.016 Sum_probs=400.8
Q ss_pred CHHHHHHhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 006281 48 SPSLVARVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (652)
Q Consensus 48 ~~~~~~~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (652)
++.+...+...+. .++.+.|+..++.+.+.. |+...|..++..+ +++.+|..+++++.+.. +-+..++..+.
T Consensus 77 n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld---P~n~~~~~~La~i---~~~~kA~~~ye~l~~~~-P~n~~~~~~la 149 (987)
T PRK09782 77 NIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH---PGDARLERSLAAI---PVEVKSVTTVEELLAQQ-KACDAVPTLRC 149 (987)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---cccHHHHHHHHHh---ccChhHHHHHHHHHHhC-CCChhHHHHHH
Confidence 3555544444433 366889999998876543 4444444444333 99999999999999986 45566666666
Q ss_pred HH--------HHcCCChhHHHHHHHHHHhCCCCCChhhHHHH-HHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHH
Q 006281 127 PS--------LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL-LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIW 197 (652)
Q Consensus 127 ~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 197 (652)
.. |.+. +.|.+.++ .......|++.+.... ...|.+.|+++.|+.++.++.+.+.. +..-...+-.
T Consensus 150 ~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ 224 (987)
T PRK09782 150 RSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFD 224 (987)
T ss_pred HHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence 65 5555 44555554 3333344445544444 89999999999999999999998643 3444555666
Q ss_pred HHHh-cCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-cCHHHHH----------
Q 006281 198 KFCE-NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYR---------- 265 (652)
Q Consensus 198 ~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~---------- 265 (652)
+|.. .++ +.+..+++.. ...+..+...++..|.+.|+.++|.++++++...-.. |+..+|-
T Consensus 225 ay~q~l~~-~~a~al~~~~------lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~ 297 (987)
T PRK09782 225 VLLAGQLD-DRLLALQSQG------IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANP 297 (987)
T ss_pred HHHHhhCH-HHHHHHhchh------cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCch
Confidence 7777 366 7777775431 2256788889999999999999999999987643211 2222221
Q ss_pred --------------------HHHHHHHhcCCHHHHHHHHHH--------HHhcCCC-------------------C-Chh
Q 006281 266 --------------------IVAEEFKLMGSVFEREVVLKK--------KRKLGVA-------------------P-RTN 297 (652)
Q Consensus 266 --------------------~ll~~~~~~g~~~~a~~~~~~--------~~~~~~~-------------------p-~~~ 297 (652)
.++..+.+.++++.++++... +...+.. | +..
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~ 377 (987)
T PRK09782 298 VQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLT 377 (987)
T ss_pred hhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHH
Confidence 124455566666655555321 0001110 1 222
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHHhcC----ChhHHHHH-------------------
Q 006281 298 DYREFILGLIVERRICEAKELGEVIVSGK--FTIDDDVLNALIGSVSSI----DPRSAIVF------------------- 352 (652)
Q Consensus 298 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~----~~~~a~~~------------------- 352 (652)
....+-....+.|+.++|.++++...... ...+......++..+... ....+..+
T Consensus 378 ~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (987)
T PRK09782 378 RLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGI 457 (987)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhh
Confidence 22223334566789999999998887731 122344555555554432 13333333
Q ss_pred ---HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 353 ---FNFMIEK-GR-VP--TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 353 ---~~~m~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
+...... +. ++ +...+..+..++.. ++.++|...+....... |+......+...+...|++++|...|++
T Consensus 458 ~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rk 534 (987)
T PRK09782 458 ADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQK 534 (987)
T ss_pred hhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 1111111 11 23 56667777777766 88889999888877654 4544444445555789999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
+... .|+...+..+...+.+.|++++|.+.++...+.+ +.+...+..+...+...|++++|...+++.++. .|+.
T Consensus 535 a~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~ 609 (987)
T PRK09782 535 ISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSA 609 (987)
T ss_pred Hhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCH
Confidence 8665 4455566677788899999999999999999875 344444444445555679999999999999965 5678
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+..++.+.|++++|...|++++..++. +...+..+..++...|++++|++.++++.+ .|.++..+..++.++.
T Consensus 610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 610 NAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 88999999999999999999999999999887 788899999999999999999999999887 7888889999999999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCCCC
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGAGK 647 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 647 (652)
..|++++|+..++++.+..|+....... .++...+..+++.|.+-+++...-.+....|++.
T Consensus 689 ~lGd~~eA~~~l~~Al~l~P~~a~i~~~-~g~~~~~~~~~~~a~~~~~r~~~~~~~~~a~~~~ 750 (987)
T PRK09782 689 RLDDMAATQHYARLVIDDIDNQALITPL-TPEQNQQRFNFRRLHEEVGRRWTFSFDSSIGLRS 750 (987)
T ss_pred HCCCHHHHHHHHHHHHhcCCCCchhhhh-hhHHHHHHHHHHHHHHHHHHHhhcCccchhcccc
Confidence 9999999999999999999988555444 8888888899999999888777766665555444
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.9e-23 Score=196.22 Aligned_cols=456 Identities=15% Similarity=0.099 Sum_probs=350.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh
Q 006281 87 YHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS 166 (652)
Q Consensus 87 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 166 (652)
-..+.+-..+.|++.+|++.-...-+.+ +.+......+-..+.+..+++....--....+.. ..-.++|..+.+.+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence 4456666778889998888766555544 3334444444455666666666555444333332 2246788889999999
Q ss_pred cCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHH
Q 006281 167 DGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAF 246 (652)
Q Consensus 167 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 246 (652)
.|++++|+.+++.+.+... -....|..+..++...|+.+.|.+.|.+..+. .|...-+.+.+...+...|++++|.
T Consensus 129 rg~~~~al~~y~~aiel~p-~fida~inla~al~~~~~~~~a~~~~~~alql---nP~l~ca~s~lgnLlka~Grl~ea~ 204 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKP-KFIDAYINLAAALVTQGDLELAVQCFFEALQL---NPDLYCARSDLGNLLKAEGRLEEAK 204 (966)
T ss_pred hchHHHHHHHHHHHHhcCc-hhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc---CcchhhhhcchhHHHHhhcccchhH
Confidence 9999999999999887642 24677888888888899999999998888876 5555555556666777789999999
Q ss_pred HHHHHHhhCCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcC
Q 006281 247 KVLDELRIRECKPD-FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSG 325 (652)
Q Consensus 247 ~~~~~m~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (652)
..+.+..+. .|. .+.|+.|...+-.+|+...|+..|++..+. .|+
T Consensus 205 ~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~------------------------------ 250 (966)
T KOG4626|consen 205 ACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPN------------------------------ 250 (966)
T ss_pred HHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCc------------------------------
Confidence 988887764 343 346777777777788888887777776553 221
Q ss_pred CCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 006281 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (652)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (652)
-...|-.|...|...+.++.|+..+.+.....+. ...++..
T Consensus 251 --------------------------------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gN 291 (966)
T KOG4626|consen 251 --------------------------------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGN 291 (966)
T ss_pred --------------------------------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccc
Confidence 1223444555666677788888888777665433 5567788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE 485 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 485 (652)
+...|..+|..+.|+..|++.++.... -+..|+.|..++-..|+..+|.+.+....... +....+.+.|...|...|.
T Consensus 292 la~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~ 369 (966)
T KOG4626|consen 292 LACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGK 369 (966)
T ss_pred eEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcc
Confidence 888899999999999999999887432 35789999999999999999999999998874 5567788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (652)
+++|..+|....+- .|. ....+.|...|-+.|++++|+..|+++++..+. -...|+.+...|...|+.+.|++.+.
T Consensus 370 ~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~-fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 370 IEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPT-FADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred chHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCch-HHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 99999999998864 444 457888999999999999999999999887765 56689999999999999999999999
Q ss_pred Hhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 565 GLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 565 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
++.. +|.-.+++..|+.+|...|+..+|+..|+.+++..|+.+...+| ++..+---.+|.+-
T Consensus 447 rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cN-llh~lq~vcdw~D~ 509 (966)
T KOG4626|consen 447 RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCN-LLHCLQIVCDWTDY 509 (966)
T ss_pred HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhH-HHHHHHHHhcccch
Confidence 9877 77778899999999999999999999999999999999777666 77776555555553
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.6e-20 Score=184.21 Aligned_cols=557 Identities=13% Similarity=0.074 Sum_probs=385.4
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHH
Q 006281 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAF 139 (652)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~ 139 (652)
.+.|..-|+.+.++.+ +|.- ..+.+++ ...+++..|..+|....... .+||+.+ .+-.++.+.|+.+.|+
T Consensus 146 ~~~A~a~F~~Vl~~sp--~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~ 219 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSP--DNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKAL 219 (1018)
T ss_pred HHHHHHHHHHHHhhCC--cchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHH
Confidence 3577788888765543 3332 3344444 46788999999998866553 3444432 3335667888999999
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHH
Q 006281 140 SVFNEVKFNCEDIGPEICNSLLAVLASDGY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVR 216 (652)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 216 (652)
..|....+..+ -++.++-.|...-....+ +..+..++......+ .-++...+.|...|.-.|++..++.+...+.
T Consensus 220 ~a~~ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 220 LAFERALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHHHHHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 99988877633 133344333333333333 455566665554433 2366777888888888899999999888888
Q ss_pred hccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCC
Q 006281 217 KRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAP 294 (652)
Q Consensus 217 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p 294 (652)
......+--...|..+..+|-..|++++|...|.+..+. .||. ..+--+...+.+.|+.+.+...|+...+. .|
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p 373 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LP 373 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Cc
Confidence 762222222334666888888999999999998877664 3343 34445778888899999999999888774 33
Q ss_pred C-hhhHHHHHHHHHccC----CHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH----HHcCCCCCH
Q 006281 295 R-TNDYREFILGLIVER----RICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM----IEKGRVPTL 365 (652)
Q Consensus 295 ~-~~~~~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m----~~~~~~~~~ 365 (652)
| ..|...+...|...+ ..+.|..++....... +.|...|-.+-..+..++...++..|... ...+..+..
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~ip~ 452 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQIPP 452 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCCCH
Confidence 3 334444444554443 4566666666666553 44566677777777778777777777654 345555778
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSAN---DYFTDM------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
...|.+.......|++..|...|+..... ...+|. .+--.+..++-..++++.|.+.|..+.+. .|+-.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88888888888999999999998887654 122232 23334556666777889999999998877 34432
Q ss_pred -HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhhHHHHHHH
Q 006281 437 -FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK-GVAPDATTYTSLLEG 514 (652)
Q Consensus 437 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~l~~~ 514 (652)
.|..++......+...+|...+......+ ..++..++.+...|.....+..|.+-|+...+. ...+|..+...|.+.
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~ 609 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNV 609 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHH
Confidence 34444433334467788888888888764 566677777787888888888888877776643 223566666666665
Q ss_pred HHc------------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-CCchhHHHHHH
Q 006281 515 LCQ------------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-GHSDSHVILLK 581 (652)
Q Consensus 515 ~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~l~~ 581 (652)
|.. .+..++|+++|.+++..++. |...-+.++-+++..|++++|..+|.+..+.. ...++|..++.
T Consensus 610 ~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah 688 (1018)
T KOG2002|consen 610 YIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAH 688 (1018)
T ss_pred HHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHH
Confidence 532 23567888999888888876 76777778888899999999999999988743 36778889999
Q ss_pred HHhccccHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 582 SLADAREVEMAIEHIKWIQES-SPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|...|+|..|+++|+..... .+.+...+.+.|+.++.+.|++.+|.+.+......
T Consensus 689 ~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 689 CYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 999999999999999987765 45566677777999999999999998888766544
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-21 Score=183.82 Aligned_cols=370 Identities=13% Similarity=0.054 Sum_probs=277.1
Q ss_pred CCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 223 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
|.-..+|..+.+.+-..|++++|+..++.+.+...+ .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-
T Consensus 113 ~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~ 189 (966)
T KOG4626|consen 113 PQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSD 189 (966)
T ss_pred chHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcc
Confidence 333445555555555555556665555555553211 344555555555555555555555555443 23333322222
Q ss_pred HHHH-HccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 303 ILGL-IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS 381 (652)
Q Consensus 303 l~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 381 (652)
+..+ -..|++.+|...+.+.++... --...|+.|.-.+-..|+.
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~qp-----------------------------------~fAiawsnLg~~f~~~Gei 234 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIETQP-----------------------------------CFAIAWSNLGCVFNAQGEI 234 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhhCC-----------------------------------ceeeeehhcchHHhhcchH
Confidence 2222 223555555544433332211 1234566666677888999
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHH
Q 006281 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLRPAKKLWDQ 460 (652)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~ 460 (652)
..|+..|++....++. -...|-.|...|...+.++.|...|.+.... +|+ .+.+..+...|...|.++.|+..+++
T Consensus 235 ~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykr 311 (966)
T KOG4626|consen 235 WLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKR 311 (966)
T ss_pred HHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHH
Confidence 9999999998876543 3458889999999999999999999988866 454 56677777888899999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH
Q 006281 461 MFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR 540 (652)
Q Consensus 461 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 540 (652)
.++.. +.=...|+.|..++-..|++.+|++.|+..+..... ...+.+.|...|...|.+++|..+|...++-.+. -.
T Consensus 312 al~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~a 388 (966)
T KOG4626|consen 312 ALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FA 388 (966)
T ss_pred HHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hh
Confidence 99874 334679999999999999999999999999975322 4678889999999999999999999998887665 45
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
...+.|...|.+.|++++|+..++++.. .|.-.+++..++..|...|+++.|++.+.++...+|.. ....+.|+.+|.
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-AeAhsNLasi~k 467 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-AEAHSNLASIYK 467 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-HHHHhhHHHHhh
Confidence 5688899999999999999999999887 77778899999999999999999999999999999987 555666999999
Q ss_pred cCCCCchHHHHHHHHHHc
Q 006281 620 SSSYPEPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g~~~~a~~~~~~~~~~ 637 (652)
..|+..+|++-+++..+.
T Consensus 468 DsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 468 DSGNIPEAIQSYRTALKL 485 (966)
T ss_pred ccCCcHHHHHHHHHHHcc
Confidence 999999999999988765
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-19 Score=181.51 Aligned_cols=578 Identities=12% Similarity=0.055 Sum_probs=411.0
Q ss_pred CHHHHHHhhhhhhccChhHHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHH
Q 006281 48 SPSLVARVINPYLLTHHSLALGFFNWAS-QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFII 126 (652)
Q Consensus 48 ~~~~~~~~l~~~~~~~~~~a~~~f~~~~-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 126 (652)
-+.++.+..-.+.+++...|+.+|..+. ..++..||+.. .+-..+.+.++.+.|...|.+..+.+ |.++.++..|.
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHH
Confidence 3455556666677888999999999864 46677777743 23367789999999999999999976 33444444333
Q ss_pred HHHHcC---CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCc--cCcccHHHHHHHHHh
Q 006281 127 PSLIQG---KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE--FSTIGFGVFIWKFCE 201 (652)
Q Consensus 127 ~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~ 201 (652)
..-... ..+..++.++...-.... -++.+.+.|...|.-.|+++.++.+.+-+...... .-...|-.+.++|-.
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~-~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha 319 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENN-ENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHA 319 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcC-CCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh
Confidence 332222 345667777776655443 37889999999999999999999999988876421 123456778889999
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCc-hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcC----C
Q 006281 202 NAKLGQVLSMLDEVRKRENSMING-SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMG----S 276 (652)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g----~ 276 (652)
.|++++|...|.+..+. .+++ ...+.-|...|.+.|+++.+...|+.+.+.. +-+..+...+...|...+ .
T Consensus 320 ~Gd~ekA~~yY~~s~k~---~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~ 395 (1018)
T KOG2002|consen 320 QGDFEKAFKYYMESLKA---DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEK 395 (1018)
T ss_pred hccHHHHHHHHHHHHcc---CCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHH
Confidence 99999999999998876 4443 4445568999999999999999999998862 225567767767776664 4
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH----cCCCCCCHHHHHHHH-HHHhcCChhHHHH
Q 006281 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIV----SGKFTIDDDVLNALI-GSVSSIDPRSAIV 351 (652)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~-~~~~~~~~~~a~~ 351 (652)
.+.|..++.+..+.- .-|...|..+...+... +...+...+..+. ..+..+.+...|.+- ..+..|++++|..
T Consensus 396 ~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~ 473 (1018)
T KOG2002|consen 396 RDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALE 473 (1018)
T ss_pred HHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHH
Confidence 456666666555433 22444555555555444 3333355554433 444455666655554 4577899999999
Q ss_pred HHHHHHHc---CCCCCH------HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 352 FFNFMIEK---GRVPTL------STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 352 ~~~~m~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
.|+..... ...++. .+--.+...+-..++.+.|.+.|..+....+. -...|--++...-..++..+|...
T Consensus 474 ~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~ 552 (1018)
T KOG2002|consen 474 HFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLL 552 (1018)
T ss_pred HHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHH
Confidence 99988765 222222 23334555667778999999999999886432 222333333222234678889999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCCHHHH
Q 006281 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSE------------VGEIEGA 489 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~------------~g~~~~A 489 (652)
+++.....- .++..++.+...+.+...+..|.+-|+...+. ...+|..+.-.|...|.+ .+..++|
T Consensus 553 lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KA 631 (1018)
T KOG2002|consen 553 LKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKA 631 (1018)
T ss_pred HHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHH
Confidence 998887642 35666666777888888999999988777765 224677777677665542 2456789
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+++|...++...+ |...-+.+.-.++..|++.+|..+|.+..+.... ...+|-.++.+|...|++..|+++|+.....
T Consensus 632 lq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~~lkk 709 (1018)
T KOG2002|consen 632 LQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYENCLKK 709 (1018)
T ss_pred HHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876544 6777777888899999999999999998876653 4558889999999999999999999988663
Q ss_pred ---CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh-------------------cCCCCchH
Q 006281 570 ---LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS-------------------SSSYPEPI 627 (652)
Q Consensus 570 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------~~g~~~~a 627 (652)
..++.....|++++.+.|.+.+|.+.+..+....|.++.+.+| ++.... ..++.+.|
T Consensus 710 f~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN-~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a 788 (1018)
T KOG2002|consen 710 FYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN-LALVLKKLAESILRLEKRTLEEVLEAVKELEEA 788 (1018)
T ss_pred hcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH-HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 3366677799999999999999999999999999999888888 444432 23455667
Q ss_pred HHHHHHHHHcccc
Q 006281 628 LLLLHALQEKCLD 640 (652)
Q Consensus 628 ~~~~~~~~~~g~~ 640 (652)
.++|+++...+-+
T Consensus 789 ~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 789 RRLFTELSKNGDK 801 (1018)
T ss_pred HHHHHHHHhcCCC
Confidence 7777777666544
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-19 Score=188.18 Aligned_cols=434 Identities=12% Similarity=-0.008 Sum_probs=274.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 006281 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (652)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (652)
+......+.+.|+++.|+..|++.... .|+...|..+..+|.+.|++++|++.++...+. .|.....+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l---~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALEL---DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHH
Confidence 445566677777788888887777654 456666777777777778888888888877766 566677777777788
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAK 316 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 316 (652)
...|++++|..-|......+...+. ....++..+.. ..+........+.. .++...+. .+..+..........
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVT-FVGNYLQSFRPKPRP 277 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHH-HHHHHHHHccCCcch
Confidence 8888888887777655443211111 11111111111 11222222222211 11111111 111121111111111
Q ss_pred HHHHHHHcCCCCCCHHHHHHH---HHHHhcCChhHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 006281 317 ELGEVIVSGKFTIDDDVLNAL---IGSVSSIDPRSAIVFFNFMIEKG-RVP-TLSTLSNLSKNLCKRNKSDELVEVYKVL 391 (652)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~l---~~~~~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 391 (652)
.-++...+............. ...-..+++++|+..|+...+.+ ..| ....+..+...+...|++++|...++..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 278 AGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111110000000001111 11122357788888888887764 223 3455666777778888999999988888
Q ss_pred HhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH
Q 006281 392 SANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK 471 (652)
Q Consensus 392 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 471 (652)
.+..+. +...|..+...+...|++++|+..|++..+.... +..+|..+...+...|++++|...|++..+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 876433 4567778888888888999999998888776432 56778888888888899999999998888764 55677
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH------HHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS------ILST 545 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~~~ 545 (652)
.+..+..++.+.|++++|+..|++.++.. ..+...+..+...+...|++++|++.|++++...+..+.. .+..
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~ 513 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK 513 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence 77788888888899999999988888653 2256778888888888899999999988887765432211 1122
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
....+...|++++|.++++++.. +|.+...+..++.++.+.|++++|++.++++.+..+..
T Consensus 514 a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~ 575 (615)
T TIGR00990 514 ALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTE 575 (615)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccH
Confidence 22233446888889988888765 55566677788888888999999999888888876653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.5e-19 Score=187.74 Aligned_cols=429 Identities=10% Similarity=-0.032 Sum_probs=300.2
Q ss_pred cHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHH
Q 006281 191 GFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEE 270 (652)
Q Consensus 191 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 270 (652)
.+......+.+.|++++|+..|++.... .|. ...|..+..+|.+.|++++|++.++...+... .+...|..+..+
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~---~p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p-~~~~a~~~~a~a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC---KPD-PVYYSNRAACHNALGDWEKVVEDTTAALELDP-DYSKALNRRANA 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence 3445566777889999999999998876 443 56777788899999999999999999887532 256688888899
Q ss_pred HHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 006281 271 FKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (652)
Q Consensus 271 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (652)
|...|++++|+..|......+...+ .....++..+.. ..+........+.... +...+..+-..+.........
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~-~~~~~~~~~~l~----~~a~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~ 277 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRN-EQSAQAVERLLK----KFAESKAKEILETKPE-NLPSVTFVGNYLQSFRPKPRP 277 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHH----HHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHccCCcch
Confidence 9999999999888876654422111 111222222211 1222222222222211 111111111111111111111
Q ss_pred HHHHHHHHcCCCCCH-HHHHHHHH---HHHhcCChHHHHHHHHHHHhCC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 351 VFFNFMIEKGRVPTL-STLSNLSK---NLCKRNKSDELVEVYKVLSAND-YFT-DMESYNVMVSFLCTSGRLREAYGVIQ 424 (652)
Q Consensus 351 ~~~~~m~~~~~~~~~-~~~~~l~~---~~~~~~~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~g~~~~a~~~~~ 424 (652)
.-+....+ ..+.. ..+..+.. -....+++++|.+.|+...+.+ ..| ....|..+...+...|++++|+..|+
T Consensus 278 ~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ 355 (615)
T TIGR00990 278 AGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLS 355 (615)
T ss_pred hhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 11111111 11110 00111110 1123478999999999998764 222 45578888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006281 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 425 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
+..+.... +...|..+...+...|++++|...|+.+.+.. +.+...|..+...|...|++++|+..|++.++.... +
T Consensus 356 kal~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~ 432 (615)
T TIGR00990 356 KSIELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-F 432 (615)
T ss_pred HHHHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-C
Confidence 99887322 35678888889999999999999999998875 567889999999999999999999999999976432 5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHH------
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHV------ 577 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~------ 577 (652)
...+..+...+.+.|++++|+..|++++...+. ++..+..+..++...|++++|++.+++... .|.....+.
T Consensus 433 ~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 433 IFSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHH
Confidence 677888888999999999999999999887665 678899999999999999999999999876 333322221
Q ss_pred HHHH-HHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLK-SLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
..+. .+...|++++|+++++++.+.+|+.. ..+..++.++.+.|++++|.+.+++..+.
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~-~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIIDPECD-IAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 1122 23346999999999999999999874 45666999999999999999999988765
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-20 Score=188.03 Aligned_cols=308 Identities=16% Similarity=0.128 Sum_probs=251.8
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHHH
Q 006281 334 LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSFL 410 (652)
Q Consensus 334 ~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~ 410 (652)
|...+.....+++++|+..|.++.+.+. .+..++..+...+...|++++|..+++.+...+..++ ...+..++..|
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHH
Confidence 3344455667788888888888887642 3566788888899999999999999999887643222 24678889999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGEI 486 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 486 (652)
.+.|++++|..+|+++.+.. .++..+++.++..+.+.|++++|.+.++.+.+.+..+. ...+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 99999999999999998763 34678899999999999999999999999988652222 22456777888999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
++|...|+++.+... .+...+..+...+.+.|++++|.++|+++...++.....++..++.+|...|++++|.+.++++
T Consensus 197 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 197 DAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999997542 2466788888999999999999999999998766544667888999999999999999999999
Q ss_pred hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc---CCCCchHHHHHHHHHHcccccCC
Q 006281 567 SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS---SSYPEPILLLLHALQEKCLDSEI 643 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~ 643 (652)
....++...+..++..+.+.|++++|+..++++.+..|+.. .++.++..+.. .|+.+++...+++|.+++++++|
T Consensus 276 ~~~~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~--~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 276 LEEYPGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR--GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHhCCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH--HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCC
Confidence 88544556668899999999999999999999999988763 34435555543 66999999999999999999999
Q ss_pred CCC
Q 006281 644 GAG 646 (652)
Q Consensus 644 ~~~ 646 (652)
...
T Consensus 354 ~~~ 356 (389)
T PRK11788 354 RYR 356 (389)
T ss_pred CEE
Confidence 854
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-19 Score=187.87 Aligned_cols=369 Identities=10% Similarity=0.004 Sum_probs=255.0
Q ss_pred HHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 236 FCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
+.+..+++.-.-.|..-.+. .-.-+..-...++..+.+.|++++|..+++........+.. .+..++.+....|+++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~ 93 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPD 93 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHH
Confidence 45677777766666654432 01112333455667778888888888888888776544433 3334445666688888
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 393 (652)
.|...++.+....+................|++++|+..+++..+.. +.+...+..+...+...|++++|...++.+..
T Consensus 94 ~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~ 172 (656)
T PRK15174 94 AVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQ 172 (656)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 88888888887654433333333333455678888888888887653 22456677777788888888888888887766
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006281 394 NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (652)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 473 (652)
.... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|...++.+.+.. +.+...+
T Consensus 173 ~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~ 249 (656)
T PRK15174 173 EVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALR 249 (656)
T ss_pred hCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHH
Confidence 5443 23333333 3467788888888888887766433344455555667778888888888888888764 5567777
Q ss_pred HHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 474 NILISKFSEVGEIEG----ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..+...|...|++++ |...|++..+.... +...+..+...+...|++++|...+++++...+. +...+..+..+
T Consensus 250 ~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~ 327 (656)
T PRK15174 250 RSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARA 327 (656)
T ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 778888888888875 78888888765332 5667777888888888888888888888877765 56667778888
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (652)
+.+.|++++|++.++++.. .|..+..+..++.++...|++++|++.++++.+..|+.....|
T Consensus 328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~ 390 (656)
T PRK15174 328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSF 390 (656)
T ss_pred HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhH
Confidence 8888888888888888776 4444444445677778888888888888888888777654433
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-18 Score=182.73 Aligned_cols=354 Identities=14% Similarity=0.092 Sum_probs=235.2
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (652)
++..+.+.|+++.|..+++..... .|.+......++.+....|++++|...|+++..... .+...+..+...+...
T Consensus 48 ~~~~~~~~g~~~~A~~l~~~~l~~---~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 48 FAIACLRKDETDVGLTLLSDRVLT---AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNV-CQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHhcCCcchhHHHhHHHHHh---CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHc
Confidence 333444555555555555555544 334344444444444555555555555555554321 1333444455555555
Q ss_pred CCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHH
Q 006281 275 GSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFF 353 (652)
Q Consensus 275 g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (652)
|++++|...+++..+. .|+ ...+..+...+...|++++|...++.+.
T Consensus 124 g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~------------------------------ 171 (656)
T PRK15174 124 KQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQA------------------------------ 171 (656)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHH------------------------------
Confidence 5555555555555442 222 2233333444444444444444433322
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006281 354 NFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP 433 (652)
Q Consensus 354 ~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p 433 (652)
..... +...+..+ ..+...|++++|...++.+.+....++...+..+..++...|++++|+..++++......
T Consensus 172 ----~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~- 244 (656)
T PRK15174 172 ----QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD- 244 (656)
T ss_pred ----HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-
Confidence 22111 22223233 347889999999999999887754445555666678899999999999999999987533
Q ss_pred CHHHHHHHHHHHHhcCChhh----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 434 DVSFYNSLMEACCREDLLRP----AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+...+..+...+...|++++ |...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+.
T Consensus 245 ~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~ 322 (656)
T PRK15174 245 GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRA 322 (656)
T ss_pred CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 57778889999999999986 899999999874 567789999999999999999999999999976433 466777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+..++.+.|++++|.+.|+++...++. +...+..+..++...|+.++|.+.++++.+ +|... ...
T Consensus 323 ~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~------------~~~ 389 (656)
T PRK15174 323 MYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL------------PQS 389 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc------------hhh
Confidence 8889999999999999999999887765 334455567789999999999999999877 44432 244
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006281 589 VEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~ 606 (652)
+++|...+.++.+.-+..
T Consensus 390 ~~ea~~~~~~~~~~~~~~ 407 (656)
T PRK15174 390 FEEGLLALDGQISAVNLP 407 (656)
T ss_pred HHHHHHHHHHHHHhcCCc
Confidence 456666676666654433
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=8e-18 Score=180.58 Aligned_cols=423 Identities=13% Similarity=0.060 Sum_probs=242.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
.++.-..-.+.+....|+.++|++++.+..... +.+...+..+...+...|++++|.++|++.....+ .+...+..+.
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 344445556666667777777777777766532 44555566777777777777777777777655422 1344555666
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC
Q 006281 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 241 (652)
..+...|++++|+..+++..+.. +.+.. +..+..++...|+.++|+..++++.+. .|.+...+..+...+...|.
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~---~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPR---APQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCC
Confidence 66666677777777766666542 11223 555555555666666666666666655 45555555555555555566
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
.+.|++.++.... .|+... -+ ....+.. ++......+
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~---~l-------~~~~~~~-------------------~~r~~~~~~----------- 202 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKR---DL-------EADAAAE-------------------LVRLSFMPT----------- 202 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHH---HH-------HHHHHHH-------------------HHHhhcccc-----------
Confidence 6666655554432 122000 00 0000000 000000000
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhC-CCC
Q 006281 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---DELVEVYKVLSAN-DYF 397 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~-~~~ 397 (652)
....+++ ++|+..++.+.+. ...
T Consensus 203 -----------------------------------------------------~~~~~r~~~ad~Al~~~~~ll~~~~~~ 229 (765)
T PRK10049 203 -----------------------------------------------------RSEKERYAIADRALAQYDALEALWHDN 229 (765)
T ss_pred -----------------------------------------------------cChhHHHHHHHHHHHHHHHHHhhcccC
Confidence 0000111 2333333333321 011
Q ss_pred cCHH-H----HHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---
Q 006281 398 TDME-S----YNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--- 468 (652)
Q Consensus 398 ~~~~-~----~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--- 468 (652)
|+.. . ....+.++...|++++|+..|+++.+.+.. |+. ....+..++...|++++|+..|+++.+..-..
T Consensus 230 p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~ 308 (765)
T PRK10049 230 PDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADL 308 (765)
T ss_pred CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCC
Confidence 1110 0 000122233445666666666666555321 221 11113445566666666666666655432000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----------CCCCH---hhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKG-----------VAPDA---TTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.......+..++...|++++|.++++.+.+.. -.|+. ..+..+...+...|++++|++++++++..
T Consensus 309 ~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~ 388 (765)
T PRK10049 309 SDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN 388 (765)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 12334445555566666666666666665431 12332 24456677888899999999999999888
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+. +...+..++..+...|++++|++.++++.. +|.++..+...+..+...|++++|+..++++.+..|++..+
T Consensus 389 ~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 389 APG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 776 688899999999999999999999999887 67777888888889999999999999999999999988533
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.4e-19 Score=177.83 Aligned_cols=301 Identities=13% Similarity=0.069 Sum_probs=144.3
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCC--chhhHHHHHHHHHccC
Q 006281 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMIN--GSVIAVLIIHGFCKGK 240 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g 240 (652)
.+...|+++.|...|+++.+.+. .+..++..+...+...|++++|..+++.+... +..++ ....+..++..|.+.|
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~~~~~~g 121 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQDYLKAG 121 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHHHHHHCC
Confidence 34455666666666666665431 12334555555555566666666666655543 11111 1123445555555566
Q ss_pred CHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 241 RVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGE 320 (652)
Q Consensus 241 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~ 320 (652)
++++|..+|+++.+.. .++..++..++..+.+.|++++|.+.++.+.+.+..+....
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---------------------- 178 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE---------------------- 178 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH----------------------
Confidence 6666666666555431 22444555555555555555555555555544322111000
Q ss_pred HHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 321 VIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 321 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
....+..+...+.+.|++++|...|+++.+.... +.
T Consensus 179 -------------------------------------------~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~ 214 (389)
T PRK11788 179 -------------------------------------------IAHFYCELAQQALARGDLDAARALLKKALAADPQ-CV 214 (389)
T ss_pred -------------------------------------------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcC-CH
Confidence 0011222333344445555555555554443221 23
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
..+..+...+.+.|++++|.++|+++.+.+......+++.+..+|...|++++|.+.++.+.+. .|+...+..++..+
T Consensus 215 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~ 292 (389)
T PRK11788 215 RASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLL 292 (389)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHH
Confidence 3444455555555555555555555554322111234445555555555555555555555543 23334445555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhCCC
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~ 536 (652)
.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..+++++++.++
T Consensus 293 ~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 293 EEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 5555555555555555443 3455555544444432 2355555555555554443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5e-18 Score=182.18 Aligned_cols=219 Identities=12% Similarity=0.054 Sum_probs=170.1
Q ss_pred HHHHHHHHHHHHc-CCCCCHH-HH----HHHHHHHHhcCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 006281 417 REAYGVIQEMKRK-GLDPDVS-FY----NSLMEACCREDLLRPAKKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 417 ~~a~~~~~~~~~~-~~~p~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A 489 (652)
++|++.++.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|
T Consensus 213 d~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A 291 (765)
T PRK10049 213 DRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA 291 (765)
T ss_pred HHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence 7888899988854 2233321 11 11134456779999999999999987522 222 223357789999999999
Q ss_pred HHHHHHHHHCCCCC---CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----------Ccc---HHHHHHHHHHHHh
Q 006281 490 LRLFHNMLEKGVAP---DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV-----------MLA---RSILSTFMISLCR 552 (652)
Q Consensus 490 ~~~~~~m~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~ 552 (652)
+..|+++.+..... .......+..++...|++++|.++++++....+ .|+ ...+..++..+..
T Consensus 292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~ 371 (765)
T PRK10049 292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY 371 (765)
T ss_pred HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence 99999988653221 134566677788999999999999999887643 122 2345677888999
Q ss_pred cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHH
Q 006281 553 RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
.|++++|+++++++.. .|.++..+..++..+...|++++|++.++++.+..|+.....+. ++..+...|++++|++.+
T Consensus 372 ~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~-~a~~al~~~~~~~A~~~~ 450 (765)
T PRK10049 372 SNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVE-QAWTALDLQEWRQMDVLT 450 (765)
T ss_pred cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHH-HHHHHHHhCCHHHHHHHH
Confidence 9999999999999877 78888889999999999999999999999999999998765555 777899999999999999
Q ss_pred HHHHHc
Q 006281 632 HALQEK 637 (652)
Q Consensus 632 ~~~~~~ 637 (652)
+++.+.
T Consensus 451 ~~ll~~ 456 (765)
T PRK10049 451 DDVVAR 456 (765)
T ss_pred HHHHHh
Confidence 998875
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.7e-16 Score=163.41 Aligned_cols=461 Identities=12% Similarity=0.021 Sum_probs=243.7
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCH--HhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 006281 92 KSLSLSRQINAIDSVLKQVKVNKITLDS--SVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGY 169 (652)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~ 169 (652)
-...+.|++..|...|++..+.. |+. ..+ .++..+...|+.++|+..+++..... .........+...+...|+
T Consensus 42 ii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~~~gd 117 (822)
T PRK14574 42 IIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYRNEKR 117 (822)
T ss_pred HHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCC
Confidence 34558888888888888888765 332 334 77777778888888888888876211 1112222233456777788
Q ss_pred hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHH
Q 006281 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVL 249 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 249 (652)
+++|+++|+++.+.... +...+..++..+...++.++|++.++++... .|. ...+..++..+...++..+|++.+
T Consensus 118 yd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~---dp~-~~~~l~layL~~~~~~~~~AL~~~ 192 (822)
T PRK14574 118 WDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER---DPT-VQNYMTLSYLNRATDRNYDALQAS 192 (822)
T ss_pred HHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc---Ccc-hHHHHHHHHHHHhcchHHHHHHHH
Confidence 88888888888876432 3455556666777778888888888887766 333 223333444444455555588888
Q ss_pred HHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCC
Q 006281 250 DELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTI 329 (652)
Q Consensus 250 ~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 329 (652)
+++.+.. +-+...+..++.++.+.|-...|+++..+ .|+..+-...... +.+.+.+..+........
T Consensus 193 ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~------~p~~f~~~~~~~l-----~~~~~a~~vr~a~~~~~~- 259 (822)
T PRK14574 193 SEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKE------NPNLVSAEHYRQL-----ERDAAAEQVRMAVLPTRS- 259 (822)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHh------CccccCHHHHHHH-----HHHHHHHHHhhccccccc-
Confidence 8887763 22555667777777777777777766544 2222111111000 000000000000000000
Q ss_pred CHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCH-----HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHH
Q 006281 330 DDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTL-----STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESY 403 (652)
Q Consensus 330 ~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 403 (652)
...-+. -.+.|+.-++.+... +..|.. ....-.+-++.+.+++.++++.|+.+...+.+....+-
T Consensus 260 ~~~r~~---------~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~ 330 (822)
T PRK14574 260 ETERFD---------IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYAR 330 (822)
T ss_pred chhhHH---------HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHH
Confidence 000000 113344444444331 111211 11112233455556666666666666655543334455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHH
Q 006281 404 NVMVSFLCTSGRLREAYGVIQEMKRKGL-----DPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN-LKTYNILI 477 (652)
Q Consensus 404 ~~li~~~~~~g~~~~a~~~~~~~~~~~~-----~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 477 (652)
..+.++|...+++++|..+|+++..... .++......|.-++...+++++|..+++.+.+. .|. ...|
T Consensus 331 ~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~--~p~~~~~~---- 404 (822)
T PRK14574 331 RWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ--TPYQVGVY---- 404 (822)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCcEEecc----
Confidence 5566666666666666666666544321 112222344555555555566666555555542 120 0000
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
|.. .....||-. .+..++..+...|+..+|.+.++++....|. |..+...+...+...|.+
T Consensus 405 ------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p 466 (822)
T PRK14574 405 ------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLP 466 (822)
T ss_pred ------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence 000 001122222 2223344455666666666666666655554 666666666666666666
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.+|++.++.+.. +|.+.......+.++...|++++|..+.+.+.+..|++.
T Consensus 467 ~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 467 RKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 666666655544 444455555666666666666666666666666666654
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.6e-16 Score=161.81 Aligned_cols=443 Identities=14% Similarity=0.078 Sum_probs=285.2
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCccc-HHHH--HHHHHhc
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIG-FGVF--IWKFCEN 202 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~l--l~~~~~~ 202 (652)
+-...+.|+++.|++.|++..+....-.+..+ .++..+...|+.++|+..+++.. .|+... +..+ ...+...
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNE 115 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHc
Confidence 33456889999999999998876433112344 88888888899999999998887 232222 2223 4466677
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREV 282 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~ 282 (652)
|++++|+++++++.+. .|.++.++..++..+...++.++|++.++.+... .|+...+..++..+...++..+|++
T Consensus 116 gdyd~Aiely~kaL~~---dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~ 190 (822)
T PRK14574 116 KRWDQALALWQSSLKK---DPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQ 190 (822)
T ss_pred CCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHH
Confidence 9999999999999988 7777777778888889999999999999988775 4555555444444444566656888
Q ss_pred HHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 283 VLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 283 ~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
.++++.+.. |+ ...+..+..++.+.|-...|.++...-...-
T Consensus 191 ~~ekll~~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f----------------------------------- 233 (822)
T PRK14574 191 ASSEAVRLA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLV----------------------------------- 233 (822)
T ss_pred HHHHHHHhC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCcccc-----------------------------------
Confidence 888888763 43 4455566666667776666666544321100
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCH-HH--
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDV-SF-- 437 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~-~~-- 437 (652)
+......+ +.+.+.+..+. ...++.. - -. +---.+.|+.-++.+... +..|.. ..
T Consensus 234 --~~~~~~~l--------~~~~~a~~vr~----a~~~~~~-~---~~---r~~~~d~ala~~~~l~~~~~~~p~~~~~~~ 292 (822)
T PRK14574 234 --SAEHYRQL--------ERDAAAEQVRM----AVLPTRS-E---TE---RFDIADKALADYQNLLTRWGKDPEAQADYQ 292 (822)
T ss_pred --CHHHHHHH--------HHHHHHHHHhh----ccccccc-c---hh---hHHHHHHHHHHHHHHHhhccCCCccchHHH
Confidence 00000000 00001111100 0000000 0 00 000134444444444431 111221 11
Q ss_pred --HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHH
Q 006281 438 --YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-----VAPDATTYTS 510 (652)
Q Consensus 438 --~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~ 510 (652)
..=.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|+.+|+.+.... ..++......
T Consensus 293 ~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~ 372 (822)
T PRK14574 293 RARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADD 372 (822)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHH
Confidence 112234556667777777777777766544445566667777777777777777777765432 1223333456
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCC-----------CccH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDV-----------MLAR---SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
|.-++...+++++|..+++++.+..+ .|++ ..+..++..+.-.|++.+|++.++++.. .|.+...
T Consensus 373 L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l 452 (822)
T PRK14574 373 LYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNL 452 (822)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 77777777777777777777665322 2332 3355567778899999999999999977 7888889
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...++.++...|++.+|++.++.+...+|......+. .+..+...|+|.+|..+.+.+.+.
T Consensus 453 ~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~-~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 453 RIALASIYLARDLPRKAEQELKAVESLAPRSLILERA-QAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH-HHHHHHhhhhHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999988555554 888899999999999999777655
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-13 Score=138.25 Aligned_cols=585 Identities=10% Similarity=0.020 Sum_probs=331.2
Q ss_pred CCCHHHHH---HhhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH
Q 006281 46 SLSPSLVA---RVINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY 122 (652)
Q Consensus 46 ~~~~~~~~---~~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 122 (652)
.++|++.. ..-..+++++.+.|..++..+.++.+ .....|..|..+|-..|+.+.+...+-.+-..+ +-|...|
T Consensus 134 ~l~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp--~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W 210 (895)
T KOG2076|consen 134 KLAPELRQLLGEANNLFARGDLEEAEEILMEVIKQDP--RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELW 210 (895)
T ss_pred ccCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc--cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHH
Confidence 35554432 33334567788888888888877655 355668888888888888888887776665554 5667888
Q ss_pred HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHH----HHHH
Q 006281 123 RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGV----FIWK 198 (652)
Q Consensus 123 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~----ll~~ 198 (652)
..+.....+.|+++.|.-+|.+..+..+. +...+---...|-+.|+...|..-|.++.....+.|..-+.. +++.
T Consensus 211 ~~ladls~~~~~i~qA~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~ 289 (895)
T KOG2076|consen 211 KRLADLSEQLGNINQARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHY 289 (895)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHH
Confidence 88888888889999999999888877433 333334456677888888888888888887654333333333 3344
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH---------------
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA--------------- 263 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~--------------- 263 (652)
+...++-+.|++.++..... +....+...++.++..|.+...++.|......+......+|..-
T Consensus 290 ~~~~~~~e~a~~~le~~~s~-~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~ 368 (895)
T KOG2076|consen 290 FITHNERERAAKALEGALSK-EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALC 368 (895)
T ss_pred HHHhhHHHHHHHHHHHHHhh-ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccc
Confidence 55567778888888888775 33444555667788888888888888888777765222222111
Q ss_pred -------HH----HHHHHHHhcCCHHHHHHHHHHHHhcCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCC
Q 006281 264 -------YR----IVAEEFKLMGSVFEREVVLKKKRKLGV--APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTID 330 (652)
Q Consensus 264 -------~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 330 (652)
|. -++-++.+....+....+...+....+ .-+...|..+..++...|.+.+|..++..+......-+
T Consensus 369 ~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~ 448 (895)
T KOG2076|consen 369 EVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN 448 (895)
T ss_pred cCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc
Confidence 11 122333444444444444455555543 33444667777788888888888888888877665555
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------CCCcCHH
Q 006281 331 DDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------DYFTDME 401 (652)
Q Consensus 331 ~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~ 401 (652)
..+|-.+-.++. .+.+++|++.|+..+..... +...-..|...+.+.|+.++|.+.+..+... +..|+..
T Consensus 449 ~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~r 527 (895)
T KOG2076|consen 449 AFVWYKLARCYMELGEYEEAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERR 527 (895)
T ss_pred hhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHH
Confidence 566655555544 46788888888887764321 2333445555677788888888888775422 2333333
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCC-----------------CHHH----------------------
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKG-----LDP-----------------DVSF---------------------- 437 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~-----~~p-----------------~~~~---------------------- 437 (652)
........+.+.|+.++-+.+-..|...+ +-| ...+
T Consensus 528 i~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~ 607 (895)
T KOG2076|consen 528 ILAHRCDILFQVGKREEFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALS 607 (895)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhccc
Confidence 44444555666666665444443333211 000 0000
Q ss_pred ---------------------HHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCH---HHHHHHHHHHHhcCCHHHHHH
Q 006281 438 ---------------------YNSLMEACCREDLLRPAKKLWDQMFASGC--SGNL---KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 438 ---------------------~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~A~~ 491 (652)
+.-++.++++.++.++|..+...+.+... .++. ..-...+.+....+++..|..
T Consensus 608 d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~ 687 (895)
T KOG2076|consen 608 DGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFS 687 (895)
T ss_pred chhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 12223333344444444444444433210 0111 111222333334444444444
Q ss_pred HHHHHHHC-CC--CCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 492 LFHNMLEK-GV--APD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 492 ~~~~m~~~-~~--~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.++.|... +. .|. ...|+...+.+.+.++-.--.+++.........-++.........+...+.+..|++.+-++-
T Consensus 688 ~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~ 767 (895)
T KOG2076|consen 688 YLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAF 767 (895)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHH
Confidence 44444422 11 010 112222233333333222222222222222211111122222233445566777777766665
Q ss_pred h-CCCCchhHHHHHHHHhc----------cccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 568 S-DLGHSDSHVILLKSLAD----------AREVEMAIEHIKWIQESSPT--MLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 568 ~-~~~~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
. .|.+|-....++.++.. +-..-+++..+++..+.... .-...|| ++.+|-..|-..-|..++++.
T Consensus 768 ~~~pd~Pl~nl~lglafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YN-igRayh~~gl~~LA~~YYekv 846 (895)
T KOG2076|consen 768 RQNPDSPLINLCLGLAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYN-IGRAYHQIGLVHLAVSYYEKV 846 (895)
T ss_pred HhCCCCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHH-HHHHHHHcccHHHHHHHHHHH
Confidence 5 55556555555555422 12234566666666655433 4455666 999999999999999999988
Q ss_pred HHc
Q 006281 635 QEK 637 (652)
Q Consensus 635 ~~~ 637 (652)
.+-
T Consensus 847 L~~ 849 (895)
T KOG2076|consen 847 LEV 849 (895)
T ss_pred hCC
Confidence 765
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-14 Score=132.21 Aligned_cols=381 Identities=13% Similarity=0.112 Sum_probs=189.7
Q ss_pred chhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 006281 225 GSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFIL 304 (652)
Q Consensus 225 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 304 (652)
...++..||.+.++--..+.|.+++++-.....+.+..+||.+|.+-.-.. ..+++.+|....+.||..|||.+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHHHHH
Confidence 344555555555555555555555555555444555555555554432211 1445555555555555555555555
Q ss_pred HHHccCCHHHHHH----HHHHHHcCCCCCCHHHHHHHHHHHhc-CChh-HHHHHHHHHH----HcCCCC----CHHHHHH
Q 006281 305 GLIVERRICEAKE----LGEVIVSGKFTIDDDVLNALIGSVSS-IDPR-SAIVFFNFMI----EKGRVP----TLSTLSN 370 (652)
Q Consensus 305 ~~~~~~~~~~a~~----~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~-~a~~~~~~m~----~~~~~~----~~~~~~~ 370 (652)
+..+.|+++.|.. ++.+|.+.|+.|...+|..++..+++ ++.. .+..++.++. .+..+| +...|..
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~ 361 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQS 361 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHH
Confidence 5555555544332 22223333333333333333322221 1111 1222233222 222222 3444555
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCC----CCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSAND----YFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
.+..|.+..+.+.|.++..-+.... +.|+ ..-|..+..+.|+....+..+..|+.|.-.-.-|+..+-..+++
T Consensus 362 AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lr 441 (625)
T KOG4422|consen 362 AMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLR 441 (625)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHH
Confidence 5666666666666666655544321 1111 12344555556666666666666666665555566666666666
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHcCCC
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLEGLCQETN 520 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~ 520 (652)
+..-.+.++-.-++|.+++..|.. ++. +--++++..|.+..+.|+.. -+.....-|. -+
T Consensus 442 A~~v~~~~e~ipRiw~D~~~~ght-----~r~-----------~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~a--ad 503 (625)
T KOG4422|consen 442 ALDVANRLEVIPRIWKDSKEYGHT-----FRS-----------DLREEILMLLARDKLHPLTPEREQLQVAFAKCA--AD 503 (625)
T ss_pred HHhhcCcchhHHHHHHHHHHhhhh-----hhH-----------HHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHH--HH
Confidence 666666666666666666654421 111 11122233333322233222 2222221111 11
Q ss_pred HHHHHH-HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHH---HHHHHHhccccHHHHH
Q 006281 521 LQAAFE-VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHV---ILLKSLADAREVEMAI 593 (652)
Q Consensus 521 ~~~a~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~---~l~~~~~~~g~~~~A~ 593 (652)
+.++.+ .-.++.+. ...+...+.++-.+.+.|..++|.+++..+... -+..+..+ -+...-...+....|+
T Consensus 504 ~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~ 581 (625)
T KOG4422|consen 504 IKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAI 581 (625)
T ss_pred HHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHH
Confidence 222211 11223333 345567888888899999999999999888542 22223333 4556667788889999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
..++-+...+...-..+.+.+...+.-+..-.+|++
T Consensus 582 ~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 582 EVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred HHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 999988776654434444445555544444344443
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.5e-15 Score=133.85 Aligned_cols=244 Identities=15% Similarity=0.090 Sum_probs=190.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
+.+..||..+|..+++--..+.|.+++++..+...+.+..+||.+|.+-+-. ...+++.+|......||..|+|++
T Consensus 204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K~Lv~EMisqkm~Pnl~TfNal 279 (625)
T KOG4422|consen 204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGKKLVAEMISQKMTPNLFTFNAL 279 (625)
T ss_pred CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccHHHHHHHHHhhcCCchHhHHHH
Confidence 3467889999999999999999999999999888889999999999775533 237889999999999999999999
Q ss_pred HHHHHhcCChhh----HHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHH-HHHHHHHHHHhc------cCCCCCchhhH
Q 006281 161 LAVLASDGYIDN----ALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLG-QVLSMLDEVRKR------ENSMINGSVIA 229 (652)
Q Consensus 161 l~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~------~~~~~~~~~~~ 229 (652)
+.+.++.|+++. |.+++.+|++-|+.|...+|..+|..+++.++.. .+..++..+... ....|.+...+
T Consensus 280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 999999998765 5677888999999999999999999999887764 355555555432 13355666777
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHhhC----CCCcCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 230 VLIIHGFCKGKRVEEAFKVLDELRIR----ECKPDFI---AYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 230 ~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
...+..|.+..+.+-|.++-.-.... -+.|+.. -|..+....|+....+.....|+.|.-.-..|+..+...+
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 77788888888888888877665432 1334322 3566777778888888888888888887788888888888
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCC
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFT 328 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~ 328 (652)
+++.-..+.++...+++..++..|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhh
Confidence 88888888888887777776665533
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.4e-12 Score=122.97 Aligned_cols=453 Identities=11% Similarity=0.012 Sum_probs=257.8
Q ss_pred CChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHH
Q 006281 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (652)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 247 (652)
.+.+.|.-++.+..+. ++.+.. |.-++++..-++.|..++++..+. .|.+..+|.+-...--.+|+.+...+
T Consensus 390 E~~~darilL~rAvec-cp~s~d----LwlAlarLetYenAkkvLNkaRe~---iptd~~IWitaa~LEE~ngn~~mv~k 461 (913)
T KOG0495|consen 390 EEPEDARILLERAVEC-CPQSMD----LWLALARLETYENAKKVLNKAREI---IPTDREIWITAAKLEEANGNVDMVEK 461 (913)
T ss_pred cChHHHHHHHHHHHHh-ccchHH----HHHHHHHHHHHHHHHHHHHHHHhh---CCCChhHHHHHHHHHHhcCCHHHHHH
Confidence 3444455555555443 111111 222445555566666666666655 55555566554444455666666665
Q ss_pred HHHHH----hhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 248 VLDEL----RIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRT--NDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 248 ~~~~m----~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
++.+- ...|+..+...|-.=...|-..|..-.+..+.......|+.-.. .|+..-...|.+.+.++-+..+|..
T Consensus 462 ii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~ 541 (913)
T KOG0495|consen 462 IIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAH 541 (913)
T ss_pred HHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHH
Confidence 55432 33455666666665556666666666666666655555544322 2555555566666666666666665
Q ss_pred HHcCCCCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 322 IVSGKFTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
.++-. +.+..+|..+...- ..|..++-..+|.+....- +-....+-.....+-..|++..|..++....+.... +.
T Consensus 542 alqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-se 618 (913)
T KOG0495|consen 542 ALQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SE 618 (913)
T ss_pred HHhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cH
Confidence 55542 22333444443332 2355555555565555442 223334444445555556666666666666655444 55
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
..|-.-+.....+..++.|..+|.+.... .|+...|.--+...-..+..++|.+++++.++. ++.-...|..+.+.+
T Consensus 619 eiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 619 EIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 55666666666666666666666665543 345555554444445556666666666666554 122234555555666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
-+.++++.|.+.|..-.+. +.-....|..|.+.=-+.|.+-.|..++++..-.++. +...|-..++.-.+.|+.+.|.
T Consensus 696 e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~ 773 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAE 773 (913)
T ss_pred HHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHH
Confidence 6666666666666554432 1213344555555555556666666666666655555 5556666666666666666665
Q ss_pred HHHHHhhhC-------------------------------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 561 KLLRGLSSD-------------------------------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 561 ~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+..++.++ ..++.....++..+....++++|.+.|.++.+.+|+. ..
T Consensus 774 ~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~-GD 852 (913)
T KOG0495|consen 774 LLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN-GD 852 (913)
T ss_pred HHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc-ch
Confidence 555444332 1233344567777778888999999999999999877 55
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.|.-+...+.++|.-++-.+++.++...
T Consensus 853 ~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 853 AWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 5555777788899888888888877764
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-13 Score=138.63 Aligned_cols=190 Identities=13% Similarity=0.050 Sum_probs=136.1
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
+...|+.++|.+++.++++.. +.....|..|...|-..|+.+++...+-...-..++ |...|-.+.....+.|+++.|
T Consensus 149 lfarg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA 226 (895)
T KOG2076|consen 149 LFARGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQA 226 (895)
T ss_pred HHHhCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHH
Confidence 344588888988888888876 677788888888888888888888877666554433 567888888888888888888
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhh-H----HHHHHHHHccCCHHHHHHH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVI-A----VLIIHGFCKGKRVEEAFKV 248 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~----~~l~~~~~~~g~~~~A~~~ 248 (652)
.-.|.+..+.... +...+---...|-+.|+...|...|.++.+. .|+...- . ...++.|...++-+.|.+.
T Consensus 227 ~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~---~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~ 302 (895)
T KOG2076|consen 227 RYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQL---DPPVDIERIEDLIRRVAHYFITHNERERAAKA 302 (895)
T ss_pred HHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 8888888887532 3333333445677788888888888888876 3322111 1 1345667777777888888
Q ss_pred HHHHhhC-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 249 LDELRIR-ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 249 ~~~m~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
++..... +-..+...+++++..+.+...++.+......+..
T Consensus 303 le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~ 344 (895)
T KOG2076|consen 303 LEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRN 344 (895)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhc
Confidence 8776652 2223455677788888888888888887777766
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.1e-14 Score=133.72 Aligned_cols=479 Identities=11% Similarity=0.008 Sum_probs=299.8
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhH-HHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH---
Q 006281 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC-NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI--- 196 (652)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll--- 196 (652)
++..|..-|.......+|+..|+-+++...-|+.-.. -.+...+.+...+.+|++.|......-...+..+-..++
T Consensus 203 vl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~ni 282 (840)
T KOG2003|consen 203 VLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNI 282 (840)
T ss_pred HHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhc
Confidence 3444555566667778888888888777666665433 234556777778888888887766543333333332222
Q ss_pred -HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCc------------CHHH
Q 006281 197 -WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKP------------DFIA 263 (652)
Q Consensus 197 -~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------------~~~~ 263 (652)
..+.+.|.++.|+..|+...+. .|+-...+|.++ ++.--|+-++..+.|.+|...-..| +...
T Consensus 283 gvtfiq~gqy~dainsfdh~m~~---~pn~~a~~nl~i-~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~l 358 (840)
T KOG2003|consen 283 GVTFIQAGQYDDAINSFDHCMEE---APNFIAALNLII-CAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNL 358 (840)
T ss_pred CeeEEecccchhhHhhHHHHHHh---CccHHhhhhhhh-hheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHH
Confidence 2355678888888888888776 566555566444 4556778888888888876542222 2222
Q ss_pred HHHHH-----HHHHhcC--CHHHHHHHHHHHHhcCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHH
Q 006281 264 YRIVA-----EEFKLMG--SVFEREVVLKKKRKLGVAPRTN-DYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLN 335 (652)
Q Consensus 264 ~~~ll-----~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 335 (652)
.+.-+ +-+-+.. +.++++-.-.++..--+.|+.. -+...+..+-.....+.|.+ .-.|
T Consensus 359 l~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d--------------lei~ 424 (840)
T KOG2003|consen 359 LNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID--------------LEIN 424 (840)
T ss_pred HHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh--------------hhhh
Confidence 22111 1111111 1111111111111112222211 11111111111111111111 1134
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhc
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK--RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTS 413 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 413 (652)
.....+.+|+++.|+++++-+.+++-+.-...-+.+-..+.- -.++..|.++-+......-. +......-...-..+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~n 503 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFAN 503 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeec
Confidence 445667789999999999998877644333333333222222 34566777766665543221 333333333334457
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
|++++|.+.|++.......-....||+ .-.+-..|++++|++.|-.+... +..+......+...|-...+...|++++
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfni-glt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNI-GLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 999999999999987633322333442 33467889999999999877653 2457778888899999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
.+.... +..|+..+..|...|-+.|+-..|.+.+-+.-.. ++.+..+...|...|....-+++|+.+|++..--.++.
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~ 659 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQ 659 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccH
Confidence 887754 4447888899999999999999999988764443 44588899999999999999999999999987643444
Q ss_pred hhHH-HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 574 DSHV-ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 574 ~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
.-|. .++.++.+.|++.+|.++|+.+..+.|.+... ...|+......|-
T Consensus 660 ~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldc-lkflvri~~dlgl 709 (840)
T KOG2003|consen 660 SKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDC-LKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHH-HHHHHHHhccccc
Confidence 4444 66666678999999999999999999988544 4447777666553
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.7e-13 Score=127.74 Aligned_cols=498 Identities=11% Similarity=0.001 Sum_probs=380.5
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 006281 92 KSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYID 171 (652)
Q Consensus 92 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~ 171 (652)
++.....+.+.|+-++.+..+. ++.+...|.++ ++..-++.|..+++...+. ++-+..+|.+-...=-.+|+.+
T Consensus 384 KaAVelE~~~darilL~rAvec-cp~s~dLwlAl----arLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~ 457 (913)
T KOG0495|consen 384 KAAVELEEPEDARILLERAVEC-CPQSMDLWLAL----ARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVD 457 (913)
T ss_pred HHHHhccChHHHHHHHHHHHHh-ccchHHHHHHH----HHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHH
Confidence 4445667777788888888775 35555555544 4456678888888888654 4447778877777777888888
Q ss_pred hHHHHHHH----HHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCC-CchhhHHHHHHHHHccCCHHHHH
Q 006281 172 NALKMFDE----MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI-NGSVIAVLIIHGFCKGKRVEEAF 246 (652)
Q Consensus 172 ~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~ 246 (652)
.+.++.++ +...|+..+...|..=...|-..|..-.+..+...+... |... +...+|+.-.+.|.+.+.++-|.
T Consensus 458 mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigi-gvEeed~~~tw~~da~~~~k~~~~~car 536 (913)
T KOG0495|consen 458 MVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGI-GVEEEDRKSTWLDDAQSCEKRPAIECAR 536 (913)
T ss_pred HHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhh-ccccchhHhHHhhhHHHHHhcchHHHHH
Confidence 88888765 345678888888888777888888888888888888766 4333 33456777778888888899898
Q ss_pred HHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCC
Q 006281 247 KVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK 326 (652)
Q Consensus 247 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 326 (652)
.+|....+- .+-+...|......--..|..++...+|.+....-. -....+.......-..|++..|..++..+.+..
T Consensus 537 AVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~ 614 (913)
T KOG0495|consen 537 AVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN 614 (913)
T ss_pred HHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC
Confidence 888888764 233556677666666677888888888888877532 233344444556667799999999998888876
Q ss_pred CCCCHHHHHHHHHHH-hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-HHHHH
Q 006281 327 FTIDDDVLNALIGSV-SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD-MESYN 404 (652)
Q Consensus 327 ~~~~~~~~~~l~~~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~ 404 (652)
+. +...|-+.+... .+..++.|..+|.+... ..|+...|..-+...--.++.++|.+++++..+.- |+ ...|-
T Consensus 615 pn-seeiwlaavKle~en~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--p~f~Kl~l 689 (913)
T KOG0495|consen 615 PN-SEEIWLAAVKLEFENDELERARDLLAKARS--ISGTERVWMKSANLERYLDNVEEALRLLEEALKSF--PDFHKLWL 689 (913)
T ss_pred CC-cHHHHHHHHHHhhccccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--CchHHHHH
Confidence 55 666777777664 44688999999988765 45677777777777777899999999999888762 33 44777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 405 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
.+.+.+-+.++.+.|.+.|..-.+. ++-....|..+...--+.|.+..|..++++..-.+ +.+...|-..|..-.+.|
T Consensus 690 mlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~g 767 (913)
T KOG0495|consen 690 MLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAG 767 (913)
T ss_pred HHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcC
Confidence 7888999999999999999876655 23355678888888888899999999999998876 778899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLR 564 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 564 (652)
+.+.|..+..+.++. +..+...|..-|....+.++-......++++ .-|+.++-.+...+-...++++|.+.|.
T Consensus 768 n~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~ 841 (913)
T KOG0495|consen 768 NKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFE 841 (913)
T ss_pred CHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998875 4446778888888887777765665555543 2366688888999999999999999999
Q ss_pred Hhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHH
Q 006281 565 GLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612 (652)
Q Consensus 565 ~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (652)
+... ++...++|.-+...+..+|.-+.-.+++.......|.. ...|.
T Consensus 842 Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~~EP~h-G~~W~ 889 (913)
T KOG0495|consen 842 RAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCETAEPTH-GELWQ 889 (913)
T ss_pred HHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCC-CcHHH
Confidence 9987 77788888888888899999999999999999888865 34443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.9e-15 Score=136.56 Aligned_cols=462 Identities=13% Similarity=0.080 Sum_probs=287.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHH-HHHHHHHcCCChhHHHHHHHHHHhCCCCCC----hhhHHH
Q 006281 85 LSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYR-FIIPSLIQGKNTQKAFSVFNEVKFNCEDIG----PEICNS 159 (652)
Q Consensus 85 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~ 159 (652)
.....+.+-|.....+.+|...++-+.+....|+.-.+. .+-..+.+..++.+|++.|+.....-+..+ +...|.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 344455566777788899999999999988778766543 344667788899999999998776532222 234556
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc----------hhhH
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING----------SVIA 229 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----------~~~~ 229 (652)
+...+.+.|+++.|+.-|+...+. .|+-.+-..|+-++...|+.++..+.|.++....+....+ ....
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 666778999999999999998775 4565544445546677899999999999998763321111 1111
Q ss_pred H-----HHHHHHHccCC--HHHHHHHHHHHhhCCCCcCHHH-------------HH--------HHHHHHHhcCCHHHHH
Q 006281 230 V-----LIIHGFCKGKR--VEEAFKVLDELRIRECKPDFIA-------------YR--------IVAEEFKLMGSVFERE 281 (652)
Q Consensus 230 ~-----~l~~~~~~~g~--~~~A~~~~~~m~~~~~~p~~~~-------------~~--------~ll~~~~~~g~~~~a~ 281 (652)
+ -.+.-+-+.++ -+++.-.-.++..--+.||-.. +. .-..-+.++|+++.|.
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 1 11121211111 1122211112211112222110 00 0112356778888888
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHH--HHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILG--LIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK 359 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~ 359 (652)
+++.-..+..-+.....-+.+... +..-.++..|.+..+..+....-......|.--..+.+|++++|...|++.+..
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n 519 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN 519 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC
Confidence 887777665433333333332222 222345566666555444321110011111111236677888888888887765
Q ss_pred CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006281 360 GRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYN 439 (652)
Q Consensus 360 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 439 (652)
+..-....|+.- -.+-+.|++++|.+.|-++...-. .+..+...+.+.|....+..+|++++-+.... ++.|+....
T Consensus 520 dasc~ealfnig-lt~e~~~~ldeald~f~klh~il~-nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ils 596 (840)
T KOG2003|consen 520 DASCTEALFNIG-LTAEALGNLDEALDCFLKLHAILL-NNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILS 596 (840)
T ss_pred chHHHHHHHHhc-ccHHHhcCHHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHH
Confidence 433333333332 246677888888888877654311 25667777777888888888888888776544 344677788
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-cC
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC-QE 518 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~ 518 (652)
.|...|-+.|+-..|.+.+-+--+- ++-+..+...|...|....-+++++.+|++.. -++|+..-|..++..|. +.
T Consensus 597 kl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaa--liqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 597 KLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAA--LIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHH--hcCccHHHHHHHHHHHHHhc
Confidence 8888888888888888776654443 46677788888888888888888888888765 35788888887776554 67
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
|++++|+.+|+.....-+. +...+..|++.+...|.
T Consensus 674 gnyqka~d~yk~~hrkfpe-dldclkflvri~~dlgl 709 (840)
T KOG2003|consen 674 GNYQKAFDLYKDIHRKFPE-DLDCLKFLVRIAGDLGL 709 (840)
T ss_pred ccHHHHHHHHHHHHHhCcc-chHHHHHHHHHhccccc
Confidence 8888888888876655554 77788888877776663
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.3e-12 Score=118.41 Aligned_cols=480 Identities=12% Similarity=0.019 Sum_probs=312.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+...|-.-.+-=..++++..|..+|++....+ ..+...|...+.+=.++..++.|..+|+..+..-+..|. .|-.-+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdq-lWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQ-LWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHH-HHHHHHH
Confidence 33344444444455667777777777777655 456666666677667777777777777776654322222 3333334
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCH
Q 006281 163 VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV 242 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 242 (652)
+=-..|++..|.++|++-.+. .|+...|.+.|+.-.+.+..+.|..++++..-. . |....|.-....-.++|.+
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~---H-P~v~~wikyarFE~k~g~~ 223 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV---H-PKVSNWIKYARFEEKHGNV 223 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee---c-ccHHHHHHHHHHHHhcCcH
Confidence 444557777777777776553 677777777777777777777777777776643 2 3455565566666677777
Q ss_pred HHHHHHHHHHhhC-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 006281 243 EEAFKVLDELRIR-EC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELG 319 (652)
Q Consensus 243 ~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~ 319 (652)
..|..+|+...+. |- .-+...+.++..--.++..++.|.-+|.-...+-.+-. ...|.....---+-|+.....+..
T Consensus 224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 7777777766543 10 01223344444444456667777777766655421111 111211111111223322221110
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006281 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 399 (652)
- .+-.--++.+++.+ +.|..++-..++.-...|+.+...++|+.....-++..
T Consensus 304 v--------------------------~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ 356 (677)
T KOG1915|consen 304 V--------------------------GKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPAS 356 (677)
T ss_pred h--------------------------hhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchh
Confidence 0 00011233333332 34667777778777888999999999998886532211
Q ss_pred HH------HHHHHHHH---HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCChhhHHHHHHHHHHcCC
Q 006281 400 ME------SYNVMVSF---LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC----CREDLLRPAKKLWDQMFASGC 466 (652)
Q Consensus 400 ~~------~~~~li~~---~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~ 466 (652)
.. .|--+=-+ -....+++.+.++|+..++. ++...+||.-+--.| .++.++..|.+++...+ |.
T Consensus 357 ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~ 433 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GK 433 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--cc
Confidence 11 12111111 23467899999999998884 344556666554444 47789999999998876 45
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCccHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARSILST 545 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~ 545 (652)
.|-..+|...|..-.+.++++.+..++++.++.++. +..+|......=...|+.+.|..+|+-+++.. .......|.+
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwka 512 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKA 512 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHH
Confidence 899999999999999999999999999999988655 78889888888888999999999999887765 3334556888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh-----ccc-----------cHHHHHHHHHHHHh
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA-----DAR-----------EVEMAIEHIKWIQE 601 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 601 (652)
.|+.-...|.+++|..+++++.+......+|.+.+.--. +.| +...|..+++.+..
T Consensus 513 YIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 513 YIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred hhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 999999999999999999999997777778887776554 344 66788888888764
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.1e-14 Score=131.40 Aligned_cols=220 Identities=13% Similarity=0.051 Sum_probs=138.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.-.|+.-.|..-|+..+.....++ ..|.-+...|....+.++....|+...+.+ +-|+.+|..-.+.+.-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHH
Confidence 345666777777777766643322 225556666777777777777777777665 556666666666666677777777
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 006281 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-D 569 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 569 (652)
.-|++.++.... +...|..+.-+..+.+.++++...|+++...-+. .+.+|+....++...+++++|.+.++.... .
T Consensus 415 aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 777777754322 3445555555555677777777777776665554 566777777777777777777777776655 3
Q ss_pred CC------CchhHHHHHHHHh-ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 570 LG------HSDSHVILLKSLA-DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 570 ~~------~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
+. ++..++.-+.... -.+++..|+++++++.+.+|.. ...+..|+....+.|+.++|+++|++..
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc-e~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC-EQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred cccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH-HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 33 2223321111111 2367777777777777777766 3445557777777777777777776543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.72 E-value=4.6e-17 Score=154.09 Aligned_cols=261 Identities=16% Similarity=0.156 Sum_probs=117.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSAND-YFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 448 (652)
.+...+.+.|++++|.++++...... ...+...|..+.......++++.|...++++...+.. ++..+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 34667788999999999996654443 2335666777777778889999999999999887544 55667777776 789
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG-VAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
+++++|.++++...+. .++...+..++..+.+.++++++.++++.+.... ..++...|..+...+.+.|+.++|.+.
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999999887765 4667778888999999999999999999987542 345777888899999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++++++..+. +..+...++..+...|+.+++.++++..... +.++..+..++.++...|++++|+..++++.+.+|.+
T Consensus 169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d 247 (280)
T PF13429_consen 169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDD 247 (280)
T ss_dssp HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccc
Confidence 9999999887 7888999999999999999999999888773 6677788899999999999999999999999999998
Q ss_pred cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 607 LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+....+ +++++...|+.++|.++.+++.+
T Consensus 248 ~~~~~~-~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLA-YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHH-HHHHHT-----------------
T ss_pred cccccc-ccccccccccccccccccccccc
Confidence 766665 99999999999999999987764
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.5e-11 Score=112.76 Aligned_cols=444 Identities=10% Similarity=0.048 Sum_probs=267.4
Q ss_pred cCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHH
Q 006281 117 LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 117 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 196 (652)
.+...|-....-=..++++..|..+|+....-. ..+...|-.-+.+=.++..+..|..+|++....-...|..-| -.+
T Consensus 71 ~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWy-KY~ 148 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWY-KYI 148 (677)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHH-HHH
Confidence 334444433333334555666666666665443 224455555555556666666666666665543222222222 122
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 276 (652)
.+--..|++..|.++|++-..- .|+..+|++.|+.-.+.+.++.|..+++...- +.|++.+|--..+.--+.|.
T Consensus 149 ymEE~LgNi~gaRqiferW~~w----~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWMEW----EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHcC----CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCc
Confidence 2223345566666666555543 23355555555555555666666666655544 24555555555555555555
Q ss_pred HHHHHHHHHHHHhc-CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHH
Q 006281 277 VFEREVVLKKKRKL-GV-APRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFN 354 (652)
Q Consensus 277 ~~~a~~~~~~~~~~-~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~ 354 (652)
...+..+|+...+. |- ..+...|++...--.++..++.|.-+|+..++.-+.. .+
T Consensus 223 ~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~------------------ra----- 279 (677)
T KOG1915|consen 223 VALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG------------------RA----- 279 (677)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------------------cH-----
Confidence 55555555544332 10 0011111111111122333344444443333321110 11
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHH--------HHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 355 FMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEV--------YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 355 ~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~--------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
...|..+...--+-|+.....+. ++.+...++. |-.+|--.++.-...|+.+...++|++.
T Consensus 280 ----------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErA 348 (677)
T KOG1915|consen 280 ----------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERA 348 (677)
T ss_pred ----------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 22233333332333443333222 3344444433 7778888888888899999999999999
Q ss_pred HHcCCCCCHH--HHHHHH--------HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----HhcCCHHHHHHH
Q 006281 427 KRKGLDPDVS--FYNSLM--------EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF----SEVGEIEGALRL 492 (652)
Q Consensus 427 ~~~~~~p~~~--~~~~ll--------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~A~~~ 492 (652)
+.. ++|-.. .|...| -.-....+.+.+.++++..++. ++-...||.-+--.| .++.+...|.++
T Consensus 349 Ian-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARki 426 (677)
T KOG1915|consen 349 IAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKI 426 (677)
T ss_pred Hcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHH
Confidence 875 344211 121111 1113568899999999999884 455556666555554 467899999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (652)
+...+ |..|...+|...|..=.+.++++.+..++++.++.++. +-.+|...+..-...|+.+.|..+|+-+.+.|..
T Consensus 427 LG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~l 503 (677)
T KOG1915|consen 427 LGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPAL 503 (677)
T ss_pred HHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCccc
Confidence 99988 77899999999999999999999999999999999987 8888988888888999999999999998886542
Q ss_pred c-h--hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 573 S-D--SHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 573 ~-~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
. + .|-+.+.--...|.+++|..+|+.+++..+...
T Consensus 504 dmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 504 DMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred ccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccch
Confidence 1 1 233555555789999999999999999877654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.1e-13 Score=135.07 Aligned_cols=289 Identities=11% Similarity=0.019 Sum_probs=202.9
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (652)
..+..|+++.|.+.+....+..-.| ...+........+.|+++.|.+.+.++.+....+...........+...|++++
T Consensus 93 ~a~~eGd~~~A~k~l~~~~~~~~~p-~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~ 171 (398)
T PRK10747 93 LKLAEGDYQQVEKLMTRNADHAEQP-VVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHA 171 (398)
T ss_pred HHHhCCCHHHHHHHHHHHHhcccch-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHH
Confidence 3445677777776666544432111 222333344457888899999999888775433222222233567788899999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHH
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-------KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~ 491 (652)
|...++++.+.... +...+..+...|.+.|++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 172 Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 172 ARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 99999988887544 6677888888888999999999999998887533222 133333444444455566666
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
+++.+.+. .+.+......+...+...|+.++|.+++++..+... ++... ++.+....++.+++.+.+++..+ .|
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~--~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P 325 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQY--DERLV--LLIPRLKTNNPEQLEKVLRQQIKQHG 325 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CHHHH--HHHhhccCCChHHHHHHHHHHHhhCC
Confidence 77766443 234777888888999999999999999998887433 44322 23333455889999999988876 66
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.++.....++..+.+.|++++|.+.++++.+..|+... +..+..++.+.|+.++|.+++++-..
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~~--~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAYD--YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 67777889999999999999999999999999888643 33488889999999999999886544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.1e-13 Score=133.59 Aligned_cols=511 Identities=13% Similarity=0.088 Sum_probs=300.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChh
Q 006281 76 QQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPE 155 (652)
Q Consensus 76 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 155 (652)
+..|..|+..||..+|.-|+..|+.+.|- +|.-|.-...+.+...++.++.+....++.+.+. .|.+.
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD 84 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD 84 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence 56688899999999999999999999998 9998888888888899999999988888877665 67888
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHH-HHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHH
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDE-MSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIH 234 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~ 234 (652)
+|..|..+|...||+.. .+..++ |. .+...+...|-......++..+.-..+..|+ .. ..+.
T Consensus 85 tyt~Ll~ayr~hGDli~-fe~veqdLe------------~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpd-a~---n~il 147 (1088)
T KOG4318|consen 85 TYTNLLKAYRIHGDLIL-FEVVEQDLE------------SINQSFSDHGVGSPERWFLMKIHCCPHSLPD-AE---NAIL 147 (1088)
T ss_pred HHHHHHHHHHhccchHH-HHHHHHHHH------------HHHhhhhhhccCcHHHHHHhhcccCcccchh-HH---HHHH
Confidence 99999999999998766 222222 22 1233444445444445555444433122222 11 2333
Q ss_pred HHHccCCHHHHHHHHHHHhhCCC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 235 GFCKGKRVEEAFKVLDELRIREC-KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 235 ~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
...-.|-++.+++++..++.... .|-.. +++-+..... -..++........-.|+..+|..++++....|+.+
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~v----fLrqnv~~nt--pvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d 221 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQV----FLRQNVVDNT--PVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVD 221 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHH----HHHHhccCCc--hHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchh
Confidence 44556777888888777654321 11111 2443333222 23333333322211688999999999999999999
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSA 393 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 393 (652)
.|..++..|.+.|.+.+...|-.++.. .++...+..++..|.+.|+.|+..|+...+..+.++|....+.
T Consensus 222 ~Ak~ll~emke~gfpir~HyFwpLl~g--~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~-------- 291 (1088)
T KOG4318|consen 222 GAKNLLYEMKEKGFPIRAHYFWPLLLG--INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE-------- 291 (1088)
T ss_pred hHHHHHHHHHHcCCCcccccchhhhhc--CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------
Confidence 999999999999999998866555544 6778888889999999999999999999888877755522221
Q ss_pred CCCCcCHHHHHHHHHHHHhcC-----CHH-----HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 394 NDYFTDMESYNVMVSFLCTSG-----RLR-----EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 394 ~~~~~~~~~~~~li~~~~~~g-----~~~-----~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
.+.. ....+++-+..-+-.| +.+ -....+.+..-.|+.....+|...... ...|.-++..++...+..
T Consensus 292 e~sq-~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~n 369 (1088)
T KOG4318|consen 292 EGSQ-LAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLN 369 (1088)
T ss_pred cccc-hhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcC
Confidence 1221 2222222222222222 111 112222222223444344445433332 336777777777766653
Q ss_pred cC--C-CCCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHHCCCCCCHh------------
Q 006281 464 SG--C-SGNLKTYNILISKFSEVGE----------------------IEGALRLFHNMLEKGVAPDAT------------ 506 (652)
Q Consensus 464 ~~--~-~~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~m~~~~~~p~~~------------ 506 (652)
-- . ..++..|..++.-|.+.-+ ..+..++.... .||..
T Consensus 370 pt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~l-----rkns~lr~lv~Lss~El 444 (1088)
T KOG4318|consen 370 PTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENL-----RKNSFLRQLVGLSSTEL 444 (1088)
T ss_pred CccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHh-----CcchHHHHHhhhhHHHH
Confidence 21 1 1234445554444433211 11111111111 22211
Q ss_pred ----------------hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-
Q 006281 507 ----------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD- 569 (652)
Q Consensus 507 ----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 569 (652)
.-+.++..|++.-+..++...-++ .+...- +..|..+++.+..+.+.+.|..+.++....
T Consensus 445 er~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ek-ye~~lf--~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 445 ERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEK-YEDLLF--AGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred hcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHh--hhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 112233334444344444333222 222211 146777777777777777777777776441
Q ss_pred ---CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 570 ---LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 570 ---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
.-+..-+..+.+.+.+.+....+..+++++.+.-.+.+ ......+.......|+.+...+..+-+...|+..
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 11223445677777777777778777777776433222 2233335566667777777777777666666654
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.8e-13 Score=117.46 Aligned_cols=308 Identities=14% Similarity=0.106 Sum_probs=244.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC---HHHHHHHHHH
Q 006281 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD---MESYNVMVSF 409 (652)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~ 409 (652)
.|-.-++.+.....++|.++|-+|.+.+. -+..+.-++.+.|.+.|..|.|+++.+.+.+..-.+. ....-.|..-
T Consensus 38 ~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~D 116 (389)
T COG2956 38 DYVKGLNFLLSNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRD 116 (389)
T ss_pred HHHhHHHHHhhcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHH
Confidence 45556667777888999999999988532 2455566788889999999999999999988622111 1244567788
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCC
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN----LKTYNILISKFSEVGE 485 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 485 (652)
|...|-+|.|..+|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+-.+. ...|.-|...+....+
T Consensus 117 ym~aGl~DRAE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 117 YMAAGLLDRAEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHhhhhhHHHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999876532 456778899999999999999999999988753333 2356667777777889
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
.+.|..++.+..+.+.+ ++..-..+.+.....|+++.|++.++.+.+.++..-+.+...|..+|.+.|+.++....+.+
T Consensus 196 ~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~ 274 (389)
T COG2956 196 VDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRR 274 (389)
T ss_pred HHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 99999999999987544 44444557778889999999999999999999888888999999999999999999999999
Q ss_pred hhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh---cCCCCchHHHHHHHHHHcccccC
Q 006281 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS---SSSYPEPILLLLHALQEKCLDSE 642 (652)
Q Consensus 566 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~a~~~~~~~~~~g~~~~ 642 (652)
+.+....+.....+........-.+.|...+.+-....|+. ..+..|++.-. ..|.+.+-+..++.|....++..
T Consensus 275 ~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~--~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~ 352 (389)
T COG2956 275 AMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM--RGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRK 352 (389)
T ss_pred HHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH--HHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhc
Confidence 98877777777777777766666788888888888888876 33344666543 45668888899999998888887
Q ss_pred CCC
Q 006281 643 IGA 645 (652)
Q Consensus 643 ~~~ 645 (652)
|.+
T Consensus 353 ~~Y 355 (389)
T COG2956 353 PRY 355 (389)
T ss_pred CCc
Confidence 754
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-13 Score=133.49 Aligned_cols=255 Identities=13% Similarity=0.055 Sum_probs=198.2
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|+++.|...+.++.+....+...........+...|+++.|...++.+.+..+. +......+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHH
Confidence 555677777777777765432222222223356788899999999999999988765 7788889999999999999999
Q ss_pred HHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 421 GVIQEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+++..+.+.+..++. .+|..++.......+.+...++|+.+.+. .+.++.....+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999988755322 12333344444455566677777766543 2567888899999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
++..+. .|+.... ++.+....++.+++.+..++..+..+. |+..+..+...+.+.|++++|.+.|+.+.+..++.
T Consensus 287 ~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 287 LDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 999874 4455322 334444669999999999999988886 88889999999999999999999999999876777
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..+..++.++.+.|+.++|.+++++....
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78889999999999999999999988664
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-13 Score=132.10 Aligned_cols=293 Identities=10% Similarity=-0.031 Sum_probs=205.8
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
-.+..|+++.|.+.+....+.. |+ ...+-....+....|+.+.|.+.+....+....+.....-.....+...|+++
T Consensus 93 la~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~ 170 (409)
T TIGR00540 93 LKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELH 170 (409)
T ss_pred HHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHH
Confidence 3455677777777777665543 33 23333445667788999999999998876543333334444577788899999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN-ILIS---KFSEVGEIEGALRLF 493 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~A~~~~ 493 (652)
.|...++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+
T Consensus 171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L 248 (409)
T TIGR00540 171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL 248 (409)
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 999999999888543 6677888888999999999999999999988633 333332 1111 223333334444455
Q ss_pred HHHHHCCC---CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH-HHHHHhcCCHHHHHHHHHHhhh-
Q 006281 494 HNMLEKGV---APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF-MISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 494 ~~m~~~~~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..+.+... +.+...+..+...+...|+.++|.+.+++.++..+......+..+ .......++.+++.+.+++..+
T Consensus 249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 55554322 137788888889999999999999999999887765332211111 1222345778889999988776
Q ss_pred CCCCc--hhHHHHHHHHhccccHHHHHHHHH--HHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 569 DLGHS--DSHVILLKSLADAREVEMAIEHIK--WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 569 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.|.++ ....++++.+.+.|++++|.++++ ...+..|++. .+..++..+.+.|+.++|.+++++....
T Consensus 329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~--~~~~La~ll~~~g~~~~A~~~~~~~l~~ 399 (409)
T TIGR00540 329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN--DLAMAADAFDQAGDKAEAAAMRQDSLGL 399 (409)
T ss_pred CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 66666 666799999999999999999999 5666777653 3446999999999999999999976544
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.65 E-value=9.5e-13 Score=131.21 Aligned_cols=256 Identities=12% Similarity=0.027 Sum_probs=185.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
...|+.+.|...+.+..+....+....-......+...|+++.|...++.+.+..+. +..++..+...+...|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~ 207 (409)
T TIGR00540 129 QQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALD 207 (409)
T ss_pred HHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHH
Confidence 344566666666666554432222223333466788899999999999999988755 7778889999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHH-HHHHHH---HhcCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 421 GVIQEMKRKGLDPDVSFYN-SLMEAC---CREDLLRPAKKLWDQMFASG---CSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~-~ll~~~---~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+++..+.+.+.. +...+. .-..++ ...+..+.+.+.+..+.+.. .+.+...+..+...+...|+.++|.+++
T Consensus 208 ~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l 286 (409)
T TIGR00540 208 DIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEII 286 (409)
T ss_pred HHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 999999988754 333231 111111 23333333444555555442 1247888999999999999999999999
Q ss_pred HHHHHCCCCCCHhh--H-HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHH--h
Q 006281 494 HNMLEKGVAPDATT--Y-TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCRRGHFLVATKLLRG--L 566 (652)
Q Consensus 494 ~~m~~~~~~p~~~~--~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~ 566 (652)
++..+.. ||... + ....-.....++.+.+.+.+++..+..+. ++ ....++...+.+.|++++|.+.|+. .
T Consensus 287 ~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a 363 (409)
T TIGR00540 287 FDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAA 363 (409)
T ss_pred HHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHH
Confidence 9999763 34331 1 11222234468889999999998887766 66 7888999999999999999999994 5
Q ss_pred hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 567 SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.+..+++..+..++..+.+.|+.++|.+++++...
T Consensus 364 ~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 364 CKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55556666778999999999999999999998654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-13 Score=134.06 Aligned_cols=285 Identities=15% Similarity=0.084 Sum_probs=232.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC--CcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY--FTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
+..+|+..|..+.+ .+.-+......+..+|...+++++|.++|+.+.+..+ .-+...|.+.+..+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~-h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPS-HHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHH-hcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 67889999998444 3444557788888999999999999999999987632 12667888887655332 22333
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006281 423 I-QEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (652)
Q Consensus 423 ~-~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 501 (652)
+ +++.+.. +-.+.+|.++.++|.-+++.+.|++.|++.+..+ +-...+|+.+..-+.....+|.|...|+..+..
T Consensus 409 Laq~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~-- 484 (638)
T KOG1126|consen 409 LAQDLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGV-- 484 (638)
T ss_pred HHHHHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--
Confidence 3 3333332 3367899999999999999999999999999864 447889999999999999999999999998843
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 502 AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 502 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
.| +-..|-.+...|.+.++++.|.-.|+++++.++. +..+...+...+.+.|+.|+|+++++++.. +|.++-.-...
T Consensus 485 ~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 485 DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 2335556777899999999999999999999987 778888899999999999999999999876 88888888889
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 640 (652)
+..+...+++++|+..++++.+.-|+. ..++..++..|.+.|+.+.|+.-+--+.+...+
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~e-s~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQE-SSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcch-HHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 999999999999999999999999988 455666999999999999999888877765443
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-11 Score=113.19 Aligned_cols=323 Identities=13% Similarity=0.058 Sum_probs=175.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH--HHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR--EFI 303 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~--~ll 303 (652)
...+....-.+.+.|....|...|...... .+-.-..|..|... ..+.+.+..+. .|...|...+. .+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~-~P~~W~AWleL~~l---it~~e~~~~l~-----~~l~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNR-YPWFWSAWLELSEL---ITDIEILSILV-----VGLPSDMHWMKKFFLK 234 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhc-CCcchHHHHHHHHh---hchHHHHHHHH-----hcCcccchHHHHHHHH
Confidence 444444455566777778888877776653 11233333333222 22222222111 12222222221 122
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH-HHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCC
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG-SVSSIDPRSAIVFFNFMIEKGR--VPTLSTLSNLSKNLCKRNK 380 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~ 380 (652)
.++-.....+++.+-.+.....|++.....-+.... .+.+.|+++|+.+|+++.+... .-|..+|+.++ |.+..+
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhhh
Confidence 344445566666666666666666655544333322 2445567777777777666531 12455565554 333322
Q ss_pred hHH---HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 381 SDE---LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 381 ~~~---a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
-.. |..++ .+.+ . -+.|+..+.+-|.-.++.++|...|+...+.+.+ ....|+.+..-|...++...|.+-
T Consensus 313 skLs~LA~~v~-~idK--y--R~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVS-NIDK--Y--RPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHH-Hhcc--C--CccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHH
Confidence 211 11111 1111 1 2335556666666666666677777666665433 345566666666666666666666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
++..++.+ +.|-..|-.|.++|.-.+.+.-|+-.|++....... |...|.+|.++|.+.++.++|++.|+.++..+-.
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt 464 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT 464 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc
Confidence 66666654 556666666666666666666666666666654222 5666666666666666666666666666655543
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+...+..|++.|.+.++.++|.+.+++-.+
T Consensus 465 -e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 -EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred -chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 455666666666666666666666665443
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-12 Score=120.41 Aligned_cols=222 Identities=12% Similarity=0.084 Sum_probs=144.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
.-.|+.-.|..-|+..+.....+ ...|--+..+|....+.++....|.+..+.+.. ++.+|..-.....-.+++++|.
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~ 414 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAI 414 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHH
Confidence 34566677777777776665442 223555666677777777777777777766533 4555655555666667777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
.=|++.+... +-++..|-.+..+..+.++++++...|++.+.. ++-.+..|+.....+...++++.|.+.|+.++...
T Consensus 415 aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 415 ADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 7777777654 445566666666666777777777777777764 44456677777777777777777777777776543
Q ss_pred CC-------ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 536 VM-------LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 536 ~~-------~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+. +.+.+-..++..- =.+++..|+++++++.+ +|....++..++..-.+.|+.++|++++++....
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 32 1122222222221 23777777777777766 6666677777777777778888888877776554
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.1e-15 Score=142.71 Aligned_cols=254 Identities=16% Similarity=0.158 Sum_probs=108.7
Q ss_pred hcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 342 SSIDPRSAIVFFNFMIEKGRVP-TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
..|++++|+++++.......+| +...+..+...+...++++.|...++++...+.. +...+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 3455555555554433333222 3344444555666788889999999888876544 55567777776 6888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 499 (652)
+++.+..+. .+++..+..++..+.+.++++++.++++.+... ..+.+...|..+...+.+.|++++|++.+++.++.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 988877655 346667778888888999999999999987754 23567778888889999999999999999999876
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHH
Q 006281 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVI 578 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 578 (652)
.+. |......++..+...|+.+++.++++...... ..++..+..+..++...|+.++|..++++... .|.++.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~ 253 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLA 253 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccccccccccccc
Confidence 332 57778888888999999999888888766654 23666788899999999999999999999877 7778888889
Q ss_pred HHHHHhccccHHHHHHHHHHHHh
Q 006281 579 LLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
++.++...|+.++|.++.+++..
T Consensus 254 ~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 254 YADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHT-----------------
T ss_pred ccccccccccccccccccccccc
Confidence 99999999999999998887654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.1e-13 Score=134.10 Aligned_cols=291 Identities=13% Similarity=0.059 Sum_probs=214.8
Q ss_pred CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHH
Q 006281 276 SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNF 355 (652)
Q Consensus 276 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~ 355 (652)
+..+|...|..+..+ +.-+......+.++|...+++++|..+|+.+.+..+-
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~--------------------------- 385 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPY--------------------------- 385 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---------------------------
Confidence 345666666664333 2222244455666777777777777777766654221
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006281 356 MIEKGRVPTLSTLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD 434 (652)
Q Consensus 356 m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~ 434 (652)
..-+...|.+.+=.+-+ +-+.. +-+.+.+... -.+.+|.++.++|.-+++.+.|++.|++..+.... .
T Consensus 386 -----rv~~meiyST~LWHLq~----~v~Ls~Laq~Li~~~~-~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-f 454 (638)
T KOG1126|consen 386 -----RVKGMEIYSTTLWHLQD----EVALSYLAQDLIDTDP-NSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-F 454 (638)
T ss_pred -----cccchhHHHHHHHHHHh----hHHHHHHHHHHHhhCC-CCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-c
Confidence 11122333333211110 01111 1122333322 26789999999999999999999999999876322 6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
..+|+.+..-+.....+|.|...|+..+... +.+-.+|..|...|.++++++.|+-.|+...+.+.. +.+....+...
T Consensus 455 aYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~ 532 (638)
T KOG1126|consen 455 AYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRI 532 (638)
T ss_pred chhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHH
Confidence 7888888888888999999999999988543 333445556778899999999999999999976544 66777778888
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+.+.|+.++|+++++++...++. ++..-...+..+...+++++|++.++++.+ -|.....+..++.+|.+.|+.+.|+
T Consensus 533 ~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 533 QHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999887 666666678888999999999999999988 6777888999999999999999999
Q ss_pred HHHHHHHhcCCCCcH
Q 006281 594 EHIKWIQESSPTMLQ 608 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~ 608 (652)
..+.-+...+|....
T Consensus 612 ~~f~~A~~ldpkg~~ 626 (638)
T KOG1126|consen 612 LHFSWALDLDPKGAQ 626 (638)
T ss_pred HhhHHHhcCCCccch
Confidence 999999999987644
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.6e-11 Score=110.85 Aligned_cols=312 Identities=11% Similarity=0.038 Sum_probs=222.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCC--CCHHHHHHHHHHHhcCC
Q 006281 268 AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFT--IDDDVLNALIGSVSSID 345 (652)
Q Consensus 268 l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 345 (652)
..++-...+.+++..-.+.+...|...+...-+....+.....++++|+.+|+.+.+..+- .|..+|+-++-.- .+
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~--~~ 311 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVK--ND 311 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHH--hh
Confidence 3445555566666666666666665554444444444555667777777777777766321 1233343333211 11
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
...+.++.+-...=-+--+.|...+.+-|.-.++.++|+..|+...+.+.. ....|+.+..-|...++...|++-++.
T Consensus 312 -~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRr 389 (559)
T KOG1155|consen 312 -KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRR 389 (559)
T ss_pred -hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHH
Confidence 111222222111111223456777777888889999999999999998765 677899999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
..+.... |-..|-.|..+|.-.+.+.-|+-.|++..+.. +.|...|.+|..+|.+.++.++|+..|.+....|-. +.
T Consensus 390 Avdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~ 466 (559)
T KOG1155|consen 390 AVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EG 466 (559)
T ss_pred HHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-ch
Confidence 9987544 88899999999999999999999999999874 678899999999999999999999999999987644 66
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CC-Cc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNH----DV-ML-ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVIL 579 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l 579 (652)
..+..|.+.|-+.++.++|.+.|++.++. |. .+ .......|..-+.+.+++++|..+......-
T Consensus 467 ~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~---------- 536 (559)
T KOG1155|consen 467 SALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG---------- 536 (559)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC----------
Confidence 88999999999999999999999987662 22 22 2223334666678889999988766555442
Q ss_pred HHHHhccccHHHHHHHHHHHHhc
Q 006281 580 LKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.-..++|..+++++...
T Consensus 537 ------~~e~eeak~LlReir~~ 553 (559)
T KOG1155|consen 537 ------ETECEEAKALLREIRKI 553 (559)
T ss_pred ------CchHHHHHHHHHHHHHh
Confidence 12346677777776654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.8e-11 Score=110.56 Aligned_cols=291 Identities=13% Similarity=0.029 Sum_probs=230.8
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
+..+..|++..|.++..+-.+.+-.| ...|..-..+--..|+.+.+-.++.+..+....++...+-+........|+++
T Consensus 92 l~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~ 170 (400)
T COG3071 92 LLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYP 170 (400)
T ss_pred HHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCch
Confidence 33456788888888888866666544 33455556677788999999999999988755667777788888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-------KTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~ 490 (652)
.|..-..++.+.+.. ++........+|.+.|++.....++..+.+.|.-.+. .+|+.+++-....+..+.-.
T Consensus 171 aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~ 249 (400)
T COG3071 171 AARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLK 249 (400)
T ss_pred hHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHH
Confidence 999999999988755 6778888999999999999999999999998755443 46777777777776666666
Q ss_pred HHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-C
Q 006281 491 RLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-D 569 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~ 569 (652)
..|+...+. .+-++..-.+++.-+.+.|+.++|.++.++.++++..+. .. ......+-++.+.-++..++... .
T Consensus 250 ~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---L~-~~~~~l~~~d~~~l~k~~e~~l~~h 324 (400)
T COG3071 250 TWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR---LC-RLIPRLRPGDPEPLIKAAEKWLKQH 324 (400)
T ss_pred HHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh---HH-HHHhhcCCCCchHHHHHHHHHHHhC
Confidence 777776654 444677778888899999999999999999999887765 22 22234567778877777777655 5
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|.++..+.+|+..|.+.+.|.+|.+.++.+.+..|+. ..++.++++|.+.|+.++|.+..++....
T Consensus 325 ~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~--~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 325 PEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSA--SDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCCh--hhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6677788899999999999999999999999988876 44555999999999999999999887744
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.56 E-value=5.5e-10 Score=100.10 Aligned_cols=184 Identities=13% Similarity=0.101 Sum_probs=118.1
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (652)
+.-+...+++..|+.+++.-...+-+-...+-.=+..++.+.|++++|...+..+... -.++...+-.|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 5667788899999999887765543222233333456677889999999999888764 355667777777777777888
Q ss_pred hhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHH
Q 006281 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD 250 (652)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 250 (652)
.+|..+-....+ ++..-..++....+.++-++...+.+.+... ..-..+|.......-.+.+|.+++.
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-------~EdqLSLAsvhYmR~HYQeAIdvYk 175 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-------LEDQLSLASVHYMRMHYQEAIDVYK 175 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 888877655432 2233334444455667777776666666543 1222335555555567788888888
Q ss_pred HHhhCCCCcCHHHHHH-HHHHHHhcCCHHHHHHHHHHHHh
Q 006281 251 ELRIRECKPDFIAYRI-VAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 251 ~m~~~~~~p~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
.+... .|+-...|. +.-+|.+..-++-+.++++-...
T Consensus 176 rvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~ 213 (557)
T KOG3785|consen 176 RVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR 213 (557)
T ss_pred HHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence 88765 344444444 33466677777777777766554
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-12 Score=113.80 Aligned_cols=248 Identities=15% Similarity=0.173 Sum_probs=146.0
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCC
Q 006281 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV------SFYNSLMEACCREDL 450 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~------~~~~~ll~~~~~~g~ 450 (652)
-.++.++|.+.|-+|.+.... +..+--+|.+.|-+.|..|.|+.+.+.+.++ ||. ...-.|..-|...|-
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl 122 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGL 122 (389)
T ss_pred hhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhh
Confidence 346667777777777765332 3444556667777777777777777776654 331 122334445666677
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh----hHHHHHHHHHcCCCHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT----TYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~l~~~~~~~g~~~~a~~ 526 (652)
+|.|+++|..+.+.+ .--....-.|+..|-...+|++|+++-+++...+-.+... -|.-|...+....+.+.|..
T Consensus 123 ~DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 123 LDRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hhHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 777777777776543 3334556666777777777777777777666654443322 24445555555666777777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+++++.+.++. ....--.+.+.....|++..|.+.++.+.+. |. .+.+...|..+|.+.|+.++.+..+.++.+..+
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~ 280 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT 280 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 77777666655 4444445666666777777777777766652 22 123344666677777777777777777776666
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+...... +...-....-.+.|..++.
T Consensus 281 g~~~~l~--l~~lie~~~G~~~Aq~~l~ 306 (389)
T COG2956 281 GADAELM--LADLIELQEGIDAAQAYLT 306 (389)
T ss_pred CccHHHH--HHHHHHHhhChHHHHHHHH
Confidence 5533322 3333333333444444444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.7e-11 Score=108.10 Aligned_cols=251 Identities=13% Similarity=0.074 Sum_probs=194.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVI 423 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 423 (652)
||.+.+-.++.+..+..-.++....-.........|+.+.|..-++.+.+.+.. ...+.....++|.+.|++.....++
T Consensus 132 gd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l 210 (400)
T COG3071 132 GDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAIL 210 (400)
T ss_pred ccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHH
Confidence 444555555555544433445555566667778889999999888888887765 6778888899999999999999999
Q ss_pred HHHHHcCCCCCH-------HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 424 QEMKRKGLDPDV-------SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 424 ~~~~~~~~~p~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
.++.+.|.-.++ .+|+.++.-+...+..+.-...|+..... .+.++..-..++.-+.++|+.++|.++.++.
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~ 289 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDA 289 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 999998865443 35677777666666666666677766554 2556677778888899999999999999999
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhH
Q 006281 497 LEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSH 576 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 576 (652)
.+.+..|. . ...-.+.+.++...-.+..++-.+..+. ++..+.+|...|.+.+.+.+|...|+......++...+
T Consensus 290 Lk~~~D~~---L-~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~ 364 (400)
T COG3071 290 LKRQWDPR---L-CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DPLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDY 364 (400)
T ss_pred HHhccChh---H-HHHHhhcCCCCchHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhH
Confidence 88877666 2 2223566788888888888887776665 67889999999999999999999999888877788899
Q ss_pred HHHHHHHhccccHHHHHHHHHHHHh
Q 006281 577 VILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 577 ~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..++.++.+.|+..+|.+..++...
T Consensus 365 ~~la~~~~~~g~~~~A~~~r~e~L~ 389 (400)
T COG3071 365 AELADALDQLGEPEEAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHH
Confidence 9999999999999999999888763
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-10 Score=110.10 Aligned_cols=260 Identities=13% Similarity=0.049 Sum_probs=130.6
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+..+++.+..++.+...+... +....+..-|.++...|+..+-..+=.++.+.-+. ...+|-++.--|...|+.++|.
T Consensus 255 y~~c~f~~c~kit~~lle~dp-fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YYl~i~k~seAR 332 (611)
T KOG1173|consen 255 YYGCRFKECLKITEELLEKDP-FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYYLMIGKYSEAR 332 (611)
T ss_pred HHcChHHHHHHHhHHHHhhCC-CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHHHHhcCcHHHH
Confidence 334556666666655554432 22223333333555555555555554555444322 4445555555555556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
+.|.+....... =...|..+...|+-.|..++|...+...-+.= +-..--+--+.--|.+.++.+-|.+.|.+...
T Consensus 333 ry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a-- 408 (611)
T KOG1173|consen 333 RYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA-- 408 (611)
T ss_pred HHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--
Confidence 666555433211 12345555555666666666665555554430 00111111223345555566666666665553
Q ss_pred CCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----C--CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 501 VAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----D--VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 501 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
+.| |+...+-+.-.....+.+.+|..+|+..+.. + ......+++.|+.+|.+.+.+++|+..+++... .|.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 222 3444444444444455566666666554421 0 001333455566666666666666666665544 4555
Q ss_pred chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 573 SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.++.+++-+|...|+.+.|++.+.+++...|++
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n 522 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN 522 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence 5556666666666666666666666666666555
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.3e-09 Score=106.25 Aligned_cols=404 Identities=12% Similarity=0.026 Sum_probs=209.6
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
++..+|..+.-+....|+++.+-+.|++....- --....|+.+...+...|.-..|..+++........|+..+...++
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 344555555555556666666666666554321 1244455666666666666556666665544433333333322222
Q ss_pred H-HHH-ccCCHHHHHHHHHHHHcCC--CC--CCHHHHHHHHHHHh-----c-------CChhHHHHHHHHHHHcC-CCCC
Q 006281 304 L-GLI-VERRICEAKELGEVIVSGK--FT--IDDDVLNALIGSVS-----S-------IDPRSAIVFFNFMIEKG-RVPT 364 (652)
Q Consensus 304 ~-~~~-~~~~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~~-----~-------~~~~~a~~~~~~m~~~~-~~~~ 364 (652)
. .|. +.+.++++.++..+++... .. ..+..+..+--.|. . ....++++.+++..+.+ ..|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 2 222 2355555555544444411 00 01111111110010 0 02345566666665544 2333
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~ 443 (652)
...|-.+ -|+..++++.|.+...+..+.+..-+...|..+.-.+...+++.+|+.+.+..... |. |......-+.
T Consensus 480 ~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~ 555 (799)
T KOG4162|consen 480 VIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIH 555 (799)
T ss_pred HHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhh
Confidence 3333333 35566667777777777666644446667777766666777777777766654433 11 0000000000
Q ss_pred HHHhcCChhhHHHHH-------H-------------------HHHHc--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 444 ACCREDLLRPAKKLW-------D-------------------QMFAS--GCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~-------~-------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
.-...++.+++.... + .+.-. .....+.++..+..-....+....-...
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--- 632 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--- 632 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc---
Confidence 001112222222111 1 11100 0111233444333333221111110001
Q ss_pred HHHCCCCC--C------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 496 MLEKGVAP--D------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 496 m~~~~~~p--~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+...-+.| + ...|......+.+.+..++|...+.++....+. ....|......+...|.+++|.+.|....
T Consensus 633 Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~~Al 711 (799)
T KOG4162|consen 633 LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFLVAL 711 (799)
T ss_pred cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHHHHH
Confidence 22222222 2 224555666777778888887777776665543 56667777777788888888888887776
Q ss_pred h-CCCCchhHHHHHHHHhccccHHHHHH--HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 568 S-DLGHSDSHVILLKSLADAREVEMAIE--HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 568 ~-~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
. +|..+++..+++.++.+.|+..-|.. ++..+.+.+|.+. ..|..++..+.+.|+.+.|.+-|+...+.
T Consensus 712 ~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~-eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL 783 (799)
T KOG4162|consen 712 ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH-EAWYYLGEVFKKLGDSKQAAECFQAALQL 783 (799)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence 6 77788888888888888887766666 8888888888774 44555888888888888888888766554
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-12 Score=113.57 Aligned_cols=229 Identities=13% Similarity=0.026 Sum_probs=189.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 403 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
-+.+.++|.+.|.+.+|...|+.-.+. .|.+.||..|-++|.+..++..|+.++.+-.+. ++-++.....+...+-.
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence 366889999999999999999988876 567778888899999999999999999988876 35566556667778888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
.++.++|.++|+...+... .++....++...|.-.++++.|+.+|+++++.|.. ++..|..+.-+|.-.+++|-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~~-~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLHP-INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcCC-ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999887643 26777777888888899999999999999999987 888999999999999999999888
Q ss_pred HHHhhh----CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 563 LRGLSS----DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 563 ~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+++.. .....+.|..++......|++..|.+.++-++..++++. ..++.|+-.-.+.|+++.|..+++.....
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~-ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG-EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH-HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 887765 223456788888888999999999999999999988884 44555888888999999999999877664
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1e-09 Score=104.79 Aligned_cols=491 Identities=14% Similarity=0.046 Sum_probs=260.0
Q ss_pred CCHHHHHHhhhhhhcc-ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLLT-HHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~~-~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
++.+...++++..... ..+.|.- |+.+-.+..-++..--.+.+++.-.|+++.|-.++..-.-. ..|..+....
T Consensus 14 ~s~~~~~~~~r~~l~q~~y~~a~f---~adkV~~l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~ 88 (611)
T KOG1173|consen 14 LSLEKYRRLVRDALMQHRYKTALF---WADKVAGLTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLA 88 (611)
T ss_pred ccHHHHHHHHHHHHHHHhhhHHHH---HHHHHHhccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHH
Confidence 4444455555433222 2333332 33344455566766778888888888888888777654332 3567777777
Q ss_pred HHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH
Q 006281 126 IPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL 205 (652)
Q Consensus 126 i~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 205 (652)
..++.+..+++.|..++..... .-++..|-.-=. ...-..+.+. ++.. +......+-.--..|....+.
T Consensus 89 ~~~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~~--~~~l~~n~~~----~~~~--~~~essic~lRgk~y~al~n~ 157 (611)
T KOG1173|consen 89 AKCLVKLKEWDQALLVLGRGHV---ETNPFSYYEKDA--ANTLELNSAG----EDLM--INLESSICYLRGKVYVALDNR 157 (611)
T ss_pred HHHHHHHHHHHHHHHHhcccch---hhcchhhcchhh--hceeccCccc----cccc--ccchhceeeeeeehhhhhccH
Confidence 7888888888888888873310 001111110000 0000111111 0000 000111111111223344555
Q ss_pred HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCC----CcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 206 GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIREC----KPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 206 ~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~----~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
++|...+.+.... .+.....+..++... +-.+.+.|+.+..... +-+......+.........-++..
T Consensus 158 ~~ar~~Y~~Al~~---D~~c~Ea~~~lvs~~-----mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~ 229 (611)
T KOG1173|consen 158 EEARDKYKEALLA---DAKCFEAFEKLVSAH-----MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESL 229 (611)
T ss_pred HHHHHHHHHHHhc---chhhHHHHHHHHHHH-----hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhcccccc
Confidence 6666666555543 111112222222211 1112122222221100 001111111111110000000000
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
..-.+..-.+..-+......-..-+...+++.+..++.+.+.+..+......--.+-..+..|+..+-..+-.++.+. .
T Consensus 230 ~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-y 308 (611)
T KOG1173|consen 230 TRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-Y 308 (611)
T ss_pred ccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-C
Confidence 000000111222233333344445556677777777777776654433333322333445556655555555555544 2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK--GLDPDVSFYN 439 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~--~~~p~~~~~~ 439 (652)
+-...+|-++.--|...|+..+|.+.|.+....+.. =...|-.+...|+-.|..++|+..+...-+. |.. -+..|
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY- 385 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY- 385 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH-
Confidence 334566777766677778888888888776654332 3347777788888888888888777766554 211 11222
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCC----CHhhHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVAP----DATTYTSLLE 513 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p----~~~~~~~l~~ 513 (652)
+..-|.+.++.+.|.+.|.+..... +.|+...+-+.-.....+.+.+|..+|+..+.. .+.+ -..+++.|..
T Consensus 386 -lgmey~~t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH 463 (611)
T KOG1173|consen 386 -LGMEYMRTNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH 463 (611)
T ss_pred -HHHHHHHhccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence 3345667788888888888777653 556677777777767777888888888777632 1111 2345667777
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|.+.+.+++|+..+++.+...+. +..++.+++..|...|+++.|++.|.+...
T Consensus 464 ~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 464 AYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 788888888888888888777766 777888888888888888888888887766
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.5e-10 Score=115.88 Aligned_cols=483 Identities=13% Similarity=0.075 Sum_probs=292.7
Q ss_pred HHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006281 105 SVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (652)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 184 (652)
.++-.+...|+.|+..+|..+|..|+..|+.+.|- +|..|.-.....+...++.++.+....++.+.+.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk---------- 79 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK---------- 79 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC----------
Confidence 45667788899999999999999999999999999 9999988777778889999999999999888776
Q ss_pred CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhh-CCCCcCHHH
Q 006281 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRI-RECKPDFIA 263 (652)
Q Consensus 185 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~~~~p~~~~ 263 (652)
.|...||..++.+|...||+.. |+...+. ...+...+...|.-..-..++-.+.- .+.-||..+
T Consensus 80 -ep~aDtyt~Ll~ayr~hGDli~----fe~veqd----------Le~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n 144 (1088)
T KOG4318|consen 80 -EPLADTYTNLLKAYRIHGDLIL----FEVVEQD----------LESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN 144 (1088)
T ss_pred -CCchhHHHHHHHHHHhccchHH----HHHHHHH----------HHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH
Confidence 6788999999999999999876 3333321 01134455566666655566555432 234566554
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHH-H
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE-RRICEAKELGEVIVSGKFTIDDDVLNALIGS-V 341 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 341 (652)
. +.-..-.|-++.+++++..+......- .+..+++-+... ..+++-..+...... .+++.++.+++.. .
T Consensus 145 ~---illlv~eglwaqllkll~~~Pvsa~~~---p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~al 215 (1088)
T KOG4318|consen 145 A---ILLLVLEGLWAQLLKLLAKVPVSAWNA---PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRAL 215 (1088)
T ss_pred H---HHHHHHHHHHHHHHHHHhhCCcccccc---hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHH
Confidence 2 333444566666666665543221110 111123333322 223333333332222 5777788777765 5
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 342 SSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421 (652)
Q Consensus 342 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 421 (652)
..|+.+.|..++.+|.+.|.+.+..-|..++-+ .++...++.++..|.+.|+.|+..|+...+..+..+|....+.
T Consensus 216 aag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~- 291 (1088)
T KOG4318|consen 216 AAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE- 291 (1088)
T ss_pred hcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc-
Confidence 678899999999999999988888877777644 7888888888888889999999988888777777655422211
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC-----Chh-----hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 422 VIQEMKRKGLDPDVSFYNSLMEACCRED-----LLR-----PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g-----~~~-----~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (652)
.|. +....+++-...-.-.| +.+ .....+.+..-.|+......|...+.. ..+|.-++..+
T Consensus 292 -------e~s-q~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veq 362 (1088)
T KOG4318|consen 292 -------EGS-QLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQ 362 (1088)
T ss_pred -------ccc-chhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHH
Confidence 111 12222222222211122 111 111112222222433334444443332 23566666666
Q ss_pred HHHHHHHC--CCCC-CHhhHHHHHHHHHc----------------------CCCHHHHHHHHHHhhh-------------
Q 006281 492 LFHNMLEK--GVAP-DATTYTSLLEGLCQ----------------------ETNLQAAFEVFNKSVN------------- 533 (652)
Q Consensus 492 ~~~~m~~~--~~~p-~~~~~~~l~~~~~~----------------------~g~~~~a~~~~~~~~~------------- 533 (652)
+-..|..- ...+ ++..|..++.-|.+ ..+..+..++......
T Consensus 363 lvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~ 442 (1088)
T KOG4318|consen 363 LVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSST 442 (1088)
T ss_pred HHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHH
Confidence 66555421 1111 23334433333322 1112222222221100
Q ss_pred ---CCCCc-------cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 534 ---HDVML-------ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 534 ---~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
....| -..+-+.++..+++.-+..+++..-++.... .-+..|..++.-+..+...+.|....+++...+
T Consensus 443 Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d 521 (1088)
T KOG4318|consen 443 ELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LFAGLYALLIKLMDLHDKLEYALSFVDEIDTRD 521 (1088)
T ss_pred HHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHhhhHHHHHHHHHHHhchhhhcccc
Confidence 00111 1233455566666666666666555555442 123567789999999999999999999988765
Q ss_pred CCC--cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 604 PTM--LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 604 ~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
... ....+..+.+.+.+.+...++.++++++++
T Consensus 522 ~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 522 ESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred hhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhH
Confidence 432 234456699999999999999999999987
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.4e-08 Score=100.81 Aligned_cols=467 Identities=13% Similarity=0.027 Sum_probs=308.2
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH---HhcCChhhH-------------------HHH----HHHHHhCC
Q 006281 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL---ASDGYIDNA-------------------LKM----FDEMSHRG 184 (652)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~~~a-------------------~~~----~~~m~~~~ 184 (652)
..+..+.++.-+......+...++.++-.+-..+ ...++.+.+ .-. +.++....
T Consensus 239 ~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee~~Lllli~es~i~Re~~~d~ilslm~~~~k~r~~~ 318 (799)
T KOG4162|consen 239 KLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEEVILLLLIEESLIPRENIEDAILSLMLLLRKLRLKK 318 (799)
T ss_pred CCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHhh
Confidence 3456666666666665555554554444433322 223333333 221 22222233
Q ss_pred CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHH-H
Q 006281 185 VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFI-A 263 (652)
Q Consensus 185 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~ 263 (652)
+.-|...|..+.-++...|+++.+.+.|++...- .......|+.+...|...|.-..|..+++.-......|+.. .
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~---~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~ 395 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF---SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISV 395 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchH
Confidence 4557778888887888899999999999999865 44556788888889999999999999998876554334433 3
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHHHHHhc--C----CCCChhhHHHHHHHHHc----cC-------CHHHHHHHHHHHHcC
Q 006281 264 YRIVAEEFK-LMGSVFEREVVLKKKRKL--G----VAPRTNDYREFILGLIV----ER-------RICEAKELGEVIVSG 325 (652)
Q Consensus 264 ~~~ll~~~~-~~g~~~~a~~~~~~~~~~--~----~~p~~~~~~~ll~~~~~----~~-------~~~~a~~~~~~~~~~ 325 (652)
+-..-..|. +.+..++++++-.+.... + +.|- .|..+.-+|.. .. ...++.+.++..++.
T Consensus 396 ~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~ 473 (799)
T KOG4162|consen 396 LLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQF 473 (799)
T ss_pred HHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhc
Confidence 333334443 457778888877776652 1 2222 33333333322 11 234567778888777
Q ss_pred CCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH
Q 006281 326 KFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV 405 (652)
Q Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 405 (652)
+.......|...+.+..+++...|++...+..+-+..-+...|..+.-.+...+++.+|+.+.+...+.-.. |......
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~~~ 552 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLMDG 552 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhchh
Confidence 766666778888888888999999999999999877778889999988899999999999999987764211 2222222
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc---------------------CC-----CC--CHHHHHHHHHHHHhcCC-hhhHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRK---------------------GL-----DP--DVSFYNSLMEACCREDL-LRPAKK 456 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~---------------------~~-----~p--~~~~~~~ll~~~~~~g~-~~~a~~ 456 (652)
-+..-..-++.++++.....+... |. .| ...++..+..-....+. ......
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~ 632 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK 632 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc
Confidence 222223356666666555544321 00 00 01122211111110000 000000
Q ss_pred HHHHHHHcCCCC--C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHH
Q 006281 457 LWDQMFASGCSG--N------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVF 528 (652)
Q Consensus 457 ~~~~~~~~~~~~--~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 528 (652)
+....+.| + ...|......+.+.++.++|...+.+..... .-....|......+...|..++|.+.|
T Consensus 633 ----Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af 707 (799)
T KOG4162|consen 633 ----LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAF 707 (799)
T ss_pred ----cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHH
Confidence 11111122 2 2245566677888999999999998888652 235556666667788899999999999
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH--HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATK--LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..++..++. ++.+..++..++.+.|+..-|.. ++..+.+ +|.++.+|..++..+.+.|+.+.|.+.|.-+.+..+.
T Consensus 708 ~~Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 708 LVALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred HHHHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 999988887 77889999999999998777777 8888887 8999999999999999999999999999999998877
Q ss_pred CcHH
Q 006281 606 MLQE 609 (652)
Q Consensus 606 ~~~~ 609 (652)
.+..
T Consensus 787 ~PV~ 790 (799)
T KOG4162|consen 787 NPVL 790 (799)
T ss_pred CCcc
Confidence 6543
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-11 Score=126.85 Aligned_cols=251 Identities=12% Similarity=0.037 Sum_probs=177.2
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT---------SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 450 (652)
++++|...|++..+..+. +...|..+..+|.. .+++++|...+++..+.... +...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHccC
Confidence 456788888888776543 45556555554442 24578999999999887543 67778888888889999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
+++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.... +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999999875 556778888889999999999999999999876433 222333444456678899999999998
Q ss_pred hhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 531 SVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
++....+-++..+..+..++...|++++|.+.+.++... +........++..|...| ++|...++++.+..-..+..
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~ 509 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNN 509 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcC
Confidence 877653335666777888889999999999999887664 334445556777777777 47777777766542221111
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
... +...|.-.|+.+.+.-. +++.+.|
T Consensus 510 ~~~-~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 510 PGL-LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred chH-HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 111 44445566776666555 7777653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.6e-08 Score=94.44 Aligned_cols=437 Identities=9% Similarity=0.075 Sum_probs=241.9
Q ss_pred HhHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 120 SVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 120 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
..|...+..+..+|++......|+..... .+.....+|...+......+-++.+..++++.++.. +..-.-.+.-
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~~----P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKVA----PEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhcC----HHHHHHHHHH
Confidence 34555556666667777777777665432 333344567777777777777777777777776542 2234455666
Q ss_pred HHhcCcHHHHHHHHHHHHhcc----CCCCCchhhHHHHHHHHHccCCHHHH---HHHHHHHhhCCCCcCH--HHHHHHHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRE----NSMINGSVIAVLIIHGFCKGKRVEEA---FKVLDELRIRECKPDF--IAYRIVAE 269 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~g~~~~A---~~~~~~m~~~~~~p~~--~~~~~ll~ 269 (652)
++..+++++|.+.+..+...+ ...+.+...|..+.+..++.-+.-.- ..++..+..+ -+|. ..|.+|.+
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAd 256 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLAD 256 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHH
Confidence 677777777777776665431 11233344455444444443332222 2223333222 2332 35777777
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCH----------------------HHHHHHHHHHHcCCC
Q 006281 270 EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRI----------------------CEAKELGEVIVSGKF 327 (652)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~----------------------~~a~~~~~~~~~~~~ 327 (652)
.|.+.|.+++|..+|++....- .+...|..+..+|..-... +-...-|+.+.....
T Consensus 257 YYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~ 334 (835)
T KOG2047|consen 257 YYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRP 334 (835)
T ss_pred HHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccc
Confidence 7777777777777777655432 2223344444444332111 111122222222110
Q ss_pred -----------CCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHH
Q 006281 328 -----------TIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVP------TLSTLSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 328 -----------~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
+.++..|..-+ .+..++..+-...|.+..+. +.| -...|..+.+.|-..|+++.|..+|++
T Consensus 335 ~~lNsVlLRQn~~nV~eW~kRV-~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 335 LLLNSVLLRQNPHNVEEWHKRV-KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred hHHHHHHHhcCCccHHHHHhhh-hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 00111111111 12345566667777776653 211 134567778889999999999999999
Q ss_pred HHhCCCCcC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------------CHHHHHHHHHHHHhcCC
Q 006281 391 LSANDYFTD---MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-----------------DVSFYNSLMEACCREDL 450 (652)
Q Consensus 391 ~~~~~~~~~---~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-----------------~~~~~~~ll~~~~~~g~ 450 (652)
..+...+.- ..+|......-.+..+++.|+.+.+......-.| +...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 887654321 2356666666677888999999888765431111 22345555555566778
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHc---CCCHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQ---ETNLQAAFE 526 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~---~g~~~~a~~ 526 (652)
++....+++++.+..+. ++........-+-.+.-++++.++|++-+..=.-|+. ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888888888876432 2222222222333455677788888776654333443 356665554432 336888888
Q ss_pred HHHHhhhCCCCccHH--HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 527 VFNKSVNHDVMLARS--ILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|+++++ +.+|... +|-.....-.+.|....|+.+++++..
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 8888887 4433321 222233333356777777777776544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.7e-12 Score=111.81 Aligned_cols=242 Identities=12% Similarity=0.070 Sum_probs=208.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFY-NSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~-~~ll~ 443 (652)
..--+.+.++|.+.|.+.+|.+.|+...+.. |-+.+|-.|-++|.+..++..|+.++.+-.+. .|..+|| .-+.+
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~AR 298 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQAR 298 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHH
Confidence 3334567889999999999999999988764 45568888999999999999999999998876 5666665 44556
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 523 (652)
.+-..++.++|.++++...+.. +.++.....+...|.-.++++-|+..|+++++.|+. +...|+.+.-+|.-.+.++-
T Consensus 299 i~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~ 376 (478)
T KOG1129|consen 299 IHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDL 376 (478)
T ss_pred HHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhh
Confidence 6778899999999999999875 677888888888899999999999999999999988 88899999999999999999
Q ss_pred HHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 524 AFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 524 a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
++.-|++++..--.| -.++|..+.......|++.-|.+.|+-... ++....+++.|+-.-.+.|+.++|..++..+.
T Consensus 377 ~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 377 VLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred hHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999987754333 456799999999999999999999998766 77788899999999999999999999999999
Q ss_pred hcCCCCcHHHHH
Q 006281 601 ESSPTMLQEISA 612 (652)
Q Consensus 601 ~~~~~~~~~~~~ 612 (652)
...|......+|
T Consensus 457 s~~P~m~E~~~N 468 (478)
T KOG1129|consen 457 SVMPDMAEVTTN 468 (478)
T ss_pred hhCccccccccc
Confidence 999987666665
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-07 Score=92.52 Aligned_cols=537 Identities=10% Similarity=0.057 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVN-KITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+..|-.-++.+.++++....+..|+..... .+.--..+|...+......+-++-+..++++..+. ++..-+--+.
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie 177 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIE 177 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHH
Confidence 345666677777888888888888876654 23334457888888888888889999999988765 5555777788
Q ss_pred HHHhcCChhhHHHHHHHHHhCC------CccCcccHHHHHHHHHhcCcH---HHHHHHHHHHHhccCCCCC-chhhHHHH
Q 006281 163 VLASDGYIDNALKMFDEMSHRG------VEFSTIGFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMIN-GSVIAVLI 232 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~-~~~~~~~l 232 (652)
.+++.+++++|-+.+....... .+.+...|..+-+...+.-+. -....+++.+... .++ -...|.+|
T Consensus 178 ~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r---ftDq~g~Lw~SL 254 (835)
T KOG2047|consen 178 YLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR---FTDQLGFLWCSL 254 (835)
T ss_pred HHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc---CcHHHHHHHHHH
Confidence 8899999999999888876432 122334454444444443222 2233444444433 222 24578899
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC----------------------HHHHHHHHHHHHhc
Q 006281 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS----------------------VFEREVVLKKKRKL 290 (652)
Q Consensus 233 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~----------------------~~~a~~~~~~~~~~ 290 (652)
.+-|.+.|.+++|..+|++.... ..++.-|..+.++|+.... ++-...-|+.+...
T Consensus 255 AdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~r 332 (835)
T KOG2047|consen 255 ADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNR 332 (835)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhc
Confidence 99999999999999999987654 1233444555555443211 11222223333322
Q ss_pred CC-C-------CChhhHHHHH-HHHHccCCHHHHHHHHHHHHcC-CCCC----CHHHHHHHHHHHhc-CChhHHHHHHHH
Q 006281 291 GV-A-------PRTNDYREFI-LGLIVERRICEAKELGEVIVSG-KFTI----DDDVLNALIGSVSS-IDPRSAIVFFNF 355 (652)
Q Consensus 291 ~~-~-------p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~-~~~~----~~~~~~~l~~~~~~-~~~~~a~~~~~~ 355 (652)
+. - -|.......+ +.-+..|+..+....+.+.++. .+.. -...|..+-..|.. |+.+.|..+|++
T Consensus 333 r~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifek 412 (835)
T KOG2047|consen 333 RPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEK 412 (835)
T ss_pred cchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 11 0 0111111111 1122244555555555555443 1111 11235555565654 688999999988
Q ss_pred HHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-----------------cCHHHHHHHHHHHHhcCC
Q 006281 356 MIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYF-----------------TDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 356 m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~li~~~~~~g~ 415 (652)
..+-..+-- ..+|......-.+..+++.|.++.+......-. .+...|...++.--..|-
T Consensus 413 a~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gt 492 (835)
T KOG2047|consen 413 ATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGT 492 (835)
T ss_pred hhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhcc
Confidence 776543322 344555555556777888888887776532111 123355666666666788
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSE---VGEIEGALR 491 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~g~~~~A~~ 491 (652)
++....+++++.+..+- ++........-+-.+.-++++.+++++-+..=-.|++ ..|+..+.-+.+ ...++.|..
T Consensus 493 festk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRd 571 (835)
T KOG2047|consen 493 FESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARD 571 (835)
T ss_pred HHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 88888889988877653 3333323333344556678888888877665223443 467766665554 236788999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHH--HHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEG--LCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+|++.++ |+.|...-+-.|+-+ =-+.|....|+.+++++.. .+.+. -..|+.+|.-....=.......+++++.
T Consensus 572 LFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~-~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaI 649 (835)
T KOG2047|consen 572 LFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS-AVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAI 649 (835)
T ss_pred HHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHH
Confidence 9999988 666654333333222 2245778888888887543 33322 2346666554443333444555666655
Q ss_pred hCCCCch---hHHHHHHHHhccccHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 568 SDLGHSD---SHVILLKSLADAREVEMAIEHIKWIQES-SPTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 568 ~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+.-++.. .....+..-.+.|..+.|..+|....+. +|......|+..=..-.++|+-+-..++++
T Consensus 650 e~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLR 718 (835)
T KOG2047|consen 650 ESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLR 718 (835)
T ss_pred HhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 5323222 2335566667888888888888887775 566666777766666678888555555553
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.9e-11 Score=108.69 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=90.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34455555666666666666666666554421 134444555555555555555555555555443 3334444555555
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+...|++++|.+.+++..+....| ....+..+...+...|++++|...+++.+...+. +...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence 555555555555555554321111 1223333344444444444444444444443322 23333344444444444444
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
|.+.+++... .+..+..+..++..+...|+.++|..+.+.+
T Consensus 188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4444444333 1222233333333444444444444443333
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-11 Score=109.97 Aligned_cols=201 Identities=16% Similarity=0.101 Sum_probs=169.7
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
....+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++++|.+.+++..+.... +...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence 35667778889999999999999999998764 556788889999999999999999999999976433 5667888888
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDV-MLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
.+...|++++|.+.+++++.... ......+..+..++...|++++|.+.+++... .|..+..+..++..+...|++++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999887542 22455677889999999999999999999877 56667788899999999999999
Q ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 592 AIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|.+.++++.+..|... ..+..++..+...|+.++|..+.+.+...
T Consensus 188 A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQTYNQTA-ESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHhCCCCH-HHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999998876654 44445888888999999999998887654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.43 E-value=7.5e-08 Score=93.87 Aligned_cols=131 Identities=14% Similarity=0.131 Sum_probs=85.6
Q ss_pred CCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 467 SGNLKTY--NILISKFSEVGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 467 ~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
+|+...| -.++..|-..|+++.|..+++..+++ .|+. ..|..-.+.+...|++++|..+++++.+.+.. |..+-
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~a-DR~IN 442 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTA-DRAIN 442 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccch-hHHHH
Confidence 4444443 34566777888888888888888754 5553 34555567788888888888888887777653 65555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhCCCCch--------hHH--HHHHHHhccccHHHHHHHHHHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSSDLGHSD--------SHV--ILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------~~~--~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
...+.-..+.++.++|.+++.....+..+.. .|. .-+.+|.+.|++-.|+.-+..+.
T Consensus 443 sKcAKYmLrAn~i~eA~~~~skFTr~~~~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~ALKkfh~i~ 509 (700)
T KOG1156|consen 443 SKCAKYMLRANEIEEAEEVLSKFTREGFGAVNNLAEMQCMWFQLEDGEAYLRQNKLGLALKKFHEIE 509 (700)
T ss_pred HHHHHHHHHccccHHHHHHHHHhhhcccchhhhHHHhhhHHHhHhhhHHHHHHHHHHHHHHHHhhHH
Confidence 5677777788888888888877766432221 121 23456666777666655444443
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.6e-08 Score=98.44 Aligned_cols=425 Identities=12% Similarity=0.012 Sum_probs=210.0
Q ss_pred hcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHH
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEA 245 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 245 (652)
..+++...++..+.+.+. ..-...|....--.+...|+.++|.......... .+.+.+.|..+.-.+....++++|
T Consensus 19 E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~---d~~S~vCwHv~gl~~R~dK~Y~ea 94 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN---DLKSHVCWHVLGLLQRSDKKYDEA 94 (700)
T ss_pred HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhcc---CcccchhHHHHHHHHhhhhhHHHH
Confidence 445666677777766663 2222333333333355567777777777666655 555666676666666666677777
Q ss_pred HHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHc
Q 006281 246 FKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVS 324 (652)
Q Consensus 246 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (652)
.+.|......+. -|...|.-+.-.-++.|+++.....-..+.+. .|+ ...|..+..+..-.|++..|..+.+...+
T Consensus 95 iKcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 95 IKCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred HHHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777665432 24555555544445555655555544444432 122 22333344444445555555555544443
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH------HHHHhcCChHHHHHHHHHHHhCCCCc
Q 006281 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS------KNLCKRNKSDELVEVYKVLSANDYFT 398 (652)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~ 398 (652)
... ..|+...+.... ....+.|.++.|.+.+......-+.
T Consensus 172 t~~---------------------------------~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D- 217 (700)
T KOG1156|consen 172 TQN---------------------------------TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD- 217 (700)
T ss_pred hhc---------------------------------cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH-
Confidence 321 123333332221 1234556666666665554432111
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCChhhHH-HHHHHHHHcCCCCCHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC-REDLLRPAK-KLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l 476 (652)
....-..-...+.+.+++++|..++..++.. .||..-|...+..+. +-.+.-++. .+|....+. .|....-..+
T Consensus 218 kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rl 293 (700)
T KOG1156|consen 218 KLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRL 293 (700)
T ss_pred HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--Ccccccchhc
Confidence 2222233445566677777777777777766 455555544443333 222222232 445444432 1221111111
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH----HHHHHHHhhhCC----------CCccHH
Q 006281 477 ISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA----AFEVFNKSVNHD----------VMLARS 541 (652)
Q Consensus 477 ~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~----------~~~~~~ 541 (652)
--......+ .+..-.++..+.+.|+.+--..+. ..|-.....+- +..+...+-..+ -+|...
T Consensus 294 plsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~---SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~Pttl 370 (700)
T KOG1156|consen 294 PLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLR---SLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTL 370 (700)
T ss_pred cHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhH---HHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHH
Confidence 111111122 233334455555666543322222 22221111111 111111110110 022333
Q ss_pred H--HHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 542 I--LSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 542 ~--~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
. +..++..+-+.|+++.|..+++.+.. .|..++-|..-++++...|++++|...++++.+.+-.+. .+-...+...
T Consensus 371 lWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR-~INsKcAKYm 449 (700)
T KOG1156|consen 371 LWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADR-AINSKCAKYM 449 (700)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhH-HHHHHHHHHH
Confidence 3 23345556667777777777777766 344445566666777777777777777777777665442 2222355666
Q ss_pred hcCCCCchHHHHHHHHHHccc
Q 006281 619 SSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~~g~ 639 (652)
.+.++.++|.++..++...|.
T Consensus 450 LrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 450 LRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHccccHHHHHHHHHhhhccc
Confidence 677777777777776666554
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.3e-11 Score=123.40 Aligned_cols=216 Identities=17% Similarity=0.047 Sum_probs=171.2
Q ss_pred CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH---------hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 414 GRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACC---------REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (652)
+..++|+..|++..+. .|+ ...|..+..++. ..+++++|...+++..+.+ +.+...+..+...+...
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~ 351 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIH 351 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHc
Confidence 3468999999999987 444 445555554443 2345789999999999886 66788888999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
|++++|...|++..+.+.. +...+..+...+...|++++|...++++++.++. +...+..++..+...|++++|+..+
T Consensus 352 g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~ 429 (553)
T PRK12370 352 SEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG 429 (553)
T ss_pred cCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence 9999999999999987433 5667888889999999999999999999998876 3334444555677789999999999
Q ss_pred HHhhh-C-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 564 RGLSS-D-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 564 ~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+++.. . |..+..+..++.++...|++++|.+.++++....|... ...+.+...|...|+ +|...++++.+.
T Consensus 430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~--~a~~~l~~ll~~ 502 (553)
T PRK12370 430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGL-IAVNLLYAEYCQNSE--RALPTIREFLES 502 (553)
T ss_pred HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhH-HHHHHHHHHHhccHH--HHHHHHHHHHHH
Confidence 99875 3 44566678899999999999999999999988877764 444557778888884 888888887664
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7.9e-08 Score=86.58 Aligned_cols=455 Identities=12% Similarity=0.013 Sum_probs=236.4
Q ss_pred ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHH
Q 006281 61 LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFS 140 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 140 (652)
+.+..-|..+.++.... +-.-...+=..+..++.+.|++++|..++..+.+.. .++...+-.|.-++.-.|.+.+|..
T Consensus 35 ~rDytGAislLefk~~~-~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~eA~~ 112 (557)
T KOG3785|consen 35 NRDYTGAISLLEFKLNL-DREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYIEAKS 112 (557)
T ss_pred cccchhHHHHHHHhhcc-chhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHHHHHH
Confidence 34566777777766422 211222233345556678999999999999887755 5777777778777778888999988
Q ss_pred HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccC
Q 006281 141 VFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220 (652)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 220 (652)
+-....+ ++-.-..|+..-.+.++-++-..+-+.+.+. ...-.++.......-.+.+|+.++..+...
T Consensus 113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-- 180 (557)
T KOG3785|consen 113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD-- 180 (557)
T ss_pred HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence 8665532 3334445556666777776666665555432 122223444444556789999999999877
Q ss_pred CCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH
Q 006281 221 SMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR 300 (652)
Q Consensus 221 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 300 (652)
.|.-...-..+.-+|.+..-++-+.+++.--.+. ++.+....|..+....+.=.-..|+.-..++...+-.. |
T Consensus 181 -n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~- 253 (557)
T KOG3785|consen 181 -NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----Y- 253 (557)
T ss_pred -ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----c-
Confidence 3332222233556788888888888888776654 22234445544444444222222222223332221100 0
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 301 EFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNK 380 (652)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 380 (652)
..+.-+++.+-+ .-.+-+.|++++-.+... .|. .-..++--|.+.++
T Consensus 254 ~f~~~l~rHNLV-----------------------------vFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 254 PFIEYLCRHNLV-----------------------------VFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQND 300 (557)
T ss_pred hhHHHHHHcCeE-----------------------------EEeCCccHHHhchHHHhh--ChH--hhhhheeeeccccc
Confidence 001111111000 000112333333222211 111 11123334556666
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChh
Q 006281 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-------RLREAYGVIQEMKRKGLDPDVS-FYNSLMEACCREDLLR 452 (652)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-------~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~ 452 (652)
+.+|..+.+++... .|-....-.++ ++..| ...-|.+.|+-.-..+..-|.. --.++..++.-..+++
T Consensus 301 VqeA~~L~Kdl~Pt--tP~EyilKgvv--~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFd 376 (557)
T KOG3785|consen 301 VQEAISLCKDLDPT--TPYEYILKGVV--FAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFD 376 (557)
T ss_pred HHHHHHHHhhcCCC--ChHHHHHHHHH--HHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHH
Confidence 66666665544321 11111111111 11222 2334444444433333222211 1233344444445666
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH-HHHHHHcCCCHHHHHHHHHHh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS-LLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~-l~~~~~~~g~~~~a~~~~~~~ 531 (652)
+.+-.++.+..-=...|...+| +.++++..|++.+|+++|-+.....++ |..+|.+ |.++|.+.++++.|+.++-++
T Consensus 377 dVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 377 DVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 6666666665543233444443 667777777888888777776644444 4555544 445667777777777766543
Q ss_pred hhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHH
Q 006281 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577 (652)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (652)
-. +.-.-..+..+..-|.+.+.+--|-+.|+.+....++++.|.
T Consensus 455 ~t--~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEnWe 498 (557)
T KOG3785|consen 455 NT--PSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPENWE 498 (557)
T ss_pred CC--chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccccC
Confidence 21 111223345555667777777767777766665444555553
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.4e-08 Score=91.70 Aligned_cols=192 Identities=12% Similarity=-0.016 Sum_probs=97.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
...++++.|+.+-++.++...+ +...|..-...+...|++++|.-.|+.....- +-+..+|..|+.+|...|++.+|.
T Consensus 311 ~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~ 388 (564)
T KOG1174|consen 311 YDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEAN 388 (564)
T ss_pred hhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHH
Confidence 3344555555555555544322 33333333344455556666665565555432 345556666666666666666655
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-HHHH-cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 491 RLFHNMLEKGVAPDATTYTSLL-EGLC-QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~-~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
-.-+..... +..+..+...+. ..|. ...--++|.+++++.+...+. -......+...+...|..++++.++++...
T Consensus 389 ~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~ 466 (564)
T KOG1174|consen 389 ALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKLLEKHLI 466 (564)
T ss_pred HHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHHHHHHHh
Confidence 554444332 122333333331 1221 222335555555555554443 223344455555666666666666666655
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.++..-+..|+..+...+.+.+|.++|..++..+|.+
T Consensus 467 ~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 467 IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 55555555566666666666666666666666666655
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.4e-08 Score=97.65 Aligned_cols=143 Identities=10% Similarity=0.001 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHH--------HhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFN--------KSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
.+.+|.+++...-+....-.......++......|+++.|.+++. ...+.+. .+.+...+...+.+.++-
T Consensus 356 ~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~--~P~~V~aiv~l~~~~~~~ 433 (652)
T KOG2376|consen 356 KHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKH--LPGTVGAIVALYYKIKDN 433 (652)
T ss_pred HHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhcc--ChhHHHHHHHHHHhccCC
Confidence 467777777777654322224455556666778889999888888 3333333 344666777777777776
Q ss_pred HHHHHHHHHhhh----CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH
Q 006281 557 LVATKLLRGLSS----DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 557 ~~A~~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 628 (652)
+-|..++.++.. ...... .+..++..-.+.|+-++|..+++++.+.+|++...+.. ++.+|++. +.+.|.
T Consensus 434 ~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~-lV~a~~~~-d~eka~ 511 (652)
T KOG2376|consen 434 DSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQ-LVTAYARL-DPEKAE 511 (652)
T ss_pred ccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHH-HHHHHHhc-CHHHHH
Confidence 666666665533 111112 22234444466789999999999999988888666665 77777655 345555
Q ss_pred HHH
Q 006281 629 LLL 631 (652)
Q Consensus 629 ~~~ 631 (652)
.+-
T Consensus 512 ~l~ 514 (652)
T KOG2376|consen 512 SLS 514 (652)
T ss_pred HHh
Confidence 443
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.9e-07 Score=86.05 Aligned_cols=268 Identities=10% Similarity=0.016 Sum_probs=164.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCC--CHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTI--DDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLS 372 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~ 372 (652)
|.+....+..++...|+..+|...|+.....++.. ....|..++ -..|+.+....+...+....- .+...|..-.
T Consensus 231 NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL--~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~ 307 (564)
T KOG1174|consen 231 NEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLL--GQEGGCEQDSALMDYLFAKVK-YTASHWFVHA 307 (564)
T ss_pred cHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHH--HhccCHhhHHHHHHHHHhhhh-cchhhhhhhh
Confidence 33444455555555566666655555554321110 001111111 123455555555555443321 1222222223
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 452 (652)
...-...++..|..+-++.++.+.. +...|-.-..++...|++++|.-.|+..+.... -+...|.-|+.+|...|++.
T Consensus 308 ~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~k 385 (564)
T KOG1174|consen 308 QLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFK 385 (564)
T ss_pred hhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHH
Confidence 3344567788888888887776443 445555555777888888888888888776531 25678888999998888888
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILI-SKFS-EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+|.-+-+...+. ++.+..+.+.+. ..+. ....-++|..+++.... +.|+ ....+.+...|...|..++++.+++
T Consensus 386 EA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 386 EANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 888777666554 245556655552 3332 22334778888877664 3454 3455667777888888888998888
Q ss_pred HhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 530 KSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 530 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
+.+... ||....+.|.+.+...+.+.+|...|..+.. +|.+
T Consensus 463 ~~L~~~--~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~ 504 (564)
T KOG1174|consen 463 KHLIIF--PDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKS 504 (564)
T ss_pred HHHhhc--cccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccc
Confidence 766543 5777888888888888888888888887766 5443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-10 Score=97.80 Aligned_cols=195 Identities=13% Similarity=0.059 Sum_probs=104.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 517 (652)
...|...|...|+...|..-+++.++.. +.+..+|..+...|.+.|..+.|.+-|++....... +....|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHh
Confidence 3444455556666666666666666554 444555556666666666666666666665544322 34445555555555
Q ss_pred CCCHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
.|++++|.+.|++++... ..-...+|..++.+..+.|+.+.|.+.+++..+ +|..+.....++....+.|++-.|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 666666666666555433 111233555555555666666666666665555 455555555666666666666666666
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++......+-. ....-..+.+-.+.|+-+.+-++=..+.
T Consensus 196 ~~~~~~~~~~~-A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQ-AESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhccccc-HHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 66555555422 2222223333444555555544444333
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=3e-09 Score=101.26 Aligned_cols=238 Identities=14% Similarity=0.125 Sum_probs=171.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH-----
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM----- 442 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll----- 442 (652)
...+.++.-+..+++.+.+.+....+.. .+..-++....+|...|.+.++........+.|.. ...-|+.+-
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence 4456667777888889999888888765 36666777778888888888888887777766543 233333333
Q ss_pred --HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 443 --EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 443 --~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
.++.+.++++.++..|.+.......|+. ..+....++++...+...-.+..- ..-...-...+.+.|+
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd 373 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD 373 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence 3555667888899888887665333332 223344555665555554332221 1222233667889999
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+..|+..|.+++..++. |...|....-+|.+.|.+.+|++=.+...+ +|.....|..-+.++....+|++|.+.|.+.
T Consensus 374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999976 899999999999999999999998888777 6666777888888888889999999999999
Q ss_pred HhcCCCCcHHHHHHHHHHhhc
Q 006281 600 QESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~ 620 (652)
++.+|+.. .....+..++..
T Consensus 453 le~dp~~~-e~~~~~~rc~~a 472 (539)
T KOG0548|consen 453 LELDPSNA-EAIDGYRRCVEA 472 (539)
T ss_pred HhcCchhH-HHHHHHHHHHHH
Confidence 99999874 333335555443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-07 Score=93.32 Aligned_cols=117 Identities=21% Similarity=0.197 Sum_probs=64.7
Q ss_pred CChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPT-LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGV 422 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 422 (652)
|++++|+.+++..++.. |+ ...|..-.+.+-..|++.+|.+.++.....+.. |-..-+..+..+.+.|++++|.++
T Consensus 208 g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~ 284 (517)
T PF12569_consen 208 GDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKT 284 (517)
T ss_pred CCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44444444444444432 22 344455555666667777777777666665544 555555666666667777777777
Q ss_pred HHHHHHcCCCCCHHH--------HHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 423 IQEMKRKGLDPDVSF--------YNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
+....+.+..|-... ..-...+|.+.|++..|++.|..+.+
T Consensus 285 ~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 285 ASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666665543322111 13334556666666666655554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.4e-06 Score=89.28 Aligned_cols=127 Identities=7% Similarity=0.026 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHhCC------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhH
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQVKVNK------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEIC 157 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 157 (652)
..-+..+.+.|.+.|-...|.+.+..+.... ...++. -+-.|.-.-.++.+.+.++.|...+++.+..+.
T Consensus 606 HyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pE----wLv~yFg~lsve~s~eclkaml~~NirqNlQi~ 681 (1666)
T KOG0985|consen 606 HYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPE----WLVNYFGSLSVEDSLECLKAMLSANIRQNLQIV 681 (1666)
T ss_pred cccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHH----HHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 3346788888999998888887766553321 001111 112233445678888888888877777666666
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhC-----------CCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 158 NSLLAVLASDGYIDNALKMFDEMSHR-----------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~m~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
-.+..-|...--.+..+++|+..... ++.-|+...-..|.+.|+.|.+.+..++.++
T Consensus 682 VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 682 VQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred HHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 55555565555566667777766532 3455666777778888888888777766543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.7e-11 Score=80.52 Aligned_cols=49 Identities=45% Similarity=0.875 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5556666666666666666666666666666666666666666666654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.5e-09 Score=98.17 Aligned_cols=219 Identities=11% Similarity=-0.025 Sum_probs=147.6
Q ss_pred CChHHHHHHHHHHHhCC-CCc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 379 NKSDELVEVYKVLSAND-YFT--DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
+..+.++.-+.++.... ..| ....|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence 44556666666666432 111 2345777778888889999999988888877533 5778888888888999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+.|+...+.. +.+..+|..+..++...|++++|.+.|++..+. .|+..........+...++.++|.+.|++.....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence 9999888764 445677888888888889999999999988865 3333212222222345678899999987655433
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSS--------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
. ++ .+. ........|+..++ +.++.+.. .+..+..|..++.++.+.|++++|+..|+++.+.+|.+
T Consensus 196 ~-~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~ 269 (296)
T PRK11189 196 D-KE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYN 269 (296)
T ss_pred C-cc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCch
Confidence 2 12 121 12233345555443 23333321 22344578889999999999999999999999988754
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.1e-11 Score=80.09 Aligned_cols=49 Identities=37% Similarity=0.785 Sum_probs=28.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.25 E-value=8.6e-07 Score=85.76 Aligned_cols=456 Identities=14% Similarity=0.087 Sum_probs=220.8
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH--HHHH--H
Q 006281 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL--LAVL--A 165 (652)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--l~~~--~ 165 (652)
-++.+...+++++|.+...++...+ +-+...+..=+-++.+.+.+++|+.+.+.-.. ..+++.. =.+| .
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHH
Confidence 3455666777777777777777765 55555666666667777777777755443211 1122221 2333 3
Q ss_pred hcCChhhHHHHHHHHHhCCCccCc-ccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHH
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFST-IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEE 244 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 244 (652)
+.+..++|+..++ |..++. .+...-.+.+.+.|++++|+.+++.+.+. +....+...-..++.+-.. -.
T Consensus 91 rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn-~~dd~d~~~r~nl~a~~a~----l~ 160 (652)
T KOG2376|consen 91 RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN-NSDDQDEERRANLLAVAAA----LQ 160 (652)
T ss_pred HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHh----hh
Confidence 5566777777666 222222 24444555666777777777777777665 2222222222222221110 11
Q ss_pred HHHHHHHHhhCCCCcCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHhcCC-------CC------Chh-hHHHHHHHHH
Q 006281 245 AFKVLDELRIRECKPDFIAYRI---VAEEFKLMGSVFEREVVLKKKRKLGV-------AP------RTN-DYREFILGLI 307 (652)
Q Consensus 245 A~~~~~~m~~~~~~p~~~~~~~---ll~~~~~~g~~~~a~~~~~~~~~~~~-------~p------~~~-~~~~ll~~~~ 307 (652)
+. +.+... ..| ..+|.. ....+...|++.+|+++++.....+. .- ... .-..+...+.
T Consensus 161 ~~-~~q~v~---~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 161 VQ-LLQSVP---EVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HH-HHHhcc---CCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 11 122222 122 122322 23344556777777777766522110 00 000 0011222333
Q ss_pred ccCCHHHHHHHHHHHHcCCCCCCHHH---HHHHHHHHhcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 308 VERRICEAKELGEVIVSGKFTIDDDV---LNALIGSVSSIDPR--SAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
..|+..+|..++..++.......+.. .|-++..-...++- .++..++... ..
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~-----------------------~~ 292 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQV-----------------------FK 292 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCCCchHHHHHhcchhhhccccccCchHHHHHHHHHH-----------------------HH
Confidence 44555555555555554443322111 11111110000000 0111111100 00
Q ss_pred HHHHHHHHHHhCCCCcCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhhHHHHHH
Q 006281 383 ELVEVYKVLSANDYFTDMESY-NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--REDLLRPAKKLWD 459 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~-~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~ 459 (652)
.+......+.... . ..... +.++..|. +..+.+.++....... .|.. .+.+++..+. +......+.+++.
T Consensus 293 l~~~~l~~Ls~~q-k-~~i~~N~~lL~l~t--nk~~q~r~~~a~lp~~--~p~~-~~~~ll~~~t~~~~~~~~ka~e~L~ 365 (652)
T KOG2376|consen 293 LAEFLLSKLSKKQ-K-QAIYRNNALLALFT--NKMDQVRELSASLPGM--SPES-LFPILLQEATKVREKKHKKAIELLL 365 (652)
T ss_pred hHHHHHHHHHHHH-H-HHHHHHHHHHHHHh--hhHHHHHHHHHhCCcc--CchH-HHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 0111111111100 0 11111 22223222 3344555554443322 3333 3333443332 2224667777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 460 QMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH--------NMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
...+..-.......-.+++.....|+++.|++++. ...+.+..|- +...+...+.+.++-+.|..++.++
T Consensus 366 ~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~A 443 (652)
T KOG2376|consen 366 QFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSA 443 (652)
T ss_pred HHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHH
Confidence 76655312224455566677788899999999888 4454444443 4455666677777777777777766
Q ss_pred hhCC--CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 532 VNHD--VML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 532 ~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
+..- -.+ -..++..++..-.+.|+-++|..+++++.. +|++......++.+|.+. +.++|..+-+++.
T Consensus 444 i~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 444 IKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 5421 111 122344445555677999999999999988 777888887888777653 5667776665544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.7e-08 Score=99.54 Aligned_cols=289 Identities=17% Similarity=0.135 Sum_probs=142.9
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHH-HHHHHHHHhc-
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAY-RIVAEEFKLM- 274 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~- 274 (652)
..+...|++++|++.++..... .++...........+.+.|+.++|..++..+.+++ |+-..| ..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~---I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ---ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh---CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhc
Confidence 3455666666666666655544 44444555556666666666666666666666653 333333 3333333111
Q ss_pred ----CCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHH
Q 006281 275 ----GSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAI 350 (652)
Q Consensus 275 ----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 350 (652)
.+.+....+++++...- |.......+.-.+.....+. ..+.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~---------------------------------~~~~ 131 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFK---------------------------------ERLD 131 (517)
T ss_pred ccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHH---------------------------------HHHH
Confidence 13444455555544332 22222211111111111111 1233
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC--------------CCCcCHHHH--HHHHHHHHhcC
Q 006281 351 VFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN--------------DYFTDMESY--NVMVSFLCTSG 414 (652)
Q Consensus 351 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------------~~~~~~~~~--~~li~~~~~~g 414 (652)
.++..+..+|+++ +|+.+-..|....+.+-..+++...... .-.|+...| .-+...|...|
T Consensus 132 ~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g 208 (517)
T PF12569_consen 132 EYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLG 208 (517)
T ss_pred HHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhC
Confidence 3444455555443 3333333344333333333444333211 011233223 33445566666
Q ss_pred CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
++++|++++++.++. .|+ +..|..-.+.+-+.|++.+|.+.++.....+ .-|-..=+-.+..+.+.|++++|.+++
T Consensus 209 ~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 209 DYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred CHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 777777777766665 333 4556666666666677777777766666654 345555555566666667777777666
Q ss_pred HHHHHCCCCCCHhhH--------HHHHHHHHcCCCHHHHHHHHHHh
Q 006281 494 HNMLEKGVAPDATTY--------TSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
......+..|....+ .-...+|.+.|++..|++.|..+
T Consensus 286 ~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 286 SLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 666554433322111 22345566666666666665544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.7e-07 Score=91.57 Aligned_cols=563 Identities=10% Similarity=-0.042 Sum_probs=299.7
Q ss_pred hhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHH
Q 006281 59 YLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKA 138 (652)
Q Consensus 59 ~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a 138 (652)
+.+.+...|+..|-...+... .=...|..+-+.|....+...|..-|+...+.+ ..+......+.+.|++..+++.|
T Consensus 469 ~~rK~~~~al~ali~alrld~--~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a 545 (1238)
T KOG1127|consen 469 CMRKNSALALHALIRALRLDV--SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEA 545 (1238)
T ss_pred HhhhhHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHH
Confidence 334455556665555533221 112457777777777778888888888888776 56777788888999999999998
Q ss_pred HHHHHHHHhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHh
Q 006281 139 FSVFNEVKFNC-EDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRK 217 (652)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 217 (652)
..+.-...+.. ...-..-|-.+.-.|.+.++...|+.-|+...+.++ -|...|..+..+|.+.|++..|+++|.+...
T Consensus 546 ~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 546 FEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred HHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 88833322211 001112233344456677888888888888777643 3777888888888888888888888888876
Q ss_pred ccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-----
Q 006281 218 RENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFKLMGSVFEREVVLKK----- 286 (652)
Q Consensus 218 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~----- 286 (652)
. .|.+.....-..-.-+..|.+.+|+..++.+... +..--..++-.+...+...|-..++...++.
T Consensus 625 L---rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f 701 (1238)
T KOG1127|consen 625 L---RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESF 701 (1238)
T ss_pred c---CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 6 5555444433444556778888888887776432 1111122333333333333332233333322
Q ss_pred --HHhcCCCCChhhHHHHHHH-----------------------HHccCCH---H---HHHHHHHHHHcCCCCC-CHHHH
Q 006281 287 --KRKLGVAPRTNDYREFILG-----------------------LIVERRI---C---EAKELGEVIVSGKFTI-DDDVL 334 (652)
Q Consensus 287 --~~~~~~~p~~~~~~~ll~~-----------------------~~~~~~~---~---~a~~~~~~~~~~~~~~-~~~~~ 334 (652)
...+....+...+..+-.+ +-..+.. + .+.+.+-.-. .... ....|
T Consensus 702 ~~~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hl--sl~~~~~~Wy 779 (1238)
T KOG1127|consen 702 IVSLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHL--SLAIHMYPWY 779 (1238)
T ss_pred HHHHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHH--HHhhccchHH
Confidence 2222111111111111111 1111111 0 0000000000 0001 11224
Q ss_pred HHHHHHHh------cC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 006281 335 NALIGSVS------SI--DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (652)
Q Consensus 335 ~~l~~~~~------~~--~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (652)
|..++++. .+ +...|+..++..++..- -+..+|+.|- .....|++.-+...|-+-....+. ...+|..+
T Consensus 780 NLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLG-Vlsg~gnva~aQHCfIks~~sep~-~~~~W~Nl 856 (1238)
T KOG1127|consen 780 NLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALG-VLSGIGNVACAQHCFIKSRFSEPT-CHCQWLNL 856 (1238)
T ss_pred HHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHH-Hhhccchhhhhhhhhhhhhhcccc-chhheecc
Confidence 55554443 11 33355555555544321 2444555443 334446666666666555544333 55677777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH----cCCCCCHHHHHHHHHHHHh
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA----SGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~~~ 482 (652)
.-.+.+..+++.|...|...+...+. +...|-.........|+.-++..+|..-.+ .|-.++..-|-....-...
T Consensus 857 gvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~ 935 (1238)
T KOG1127|consen 857 GVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQ 935 (1238)
T ss_pred ceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHh
Confidence 77777788888888888877765322 445555554445566777777777765221 1323444444444444455
Q ss_pred cCCHHHHHHHHHH----------HHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCccHH----HHHHHH
Q 006281 483 VGEIEGALRLFHN----------MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VMLARS----ILSTFM 547 (652)
Q Consensus 483 ~g~~~~A~~~~~~----------m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~----~~~~l~ 547 (652)
.|+.++-+...+. ... |..-+...|.......-+.+.+..|.++..+.+..= ...+.. .-..+.
T Consensus 936 Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~g 1014 (1238)
T KOG1127|consen 936 NGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAG 1014 (1238)
T ss_pred ccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh
Confidence 5655543333322 222 233355666666666666777777777666543210 111222 233455
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCCc
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFASLSSSSYPE 625 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 625 (652)
+.++..|.++.|...+....... +..+ ....-+..-.|+++++.+.++++.....+. ..++...++......|..+
T Consensus 1015 RL~lslgefe~A~~a~~~~~~ev-dEdi-~gt~l~lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~ 1092 (1238)
T KOG1127|consen 1015 RLELSLGEFESAKKASWKEWMEV-DEDI-RGTDLTLFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKN 1092 (1238)
T ss_pred hhhhhhcchhhHhhhhcccchhH-HHHH-hhhhHHHHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccch
Confidence 56667777777666554433210 0001 011111244678888888888887654332 2344455666666777778
Q ss_pred hHHHHHHHHHHc
Q 006281 626 PILLLLHALQEK 637 (652)
Q Consensus 626 ~a~~~~~~~~~~ 637 (652)
.|.+.+-+....
T Consensus 1093 ~A~~lLfe~~~l 1104 (1238)
T KOG1127|consen 1093 DAQFLLFEVKSL 1104 (1238)
T ss_pred HHHHHHHHHHHh
Confidence 887777666554
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.8e-08 Score=87.24 Aligned_cols=317 Identities=10% Similarity=0.021 Sum_probs=175.3
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHH
Q 006281 157 CNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGF 236 (652)
Q Consensus 157 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 236 (652)
+++.+.-+.+..+++.|++++....++.. .+....+.+..+|....++..|...++++... .|.......--...+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p-~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql---~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSP-RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL---HPELEQYRLYQAQSL 88 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ChHHHHHHHHHHHHH
Confidence 44445555555556666666555544421 13444455555555566666666666666544 232222111223445
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE--EFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICE 314 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~ 314 (652)
.+.+.+..|+++...|.+. |+...-..-+. .....+++..+..++++....| +..+.+...-...+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence 5667777777777776653 23222222222 2234566666777666654322 12222222223456788888
Q ss_pred HHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChHHHHHHHHH
Q 006281 315 AKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST----LSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 315 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
|.+-|....+-+--.....||..+..|++++...|++...+++++|++..+.. ....+++ ...|+. ..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~~---- 234 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---LV---- 234 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---HH----
Confidence 88888777766555566778888888999999999999999988876422111 0000000 000000 00
Q ss_pred HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 006281 391 LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKG-LDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (652)
Q Consensus 391 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 469 (652)
|...+ -...+|.-...+.+.|+++.|.+.+-+|.-+. ...|++|...+.-. --.+++.+..+-+.-+...+ +-.
T Consensus 235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-PfP 309 (459)
T KOG4340|consen 235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PFP 309 (459)
T ss_pred HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CCC
Confidence 00000 11234444455667888888888888775332 23466666544322 22355666666666666654 455
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
..||..++-.||+..-++.|..++.+-
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 678888888888888888887777653
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.7e-08 Score=85.73 Aligned_cols=203 Identities=11% Similarity=0.006 Sum_probs=159.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
+...+.-.|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|+...... +.+..+.|....-+|
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC 114 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence 4556777888889999999999988887433 55678888888889999999999998888775 566777888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
.+|++++|...|++....-.-| -..+|..+.-+..+.|+++.|...|++.++.++. .+.....+.....+.|++..|.
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar 193 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR 193 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence 8899999999998888652222 2457777877888889999999999998888876 5556677888888889999999
Q ss_pred HHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 561 KLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 561 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.+++..... +...++....+.+-...|+.+.|-+.=.++....|...
T Consensus 194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~s~ 241 (250)
T COG3063 194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPYSE 241 (250)
T ss_pred HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH
Confidence 888888773 34555666667777788888888888888888777764
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.6e-06 Score=84.52 Aligned_cols=121 Identities=10% Similarity=0.093 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCCh
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGP 154 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 154 (652)
+...|..+.+.|.+.++.+-|.--+..|.... .+-+...-..+.......|..++|..+|.+-++.
T Consensus 756 S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR~------ 829 (1416)
T KOG3617|consen 756 SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKRY------ 829 (1416)
T ss_pred hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHHH------
Confidence 55667777777777777766655555443221 0111122222333334557777777777776542
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHH
Q 006281 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215 (652)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 215 (652)
..|=..|-..|.+++|.++-+.--.-.+ ..||.....-+-..+|.+.|++.|++.
T Consensus 830 ---DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~ 884 (1416)
T KOG3617|consen 830 ---DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKA 884 (1416)
T ss_pred ---HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhc
Confidence 2333445556777777766554322222 234444444455566777777766644
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-08 Score=101.23 Aligned_cols=234 Identities=17% Similarity=0.145 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHhcCChhhHHHHHHHHHHc-----C--CC
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRK-----GL-DPDVSF-YNSLMEACCREDLLRPAKKLWDQMFAS-----G--CS 467 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~-~p~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~ 467 (652)
+...+...|...|+++.|..+++...+. |. .|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 4444666666666666666666655433 21 122222 233555667777777777777776642 2 11
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC-CCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CC
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEK-----GVA-PDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHD---VM 537 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~~-p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~ 537 (652)
--..+++.|..+|.+.|++++|..++++..+- |.. |.. ..++.++..|+..+++++|..++++.++.- +.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 12345666667777888887777777665531 111 111 234556666777888888888887665421 22
Q ss_pred c----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---------CCCchhHHHHHHHHhccccHHHHHHHHHHHHh---
Q 006281 538 L----ARSILSTFMISLCRRGHFLVATKLLRGLSSD---------LGHSDSHVILLKSLADAREVEMAIEHIKWIQE--- 601 (652)
Q Consensus 538 ~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 601 (652)
+ -..++..|...|...|++++|.++++++... .....++..++..|.+.+++.+|.+++.+...
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 2 2456888888888888888888888877541 11123455788888888888877777766443
Q ss_pred -cCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 602 -SSPTML--QEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 602 -~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.+|+.+ ...|..|+..|.+.|++++|.++.+.+.
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 234332 3445568888999999999998887765
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-08 Score=95.78 Aligned_cols=219 Identities=11% Similarity=0.000 Sum_probs=157.7
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 413 SGRLREAYGVIQEMKRKG-LDPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~-~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
.+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...|...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 356778888888887543 2222 3457777888999999999999999999875 66789999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...|++.++.... +..+|..+..++...|++++|.+.|++.++.++. ++. .......+...+++++|.+.+++....
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~ 194 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DPY-RALWLYLAESKLDPKQAKENLKQRYEK 194 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence 9999999976433 4677888888899999999999999999988765 331 222223345678899999999765442
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHH-------hcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQ-------ESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
. +++.|. ........|+...+ +.++.+. +..|.. ...|..++..+...|++++|...+++..+..+
T Consensus 195 ~-~~~~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~-~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~ 267 (296)
T PRK11189 195 L-DKEQWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERL-CETYFYLAKYYLSLGDLDEAAALFKLALANNV 267 (296)
T ss_pred C-CccccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 1 122222 23333445555443 2344433 223333 23455599999999999999999998887643
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1e-08 Score=101.22 Aligned_cols=236 Identities=16% Similarity=0.151 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-----CC-CcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN-----DY-FTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRK-----GL- 431 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~-----~~- 431 (652)
..+...+...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... |-
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 456666788889999999999988877653 21 12322 3344677889999999999999988653 21
Q ss_pred CCC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHc-----C-CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 006281 432 DPD-VSFYNSLMEACCREDLLRPAKKLWDQMFAS-----G-CSGNL-KTYNILISKFSEVGEIEGALRLFHNMLEK---G 500 (652)
Q Consensus 432 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~ 500 (652)
.|. ..+++.|..+|.+.|++++|...+++..+- | ..|.+ ..++.+...|...+++++|..+++...+. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 222 346777888899999999988888776542 1 12222 34667777888999999999999877642 1
Q ss_pred CCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC----C---CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 501 VAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD----V---MLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 501 ~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
+.++ ..+++.|...|...|++++|.++|++++... . .-....++.+...|.+.+++.+|.++|.+...
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 2222 3578889999999999999999999987632 1 11244578899999999999999998886532
Q ss_pred -------CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 569 -------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 569 -------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.|....++..|+..|...|++++|+++.+.+.
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 22333467789999999999999999998876
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.4e-06 Score=89.27 Aligned_cols=506 Identities=11% Similarity=-0.057 Sum_probs=240.7
Q ss_pred hhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 006281 100 INAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDE 179 (652)
Q Consensus 100 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 179 (652)
...+...|-+..+.. +.-...|..|-..|+...+...|.+.|+...+.... +...+..+...|++..+++.|..+.-.
T Consensus 474 ~~~al~ali~alrld-~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 474 SALALHALIRALRLD-VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHHHHHHHHhcc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 444444444444433 122335666666666666777777777777655322 556677777888888888887777333
Q ss_pred HHhCCC-ccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC
Q 006281 180 MSHRGV-EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK 258 (652)
Q Consensus 180 m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 258 (652)
.-+... ..-...|..+--.|.+.++...|..-|+...+. .|.|...|..+..+|.++|++..|.++|.+.... .
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~---dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r 626 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT---DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R 626 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcC---CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence 222210 001111222222345567777777777777755 7778888888888888888888888888776653 3
Q ss_pred cCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHc------
Q 006281 259 PDFIAYRI--VAEEFKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLIVERRICEAKELGEVIVS------ 324 (652)
Q Consensus 259 p~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------ 324 (652)
|+. +|.. ....-+..|.+.+++..+...... +..--..++..+...+...|-...+.++++.-++
T Consensus 627 P~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l 705 (1238)
T KOG1127|consen 627 PLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSL 705 (1238)
T ss_pred cHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 432 2222 222345567777777777665432 1111112333333333333333333333333221
Q ss_pred -CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---H---HHHHHHHHHHhCCCC
Q 006281 325 -GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---D---ELVEVYKVLSANDYF 397 (652)
Q Consensus 325 -~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~~~~~ 397 (652)
.....+...|-.+ ..|..+|.+.. .+ .|+......+..-..+.+.. + .+.+.+-.-.. ..
T Consensus 706 ~h~~~~~~~~Wi~a---------sdac~~f~q~e-~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~ 772 (1238)
T KOG1127|consen 706 IHSLQSDRLQWIVA---------SDACYIFSQEE-PS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LA 772 (1238)
T ss_pred HHhhhhhHHHHHHH---------hHHHHHHHHhc-cc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--Hh
Confidence 1111111111111 11222222222 11 22222222222212222211 1 11111111111 11
Q ss_pred cCHHHHHHHHHHHHh----c----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC
Q 006281 398 TDMESYNVMVSFLCT----S----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN 469 (652)
Q Consensus 398 ~~~~~~~~li~~~~~----~----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 469 (652)
.+...|..++..|.+ . .+...|+..+.+..+..-. +..+|+.|.-. ...|++.-+.-.|-.-.... +..
T Consensus 773 ~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~an-n~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~ 849 (1238)
T KOG1127|consen 773 IHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLCAN-NEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTC 849 (1238)
T ss_pred hccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHhhc-cHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccc
Confidence 123344444443333 1 1233566666665554322 55566655443 44455555555555544443 445
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh--h--hCCCCccHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS--V--NHDVMLARSILST 545 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~--~--~~~~~~~~~~~~~ 545 (652)
..+|..+.-.+.+..+++-|...|.......+. +...|..........|+.-+...+|... . ..+-.+....|.+
T Consensus 850 ~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c 928 (1238)
T KOG1127|consen 850 HCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLC 928 (1238)
T ss_pred hhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHH
Confidence 556666666666777777777777766654222 4445544444444556666666666541 1 1222233333333
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh-----------hCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh-----cCCCCcHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLS-----------SDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE-----SSPTMLQE 609 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~ 609 (652)
....-...|+.++-+...+++. ..|....+|.+.+......+.++.|.+...++.. .+.+..++
T Consensus 929 ~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynv 1008 (1238)
T KOG1127|consen 929 ATEIHLQNGNIEESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNV 1008 (1238)
T ss_pred HHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 3333444555444333333221 1344445555555555556666655555444321 11122222
Q ss_pred HHHHHHHHhhcCCCCchHHHH
Q 006281 610 ISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~ 630 (652)
.-..++..++..|.++.|...
T Consensus 1009 ak~~~gRL~lslgefe~A~~a 1029 (1238)
T KOG1127|consen 1009 AKPDAGRLELSLGEFESAKKA 1029 (1238)
T ss_pred hhhhhhhhhhhhcchhhHhhh
Confidence 333355556666666655443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.8e-07 Score=81.32 Aligned_cols=298 Identities=13% Similarity=0.083 Sum_probs=186.2
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLS-NLSKNLCKRNKSD 382 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l~~~~~~~~~~~ 382 (652)
..+...|++..|+.-|...++..+..-...|...-.++..|...-|+.-+...++. +||-..-. .-...+.+.|.++
T Consensus 46 k~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele 123 (504)
T KOG0624|consen 46 KELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELE 123 (504)
T ss_pred HHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHH
Confidence 33444455555555555554442222222232223334444444444444444432 33321111 0112356777777
Q ss_pred HHHHHHHHHHhCCCCcCH--H------------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 383 ELVEVYKVLSANDYFTDM--E------------SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~--~------------~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 448 (652)
.|..=|+.+.+....... . .....+..+...|+...|+.....+++..+ -|...|..-..+|...
T Consensus 124 ~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i~~ 202 (504)
T KOG0624|consen 124 QAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYIAE 202 (504)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHHhc
Confidence 777777777765432111 1 112233445566888888888888887643 3677777778888888
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhh----HHHH---------HHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATT----YTSL---------LEGL 515 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~----~~~l---------~~~~ 515 (652)
|++..|+.=+....+.. ..+..++--+-..+...|+.+.++...++.++ +.||... |..+ +...
T Consensus 203 ~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~K~les~e~~ 279 (504)
T KOG0624|consen 203 GEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKKVVKSLESAEQA 279 (504)
T ss_pred CcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 88888887777776654 45556666667777788888888888888774 3555432 1111 1223
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
...+++.++.+..+..++..+... ...+..+-.++...|++.+|++...++.+ +|.+..++.--+.+|.-...++.
T Consensus 280 ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~ 359 (504)
T KOG0624|consen 280 IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDD 359 (504)
T ss_pred HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHH
Confidence 456778888888888777765522 23355566677788899999999998887 66667888888899998899999
Q ss_pred HHHHHHHHHhcCCCCc
Q 006281 592 AIEHIKWIQESSPTML 607 (652)
Q Consensus 592 A~~~~~~~~~~~~~~~ 607 (652)
|+.-|+++.+.++++.
T Consensus 360 AI~dye~A~e~n~sn~ 375 (504)
T KOG0624|consen 360 AIHDYEKALELNESNT 375 (504)
T ss_pred HHHHHHHHHhcCcccH
Confidence 9999999999888764
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.6e-07 Score=78.16 Aligned_cols=396 Identities=14% Similarity=0.101 Sum_probs=220.7
Q ss_pred CcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHH-
Q 006281 188 STIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRI- 266 (652)
Q Consensus 188 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~- 266 (652)
..--+.+++..+.+..+++.|++++....+. .|.+....+.|..+|....++..|-..++++... .|...-|..
T Consensus 9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY 83 (459)
T KOG4340|consen 9 PEGEFTAVVYRLIRDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLY 83 (459)
T ss_pred CCCchHHHHHHHHHHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHH
Confidence 3344566676777888888888888877766 5555666677788888888888888888887664 455554543
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 006281 267 VAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (652)
Q Consensus 267 ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (652)
-...+.+.+.+..|+.+...|... |+...-..-+.+.+ .|+.+|+
T Consensus 84 ~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAI--------------------------------kYse~Dl 128 (459)
T KOG4340|consen 84 QAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAI--------------------------------KYSEGDL 128 (459)
T ss_pred HHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHH--------------------------------hcccccC
Confidence 234566677777777777666442 11111111111111 1333444
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
..+..+.++....| +..+.+...-...+.|+++.|.+-|+...+-+-......|+..+ ++.+.|+++.|++...++
T Consensus 129 ~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 129 PGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEI 204 (459)
T ss_pred cchHHHHHhccCCC---ccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHH
Confidence 44444444443222 22222222223446777777777777776654333445565544 344557777788777777
Q ss_pred HHcCCCC-------------CH---------------HHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHH
Q 006281 427 KRKGLDP-------------DV---------------SFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILI 477 (652)
Q Consensus 427 ~~~~~~p-------------~~---------------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~ 477 (652)
+++|++- |+ ..+|.-...+.+.|+++.|.+.+..|.-. .-..|+.|...+.
T Consensus 205 ieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~A 284 (459)
T KOG4340|consen 205 IERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQA 284 (459)
T ss_pred HHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHH
Confidence 7766431 11 11222223345778888888888777532 1234555554443
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHh-cCC
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCR-RGH 555 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~-~g~ 555 (652)
-.- ..+++.+..+-++-+.+...- ...||..++-.||+..-++.|-.++-+-...-.. .++..|+ |++++.- .-.
T Consensus 285 l~n-~~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~ 361 (459)
T KOG4340|consen 285 LMN-MDARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTA 361 (459)
T ss_pred Hhc-ccCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCC
Confidence 222 234566666666666655443 4568888888999988888888877653222211 2233333 4455443 345
Q ss_pred HHHHHHHHHHhhhCCCCchhHH-HHHHHH-----hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 556 FLVATKLLRGLSSDLGHSDSHV-ILLKSL-----ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~-~l~~~~-----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
.++|.+-++.+.... ..-.. ..+... .......+|++-+++.++.. -+++ ...++.|.+..++.-+++
T Consensus 362 pEea~KKL~~La~~l--~~kLRklAi~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y---LPVl-Ma~AkiyW~~~Dy~~vEk 435 (459)
T KOG4340|consen 362 PEEAFKKLDGLAGML--TEKLRKLAIQVQEARHNRDDEAIRKAVNEYDETLEKY---LPVL-MAQAKIYWNLEDYPMVEK 435 (459)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH---HHHH-HHHHHhhccccccHHHHH
Confidence 677776665553310 00000 111111 11112334455555555543 1233 337788889999999999
Q ss_pred HHHHHHH
Q 006281 630 LLHALQE 636 (652)
Q Consensus 630 ~~~~~~~ 636 (652)
.|+.-.+
T Consensus 436 ~Fr~Sve 442 (459)
T KOG4340|consen 436 IFRKSVE 442 (459)
T ss_pred HHHHHHh
Confidence 8876443
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.5e-06 Score=85.96 Aligned_cols=168 Identities=14% Similarity=0.198 Sum_probs=81.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006281 408 SFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487 (652)
Q Consensus 408 ~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (652)
.+-.....+.+|+.+++.++..... .--|..+..-|+..|+++.|.++|.+.- .++--|..|.+.|+|+
T Consensus 740 eaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~ 808 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWE 808 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHH
Confidence 3444455566666666655544221 2234445555666666666666654332 2334455566666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 488 GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 488 ~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.|.++-++.. |.......|..-..-+-+.|++.+|.++|-.+ + .|+. .+..|-++|..++.+++.++-.
T Consensus 809 da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~~-----aiqmydk~~~~ddmirlv~k~h 877 (1636)
T KOG3616|consen 809 DAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPDK-----AIQMYDKHGLDDDMIRLVEKHH 877 (1636)
T ss_pred HHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-CchH-----HHHHHHhhCcchHHHHHHHHhC
Confidence 6665554443 33333444444444455556666665555321 1 1221 2345555555555555554432
Q ss_pred hCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 568 SDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 568 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
-+ ...++...++.-+...|+...|.+.+-+
T Consensus 878 ~d-~l~dt~~~f~~e~e~~g~lkaae~~fle 907 (1636)
T KOG3616|consen 878 GD-HLHDTHKHFAKELEAEGDLKAAEEHFLE 907 (1636)
T ss_pred hh-hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence 21 1122334455555555555555555433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=98.09 Aligned_cols=218 Identities=14% Similarity=0.104 Sum_probs=105.9
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.+.|++.+|.-.|+...+.... +...|..|.......++-..|+..+.+..+.. +.|......|.-.|...|.-.+|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHH
Confidence 3444444444444444444222 33444444444444444444444444444443 334444444444444444444455
Q ss_pred HHHHHHHHCCCCCCHhhHHHHH-----------HHHHcCCCHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHH
Q 006281 491 RLFHNMLEKGVAPDATTYTSLL-----------EGLCQETNLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 491 ~~~~~m~~~~~~p~~~~~~~l~-----------~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
..++.-+...++ |..+. ..+..........++|-++.... ..+|+.+...|.-.|.-.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 444444322100 00000 01111112333344444433322 23455566666666666666666
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
|+..|+.+.. +|.+...|+.|+..+....+.++|++.|.++++..|....+.|| |+-.|.-.|.+++|.+.|=.+..
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyN-lgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYN-LGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehh-hhhhhhhhhhHHHHHHHHHHHHH
Confidence 6666666555 45555556666666666666666666666666666666555555 55556666666666665554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5e-05 Score=85.49 Aligned_cols=416 Identities=12% Similarity=-0.001 Sum_probs=243.4
Q ss_pred hhhHHHHHHHHHhCCCc--c-C----cccHHHHHHHHHhc----CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc
Q 006281 170 IDNALKMFDEMSHRGVE--F-S----TIGFGVFIWKFCEN----AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~--~-~----~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (652)
.+.+..+++++...|+- + + .+.|..++.-+.+. .+.++...+ .......+..
T Consensus 291 ~~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l~~~~~~~~~~l-----------------h~raa~~~~~ 353 (903)
T PRK04841 291 EENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRCQWELAQELPEL-----------------HRAAAEAWLA 353 (903)
T ss_pred CCcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHHHhcCchHHHHH-----------------HHHHHHHHHH
Confidence 34456777777777641 1 1 24566666554432 112222222 2223444666
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHH
Q 006281 239 GKRVEEAFKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKE 317 (652)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 317 (652)
.|++.+|.......... +-. .............|+++.+...++.+.......+..........+...|+++++..
T Consensus 354 ~g~~~~Al~~a~~a~d~---~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~ 430 (903)
T PRK04841 354 QGFPSEAIHHALAAGDA---QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNT 430 (903)
T ss_pred CCCHHHHHHHHHHCCCH---HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHH
Confidence 77777776654443211 000 11111223344567777777776654221111122222333445566789999888
Q ss_pred HHHHHHcCCCCC----C--HH-HHHHHH--HHHhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHH
Q 006281 318 LGEVIVSGKFTI----D--DD-VLNALI--GSVSSIDPRSAIVFFNFMIEKGRVPTL----STLSNLSKNLCKRNKSDEL 384 (652)
Q Consensus 318 ~~~~~~~~~~~~----~--~~-~~~~l~--~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a 384 (652)
.++.....-... + .. ....+. .....|++++|...+++..+.-...+. ...+.+...+...|+++.|
T Consensus 431 ~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A 510 (903)
T PRK04841 431 LLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARA 510 (903)
T ss_pred HHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 887765431111 1 11 111222 224568999999999887763222221 2344555667789999999
Q ss_pred HHHHHHHHhC----CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChh
Q 006281 385 VEVYKVLSAN----DY-FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLD--P-DVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 385 ~~~~~~~~~~----~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~--p-~~~~~~~ll~~~~~~g~~~ 452 (652)
...+.+.... +. .....++..+...+...|++++|...+++.... +.. + ....+..+...+...|+++
T Consensus 511 ~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~ 590 (903)
T PRK04841 511 LAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLD 590 (903)
T ss_pred HHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHH
Confidence 9998887642 11 111234556667788899999999998876543 211 1 1233445556677789999
Q ss_pred hHHHHHHHHHHc--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhH-----HHHHHHHHcCCCHH
Q 006281 453 PAKKLWDQMFAS--GCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTY-----TSLLEGLCQETNLQ 522 (652)
Q Consensus 453 ~a~~~~~~~~~~--~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~-----~~l~~~~~~~g~~~ 522 (652)
+|...+++.... ...+ ....+..+...+...|++++|.+.+++....... .....+ ...+..+...|+.+
T Consensus 591 ~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 670 (903)
T PRK04841 591 EAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKE 670 (903)
T ss_pred HHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHH
Confidence 999999887653 1112 2344555667788899999999999888642111 011111 11223445688999
Q ss_pred HHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----CchhHHHHHHHHhccccHHHH
Q 006281 523 AAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A 592 (652)
.|.+++........... ...+..+..++...|++++|...++++... .+ .......++.++...|+.++|
T Consensus 671 ~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A 750 (903)
T PRK04841 671 AAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEA 750 (903)
T ss_pred HHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 99999876554222111 112456777888999999999999887541 11 122455788888999999999
Q ss_pred HHHHHHHHhcCCC
Q 006281 593 IEHIKWIQESSPT 605 (652)
Q Consensus 593 ~~~~~~~~~~~~~ 605 (652)
...+.++.+....
T Consensus 751 ~~~L~~Al~la~~ 763 (903)
T PRK04841 751 QRVLLEALKLANR 763 (903)
T ss_pred HHHHHHHHHHhCc
Confidence 9999999886543
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.7e-07 Score=87.23 Aligned_cols=222 Identities=10% Similarity=0.015 Sum_probs=139.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-
Q 006281 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI- 486 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~- 486 (652)
.+...++.++|+.+..++++.... +..+|+.--.++...| ++++++..++.+.+.+ +.+..+|+.....+.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~ 123 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDA 123 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchh
Confidence 334455666777777776665222 2334444444445555 4577777777777654 44555566554445455542
Q ss_pred -HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc---CCH----HH
Q 006281 487 -EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR---GHF----LV 558 (652)
Q Consensus 487 -~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~----~~ 558 (652)
++++.+++.+++...+ +..+|.....++...|+++++++.++++++.++. +...|+....++.+. |.. ++
T Consensus 124 ~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 124 ANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 5667777777766544 6667777777777777788888888888777776 666666666555544 222 45
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-----------
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS----------- 622 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------- 622 (652)
++++..++.. +|.+.++|.-+..++.. .++..+|.+...++.+.+|.. ......|++.|+...
T Consensus 202 el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s-~~al~~l~d~~~~~~~~~~~~~~~~~ 280 (320)
T PLN02789 202 ELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNH-VFALSDLLDLLCEGLQPTAEFRDTVD 280 (320)
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCc-HHHHHHHHHHHHhhhccchhhhhhhh
Confidence 6666655444 77778888877777766 244566777777777766665 345555778776532
Q ss_pred -------CCchHHHHHHHHH
Q 006281 623 -------YPEPILLLLHALQ 635 (652)
Q Consensus 623 -------~~~~a~~~~~~~~ 635 (652)
..++|.++++.+.
T Consensus 281 ~~~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 281 TLAEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccccHHHHHHHHHHHH
Confidence 2356777777773
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.03 E-value=3.2e-06 Score=81.16 Aligned_cols=228 Identities=12% Similarity=0.053 Sum_probs=148.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHH-------HHHHHHh
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNV-------MVSFLCT 412 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------li~~~~~ 412 (652)
++.+.++..+++-+....+.. -+..-++....+|...|.+..+...-....+.|.. ...-|+. +..+|.+
T Consensus 234 aykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k 310 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTK 310 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhh
Confidence 355668888888888877665 35555666777888888888877777766665533 2222332 3346666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHH
Q 006281 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~ 491 (652)
.++++.|+..|++.......|+.. .+....+++....+...-. .|.. .-...=...+.+.|++..|+.
T Consensus 311 ~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~~--~pe~A~e~r~kGne~Fk~gdy~~Av~ 379 (539)
T KOG0548|consen 311 REDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAYI--NPEKAEEEREKGNEAFKKGDYPEAVK 379 (539)
T ss_pred HHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHhh--ChhHHHHHHHHHHHHHhccCHHHHHH
Confidence 788999999999877665444322 2233344444444444332 2322 111222556778889999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.|.+++..... |...|....-+|.+.|.+..|+.-.+.+++.++. ....|..=+.++....++++|.+.|.+..+ +|
T Consensus 380 ~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~-~~kgy~RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 380 HYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN-FIKAYLRKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 99998877533 7778888888888999999988888888887664 444555556666667788888888888877 44
Q ss_pred CCchhHHHHHHHH
Q 006281 571 GHSDSHVILLKSL 583 (652)
Q Consensus 571 ~~~~~~~~l~~~~ 583 (652)
.+......+..++
T Consensus 458 ~~~e~~~~~~rc~ 470 (539)
T KOG0548|consen 458 SNAEAIDGYRRCV 470 (539)
T ss_pred hhHHHHHHHHHHH
Confidence 4433333333333
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-08 Score=92.41 Aligned_cols=252 Identities=12% Similarity=0.047 Sum_probs=190.7
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
+.+.|++.+|.-.|+....+++. +...|-.|.......++-..|+..+++..+.... |......|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHH
Confidence 56788899999999988887665 7788999999999999989999999998887543 667778888888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006281 455 KKLWDQMFASGCSGNLKTYNILI-------SKFSEVGEIEGALRLFHNML-EKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~-------~~~~~~g~~~~A~~~~~~m~-~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (652)
...++.-+... +|-...-..=. ..+..........++|-++. +.+.++|......|.-.|.-.|++++|+.
T Consensus 373 l~~L~~Wi~~~-p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiD 451 (579)
T KOG1125|consen 373 LKMLDKWIRNK-PKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVD 451 (579)
T ss_pred HHHHHHHHHhC-ccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHH
Confidence 99998887643 11100000000 11112223344555555554 45555788888888888889999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.|+.++...+. |..+|+.|.-.++...+.++|+..+.++.+ .|.-..++..++-+|...|.+++|.++|-.++...+.
T Consensus 452 cf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 452 CFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred HHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 99999988887 888999999999999999999999999998 7888888999999999999999999999888764332
Q ss_pred ---------CcHHHHHHHHHHhhcCCCCchHHHH
Q 006281 606 ---------MLQEISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 606 ---------~~~~~~~~l~~~~~~~g~~~~a~~~ 630 (652)
....+|..|-.++...++.+-+.+.
T Consensus 531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 531 SRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred ccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 2245676666666666666644433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-06 Score=84.64 Aligned_cols=93 Identities=14% Similarity=0.116 Sum_probs=52.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCH--HHHHHHHHHH
Q 006281 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGNL--KTYNILISKF 480 (652)
Q Consensus 404 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~~~l~~~~ 480 (652)
..+...+...|++++|...+++..+.... +...+..+...+...|++++|...+++.....- .|+. ..|..+...+
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~ 196 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY 196 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence 34445556666666666666666655322 344555555666666666666666666554321 1221 2344555566
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006281 481 SEVGEIEGALRLFHNML 497 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~ 497 (652)
...|++++|..++++..
T Consensus 197 ~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 197 LERGDYEAALAIYDTHI 213 (355)
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 66666666666666654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.5e-06 Score=84.46 Aligned_cols=260 Identities=10% Similarity=0.018 Sum_probs=168.2
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCRE 448 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~ 448 (652)
.+...|+++.|.+++++..+..+. +...+.. ...+.. .+..+.+.+.+... ....|+ ......+...+...
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~a~~~~~~ 127 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDYPR-DLLALKL-HLGAFGLGDFSGMRDHVARVLPLW--APENPDYWYLLGMLAFGLEEA 127 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHH-hHHHHHhcccccCchhHHHHHhcc--CcCCCCcHHHHHHHHHHHHHc
Confidence 456778999999999988876443 4444442 222222 34455555555441 122333 33445566778899
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH--hhHHHHHHHHHcCCCHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDA--TTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~--~~~~~l~~~~~~~g~~~~a~ 525 (652)
|++++|.+.+++..+.. +.+...+..+..+|...|++++|...+++...... .|+. ..|..+...+...|++++|.
T Consensus 128 G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~ 206 (355)
T cd05804 128 GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAAL 206 (355)
T ss_pred CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999875 56677888999999999999999999999886532 2232 34557888899999999999
Q ss_pred HHHHHhhhCCCC-ccHHHH-H--HHHHHHHhcCCHHHHHHH---HHHhhhC-CCC--chhHHHHHHHHhccccHHHHHHH
Q 006281 526 EVFNKSVNHDVM-LARSIL-S--TFMISLCRRGHFLVATKL---LRGLSSD-LGH--SDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 526 ~~~~~~~~~~~~-~~~~~~-~--~l~~~~~~~g~~~~A~~~---~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
.+++++....+. +..... . .++..+...|....+.++ ....... +.. .......+.++...|+.++|...
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~ 286 (355)
T cd05804 207 AIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKL 286 (355)
T ss_pred HHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHH
Confidence 999998654431 122111 1 333444455644444443 2221111 111 12223677788899999999999
Q ss_pred HHHHHhcCCC---C-----cHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 596 IKWIQESSPT---M-----LQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 596 ~~~~~~~~~~---~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
++.+...... . ...+.-....++.+.|++++|.+.+......+
T Consensus 287 L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 287 LAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred HHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 9888663322 1 11111224445679999999999999887663
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.4e-05 Score=74.22 Aligned_cols=64 Identities=9% Similarity=0.160 Sum_probs=37.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhc
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKR 218 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 218 (652)
|+.+|+.|++-+-.. .++++...++++... .+-....|..-|..-.+..+++.+.++|.+...+
T Consensus 19 di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 19 DIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK 82 (656)
T ss_pred cHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 566666666655444 666666666666543 2223445555566666666666666666666554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.4e-05 Score=89.81 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=88.5
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhC----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHH-----H
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSAN----DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFY-----N 439 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~-----~ 439 (652)
.+...+...|++++|...+...... +.......+..+...+...|++++|...+.+........ ....+ .
T Consensus 578 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~ 657 (903)
T PRK04841 578 IRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADK 657 (903)
T ss_pred HHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHH
Confidence 3344455667777777776665432 111112234445556667777777777777664321100 00001 1
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HhhHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASGCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAPD-ATTYTSL 511 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p~-~~~~~~l 511 (652)
..+..+...|+.+.|.+.+........... ...+..+..++...|++++|...+++.... |..++ ..+...+
T Consensus 658 ~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~l 737 (903)
T PRK04841 658 VRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILL 737 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 112333456777777777665543211111 111344556667777888887777776542 22221 2345555
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
..++...|+.++|...+.++++..
T Consensus 738 a~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 738 NQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHh
Confidence 666777788888888877776643
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.98 E-value=7.6e-05 Score=77.10 Aligned_cols=323 Identities=14% Similarity=0.202 Sum_probs=194.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNS 159 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 159 (652)
.|+...+...+++...+-+.+.+++++++.-.. +.-+....+.||-...+. +.....+..+++..... -.
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa-------~~ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDA-------PD 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCc-------hh
Confidence 355556667778888888888888888776432 122233344444443333 34455556665543321 12
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHcc
Q 006281 160 LLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKG 239 (652)
Q Consensus 160 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 239 (652)
+...+..++-+++|..+|+...- +......++. ..+.++.|.++-++.. .+.+|..+..+-.+.
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~-----n~~A~~VLie---~i~~ldRA~efAe~~n--------~p~vWsqlakAQL~~ 1117 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDM-----NVSAIQVLIE---NIGSLDRAYEFAERCN--------EPAVWSQLAKAQLQG 1117 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcc-----cHHHHHHHHH---HhhhHHHHHHHHHhhC--------ChHHHHHHHHHHHhc
Confidence 34455566667888888776532 2223333332 3467777777666553 356788888888888
Q ss_pred CCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 006281 240 KRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELG 319 (652)
Q Consensus 240 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 319 (652)
|.+.+|.+-|-+. .|...|.-+++...+.|.+++-.+.+...++...+|... +.++-+|++.+++.+..++.
T Consensus 1118 ~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1118 GLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI 1189 (1666)
T ss_pred CchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh
Confidence 8888888877443 267788888888888888888888888777776666544 45777888887776655542
Q ss_pred HHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006281 320 EVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTD 399 (652)
Q Consensus 320 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 399 (652)
.-|+......+.+-|...+.++.|.-+|..
T Consensus 1190 -----------------------------------------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~--------- 1219 (1666)
T KOG0985|consen 1190 -----------------------------------------AGPNVANIQQVGDRCFEEKMYEAAKLLYSN--------- 1219 (1666)
T ss_pred -----------------------------------------cCCCchhHHHHhHHHhhhhhhHHHHHHHHH---------
Confidence 224444555555556666666666555543
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
+.-|..|...+...|+++.|.+.-++.. +..||..+-.+|...+.+.-|. |-..++.....-...++.-
T Consensus 1220 vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~ 1288 (1666)
T KOG0985|consen 1220 VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEY 1288 (1666)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHH
Confidence 2345566666666666666665544432 4556666666666555444322 2222222333445556666
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 006281 480 FSEVGEIEGALRLFHNML 497 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~ 497 (652)
|-..|-+++.+.+++...
T Consensus 1289 Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1289 YQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHhcCcHHHHHHHHHhhh
Confidence 666666666666666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.3e-06 Score=84.77 Aligned_cols=149 Identities=13% Similarity=0.066 Sum_probs=83.4
Q ss_pred cCHHhHHHHHH--HHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-C--------C
Q 006281 117 LDSSVYRFIIP--SLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-G--------V 185 (652)
Q Consensus 117 ~~~~~~~~li~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~--------~ 185 (652)
-|..|-..++. .|..-|+.+.|.+-.+.++ +..+|..+...|.+..+++-|.-.+..|... | .
T Consensus 724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q 797 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQ 797 (1416)
T ss_pred cCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHh
Confidence 45666666664 4667788998888887775 4578889999999988888887777666532 1 1
Q ss_pred ccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHH
Q 006281 186 EFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYR 265 (652)
Q Consensus 186 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 265 (652)
.|+ .+=..+.......|.+++|..++.+.++. ..|=..|-..|.+++|.++-+.=-+. . =..||.
T Consensus 798 ~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR~-----------DLlNKlyQs~g~w~eA~eiAE~~DRi--H-Lr~Tyy 862 (1416)
T KOG3617|consen 798 NGE-EDEAKVAVLAIELGMLEEALILYRQCKRY-----------DLLNKLYQSQGMWSEAFEIAETKDRI--H-LRNTYY 862 (1416)
T ss_pred CCc-chhhHHHHHHHHHhhHHHHHHHHHHHHHH-----------HHHHHHHHhcccHHHHHHHHhhccce--e-hhhhHH
Confidence 111 11111222234456666666666655543 11223344456666666655432111 1 112444
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 006281 266 IVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 266 ~ll~~~~~~g~~~~a~~~~~~ 286 (652)
.-...+-..++.+.|++.|++
T Consensus 863 ~yA~~Lear~Di~~AleyyEK 883 (1416)
T KOG3617|consen 863 NYAKYLEARRDIEAALEYYEK 883 (1416)
T ss_pred HHHHHHHhhccHHHHHHHHHh
Confidence 444445555566666666554
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.97 E-value=9.5e-07 Score=83.56 Aligned_cols=225 Identities=9% Similarity=0.047 Sum_probs=162.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh--
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL-- 451 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-- 451 (652)
+...++.+.|+.++.++.+..+. +..+|+.-..++...| ++++++..++++.+...+ +..+|+.....+.+.|+.
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~ 124 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAA 124 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhh
Confidence 44567788888888888876544 5556776666677777 578999999998887554 555676655555566653
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---CC----HHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE---TN----LQAA 524 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~----~~~a 524 (652)
+++...++.+.+.. +-|..+|+...-++...|+++++++.++++++.++. |...|+.....+.+. |. .++.
T Consensus 125 ~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 125 NKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 67788888888776 678888988888888889999999999999987665 666777666655544 22 2567
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhc----CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc------------
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRR----GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR------------ 587 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g------------ 587 (652)
+++.++++...+. +...|+.+...+... +...+|.+.+.+... .+.++.....|+..|....
T Consensus 203 l~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~ 281 (320)
T PLN02789 203 LKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDT 281 (320)
T ss_pred HHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence 8888788888876 788888888888773 345678888877665 4556666677888886532
Q ss_pred ------cHHHHHHHHHHHHhcCC
Q 006281 588 ------EVEMAIEHIKWIQESSP 604 (652)
Q Consensus 588 ------~~~~A~~~~~~~~~~~~ 604 (652)
..++|..+++.+.+.+|
T Consensus 282 ~~~~~~~~~~a~~~~~~l~~~d~ 304 (320)
T PLN02789 282 LAEELSDSTLAQAVCSELEVADP 304 (320)
T ss_pred cccccccHHHHHHHHHHHHhhCc
Confidence 23667777777754444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.5e-08 Score=92.96 Aligned_cols=228 Identities=15% Similarity=0.168 Sum_probs=140.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP-DVSFYNSLMEA 444 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~ll~~ 444 (652)
.....+.+++...|+.+.+. ..+.... .|.......+...+...++-+.++.-+++.......+ +..........
T Consensus 36 e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i 111 (290)
T PF04733_consen 36 ERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATI 111 (290)
T ss_dssp HHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHH
Confidence 33445566777788766543 3333332 4566565555554444345555555555444333222 22222233344
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCC
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETN 520 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~ 520 (652)
+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++.. .+.
T Consensus 112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH-HHHHHHHHHHHHHhCchh
Confidence 56678888888777542 45667777888888888888888888888854 3333 33444444332 346
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH-HHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV-EMAIEHIKW 598 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~ 598 (652)
+.+|.-+|+++.+. +.+++.+++.++.+....|++++|.+++.+... ++.++++...++.+....|+. +.+.+.+.+
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q 261 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ 261 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence 88888888886544 455778888888888888888888888888766 566666666777766677766 667778888
Q ss_pred HHhcCCCCc
Q 006281 599 IQESSPTML 607 (652)
Q Consensus 599 ~~~~~~~~~ 607 (652)
+....|..+
T Consensus 262 L~~~~p~h~ 270 (290)
T PF04733_consen 262 LKQSNPNHP 270 (290)
T ss_dssp CHHHTTTSH
T ss_pred HHHhCCCCh
Confidence 888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.5e-05 Score=75.71 Aligned_cols=538 Identities=12% Similarity=0.057 Sum_probs=270.7
Q ss_pred hhhhhhccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 55 VINPYLLTHHSLALGFFNWASQQPNFTHSPLSYHSILKSL--SLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 55 ~l~~~~~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
+.+.+-.+++..|+.-...+.++++..+ |..++.++ .+.|..++|..+++.....+. .|..+...+-.+|...
T Consensus 16 i~d~ld~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~ 90 (932)
T KOG2053|consen 16 IYDLLDSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDL 90 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHH
Confidence 4444445677888988888887765444 44555554 488999999988888777663 4888999999999999
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhc----------
Q 006281 133 KNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCEN---------- 202 (652)
Q Consensus 133 g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------- 202 (652)
+..++|..+|+..... .|+..-...+..+|++.+++.+-.+.--+|-+ +++-+.+.+-+++......
T Consensus 91 ~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~ 167 (932)
T KOG2053|consen 91 GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDP 167 (932)
T ss_pred hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccc
Confidence 9999999999999876 55667777888889998887765555444443 2333556665666554432
Q ss_pred CcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHH-HHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 203 AKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLD-ELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 203 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
--..-|.+.++.+.+..|......... .-.......|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..
T Consensus 168 i~l~LA~~m~~~~l~~~gk~~s~aE~~-Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~ 246 (932)
T KOG2053|consen 168 ILLALAEKMVQKLLEKKGKIESEAEII-LYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELF 246 (932)
T ss_pred hhHHHHHHHHHHHhccCCccchHHHHH-HHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHH
Confidence 113445666666666633222211111 12223445777888888873 3333323334444455666777777888777
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-C
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-G 360 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~ 360 (652)
++-.++...|.. . |...+.. +++.+.....+|-...++.. +..+...+...+.... .
T Consensus 247 ~l~~~Ll~k~~D--d--y~~~~~s------------v~klLe~~~~~~a~~~~s~~------~~l~~~~ek~~~~i~~~~ 304 (932)
T KOG2053|consen 247 ELSSRLLEKGND--D--YKIYTDS------------VFKLLELLNKEPAEAAHSLS------KSLDECIEKAQKNIGSKS 304 (932)
T ss_pred HHHHHHHHhCCc--c--hHHHHHH------------HHHHHHhcccccchhhhhhh------hhHHHHHHHHHHhhcccc
Confidence 777777665432 1 2222111 11111111111000000000 0001111111111111 0
Q ss_pred CCCCHHHHHHHHHHHHhcCChHHHHHHH-HHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH---
Q 006281 361 RVPTLSTLSNLSKNLCKRNKSDELVEVY-KVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS--- 436 (652)
Q Consensus 361 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--- 436 (652)
..|-...+.. ..-+-.-|+.+++...| ++.-.. ..|..=+..|...=..++-..++...... .++..
T Consensus 305 Rgp~LA~lel-~kr~~~~gd~ee~~~~y~~kfg~k------pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~ 375 (932)
T KOG2053|consen 305 RGPYLARLEL-DKRYKLIGDSEEMLSYYFKKFGDK------PCCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDE 375 (932)
T ss_pred cCcHHHHHHH-HHHhcccCChHHHHHHHHHHhCCC------cHhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhH
Confidence 1111111110 01112234444433222 222111 12222222222222222223333332221 11110
Q ss_pred ----HHHHHHHHHHhcCC-----hhhHHHHHHHHH---Hc------CCCCCHH---------HHHHHHHHHHhcCCHH--
Q 006281 437 ----FYNSLMEACCREDL-----LRPAKKLWDQMF---AS------GCSGNLK---------TYNILISKFSEVGEIE-- 487 (652)
Q Consensus 437 ----~~~~ll~~~~~~g~-----~~~a~~~~~~~~---~~------~~~~~~~---------~~~~l~~~~~~~g~~~-- 487 (652)
-+...+..-.-.|. -+.-..++.+.. +. ++-|+.. +.+.|++.+-+.++..
T Consensus 376 k~l~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l 455 (932)
T KOG2053|consen 376 KVLQQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDL 455 (932)
T ss_pred HHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 01111111111121 112222222221 11 1223322 3467778888887765
Q ss_pred -HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 488 -GALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 488 -~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
+|+-+++.-.... +-|..+=..+|+.|+-.|-+..|.++|+.+--+++..|.--|. +...+...|++..+...+...
T Consensus 456 ~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 456 FEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 3444455444332 1244455567888998999999999999766566654433332 344566678888888888776
Q ss_pred hh--CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 567 SS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 567 ~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.. +....+.-..++.+ .+.|.+.+-.+...-=....-+. ...+-+...+.++..++.+.-...+.-|.
T Consensus 534 lkfy~~~~kE~~eyI~~A-Yr~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 534 LKFYDSSLKETPEYIALA-YRRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHhhhhhhhHHHHHHH-HHcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 55 11111222222333 45576766655543322222222 22333456666777777777766666554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.93 E-value=8.8e-05 Score=73.96 Aligned_cols=78 Identities=17% Similarity=0.252 Sum_probs=42.4
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 006281 91 LKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYI 170 (652)
Q Consensus 91 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 170 (652)
+.+....+.|.+|..+++.+.... .-...|..+...|+..|+++.|.++|-+. ..++--|.+|.+.|++
T Consensus 739 ieaai~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence 344445566666666666555443 22334555556666666666666665543 1234455566666666
Q ss_pred hhHHHHHHH
Q 006281 171 DNALKMFDE 179 (652)
Q Consensus 171 ~~a~~~~~~ 179 (652)
+.|.++-++
T Consensus 808 ~da~kla~e 816 (1636)
T KOG3616|consen 808 EDAFKLAEE 816 (1636)
T ss_pred HHHHHHHHH
Confidence 666555444
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.92 E-value=5.6e-08 Score=90.63 Aligned_cols=248 Identities=15% Similarity=0.078 Sum_probs=162.3
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
+.-.|++..++.-.+ ........+......+.+++...|+++.++ .++.... .|.......+...+...++-+.+
T Consensus 11 ~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~ 85 (290)
T PF04733_consen 11 QFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESA 85 (290)
T ss_dssp HHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCH
T ss_pred HHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHH
Confidence 344577777775544 222222223445566778889999877544 4443333 56666665555544443455555
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 455 KKLWDQMFASGCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
..-+++....... .+..........+...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+
T Consensus 86 l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~ 159 (290)
T PF04733_consen 86 LEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ 159 (290)
T ss_dssp HHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5555544433322 23333333345567789999999988753 3677778889999999999999999999987
Q ss_pred CCCCccHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 534 HDVMLARSILSTFMISLC----RRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
.+- | .+...++.++. -.+.+.+|..+|+++.+. +.++...+.++.++...|++++|.+.++++.+.+|.++.
T Consensus 160 ~~e--D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d 236 (290)
T PF04733_consen 160 IDE--D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPD 236 (290)
T ss_dssp CSC--C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHH
T ss_pred cCC--c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHH
Confidence 652 2 34444444433 234699999999999885 455566778889999999999999999999999999887
Q ss_pred HHHHHHHHHhhcCCCC-chHHHHHHHHHHc
Q 006281 609 EISAELFASLSSSSYP-EPILLLLHALQEK 637 (652)
Q Consensus 609 ~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~ 637 (652)
.+.| ++-+....|+. +.+.+++.+++..
T Consensus 237 ~LaN-liv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 237 TLAN-LIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHH-HHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHH-HHHHHHHhCCChhHHHHHHHHHHHh
Confidence 7777 77777777777 6677888887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=5.1e-05 Score=68.70 Aligned_cols=305 Identities=13% Similarity=0.060 Sum_probs=137.4
Q ss_pred HHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH---HHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHH-HHHHHH
Q 006281 231 LIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV---AEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYR-EFILGL 306 (652)
Q Consensus 231 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~ 306 (652)
-+...+...|++..|+.-|....+- |...|-++ ...|...|+..-|+.-+....+ .+||...-. .-...+
T Consensus 43 ElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVle--lKpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 43 ELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLE--LKPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhhcCCccchhhHHHHHh--cCccHHHHHHHhchhh
Confidence 3555566667777777777766653 33333333 3455666666666655555554 345432211 112245
Q ss_pred HccCCHHHHHHHHHHHHcCCCCCCHH--H-------------HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 307 IVERRICEAKELGEVIVSGKFTIDDD--V-------------LNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNL 371 (652)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~-------------~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 371 (652)
.+.|.++.|..-|+.+++........ . ...+.+++..||...|+.....+++-. +.+...+..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 66777777777777777654422111 1 112223334445555555555544421 1223333333
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
..+|...|++..|+.=++...+..-. +..++--+-..+...|+.+.++...++..+. .||....-..-. .+
T Consensus 196 akc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YK------kl 266 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYK------KL 266 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHH------HH
Confidence 44455555555555444444333222 3333334444444455555555555444443 233221100000 00
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHHHHHcCCCHHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLEGLCQETNLQAAFEVF 528 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~~~~~~g~~~~a~~~~ 528 (652)
.+..+.++. +......++|.++++..+...+........ .+..+-.++...|++.+|++..
T Consensus 267 kKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC 330 (504)
T KOG0624|consen 267 KKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQC 330 (504)
T ss_pred HHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHH
Confidence 000000000 011223344555555555444432221111 2223333444555566666666
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+++...+. |..++..-..+|.-...++.|+.-++.+.+
T Consensus 331 ~evL~~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e 369 (504)
T KOG0624|consen 331 KEVLDIDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALE 369 (504)
T ss_pred HHHHhcCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 555554443 455555555555555556666665555544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.88 E-value=5.3e-07 Score=89.42 Aligned_cols=219 Identities=11% Similarity=0.065 Sum_probs=167.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
.-..+...+...|-...|..+|+++. .|.-++.+|+..|+..+|..+..+..+. +|+...|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456677788888888888888764 3455677888888888888888887773 788888888888887
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
..--+++|.++.+..-.. .-..+.....+.++++++.+.|+..++.++- ...+|..+..+..+.+++..|.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence 777788888888765432 1111222233468889999999888877764 66788888888888999999998
Q ss_pred HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccc
Q 006281 562 LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 640 (652)
.|..... +|.+..+|+.+..+|.+.|+-.+|...++++.+-+-.+ ..++...+....+.|.+++|.+.++++.+....
T Consensus 541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~-w~iWENymlvsvdvge~eda~~A~~rll~~~~~ 619 (777)
T KOG1128|consen 541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQH-WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKK 619 (777)
T ss_pred HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCC-CeeeechhhhhhhcccHHHHHHHHHHHHHhhhh
Confidence 8888877 78888899999999999999999999999988887444 455655777778889999999998888776433
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-07 Score=80.76 Aligned_cols=152 Identities=9% Similarity=0.111 Sum_probs=117.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.... |...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCH
Confidence 3457788888876554433221 11 0122367778888888888776433 788888898999999999
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHH-HhcCC--HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISL-CRRGH--FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
++|...|+++...++. +..++..+..++ ...|+ .++|.+++++..+ +|.++..+..++..+...|++++|+..++
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999888876 788888888864 67677 5899999998877 77788888899999999999999999999
Q ss_pred HHHhcCCCCc
Q 006281 598 WIQESSPTML 607 (652)
Q Consensus 598 ~~~~~~~~~~ 607 (652)
++.+..|...
T Consensus 169 ~aL~l~~~~~ 178 (198)
T PRK10370 169 KVLDLNSPRV 178 (198)
T ss_pred HHHhhCCCCc
Confidence 9988877654
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.84 E-value=4e-07 Score=83.93 Aligned_cols=187 Identities=10% Similarity=-0.005 Sum_probs=118.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hhH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA--TTY 508 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~ 508 (652)
....+..+...+...|+++.|...|+++.... +.+. ..+..+..+|...|++++|...++++.+....... .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 44556666777777888888888888777653 2222 35566777777788888888888887764322111 134
Q ss_pred HHHHHHHHcC--------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHH
Q 006281 509 TSLLEGLCQE--------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580 (652)
Q Consensus 509 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 580 (652)
..+..++... |++++|.+.|++++...+. +...+..+..... ..... ......++
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~------------~~~~~~~a 173 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL------------AGKELYVA 173 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH------------HHHHHHHH
Confidence 4444445443 5677777777777766554 2222222211100 00000 01123567
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..+.+.|++++|+..++++.+..|+.+ ...+..++.++.+.|++++|.++++.+....
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 778899999999999999998877642 3445559999999999999999998887653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.83 E-value=0.00025 Score=72.78 Aligned_cols=493 Identities=12% Similarity=0.035 Sum_probs=275.0
Q ss_pred hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 96 LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 96 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
..+++..|.+....+.+.. |+. .|..++.++ .+.|..++|..+++.....+.. |..+...+-.+|-..++.++|
T Consensus 21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~ 96 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA 96 (932)
T ss_pred hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence 6788889988888877753 443 344555554 4889999999999988766555 788999999999999999999
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC----------HH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR----------VE 243 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~ 243 (652)
..+|+..... .|+..-...+..+|.+.+++.+-.+.--++.+. .|..+..+.++++...+.-. ..
T Consensus 97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~---~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~ 171 (932)
T KOG2053|consen 97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN---FPKRAYYFWSVISLILQSIFSENELLDPILLA 171 (932)
T ss_pred HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CCcccchHHHHHHHHHHhccCCcccccchhHH
Confidence 9999999876 455666667777889988877666555555555 55666666666666654321 33
Q ss_pred HHHHHHHHHhhCC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 244 EAFKVLDELRIRE-CKPDFIAYRIVAEEFKLMGSVFEREVVLKK-KRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 244 ~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
-|.+.++.+.+.+ ---+..-...-...+-..|.+++|++++.. ..+.-..-+...-+.-+..+...+++.+..++...
T Consensus 172 LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~ 251 (932)
T KOG2053|consen 172 LAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSR 251 (932)
T ss_pred HHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHH
Confidence 4566666666553 111222222223344567778888888743 33322222333333444555566777777666666
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCH
Q 006281 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKG-RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDM 400 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 400 (652)
+...+... | ..+.+...++++.. ..|-... ....+..+...+...+....... +
T Consensus 252 Ll~k~~Dd----y------------~~~~~sv~klLe~~~~~~a~~~-------~s~~~~l~~~~ek~~~~i~~~~R-g- 306 (932)
T KOG2053|consen 252 LLEKGNDD----Y------------KIYTDSVFKLLELLNKEPAEAA-------HSLSKSLDECIEKAQKNIGSKSR-G- 306 (932)
T ss_pred HHHhCCcc----h------------HHHHHHHHHHHHhcccccchhh-------hhhhhhHHHHHHHHHHhhccccc-C-
Confidence 65554321 1 22222222222222 2221111 11223334444444333332111 1
Q ss_pred HHHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHH------
Q 006281 401 ESYNVMVSFL---CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLK------ 471 (652)
Q Consensus 401 ~~~~~li~~~---~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------ 471 (652)
.|-+-+.++ -.-|+.+++...|-+- .|-.| .|..=+..|...=..+.-..++...... .++..
T Consensus 307 -p~LA~lel~kr~~~~gd~ee~~~~y~~k--fg~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~--~~~~s~~~k~l 378 (932)
T KOG2053|consen 307 -PYLARLELDKRYKLIGDSEEMLSYYFKK--FGDKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLA--DDDSSGDEKVL 378 (932)
T ss_pred -cHHHHHHHHHHhcccCChHHHHHHHHHH--hCCCc---HhHhhHHHhhccCCHHHHHHHHHHhhcc--CCcchhhHHHH
Confidence 222222222 3457777765544322 22222 1111122222222222333333333322 11110
Q ss_pred -HHHHHHHHHHhcCC-----HHHHHHHHHHHH---HC------CCCCCHh---------hHHHHHHHHHcCCCHH---HH
Q 006281 472 -TYNILISKFSEVGE-----IEGALRLFHNML---EK------GVAPDAT---------TYTSLLEGLCQETNLQ---AA 524 (652)
Q Consensus 472 -~~~~l~~~~~~~g~-----~~~A~~~~~~m~---~~------~~~p~~~---------~~~~l~~~~~~~g~~~---~a 524 (652)
.+...+..-.-.|. -+.-..++.+.. +. ++-|+.. +-+.|++.|.+.++.. +|
T Consensus 379 ~~h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~ea 458 (932)
T KOG2053|consen 379 QQHLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEA 458 (932)
T ss_pred HHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 01111111111221 122223332222 12 2333332 3457788888888765 56
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh-HHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-HVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
+-+++..+..++. |..+--.+++.|+-.|-+..|.++++.+.-.....++ -..+...+...|++..+...+.......
T Consensus 459 I~LLE~glt~s~h-nf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~~~~~~t~g~~~~~s~~~~~~lkfy 537 (932)
T KOG2053|consen 459 ITLLENGLTKSPH-NFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHLIFRRAETSGRSSFASNTFNEHLKFY 537 (932)
T ss_pred HHHHHHHhhcCCc-cHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHHHHHHHHhcccchhHHHHHHHHHHHH
Confidence 6666666666554 6667778899999999999999999987543222222 2245566677899999999999988776
Q ss_pred CCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 604 PTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
.++....-. ++..-.+.|.+.+..++..
T Consensus 538 ~~~~kE~~e-yI~~AYr~g~ySkI~em~~ 565 (932)
T KOG2053|consen 538 DSSLKETPE-YIALAYRRGAYSKIPEMLA 565 (932)
T ss_pred hhhhhhhHH-HHHHHHHcCchhhhHHHHH
Confidence 555444555 4445558888888877664
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.81 E-value=0.00017 Score=69.60 Aligned_cols=79 Identities=9% Similarity=0.181 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHH
Q 006281 81 THSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSL 160 (652)
Q Consensus 81 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 160 (652)
+.|..+|+.||+-+..+ ..++++..++++... .+-+...|..-|+.-.+..+++..+.+|.+..... .+...|..-
T Consensus 17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkv--LnlDLW~lY 92 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVKV--LNLDLWKLY 92 (656)
T ss_pred CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH--hhHhHHHHH
Confidence 34667777777766555 777777777777664 24556667777777777777777777777765542 245555554
Q ss_pred HHH
Q 006281 161 LAV 163 (652)
Q Consensus 161 l~~ 163 (652)
+..
T Consensus 93 l~Y 95 (656)
T KOG1914|consen 93 LSY 95 (656)
T ss_pred HHH
Confidence 443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.7e-07 Score=75.91 Aligned_cols=116 Identities=14% Similarity=-0.018 Sum_probs=87.3
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..+|++.++. .|+ .+..+...+...|++++|...|+.++..++. +...+..+..++.+.|++++|+..++++..
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555543 333 3445666777888888888888888877765 777788888888888888888888888877
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+|.++..+..++.++...|++++|++.++++.+..|+.....
T Consensus 88 ~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 88 DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHH
Confidence 677778888888888888888888888888888888774333
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.6e-07 Score=77.74 Aligned_cols=152 Identities=13% Similarity=0.127 Sum_probs=106.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
+-.|...|+++.+....+.+.. |. . .+...++.+++...++...+.+ +.|...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3567778887776544432221 11 0 1223566677777777777665 67788888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHH-HcCCC--HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGL-CQETN--LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
++|...|++..+.... +...+..+..++ ...|+ .++|.+++++.++.++. +...+..+...+.+.|++++|+..+
T Consensus 90 ~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~ 167 (198)
T PRK10370 90 DNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELW 167 (198)
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888876433 566677777653 56666 48888888888888876 7777888888888888888888888
Q ss_pred HHhhh-CCCCc
Q 006281 564 RGLSS-DLGHS 573 (652)
Q Consensus 564 ~~~~~-~~~~~ 573 (652)
+++.+ .|++.
T Consensus 168 ~~aL~l~~~~~ 178 (198)
T PRK10370 168 QKVLDLNSPRV 178 (198)
T ss_pred HHHHhhCCCCc
Confidence 88876 44443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.4e-06 Score=80.28 Aligned_cols=185 Identities=11% Similarity=0.055 Sum_probs=132.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 473 (652)
....+..+...+...|++++|...|+++...... |. ..++..+..++...|++++|...++.+.+.. +.+. .++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence 5667888889999999999999999999876321 11 2466778889999999999999999999863 2222 245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 006281 474 NILISKFSEV--------GEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 474 ~~l~~~~~~~--------g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (652)
..+..++... |++++|.+.|+.+.+. .|+. ..+..+..... .... . .....
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~---~-----------~~~~~ 170 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR---L-----------AGKEL 170 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH---H-----------HHHHH
Confidence 5566666654 7889999999999876 3332 23322221110 0000 0 01123
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+...+.+.|++.+|+..++++....+ .+..+..++.++.+.|++++|..+++.+....|
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 567788999999999999999876322 345788999999999999999999998887765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.1e-06 Score=87.81 Aligned_cols=235 Identities=11% Similarity=0.105 Sum_probs=184.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDP---DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN 474 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 474 (652)
+...|-..|......++.++|++++++.+.. +++- -...|.++++.-..-|.-+...++|+++.+. ......|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHHH
Confidence 5567888888888999999999999998764 1111 1246777777777778888899999999875 34456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhc
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCRR 553 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~ 553 (652)
.|...|.+.+.+++|.++|+.|.+. +......|..++..+.+..+-+.|.++++++++.-+. -........+..-.+.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 8999999999999999999999975 3457788999999999999999999999998876543 1344566777788899
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHHHhhcCCCCchHHHH
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFASLSSSSYPEPILLL 630 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~ 630 (652)
|+.+.+..+|+.... .|...+.|..++..-.++|+.+.+..+|+++..++... -...|.-.+..-...|+-+.++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 999999999998876 77888999999999999999999999999998876443 344455555555567776666555
Q ss_pred HHHHHH
Q 006281 631 LHALQE 636 (652)
Q Consensus 631 ~~~~~~ 636 (652)
=.++.+
T Consensus 1694 KarA~E 1699 (1710)
T KOG1070|consen 1694 KARAKE 1699 (1710)
T ss_pred HHHHHH
Confidence 444443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.76 E-value=7.1e-07 Score=88.55 Aligned_cols=219 Identities=17% Similarity=0.115 Sum_probs=125.1
Q ss_pred CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 363 PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM 442 (652)
Q Consensus 363 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 442 (652)
|-...=..+...+.+.|-...|..+|+++. .|..++.+|+..|+..+|..+..+..++ +|+...|..+.
T Consensus 396 p~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LG 464 (777)
T KOG1128|consen 396 PIWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLG 464 (777)
T ss_pred CcchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhh
Confidence 333333445556666777777777776543 4566677777777777777776666653 56666666666
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
+......-+++|.++.+..... .-..+.....+.++++++.+.|+.-.+... ....+|-.+..+..+.++++
T Consensus 465 Dv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~ALqlek~q 536 (777)
T KOG1128|consen 465 DVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAALQLEKEQ 536 (777)
T ss_pred hhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHHHHhhhH
Confidence 6555555556666655543321 111111222235666666666665554321 13445555555555666666
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.|.+.|...+...+. +...|+++..+|.+.|+..+|...+.++.+ +..+...|........+-|.+++|++.+.++..
T Consensus 537 ~av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 537 AAVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 666666666655554 555666666666666666666666666655 333444455555555566666666666666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.7e-06 Score=90.41 Aligned_cols=216 Identities=12% Similarity=0.066 Sum_probs=149.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREA-YGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a-~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++...+.+=.+...-|..++| .+++.+..+ ++..........+++--.....+ .+..+...+..|.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 444444444555666666665 344444431 22222222222333222222222 3466788899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
....+.|.+++|..+++...+. .|+ ......++..+.+.+++++|+..+++.+..++. +......+..++.+.|++
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcch
Confidence 9999999999999999999975 454 556777888899999999999999999988887 788888899999999999
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++|..+|+++.. .|..+..+..++.++...|+.++|...|+++.+....-.....+ ++ +++..-..++++++
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~-~~------~~~~~~~~~~~~~~ 243 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR-RL------VDLNADLAALRRLG 243 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH-HH------HHHHHHHHHHHHcC
Confidence 999999999986 55667889999999999999999999999988765433222222 22 23344455566554
Q ss_pred Hc
Q 006281 636 EK 637 (652)
Q Consensus 636 ~~ 637 (652)
-.
T Consensus 244 ~~ 245 (694)
T PRK15179 244 VE 245 (694)
T ss_pred cc
Confidence 43
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.73 E-value=3e-06 Score=74.05 Aligned_cols=160 Identities=13% Similarity=0.008 Sum_probs=109.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE 518 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~ 518 (652)
..+-..+...|+-+....+........ +.+......++....+.|++..|+..+++.... -.+|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 445556666677777766666654332 445555566777777777777887777777764 344777777777777777
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-CchhHHHHHHHHhccccHHHHHHHHH
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG-HSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
|++++|..-|.+.++..+. ++..++.+...+.-.|+++.|..++......+. +......++.+....|+++.|..+..
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 8888777777777776665 666777777777777777777777777766544 44555567777777777777777665
Q ss_pred HHHh
Q 006281 598 WIQE 601 (652)
Q Consensus 598 ~~~~ 601 (652)
+-..
T Consensus 227 ~e~~ 230 (257)
T COG5010 227 QELL 230 (257)
T ss_pred cccc
Confidence 5443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.3e-05 Score=70.19 Aligned_cols=165 Identities=13% Similarity=0.136 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
|... ..+-..+...|+-+....+..+......+ |.......+....+.|++..|...+.+..... ++|...|+.+.-
T Consensus 66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~-d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lga 142 (257)
T COG5010 66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYPK-DRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGA 142 (257)
T ss_pred hHHH-HHHHHHHHhcccccchHHHHhhhhccCcc-cHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHH
Confidence 3344 55667777788888888888776544322 55666678888999999999999999998876 889999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+|.+.|++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......... +..+-..+..+....|++++
T Consensus 143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~ 220 (257)
T COG5010 143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFRE 220 (257)
T ss_pred HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHH
Confidence 999999999999999999876333 5566777877888899999999999987776655 78888889999999999999
Q ss_pred HHHHHHHhhh
Q 006281 559 ATKLLRGLSS 568 (652)
Q Consensus 559 A~~~~~~~~~ 568 (652)
|..+...-..
T Consensus 221 A~~i~~~e~~ 230 (257)
T COG5010 221 AEDIAVQELL 230 (257)
T ss_pred HHhhcccccc
Confidence 9988765443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.8e-06 Score=71.82 Aligned_cols=124 Identities=10% Similarity=-0.007 Sum_probs=93.3
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
..++++..+. .|+ .+..+...+...|++++|...|+........ +...|..+..++...|++++|...|++++..
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3455555543 344 3555677778888999999988888876433 6777888888888889999999999988888
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
++. +...+..+..++...|++++|+..++.... .|.++..+...+.++.
T Consensus 88 ~p~-~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 88 DAS-HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQI 137 (144)
T ss_pred CCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 775 777888888888889999999999888877 6666666655555443
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.9e-06 Score=87.42 Aligned_cols=204 Identities=12% Similarity=0.044 Sum_probs=168.8
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSG---NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+...|...|.-....++.+.|+++.++++.. ++.- -...|.++++.-..-|.-+...++|+++.+. .. .-..|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy-cd-~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY-CD-AYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-cc-hHHHHH
Confidence 4567888888889999999999999999865 2211 2356778888777778888899999999875 22 345688
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC--CchhHHHHHHHHhcc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LG--HSDSHVILLKSLADA 586 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~--~~~~~~~l~~~~~~~ 586 (652)
.|...|.+.+.+++|.++++.|++.-- -...+|..++..+.+..+-++|..++.++... |. ......-.+..-++.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhc
Confidence 899999999999999999999988654 37789999999999999999999999998773 33 333444667777899
Q ss_pred ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
|+.+.+..+|+..+...|.- ..+|+.+++.-.++|+.+.++.+|++....++.+
T Consensus 1614 GDaeRGRtlfEgll~ayPKR-tDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKR-TDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred CCchhhHHHHHHHHhhCccc-hhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 99999999999999999876 5788989999999999999999999999886643
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.1e-08 Score=56.79 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=28.3
Q ss_pred CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 255 RECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (652)
Q Consensus 255 ~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 288 (652)
+|+.||..||++||.+|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 3678888888888888888888888888888773
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.1e-05 Score=83.18 Aligned_cols=44 Identities=14% Similarity=-0.011 Sum_probs=32.8
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+..+...|...+++++++.+++.+++.+|.+...... ++..|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~-l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREE-LIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHH-HHHHHH
Confidence 34455566777788999999999999998887655554 777765
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4.7e-05 Score=66.12 Aligned_cols=185 Identities=12% Similarity=0.113 Sum_probs=90.1
Q ss_pred CChHHHHHHHHHHHhC---C-CCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChh
Q 006281 379 NKSDELVEVYKVLSAN---D-YFTDME-SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLR 452 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~---~-~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~ 452 (652)
.+.++..+++..+... | ..++.. .|..++-+....|+.+.|...++++...- |.. ..-..-...+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 4455555555555432 2 122221 23334444455555666666666555442 221 11111111223445566
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
+|.++++.+.+.+ +.|..++-.=+...-..|+.-+|++-+....+. +..|...|.-+...|...|+++.|.-.+++++
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666665554 444445544444444455555555555555553 33455666666666666666666666666655
Q ss_pred hCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhh
Q 006281 533 NHDVMLARSILSTFMISLCRRG---HFLVATKLLRGLSS 568 (652)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~ 568 (652)
-..|. ++..+..+...+.-.| ++.-|.+++.+...
T Consensus 182 l~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alk 219 (289)
T KOG3060|consen 182 LIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALK 219 (289)
T ss_pred HcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 55543 4445555555443333 23445555555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.4e-08 Score=56.42 Aligned_cols=29 Identities=31% Similarity=0.660 Sum_probs=11.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
.||..+|+.||.+|++.|++++|.++|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 33333333333333333333333333333
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-05 Score=82.36 Aligned_cols=186 Identities=12% Similarity=0.086 Sum_probs=138.4
Q ss_pred HHHHHHHHHHhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEAC 445 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 445 (652)
....+=.+....|..++|-+ ++.+.. .++.....-....+++.-.....+. ...++..+..|....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~La~i~ 96 (694)
T PRK15179 30 ILDLLEAALAEPGESEEAGRELLQQAR------------QVLERHAAVHKPAAALPELLDYVRR-YPHTELFQVLVARAL 96 (694)
T ss_pred HHhHHHHHhcCcccchhHHHHHHHHHH------------HHHHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHHHHHHH
Confidence 33333344555666665533 333322 2333333333333444333333333 234688888899999
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (652)
.+.|..++|..+++...+.. +.+......+..++.+.+++++|+..+++..+.... +......+..++.+.|++++|.
T Consensus 97 ~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~~l~~~g~~~~A~ 174 (694)
T PRK15179 97 EAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAKSWDEIGQSEQAD 174 (694)
T ss_pred HHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHhcchHHHH
Confidence 99999999999999999874 555677888999999999999999999999987544 5667777888899999999999
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+|++++..++. +...+..+..++...|+.++|...|++..+
T Consensus 175 ~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~ 216 (694)
T PRK15179 175 ACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLD 216 (694)
T ss_pred HHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999986654 678899999999999999999999999877
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=71.71 Aligned_cols=114 Identities=12% Similarity=0.038 Sum_probs=82.8
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.+++....... +......+...+...|++++|.+.|+.+...++. +...+..+..++...|++++|..++++... .|
T Consensus 5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 82 (135)
T TIGR02552 5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP 82 (135)
T ss_pred hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 45555543222 3344556666777788888888888887776654 667777788888888888888888887755 56
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++..+..++.++...|++++|+..++++.+.+|+..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 119 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENP 119 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 6667777788888888888888888888888877663
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.9e-05 Score=73.29 Aligned_cols=184 Identities=14% Similarity=0.096 Sum_probs=131.2
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
|+...+...+.+......-..+-.++-+..+.+ -...-|.. ...+...|++++|+..++.+.+.- +.|+..+....
T Consensus 272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~--~~aa~YG~-A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~ 347 (484)
T COG4783 272 PDFQLARARIRAKYEALPNQQAADLLAKRSKRG--GLAAQYGR-ALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAG 347 (484)
T ss_pred ccHHHHHHHHHHHhccccccchHHHHHHHhCcc--chHHHHHH-HHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 456666666665554443333333333333211 11222333 334556788999999999988763 56666777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
..+.+.++.++|.+.++++... .|+ ......+.++|.+.|++.+|+.+++.....++. ++..|..|.++|...|+.
T Consensus 348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~-dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPE-DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHhCch
Confidence 8889999999999999999865 555 556667788899999999999999988877776 888999999999999988
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 557 LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+|.. ..+..+...|++++|+..+..+.+...
T Consensus 425 ~~a~~----------------A~AE~~~~~G~~~~A~~~l~~A~~~~~ 456 (484)
T COG4783 425 AEALL----------------ARAEGYALAGRLEQAIIFLMRASQQVK 456 (484)
T ss_pred HHHHH----------------HHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 77754 344566777999999999988888753
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.1e-06 Score=70.17 Aligned_cols=94 Identities=21% Similarity=0.145 Sum_probs=44.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
....++..+...|++++|.+.++.+.. +|.++..+..++..+...|++++|...++++.+.+|......+. ++.++..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFH-AAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHH-HHHHHHH
Confidence 334444444455555555555554443 34444444455555555555555555555555444444333332 4444555
Q ss_pred CCCCchHHHHHHHHHH
Q 006281 621 SSYPEPILLLLHALQE 636 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~ 636 (652)
.|++++|.+.+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5555555555544443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.2e-05 Score=67.24 Aligned_cols=115 Identities=10% Similarity=0.026 Sum_probs=56.2
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFL 557 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~ 557 (652)
.++...+...++.+...... + ......+...+...|++++|...|+.++.....+. ......+..++...|+++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d 102 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD 102 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 45555555555555543211 1 12222233445555666666666665555442222 112333455555555566
Q ss_pred HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 558 VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+|+..++.....+..+..+...+.++...|++++|+..|++
T Consensus 103 ~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 103 EALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66555555443333344444555555555555555555554
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00022 Score=62.58 Aligned_cols=254 Identities=10% Similarity=0.064 Sum_probs=149.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
-..|..|.+..++..-....... -+...-.-+-++|...|++..... .+.... .|.......+.......++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---cccccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455566666655444433221 233344445566667776554332 222222 334444444444444445444
Q ss_pred HHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 418 EAY-GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 418 ~a~-~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
.-+ ++.+.+.......+......-...|+..|++++|.+...... +......=+..+.+..+++-|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 334444444333333333334455778888888888777622 2333333345566777888888888888
Q ss_pred HHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC
Q 006281 497 LEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG 571 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~ 571 (652)
.+.. +..|.+.|..++.+ .+.+.+|.-+|+++.++- .|++.+.+..+.++...|++++|..+++.+.. ++.
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~-~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~ 239 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKT-PPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK 239 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhccc-CCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC
Confidence 8642 55666666666543 456888888888876543 35777888888888888888888888888776 556
Q ss_pred CchhHHHHHHHHhcccc-HHHHHHHHHHHHhcCCCCc
Q 006281 572 HSDSHVILLKSLADARE-VEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 572 ~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~ 607 (652)
++++...++..-...|. .+-..+.+.++....|+.+
T Consensus 240 dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~h~ 276 (299)
T KOG3081|consen 240 DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPEHP 276 (299)
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCcch
Confidence 66666555554444554 3445667777777777764
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=9.9e-05 Score=70.59 Aligned_cols=111 Identities=16% Similarity=0.185 Sum_probs=53.9
Q ss_pred hcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
..|++++|+..++.++.. .| |+..+....+.+.+.++..+|.+.+++++...+. .....-.+..+|.+.|++.+|+
T Consensus 318 ~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai 394 (484)
T COG4783 318 LAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAI 394 (484)
T ss_pred HhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHH
Confidence 445555555555555433 22 2333333344455555555555555555554433 2334444555555555555555
Q ss_pred HHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 561 KLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 561 ~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
++++.... +|.++..|..|+.+|...|+..+|...
T Consensus 395 ~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A 430 (484)
T COG4783 395 RILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA 430 (484)
T ss_pred HHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH
Confidence 55554433 444555555555555555555555433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00064 Score=59.78 Aligned_cols=68 Identities=16% Similarity=0.248 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++++++..+.. ++.++..++-+-...|.
T Consensus 189 ~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk 256 (299)
T KOG3081|consen 189 IQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK 256 (299)
T ss_pred hhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence 44444455554432 3444444444444444455555555555555444443 44444444444444444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00039 Score=73.89 Aligned_cols=151 Identities=12% Similarity=0.074 Sum_probs=77.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH
Q 006281 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL 306 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~ 306 (652)
.++..+..+|-+.|+.++|..+++++.+.. .-|+...|.+...|... ++++|+.++.+... .+
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~---------------~~ 179 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIY---------------RF 179 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHH---------------HH
Confidence 344445555556666666666666665544 22455555555555555 56666555544332 24
Q ss_pred HccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChHHHH
Q 006281 307 IVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEK-GRVPTLSTLSNLSKNLCKRNKSDELV 385 (652)
Q Consensus 307 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 385 (652)
+..+++..+.+++..+....+. +.+.-..+.+.+... |..--..++-.+-..|-..++++++.
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~----------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i 243 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSD----------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI 243 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcc----------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence 4444555555555555544322 111111122222211 11222334445555666777777777
Q ss_pred HHHHHHHhCCCCcCHHHHHHHHHHHH
Q 006281 386 EVYKVLSANDYFTDMESYNVMVSFLC 411 (652)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~li~~~~ 411 (652)
.+++.+.+.... |.....-++.+|.
T Consensus 244 ~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 244 YILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 777777776544 5556666666665
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.34 E-value=8.7e-06 Score=66.25 Aligned_cols=89 Identities=11% Similarity=0.010 Sum_probs=44.0
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|++++|.++|+-....++. +...|..|.-++...|++.+|+..+..+.. ++.++.++..++.++...|+.+.
T Consensus 43 ~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 43 MQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 3344455555555555544444443 444444455555555555555555554444 44444455555555555555555
Q ss_pred HHHHHHHHHhc
Q 006281 592 AIEHIKWIQES 602 (652)
Q Consensus 592 A~~~~~~~~~~ 602 (652)
|.+.++.+...
T Consensus 122 A~~aF~~Ai~~ 132 (157)
T PRK15363 122 AIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.0017 Score=56.84 Aligned_cols=192 Identities=12% Similarity=0.104 Sum_probs=121.3
Q ss_pred HhcCChhHHHHHHHHHHH---cC-CCCCHHH-HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 341 VSSIDPRSAIVFFNFMIE---KG-RVPTLST-LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~---~~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (652)
+...+.++.++++.++.. .| ..++..+ |..++-+....|+.+.|..+++.+...-+. +..+-..-.-.+-..|+
T Consensus 23 ~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 23 ETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhc
Confidence 334467777777777753 23 4455444 445555666778888888888877665311 22222222223345677
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
+++|+++++.+.+... .|.+++..=+...-..|+.-+|++-+....+. +..|...|.-+...|...|++++|.-.+++
T Consensus 102 ~~~A~e~y~~lL~ddp-t~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDDP-TDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhccCc-chhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 8888888888777652 25666666666666667777777776666655 467788888888888888888888888888
Q ss_pred HHHCCCCC-CHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCC
Q 006281 496 MLEKGVAP-DATTYTSLLEGLCQET---NLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 496 m~~~~~~p-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~ 537 (652)
+.-. .| ++..+..+.+.+.-.| +.+.+.++|.+.++..+.
T Consensus 180 ~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 180 LLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPK 223 (289)
T ss_pred HHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChH
Confidence 7754 33 3444455555544333 566677777777766553
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.31 E-value=3.6e-05 Score=64.36 Aligned_cols=125 Identities=10% Similarity=0.043 Sum_probs=95.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch----hHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~ 580 (652)
.|..++..+ ..++...+...++.+....+.-. ....-.+...+...|++++|...|+.+....+++. ....++
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 455555555 47889999999999888765521 23344566778899999999999999988544432 445789
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
.++...|++++|+..++...... ..+......+++|.+.|++++|.+.|++.
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999999999999997744322 33456667999999999999999999864
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.6e-05 Score=75.35 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
....|+..+...++++.|.++++++.+.. |+ ....++..+...++-.+|++++++.+.... -+...+..-.+.|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p-~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENP-QDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 34556667777788999999999988763 54 344577778778888888888888886532 25666666667788
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL 570 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 570 (652)
+.++++.|+++.+++....+. +..+|..|+.+|.+.|++++|+..++.++..+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 888899999999988887776 77788889999999999999998888887643
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=71.04 Aligned_cols=87 Identities=9% Similarity=0.104 Sum_probs=45.2
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
+.+.+++.+|+..|.+.++...+ |.+-|..-..+|++.|.++.|++-.+.++..++. ....|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHHH
Confidence 34445555555555555544222 4444444555555555555555555555555443 344555555555555555555
Q ss_pred HHHHHHhhh
Q 006281 560 TKLLRGLSS 568 (652)
Q Consensus 560 ~~~~~~~~~ 568 (652)
++.|++..+
T Consensus 169 ~~aykKaLe 177 (304)
T KOG0553|consen 169 IEAYKKALE 177 (304)
T ss_pred HHHHHhhhc
Confidence 555555554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.18 E-value=3.7e-06 Score=62.60 Aligned_cols=81 Identities=22% Similarity=0.302 Sum_probs=41.8
Q ss_pred CCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (652)
.|+++.|+.+++++++..+. ++...+..++.++.+.|++++|.+++++...++.+......++.++.+.|++++|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l 81 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL 81 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 35556666666665555442 23334444556666666666666666552223333344445555666666666666655
Q ss_pred HH
Q 006281 597 KW 598 (652)
Q Consensus 597 ~~ 598 (652)
++
T Consensus 82 ~~ 83 (84)
T PF12895_consen 82 EK 83 (84)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00034 Score=57.75 Aligned_cols=131 Identities=15% Similarity=0.113 Sum_probs=78.8
Q ss_pred CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHHH
Q 006281 502 APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHVI 578 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~ 578 (652)
.|+...-..|..++...|+..+|...|++.+.--+.-|...+-.+.++....+++.+|...++++-+. ...++....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 44555555566666666666666666666555444445666666666666666666666666665542 224455556
Q ss_pred HHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 579 LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 579 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
+++.+...|++..|...++.+....|+....++ +...+.++|+..++..-+...
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~--Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIY--YAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHH--HHHHHHHhcchhHHHHHHHHH
Confidence 666666666666666666666666666654444 445566666665555444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00014 Score=70.42 Aligned_cols=126 Identities=17% Similarity=0.208 Sum_probs=97.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
....++..+...++++.|+.+|+++.+.. |+. ...++..+...++-.+|.+++++..+.. +.+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456666677888999999999998873 553 3457777777888888999988888653 456666666677788
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
+.++++.|+.+.+++.+. .|+ ..+|..|..+|...|+++.|+..++.+.-.
T Consensus 246 ~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~ 297 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPML 297 (395)
T ss_pred hcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCC
Confidence 899999999999999865 454 458999999999999999999888865443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.09 E-value=6e-05 Score=60.79 Aligned_cols=100 Identities=14% Similarity=0.086 Sum_probs=61.9
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~ 580 (652)
++..+...+.+.|++++|.+.|++++...+. .....+..++.++.+.|++++|.+.++.+.. .|.. +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4455556666677777777777766654432 1133455566667777777777777776654 2222 34555666
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++.+.|+.++|...++++.+..|+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 109 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGS 109 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCC
Confidence 66677777777777777777766665
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.07 E-value=8.9e-05 Score=59.78 Aligned_cols=96 Identities=11% Similarity=0.055 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELF 615 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 615 (652)
++..++..+.+.|++++|.+.++.+.. .|.+ +..+..++.++.+.|+++.|+..++++....|+.+ ...+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 444555666666666666666666654 2222 23455566666666666666666666666555532 22333366
Q ss_pred HHhhcCCCCchHHHHHHHHHHc
Q 006281 616 ASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++.+.|++++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHH
Confidence 6666666666666666666655
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=9.6e-05 Score=72.00 Aligned_cols=96 Identities=9% Similarity=0.052 Sum_probs=76.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHH
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
...+...|++++|++.|+++++.++. +...|..+..+|.+.|++++|+..++++.. +|..+..+..++.+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHH
Confidence 44556778888888888888887776 677777888888888888888888888876 6667777888888888888888
Q ss_pred HHHHHHHHHHhcCCCCcH
Q 006281 591 MAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~ 608 (652)
+|+..++++.+.+|....
T Consensus 88 eA~~~~~~al~l~P~~~~ 105 (356)
T PLN03088 88 TAKAALEKGASLAPGDSR 105 (356)
T ss_pred HHHHHHHHHHHhCCCCHH
Confidence 888888888888887743
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=66.11 Aligned_cols=120 Identities=15% Similarity=0.108 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-C--CHHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-G--HFLVATKL 562 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~A~~~ 562 (652)
.+....-++.-+..+.. |...|..|...|...|+.+.|...|.++.+..++ ++..+..+..++... | ...++.++
T Consensus 138 ~~~l~a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 34444444444444333 6667777777777777777777777777666654 666666666664432 2 24466777
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++++.. ++.+..+...|+..+...|++.+|...++.|++..|...
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 777666 666666777777777777777777777777777666553
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.04 E-value=7.6e-05 Score=57.30 Aligned_cols=56 Identities=13% Similarity=0.023 Sum_probs=21.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.+..++...|++++|.+.++.... .+.....+..++..+...|++++|...+.++.
T Consensus 39 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 39 NLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 333333334444444444433332 22222233333344444444444444444333
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.01 E-value=1.2e-05 Score=48.05 Aligned_cols=33 Identities=52% Similarity=0.940 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
+|+.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777676665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00017 Score=58.90 Aligned_cols=95 Identities=16% Similarity=0.003 Sum_probs=71.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
....+...+...|++++|.++|+.+.. +|.+...|..|+.++...|++++|+..|..+...+|+++...++ ++.++..
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~-ag~c~L~ 115 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWA-AAECYLA 115 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHH-HHHHHHH
Confidence 444566667777888888888877766 67777777788888888888888888888888888777666666 7777888
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|+.+.|++.|+.....
T Consensus 116 lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 116 CDNVCYAIKALKAVVRI 132 (157)
T ss_pred cCCHHHHHHHHHHHHHH
Confidence 88888888877766655
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=47.81 Aligned_cols=33 Identities=36% Similarity=0.627 Sum_probs=23.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccC
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFS 188 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 188 (652)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 567777777777777777777777777776665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.97 E-value=7.2e-05 Score=57.42 Aligned_cols=95 Identities=16% Similarity=0.016 Sum_probs=79.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
++..++..+...|++++|...++++.. .+.....+..++.++...|++++|++.++++....|... ..+..++..+..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 80 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-KAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-hHHHHHHHHHHH
Confidence 355677788889999999999999876 455556778899999999999999999999999988875 344458889999
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|...+++..+.
T Consensus 81 ~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 81 LGKYEEALEAYEKALEL 97 (100)
T ss_pred HHhHHHHHHHHHHHHcc
Confidence 99999999999887654
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.96 E-value=1.4e-05 Score=47.27 Aligned_cols=32 Identities=44% Similarity=0.788 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 45555555555555555555555555555554
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.5e-05 Score=47.17 Aligned_cols=33 Identities=42% Similarity=0.583 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhCCCcc
Q 006281 155 EICNSLLAVLASDGYIDNALKMFDEMSHRGVEF 187 (652)
Q Consensus 155 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 187 (652)
.+||.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456677777777777777777777777666655
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=9.9e-06 Score=60.28 Aligned_cols=80 Identities=20% Similarity=0.091 Sum_probs=63.2
Q ss_pred cCCHHHHHHHHHHhhh-CCC--CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 553 RGHFLVATKLLRGLSS-DLG--HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
.|+++.|+.+++++.+ .|. +...+..++.++.+.|++++|++++++ .+.++.+....+- ++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l-~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYL-LARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHH-HHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHH-HHHHHHHhCCHHHHHH
Confidence 5889999999999987 342 334566789999999999999999999 6666655455554 7899999999999999
Q ss_pred HHHHH
Q 006281 630 LLHAL 634 (652)
Q Consensus 630 ~~~~~ 634 (652)
.+++.
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 99863
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0017 Score=60.91 Aligned_cols=170 Identities=14% Similarity=0.045 Sum_probs=120.8
Q ss_pred CCHHHHHHHH-HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006281 433 PDVSFYNSLM-EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL 511 (652)
Q Consensus 433 p~~~~~~~ll-~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 511 (652)
|...+|..+- .++...|+.++|.++--...+.. ..+....-.--.++--.++.+.|...|++.+.. .|+...-..+
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk~~ 242 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSKSA 242 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHHhH
Confidence 3344444332 34567788999988887777653 233322222223444578889999999988854 4554432222
Q ss_pred -------------HHHHHcCCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch
Q 006281 512 -------------LEGLCQETNLQAAFEVFNKSVNHD---VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD 574 (652)
Q Consensus 512 -------------~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~ 574 (652)
.+-..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+.++|+.-.+.... ++....
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syik 322 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIK 322 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHH
Confidence 233467899999999999998876 455667788888889999999999999988877 554555
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.+..-+.++...++|++|.+-++++.+...+
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 6667778888899999999999999887654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=54.32 Aligned_cols=60 Identities=15% Similarity=0.151 Sum_probs=31.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+..+.+.|++++|++.++++.. .|.++..+..++.++...|++++|+..++++.+.+|++
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~ 64 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN 64 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 3445555555555555555544 34444455555555555555555555555555555543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00028 Score=61.02 Aligned_cols=117 Identities=15% Similarity=0.074 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
...+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++++...+. +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 34456666666677777777777777765433222 245666666677777777777777776665544 445555566
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++...|+...+..-++... ..+++|++.++++...+|.+
T Consensus 114 ~~~~~~g~~~~a~~~~~~A~-------------------~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQDEAE-------------------ALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHcCChHhHhhCHHHHH-------------------HHHHHHHHHHHHHHhhCchh
Confidence 66666666555443332221 22577888888888888876
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.6e-05 Score=53.74 Aligned_cols=62 Identities=13% Similarity=0.064 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc-cHHHHHHHHHHHHhcC
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR-EVEMAIEHIKWIQESS 603 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 603 (652)
+|..++..+...|++++|+..|++..+ +|.++..+..++.++...| ++++|++.++++.+.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 344444444444444444444444433 3334444444444444444 3444444444444443
|
... |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00044 Score=59.64 Aligned_cols=101 Identities=13% Similarity=0.001 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
.|..+...+...|++++|...|++++.....+ ...++..+..++...|++++|++.++++.. .+.....+..++.++
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555566666666666555443221 123455555666666666666666665544 333344444444444
Q ss_pred h-------ccccHH-------HHHHHHHHHHhcCCCCc
Q 006281 584 A-------DAREVE-------MAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~-------~~g~~~-------~A~~~~~~~~~~~~~~~ 607 (652)
. ..|+++ +|+.+++++...+|...
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 4 455544 56666667777777653
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00048 Score=67.10 Aligned_cols=126 Identities=11% Similarity=0.069 Sum_probs=99.3
Q ss_pred CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH
Q 006281 184 GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (652)
Q Consensus 184 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 263 (652)
+...+......+++.+....+++.+..++-+.........-...+..++++.|.+.|..+.++.++..=...|+-||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34456667777788888888888888888888876333322234445889999999999999999988888899999999
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHcc
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVE 309 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 309 (652)
+|.+|..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 9999999999999999999998888887777777777777766654
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0004 Score=67.63 Aligned_cols=118 Identities=19% Similarity=0.156 Sum_probs=56.1
Q ss_pred CHHHHHHHHHHHhc-CChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHH
Q 006281 330 DDDVLNALIGSVSS-IDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVM 406 (652)
Q Consensus 330 ~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 406 (652)
+......++..+.. .+.+.+..++....... ...-..|..++++.|.+.|..+.++.+++.=...|+.||..++|.|
T Consensus 65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L 144 (429)
T PF10037_consen 65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL 144 (429)
T ss_pred cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence 33334444444333 24444555555444331 1112233345555555555555555555555555555555555555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 447 (652)
|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 55555555555555555555544444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00021 Score=69.69 Aligned_cols=92 Identities=9% Similarity=-0.060 Sum_probs=81.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
.-+..+...|++++|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+|...|+
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a-~~~lg~~~~~lg~ 85 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKA-YLRKGTACMKLEE 85 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHH-HHHHHHHHHHhCC
Confidence 345667889999999999999987 77788899999999999999999999999999999988555 4459999999999
Q ss_pred CchHHHHHHHHHHc
Q 006281 624 PEPILLLLHALQEK 637 (652)
Q Consensus 624 ~~~a~~~~~~~~~~ 637 (652)
+++|+..+++..+.
T Consensus 86 ~~eA~~~~~~al~l 99 (356)
T PLN03088 86 YQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987765
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00033 Score=62.89 Aligned_cols=97 Identities=15% Similarity=0.159 Sum_probs=82.0
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~ 523 (652)
-+.+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++-.+..+..... ...+|..|..+|...|++++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence 4678899999999999999985 678888999999999999999999999998865322 35689999999999999999
Q ss_pred HHHHHHHhhhCCCCccHHHHH
Q 006281 524 AFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~ 544 (652)
|++.|++.++.++ +..+|.
T Consensus 168 A~~aykKaLeldP--~Ne~~K 186 (304)
T KOG0553|consen 168 AIEAYKKALELDP--DNESYK 186 (304)
T ss_pred HHHHHHhhhccCC--CcHHHH
Confidence 9999998887665 444444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0017 Score=66.23 Aligned_cols=140 Identities=11% Similarity=0.013 Sum_probs=88.9
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcC--------CCHHHHHHHHHHhh
Q 006281 467 SGNLKTYNILISKFSE--V---GEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQE--------TNLQAAFEVFNKSV 532 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~ 532 (652)
+.+...|...+.+... . +....|..+|++.++. .|+ ...|..+..++... .+...+.+...+..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 4555556555555332 1 2245666666666654 233 23333332222111 12344455555444
Q ss_pred hCC-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 533 NHD-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 533 ~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
... ...++..+..+.......|++++|...++++..-.++...|..++..+...|+.++|++.++++...+|..+.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 432 2235567777777777789999999999999884446778889999999999999999999999999998753
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.001 Score=62.53 Aligned_cols=129 Identities=14% Similarity=0.206 Sum_probs=67.1
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 515 (652)
+|..+++..-+.+..+.|..+|.+..+.+ ..+...|...... |...++.+.|..+|+...+. +..+...|...++.+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 45555555556666666666666665432 2223333333333 22234455566666666653 333555566666666
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCcc---HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLA---RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+.|+.+.|..+|++++.. +..+ ..+|..++..=.+.|+++.+.++.+++.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6666666666666665544 2112 23566666666666666666666666555
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0075 Score=50.09 Aligned_cols=132 Identities=14% Similarity=0.114 Sum_probs=78.6
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILST 545 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ 545 (652)
.|+...--.|..+....|+..+|...|++...--+.-|......+.++....+++..|...+++..+.++. -++...-.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666666666677777777777766665334445556666666666667777777777666554421 01223344
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+.+.|...|++.+|+..|+.+....+.+......+..+.+.|+.++|..-+..
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~ypg~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISYYPGPQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHhCCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 56666666777777777766666545555555555555666665555444433
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00049 Score=51.90 Aligned_cols=42 Identities=19% Similarity=0.362 Sum_probs=23.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRKGL-DPDVSFYNSLMEACCR 447 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~ 447 (652)
.|.-+...+++.....+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 34444444556666666666666555 5566666655555543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.0015 Score=59.14 Aligned_cols=100 Identities=17% Similarity=0.242 Sum_probs=58.8
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---CCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE---TNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
+-|...|-.|...|...|+.+.|...|.+..+.. .++...+..+..++... ....++..+|++++..++. +....
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHH
Confidence 5556666666666666666666666666666532 12444445555444322 2345566666666666655 56666
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..|...+...|++.+|...++.|..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~ 255 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLD 255 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6666666666666666666666655
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00066 Score=51.23 Aligned_cols=76 Identities=17% Similarity=0.286 Sum_probs=39.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCC-CcCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDY-FTDMESYNVMVSFLCTSG--------RLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~g--------~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
-|..+...+++.....+|+.+.+.|+ .|+..+|+.++.+.++.. +.-..+.+|++|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34444444555555556666555555 555556665555554432 122344555555555555555555555
Q ss_pred HHHHH
Q 006281 442 MEACC 446 (652)
Q Consensus 442 l~~~~ 446 (652)
+..+.
T Consensus 111 l~~Ll 115 (120)
T PF08579_consen 111 LGSLL 115 (120)
T ss_pred HHHHH
Confidence 54443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.048 Score=51.14 Aligned_cols=249 Identities=12% Similarity=0.057 Sum_probs=155.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.-.|+++.|.+-|+.|... |... ....|.-.--+.|..+.|..+-+..-..-.. -...+...+...|..|+++.
T Consensus 131 l~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~ 206 (531)
T COG3898 131 LLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDG 206 (531)
T ss_pred HhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHH
Confidence 3458888888888888763 2211 2333444445678888888877776655322 34567778888888888888
Q ss_pred HHHHHHHHHHc-CCCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHcCCCHHHHHH
Q 006281 454 AKKLWDQMFAS-GCSGNLK--TYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDATT-YTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 454 a~~~~~~~~~~-~~~~~~~--~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~ 526 (652)
|+++++.-... -+.++.. .-..|+.+-+. .-+...|...-.+.. .+.||... -..-..++.+.|+..++-.
T Consensus 207 AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~--KL~pdlvPaav~AAralf~d~~~rKg~~ 284 (531)
T COG3898 207 ALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEAN--KLAPDLVPAAVVAARALFRDGNLRKGSK 284 (531)
T ss_pred HHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHh--hcCCccchHHHHHHHHHHhccchhhhhh
Confidence 88888876654 2334432 12223322111 123455555544444 34555432 2334567889999999999
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCH--HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHF--LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
+++.+-+..+.|+. .. +....+.|+. +...+ .+++.+ .+.+.++...++.+....|++..|..--+.+....
T Consensus 285 ilE~aWK~ePHP~i--a~--lY~~ar~gdta~dRlkR-a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~ 359 (531)
T COG3898 285 ILETAWKAEPHPDI--AL--LYVRARSGDTALDRLKR-AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA 359 (531)
T ss_pred HHHHHHhcCCChHH--HH--HHHHhcCCCcHHHHHHH-HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC
Confidence 99988887766653 32 2234556653 22222 222222 55677788888888899999999998888888888
Q ss_pred CCCcHHHHHHHHHHhhc-CCCCchHHHHHHHHHHc
Q 006281 604 PTMLQEISAELFASLSS-SSYPEPILLLLHALQEK 637 (652)
Q Consensus 604 ~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~ 637 (652)
|....... +.++-.. .||-.++...+-+..+.
T Consensus 360 pres~~lL--lAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 360 PRESAYLL--LADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred chhhHHHH--HHHHHhhccCchHHHHHHHHHHhcC
Confidence 76543333 6666554 48988988888766554
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00016 Score=50.63 Aligned_cols=59 Identities=15% Similarity=0.066 Sum_probs=51.5
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++..+.+.|++++|++.++++.+..|......+. ++.++...|++++|...++++.+.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYL-LGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHH-HHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46788999999999999999999999997555554 999999999999999999998765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00061 Score=63.58 Aligned_cols=131 Identities=12% Similarity=-0.010 Sum_probs=85.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhh----CCC-CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------CCCCch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVN----HDV-MLARSILSTFMISLCRRGHFLVATKLLRGLSS-------DLGHSD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~ 574 (652)
.|..|.+.|.-.|+++.|+...+.-+. .|- ......+..+..++.-.|+++.|.+.++.... ......
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 455666666667888888877664322 121 11234577788888888888888888775421 222345
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP-----TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+..+|++.|.-..++++|+.+..+-+.... .-....+.+|+.+|...|..++|+.+.+.-.+.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 667888888888888888887766433211 112344555888888888888888887765544
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.4e-05 Score=42.97 Aligned_cols=29 Identities=48% Similarity=0.843 Sum_probs=14.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34445555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0038 Score=58.98 Aligned_cols=95 Identities=13% Similarity=0.083 Sum_probs=47.1
Q ss_pred HHHHHHHcC-CCHHHHHHHHHHhhhC----C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-----c---hh
Q 006281 510 SLLEGLCQE-TNLQAAFEVFNKSVNH----D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH-----S---DS 575 (652)
Q Consensus 510 ~l~~~~~~~-g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~---~~ 575 (652)
.+...|... |++++|++.|+++.+. + ..--..++..++..+.+.|++++|.++++++...... . ..
T Consensus 119 ~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~ 198 (282)
T PF14938_consen 119 ELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEY 198 (282)
T ss_dssp HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHH
Confidence 334445555 6666666666665442 1 1111234555666666677777777777665442111 0 11
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+...+-++...|+...|.+.+++....+|
T Consensus 199 ~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 199 FLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 22333344556666677777766666655
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00016 Score=51.37 Aligned_cols=65 Identities=14% Similarity=-0.013 Sum_probs=57.3
Q ss_pred CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-CCchHHHHHHHHHHc
Q 006281 572 HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS-YPEPILLLLHALQEK 637 (652)
Q Consensus 572 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~ 637 (652)
++..|..++..+...|++++|+..++++.+.+|+.....++ ++.++...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~-~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYN-LGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHH-HHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678899999999999999999999999999998655555 999999999 799999999987764
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0012 Score=60.76 Aligned_cols=101 Identities=10% Similarity=-0.001 Sum_probs=73.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCchhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD----LGHSDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~ 580 (652)
.|...+..+.+.|++++|...|+..++..+.-. +..+..++.+|...|++++|...|+.+... +..+..+..++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg 224 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG 224 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence 344444444566888888888888877665422 456677888888888888888888887652 23455666778
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++...|+.++|...|+++.+..|+..
T Consensus 225 ~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 225 VIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 888888888888888888888888764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0028 Score=54.80 Aligned_cols=94 Identities=10% Similarity=0.021 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
...+..+...+...|++++|...|++..+.+..+ ....+..+..++.+.|++++|...+++..+.... +...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHH
Confidence 3457777778888999999999999998753222 2467888889999999999999999999875322 456666777
Q ss_pred HHHHcCCCHHHHHHHHH
Q 006281 513 EGLCQETNLQAAFEVFN 529 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~ 529 (652)
..+...|+...+..-++
T Consensus 114 ~~~~~~g~~~~a~~~~~ 130 (172)
T PRK02603 114 VIYHKRGEKAEEAGDQD 130 (172)
T ss_pred HHHHHcCChHhHhhCHH
Confidence 77877777655444333
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0034 Score=58.94 Aligned_cols=259 Identities=11% Similarity=-0.003 Sum_probs=156.0
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD-VSFYNSLMEACCREDLLR 452 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~g~~~ 452 (652)
.+.+..++..|+..+....+..+. +..-|..-...+...|++++|.--.+.-.+. +|. ...+...-.++...++..
T Consensus 58 ~~yk~k~Y~nal~~yt~Ai~~~pd-~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~i 134 (486)
T KOG0550|consen 58 AFYKQKTYGNALKNYTFAIDMCPD-NASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDLI 134 (486)
T ss_pred hHHHHhhHHHHHHHHHHHHHhCcc-chhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHHH
Confidence 355566666677777766666544 4445555555566666666666555443332 111 111111222222222222
Q ss_pred hHHH---------------HHHHHHHcC-CCCCHHHHHHHH-HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH--
Q 006281 453 PAKK---------------LWDQMFASG-CSGNLKTYNILI-SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE-- 513 (652)
Q Consensus 453 ~a~~---------------~~~~~~~~~-~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~-- 513 (652)
+|.+ .++...... -+|...+|..+- .++.-.|++++|...--..++... ...+..+++
T Consensus 135 ~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~ 211 (486)
T KOG0550|consen 135 EAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGL 211 (486)
T ss_pred HHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc---chhHHHHhccc
Confidence 2222 222222221 124445555443 456678999999888777665422 223333444
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHH-----------HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch----hHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARS-----------ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD----SHV 577 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~----~~~ 577 (652)
++...++.+.|...|++.+..++..... .+..-..-..+.|++.+|.+.+.+... +|.+.. .|.
T Consensus 212 ~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 212 CLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 3446788999999999988877532211 122224446788999999999999877 555443 344
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
..+.+..+.|+.++|+.--+.+.+.++.-..... .-+.++...++|++|.+-+++..+...
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~iD~syikall-~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKIDSSYIKALL-RRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5666778899999999999999999886643333 366667788999999999998877643
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0016 Score=53.62 Aligned_cols=117 Identities=10% Similarity=0.005 Sum_probs=81.1
Q ss_pred CHHHHHHHHHHHHHCCCCCCH------hhH---HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC
Q 006281 485 EIEGALRLFHNMLEKGVAPDA------TTY---TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH 555 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~------~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 555 (652)
+.++-.+.+.+....|-.+-. .+. -...--+...|++++|..+|.-+...++. +...+..|..++...++
T Consensus 8 ~~~~~~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~ 86 (165)
T PRK15331 8 SEERVAEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQ 86 (165)
T ss_pred hHHHHHHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHH
Confidence 344445555555555654421 111 12233345788888888888877777765 67777788888888888
Q ss_pred HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 556 FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 556 ~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+++|+..+..... +..++.+....+.++...|+.+.|+..+..+.+.
T Consensus 87 y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~ 134 (165)
T PRK15331 87 FQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhC
Confidence 8888888877655 4566777778888888888888888888888773
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.59 E-value=9.7e-05 Score=42.47 Aligned_cols=29 Identities=41% Similarity=0.654 Sum_probs=17.6
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRG 184 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 184 (652)
+||.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45666666666666666666666665554
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0002 Score=50.72 Aligned_cols=55 Identities=15% Similarity=0.270 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 552 RRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.|++++|+++++++.. +|.+...+..++.+|.+.|++++|.++++++...+|+.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 44556666666665544 45555555566666666666666666666666655553
|
... |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0019 Score=60.60 Aligned_cols=134 Identities=12% Similarity=0.067 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
.+|..++....+.+..+.|..+|.+..+.+. .+...|...... +...++.+.|.++|+..++.-.. +...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~-~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPS-DPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 4688888988898899999999999985432 234445544444 33357777899999998887554 88899999999
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCc----hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHS----DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.+.|+.+.|..+|++.....+.. ..|..++.--.+.|+.+.+.++.+++.+.-|..
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999998753333 367788888889999999999999999887764
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0028 Score=64.64 Aligned_cols=135 Identities=8% Similarity=-0.074 Sum_probs=100.9
Q ss_pred CCCCCHhhHHHHHHHHHc--C---CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------CCHHHHHHHHHHh
Q 006281 500 GVAPDATTYTSLLEGLCQ--E---TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR--------GHFLVATKLLRGL 566 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~A~~~~~~~ 566 (652)
+...+...|..++++... . ++.+.|..+|+++++.++. ....+..+..++... +++..+.+..++.
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a 410 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI 410 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence 456688889988887543 2 2377999999999999877 556666655554332 1234455555554
Q ss_pred hh---CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 567 SS---DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 567 ~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.. ++..+..+..++-.....|++++|...++++.+.+|+ ...|..++..+...|+.++|.+.+++....
T Consensus 411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS--WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 33 4555667888888888889999999999999999985 456666999999999999999999987654
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.01 Score=56.13 Aligned_cols=91 Identities=13% Similarity=0.067 Sum_probs=44.3
Q ss_pred HHHHcc-CCHHHHHHHHHHHhh----CCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCC-----hh-hHH
Q 006281 234 HGFCKG-KRVEEAFKVLDELRI----RECKPD--FIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPR-----TN-DYR 300 (652)
Q Consensus 234 ~~~~~~-g~~~~A~~~~~~m~~----~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~-----~~-~~~ 300 (652)
..|-.. |++++|.+.|++..+ .+ .+. ...+..+...+.+.|++++|.++|++........+ .. .|.
T Consensus 122 ~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l 200 (282)
T PF14938_consen 122 EIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFL 200 (282)
T ss_dssp HHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHH
Confidence 345555 677777776665533 12 111 22345556667777777777777777655432211 11 112
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHcC
Q 006281 301 EFILGLIVERRICEAKELGEVIVSG 325 (652)
Q Consensus 301 ~ll~~~~~~~~~~~a~~~~~~~~~~ 325 (652)
..+-++...||...|...++.....
T Consensus 201 ~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 201 KAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 2222444456666666666665543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00027 Score=50.02 Aligned_cols=53 Identities=15% Similarity=0.227 Sum_probs=39.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...|++++|+++|++++...+. +..++..++.+|.+.|++++|.++++++...
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3567778888888877777766 6667777788888888888888888877764
|
... |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.14 Score=51.87 Aligned_cols=174 Identities=14% Similarity=-0.029 Sum_probs=94.3
Q ss_pred ccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhC-CCCC--------ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCc
Q 006281 116 TLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFN-CEDI--------GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVE 186 (652)
Q Consensus 116 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 186 (652)
.|-+..|..|.......-.++.|+..|-+.... |++. +...-.+=+. +-.|++++|+++|-+|..+++
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 477888888887777666777777766554332 2211 0001111112 224788889888888776653
Q ss_pred cCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc---hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHH
Q 006281 187 FSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING---SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIA 263 (652)
Q Consensus 187 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 263 (652)
.+..+.+.||+-.+.++++.- |...+| ..+++.+.+.+.....+++|.+.+..-.. .
T Consensus 766 --------Aielr~klgDwfrV~qL~r~g----~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~-- 825 (1189)
T KOG2041|consen 766 --------AIELRKKLGDWFRVYQLIRNG----GSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T-- 825 (1189)
T ss_pred --------hHHHHHhhhhHHHHHHHHHcc----CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence 455666778877777666542 222222 34566677777777777777777665322 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 006281 264 YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKEL 318 (652)
Q Consensus 264 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 318 (652)
...+.++.+..++++-+.+.+.+. -+......+...+.+.|.-++|.+.
T Consensus 826 -e~~~ecly~le~f~~LE~la~~Lp-----e~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 826 -ENQIECLYRLELFGELEVLARTLP-----EDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred -HhHHHHHHHHHhhhhHHHHHHhcC-----cccchHHHHHHHHHhhchHHHHHHH
Confidence 123445555555554444433321 2223333444444555554444443
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.027 Score=51.53 Aligned_cols=58 Identities=2% Similarity=-0.014 Sum_probs=39.3
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.++.-|.+.|.+..|+.-++.+.+.-|+.+ ......++.+|...|..++|.+..+.+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 566667777888888888888877766553 2223336677777888888777666543
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0035 Score=53.97 Aligned_cols=95 Identities=13% Similarity=0.099 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
...|..+...+...|++++|+..|++.......| ...++..+...+...|++++|...+++++...+. ....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~-~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPF-LPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 4455666666667777777777777776543222 1235666777777777777777777777665543 334455555
Q ss_pred HHHH-------hcCCHHHHHHHHHH
Q 006281 548 ISLC-------RRGHFLVATKLLRG 565 (652)
Q Consensus 548 ~~~~-------~~g~~~~A~~~~~~ 565 (652)
..+. ..|++++|...+++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHH
Confidence 5555 66776655554443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.016 Score=47.87 Aligned_cols=88 Identities=9% Similarity=-0.031 Sum_probs=53.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
+...|++++|..+|+-+.-.++. +..-|..|..++-..+++++|+..|..+...+.. |+..+.....++...|+.+.|
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A 124 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA 124 (165)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence 34567777777777766654433 3444555555666666777777777665554432 444455566666777777777
Q ss_pred HHHHHHhhhC
Q 006281 560 TKLLRGLSSD 569 (652)
Q Consensus 560 ~~~~~~~~~~ 569 (652)
+..|+.....
T Consensus 125 ~~~f~~a~~~ 134 (165)
T PRK15331 125 RQCFELVNER 134 (165)
T ss_pred HHHHHHHHhC
Confidence 7776666654
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.094 Score=47.99 Aligned_cols=177 Identities=7% Similarity=-0.038 Sum_probs=94.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhH---HHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSSVY---RFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (652)
.....+...|+++.|.+.|+.+.... +-+.... -.+..++.+.++++.|...+++..+..+......|-..+.+.+
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~ 115 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLT 115 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHh
Confidence 34445556788888888888887754 2222222 3455667788888888888888776533322223333333322
Q ss_pred h--c---------------CC---hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCc
Q 006281 166 S--D---------------GY---IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMING 225 (652)
Q Consensus 166 ~--~---------------~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 225 (652)
. . .+ ...|+..|+++.+. -|++ .-..+|...+..+... -
T Consensus 116 ~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~------l 174 (243)
T PRK10866 116 NMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR------L 174 (243)
T ss_pred hhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH------H
Confidence 1 1 01 12344444444443 2222 1122333322222221 0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
...-..+...|.+.|.+..|..-|+.+.+. +.+........+..+|...|..++|..+...+
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l 238 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKII 238 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 011113556677778888787777777764 22333445566777777777777777665544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0022 Score=59.03 Aligned_cols=96 Identities=5% Similarity=-0.057 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc---HHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLKSLADAREVEMAIEHIKWIQESSPTML---QEISAE 613 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~ 613 (652)
..|......+.+.|++++|+..|+.+.. .|.+ +.++..++.+|...|++++|+..++.+.+..|+.+ ...+.
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k- 222 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK- 222 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH-
Confidence 3455555555677999999999999887 4443 36888999999999999999999999998877652 33333
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHc
Q 006281 614 LFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 614 l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.++...|++++|.++++++.+.
T Consensus 223 lg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 223 VGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH
Confidence 788888999999999999988765
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0068 Score=47.86 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=34.8
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CC---CchhHHHHHHHHhcccc
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD-LG---HSDSHVILLKSLADARE 588 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~ 588 (652)
+-..|+.++|+.+|++.+..|.... ...+-.+...+...|++++|..++++.... |. .......++.++...|+
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~gr 90 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLGR 90 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCCC
Confidence 3344444444444444444443321 122333444444445555555444444332 21 11222233334444455
Q ss_pred HHHHHHHHHH
Q 006281 589 VEMAIEHIKW 598 (652)
Q Consensus 589 ~~~A~~~~~~ 598 (652)
.++|++.+-.
T Consensus 91 ~~eAl~~~l~ 100 (120)
T PF12688_consen 91 PKEALEWLLE 100 (120)
T ss_pred HHHHHHHHHH
Confidence 5544444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.00096 Score=47.95 Aligned_cols=60 Identities=17% Similarity=0.119 Sum_probs=46.8
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|.+.+++++|.++++.+.. +|.++..+...+.++.+.|++++|.+.++++.+..|+..
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 467777888888888888776 666777777888888888888888888888888877663
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.031 Score=50.69 Aligned_cols=154 Identities=17% Similarity=0.142 Sum_probs=113.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (652)
......|++.+|..+|....+.... +...-..++.+|...|+.+.|..++..+..............-+..+.+.....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 3456788999999999988876433 455667788899999999999999987554433322223344566777778888
Q ss_pred HHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 558 VATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 558 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
+...+-.+...+|.+...-..++..+...|+.+.|.+++-.+..++-.. ....-..+++.+...|..+.+...++
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~R 296 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYR 296 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888899999999999999999999999999988774332 23344458888888776555544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0037 Score=53.78 Aligned_cols=107 Identities=12% Similarity=0.186 Sum_probs=77.0
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 006281 79 NFTHSPLSYHSILKSLS-----LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153 (652)
Q Consensus 79 ~~~~~~~~~~~ll~~~~-----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 153 (652)
+-..+..+|..+++.+. ++|..+-....+..|.+.|+..|..+|+.|++.+=+. .+- -..+|+.+
T Consensus 42 ~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg-~fv-p~n~fQ~~-------- 111 (228)
T PF06239_consen 42 GQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKG-KFV-PRNFFQAE-------- 111 (228)
T ss_pred hccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCC-Ccc-cccHHHHH--------
Confidence 33457888888888886 4577888888999999999999999999999987652 221 11122221
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 204 (652)
..-| -.+-+-|++++++|...|+-||..|+..+++.+++.+.
T Consensus 112 -------F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 -------FMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -------hccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1111 12456688888888888888888888888888877654
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.005 Score=52.99 Aligned_cols=103 Identities=20% Similarity=0.407 Sum_probs=63.8
Q ss_pred CHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006281 399 DMESYNVMVSFLCT-----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~-----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 473 (652)
+..+|..+++.|.+ .|..+-....++.|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+--
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~---------- 113 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM---------- 113 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc----------
Confidence 55666666666654 36677777777888888888788888888877654 2221 1111111110
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
-| -.+.+-|++++++|...|+.||..++..+++.+++.+.
T Consensus 114 -----hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 114 -----HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred -----cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11 12345577777777777777777777777777765543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.3 Score=49.68 Aligned_cols=204 Identities=11% Similarity=0.024 Sum_probs=120.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhC-CCc--------cCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCC
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVN-KIT--------LDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDI 152 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~--------~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~ 152 (652)
|-+..|..+.......-.++.|+..|-+.... |+. .+.....+=|.+ --|++++|.++|-.+.++.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~--~~g~feeaek~yld~drrD--- 764 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISA--FYGEFEEAEKLYLDADRRD--- 764 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhh--hhcchhHhhhhhhccchhh---
Confidence 55677877777666777777777776655432 111 111122222222 2488999999988886542
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
.-+..+.+.|++-.+.+++..=-.. +-+.-...|+.+-..++....+++|.+.+...... ..
T Consensus 765 ------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~-----------e~ 827 (1189)
T KOG2041|consen 765 ------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT-----------EN 827 (1189)
T ss_pred ------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch-----------Hh
Confidence 2355666777776666665431100 00111245666666677777777777777654432 11
Q ss_pred HHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCC
Q 006281 232 IIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERR 311 (652)
Q Consensus 232 l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~ 311 (652)
.+.++.+..++++-+.+-..+.+ |......+...+.+.|.-++|.+.+-+. +. | ...+..|...++
T Consensus 828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~-p-----kaAv~tCv~LnQ 893 (1189)
T KOG2041|consen 828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---SL-P-----KAAVHTCVELNQ 893 (1189)
T ss_pred HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---cC-c-----HHHHHHHHHHHH
Confidence 45566666666665555555443 5666777888888888888887766332 11 1 245667777788
Q ss_pred HHHHHHHHHH
Q 006281 312 ICEAKELGEV 321 (652)
Q Consensus 312 ~~~a~~~~~~ 321 (652)
+.+|.++.+.
T Consensus 894 W~~avelaq~ 903 (1189)
T KOG2041|consen 894 WGEAVELAQR 903 (1189)
T ss_pred HHHHHHHHHh
Confidence 8888776544
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.077 Score=47.23 Aligned_cols=50 Identities=12% Similarity=0.116 Sum_probs=29.7
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHH--HHHHHHHHhhcCCCCchH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQE--ISAELFASLSSSSYPEPI 627 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~~~a 627 (652)
.++.-|.+.|.+..|+.-++.+.+.-|+.... ....++.+|.+.|..+.+
T Consensus 146 ~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 146 YIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence 56666777777777777777777776665322 223366666666666533
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0053 Score=48.50 Aligned_cols=93 Identities=16% Similarity=0.035 Sum_probs=73.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhCCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--cHHHHHHHHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSSDLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--LQEISAELFA 616 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~ 616 (652)
...+..++-..|+.++|+.++++....... ...+..++..+...|++++|+.++++.....|+. ...+...+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHH
Confidence 345677888999999999999999874322 2356789999999999999999999999987762 1233333677
Q ss_pred HhhcCCCCchHHHHHHHHH
Q 006281 617 SLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 617 ~~~~~g~~~~a~~~~~~~~ 635 (652)
++...|+.++|.+.+-...
T Consensus 84 ~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 8889999999998886544
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.24 Score=47.76 Aligned_cols=193 Identities=10% Similarity=0.038 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHH-------HHHHHHH----hcCCHHHHHHHHHHHHHCCCCCC
Q 006281 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYN-------ILISKFS----EVGEIEGALRLFHNMLEKGVAPD 504 (652)
Q Consensus 436 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~ 504 (652)
.+|..++....+.++...|.+.+.-+... .|+...-. .+-+..+ ..-+..+-+.+|++....++. .
T Consensus 299 ~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiD-r 375 (549)
T PF07079_consen 299 DRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDID-R 375 (549)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhccc-H
Confidence 45667777777777777777777766653 33332111 1112222 112233445566666554332 1
Q ss_pred HhhHHHHHH---HHHcCCC-HHHHHHHHHHhhhCCC---CccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhC---CC
Q 006281 505 ATTYTSLLE---GLCQETN-LQAAFEVFNKSVNHDV---MLARSILSTFMISLCRRG---HFLVATKLLRGLSSD---LG 571 (652)
Q Consensus 505 ~~~~~~l~~---~~~~~g~-~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~ 571 (652)
......|+. -+.+.|. -++|+.+++.++.-.. ..-..++..+=.+|.+.= .+.+-.++-+-+.+. +.
T Consensus 376 qQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i 455 (549)
T PF07079_consen 376 QQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPI 455 (549)
T ss_pred HHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcc
Confidence 222223332 3455555 7778888877655322 111222222222333221 122222222212111 11
Q ss_pred ---CchhHHHHHHH--HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 572 ---HSDSHVILLKS--LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 572 ---~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
+.+.-+.|+.+ +..+|++.++.-.-..+.+..|+ +..++.++-.+....++++|++++.+
T Consensus 456 ~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS--~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 456 TISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS--PQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred cccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 11122233333 35678888888887788888873 46666677777788888888888774
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0076 Score=56.94 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.++..+..++.+.+++.+|++..++... ++.+.-+...-+.++...|+++.|+..|+++.+..|++. .+-+.|..+-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk-a~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNK-AARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH-HHHHHHHHHHH
Confidence 3577788888999999999999998877 788888888999999999999999999999999999884 44444666655
Q ss_pred cCCCC-chHHHHHHHHHHc
Q 006281 620 SSSYP-EPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g~~-~~a~~~~~~~~~~ 637 (652)
+..++ ++..++|..|-.+
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 54444 4447778877765
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.02 Score=53.92 Aligned_cols=131 Identities=12% Similarity=0.070 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHH----HHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCccH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNM----LEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----D-VMLAR 540 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m----~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~ 540 (652)
..|..|...|.-.|+++.|+..-+.= .+.|-+. ....+..+.+++.-.|+++.|.+.|+..+.. + -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 35666666777778999988765432 2333221 2346777888888899999999999875432 2 11233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHh-------hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGL-------SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
....+|...|.-...+.+|+.++.+- ....+...++.+|+.++...|+.++|+...+..++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 44556888888888899998887642 22344566888999999999999999888777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.076 Score=53.17 Aligned_cols=232 Identities=13% Similarity=0.082 Sum_probs=102.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006281 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339 (652)
Q Consensus 260 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (652)
-...+.+-+..|...|.+++|..+- ++-.....|.-+.......=+++-|.+.+..+.+.
T Consensus 555 ~evp~~~~m~q~Ieag~f~ea~~ia------clgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl-------------- 614 (1081)
T KOG1538|consen 555 VEVPQSAPMYQYIERGLFKEAYQIA------CLGVTDTDWRELAMEALEALDFETARKAYIRVRDL-------------- 614 (1081)
T ss_pred ccccccccchhhhhccchhhhhccc------ccceecchHHHHHHHHHhhhhhHHHHHHHHHHhcc--------------
Confidence 3344455555667777777765431 11112223333333333333444444444333221
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC----CcCHHHHHHHHHHHHhcCC
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY----FTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~ 415 (652)
.+-+-+.-++++.++|-.|+...... .++-.|++.+|.++|.+--..+- ..|...| -..+-|...|.
T Consensus 615 -----~~L~li~EL~~~k~rge~P~~iLlA~---~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMF-D~aQE~~~~g~ 685 (1081)
T KOG1538|consen 615 -----RYLELISELEERKKRGETPNDLLLAD---VFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMF-DYAQEFLGSGD 685 (1081)
T ss_pred -----HHHHHHHHHHHHHhcCCCchHHHHHH---HHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHH-HHHHHHhhcCC
Confidence 22233344666777777777655443 34556777777777765322110 0011111 11233334444
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH------HHHHcCC---CCCHHHHHHHHHHHHhcCCH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD------QMFASGC---SGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~------~~~~~~~---~~~~~~~~~l~~~~~~~g~~ 486 (652)
.++-..+.++--+.. -+..--.+....+...|+.++|..+.- -+.+-+- ..+..+...+..-+.+...+
T Consensus 686 ~~eKKmL~RKRA~WA--r~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~ 763 (1081)
T KOG1538|consen 686 PKEKKMLIRKRADWA--RNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSP 763 (1081)
T ss_pred hHHHHHHHHHHHHHh--hhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhcccc
Confidence 433333332211110 000001122333444555555554421 1111111 12223333333344445556
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
.-|.++|..|-+. .++++.....+++++|..+-++.
T Consensus 764 gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~h 799 (1081)
T KOG1538|consen 764 GLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKH 799 (1081)
T ss_pred chHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhC
Confidence 6666666665421 24555666677777777776654
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.044 Score=53.42 Aligned_cols=110 Identities=13% Similarity=0.032 Sum_probs=72.4
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
+..+|.++.+++++.+.. |+.....+..++.-.|+++.|..+|+++.. +|..+..+...++.+.-.|+.++|.+.+++
T Consensus 319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455677777777777765 666777777776777777777777777766 666667777777777777777777777777
Q ss_pred HHhcCCCCcHH-HHHHHHHHhhcCCCCchHHHHH
Q 006281 599 IQESSPTMLQE-ISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 599 ~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+.+.+|.-... +....++.|+..+ .++|..++
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCc-hhhhHHHH
Confidence 77777754322 2233344555444 34444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.3 Score=47.03 Aligned_cols=166 Identities=19% Similarity=0.079 Sum_probs=81.4
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFASG---CSGNLKTYNILISKFSE---VGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
.++-+|....+++..+++.+.+...- +..+...--...-++.+ .|+.++|++++..+......++..+|..+.+
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 33444555556666666666555431 11111222233334444 5666666666666444444455555555554
Q ss_pred HHHc---------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH----HHHHHHHHHh----hhC---CCCc
Q 006281 514 GLCQ---------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF----LVATKLLRGL----SSD---LGHS 573 (652)
Q Consensus 514 ~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----~~A~~~~~~~----~~~---~~~~ 573 (652)
.|-. ....++|+..|.+.-+.. ++...=-.++..+...|.. .+..++.-++ .+. ....
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~ 303 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQ 303 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccc
Confidence 4421 112566777776654443 2211111122222233321 1222322111 111 1122
Q ss_pred hhHH--HHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 574 DSHV--ILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 574 ~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|. +++.++.-.|++++|.+.++++....|..+
T Consensus 304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 2332 788888889999999999999998877664
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.26 Score=43.81 Aligned_cols=55 Identities=9% Similarity=0.099 Sum_probs=24.5
Q ss_pred HHhcCChHHHHHHHHHHHhCCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006281 375 LCKRNKSDELVEVYKVLSANDYF--TDMESYNVMVSFLCTSGRLREAYGVIQEMKRK 429 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~ 429 (652)
+...|++++|...|+.+...-+. --....-.++.++.+.|+++.|...++++.+.
T Consensus 15 ~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 15 ALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444555555555554433111 01123334455555566666666666655544
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.27 Score=43.70 Aligned_cols=150 Identities=10% Similarity=0.103 Sum_probs=111.9
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
.+...+.|++-.. ...+.++.++...|.+.-...++++.++.....++.....|.+.-.+.||.+.|...|++
T Consensus 165 ~ESsv~lW~KRl~-------~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~ 237 (366)
T KOG2796|consen 165 EESSIRLWRKRLG-------RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQD 237 (366)
T ss_pred hhhHHHHHHHHHH-------HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3555666654432 345567777778888888999999999876666788888888888899999999999996
Q ss_pred hhhCC-----CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 531 SVNHD-----VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 531 ~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
..+.. ......+.......+.-.+++.+|...+.+++. ++.++...+.-+-++...|+...|++.++++.+..|
T Consensus 238 vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P 317 (366)
T KOG2796|consen 238 VEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDP 317 (366)
T ss_pred HHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 54432 222333444445556677889999999988887 666666666666777778999999999999999988
Q ss_pred CCc
Q 006281 605 TML 607 (652)
Q Consensus 605 ~~~ 607 (652)
...
T Consensus 318 ~~~ 320 (366)
T KOG2796|consen 318 RHY 320 (366)
T ss_pred ccc
Confidence 763
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.45 Score=45.99 Aligned_cols=84 Identities=11% Similarity=0.073 Sum_probs=46.2
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccC------HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH--H
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLD------SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVL--A 165 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~--~ 165 (652)
+-+++++.+++.+|.++.+.. .-+ ....+.++++|... +.+.....+....+. .| ...|-.|..++ -
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAY 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHH
Confidence 346788888888888776542 222 22335666676544 344444444444333 11 33454554443 3
Q ss_pred hcCChhhHHHHHHHHHh
Q 006281 166 SDGYIDNALKMFDEMSH 182 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~ 182 (652)
+.+.+.+|.+.+..-.+
T Consensus 91 ~~k~~~kal~~ls~w~~ 107 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKE 107 (549)
T ss_pred HhhhHHHHHHHHHHHHh
Confidence 55677777777665543
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0026 Score=45.61 Aligned_cols=59 Identities=17% Similarity=-0.019 Sum_probs=51.7
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
..+|.+.+++++|++.++.+...+|......+. .+.++...|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~-~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQ-RARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHH-HHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 467889999999999999999999998555554 99999999999999999999887643
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.44 Score=45.45 Aligned_cols=109 Identities=13% Similarity=0.163 Sum_probs=74.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
+.+..+.-+...|+...|.++-.+.. + ||...|...+.+++..++|++-..+... +-++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk---v-~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK---V-PDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC---C-cHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHH
Confidence 44455556667788777777765552 2 5778888888888888888776665432 114477888888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 495 (652)
+.|+..+|..++..+ .+..-+..|.+.|++.+|.+.--+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence 888888888777662 124456777888888877665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.54 Score=47.48 Aligned_cols=87 Identities=13% Similarity=0.042 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-------
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT------- 506 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~------- 506 (652)
+..+...+...+.+...+.-|.++|..|-.. ..+++.....++|++|..+-+...+. .||+.
T Consensus 746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL 814 (1081)
T KOG1538|consen 746 EREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL 814 (1081)
T ss_pred hhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence 3344444445555666666777777766432 23556666777777777776665432 33321
Q ss_pred ----hHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 507 ----TYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 507 ----~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
-|.-.-.+|.++|+..+|.++++++
T Consensus 815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQL 843 (1081)
T KOG1538|consen 815 AENDRFEEAQKAFHKAGRQREAVQVLEQL 843 (1081)
T ss_pred hhhhhHHHHHHHHHHhcchHHHHHHHHHh
Confidence 1122223455566666666666654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.33 Score=43.21 Aligned_cols=131 Identities=12% Similarity=0.045 Sum_probs=87.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH-----
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL----- 512 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~----- 512 (652)
-+.++..+.-.|.+.-...++.+.++..-+.++.....|.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 345566666667777777777777776545566677777777777888888888887666433333433333332
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
..|.-++++..|...+.+++..+.. ++...+.-+-++.-.|+..+|++.++.|.+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3455667888888888888877765 5555555555555568888888888888773
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.02 Score=51.40 Aligned_cols=103 Identities=14% Similarity=0.094 Sum_probs=75.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----CCCCchhHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS----DLGHSDSHVILL 580 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~l~ 580 (652)
.|+.-+.. .+.|++..|.+.|...++..+. ..+..+..|..++...|++++|..+|..+.+ .+..++...-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 46655544 4567788888888887776543 1244566688888888888888888877755 344556778888
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
.+..+.|+.++|-..|+++.+..|+.....
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA~ 252 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAAK 252 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHHH
Confidence 888888888888888888888888875443
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.84 Score=47.16 Aligned_cols=114 Identities=15% Similarity=0.112 Sum_probs=79.7
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.-..-+.+-.+.-+...|+...|.++-.+..- ||-..|..-+.+++..+++++-.++-+.+. ++.-|.-+
T Consensus 681 ~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki----pdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PF 750 (829)
T KOG2280|consen 681 SFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI----PDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPF 750 (829)
T ss_pred ccccCcHHHHHHHHHHccchHHHHHHHHhcCC----cchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhH
Confidence 33444555556667777888888887766542 578888888888888888877666555443 24567778
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
..+|.+.|+.++|.+++.+... .. -...+|.+.|++.+|.++--
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~~~~eAad~A~ 794 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVGDVKEAADLAA 794 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhccHHHHHHHHH
Confidence 8888888988888888766431 11 56677888888887776543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.037 Score=46.28 Aligned_cols=68 Identities=22% Similarity=0.338 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 507 (652)
..++..+...|+++.|.++.+.+.... +.+...|..+|.+|...|+..+|.+.|+++.+ .|+.|+..+
T Consensus 66 ~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 66 ERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 334444455555555555555555553 44555555555555555555555555555432 255555443
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.43 Score=43.72 Aligned_cols=226 Identities=17% Similarity=0.060 Sum_probs=115.7
Q ss_pred CChHHHHHHHHHHHhCCCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCChhhHHH
Q 006281 379 NKSDELVEVYKVLSANDYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRK-GLDPDVSFYNSLMEACCREDLLRPAKK 456 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~ll~~~~~~g~~~~a~~ 456 (652)
+....+...+.......... ....+......+...+.+..+...+...... ........+......+...++...+.+
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE 116 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence 44445555555544432221 2345555566666666666666666665542 112234445555555556666666666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 457 LWDQMFASGCSGNLKTYNILIS-KFSEVGEIEGALRLFHNMLEKGV--APDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~m~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
.+.........+ ......... .+...|+++.|...+.+...... ......+......+...++.+.+...+.+...
T Consensus 117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 195 (291)
T COG0457 117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK 195 (291)
T ss_pred HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence 666666543122 122222222 55666666666666666644211 01222333333334455666666666666555
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC-chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH-SDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.........+..+...+...++++.|...+.......+. ...+..+...+...++.+.+...+.+.....|.
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 443313445555666666666666666666665552222 233444444444445566666666666666554
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0048 Score=59.72 Aligned_cols=102 Identities=10% Similarity=-0.035 Sum_probs=76.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch---hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD---SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (652)
+...+..+..+|.+.|++++|+..+++..+ +|.+.. +|..++.+|...|+.++|++.++++.+..+.. +..+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALelsn~~----f~~i 149 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDYNLK----FSTI 149 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcchh----HHHH
Confidence 567799999999999999999999999877 666664 48899999999999999999999999974222 2111
Q ss_pred HH--HhhcCCCCchHHHHHHHHHHcccccCCC
Q 006281 615 FA--SLSSSSYPEPILLLLHALQEKCLDSEIG 644 (652)
Q Consensus 615 ~~--~~~~~g~~~~a~~~~~~~~~~g~~~~~~ 644 (652)
.. .+....+.++..++++.+.+-|.+....
T Consensus 150 ~~DpdL~plR~~pef~eLlee~rk~G~~~g~~ 181 (453)
T PLN03098 150 LNDPDLAPFRASPEFKELQEEARKGGEDIGSS 181 (453)
T ss_pred HhCcchhhhcccHHHHHHHHHHHHhCCccCCc
Confidence 11 1223345567788888888877655433
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.03 Score=46.89 Aligned_cols=57 Identities=18% Similarity=0.183 Sum_probs=32.8
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
.++..+...|++++|+..++++...+|-+ ...+..++.+|...|+..+|.+.++++.
T Consensus 67 ~l~~~~~~~~~~~~a~~~~~~~l~~dP~~-E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 67 RLAEALLEAGDYEEALRLLQRALALDPYD-EEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45555556666666666666666666655 3444446666666666666666665554
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.022 Score=45.96 Aligned_cols=72 Identities=18% Similarity=0.100 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISA 612 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 612 (652)
..+-.-+....+.|++++|++.|+.+....+ ...+...++.+|.+.|++++|+..+++..+.+|.++.+-|-
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa 86 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYA 86 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHH
Confidence 3344455566777888888888888876322 33456678888888888888888888888888877544443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.25 Score=47.58 Aligned_cols=166 Identities=10% Similarity=-0.054 Sum_probs=106.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhCCCCccHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKG---VAPDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNHDVMLARSILST 545 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~---~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 545 (652)
+...++-+|....+++..+++.+.+...- +.-....-..+.-++.+ .|+.++|++++..++.....+++.++..
T Consensus 143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 33455667999999999999999998641 11122223345556677 9999999999999777777778899988
Q ss_pred HHHHHHh---------cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH----HHHHHHH---HH-HHhc---CC
Q 006281 546 FMISLCR---------RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV----EMAIEHI---KW-IQES---SP 604 (652)
Q Consensus 546 l~~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~----~~A~~~~---~~-~~~~---~~ 604 (652)
++..|.. ...+++|+..+.+.-+ ++..-+.. .++..+.-.|.- .+..++. .. +.++ .+
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GI-N~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~ 301 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGI-NAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK 301 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence 8887653 2247889999988766 32221211 222222222321 1222222 11 1122 24
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
......+.+++.+..-.|++++|.+..++|.+..
T Consensus 302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 4445556668888889999999999999988763
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.034 Score=54.17 Aligned_cols=116 Identities=8% Similarity=-0.063 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHhh---hCCCCccHHHHHHHHHHHHh---------cCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc
Q 006281 520 NLQAAFEVFNKSV---NHDVMLARSILSTFMISLCR---------RGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA 586 (652)
Q Consensus 520 ~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 586 (652)
..+.|..+|.+++ ..++. ....|..+..++.. .....+|.++.++..+ ++.++.+...++.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~-~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTL-KTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcc-cHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 3566778888877 43333 23445555444332 2335677888888877 788888999999999989
Q ss_pred ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 587 REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 587 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+++.|...++++...+|+.....+ ..+......|+.++|.+.+++..+.
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~-~~~~~~~~~G~~~~a~~~i~~alrL 401 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYY-YRALVHFHNEKIEEARICIDKSLQL 401 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHH-HHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 9999999999999999999854444 4888889999999999999975443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.68 Score=43.88 Aligned_cols=308 Identities=10% Similarity=0.039 Sum_probs=133.1
Q ss_pred hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHH--HcCCChhHHH
Q 006281 64 HSLALGFFNWASQQPNFTHSPLSYHSILKSLS--LSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSL--IQGKNTQKAF 139 (652)
Q Consensus 64 ~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a~ 139 (652)
|..+.+.|....+..| |..|-..+. -.|+-..|.++-.+..+. +.-|...+..|+.+- .-.|+++.|.
T Consensus 69 P~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar 140 (531)
T COG3898 69 PYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDAR 140 (531)
T ss_pred cHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHH
Confidence 4555666665554444 444444332 345555555554443321 122333333333322 2346666666
Q ss_pred HHHHHHHhCCCCCChhhHHHHHH----HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHH
Q 006281 140 SVFNEVKFNCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEV 215 (652)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 215 (652)
+-|+.|.. ++.+-..=++ .--+.|..+.|.+.-++.-..-.. -...+...+...|..|+++.|+++++.-
T Consensus 141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 66666653 2333222222 223456666666665555443211 2344455566666666666666666655
Q ss_pred HhccCCCCCchhh--HHHHHHHHH---ccCCHHHHHHHHHHHhhCCCCcCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 216 RKRENSMINGSVI--AVLIIHGFC---KGKRVEEAFKVLDELRIRECKPDFIAYR-IVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 216 ~~~~~~~~~~~~~--~~~l~~~~~---~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
... .....+..- ...|+.+-. -..+...|...-.+..+ +.||..--. .-..++.+.|+..++-.+++.+-+
T Consensus 215 ~~~-~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK 291 (531)
T COG3898 215 RAA-KVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWK 291 (531)
T ss_pred HHH-HhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence 543 111111110 011111110 12233444443333322 334433221 223455566666666666666655
Q ss_pred cCCCCChhhHHHHHHHHHccCCHHHHH-HHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 006281 290 LGVAPRTNDYREFILGLIVERRICEAK-ELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTL 368 (652)
Q Consensus 290 ~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 368 (652)
....|+.. .+....+.|+..... +-.+.+.......-...+...-.++..|++..|..--+.... ..|....|
T Consensus 292 ~ePHP~ia----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~ 365 (531)
T COG3898 292 AEPHPDIA----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY 365 (531)
T ss_pred cCCChHHH----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence 54444422 112223333322111 001111111111111122222233444555555444333332 34555556
Q ss_pred HHHHHHHHh-cCChHHHHHHHHHHHhC
Q 006281 369 SNLSKNLCK-RNKSDELVEVYKVLSAN 394 (652)
Q Consensus 369 ~~l~~~~~~-~~~~~~a~~~~~~~~~~ 394 (652)
..+.+.-.. .|+-+++...+.+....
T Consensus 366 lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 366 LLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred HHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 555554433 37777777777776654
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.58 Score=42.83 Aligned_cols=219 Identities=18% Similarity=0.084 Sum_probs=99.2
Q ss_pred CHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLD-PDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGALRL 492 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (652)
....+...+......... .....+......+...+.+..+...+...... ........+..+...+...+++..+...
T Consensus 38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (291)
T COG0457 38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117 (291)
T ss_pred hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence 344444444444433211 01344444455555555555555555555431 1133344444455555555555555555
Q ss_pred HHHHHHCCCCCCHhhHHHHHH-HHHcCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 493 FHNMLEKGVAPDATTYTSLLE-GLCQETNLQAAFEVFNKSVNHDV--MLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+.........+ ......... .+...|+++.+...+++...... ......+......+...++.+++...+......
T Consensus 118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 196 (291)
T COG0457 118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL 196 (291)
T ss_pred HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence 55555432222 111111222 45555556666665555543221 112222333333344555555555555555442
Q ss_pred -CC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 570 -LG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 570 -~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
+. ....+..+...+...++++.|...+..+....|........ +...+...|.++++...+++..
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 263 (291)
T COG0457 197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYN-LALLLLELGRYEEALEALEKAL 263 (291)
T ss_pred CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhh-HHHHHHHcCCHHHHHHHHHHHH
Confidence 22 23444455555555555555665555555555542112222 3333334444555555555443
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.29 Score=48.00 Aligned_cols=104 Identities=14% Similarity=0.067 Sum_probs=60.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--CCCchh-HHHHHHH
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSSD--LGHSDS-HVILLKS 582 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~-~~~l~~~ 582 (652)
+=..+..++.+.|+.++|++.|+++++..+.. ...+...|+.++...+.+.++..++.+-.+. |.+... |...+-.
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk 340 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK 340 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence 33446666667788888888888877655432 3446677788888888888888887776442 222222 2211111
Q ss_pred Hhcccc---------------HHHHHHHHHHHHhcCCCCcHHH
Q 006281 583 LADARE---------------VEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 583 ~~~~g~---------------~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
....|+ -..|.+.+.++.+.+|..+.++
T Consensus 341 aRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~YL 383 (539)
T PF04184_consen 341 ARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPKYL 383 (539)
T ss_pred HHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCchhh
Confidence 111111 1346778888888877665444
|
The molecular function of this protein is uncertain. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.58 Score=41.98 Aligned_cols=84 Identities=10% Similarity=0.057 Sum_probs=50.0
Q ss_pred CCHHHHHHhhhhhhccChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHH
Q 006281 47 LSPSLVARVINPYLLTHHSLALGFFNWASQQPNFTH-SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFI 125 (652)
Q Consensus 47 ~~~~~~~~~l~~~~~~~~~~a~~~f~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 125 (652)
+...+.+..++.+..+++..|.+.|+.+.+++.+.| +..+--.++.++-+.++++.|...+++...........-|-.-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Y 112 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYY 112 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHH
Confidence 344556667777666777777777777765554433 4555556666666777777777777776665422222334444
Q ss_pred HHHHH
Q 006281 126 IPSLI 130 (652)
Q Consensus 126 i~~~~ 130 (652)
|.+++
T Consensus 113 lkgLs 117 (254)
T COG4105 113 LKGLS 117 (254)
T ss_pred HHHHH
Confidence 44433
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0041 Score=45.34 Aligned_cols=25 Identities=8% Similarity=0.010 Sum_probs=12.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
++..+..+|...|++++|+..+++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~a 31 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKA 31 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555443
|
... |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.03 Score=54.43 Aligned_cols=66 Identities=15% Similarity=0.056 Sum_probs=57.8
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR--SILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+...++.+..+|...|++++|+..|+++++.++.... ..|..+..+|...|++++|++.++++.+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5678899999999999999999999999998876322 35889999999999999999999998874
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0074 Score=43.95 Aligned_cols=60 Identities=13% Similarity=0.158 Sum_probs=26.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCC-cc-HHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH----DVM-LA-RSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
+++.+...|...|++++|+..|+++++. +.. |. ..++..+..++...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555554432 100 11 223444444444444444444444443
|
... |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.17 Score=47.09 Aligned_cols=232 Identities=15% Similarity=0.070 Sum_probs=94.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHH----HHhCCC-CcCHHHHHHHHH
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKG--RVPTLSTLSNLSKNLCKRNKSDELVEVYKV----LSANDY-FTDMESYNVMVS 408 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~----~~~~~~-~~~~~~~~~li~ 408 (652)
..+..|...+.++|+..+..-+.+- ...--.++..+..+.+..|.++++...--. ..+..- .--...|-.+.+
T Consensus 12 ~g~~Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar 91 (518)
T KOG1941|consen 12 KGLQLYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLAR 91 (518)
T ss_pred HHHhHhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345566667777777766654331 111223444445555555555554432111 111100 000112333333
Q ss_pred HHHhcCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-----CCCCHHHHHHHHHH
Q 006281 409 FLCTSGRLREAYGVIQEMKRK-GLDPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASG-----CSGNLKTYNILISK 479 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~-~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~ 479 (652)
++.+.-++.+++.+-+.-... |..|. -....++..++...+.++.+++.|+...+-- --.....+..|...
T Consensus 92 ~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgsl 171 (518)
T KOG1941|consen 92 SNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSL 171 (518)
T ss_pred HHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHH
Confidence 333333344444333322211 11110 1122234444445555566666655554320 01112345555555
Q ss_pred HHhcCCHHHHHHHHHHHHH----CCCCCCHhhHH-----HHHHHHHcCCCHHHHHHHHHHhhh----CCCC-ccHHHHHH
Q 006281 480 FSEVGEIEGALRLFHNMLE----KGVAPDATTYT-----SLLEGLCQETNLQAAFEVFNKSVN----HDVM-LARSILST 545 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~----~~~~p~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~ 545 (652)
|.+..++++|.-+.....+ .++.--...|. .+.-++-..|....|.+..++..+ .|-. ........
T Consensus 172 f~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~ 251 (518)
T KOG1941|consen 172 FAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLC 251 (518)
T ss_pred HHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 6666666665555444332 12221111111 122334445555555555554432 2211 11223444
Q ss_pred HHHHHHhcCCHHHHHHHHHHhh
Q 006281 546 FMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+.+.|...|+.+.|..-++.+-
T Consensus 252 ~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 252 FADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHhcccHhHHHHHHHHHH
Confidence 5555555565555555554443
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.3 Score=49.71 Aligned_cols=116 Identities=13% Similarity=-0.093 Sum_probs=53.3
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCC-----CCchhHHHHHHHHhccccHHHHH
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDL-----GHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
.+.+.|.++++.+....|. ..-..-.-.+.+...|++++|++.+++..... ...-.+.-+++.+.-.++|++|.
T Consensus 247 ~~~~~a~~lL~~~~~~yP~-s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPN-SALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 3455555555555544432 22222223344445555666666555433210 01112334555555666666666
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC-------chHHHHHHHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYP-------EPILLLLHALQ 635 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~ 635 (652)
+.+..+.+.+.-.........+-++...|+. ++|.+++++..
T Consensus 326 ~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 326 EYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 6666666544332222222233334455555 55555555443
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.056 Score=48.66 Aligned_cols=94 Identities=14% Similarity=0.133 Sum_probs=77.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhC----CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSSD----LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAEL 614 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l 614 (652)
.|+.-+ .+.+.|++.+|.+.|...... ...+.++.-|+.++...|+++.|...|..+.+..|.. +..++- |
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK-l 221 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK-L 221 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH-H
Confidence 455444 456778899999999887663 3355688899999999999999999999999876655 455566 9
Q ss_pred HHHhhcCCCCchHHHHHHHHHHc
Q 006281 615 FASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 615 ~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+.+..+.|+.++|...|+++.++
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 99999999999999999998876
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.15 Score=46.89 Aligned_cols=149 Identities=13% Similarity=0.068 Sum_probs=93.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHH----HHHHHHcCCCHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTS----LLEGLCQETNLQ 522 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~----l~~~~~~~g~~~ 522 (652)
..|+..+|-..|+++.+. .+.|...+..--.+|.-.|+...-...+++.... ..||...|.. +.-++...|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 456666777777777765 3667777777777777777777777777777643 3444433332 333445677788
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc-----hhHHHHHHHHhccccHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS-----DSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
+|.+.-++.++.+.. |.-...+....+.-.|++.++.++..+-..+=... -.|...+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 888877777776654 54455566666777777887777766654421111 123344555566677777777776
Q ss_pred H
Q 006281 598 W 598 (652)
Q Consensus 598 ~ 598 (652)
.
T Consensus 272 ~ 272 (491)
T KOG2610|consen 272 R 272 (491)
T ss_pred H
Confidence 5
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.061 Score=41.95 Aligned_cols=92 Identities=13% Similarity=0.019 Sum_probs=71.1
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc----hhHHHHHHHHhcccc
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS----DSHVILLKSLADARE 588 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~ 588 (652)
++...|+.+.|++.|.+.+..-++ ..+.|+.-..++.-.|+.++|+.=+++..+ ..+.. .++..-+..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 567788999999999888877666 778888888888888999888888888776 22222 245566777788888
Q ss_pred HHHHHHHHHHHHhcCCCC
Q 006281 589 VEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~ 606 (652)
-+.|..-++.+.+.+...
T Consensus 131 dd~AR~DFe~AA~LGS~F 148 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSKF 148 (175)
T ss_pred hHHHHHhHHHHHHhCCHH
Confidence 888888888888887544
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.093 Score=49.92 Aligned_cols=98 Identities=15% Similarity=0.058 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
.++..+..+|.+.+++..|++..++.+..++. |...+..-..++...|+++.|+..|+++.+ +|.+-.+...++..-.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 35667778888999999999999999988876 777777788899999999999999999888 6767666666666555
Q ss_pred ccccH-HHHHHHHHHHHhcCC
Q 006281 585 DAREV-EMAIEHIKWIQESSP 604 (652)
Q Consensus 585 ~~g~~-~~A~~~~~~~~~~~~ 604 (652)
+..++ ++..++|..|...-+
T Consensus 337 k~~~~~~kekk~y~~mF~k~~ 357 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAKLA 357 (397)
T ss_pred HHHHHHHHHHHHHHHHhhccc
Confidence 54444 444778888776543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.013 Score=36.71 Aligned_cols=34 Identities=9% Similarity=0.056 Sum_probs=25.4
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..+..++.+|...|++++|++.++++.+.+|++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 4566777777777777777777777777777764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.81 Score=40.43 Aligned_cols=17 Identities=12% Similarity=-0.132 Sum_probs=7.7
Q ss_pred HHhccccHHHHHHHHHH
Q 006281 582 SLADAREVEMAIEHIKW 598 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~ 598 (652)
.+....++..|...++.
T Consensus 199 v~L~~~Dyv~aekc~r~ 215 (308)
T KOG1585|consen 199 VYLYAHDYVQAEKCYRD 215 (308)
T ss_pred HHhhHHHHHHHHHHhcc
Confidence 33334444444444444
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.27 Score=45.94 Aligned_cols=229 Identities=12% Similarity=0.067 Sum_probs=133.3
Q ss_pred HHhcCChHHHHHHHHHHHhC--CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH----HHHcCC-CCCHHHHHHHHHHHHh
Q 006281 375 LCKRNKSDELVEVYKVLSAN--DYFTDMESYNVMVSFLCTSGRLREAYGVIQE----MKRKGL-DPDVSFYNSLMEACCR 447 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~----~~~~~~-~p~~~~~~~ll~~~~~ 447 (652)
+....+.++|+..+.+...+ +...-..++..+..+.++.|.+++++..--. ..+..- ..--..|..+.+++-+
T Consensus 16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~ 95 (518)
T KOG1941|consen 16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK 95 (518)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567778888887776654 1111334677778888888888776643221 111100 0012344555555555
Q ss_pred cCChhhHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHhhHHHHHHHHHcC
Q 006281 448 EDLLRPAKKLWDQMFAS-GCSGN---LKTYNILISKFSEVGEIEGALRLFHNMLEKG-----VAPDATTYTSLLEGLCQE 518 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~-----~~p~~~~~~~l~~~~~~~ 518 (652)
..++.+++.+-..-... |..|. -....++..++...+.++++++.|+....-. .......+..|...|.+.
T Consensus 96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l 175 (518)
T KOG1941|consen 96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL 175 (518)
T ss_pred HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence 55666666655544433 22221 1233445666777778888888888776421 111234677788888888
Q ss_pred CCHHHHHHHHHHhhh----CCCCccHHHH-----HHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----chhHHHHHHH
Q 006281 519 TNLQAAFEVFNKSVN----HDVMLARSIL-----STFMISLCRRGHFLVATKLLRGLSS---DLGH----SDSHVILLKS 582 (652)
Q Consensus 519 g~~~~a~~~~~~~~~----~~~~~~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~~l~~~ 582 (652)
.|+++|..+..++.+ .++.--..-| ..+.-++...|.+.+|.+..++..+ ..++ ......++.+
T Consensus 176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI 255 (518)
T KOG1941|consen 176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI 255 (518)
T ss_pred HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 888888877766543 2222111112 2344456677888777777776543 2222 2334478888
Q ss_pred HhccccHHHHHHHHHHHHhcC
Q 006281 583 LADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|...|+.+.|..-|+++....
T Consensus 256 yR~~gd~e~af~rYe~Am~~m 276 (518)
T KOG1941|consen 256 YRSRGDLERAFRRYEQAMGTM 276 (518)
T ss_pred HHhcccHhHHHHHHHHHHHHH
Confidence 888888888888887776654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.08 E-value=2.3 Score=44.59 Aligned_cols=249 Identities=13% Similarity=0.051 Sum_probs=124.6
Q ss_pred hcCChHHHHHHHHHHHh-------CCCCcCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 377 KRNKSDELVEVYKVLSA-------NDYFTDMESYNVMVSFLCTSG-----RLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+.+.|+.+|+...+ .+ .......+..+|.+.. +.+.|..++.+.-..|. |+...+-..+..
T Consensus 261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYE 336 (552)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCC-chHHHHHHHHHH
Confidence 34455555555555544 33 2234555566665532 55667777777776653 243333222222
Q ss_pred HHh-cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 445 CCR-EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS--EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 445 ~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
... ..+...|.++|....+.|. +....+-.++-... ...+...|..++.+..+.| .|...--...+..+.. +++
T Consensus 337 ~g~~~~d~~~A~~yy~~Aa~~G~-~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 337 TGTKERDYRRAFEYYSLAAKAGH-ILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred cCCccccHHHHHHHHHHHHHcCC-hHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 222 2345677777777777662 22222222211111 2346677777777777776 3232222223333333 666
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHH---H-h---cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhcc----ccHH
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISL---C-R---RGHFLVATKLLRGLSSDLGHSDSHVILLKSLADA----REVE 590 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~-~---~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~ 590 (652)
+.+.-.+..+.+.+.......-..+.... . . ..+.+.+...+.+... .+++.....++..|... .+++
T Consensus 414 ~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~a~~~lgd~y~~g~g~~~d~~ 492 (552)
T KOG1550|consen 414 DTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA-QGNADAILKLGDYYYYGLGTGRDPE 492 (552)
T ss_pred cHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccchhHHHHHHHHHHh-ccCHHHHhhhcceeeecCCCCCChH
Confidence 66666666555555431111111111111 0 1 1234455555555444 34455556666666543 3577
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC-C--CCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSS-S--YPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~a~~~~~~~~~~ 637 (652)
.|...|..+...+ ....++ ++..+... | ++..|..++.+..+.
T Consensus 493 ~a~~~y~~a~~~~---~~~~~n-lg~~~e~g~g~~~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 493 KAAAQYARASEQG---AQALFN-LGYMHEHGEGIKVLHLAKRYYDQASEE 538 (552)
T ss_pred HHHHHHHHHHHhh---hHHHhh-hhhHHhcCcCcchhHHHHHHHHHHHhc
Confidence 8888888777776 345555 66655432 1 146666666665543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.05 E-value=1.6 Score=42.39 Aligned_cols=82 Identities=13% Similarity=0.216 Sum_probs=56.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
.|..+|-.+++-+..++..++.++++++|... .+.-+..|..-+.+=....++.....+|.+...... +...|..-+
T Consensus 40 tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l--~ldLW~lYl 116 (660)
T COG5107 40 TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL--NLDLWMLYL 116 (660)
T ss_pred hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc--cHhHHHHHH
Confidence 46777888888888888888888888887653 344556677667666666777777778877766533 455565555
Q ss_pred HHHHh
Q 006281 162 AVLAS 166 (652)
Q Consensus 162 ~~~~~ 166 (652)
..--+
T Consensus 117 ~YIRr 121 (660)
T COG5107 117 EYIRR 121 (660)
T ss_pred HHHHh
Confidence 54433
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.6 Score=42.31 Aligned_cols=76 Identities=5% Similarity=0.088 Sum_probs=48.6
Q ss_pred Hhhhhhh-ccChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcC
Q 006281 54 RVINPYL-LTHHSLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQG 132 (652)
Q Consensus 54 ~~l~~~~-~~~~~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 132 (652)
++++.+- ++..+.....+..+..-..+. +..|..-+..=...+++..++.+|.+..... .+...|...+.--.+.
T Consensus 47 qLiq~~~tq~s~~~~re~yeq~~~pfp~~--~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl~YIRr~ 122 (660)
T COG5107 47 QLIQYLETQESMDAEREMYEQLSSPFPIM--EHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYLEYIRRV 122 (660)
T ss_pred HHHHHHhhhhhHHHHHHHHHHhcCCCccc--cHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHHHHHHhh
Confidence 4444432 234556667777664433333 3456666666667899999999999998864 5577777777655544
Q ss_pred C
Q 006281 133 K 133 (652)
Q Consensus 133 g 133 (652)
+
T Consensus 123 n 123 (660)
T COG5107 123 N 123 (660)
T ss_pred C
Confidence 3
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.11 Score=41.57 Aligned_cols=81 Identities=20% Similarity=0.099 Sum_probs=44.3
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC---------------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNK---------------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
|..++..++.++++.|+.+....+++..-..+ ..|+..+..+++.+|+..|++..|+++.+.+.+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 35677888888888888888888877553221 234444444444444444444444444444432
Q ss_pred -CCCCCChhhHHHHHHH
Q 006281 148 -NCEDIGPEICNSLLAV 163 (652)
Q Consensus 148 -~~~~~~~~~~~~ll~~ 163 (652)
.+++.+..+|..|+.-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEW 97 (126)
T ss_pred HcCCCCCHHHHHHHHHH
Confidence 2333334444444443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.02 E-value=1.5 Score=41.90 Aligned_cols=83 Identities=19% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.|+...|...+.+++..++|++..++-.. + -++..|-.++.+|.+.|+..+|..+...+ . +..-
T Consensus 205 v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~~~~~~~eA~~yI~k~-----~-----~~~r 268 (319)
T PF04840_consen 205 VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACLKYGNKKEASKYIPKI-----P-----DEER 268 (319)
T ss_pred CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHHHCCCHHHHHHHHHhC-----C-----hHHH
Confidence 46888888899999999999988776432 1 25578999999999999999999888872 2 2445
Q ss_pred HHHHHhcCChhhHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQ 460 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~ 460 (652)
+..|.+.|++.+|.+.--+
T Consensus 269 v~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 269 VEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHH
Confidence 6788899999988776443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.12 Score=40.43 Aligned_cols=90 Identities=19% Similarity=0.201 Sum_probs=66.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH---HHHHHHHHHHhcC
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS---ILSTFMISLCRRG 554 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g 554 (652)
-+.+..|+.+.|++.|.+.+..-. -....|+.-..++.-.|+.++|+.-++++++..-.-... .|..-...|...|
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 356788999999999998886532 267789999999999999999999999888754222322 2444455677788
Q ss_pred CHHHHHHHHHHhhh
Q 006281 555 HFLVATKLLRGLSS 568 (652)
Q Consensus 555 ~~~~A~~~~~~~~~ 568 (652)
+.+.|..=|+...+
T Consensus 130 ~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 130 NDDAARADFEAAAQ 143 (175)
T ss_pred chHHHHHhHHHHHH
Confidence 88999888877665
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.97 E-value=1.5 Score=41.37 Aligned_cols=101 Identities=8% Similarity=0.034 Sum_probs=56.6
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRL---REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 402 ~~~~li~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
++..++.+|...+.. ++|..+++.+...... .+.++..-+..+.+.++.+.+.+++.+|...- .-....+..++.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHH
Confidence 556666777766653 4556666666544322 23444445666666778888888888888762 213344444444
Q ss_pred HH---HhcCCHHHHHHHHHHHHHCCCCCCH
Q 006281 479 KF---SEVGEIEGALRLFHNMLEKGVAPDA 505 (652)
Q Consensus 479 ~~---~~~g~~~~A~~~~~~m~~~~~~p~~ 505 (652)
.+ .. .....|...+..+....+.|..
T Consensus 164 ~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 164 HIKQLAE-KSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence 44 33 2334566666666544444444
|
It is also involved in sporulation []. |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.019 Score=35.99 Aligned_cols=39 Identities=21% Similarity=0.141 Sum_probs=24.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILL 580 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~ 580 (652)
++..+...|.+.|++++|+++++++.+ .|.++..+..++
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La 42 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALA 42 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhh
Confidence 455666667777777777777776665 555555555444
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.68 Score=47.20 Aligned_cols=115 Identities=16% Similarity=0.128 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHH-HHHHHcCCCHHHHHHHHHHhhhCC---CCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSL-LEGLCQETNLQAAFEVFNKSVNHD---VMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+.|.++++.+.+. -|+...|... .+.+...|++++|++.|+++.... .....-.+..+...+.-.+++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666643 3444443322 223445566666666666544311 112223344455556666666666
Q ss_pred HHHHHHhhhCCCCchhHH--HHHHHHhccccH-------HHHHHHHHHHH
Q 006281 560 TKLLRGLSSDLGHSDSHV--ILLKSLADAREV-------EMAIEHIKWIQ 600 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~-------~~A~~~~~~~~ 600 (652)
.+.+..+.+...-..++. ..+.++...|+. ++|.++++++.
T Consensus 325 ~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 325 AEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 666666655333333322 222333345555 55555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.82 E-value=1.7 Score=40.93 Aligned_cols=102 Identities=12% Similarity=-0.015 Sum_probs=50.7
Q ss_pred cHHHHHHHHHhcCcH---HHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHH
Q 006281 191 GFGVFIWKFCENAKL---GQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIV 267 (652)
Q Consensus 191 ~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 267 (652)
++..++.++...+.. ++|.++++.+... .++.+.++..-+..+.+.++.+.+.+++.+|... +.-....+..+
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e---~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESE---YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHh---CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 334445555554443 3455555555544 3344445544555666677777777777777765 11122334444
Q ss_pred HHHHHh--cCCHHHHHHHHHHHHhcCCCCCh
Q 006281 268 AEEFKL--MGSVFEREVVLKKKRKLGVAPRT 296 (652)
Q Consensus 268 l~~~~~--~g~~~~a~~~~~~~~~~~~~p~~ 296 (652)
+..+.. ......+...+..+....+.|..
T Consensus 162 l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 444322 12234455555555444444433
|
It is also involved in sporulation []. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.72 Score=40.75 Aligned_cols=55 Identities=15% Similarity=0.051 Sum_probs=31.1
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHcCCC---CCCHHHHHHHHHHHhcCChhHHHHHH
Q 006281 299 YREFILGLIVERRICEAKELGEVIVSGKF---TIDDDVLNALIGSVSSIDPRSAIVFF 353 (652)
Q Consensus 299 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~a~~~~ 353 (652)
|...|-.+.-..++..|...++...+.+- +-+..+...++.+|..||.+++.+++
T Consensus 193 ~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E~~~kvl 250 (308)
T KOG1585|consen 193 YVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 33344445555667777776665433321 22334566677777777777766554
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.16 Score=40.70 Aligned_cols=47 Identities=13% Similarity=0.043 Sum_probs=22.9
Q ss_pred CCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHH
Q 006281 432 DPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILIS 478 (652)
Q Consensus 432 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~ 478 (652)
.|+..+..+++.+|+..|++..|.++.+...+. +++.+...|..|+.
T Consensus 49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~ 96 (126)
T PF12921_consen 49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLE 96 (126)
T ss_pred CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344455555555555555555555555544443 44444444444444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.63 Score=37.75 Aligned_cols=19 Identities=11% Similarity=0.120 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHhcCCCCc
Q 006281 589 VEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~ 607 (652)
...|..-++++...-|+..
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5677777777777777763
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=3.8 Score=43.62 Aligned_cols=232 Identities=9% Similarity=-0.009 Sum_probs=104.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
+...-.....+....|+.++|......+-..|.. .+..++.++..+.+.|...... ++++|...-...+...-..+..
T Consensus 128 ~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g~~-~p~~cd~l~~~~~~~g~lt~~d-~w~R~~~al~~~~~~lA~~l~~ 205 (644)
T PRK11619 128 PVEARCNYYYAKWATGQQQEAWQGAKELWLTGKS-LPNACDKLFSVWQQSGKQDPLA-YLERIRLAMKAGNTGLVTYLAK 205 (644)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCC-CChHHHHHHHHHHHcCCCCHHH-HHHHHHHHHHCCCHHHHHHHHH
Confidence 4444455566666677766665555555444332 4456666666666665543322 2222221111112222222332
Q ss_pred HHHhcCChhhHHHHHHHHHHc---------CCCCCHHHHHHHHHHHH--hcCCHHHHHHHHHHHHHC-CCCCCH--hhHH
Q 006281 444 ACCREDLLRPAKKLWDQMFAS---------GCSGNLKTYNILISKFS--EVGEIEGALRLFHNMLEK-GVAPDA--TTYT 509 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~m~~~-~~~p~~--~~~~ 509 (652)
.+. .+.....+.+..+... .++|+...-..++.++. ...+.+.|..++...... ++.+.. ..+.
T Consensus 206 ~l~--~~~~~~a~a~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~l~Rlar~d~~~A~~~~~~~~~~~~~~~~~~~~~~~ 283 (644)
T PRK11619 206 QLP--ADYQTIASALIKLQNDPNTVETFARTTGPTDFTRQMAAVAFASVARQDAENARLMIPSLVRAQKLNEDQRQELRD 283 (644)
T ss_pred hcC--hhHHHHHHHHHHHHHCHHHHHHHhhccCCChhhHHHHHHHHHHHHHhCHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 221 1111111111111110 11122211122222222 234556677777665432 222211 1233
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~ 588 (652)
.+.......+...++...++...... .+......-+....+.++++.+...+..|+.. ........-+++++...|+
T Consensus 284 ~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~ 361 (644)
T PRK11619 284 IVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGR 361 (644)
T ss_pred HHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCC
Confidence 33333333322445555555433222 23444555555555777777777777777653 2233344466666666777
Q ss_pred HHHHHHHHHHHHh
Q 006281 589 VEMAIEHIKWIQE 601 (652)
Q Consensus 589 ~~~A~~~~~~~~~ 601 (652)
.++|...|+++..
T Consensus 362 ~~~A~~~~~~~a~ 374 (644)
T PRK11619 362 KAEAEEILRQLMQ 374 (644)
T ss_pred HHHHHHHHHHHhc
Confidence 7777777777643
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.63 E-value=2.9 Score=42.33 Aligned_cols=185 Identities=9% Similarity=-0.039 Sum_probs=105.5
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
...+|...+.--.+.|+.+.+.-+|+...-.- ..-...|--.+.-....|+.+-|..++....+-.++-.+.+--.-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~c-A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIPC-ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH-hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 45667777777778888888888887765321 11222444444444555888888777776665543322222111112
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHH---HHHHHHHHCCCCCCHhhHHHHHHH-----
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNL-KTYNILISKFSEVGEIEGAL---RLFHNMLEKGVAPDATTYTSLLEG----- 514 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~---~~~~~m~~~~~~p~~~~~~~l~~~----- 514 (652)
-+-..|+++.|..+++.+...- |+. ..-..-+....+.|+.+.+. +++....+... +..+...+.--
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHH
Confidence 2334578899999988887762 443 22223344555677777776 33333322111 22222222222
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
+.-.++.+.|..++.++....+. +...|..++......+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~~~~-~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDILPD-CKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhcCCc-cHHHHHHHHHHHHhCC
Confidence 23357888888888888776654 6677777777766555
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.60 E-value=3.5 Score=42.94 Aligned_cols=126 Identities=12% Similarity=0.028 Sum_probs=62.1
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC-CC-CcCHHHHHHHHHHH
Q 006281 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR-EC-KPDFIAYRIVAEEF 271 (652)
Q Consensus 194 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-~~-~p~~~~~~~ll~~~ 271 (652)
.+++-+...+.+..|+++-..+... ......++......+.+..+.. -.++++.+.++ +. --...+|..+.+..
T Consensus 442 ~vi~Rl~~r~~Y~vaIQva~~l~~p---~~~~~~Vl~~Wa~~kI~~~d~~-d~~vld~I~~kls~~~~~~iSy~~iA~~A 517 (829)
T KOG2280|consen 442 VVIDRLVDRHLYSVAIQVAKLLNLP---ESQGDRVLLEWARRKIKQSDKM-DEEVLDKIDEKLSAKLTPGISYAAIARRA 517 (829)
T ss_pred hhhHHHHhcchhHHHHHHHHHhCCc---cccccHHHHHHHHHHHhccCcc-chHHHHHHHHHhcccCCCceeHHHHHHHH
Confidence 3455555666666666666665543 1111344444555555443211 11222222211 00 12345666666666
Q ss_pred HhcCCHHHHHHHHHHHHhcC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006281 272 KLMGSVFEREVVLKKKRKLG----VAPRTNDYREFILGLIVERRICEAKELGEVIV 323 (652)
Q Consensus 272 ~~~g~~~~a~~~~~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~ 323 (652)
...|+++-|..+++.-...+ +-.+...+...+.-+...|+.+....++-.+.
T Consensus 518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk 573 (829)
T KOG2280|consen 518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLK 573 (829)
T ss_pred HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHH
Confidence 67777777776665422221 11123345556666677777777666654443
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.51 Score=40.20 Aligned_cols=57 Identities=12% Similarity=-0.091 Sum_probs=24.7
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 547 MISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.......|.+|+|...++......-.+.....-+.++...|+-++|+..|+++.+.+
T Consensus 133 Arvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 133 ARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 333444455555554444443321122222234444444555555555555544443
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.35 Score=40.62 Aligned_cols=116 Identities=10% Similarity=0.013 Sum_probs=62.0
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh---cCC-------HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc--
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCR---RGH-------FLVATKLLRGLSS-DLGHSDSHVILLKSLADAR-- 587 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~-------~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g-- 587 (652)
++.|.+.++.....++. |...+.....++.. ... +++|+.-|+++.. +|....++..++.++...+
T Consensus 7 FE~ark~aea~y~~nP~-DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPL-DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT--HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcH-hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhh
Confidence 34555555555555554 55554444444332 222 3344444444444 6777778888888875543
Q ss_pred ---------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccCCCC
Q 006281 588 ---------EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDSEIGA 645 (652)
Q Consensus 588 ---------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 645 (652)
.+++|.+.++++...+|++. .|+.-+... ++|-++..++.+++.....+.
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne--~Y~ksLe~~------~kap~lh~e~~~~~~~~q~~~ 144 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNE--LYRKSLEMA------AKAPELHMEIHKQGLGQQAMG 144 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-H--HHHHHHHHH------HTHHHHHHHHHHSSS------
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHH------HhhHHHHHHHHHHHhhhhhcc
Confidence 36788888888889999873 333222222 468888888888876665433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.41 E-value=2.1 Score=39.27 Aligned_cols=142 Identities=16% Similarity=0.165 Sum_probs=78.8
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.....|++.+|...|+........ +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....+
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~ 221 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPE 221 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCC
Confidence 345667777777777777665443 3445566777777788888887777776443211111222223344444444444
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHhhHHHHHHHHHcCC
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK--GVAPDATTYTSLLEGLCQET 519 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~l~~~~~~~g 519 (652)
..++-.+.-.. +-|...-..+...+...|+.++|.+.+-.+... |.. |...-..++..+.--|
T Consensus 222 ~~~l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g 286 (304)
T COG3118 222 IQDLQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcC
Confidence 44444444432 335666666677777777777777666555533 333 3334444444444444
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.38 E-value=4.4 Score=42.78 Aligned_cols=180 Identities=9% Similarity=0.052 Sum_probs=105.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHH----HHcCCChhHHHHHHHHHHhCCCCCChhhHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPS----LIQGKNTQKAFSVFNEVKFNCEDIGPEICN 158 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 158 (652)
.......-|..+.+...+..|..+.+. .+ .+......+.+. +.+.|++++|...|-+-... ++| .
T Consensus 333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~---~~--~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s 401 (933)
T KOG2114|consen 333 IEKDLETKLDILFKKNLYKVAINLAKS---QH--LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----S 401 (933)
T ss_pred eeccHHHHHHHHHHhhhHHHHHHHHHh---cC--CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----H
Confidence 344566777777788888888776553 22 333444444433 44678888888877665432 111 2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHc
Q 006281 159 SLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCK 238 (652)
Q Consensus 159 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 238 (652)
.++.-|........-...++.+.+.|+. +...-..|+.+|.+.++.+...++.+... . |....+ ....+..+.+
T Consensus 402 ~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~fd---~e~al~Ilr~ 475 (933)
T KOG2114|consen 402 EVIKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWFFD---VETALEILRK 475 (933)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-cceeee---HHHHHHHHHH
Confidence 3455566666666677777777777764 44555667788888888888777776555 2 222111 1234455556
Q ss_pred cCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 239 GKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 239 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
.+-.++|..+-..... ....... .+-..+++++|++.+..+
T Consensus 476 snyl~~a~~LA~k~~~-----he~vl~i---lle~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 476 SNYLDEAELLATKFKK-----HEWVLDI---LLEDLHNYEEALRYISSL 516 (933)
T ss_pred hChHHHHHHHHHHhcc-----CHHHHHH---HHHHhcCHHHHHHHHhcC
Confidence 6666666655443322 2222222 233457788887777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.68 Score=46.47 Aligned_cols=79 Identities=10% Similarity=-0.018 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHH
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILG 305 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 305 (652)
...|..|.+...++|+++-|++.|.+..+ |..++-.|...|+.+...++.+.....| .++....+
T Consensus 347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~ 411 (443)
T PF04053_consen 347 PEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQA 411 (443)
T ss_dssp HHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHH
Confidence 34555555555555555555555554332 2334444444555544444444444333 23334444
Q ss_pred HHccCCHHHHHHHH
Q 006281 306 LIVERRICEAKELG 319 (652)
Q Consensus 306 ~~~~~~~~~a~~~~ 319 (652)
+.-.|+.+++.+++
T Consensus 412 ~~~lgd~~~cv~lL 425 (443)
T PF04053_consen 412 ALLLGDVEECVDLL 425 (443)
T ss_dssp HHHHT-HHHHHHHH
T ss_pred HHHcCCHHHHHHHH
Confidence 44445555544443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.5 Score=36.27 Aligned_cols=83 Identities=5% Similarity=0.022 Sum_probs=34.5
Q ss_pred HHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc
Q 006281 125 IIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK 204 (652)
Q Consensus 125 li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 204 (652)
++..+...+.......+++.+...+. .++..+|.++..|++.+ .......+.. ..+.+....+++.|.+.+-
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l 84 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAKL 84 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcCc
Confidence 34444444444444444444444432 34444455555554432 1222222221 1123333444444545555
Q ss_pred HHHHHHHHHHH
Q 006281 205 LGQVLSMLDEV 215 (652)
Q Consensus 205 ~~~a~~~~~~~ 215 (652)
++++.-++.++
T Consensus 85 ~~~~~~l~~k~ 95 (140)
T smart00299 85 YEEAVELYKKD 95 (140)
T ss_pred HHHHHHHHHhh
Confidence 55555555443
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.18 E-value=4.2 Score=41.30 Aligned_cols=132 Identities=7% Similarity=-0.071 Sum_probs=64.1
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccH-HHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF-GVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVL 231 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 231 (652)
+-..|+.|+.---...+.+.+..+++.++.. .|-.+.| .....-=.+.|..+.+.++|++.... .|.+...|..
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a---ip~SvdlW~~ 118 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA---IPLSVDLWLS 118 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh---hhhHHHHHHH
Confidence 3445555555444444455566666666543 2332222 11111122346666666666666654 4444555543
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHhhC-CCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006281 232 IIHGFC-KGKRVEEAFKVLDELRIR-ECK-PDFIAYRIVAEEFKLMGSVFEREVVLKKKRK 289 (652)
Q Consensus 232 l~~~~~-~~g~~~~A~~~~~~m~~~-~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 289 (652)
.+..+. ..|+.+...+.|+..... |.. -....|...|..-..++++.....+++..++
T Consensus 119 Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 119 YLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 333222 345555555556555443 211 1233455555555555566666666655554
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=1.5 Score=37.52 Aligned_cols=91 Identities=10% Similarity=0.017 Sum_probs=59.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhCCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSDLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSS 621 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (652)
+...+...|++++|+.-++.....+.+.. .-..|++.....|.+++|+..++.....+.. ......-++++...
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~--~~~~elrGDill~k 172 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWA--AIVAELRGDILLAK 172 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHH--HHHHHHhhhHHHHc
Confidence 34456677777777777776655433322 2235777777778888888777766555432 33445567777788
Q ss_pred CCCchHHHHHHHHHHcc
Q 006281 622 SYPEPILLLLHALQEKC 638 (652)
Q Consensus 622 g~~~~a~~~~~~~~~~g 638 (652)
|+.++|+..|++..+.+
T Consensus 173 g~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 173 GDKQEARAAYEKALESD 189 (207)
T ss_pred CchHHHHHHHHHHHHcc
Confidence 88888888887777664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.4 Score=36.35 Aligned_cols=82 Identities=17% Similarity=0.073 Sum_probs=34.4
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
+..+...+.......+++.+...+. .+....+.++..+..-+....+..+.. ..+......+++.|.+.+.++
T Consensus 14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~ 86 (140)
T smart00299 14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYE 86 (140)
T ss_pred HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHH
Confidence 3333333444444444444444432 333444444444443333333333331 012222333444455555555
Q ss_pred HHHHHHHHH
Q 006281 383 ELVEVYKVL 391 (652)
Q Consensus 383 ~a~~~~~~~ 391 (652)
++..++.++
T Consensus 87 ~~~~l~~k~ 95 (140)
T smart00299 87 EAVELYKKD 95 (140)
T ss_pred HHHHHHHhh
Confidence 555555443
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.045 Score=31.84 Aligned_cols=32 Identities=22% Similarity=0.164 Sum_probs=23.8
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..+..++.++...|++++|++.++++.+.+|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence 35667778888888888888888888877775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.25 Score=41.93 Aligned_cols=92 Identities=14% Similarity=0.088 Sum_probs=46.7
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV 589 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 589 (652)
+.+.|++++|..-|.+++..-+... ...|..-..++.+.+.++.|+.-..+..+ .|....+...-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 3445555555555555544332211 12233344445555555555555555544 333333444445555555666
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006281 590 EMAIEHIKWIQESSPTM 606 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~ 606 (652)
++|++-|+++.+.+|..
T Consensus 185 eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 185 EEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhCcch
Confidence 66666666666666654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.94 E-value=0.019 Score=33.44 Aligned_cols=32 Identities=16% Similarity=0.033 Sum_probs=19.6
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 628 (652)
++++.+.+|++....++ |+..|...|++++|+
T Consensus 2 y~kAie~~P~n~~a~~n-la~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNN-LANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCCCCHHHHHH-HHHHHHHCcCHHhhc
Confidence 45666666766433333 777777777776664
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.93 E-value=7.6 Score=42.95 Aligned_cols=154 Identities=14% Similarity=0.195 Sum_probs=89.8
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH----HHHHHHHHHhcCChhhH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF----YNSLMEACCREDLLRPA 454 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~----~~~ll~~~~~~g~~~~a 454 (652)
++++.|+.-+..+. ...|.-.++.--++|.+.+|+.++. |+... |.+...-+...+.+++|
T Consensus 894 ~ry~~AL~hLs~~~-------~~~~~e~~n~I~kh~Ly~~aL~ly~--------~~~e~~k~i~~~ya~hL~~~~~~~~A 958 (1265)
T KOG1920|consen 894 KRYEDALSHLSECG-------ETYFPECKNYIKKHGLYDEALALYK--------PDSEKQKVIYEAYADHLREELMSDEA 958 (1265)
T ss_pred HHHHHHHHHHHHcC-------ccccHHHHHHHHhcccchhhhheec--------cCHHHHHHHHHHHHHHHHHhccccHH
Confidence 55556655554443 1234444455556677777766654 34443 44444445566777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh--hHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT--TYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
.-.|+..-+. .--+.+|..+|+|.+|+.+..++... -+.. +-..|+.-+...+++-+|-++..+..
T Consensus 959 al~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 959 ALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 7777655321 23466777788888888887776532 1222 22456667777888888887777654
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
.. ....+..|++...+++|.++.....
T Consensus 1027 sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1027 SD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred cC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 32 1223445666667777777665544
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.88 E-value=2.8 Score=37.76 Aligned_cols=60 Identities=15% Similarity=0.058 Sum_probs=29.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 571 (652)
.+-|.+.|.+..|..-++++++.-.. -....+..+..+|...|..++|.+.-+-+..+.+
T Consensus 174 aryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N~p 235 (254)
T COG4105 174 ARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGANYP 235 (254)
T ss_pred HHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhcCC
Confidence 34455555555555555555554221 0122344445555555555555555554444433
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.86 E-value=0.26 Score=44.30 Aligned_cols=105 Identities=16% Similarity=0.281 Sum_probs=66.8
Q ss_pred cCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006281 398 TDMESYNVMVSFLCTS-----GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~-----g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 472 (652)
.|..+|-..+..+... +.++-....++.|.+.|+.-|..+|+.|++.+-+..- .|.. .
T Consensus 65 RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n-v 127 (406)
T KOG3941|consen 65 RDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN-V 127 (406)
T ss_pred ccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-H
Confidence 3666676666665433 4566666777777777777777788777776544321 1111 1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL 521 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 521 (652)
+-...-.|-+ +-+=++.++++|...|+.||..+-..|++++.+.+-.
T Consensus 128 fQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 128 FQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 1111112222 2244788899999999999999988899998877753
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.82 E-value=2 Score=35.82 Aligned_cols=122 Identities=14% Similarity=0.109 Sum_probs=71.8
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHH-HHH--HHHHHHHhcCCH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARS-ILS--TFMISLCRRGHF 556 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~--~l~~~~~~~g~~ 556 (652)
++.+..++|+..|..+.+.|...-+. ............|+...|...|+++-.....|-.. -.. .-...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 35566677777777777665431111 11222334556777888888887765544333322 111 122335567777
Q ss_pred HHHHHHHHHhhh--CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 557 LVATKLLRGLSS--DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 557 ~~A~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
++...-++.+.. +|........|+-+-.+.|++.+|.+.|.++...
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 777777766644 2333345557777777888888888888877764
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.75 E-value=1.5 Score=36.35 Aligned_cols=109 Identities=15% Similarity=-0.074 Sum_probs=54.0
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHH-hccccHHHHHH
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL-ADAREVEMAIE 594 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~ 594 (652)
.+.++.+++..++.-+.-..+. .+..-..-...+.+.|++++|+++++.+....+..+....|...| ...|+. .=..
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~-~Wr~ 98 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDP-SWRR 98 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCCh-HHHH
Confidence 3556777777777766555544 233333334456677777777777777766544444333333333 333332 1222
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
+-.++.+.+++.. . ..|+..+....+...|..
T Consensus 99 ~A~evle~~~d~~-a--~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 99 YADEVLESGADPD-A--RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHhcCCChH-H--HHHHHHHHHhccccchhh
Confidence 2333444444331 1 114455544444444433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.72 E-value=3.7 Score=38.33 Aligned_cols=150 Identities=11% Similarity=0.059 Sum_probs=72.8
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH--H--HHHHHHHHhcCChhh
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF--Y--NSLMEACCREDLLRP 453 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~--~--~~ll~~~~~~g~~~~ 453 (652)
.|+..+|-..++++.+.-+. |...+.-.=.+|.-.|+.+.-...++++... ..||... | ..+.-++...|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45555555555555544322 5555555555666666666666666655533 1222211 1 222233345566666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
|++.-++..+.+ +.|...-.+....+-..|++.++.+...+-.+. +.-.-...|-...-.+...+.++.|+++|+.
T Consensus 194 AEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 666666665544 445555555555555666666666655443321 0000111222222233444666666666653
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.059 Score=31.39 Aligned_cols=32 Identities=19% Similarity=0.125 Sum_probs=24.1
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
..|..++.++...|++++|+..++++.+.+|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667788888888888888888888887775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.63 Score=41.99 Aligned_cols=120 Identities=17% Similarity=0.147 Sum_probs=79.1
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCC
Q 006281 79 NFTHSPLSYHSILKSLSL-----SRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIG 153 (652)
Q Consensus 79 ~~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~ 153 (652)
+-.-|..+|-..+..+.. .+..+-.-..++.|.+.|+..|..+|+.||+.+-+..- . .
T Consensus 62 ~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------i-P 124 (406)
T KOG3941|consen 62 PEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------I-P 124 (406)
T ss_pred cccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------c-c
Confidence 445577778777777753 45666677778999999999999999999887654321 1 1
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcH-HHHHHHHHHHHh
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKL-GQVLSMLDEVRK 217 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~ 217 (652)
..++..+.--|-+ +-+-++.++++|...|+-||..+-..+++++.+.+-. .+..+++-.|.+
T Consensus 125 ~nvfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 125 QNVFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 2222222222222 2355788888888888888888888888888877643 344444444443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=94.52 E-value=2.5 Score=35.61 Aligned_cols=130 Identities=12% Similarity=0.052 Sum_probs=56.1
Q ss_pred HHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCC
Q 006281 142 FNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENS 221 (652)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 221 (652)
++.+...++.|+...|..+++.+.+.|++.. +..+...++-+|+......+-.+. +....+.++--.|.++-
T Consensus 17 irSl~~~~i~~~~~L~~lli~lLi~~~~~~~----L~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkRL-- 88 (167)
T PF07035_consen 17 IRSLNQHNIPVQHELYELLIDLLIRNGQFSQ----LHQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKRL-- 88 (167)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHHh--
Confidence 3344445555555555555555555555332 233333444444444433332211 12222233222222220
Q ss_pred CCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
...+..+++.+...|++-+|.++....... +......++.+..+.++...-..+++-.
T Consensus 89 ----~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff 146 (167)
T PF07035_consen 89 ----GTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFF 146 (167)
T ss_pred ----hhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 012334555666666666666666554221 1122233455555555544444444333
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=94.49 E-value=1.1 Score=36.46 Aligned_cols=68 Identities=19% Similarity=0.123 Sum_probs=40.4
Q ss_pred hhHHHHHHHH---HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch
Q 006281 506 TTYTSLLEGL---CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD 574 (652)
Q Consensus 506 ~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 574 (652)
...+.|++.. ...++++++..+++.+.-..+. ....-..-...+...|++++|.++++++.++.+..+
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 3444444433 3467777777777766555544 222222334456677888888888887777655443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=94.43 E-value=4.5 Score=43.05 Aligned_cols=88 Identities=14% Similarity=0.077 Sum_probs=38.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHh---
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPDVSFYNSLMEACCR--- 447 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~~~~~~~ll~~~~~--- 447 (652)
...+.-.|+++.|++.+-. ......|.+++...+.-| |-+......-..+..... .|...-+..||..|.+
T Consensus 265 f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~---gLL~~~~~~~~~lls~~~~~~~~ln~arLI~~Y~~~F~ 339 (613)
T PF04097_consen 265 FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYY---GLLRVSDSSSAPLLSVDPGDPPPLNFARLIGQYTRSFE 339 (613)
T ss_dssp HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHT---T------------------------HHHHHHHHHHTTT
T ss_pred HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHc---CCCCCCCccccceeeecCCCCCCcCHHHHHHHHHHHHh
Confidence 3445677999999988876 122223444444444332 222221111133322211 1122557778887775
Q ss_pred cCChhhHHHHHHHHHHc
Q 006281 448 EDLLRPAKKLWDQMFAS 464 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~ 464 (652)
..++.+|.+++--+...
T Consensus 340 ~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 340 ITDPREALQYLYLICLF 356 (613)
T ss_dssp TT-HHHHHHHHHGGGGS
T ss_pred ccCHHHHHHHHHHHHHc
Confidence 35677777777766654
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.40 E-value=1.5 Score=38.09 Aligned_cols=60 Identities=25% Similarity=0.292 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
..||.+.--+...|+++.|.+.|+...+.++.-+-...+. .-++.-.|++.-|.+-+.+.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNR-gi~~YY~gR~~LAq~d~~~f 159 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNR-GIALYYGGRYKLAQDDLLAF 159 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcc-ceeeeecCchHhhHHHHHHH
Confidence 3455555555556666666666665555554432222222 11222345555555544443
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=2.6 Score=37.11 Aligned_cols=121 Identities=14% Similarity=-0.002 Sum_probs=62.9
Q ss_pred cCCCHHHHHHHHHHhhhCC-----CCccHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhC----CCCch---hHHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHD-----VMLARSILSTFMISLCRR-GHFLVATKLLRGLSSD----LGHSD---SHVILLKSL 583 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~---~~~~l~~~~ 583 (652)
+.+++++|...++..++.- +..-......+...|... .++++|+..++..-+- ..... .+.-.+..-
T Consensus 85 kk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~ya 164 (288)
T KOG1586|consen 85 KKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYA 164 (288)
T ss_pred hccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHH
Confidence 3445555555555443321 111122233455566554 6777888888776541 11111 222334444
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHH----HHHHHhhc--CCCCchHHHHHHHHHHc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISA----ELFASLSS--SSYPEPILLLLHALQEK 637 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~----~l~~~~~~--~g~~~~a~~~~~~~~~~ 637 (652)
...+++.+|+.+|+++.....+++..-|. .+-.++|. .++.-.+...+++..+.
T Consensus 165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 67889999999999988776655433332 12222333 34544555555555444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.13 E-value=2 Score=43.26 Aligned_cols=155 Identities=13% Similarity=0.101 Sum_probs=80.7
Q ss_pred HhcCChHHHHHHHHH--HHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhh
Q 006281 376 CKRNKSDELVEVYKV--LSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRP 453 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~--~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~ 453 (652)
.-.++++.+.++... +.. .+ +....+.++.-+.+.|..+.|+++-.+-.. -.....+.|+++.
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------rFeLAl~lg~L~~ 336 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPDH------------RFELALQLGNLDI 336 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HHH------------HHHHHHHCT-HHH
T ss_pred HHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChHH------------HhHHHHhcCCHHH
Confidence 345666665555431 111 11 233466677777777777777766544321 1234456677777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 454 AKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 454 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
|.++.+. .++...|..|.....++|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++.+.+..
T Consensus 337 A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~ 401 (443)
T PF04053_consen 337 ALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEE 401 (443)
T ss_dssp HHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHH
Confidence 7665443 23566777777777777777777777776542 34455556666776666666665554
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.+- ++....++.-.|+.++..+++.+.
T Consensus 402 ~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 402 RGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp TT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 442 233333444456666666655443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.09 E-value=3 Score=34.84 Aligned_cols=130 Identities=11% Similarity=0.117 Sum_probs=72.1
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-hHHHHH--HHHHcCCCH
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLK-TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT-TYTSLL--EGLCQETNL 521 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~--~~~~~~g~~ 521 (652)
.+.+..++|+.-|..+.+.|...-+. ..........+.|+...|+..|.+.-.....|-.. -...|= -.+...|-+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 44556666666666666554322111 11122234456677777777777766433333222 111111 124467777
Q ss_pred HHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh
Q 006281 522 QAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS 575 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 575 (652)
+......+-+-..+-......-..|.-+-.+.|++.+|.++|..+..+...|..
T Consensus 149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 777777765444443334455666777777888888888888887775444443
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.063 Score=31.28 Aligned_cols=24 Identities=13% Similarity=0.087 Sum_probs=11.8
Q ss_pred CCCCchhHHHHHHHHhccccHHHH
Q 006281 569 DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
+|.++.+|..++..|...|++++|
T Consensus 9 ~P~n~~a~~nla~~~~~~g~~~~A 32 (34)
T PF13431_consen 9 NPNNAEAYNNLANLYLNQGDYEEA 32 (34)
T ss_pred CCCCHHHHHHHHHHHHHCcCHHhh
Confidence 444444455555555555555444
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=93.64 E-value=1.1 Score=37.27 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=69.2
Q ss_pred cHHHHHHHHHH---HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH----
Q 006281 539 ARSILSTFMIS---LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI---- 610 (652)
Q Consensus 539 ~~~~~~~l~~~---~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---- 610 (652)
+..+...|+.. -.+.++.+++..++..+.- .|..+..-..-++.+...|++.+|+.+++.+.+..|..+..-
T Consensus 6 ~~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA 85 (160)
T PF09613_consen 6 SDEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLA 85 (160)
T ss_pred cHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34455555544 4578899999999999977 777888888889999999999999999999988887653211
Q ss_pred ----------HHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 611 ----------SAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 611 ----------~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|+.........|.-.++..+.+.+..+
T Consensus 86 ~CL~~~~D~~Wr~~A~evle~~~d~~a~~Lv~~Ll~~ 122 (160)
T PF09613_consen 86 LCLYALGDPSWRRYADEVLESGADPDARALVRALLAR 122 (160)
T ss_pred HHHHHcCChHHHHHHHHHHhcCCChHHHHHHHHHHHh
Confidence 122222222334455666666666655
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.8 Score=41.60 Aligned_cols=150 Identities=11% Similarity=0.086 Sum_probs=75.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCccCHH-hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITLDSS-VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASD 167 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 167 (652)
.++.-..+.+++..-.+.-.+..+.. |+-. .|..|. --......++.++|++..+.|-. . +.+.
T Consensus 173 ~IMq~AWRERnp~aRIkaA~eALei~--pdCAdAYILLA--EEeA~Ti~Eae~l~rqAvkAgE~----~-------lg~s 237 (539)
T PF04184_consen 173 EIMQKAWRERNPQARIKAAKEALEIN--PDCADAYILLA--EEEASTIVEAEELLRQAVKAGEA----S-------LGKS 237 (539)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhh--hhhhHHHhhcc--cccccCHHHHHHHHHHHHHHHHH----h-------hchh
Confidence 44455556666666666666655543 3221 222211 11234467777777776654311 0 0000
Q ss_pred CChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHH
Q 006281 168 GYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFK 247 (652)
Q Consensus 168 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 247 (652)
...+..-..++.+..++..|-..+-..+..++.+.|+.++|++.++++.+. ....+...+...|+.++...+.+.++..
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke-~p~~~~l~IrenLie~LLelq~Yad~q~ 316 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE-FPNLDNLNIRENLIEALLELQAYADVQA 316 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh-CCccchhhHHHHHHHHHHhcCCHHHHHH
Confidence 000010111122222222222222333444555668888888888888765 2122233455567888888888888888
Q ss_pred HHHHHhh
Q 006281 248 VLDELRI 254 (652)
Q Consensus 248 ~~~~m~~ 254 (652)
++.+-.+
T Consensus 317 lL~kYdD 323 (539)
T PF04184_consen 317 LLAKYDD 323 (539)
T ss_pred HHHHhcc
Confidence 8877644
|
The molecular function of this protein is uncertain. |
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.50 E-value=8.3 Score=37.89 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=57.6
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC---------
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG--------- 571 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--------- 571 (652)
..+|..++..+.+.|.++.|...+.++...+... .+.+....++.+-..|+..+|+..++.... ...
T Consensus 146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence 3455555566666666666666666554433111 233444445555555666666655554433 000
Q ss_pred ------------------C-------chhHHHHHHHHhcc------ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 572 ------------------H-------SDSHVILLKSLADA------REVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 572 ------------------~-------~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
. ...+..++.-+... +..+++...++++.+..|.... .+..++..+
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k-~~~~~a~~~ 302 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEK-AWHSWALFN 302 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHH-HHHHHHHHH
Confidence 0 01122233333333 6777888888888888776643 333344443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.12 E-value=1.3 Score=40.89 Aligned_cols=77 Identities=22% Similarity=0.345 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKR-----KGLDPDVSFYNSL 441 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~-----~~~~p~~~~~~~l 441 (652)
++..++..+...|+.+.+...++.+....+. +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 4445555666666666666666666665544 556666666666666666666666665543 3555555554444
Q ss_pred HHH
Q 006281 442 MEA 444 (652)
Q Consensus 442 l~~ 444 (652)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.10 E-value=2.6 Score=36.32 Aligned_cols=65 Identities=20% Similarity=0.165 Sum_probs=49.5
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPD--FIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
...+..+.+.|.+.|+.+.|.+.|.++.+....+. ...+-.+++...-.+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45666788889999999999999999887644443 335677888888888888888887776543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.10 E-value=3.6 Score=32.63 Aligned_cols=137 Identities=15% Similarity=0.178 Sum_probs=72.6
Q ss_pred HcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccH---HHHHHHHHhcCcHH
Q 006281 130 IQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGF---GVFIWKFCENAKLG 206 (652)
Q Consensus 130 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~g~~~ 206 (652)
.-.|.+++..++..+...+. +..-||-++--....-+-+-..++++.+-+ -.|.... -.++..++..|..
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~~- 85 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNKL- 85 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT---
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcch-
Confidence 34577777788877776642 555666666555544444444444444422 2222221 2233333333211
Q ss_pred HHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 207 QVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 207 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 286 (652)
.......++...+.|+-+.-.+++.++.+. -++++...-.+..+|.+.|+..++.+++.+
T Consensus 86 -------------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ 145 (161)
T PF09205_consen 86 -------------------SEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKE 145 (161)
T ss_dssp --------------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHH
Confidence 223344556677778888888888777642 345677777778888888888888888887
Q ss_pred HHhcCCC
Q 006281 287 KRKLGVA 293 (652)
Q Consensus 287 ~~~~~~~ 293 (652)
.-+.|++
T Consensus 146 ACekG~k 152 (161)
T PF09205_consen 146 ACEKGLK 152 (161)
T ss_dssp HHHTT-H
T ss_pred HHHhchH
Confidence 7777654
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.09 E-value=8.1 Score=36.58 Aligned_cols=132 Identities=11% Similarity=0.074 Sum_probs=62.9
Q ss_pred hhHHHHHHHHHhCCCccCcccHHHHHHHHHh--c----CcHHHHHHHHHHHHhccCCCC-CchhhHHHHHHHHHccCC--
Q 006281 171 DNALKMFDEMSHRGVEFSTIGFGVFIWKFCE--N----AKLGQVLSMLDEVRKRENSMI-NGSVIAVLIIHGFCKGKR-- 241 (652)
Q Consensus 171 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~-- 241 (652)
+....+++.|.+.|+.-+.++|.+..-.... . -...+|..+++.|++...... ++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445556666666665555555442222211 1 234456666666666522111 111222222221 2222
Q ss_pred --HHHHHHHHHHHhhCCCCcCH--HHHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCCCChhhHHHHHH
Q 006281 242 --VEEAFKVLDELRIRECKPDF--IAYRIVAEEFKLMGS--VFEREVVLKKKRKLGVAPRTNDYREFIL 304 (652)
Q Consensus 242 --~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~g~--~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 304 (652)
.+.++.+|+.+.+.|+..+- .....++..+..... ...+.++++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 34556666777666655432 222333332222222 3466777777888887777766655443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=93.03 E-value=11 Score=37.73 Aligned_cols=166 Identities=15% Similarity=0.125 Sum_probs=84.0
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
|.....+++..+...-...-...+..+|..-| .+...|..++++|... ..++-..+|+++.+..+. |.+.-..|..
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 44445556666666666666666666666543 4556666666666666 345566666666665443 3333334444
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc---hhHHHHHHHHhc
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS---DSHVILLKSLAD 585 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~l~~~~~~ 585 (652)
-|.+ ++.+.+..+|.+++..-++- -..+|..+.... ..+.+...++..++....+.. ..+.-+-.-|..
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~ 217 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE 217 (711)
T ss_pred HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence 4433 66666666666655433210 011232222211 234555555555554422111 112233344455
Q ss_pred cccHHHHHHHHHHHHhcCCCC
Q 006281 586 AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..++++|+++++.+++.+..+
T Consensus 218 ~eN~~eai~Ilk~il~~d~k~ 238 (711)
T COG1747 218 NENWTEAIRILKHILEHDEKD 238 (711)
T ss_pred ccCHHHHHHHHHHHhhhcchh
Confidence 666777777777666655443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.92 E-value=1.3 Score=38.10 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=49.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCCchhHH----
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHFLVATKLLRGLSSD---LGHSDSHV---- 577 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~---- 577 (652)
.+..+..-|++.|+.+.|.+.|.++......+. ...+-.+++...-.|++..+...+.++... +.+....+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 455556666666666666666666555443322 223455566666666666666666655441 11111111
Q ss_pred HHHHHHhccccHHHHHHHHHHHHh
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.-+-.+...|++.+|.+.+-+...
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 122233456677777666655543
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.89 E-value=1.3 Score=40.96 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhhHHHHH
Q 006281 438 YNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATTYTSLL 512 (652)
Q Consensus 438 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~~~~l~ 512 (652)
+..++..+...|+.+.+.+.++++.... +-+...|..++.+|.+.|+...|+..|+.+.+ .|+.|...+...+.
T Consensus 156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~ 234 (280)
T COG3629 156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE 234 (280)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence 3344444444555555555555555443 44444555555555555555555555554432 35555555444443
Q ss_pred HH
Q 006281 513 EG 514 (652)
Q Consensus 513 ~~ 514 (652)
..
T Consensus 235 ~~ 236 (280)
T COG3629 235 EI 236 (280)
T ss_pred HH
Confidence 33
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.17 Score=29.88 Aligned_cols=24 Identities=21% Similarity=0.020 Sum_probs=13.0
Q ss_pred HHHHHHHHhccccHHHHHHHHHHH
Q 006281 576 HVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+..|+.+|.+.|++++|+++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~a 25 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQA 25 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555556666666655553
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.80 E-value=0.23 Score=28.48 Aligned_cols=30 Identities=17% Similarity=0.168 Sum_probs=21.2
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+..++.++.+.|++++|++.++++.+..|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 445667777777777777777777777665
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.56 E-value=1 Score=38.44 Aligned_cols=92 Identities=17% Similarity=0.019 Sum_probs=72.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCch-----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSD-----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
=..-+.+.|++++|..-+..+.. .|..+. .|..-+.+..+.+.++.|++--.++.+.+|.....+.. -+.+|.
T Consensus 101 EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~R-RAeaye 179 (271)
T KOG4234|consen 101 EGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALER-RAEAYE 179 (271)
T ss_pred HHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHH-HHHHHH
Confidence 34457788999999999988877 333332 23345567788999999999999999999987655554 678899
Q ss_pred cCCCCchHHHHHHHHHHcc
Q 006281 620 SSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 620 ~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++|++=|+++.+..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 9999999999999888763
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=92.40 E-value=4.6 Score=32.07 Aligned_cols=63 Identities=6% Similarity=0.174 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
...-+..+..+|+-+.-.++++++.. .-++++.....+..+|.+.|+..++.+++.++-+.|.
T Consensus 89 vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 89 VDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 33444455555555555555555543 2234555555555555555655555555555555554
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.34 E-value=17 Score=38.42 Aligned_cols=104 Identities=11% Similarity=0.018 Sum_probs=59.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHhCCCcc---CHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 006281 89 SILKSLSLSRQINAIDSVLKQVKVNKITL---DSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLA 165 (652)
Q Consensus 89 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 165 (652)
--++.+.+.+.+++|+...+..... .+ ........|..+.-.|++++|-...-.|... +...|..-+..++
T Consensus 361 Dhi~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn----~~~eWe~~V~~f~ 434 (846)
T KOG2066|consen 361 DHIDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN----NAAEWELWVFKFA 434 (846)
T ss_pred hhHHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc----hHHHHHHHHHHhc
Confidence 3456667778888888777654332 33 3456777888888888888887777766533 4445555555555
Q ss_pred hcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHh
Q 006281 166 SDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCE 201 (652)
Q Consensus 166 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 201 (652)
..++... ++.-++......+...|..++..+..
T Consensus 435 e~~~l~~---Ia~~lPt~~~rL~p~vYemvLve~L~ 467 (846)
T KOG2066|consen 435 ELDQLTD---IAPYLPTGPPRLKPLVYEMVLVEFLA 467 (846)
T ss_pred cccccch---hhccCCCCCcccCchHHHHHHHHHHH
Confidence 4444332 22223322223345556555555444
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=14 Score=37.00 Aligned_cols=163 Identities=12% Similarity=0.052 Sum_probs=121.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
..|....-+++..+...-.+.-...+..+|...| -+...|..++++|... ..+.-..+|+++++..+. |...-..|
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReL 138 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGREL 138 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHH
Confidence 5566778888999999888899999999999865 3677899999999888 557789999999998886 66667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhCCC----Cc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHh
Q 006281 547 MISLCRRGHFLVATKLLRGLSSDLG----HS---DSHVILLKSLADAREVEMAIEHIKWIQESSPT-MLQEISAELFASL 618 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~~~----~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~ 618 (652)
+..|.+ ++...+..+|.++..... ++ +.|.-+... -..+.+....+..++.+.... .-.+.+..+..-|
T Consensus 139 a~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 139 ADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 777777 889999999988765211 11 123222221 145678888888888776443 3456667677888
Q ss_pred hcCCCCchHHHHHHHHHH
Q 006281 619 SSSSYPEPILLLLHALQE 636 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~ 636 (652)
....+|.+|+.+++...+
T Consensus 216 s~~eN~~eai~Ilk~il~ 233 (711)
T COG1747 216 SENENWTEAIRILKHILE 233 (711)
T ss_pred ccccCHHHHHHHHHHHhh
Confidence 999999999999884433
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.19 E-value=11 Score=35.78 Aligned_cols=132 Identities=11% Similarity=0.183 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHhCCCCCChhhHHHHHHHHHh--cC----ChhhHHHHHHHHHhCCC---ccCcccHHHHHHHHHhcCc-
Q 006281 135 TQKAFSVFNEVKFNCEDIGPEICNSLLAVLAS--DG----YIDNALKMFDEMSHRGV---EFSTIGFGVFIWKFCENAK- 204 (652)
Q Consensus 135 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~g~- 204 (652)
+++.+.+++.+.+.|...+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 44556677777777777666555443332222 11 25678888888887653 3455666666533 2222
Q ss_pred ---HHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC-C--HHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006281 205 ---LGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK-R--VEEAFKVLDELRIRECKPDFIAYRIVAE 269 (652)
Q Consensus 205 ---~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~--~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 269 (652)
.+.+..+++.+... |....+..-+.+-+-++.... . +.++.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~-~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADA-GFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHh-CCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 35566777777775 666655544433333333222 1 4578889999999999988877765543
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.26 Score=28.53 Aligned_cols=30 Identities=23% Similarity=0.122 Sum_probs=22.4
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.|..++..+...|++++|.+.++++.+.+|
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 566777777777788888877777777665
|
... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.76 Score=42.64 Aligned_cols=53 Identities=11% Similarity=0.170 Sum_probs=29.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
-|.++|.+++|+.+|.+.+.. .| |.+++..-..+|.+...+..|..-...++.
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA 159 (536)
T ss_pred hhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 466666666666666655532 33 555555555566666666555555444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=91.85 E-value=25 Score=39.26 Aligned_cols=103 Identities=17% Similarity=0.063 Sum_probs=60.3
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCch-hHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSD-SHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 593 (652)
+...+.+++|.-.|+..-+ ...-+.+|..+|++.+|..+..++........ .-..|+.-+...+++-+|.
T Consensus 949 L~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa 1019 (1265)
T KOG1920|consen 949 LREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAA 1019 (1265)
T ss_pred HHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHH
Confidence 3445566666666653211 22345567777777777777776655211111 1136677777788888888
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
+++++..+.- ...+..|++.-.|++|..+....
T Consensus 1020 ~il~e~~sd~--------~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1020 KILLEYLSDP--------EEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred HHHHHHhcCH--------HHHHHHHhhHhHHHHHHHHHHhc
Confidence 7776665532 11344566777788887665543
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=91.79 E-value=21 Score=38.26 Aligned_cols=189 Identities=12% Similarity=-0.011 Sum_probs=93.5
Q ss_pred hcCChhhHHHHHHHHHHcCC-CC-----CHHHHHHHHHH--HHhcCCHHHHHHHHH--------HHHHCCCCCCHhhHHH
Q 006281 447 REDLLRPAKKLWDQMFASGC-SG-----NLKTYNILISK--FSEVGEIEGALRLFH--------NMLEKGVAPDATTYTS 510 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~-~~-----~~~~~~~l~~~--~~~~g~~~~A~~~~~--------~m~~~~~~p~~~~~~~ 510 (652)
-.+++..|...++.+.+..- .| ....+..++.+ +-..|+.+.|+..|. .....+...+...+..
T Consensus 373 ~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~El~ila~ 452 (608)
T PF10345_consen 373 IRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRELYILAA 452 (608)
T ss_pred HCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchHHHHHHH
Confidence 46789899999998886411 11 12233333333 345799999999998 4444444433333332
Q ss_pred --HHHHHHc--CCCHHH--HHHHHHHhhhC---CCCccHHHHHHH-HHHHHhcCC--HHHHHHHHHHhhhC----CCCc-
Q 006281 511 --LLEGLCQ--ETNLQA--AFEVFNKSVNH---DVMLARSILSTF-MISLCRRGH--FLVATKLLRGLSSD----LGHS- 573 (652)
Q Consensus 511 --l~~~~~~--~g~~~~--a~~~~~~~~~~---~~~~~~~~~~~l-~~~~~~~g~--~~~A~~~~~~~~~~----~~~~- 573 (652)
++-.+.. ....++ ..++++.+... .+..+..++..+ +.++..... ..++...+.+..+. ..+.
T Consensus 453 LNl~~I~~~~~~~~~~~~~~~~l~~~i~p~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ne~k~~l~~~L~~~~~~~~n~~ 532 (608)
T PF10345_consen 453 LNLAIILQYESSRDDSESELNELLEQIEPLCSNSPNSYNRTAYCLVLATYNTFEPFSSNEAKRHLQEALKMANNKLGNSQ 532 (608)
T ss_pred HHHHHHhHhhcccchhhhHHHHHHHhcCccccCCccHHHHHHHHHHHHHHhhCCccccHHHHHHHHHHHHHHHHhhccch
Confidence 1111222 222333 66677654321 122223333333 333332221 23554444432221 1111
Q ss_pred --h-hHHHHHHHHhccccHHHHHHHHHHHHh---cCCCCcHHHHH-----HHHHHhhcCCCCchHHHHHHHHHH
Q 006281 574 --D-SHVILLKSLADAREVEMAIEHIKWIQE---SSPTMLQEISA-----ELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 574 --~-~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
. ..+.+...+. .|+..+..+....... +.|+....+|. .+...+...|+.++|.+..++...
T Consensus 533 l~~~~L~lm~~~lf-~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~~ 605 (608)
T PF10345_consen 533 LLAILLNLMGHRLF-EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLDR 605 (608)
T ss_pred HHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 1 2223444444 6777666555554433 22333444442 344457789999999988876653
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.71 E-value=20 Score=37.81 Aligned_cols=246 Identities=14% Similarity=0.088 Sum_probs=141.6
Q ss_pred ChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006281 345 DPRSAIVFFNFMIE-------KGRVPTLSTLSNLSKNLCKRN-----KSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (652)
Q Consensus 345 ~~~~a~~~~~~m~~-------~~~~~~~~~~~~l~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (652)
|.+.|+.+|....+ .+ +......+..+|.+.. +.+.|..++....+.|.+ +.... +..++..
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~ 337 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYET 337 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHc
Confidence 55555555555544 44 2223344444555432 567788888888887653 43333 3333333
Q ss_pred c---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006281 413 S---GRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC--REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE 487 (652)
Q Consensus 413 ~---g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 487 (652)
. .+...|.++|...-+.|.. ...-+..++.... -..+...|..++.+..+.| .|...--...+..+.. ++++
T Consensus 338 g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~ 414 (552)
T KOG1550|consen 338 GTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYD 414 (552)
T ss_pred CCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-cccc
Confidence 2 3578999999998888753 2222222211111 2346788899999888887 4443333333444444 7788
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHH-HHH---Hc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc----CC
Q 006281 488 GALRLFHNMLEKGVAPDATTYTSLL-EGL---CQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR----GH 555 (652)
Q Consensus 488 ~A~~~~~~m~~~~~~p~~~~~~~l~-~~~---~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~ 555 (652)
.+.-.+..+.+.|.. ...+-...+ ... .. ..+.+.+..++.+....| +......+.+.|..- .+
T Consensus 415 ~~~~~~~~~a~~g~~-~~q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d 490 (552)
T KOG1550|consen 415 TALALYLYLAELGYE-VAQSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRD 490 (552)
T ss_pred HHHHHHHHHHHhhhh-HHhhHHHHHHHhccccccccccccchhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCC
Confidence 888777777776654 222222221 111 11 225666777777665555 334455555555443 34
Q ss_pred HHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCC
Q 006281 556 FLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 556 ~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++.|...+....... ......++..+.. .. ...|.++++++.+.+...
T Consensus 491 ~~~a~~~y~~a~~~~--~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~~~~~~~~~ 542 (552)
T KOG1550|consen 491 PEKAAAQYARASEQG--AQALFNLGYMHEHGEGIKV-LHLAKRYYDQASEEDSRA 542 (552)
T ss_pred hHHHHHHHHHHHHhh--hHHHhhhhhHHhcCcCcch-hHHHHHHHHHHHhcCchh
Confidence 888888888887765 5555566665532 33 788999998888876654
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=91.42 E-value=23 Score=37.97 Aligned_cols=247 Identities=9% Similarity=0.003 Sum_probs=118.9
Q ss_pred cCChHHHHHHHHHHHhCC-CCcCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 378 RNKSDELVEVYKVLSAND-YFTDM--ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~-~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
..+.+.|...+....... ..+.. .++..+....+..+...++...++...... .+......-+....+.++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence 345566777776654332 21111 123333333333322445555555543322 1333334444444567777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHH-hhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNK-SVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~ 533 (652)
...+..|.... .-...-.--+..++...|+.++|...|+.+... .+|-.++.+ .+.|..-. ...-.. ...
T Consensus 332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa-~~Lg~~~~-~~~~~~~~~~ 402 (644)
T PRK11619 332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAA-QRLGEEYP-LKIDKAPKPD 402 (644)
T ss_pred HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHH-HHcCCCCC-CCCCCCCchh
Confidence 77777764432 223344445566666677777777777776421 122222211 11221100 000000 000
Q ss_pred CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh------cCCCCc
Q 006281 534 HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE------SSPTML 607 (652)
Q Consensus 534 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~ 607 (652)
..+.-.+ -..-+..+...|...+|...+..+... .++.....++....+.|.++.++........ ..|.
T Consensus 403 ~~~~~~~--~~~ra~~L~~~g~~~~a~~ew~~~~~~-~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~-- 477 (644)
T PRK11619 403 SALTQGP--EMARVRELMYWNMDNTARSEWANLVAS-RSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPL-- 477 (644)
T ss_pred hhhccCh--HHHHHHHHHHCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCc--
Confidence 0000000 112344566778999998888877765 3455666777777788888888776654332 1222
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHcccccC
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEKCLDSE 642 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~ 642 (652)
.|...+..+...-.++.++-+----.|.++.+.
T Consensus 478 --~~~~~~~~~a~~~~v~~~lv~ai~rqES~f~p~ 510 (644)
T PRK11619 478 --AWNDEFRRYTSGKGIPQSYAMAIARQESAWNPK 510 (644)
T ss_pred --chHHHHHHHHHHcCCCHHHHHHHHHHhcCCCCC
Confidence 233344444454456665533333334455443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.14 E-value=16 Score=35.81 Aligned_cols=65 Identities=12% Similarity=0.125 Sum_probs=46.6
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSG---NLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
...+|..+...+.+.|.++.|...+..+...+... .+...-.-+...-..|+..+|+..++....
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44577888888888899998888888887643111 334444455666677888888888888776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.11 E-value=2.9 Score=38.63 Aligned_cols=48 Identities=13% Similarity=0.087 Sum_probs=23.7
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 450 LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
++++++.++..=+.-|+-||..+++.+|+.+.+.+++.+|.++.-.|.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~ 162 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM 162 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 344444444444444555555555555555555555555554444443
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=91.00 E-value=7.9 Score=35.74 Aligned_cols=146 Identities=12% Similarity=0.175 Sum_probs=92.4
Q ss_pred hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh-CCCccCHHhHHHHHHHHHcCC--ChhHHHHH
Q 006281 65 SLALGFFNWASQQPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV-NKITLDSSVYRFIIPSLIQGK--NTQKAFSV 141 (652)
Q Consensus 65 ~~a~~~f~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~~~~g--~~~~a~~~ 141 (652)
+.-..|++-...+........ |..++. +.....+|..+|+..-. ..+-.|..+...+++...... ....-.++
T Consensus 113 ~Dli~FL~~~i~~~~~~k~~~-Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEv 188 (292)
T PF13929_consen 113 EDLISFLKLVIINLSSNKSFN-YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEV 188 (292)
T ss_pred HHHHHHHHHHHhccccccchH-HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHH
Confidence 345666666544444333333 544442 33456677777774322 235567777777777776522 23333444
Q ss_pred HHHHHh-CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccCcccHHHHHHHHHhcCcHHHHHHHHHH
Q 006281 142 FNEVKF-NCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQVLSMLDE 214 (652)
Q Consensus 142 ~~~~~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 214 (652)
.+.+.. .+..++..+--.++..++..+++..-.++++..... +..-|...|..+|+.....|+..-...+.++
T Consensus 189 V~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 189 VDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 444443 245667777888888888888888888888876655 5666788888888888888888777777664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.98 E-value=8.8 Score=32.44 Aligned_cols=31 Identities=13% Similarity=0.209 Sum_probs=16.2
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
+.+..+.+.+++|+...+..+++.+.+.|++
T Consensus 15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~ 45 (167)
T PF07035_consen 15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQF 45 (167)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Confidence 3334444445555555555555555555554
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.87 E-value=0.51 Score=27.85 Aligned_cols=22 Identities=18% Similarity=0.227 Sum_probs=9.4
Q ss_pred HHHHHHHHcCCCHHHHHHHHHH
Q 006281 509 TSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
..|...|.+.|++++|+++|++
T Consensus 3 ~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 3 NNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3344444444444444444444
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.48 E-value=9.4 Score=33.46 Aligned_cols=76 Identities=16% Similarity=0.210 Sum_probs=39.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV--MLARSILSTFMIS 549 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~ 549 (652)
.+..++.+.+.+...+|+...+.-++.... |..+-..+++.+|-.|++++|..-++-+-...+ .+-..+|..++.+
T Consensus 4 l~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 4 LRDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred hHHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 344455555666666666666655554222 444455566666666666666665554433322 2233445544443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=90.16 E-value=18 Score=35.00 Aligned_cols=164 Identities=11% Similarity=-0.001 Sum_probs=109.4
Q ss_pred CCCHHHHHHHHHHHHhcC---C---------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 467 SGNLKTYNILISKFSEVG---E---------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g---~---------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
+-|+.+|-.++..--..- . .+.-+.+++++++.+. -+...+..++..+.+..+.++..+.+++++..
T Consensus 16 P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~ 94 (321)
T PF08424_consen 16 PHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFK 94 (321)
T ss_pred cccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 678899988887543321 1 3456678888887743 36677788888888888999999999999988
Q ss_pred CCCccHHHHHHHHHHHHh---cCCHHHHHHHHHHhhh-------CC-----CCchh-------HHHHHHHHhccccHHHH
Q 006281 535 DVMLARSILSTFMISLCR---RGHFLVATKLLRGLSS-------DL-----GHSDS-------HVILLKSLADAREVEMA 592 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~-------~~-----~~~~~-------~~~l~~~~~~~g~~~~A 592 (652)
.+. +..+|..++..... .-.+++...+|.+... .. ..+.. +..+...+.+.|..+.|
T Consensus 95 ~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~A 173 (321)
T PF08424_consen 95 NPG-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERA 173 (321)
T ss_pred CCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHH
Confidence 776 78888888877654 2245666666554422 11 01111 11233344678999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccccc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCLDS 641 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~ 641 (652)
+.+++.+.+.+.-.+..... ....+.++.|+.+.+.+++.
T Consensus 174 va~~Qa~lE~n~~~P~~~~~---------~~~~~~~~~fe~FWeS~vpR 213 (321)
T PF08424_consen 174 VALWQALLEFNFFRPESLSS---------SSFSERLESFEEFWESEVPR 213 (321)
T ss_pred HHHHHHHHHHHcCCcccccc---------ccHHHHHHHHHHHhCcCCCC
Confidence 99999999987644433332 11127778888888887654
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.13 E-value=9.3 Score=31.31 Aligned_cols=51 Identities=10% Similarity=0.117 Sum_probs=30.3
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCH---hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDA---TTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
..++++++..+++.|.-. .|+. .++... .+...|++.+|.++|++..+...
T Consensus 22 ~~~d~~D~e~lLdALrvL--rP~~~e~d~~dg~--l~i~rg~w~eA~rvlr~l~~~~~ 75 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVL--RPNLKELDMFDGW--LLIARGNYDEAARILRELLSSAG 75 (153)
T ss_pred hcCCHHHHHHHHHHHHHh--CCCccccchhHHH--HHHHcCCHHHHHHHHHhhhccCC
Confidence 467777777777777643 3332 233322 24566777777777777655543
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=90.06 E-value=20 Score=35.13 Aligned_cols=94 Identities=11% Similarity=-0.019 Sum_probs=61.5
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHH-hcCCHHHHHHHHHHhhh--CCC----CchhHHHHHHHH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLC-RRGHFLVATKLLRGLSS--DLG----HSDSHVILLKSL 583 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~--~~~----~~~~~~~l~~~~ 583 (652)
.+..+.+.|-+..|.++.+-+...++.-|+.....+|+.|+ +.++++--+++.+.... ... .|....+.+-++
T Consensus 109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~aLA~ 188 (360)
T PF04910_consen 109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSIALAY 188 (360)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHHHHHH
Confidence 34567788888889998888888887767777777777765 66777777777776543 111 223333555555
Q ss_pred hccccH---------------HHHHHHHHHHHhcCC
Q 006281 584 ADAREV---------------EMAIEHIKWIQESSP 604 (652)
Q Consensus 584 ~~~g~~---------------~~A~~~~~~~~~~~~ 604 (652)
...++. ++|.+.+.++...-|
T Consensus 189 ~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP 224 (360)
T PF04910_consen 189 FRLEKEESSQSSAQSGRSENSESADEALQKAILRFP 224 (360)
T ss_pred HHhcCccccccccccccccchhHHHHHHHHHHHHhH
Confidence 555555 777777776554443
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.03 E-value=30 Score=37.05 Aligned_cols=212 Identities=17% Similarity=0.095 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HhCC------------CccCHHhHHHHHHHHHcCCChhHHHHHHHHHHh
Q 006281 84 PLSYHSILKSLSLSRQINAIDSVLKQV----KVNK------------ITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKF 147 (652)
Q Consensus 84 ~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~------------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~ 147 (652)
..+.+.++.++...+.+-.-.-+++.. ...+ ....+.....-+..+.+...++.|+.+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 345677777777777665444443333 2322 1223334556667777777777777775543
Q ss_pred CCCCCChhhHHHHHH----HHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCC
Q 006281 148 NCEDIGPEICNSLLA----VLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMI 223 (652)
Q Consensus 148 ~~~~~~~~~~~~ll~----~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 223 (652)
..+......++. .+.+.|++++|...|-+-... +.| ..++.-|....+..+-..+++.+.+. |...
T Consensus 361 ---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~IknLt~YLe~L~~~-gla~ 430 (933)
T KOG2114|consen 361 ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQRIKNLTSYLEALHKK-GLAN 430 (933)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHHHHHHHHHHHHHHHc-cccc
Confidence 223444444443 345678888888777654432 122 23555666667777777777777777 4433
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECK-PDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREF 302 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 302 (652)
....+.|+.+|.+.++.++-.++.+... .|.. -| ....+..+.+.+-.++|..+-.....+ ......
T Consensus 431 --~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~h-----e~vl~i- 498 (933)
T KOG2114|consen 431 --SDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKKH-----EWVLDI- 498 (933)
T ss_pred --chhHHHHHHHHHHhcchHHHHHHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhccC-----HHHHHH-
Confidence 3344568888888888887777766554 2211 12 234556666666666665554333221 111111
Q ss_pred HHHHHccCCHHHHHHHHHH
Q 006281 303 ILGLIVERRICEAKELGEV 321 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~ 321 (652)
.+-..+++++|.+.+..
T Consensus 499 --lle~~~ny~eAl~yi~s 515 (933)
T KOG2114|consen 499 --LLEDLHNYEEALRYISS 515 (933)
T ss_pred --HHHHhcCHHHHHHHHhc
Confidence 22334667777766544
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.66 E-value=20 Score=34.57 Aligned_cols=133 Identities=11% Similarity=0.043 Sum_probs=93.6
Q ss_pred CHHHHHHHHHHHHhcCC------------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006281 434 DVSFYNSLMEACCREDL------------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV 501 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~------------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~ 501 (652)
|+.+|-.++..--..-. .+.-+.++++.++.+ +.+...+-.++..+.+..+.++..+-|+++.....
T Consensus 18 di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 18 DIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNP 96 (321)
T ss_pred cHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCC
Confidence 78888888865433221 355677888888885 57778888889999999999999999999998643
Q ss_pred CCCHhhHHHHHHHHHc---CCCHHHHHHHHHHhhhC------CC----Ccc-------HHHHHHHHHHHHhcCCHHHHHH
Q 006281 502 APDATTYTSLLEGLCQ---ETNLQAAFEVFNKSVNH------DV----MLA-------RSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~------~~----~~~-------~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
. +...|...++.... .-.++....+|.+++.. +. .+. ..++..+...+..+|..+.|..
T Consensus 97 ~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava 175 (321)
T PF08424_consen 97 G-SPELWREYLDFRQSNFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVA 175 (321)
T ss_pred C-ChHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHH
Confidence 3 67788888876544 33577788877776541 11 001 1224444555668999999999
Q ss_pred HHHHhhh
Q 006281 562 LLRGLSS 568 (652)
Q Consensus 562 ~~~~~~~ 568 (652)
+++.+.+
T Consensus 176 ~~Qa~lE 182 (321)
T PF08424_consen 176 LWQALLE 182 (321)
T ss_pred HHHHHHH
Confidence 9998877
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=89.55 E-value=0.048 Score=45.39 Aligned_cols=54 Identities=7% Similarity=0.132 Sum_probs=24.6
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHH
Q 006281 90 ILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFN 143 (652)
Q Consensus 90 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 143 (652)
+++.+.+.+.+..+..+++.+...+...+....+.++..|++.+..++..++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~ 66 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK 66 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence 344444445555555555555544433444445555555555544444444433
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=89.51 E-value=3.3 Score=30.85 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=45.6
Q ss_pred HHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHHHHHHHhhcCCCCc-hHHHHHHHH
Q 006281 561 KLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISAELFASLSSSSYPE-PILLLLHAL 634 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~-~a~~~~~~~ 634 (652)
.+-..+..+|.+......++..+...|++++|++.+-.+...++.. ....-..++.++...|.-+ .+.++-++|
T Consensus 10 al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~RRkL 85 (90)
T PF14561_consen 10 ALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYRRKL 85 (90)
T ss_dssp HHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 3444455577778888888888888888888888888888877655 2233344667776666644 344443333
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.25 E-value=15 Score=32.31 Aligned_cols=85 Identities=12% Similarity=0.010 Sum_probs=41.8
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
.|-++.|..=|.+.....+. -+.+||.+.--+...|+++.|.+.|+...+....-+-...|.- -++.-.|++.-|.+=
T Consensus 78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRg-i~~YY~gR~~LAq~d 155 (297)
T COG4785 78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG-IALYYGGRYKLAQDD 155 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccc-eeeeecCchHhhHHH
Confidence 34444444444443333222 3346666666667777777777777776665322111111111 122344666666655
Q ss_pred HHHHHHc
Q 006281 458 WDQMFAS 464 (652)
Q Consensus 458 ~~~~~~~ 464 (652)
+...-..
T Consensus 156 ~~~fYQ~ 162 (297)
T COG4785 156 LLAFYQD 162 (297)
T ss_pred HHHHHhc
Confidence 5554443
|
|
| >KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.23 E-value=39 Score=37.17 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=27.4
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh
Q 006281 374 NLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT 412 (652)
Q Consensus 374 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~ 412 (652)
.|.+....+.++.+++.+....-.++....+.++..|+.
T Consensus 600 ~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 600 NYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred HHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 356667777888888887766555566677777777664
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=89.02 E-value=1.7 Score=43.57 Aligned_cols=100 Identities=17% Similarity=0.096 Sum_probs=75.6
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
-.|+...|...+..+....+.-.......|...+.+.|...+|..++.+... ....+-.+..+++++....++++|++.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~ 698 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA 698 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence 4689999999988776655433333456688888888988899998887766 444555777999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHH
Q 006281 596 IKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
++++.++.|+++ ++-+.|..+
T Consensus 699 ~~~a~~~~~~~~-~~~~~l~~i 719 (886)
T KOG4507|consen 699 FRQALKLTTKCP-ECENSLKLI 719 (886)
T ss_pred HHHHHhcCCCCh-hhHHHHHHH
Confidence 999999998874 333334433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.01 E-value=1.6 Score=36.85 Aligned_cols=80 Identities=15% Similarity=0.054 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh-hhCCCCchhHHHHHHHHhcc----------ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC--
Q 006281 556 FLVATKLLRGL-SSDLGHSDSHVILLKSLADA----------REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS-- 622 (652)
Q Consensus 556 ~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-- 622 (652)
++.|.+..+.. ..+|.+++.++..+.++... .-+++|+.-+++++..+|+....+|+ ++.+|...+
T Consensus 7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~-lGnA~ts~A~l 85 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWC-LGNAYTSLAFL 85 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHH-HHHHHHHHHhh
Confidence 45666666663 44788888777666665332 34678888888999999999777777 888876533
Q ss_pred --CCchHHHHHHHHHH
Q 006281 623 --YPEPILLLLHALQE 636 (652)
Q Consensus 623 --~~~~a~~~~~~~~~ 636 (652)
+..+|.++|++..+
T Consensus 86 ~~d~~~A~~~F~kA~~ 101 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATE 101 (186)
T ss_dssp ---HHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHH
Confidence 44455555554443
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=88.71 E-value=20 Score=33.23 Aligned_cols=136 Identities=8% Similarity=0.127 Sum_probs=84.5
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhc--CChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006281 415 RLREAYGVIQEMKR-KGLDPDVSFYNSLMEACCRE--DLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 415 ~~~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 490 (652)
.+.+|+.+|+.... ..+--|..+...+++..... .....-.++.+.+... |-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 35667777763222 12333666666666665541 1233344444555433 34677778888888888888888888
Q ss_pred HHHHHHHHC-CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh-----hhCCCCccHHHHHHHHHHH
Q 006281 491 RLFHNMLEK-GVAPDATTYTSLLEGLCQETNLQAAFEVFNKS-----VNHDVMLARSILSTFMISL 550 (652)
Q Consensus 491 ~~~~~m~~~-~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~-----~~~~~~~~~~~~~~l~~~~ 550 (652)
++++..... +..-|...|..+|+.....|+..-...+.++- .+.++..++..-..+-..+
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF 288 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELF 288 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHH
Confidence 888877654 55557778888888888888877776666542 2344555555544444433
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=88.57 E-value=3.6 Score=41.66 Aligned_cols=130 Identities=15% Similarity=0.021 Sum_probs=74.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHH
Q 006281 156 ICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHG 235 (652)
Q Consensus 156 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 235 (652)
..+.+...+.+.|..++|+++- +|...- .....+.|+++.|.++..+.. +..-|..|.++
T Consensus 616 ~rt~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~--------s~~Kw~~Lg~~ 675 (794)
T KOG0276|consen 616 IRTKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN--------SEVKWRQLGDA 675 (794)
T ss_pred hhhhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc--------chHHHHHHHHH
Confidence 4556666666666666665542 222111 123345677777777665443 24566777777
Q ss_pred HHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHH
Q 006281 236 FCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA 315 (652)
Q Consensus 236 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a 315 (652)
..+.|++..|.+.|..... |..|+-.+...|+.+....+-....+.|. .|...-++...|+++++
T Consensus 676 al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C 740 (794)
T KOG0276|consen 676 ALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEEC 740 (794)
T ss_pred HhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHH
Confidence 7788888888877766543 34455556666666554444444444442 23334455566666666
Q ss_pred HHHHH
Q 006281 316 KELGE 320 (652)
Q Consensus 316 ~~~~~ 320 (652)
.+++.
T Consensus 741 ~~lLi 745 (794)
T KOG0276|consen 741 LELLI 745 (794)
T ss_pred HHHHH
Confidence 66543
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.27 E-value=1.6 Score=25.01 Aligned_cols=27 Identities=7% Similarity=0.010 Sum_probs=14.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+..+..++...|++++|++.+++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555555566666666666655544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=88.14 E-value=21 Score=32.89 Aligned_cols=42 Identities=17% Similarity=0.015 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 459 (652)
..+|+++|.-+....-+ .++-..++..+-...+...|...+.
T Consensus 149 s~KA~ELFayLv~hkgk--~v~~~~~ie~lwpe~D~kka~s~lh 190 (361)
T COG3947 149 SRKALELFAYLVEHKGK--EVTSWEAIEALWPEKDEKKASSLLH 190 (361)
T ss_pred hhHHHHHHHHHHHhcCC--cccHhHHHHHHccccchhhHHHHHH
Confidence 35677777777665322 2334445555555555555555443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=87.88 E-value=44 Score=36.21 Aligned_cols=224 Identities=14% Similarity=0.007 Sum_probs=118.2
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHH-HHHhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVS-------FYNSLME-ACCREDLLRPAKKLWDQMFAS----GCSGNLKTYNILI 477 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~-------~~~~ll~-~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~ 477 (652)
.....++++|..+..++...-..|+.. .++.+-. .....|+++.|.++.+..... -..+....+..+.
T Consensus 425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~ 504 (894)
T COG2909 425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG 504 (894)
T ss_pred HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence 345678888888888776543222221 2333322 223568888888888777654 2334566777778
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHh---hHHHHHH--HHHcCCC--HHHHHHHHHHhhhCC----C--CccHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDAT---TYTSLLE--GLCQETN--LQAAFEVFNKSVNHD----V--MLARSILS 544 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~---~~~~l~~--~~~~~g~--~~~a~~~~~~~~~~~----~--~~~~~~~~ 544 (652)
.+..-.|++++|..+.+...+..-.-+.. .|..+.. .+...|. .++....|....... + .+-..+..
T Consensus 505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~ 584 (894)
T COG2909 505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA 584 (894)
T ss_pred HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence 88888899999988877765432121222 2333322 3455662 233333333222111 1 11223444
Q ss_pred HHHHHHHh-cCCHHHHHHHHHHhhhCCCCc-hh---HHHHHHHHhccccHHHHHHHHHHHHhcCCCC-cHHHHH---HHH
Q 006281 545 TFMISLCR-RGHFLVATKLLRGLSSDLGHS-DS---HVILLKSLADAREVEMAIEHIKWIQESSPTM-LQEISA---ELF 615 (652)
Q Consensus 545 ~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~-~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~---~l~ 615 (652)
.+..++.+ .+...++..-++--....+.+ .. +..++......|+.++|...+.++....... +.+.|. ..+
T Consensus 585 ~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v 664 (894)
T COG2909 585 QLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKV 664 (894)
T ss_pred HHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHh
Confidence 45555444 222333333333322221111 11 2267788888999999999888877642222 122221 122
Q ss_pred HH--hhcCCCCchHHHHHHH
Q 006281 616 AS--LSSSSYPEPILLLLHA 633 (652)
Q Consensus 616 ~~--~~~~g~~~~a~~~~~~ 633 (652)
.. -...|+.+.+...+.+
T Consensus 665 ~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 665 KLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hHHHhcccCCHHHHHHHHHh
Confidence 22 2367888888776664
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.34 E-value=22 Score=32.23 Aligned_cols=49 Identities=10% Similarity=0.112 Sum_probs=26.6
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhhHHHHHHHHH
Q 006281 414 GRLREAYGVIQEMKRKGLDPDV---SFYNSLMEACCREDLLRPAKKLWDQMF 462 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~ 462 (652)
..+++|+.-|++..+....-.. .....++....+.+++++..+.+.++.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 4567777777766654222122 223444555566666666666666554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.21 E-value=3.2 Score=30.83 Aligned_cols=29 Identities=10% Similarity=0.285 Sum_probs=11.0
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+.|++....+.+++|-+.+|+..|+++|+
T Consensus 38 lVP~P~ii~aaLrAcRRvND~alAVR~lE 66 (103)
T cd00923 38 LVPEPKVIEAALRACRRVNDFALAVRILE 66 (103)
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.4 Score=25.38 Aligned_cols=19 Identities=21% Similarity=0.468 Sum_probs=6.6
Q ss_pred HHHHHhcCCHHHHHHHHHH
Q 006281 477 ISKFSEVGEIEGALRLFHN 495 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~ 495 (652)
..+|...|++++|+..|++
T Consensus 8 g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 8 GNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHhCCchHHHHHHHH
Confidence 3333333333333333333
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=87.04 E-value=83 Score=38.47 Aligned_cols=63 Identities=13% Similarity=-0.040 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
..+|-..++.....|+++.|...+-++.+.. .+..+...+..+.+.|+...|+..+++..+++
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r-~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR-LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc-cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 4567778888888888888888777666532 56677778888888888888988888887553
|
|
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.74 E-value=9.4 Score=34.00 Aligned_cols=84 Identities=12% Similarity=0.042 Sum_probs=40.4
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHhh-HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAPDATT-YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
|....+++.|+..|.+.+. +.|+..+ |..-+.++.+..+++.+.+--.++++..+. .......+..++.....+++
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N-~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN-LVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH-HHHHHHHHHHHHHhhccccH
Confidence 3344455566665555553 3444433 233344445555555555555544443332 12223334445555555666
Q ss_pred HHHHHHHh
Q 006281 559 ATKLLRGL 566 (652)
Q Consensus 559 A~~~~~~~ 566 (652)
|+..+.+.
T Consensus 97 aI~~Lqra 104 (284)
T KOG4642|consen 97 AIKVLQRA 104 (284)
T ss_pred HHHHHHHH
Confidence 66655554
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.72 E-value=5.9 Score=29.49 Aligned_cols=62 Identities=13% Similarity=0.057 Sum_probs=42.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMV 407 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li 407 (652)
|.-++.+-++.+...+..|++....+.+++|.+.+++..|+++|+.+..+.-. +...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~-~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA-HKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC-chhhHHHHH
Confidence 34455666677777778888888888888888888888888888877643211 233454444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=86.51 E-value=25 Score=31.94 Aligned_cols=26 Identities=19% Similarity=0.323 Sum_probs=11.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.|..=|+.|..+++-.+-..+|+..+
T Consensus 193 iYAlEIQmYT~qKnNKkLK~lYeqal 218 (440)
T KOG1464|consen 193 IYALEIQMYTEQKNNKKLKALYEQAL 218 (440)
T ss_pred hHhhHhhhhhhhcccHHHHHHHHHHH
Confidence 34444444444444444444444433
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.41 E-value=6.3 Score=29.69 Aligned_cols=29 Identities=10% Similarity=0.279 Sum_probs=9.7
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+.|++....+.+++|.+.+++..|+++|+
T Consensus 41 lVP~P~ii~aALrAcRRvND~a~AVR~lE 69 (108)
T PF02284_consen 41 LVPEPKIIEAALRACRRVNDFALAVRILE 69 (108)
T ss_dssp B---HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=86.27 E-value=3.7 Score=38.37 Aligned_cols=93 Identities=8% Similarity=-0.078 Sum_probs=68.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
+-|.+.|.+++|+..|....... +-|.+++..-..+|.+...+..|..-.+..+..+- .-...|..-+.+-...|...
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~~-P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~-~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAVY-PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK-LYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhhccchhHHHHHhhhhhccC-CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH-HHHHHHHHHHHHHHHHhhHH
Confidence 46899999999999999888763 34899999999999999999988887777664311 01234444444555567777
Q ss_pred HHHHHHHHhhhCCCC
Q 006281 523 AAFEVFNKSVNHDVM 537 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~ 537 (652)
+|.+-++..++..+.
T Consensus 183 EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 183 EAKKDCETVLALEPK 197 (536)
T ss_pred HHHHhHHHHHhhCcc
Confidence 777777777766554
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.49 E-value=17 Score=32.53 Aligned_cols=73 Identities=15% Similarity=0.181 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAEL 614 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 614 (652)
.+..+.+++...|++-++++...++.. .|.+..+|..-+.+....=+..+|.+-+..+++.+|....++...|
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrEl 305 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSREL 305 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHH
Confidence 456677788888999999999888877 7778888888888888888889999999999999998866666544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=85.48 E-value=13 Score=34.63 Aligned_cols=59 Identities=20% Similarity=0.213 Sum_probs=42.4
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSAN 394 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 394 (652)
+.+..+-+-++++++.++..=++-|+-||..+++.+|+.+.+.+++.+|.++...|...
T Consensus 106 ~~irlllky~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 106 TWIRLLLKYDPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred HHHHHHHccChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 34444555567777777777777788888888888888888888887777776665543
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.28 E-value=27 Score=31.17 Aligned_cols=18 Identities=11% Similarity=0.104 Sum_probs=9.4
Q ss_pred ccCCHHHHHHHHHHHHcC
Q 006281 308 VERRICEAKELGEVIVSG 325 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~ 325 (652)
..+++.+|.++|+++...
T Consensus 166 ~leqY~~Ai~iyeqva~~ 183 (288)
T KOG1586|consen 166 QLEQYSKAIDIYEQVARS 183 (288)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555555555555544
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=85.16 E-value=1.9 Score=23.74 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=17.1
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
.+..++..+...|++++|...+++..+..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344555555666666666666665555444
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=85.11 E-value=2.5 Score=27.62 Aligned_cols=32 Identities=19% Similarity=-0.032 Sum_probs=24.1
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...++-++.+.|++++|.+..+.+++..|++.
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 34667778888888888888888888888874
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.1e+02 Score=37.68 Aligned_cols=61 Identities=16% Similarity=0.060 Sum_probs=41.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+|....+...+.|.++.|...+-.+.+.+ -+.++-..++.+-..|+...|+.++++..+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~ 1730 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILS 1730 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 3467777777777888888877776665555 233555666777777888888877776653
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=84.85 E-value=24 Score=32.83 Aligned_cols=143 Identities=11% Similarity=0.079 Sum_probs=69.7
Q ss_pred HHHHhcCCHHHHHHHHHHH----HHCCCCCCHhhHHHHHHHHHcCCCHH-HHHHHHHHhhh-----CCCCccHHHHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNM----LEKGVAPDATTYTSLLEGLCQETNLQ-AAFEVFNKSVN-----HDVMLARSILSTFM 547 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~-----~~~~~~~~~~~~l~ 547 (652)
..+.+.|+..-|.++-.-+ .+.+..++......++..+...+.-+ +-.++.+++++ ....-++.....++
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a 97 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLA 97 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 3466777776665554433 34566667766666666665443221 22333333332 12233566777777
Q ss_pred HHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 548 ISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
..|.+.|++.+|+..|-.-... ....+..+.. ....+-.|..........+-.|...|+...|
T Consensus 98 ~~~~~e~~~~~A~~Hfl~~~~~--~~~~~~~ll~---------------~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A 160 (260)
T PF04190_consen 98 EKLWKEGNYYEAERHFLLGTDP--SAFAYVMLLE---------------EWSTKGYPSEADLFIARAVLQYLCLGNLRDA 160 (260)
T ss_dssp HHHHHTT-HHHHHHHHHTS-HH--HHHHHHHHHH---------------HHHHHTSS--HHHHHHHHHHHHHHTTBHHHH
T ss_pred HHHHhhccHHHHHHHHHhcCCh--hHHHHHHHHH---------------HHHHhcCCcchhHHHHHHHHHHHHhcCHHHH
Confidence 8888888887777665332110 0011111111 1122222333222233355567788999999
Q ss_pred HHHHHHHHHc
Q 006281 628 LLLLHALQEK 637 (652)
Q Consensus 628 ~~~~~~~~~~ 637 (652)
...++.+.++
T Consensus 161 ~~~~~~f~~~ 170 (260)
T PF04190_consen 161 NELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9988887776
|
; PDB: 3LKU_E 2WPV_G. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.59 E-value=10 Score=33.04 Aligned_cols=41 Identities=10% Similarity=0.157 Sum_probs=18.2
Q ss_pred CCHHHHHHHHHHhhhC---CCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 519 TNLQAAFEVFNKSVNH---DVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+++.+++.++++. +-.+|+.++..|+..+.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 3444444444444332 1133444444455554444444444
|
|
| >PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human | Back alignment and domain information |
|---|
Probab=84.17 E-value=61 Score=34.37 Aligned_cols=45 Identities=11% Similarity=0.073 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 333 VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 333 ~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
.+..++.....|+...+++....+.. +..+-..+.+.+...|-++
T Consensus 300 ~~e~~~~~i~~~d~~~vL~~~~~~~~-----~~w~aahladLl~~~g~L~ 344 (566)
T PF07575_consen 300 PLEQILLAIFEGDIESVLKEISSLFD-----DWWFAAHLADLLEHKGLLE 344 (566)
T ss_dssp TTHHHHHHHHTS--GGGHHHHHHH-------HHHHHHHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHcc-----chhHHHHHHHHHHhcCccc
Confidence 35566666667787777777665532 2334445555555555444
|
Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.85 E-value=9.2 Score=33.53 Aligned_cols=74 Identities=12% Similarity=0.078 Sum_probs=41.3
Q ss_pred HHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC--CCCcCHHHHHHHHHH
Q 006281 194 VFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR--ECKPDFIAYRIVAEE 270 (652)
Q Consensus 194 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~ 270 (652)
.-+..+.+.+.+.+++...+.-.+. .|.+......+++.++-.|++++|..-++-.-.. ...+...+|..++.+
T Consensus 6 ~t~seLL~~~sL~dai~~a~~qVka---kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 6 DTISELLDDNSLQDAIGLARDQVKA---KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc---CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 3344555566666666666655554 5555666666666677777777776655554432 122234455555443
|
|
| >PHA02875 ankyrin repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=83.84 E-value=32 Score=34.70 Aligned_cols=209 Identities=11% Similarity=0.041 Sum_probs=86.1
Q ss_pred HccCCHHHHHHHHHHHhhCCCCcCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChh--hHHHHHHHHHccCCH
Q 006281 237 CKGKRVEEAFKVLDELRIRECKPDFIA--YRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTN--DYREFILGLIVERRI 312 (652)
Q Consensus 237 ~~~g~~~~A~~~~~~m~~~~~~p~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~--~~~~ll~~~~~~~~~ 312 (652)
++.|+.+-+..++ +.|..|+... ..+.+...+..|+.+ +.+.+.+.|..|+.. .....+...+..|+.
T Consensus 10 ~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~ 81 (413)
T PHA02875 10 ILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDAVEEGDV 81 (413)
T ss_pred HHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHHHHCCCH
Confidence 4455554433333 3454444322 122333444556554 333334445444322 122344555566666
Q ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHH
Q 006281 313 CEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKV 390 (652)
Q Consensus 313 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~ 390 (652)
+.+..+++.-.......+..-.+.+..+...++. ++++.+.+.|..|+... -.+.+...+..|+.+.+..++
T Consensus 82 ~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll-- 155 (413)
T PHA02875 82 KAVEELLDLGKFADDVFYKDGMTPLHLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI-- 155 (413)
T ss_pred HHHHHHHHcCCcccccccCCCCCHHHHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH--
Confidence 6555444321110000011112333333444443 33444455555443221 112333444566655444433
Q ss_pred HHhCCCCc---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCChhhHHHHHHHHHHc
Q 006281 391 LSANDYFT---DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF---YNSLMEACCREDLLRPAKKLWDQMFAS 464 (652)
Q Consensus 391 ~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~---~~~ll~~~~~~g~~~~a~~~~~~~~~~ 464 (652)
+.|..+ |...++.+..+ +..|+.+ +.+.+.+.|..|+... ..+.+...+..|+.+ +.+.+.+.
T Consensus 156 --~~g~~~~~~d~~g~TpL~~A-~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~ 224 (413)
T PHA02875 156 --DHKACLDIEDCCGCTPLIIA-MAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKR 224 (413)
T ss_pred --hcCCCCCCCCCCCCCHHHHH-HHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHC
Confidence 333322 22233333333 3345543 4444555665554322 123444344555544 44445555
Q ss_pred CCCCCH
Q 006281 465 GCSGNL 470 (652)
Q Consensus 465 ~~~~~~ 470 (652)
|..++.
T Consensus 225 gad~n~ 230 (413)
T PHA02875 225 GADCNI 230 (413)
T ss_pred CcCcch
Confidence 655553
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.77 E-value=2.9 Score=25.29 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.+++.|...|...|++++|..++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 345555555555566666655555554
|
|
| >KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.54 E-value=48 Score=32.69 Aligned_cols=75 Identities=20% Similarity=0.190 Sum_probs=49.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 403 YNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 403 ~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
...|+.-|...|+..+|....+++----+ .....+.+++.+.-+.|+-+..+.+++.....| ..|-+.+-.+|.+
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLgmPfF-hHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg----lIT~nQMtkGf~R 586 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELGMPFF-HHEVVKKALVMVMEKKGDSTMILDLLKECFKSG----LITTNQMTKGFER 586 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhCCCcc-hHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC----ceeHHHhhhhhhh
Confidence 34567778888888888877776532212 256677888888888887777777777766554 3455556666544
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.54 E-value=41 Score=31.91 Aligned_cols=85 Identities=12% Similarity=0.024 Sum_probs=39.9
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----c
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC----REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----V 483 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~ 483 (652)
..+++..+...+......+. ......+...|. ...+...|.++|..+.+.|. ......|...|.. .
T Consensus 53 ~~~~~~~a~~~~~~a~~~~~---~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~g~---~~a~~~lg~~~~~G~gv~ 126 (292)
T COG0790 53 YPPDYAKALKSYEKAAELGD---AAALALLGQMYGAGKGVSRDKTKAADWYRCAAADGL---AEALFNLGLMYANGRGVP 126 (292)
T ss_pred ccccHHHHHHHHHHhhhcCC---hHHHHHHHHHHHhccCccccHHHHHHHHHHHhhccc---HHHHHhHHHHHhcCCCcc
Confidence 34567777777776665332 122222333222 22335556666665554442 2222223333333 2
Q ss_pred CCHHHHHHHHHHHHHCCCC
Q 006281 484 GEIEGALRLFHNMLEKGVA 502 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~ 502 (652)
.+..+|...|+...+.|..
T Consensus 127 ~d~~~A~~~~~~Aa~~g~~ 145 (292)
T COG0790 127 LDLVKALKYYEKAAKLGNV 145 (292)
T ss_pred cCHHHHHHHHHHHHHcCCh
Confidence 2555556666655555543
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=83.23 E-value=12 Score=32.64 Aligned_cols=72 Identities=15% Similarity=0.075 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---GVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
+.|.+.|-.+...+.--++.....|...|. ..+.+++..++.+..+. +-.+|+..+.+|+..+.+.|+++.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 334444444444443333444444443333 33455555555554432 2244555555555555555555544
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.36 E-value=2 Score=23.01 Aligned_cols=15 Identities=13% Similarity=0.127 Sum_probs=5.6
Q ss_pred HHHHhccccHHHHHH
Q 006281 580 LKSLADAREVEMAIE 594 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~ 594 (652)
+.++...|+.++|..
T Consensus 8 a~~~~~~G~~~eA~~ 22 (26)
T PF07721_consen 8 ARALLAQGDPDEAER 22 (26)
T ss_pred HHHHHHcCCHHHHHH
Confidence 333333333333333
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=82.07 E-value=77 Score=33.97 Aligned_cols=26 Identities=15% Similarity=0.156 Sum_probs=16.0
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCchh
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHSDS 575 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 575 (652)
+...|++++|++.++++.--|.++..
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP~~~~~ 540 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIPLDPSE 540 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-S-HHH
T ss_pred HHHcCCHHHHHHHHHhCCCCCCCHHH
Confidence 45788999999988887665543333
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=81.65 E-value=21 Score=27.08 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=42.6
Q ss_pred HHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 508 YTSLLEGLCQETNLQ--AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 508 ~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
|..--..|....+.+ +..+-++.+...+..|++.+..+.+++|.+.+++.-|.++++.+...
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 333334444433333 56777777888899999999999999999999999999999988774
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.47 E-value=2.2 Score=39.91 Aligned_cols=88 Identities=7% Similarity=-0.067 Sum_probs=49.3
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
..|.++.|++.|...+..++. ...+|..-..++.+.++...|++=+..... ++.....|-.-..+....|++++|...
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~-~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa~d 204 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPP-LAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAAHD 204 (377)
T ss_pred cCcchhhhhcccccccccCCc-hhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHHHH
Confidence 345566666666665555543 444555555556666666666665555544 333444444445555556666666666
Q ss_pred HHHHHhcCCC
Q 006281 596 IKWIQESSPT 605 (652)
Q Consensus 596 ~~~~~~~~~~ 605 (652)
+..+.+.+-+
T Consensus 205 l~~a~kld~d 214 (377)
T KOG1308|consen 205 LALACKLDYD 214 (377)
T ss_pred HHHHHhcccc
Confidence 6666655543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 85.7 bits (211), Expect = 2e-17
Identities = 101/647 (15%), Positives = 203/647 (31%), Gaps = 196/647 (30%)
Query: 63 HHSLALGFFNWASQQPNFTHSPLSYHSIL--------KSLSLSRQINAIDSVLKQVKVNK 114
HH + F Q Y IL + + S+L + +++
Sbjct: 4 HHHMD---FETGEHQ-------YQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH 53
Query: 115 I----TLDSSVYRFIIPSLIQGKNTQKAFSVFNEV----------KFNCEDIGPEICNSL 160
I S R L + + + F EV E P
Sbjct: 54 IIMSKDAVSGTLRLFWTLLSKQEEMVQKF--VEEVLRINYKFLMSPIKTEQRQPS----- 106
Query: 161 LAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKREN 220
+ + YI+ +++++ F+ + + KL Q L E+R +N
Sbjct: 107 ---MMTRMYIEQRDRLYND----NQVFAKY----NVSRLQPYLKLRQALL---ELRPAKN 152
Query: 221 SMINGSVIAVLIIHGF--CKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278
++I G GK A V ++ +CK DF + + + +
Sbjct: 153 ----------VLIDGVLGS-GKTW-VALDVCLSYKV-QCKMDFKIFWLN------LKNCN 193
Query: 279 EREVVLKKKRKL----------------GVAPRTNDYREFILGLIVERRICEAKELGEVI 322
E VL+ +KL + R + + + L+ + L ++
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--L--LV 249
Query: 323 VSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS- 381
+ +V NA + FN L T R K
Sbjct: 250 L-------LNVQNAKA-----WNA------FNL-----SCKILLT---------TRFKQV 277
Query: 382 -DEL-VEVYKVLSANDY---FTDMESYNVMVSFL-CTSGRLRE--------AYGVIQEMK 427
D L +S + + T E ++++ +L C L +I E
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESI 337
Query: 428 RKGLD-------PDVSFYNSLMEACCREDLLRPA--KKLWDQM--FASGCSGNLKTYNIL 476
R GL + +++E+ ++L PA +K++D++ F +++
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSL--NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI 395
Query: 477 --ISKFSEVGEIEGALRLFHN--MLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532
S+V + + H ++EK P +T + + + E ++ N+
Sbjct: 396 WFDVIKSDVMVV---VNKLHKYSLVEKQ--PKESTIS--IPSIYLELKVKLE----NEYA 444
Query: 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMA 592
H RSI+ + I L+ L + S +GH H LK++ + +
Sbjct: 445 LH-----RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---H---LKNIEHPERMTL- 492
Query: 593 IEHI----KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQ 635
+ ++++ ++ ++ + IL L L+
Sbjct: 493 FRMVFLDFRFLE-----------QKIRHDSTAWNASGSILNTLQQLK 528
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 81.4 bits (199), Expect = 4e-16
Identities = 28/217 (12%), Positives = 72/217 (33%), Gaps = 6/217 (2%)
Query: 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD---QMFASGCSGNLK 471
L + + L + + C D L A L L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531
YN ++ ++ G + + + + + G+ PD +Y + L+ + ++ E +
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQ 226
Query: 532 VNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVI---LLKSLADARE 588
++ + + +++ + ++S R L A ++ S V LL+ +
Sbjct: 227 MSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDG 286
Query: 589 VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625
+ ++ +++ EL + + S +
Sbjct: 287 RVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEK 323
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 73.3 bits (178), Expect = 1e-13
Identities = 37/356 (10%), Positives = 100/356 (28%), Gaps = 18/356 (5%)
Query: 279 EREVVLKKKRKL----GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGK----FTID 330
++ + ++L + ++ +++ L VE R+ + G + + +
Sbjct: 33 DKRTQQMRMQRLKAKLQMPFQSGEFKALTRRLQVEPRLLSKQMAGCLEDCTRQAPESPWE 92
Query: 331 DDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKR---NKSDELVEV 387
+ + L + + + L K + L+ V
Sbjct: 93 EQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVV 152
Query: 388 YKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447
+ ++ YN ++ G +E V+ +K GL PD+ Y + ++ R
Sbjct: 153 HHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGR 212
Query: 448 -EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506
+ ++ +QM G +L+S+ ++ ++ P
Sbjct: 213 QDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPV 272
Query: 507 TYTSLLEGLCQE----TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562
+ LL + + + + + + L + S + +
Sbjct: 273 NTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVK 332
Query: 563 LRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618
+ L ++L + + S L + +
Sbjct: 333 HARKTLKTLRDQWEKALCRAL--RETKNRLEREVYEGRFSLYPFLCLLDEREVVRM 386
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 652 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.84 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.83 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.8 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.79 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.78 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.76 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.75 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.74 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.74 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.71 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.69 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.67 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.66 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.66 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.65 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.64 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.64 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.64 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.64 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.63 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.62 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.6 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.57 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.57 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.56 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.54 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.52 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.51 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.49 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.42 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.41 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.4 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.39 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.33 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.25 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.22 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.21 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.2 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.19 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.17 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.16 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.16 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.16 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.16 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.15 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.14 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.13 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.12 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.12 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.11 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.1 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.1 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.06 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.06 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.06 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.04 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.0 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.99 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.95 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.95 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.91 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.9 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.89 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.89 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.86 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.86 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.85 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.84 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.83 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.83 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.82 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.81 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.8 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.79 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.79 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.79 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.79 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.78 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.76 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.75 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.75 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.71 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.7 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.7 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.69 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.68 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.68 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.67 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.67 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.67 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.67 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.65 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.64 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.63 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.59 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.57 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.56 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.56 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.56 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.56 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.55 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.55 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.54 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.51 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.51 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.48 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.47 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.43 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.43 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.42 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.41 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.4 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.4 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.39 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.39 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.39 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.33 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.33 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.32 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.27 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.26 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.23 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.21 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.2 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.17 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.17 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.16 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.14 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.05 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.04 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.97 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.91 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.9 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.87 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.81 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.79 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.78 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.76 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.71 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.58 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.55 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.53 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.38 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.24 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.17 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.95 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.92 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.83 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.81 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.81 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.78 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.75 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.71 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.71 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.66 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.42 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.18 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.16 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 96.11 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.05 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.92 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.58 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 95.31 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 95.31 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.3 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 95.3 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.07 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.46 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.31 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.03 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 94.01 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.86 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 93.6 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 93.57 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 93.41 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.17 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.16 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.38 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 91.85 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 91.68 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.35 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 91.02 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 90.88 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 90.81 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 89.24 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.91 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 88.62 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 88.07 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.01 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.89 | |
| 1wdy_A | 285 | 2-5A-dependent ribonuclease; hydrolase, RNA-bindin | 84.66 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 82.67 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 81.13 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-41 Score=357.24 Aligned_cols=489 Identities=10% Similarity=-0.015 Sum_probs=358.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
++...|+.++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..+|+.+... .+++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 157 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA 157 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence 56788889999999999999999999988854 477788888899999999999999999887543 45788889999
Q ss_pred HHHHhcCChhhHHHHHHHHHhC---------------CCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCch
Q 006281 162 AVLASDGYIDNALKMFDEMSHR---------------GVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGS 226 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~---------------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (652)
.+|.+.|++++|..+|+++... +..++..+|+.++.+|.+.|++++|.+.|+++.+. .|.+.
T Consensus 158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~p~~~ 234 (597)
T 2xpi_A 158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMV---DAKCY 234 (597)
T ss_dssp HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCH
T ss_pred HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---Cchhh
Confidence 9999999999999998853211 11223445555555555555555555555555554 33334
Q ss_pred hhHHHHHHHHHccCCHHHHHH--H-HHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 227 VIAVLIIHGFCKGKRVEEAFK--V-LDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~--~-~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
..+..+...+...++.+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+. .++..++..++
T Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~ 312 (597)
T 2xpi_A 235 EAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKA 312 (597)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHH
T ss_pred HHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHH
Confidence 444444433332222211111 0 222322222233334444455555555555555555554433 24444444444
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE 383 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 383 (652)
..+.+.|+ +++|+.+|+++.+.+. .+..++..++.++.+.|++++
T Consensus 313 ~~~~~~g~----------------------------------~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~ 357 (597)
T 2xpi_A 313 DTLFVRSR----------------------------------FIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNK 357 (597)
T ss_dssp HHHHHTTC----------------------------------HHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHH
T ss_pred HHHHHhcC----------------------------------HHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHH
Confidence 44444444 4555555555554442 256678888888999999999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHH
Q 006281 384 LVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFA 463 (652)
Q Consensus 384 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 463 (652)
|..+++.+.+... .+..+|+.++.+|.+.|++++|.++|+++.+... .+..+|+.++.+|.+.|++++|.++|+++.+
T Consensus 358 A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 358 LYLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999999886543 3788899999999999999999999999987643 2678999999999999999999999999988
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC----CCCcc
Q 006281 464 SGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH----DVMLA 539 (652)
Q Consensus 464 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~ 539 (652)
.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +..+|..++..|.+.|++++|.++|+++++. +..|+
T Consensus 436 ~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~ 513 (597)
T 2xpi_A 436 LF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEK 513 (597)
T ss_dssp TT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSG
T ss_pred hC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchh
Confidence 75 668889999999999999999999999999876433 7889999999999999999999999998876 44566
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 540 --RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 540 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
..+|..++.+|.+.|++++|.++++++.+ .|.++..+..++.+|.+.|++++|.+.++++.+.+|++.. .+..+..
T Consensus 514 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~l~~ 592 (597)
T 2xpi_A 514 PWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIM-ASDLLKR 592 (597)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChH-HHHHHHH
Confidence 77899999999999999999999999877 6778889999999999999999999999999999998844 4444766
Q ss_pred Hhh
Q 006281 617 SLS 619 (652)
Q Consensus 617 ~~~ 619 (652)
+|.
T Consensus 593 ~~~ 595 (597)
T 2xpi_A 593 ALE 595 (597)
T ss_dssp TTC
T ss_pred HHh
Confidence 654
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-39 Score=345.35 Aligned_cols=506 Identities=10% Similarity=0.001 Sum_probs=363.8
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
..+.+.+..+...+..+. .++...|+.++..|.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHH
Confidence 334455555555544332 256677778888888888888888888877643 45667777777788888888888
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHh
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELR 253 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 253 (652)
..+|+.+... .++..+++.++.+|.+.|++++|.++|+++... ... ..++.+.++ .
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-----~~~~~~~~~-----------~ 192 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPF------RKD-----EKNANKLLM-----------Q 192 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTT------C---------------C-----------C
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCc------ccc-----ccccccccc-----------c
Confidence 8887776543 456677777777777777777777777643221 100 000000000 1
Q ss_pred hCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHH--HHH-HHHHHcCCCCCC
Q 006281 254 IRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEA--KEL-GEVIVSGKFTID 330 (652)
Q Consensus 254 ~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~ 330 (652)
..+..++..+|+.++.+|.+.|++++|..+|++|.+.+.. +...+..+...+...+..+.+ ..+ +..+...+....
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 1233445666666667777777777777777666654311 122222222222221111111 111 222222222222
Q ss_pred HHHHHHHHHHHh-cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006281 331 DDVLNALIGSVS-SIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (652)
Q Consensus 331 ~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (652)
..+++.++..+. .|++++|.++|+++.+. +++..++..++..|.+.|++++|.++|+++.+.+.. +..+++.++.+
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~ 348 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLAS 348 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHH
Confidence 233444344443 36788888888887765 578999999999999999999999999999987654 77899999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
|.+.|++++|..+++++.+.. ..+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|
T Consensus 349 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 426 (597)
T 2xpi_A 349 LHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQA 426 (597)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3478899999999999999999999999999864 56788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+++|+++.+.+. .+..+|..++.+|.+.|++++|.++|+++++..+. ++.+|..++.+|.+.|++++|+++++++.+.
T Consensus 427 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 504 (597)
T 2xpi_A 427 ISAYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLL 504 (597)
T ss_dssp HHHHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 999999998643 37889999999999999999999999999987765 7889999999999999999999999998652
Q ss_pred ----CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 570 ----LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 570 ----~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+.. ...+..++.+|.+.|++++|++.++++.+.+|.. ...+..++.+|.+.|++++|.+.++++.+..
T Consensus 505 ~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 505 VKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTND-ANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp HHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 222 4578899999999999999999999999999877 4566669999999999999999999998763
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-27 Score=239.87 Aligned_cols=379 Identities=13% Similarity=0.087 Sum_probs=279.5
Q ss_pred HHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCH
Q 006281 198 KFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSV 277 (652)
Q Consensus 198 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~ 277 (652)
.+.+.|++++|.+.++.+.+. .|++...+..+...+.+.|++++|...++...+.. +.+..+|..+..++.+.|++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~ 83 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 445556666666666666555 45555555556666666666666666666655432 23555666666666666666
Q ss_pred HHHHHHHHHHHhcCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 278 FEREVVLKKKRKLGVAPR-TNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (652)
Q Consensus 278 ~~a~~~~~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m 356 (652)
++|...|+++.+. .|+ ...+..+..++...|++++|...++.+.+.
T Consensus 84 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------------------------- 130 (388)
T 1w3b_A 84 QEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY------------------------------- 130 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-------------------------------
T ss_pred HHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-------------------------------
Confidence 6666666666553 232 224455555555555555555544443322
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
. +.+...+..+...+...|++++|.+.|+++.+..+. +..+|..+...+...|++++|+..|+++.+.+.. +..
T Consensus 131 ---~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T 1w3b_A 131 ---N-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp ---C-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ---C-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHH
Confidence 1 112344555666777788888888888888776543 6778888999999999999999999998887533 567
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
.|..+...+...|++++|...+++..+.. +.+..++..+..+|...|++++|.+.|+++.+.... +..+|..+...+.
T Consensus 205 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T 1w3b_A 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHH
Confidence 78888888999999999999999888764 556788889999999999999999999999876433 5778888999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
+.|++++|.+.|+++++..+. +..++..++.++.+.|++++|++.++++.+ .|.....+..++.++.+.|++++|++.
T Consensus 283 ~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 283 EKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999999887764 778889999999999999999999999877 566777888999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
++++.+.+|+.... +..++..+...|+
T Consensus 362 ~~~a~~~~p~~~~a-~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRISPTFADA-YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHHH-HHHHHHHHHHTCC
T ss_pred HHHHHhhCCCCHHH-HHhHHHHHHHccC
Confidence 99999999987544 4448777766553
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=6.3e-27 Score=234.19 Aligned_cols=216 Identities=13% Similarity=0.082 Sum_probs=125.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
++..+...+...|++++|...|+++.+.++. +...|..+...+...|++++|+..|++....... +..++..+..++.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHHHHHHHHH
Confidence 3444444444555555555555555444322 4445555556666666666666666665554321 3555566666666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (652)
+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+.. ..+..++..+...+...|++++|.+
T Consensus 249 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 326 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVR 326 (388)
T ss_dssp HTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666666543 3345566666666666666666666666666542 2355566666666666666666666
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
.|+++++..+. +...+..++.++.+.|++++|.+.++++.+ +|..+..+..++..+...|
T Consensus 327 ~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 327 LYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 66666655443 455666666666666666666666666655 4555555656655554433
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.35 Aligned_cols=204 Identities=15% Similarity=0.167 Sum_probs=150.2
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC---------HHH
Q 006281 349 AIVFFNFMIEKGRVPTL-STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR---------LRE 418 (652)
Q Consensus 349 a~~~~~~m~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---------~~~ 418 (652)
+..+.+.+.+++..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..+|++||.+|++.+. +++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 34445555555554443 34677777888888888888888888877888888888888887776543 577
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
|.++|++|...|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 006281 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (652)
Q Consensus 499 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (652)
.|+.||..||++||.+|++.|++++|.++|++|.+.+..|+..+|+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888877777765
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=257.38 Aligned_cols=212 Identities=14% Similarity=0.156 Sum_probs=126.8
Q ss_pred HHHHHHHhhCCCCcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHc
Q 006281 246 FKVLDELRIRECKPDF-IAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVS 324 (652)
Q Consensus 246 ~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 324 (652)
..+.+.+.+++..+.. ..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|+..+....+
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~--------- 80 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATES--------- 80 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSS---------
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhh---------
Confidence 3444455544444332 245666666666666666666666666666666666666666666554432111
Q ss_pred CCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHH
Q 006281 325 GKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYN 404 (652)
Q Consensus 325 ~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 404 (652)
...++.+.|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||..+|+
T Consensus 81 ----------------~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn 144 (501)
T 4g26_A 81 ----------------SPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYG 144 (501)
T ss_dssp ----------------SCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred ----------------hhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceeh
Confidence 0011234556666666666666666666666666666666666666666666666666666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 405 VMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 405 ~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
.+|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|+.++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 145 ~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 145 PALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 666666666666666666666666666666666666666666666666666666666666666666666666666654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.1e-25 Score=229.48 Aligned_cols=260 Identities=16% Similarity=0.070 Sum_probs=190.0
Q ss_pred cCChhHHHHHHHHHHH-----cCCC--------CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 006281 343 SIDPRSAIVFFNFMIE-----KGRV--------PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSF 409 (652)
Q Consensus 343 ~~~~~~a~~~~~~m~~-----~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~ 409 (652)
.|++++|+..|+++.+ .... .+...+..+...+...|++++|...++.+.+.... ...+..+..+
T Consensus 202 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~ 279 (514)
T 2gw1_A 202 PESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALI 279 (514)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHH
Confidence 5677777777777766 2111 12445666677777888888888888887776543 6677777888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 410 LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 410 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
+...|++++|...++++...... +..++..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus 280 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 357 (514)
T 2gw1_A 280 MADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDC 357 (514)
T ss_dssp HHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHH
T ss_pred HHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHH
Confidence 88888888888888887766432 55677777778888888888888888887764 44567777788888888888888
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-c----HHHHHHHHHHHHh---cCCHHHHHH
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-A----RSILSTFMISLCR---RGHFLVATK 561 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~---~g~~~~A~~ 561 (652)
...++++.+.... +...+..+...+...|++++|.+.+++++...+.. + ...+..++.++.. .|++++|.+
T Consensus 358 ~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~ 436 (514)
T 2gw1_A 358 ETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATN 436 (514)
T ss_dssp HHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHH
T ss_pred HHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHH
Confidence 8888887765322 45677777778888888888888888776644321 1 3367777888888 888888888
Q ss_pred HHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 562 LLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++++.. .|..+..+..++.++...|++++|.+.++++.+.+|+..
T Consensus 437 ~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 483 (514)
T 2gw1_A 437 LLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTME 483 (514)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHH
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccH
Confidence 8887766 566667777888888888888888888888888887764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-24 Score=220.53 Aligned_cols=448 Identities=10% Similarity=-0.047 Sum_probs=315.0
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (652)
...+..+...+.+.|++++|+..|+++.+.+ |+...|..+..++...|++++|.+.++++.+. .|.+..++..+.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~ 80 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALEL---KPDYSKVLLRRA 80 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhcc---ChHHHHHHHHHH
Confidence 4456677777888888888888888887764 57777777777788888888888888887776 566677777777
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHH
Q 006281 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRIC 313 (652)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~ 313 (652)
.++.+.|++++|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+..-....
T Consensus 81 ~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~------- 152 (514)
T 2gw1_A 81 SANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERK------- 152 (514)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC------------------------------
T ss_pred HHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHH-------
Confidence 788888888888888887776542 233333344444433333333333333333333222222111100000
Q ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChHHHHHHHHH
Q 006281 314 EAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK---RNKSDELVEVYKV 390 (652)
Q Consensus 314 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~ 390 (652)
......++.......+..+.... ... ....+.+...+......+.. .|++++|...|+.
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 214 (514)
T 2gw1_A 153 ---------DKQENLPSVTSMASFFGIFKPEL---TFA------NYDESNEADKELMNGLSNLYKRSPESYDKADESFTK 214 (514)
T ss_dssp -------------CCCCHHHHHHHHTTSCCCC---CCS------SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHH
T ss_pred ---------hhccCCchhHHHHHHHhhcCHHH---HHH------HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHH
Confidence 00001111111111111000000 000 00001123334444444444 8999999999999
Q ss_pred HHh-----C--CC------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 391 LSA-----N--DY------FTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 391 ~~~-----~--~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
+.+ . .. +.+..++..+...+...|++++|...|+++.+.. |+...+..+...+...|++++|.+.
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~ 292 (514)
T 2gw1_A 215 AARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNY 292 (514)
T ss_dssp HHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGH
T ss_pred HHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHH
Confidence 887 3 11 1245678888999999999999999999999875 3488889999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
++.+.+.. +.+...+..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++++++..+.
T Consensus 293 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 370 (514)
T 2gw1_A 293 FDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE 370 (514)
T ss_dssp HHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc
Confidence 99999875 567888999999999999999999999999986543 5678888999999999999999999999887665
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch------hHHHHHHHHhc---cccHHHHHHHHHHHHhcCCCCc
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD------SHVILLKSLAD---AREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~------~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+...+..++.++...|++++|.+.++++.. .|..+. .+..++.++.. .|++++|++.++++.+..|...
T Consensus 371 -~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~ 449 (514)
T 2gw1_A 371 -APEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSE 449 (514)
T ss_dssp -CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCH
T ss_pred -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccH
Confidence 677899999999999999999999998866 343433 88899999999 9999999999999999999875
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..+..++.+|...|++++|.+.++++.+..
T Consensus 450 -~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 450 -QAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred -HHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 444559999999999999999999888763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-22 Score=205.51 Aligned_cols=346 Identities=13% Similarity=0.062 Sum_probs=237.1
Q ss_pred CCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHH
Q 006281 222 MINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYRE 301 (652)
Q Consensus 222 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 301 (652)
.|.+...+..++..+.+.|++++|..+|+.+.+.. +.+..+|..+..++...|++++|...|+++.+.+.. +...+..
T Consensus 22 ~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~ 99 (450)
T 2y4t_A 22 SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQ 99 (450)
T ss_dssp -CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHH
Confidence 55666777777777777888888888887776642 235667777777777777777777777776654311 2233333
Q ss_pred HHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCC-H---HHHHHHHHHHHh
Q 006281 302 FILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPT-L---STLSNLSKNLCK 377 (652)
Q Consensus 302 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~l~~~~~~ 377 (652)
+...+...|++++|...++.+... .|+ . ..+..+...+.
T Consensus 100 l~~~~~~~g~~~~A~~~~~~~~~~------------------------------------~~~~~~~~~~~~~l~~~~~- 142 (450)
T 2y4t_A 100 RGHLLLKQGKLDEAEDDFKKVLKS------------------------------------NPSENEEKEAQSQLIKSDE- 142 (450)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTS------------------------------------CCCHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc------------------------------------CCCChhhHHHHHHHHHHHH-
Confidence 444444444444444443333221 111 1 22222222210
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHH
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKL 457 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~ 457 (652)
...+..+...+...|++++|+..|+++.+... .+..++..+..++.+.|++++|.++
T Consensus 143 ----------------------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~ 199 (450)
T 2y4t_A 143 ----------------------MQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISD 199 (450)
T ss_dssp ----------------------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHH
T ss_pred ----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHH
Confidence 01223335557778888888888888887643 3677788888888888888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH------------HHHHHcCCCHHHHH
Q 006281 458 WDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL------------LEGLCQETNLQAAF 525 (652)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l------------~~~~~~~g~~~~a~ 525 (652)
|+++.+.. +.+..+|..+..+|...|++++|+..|+++.+.... +...+..+ ...|...|++++|.
T Consensus 200 ~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~ 277 (450)
T 2y4t_A 200 LKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDAT 277 (450)
T ss_dssp HHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 88888764 567788888888888888888888888888865322 34444444 77888889999999
Q ss_pred HHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 526 EVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 526 ~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
..|++++...+. + ...+..++.++.+.|++++|++.++++.. .|..+..+..++.+|...|++++|+..++++.
T Consensus 278 ~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al 356 (450)
T 2y4t_A 278 SKYESVMKTEPS-IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ 356 (450)
T ss_dssp HHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCc-chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999988876544 3 34678888889999999999999998866 67778888899999999999999999999999
Q ss_pred hcCCCCcHHHHHHHH------------HHhhcCC-----CCchHHHHHHH
Q 006281 601 ESSPTMLQEISAELF------------ASLSSSS-----YPEPILLLLHA 633 (652)
Q Consensus 601 ~~~~~~~~~~~~~l~------------~~~~~~g-----~~~~a~~~~~~ 633 (652)
+.+|+.. ..+..+. ..|...| +.+++.+.+++
T Consensus 357 ~~~p~~~-~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 357 EHNENDQ-QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp TTSSSCH-HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HhCcchH-HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 9888874 4444365 3355555 55666666665
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-24 Score=221.60 Aligned_cols=433 Identities=12% Similarity=0.027 Sum_probs=247.2
Q ss_pred hhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHH
Q 006281 154 PEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLII 233 (652)
Q Consensus 154 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~ 233 (652)
...|..+...+.+.|++++|+..|+++.+.+ +.+...+..+..++...|++++|++.++++... .|.+..++..+.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEI---KPDHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCchHHHHHHHH
Confidence 3467777888888888888888888888764 235677777788888888888888888888877 567777888888
Q ss_pred HHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc------CCCCChhhHHHHHHHHH
Q 006281 234 HGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL------GVAPRTNDYREFILGLI 307 (652)
Q Consensus 234 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~p~~~~~~~ll~~~~ 307 (652)
.++...|++++|.+.|+.+.. .|+.. ...+..+...+...+|...++.+... ...|+. ..+..+.
T Consensus 101 ~~~~~~g~~~~A~~~~~~~~~---~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~ 171 (537)
T 3fp2_A 101 SANESLGNFTDAMFDLSVLSL---NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFF 171 (537)
T ss_dssp HHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHhc---CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHH
Confidence 888888888888888864322 22221 22234455555667778887777553 122222 2333444
Q ss_pred ccCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhc---------CChhHHHHHHHHHHHcCCCCC------HHHHHHH
Q 006281 308 VERRICEAKELGEVIVSGKFTIDDD-VLNALIGSVSS---------IDPRSAIVFFNFMIEKGRVPT------LSTLSNL 371 (652)
Q Consensus 308 ~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---------~~~~~a~~~~~~m~~~~~~~~------~~~~~~l 371 (652)
...+.+.+...+..... ..+... ....+...+.. +++++|+.+++.+.+...... ..++..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 44555444333221111 111111 22222222221 245666666666654432211 1234444
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL 451 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~ 451 (652)
...+...|++++|...++...+.. |+...+..+...+...|++++|...|+++.+.... +..++..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 455556666666666666666543 33555666666666666666666666666655322 455566666666666666
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
++|.+.++++.+.. +.+...+..+..+|...|++++|...++++.+.... +...+..+...+...|++++|.+.|+++
T Consensus 327 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 66666666666553 334555666666666666666666666666654222 3445556666666666666666666665
Q ss_pred hhCCCC-----ccHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 532 VNHDVM-----LARSILSTFMISLCRR----------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 532 ~~~~~~-----~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
++..+. .....+.....++... |++++|+..++++.. .|.++..+..++.++...|++++|++.
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 484 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIEL 484 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHH
Confidence 543311 1112233344555555 666666666666655 455555666666666666666666666
Q ss_pred HHHHHhcCCCC
Q 006281 596 IKWIQESSPTM 606 (652)
Q Consensus 596 ~~~~~~~~~~~ 606 (652)
++++.+..|..
T Consensus 485 ~~~al~~~~~~ 495 (537)
T 3fp2_A 485 FEDSAILARTM 495 (537)
T ss_dssp HHHHHHHC--C
T ss_pred HHHHHHhCCCc
Confidence 66666666655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-22 Score=204.96 Aligned_cols=369 Identities=11% Similarity=0.024 Sum_probs=185.8
Q ss_pred ccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHH
Q 006281 190 IGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAE 269 (652)
Q Consensus 190 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 269 (652)
..+..+...+.+.|++++|+..|+++... .|.+..++..+..++...|++++|...|+++.+.+. .+...+..+..
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 102 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDG---DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence 33444444444455555555555554443 344445555555555555555555555555554321 13445555555
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCC
Q 006281 270 EFKLMGSVFEREVVLKKKRKLGVAPRT----NDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSID 345 (652)
Q Consensus 270 ~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 345 (652)
+|.+.|++++|...|+++.+.. |+. ..+..+...+...+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~----------------------------------- 145 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQR----------------------------------- 145 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH-----------------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHH-----------------------------------
Confidence 5666666666666665555432 221 12222222111100
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQE 425 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 425 (652)
+..+...+...|++++|...|+.+.+.... +..++..+..+|...|++++|+..|++
T Consensus 146 ----------------------~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 146 ----------------------LRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp ----------------------HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred ----------------------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 111112233344444444444444433221 334444444444444444444444444
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHH
Q 006281 426 MKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL------------ISKFSEVGEIEGALRLF 493 (652)
Q Consensus 426 ~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~ 493 (652)
+.+... .+..++..+..++...|++++|.+.|+++.+.. +.+...+..+ ...|...|++++|...|
T Consensus 203 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 203 ASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 443321 134444444444444555555555554444432 2222223222 55666666677777766
Q ss_pred HHHHHCCCCCC-----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 494 HNMLEKGVAPD-----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 494 ~~m~~~~~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+++.+. .|+ ...+..+..++.+.|++++|...+++++...+. +...+..++.+|...|++++|.+.++++.+
T Consensus 281 ~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 281 ESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 666653 233 235566666666677777777777766655443 556666666677777777777777766655
Q ss_pred -CCCCchhHHHHHHH------------Hhccc-----cHHHHHHHHHH-HHhcCCCCc---------HHHHHHHHHHhhc
Q 006281 569 -DLGHSDSHVILLKS------------LADAR-----EVEMAIEHIKW-IQESSPTML---------QEISAELFASLSS 620 (652)
Q Consensus 569 -~~~~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~-~~~~~~~~~---------~~~~~~l~~~~~~ 620 (652)
.|.++..+..++.+ |...| +.+++.+.+++ +.+..|+.. ...+..+..+|..
T Consensus 358 ~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~a~~~~~~i~~ay~~ 437 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEV 437 (450)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHHHHHHHHHHHHHHHH
Confidence 45555555555532 33333 55677777776 566665532 2234456666666
Q ss_pred CCCCchH
Q 006281 621 SSYPEPI 627 (652)
Q Consensus 621 ~g~~~~a 627 (652)
.|+.+++
T Consensus 438 L~d~~~r 444 (450)
T 2y4t_A 438 LSDPEMR 444 (450)
T ss_dssp SSGGGGC
T ss_pred hCCHHHH
Confidence 6665544
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-22 Score=209.57 Aligned_cols=429 Identities=10% Similarity=0.028 Sum_probs=281.8
Q ss_pred HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
...+..+...+.+.|++++|++.|+++....+. ++.+|..+..+|.+.|++++|+..|+++.+.+ +.+...+..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 456677777888888888888888888776432 66778888888888888888888888887764 2245667777777
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhC------CCCcCHHHHHHHHHHHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIR------ECKPDFIAYRIVAEEFK 272 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~ 272 (652)
+...|++++|...|+.+... |.... ..+..+...+....|...++.+... ...|+.. .+..+.
T Consensus 103 ~~~~g~~~~A~~~~~~~~~~----~~~~~---~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~----~~~~~~ 171 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSLN----GDFDG---ASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNT----SLASFF 171 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHH----HHHHHH
T ss_pred HHHcCCHHHHHHHHHHHhcC----CCCCh---HHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHh----HHHHHH
Confidence 88888888888888643322 22111 1233445556667788888877553 1223333 334445
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHH-Hc--------cCCHHHHHHHHHHHHcCCCCCCHH------HHHHH
Q 006281 273 LMGSVFEREVVLKKKRKLGVAPRTNDYREFILGL-IV--------ERRICEAKELGEVIVSGKFTIDDD------VLNAL 337 (652)
Q Consensus 273 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~-~~--------~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l 337 (652)
...+.+.+...+..... ..+....+...+..+ .. .+++++|..+++.+.+..+..... .+..+
T Consensus 172 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 172 GIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYT 249 (537)
T ss_dssp HTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred HhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHH
Confidence 55666555444322211 122222222222222 11 136778888888877765443221 11111
Q ss_pred -HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH
Q 006281 338 -IGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL 416 (652)
Q Consensus 338 -~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 416 (652)
......|++++|...++...+.. |+...+..+...+...|++++|...++.+.+.... +..+|..+...+...|++
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 326 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDY 326 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCH
Confidence 12244578888888888887754 34677777777888888888888888887776543 667788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 417 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
++|+..|+++.+.... +...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+++
T Consensus 327 ~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 327 KNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 8888888888776433 45677778888888888888888888888764 556677888888888888888888888887
Q ss_pred HHCCCC-----CCHhhHHHHHHHHHcC----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 497 LEKGVA-----PDATTYTSLLEGLCQE----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 497 ~~~~~~-----p~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
.+.... .....+..+...+... |++++|...|+++++..+. +...+..++.++.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR-SEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHH
Confidence 753211 1112234445566666 8888888888888877665 66778888888888888888888
Q ss_pred HHHHhhh
Q 006281 562 LLRGLSS 568 (652)
Q Consensus 562 ~~~~~~~ 568 (652)
.++++.+
T Consensus 484 ~~~~al~ 490 (537)
T 3fp2_A 484 LFEDSAI 490 (537)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888777
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-18 Score=171.62 Aligned_cols=316 Identities=11% Similarity=0.031 Sum_probs=232.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Q 006281 260 DFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIG 339 (652)
Q Consensus 260 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 339 (652)
|+..+..+...+...|++++|...|+++.+... .+...+..+..++...|++++|...++.+.+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------- 67 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK------------- 67 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 455667777778888888888888887766432 234455556666666666666666665554432
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCC---CcCHHHHHHH----------
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDY---FTDMESYNVM---------- 406 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l---------- 406 (652)
+.+...+..+...+...|++++|...++.+.+... . +...+..+
T Consensus 68 ----------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ 124 (359)
T 3ieg_A 68 ----------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQE-EKEAESQLVKADEMQRLR 124 (359)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccC-hHHHHHHHHHHHHHHHHH
Confidence 12445566666777777777777777777776543 2 33344333
Q ss_pred --HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 407 --VSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 407 --i~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
...+...|++++|+..++++.+... .+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|
T Consensus 125 ~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 125 SQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 5778888999999999999887743 367788888888999999999999999988775 667888888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHH------------HHHHHHHcCCCHHHHHHHHHHhhhCCCCccH----HHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYT------------SLLEGLCQETNLQAAFEVFNKSVNHDVMLAR----SILSTFMI 548 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~ 548 (652)
++++|...|++..+.... +...+. .+...+.+.|++++|...+++++...+. +. ..+..+..
T Consensus 203 ~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHH
Confidence 999999999998875322 333332 2356688899999999999998887655 33 33556788
Q ss_pred HHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 549 SLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
++...|++++|.+.++++.+ .|.++..+..++.++...|++++|++.++++.+.+|+... ....+..+
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~-~~~~l~~~ 349 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ-IREGLEKA 349 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH-HHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH-HHHHHHHH
Confidence 89999999999999998877 6778888889999999999999999999999999988743 34435443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-18 Score=171.90 Aligned_cols=291 Identities=11% Similarity=0.045 Sum_probs=239.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+..|++++|+..|+.+.+... .+...+..+...+...|++++|...++.+.+..+. +...+..+..++...|++++|.
T Consensus 14 ~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~ 91 (359)
T 3ieg_A 14 LAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLLLKQGKLDEAE 91 (359)
T ss_dssp HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHHHHcCChHHHH
Confidence 445566666666666665432 35778888889999999999999999999887543 6788999999999999999999
Q ss_pred HHHHHHHHcCCC--CCHHHHHHH------------HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006281 421 GVIQEMKRKGLD--PDVSFYNSL------------MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEI 486 (652)
Q Consensus 421 ~~~~~~~~~~~~--p~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 486 (652)
..|+++.+.... .+...+..+ ...+...|++++|.+.++++.+.. +.+...+..+..+|...|++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 170 (359)
T 3ieg_A 92 DDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEP 170 (359)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCH
Confidence 999999876320 134444444 577889999999999999999875 66788999999999999999
Q ss_pred HHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH------------HHHHHHHhcC
Q 006281 487 EGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS------------TFMISLCRRG 554 (652)
Q Consensus 487 ~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------~l~~~~~~~g 554 (652)
++|...++++.+... .+..++..+...+...|++++|...|+++++..+. +...+. .++..+.+.|
T Consensus 171 ~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 248 (359)
T 3ieg_A 171 RKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDG 248 (359)
T ss_dssp HHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999997643 37888999999999999999999999999887765 333333 2367789999
Q ss_pred CHHHHHHHHHHhhh-CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 555 HFLVATKLLRGLSS-DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
++++|.+.++++.. .|.++. .+..++.++...|++++|++.++++.+.+|.... .+..++.++...|++++|.+
T Consensus 249 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 249 RYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVN-ALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp CHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHH-HHHHHHHHHHHcCCHHHHHH
Confidence 99999999999877 555443 2446889999999999999999999999998854 44459999999999999999
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
.++++.+.
T Consensus 328 ~~~~a~~~ 335 (359)
T 3ieg_A 328 DYEAAQEH 335 (359)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhc
Confidence 99988875
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=7.9e-19 Score=171.06 Aligned_cols=276 Identities=12% Similarity=-0.033 Sum_probs=211.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGV 422 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~ 422 (652)
|++++|+.+|+++.+... .+...+..++..+...|++++|..+++.+.+.... +...|..+...+...| ++++|...
T Consensus 36 g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~A~~~ 113 (330)
T 3hym_B 36 CDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAVGCYYLMVGHKNEHARRY 113 (330)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 344444444444443321 13334455556677888888888888888776543 6677888888888888 89999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006281 423 IQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA 502 (652)
Q Consensus 423 ~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~ 502 (652)
|++..+.... +...|..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|...++++.+....
T Consensus 114 ~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~ 191 (330)
T 3hym_B 114 LSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE 191 (330)
T ss_dssp HHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred HHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC
Confidence 9988876432 56678888888889999999999999888774 445677777888899999999999999998876433
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC--------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD--------VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
+...+..+...+...|++++|...+++++... ......++..++.++...|++++|++.++++.. .|..+
T Consensus 192 -~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 270 (330)
T 3hym_B 192 -DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270 (330)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCS
T ss_pred -ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccch
Confidence 67788888889999999999999999887642 123456888999999999999999999999877 67788
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh-hcCCCCc
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL-SSSSYPE 625 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~ 625 (652)
..+..++.++...|++++|++.++++.+.+|+.... +..++.++ ...|+.+
T Consensus 271 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 271 STYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFS-VTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHH-HHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHH-HHHHHHHHHHHhCchh
Confidence 889999999999999999999999999999987544 44488777 4555543
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=3e-17 Score=170.76 Aligned_cols=182 Identities=12% Similarity=0.039 Sum_probs=89.7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-H-hhHHHHHHHHHcCCCHHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD-A-TTYTSLLEGLCQETNLQAAFEVFNK 530 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~-~-~~~~~l~~~~~~~g~~~~a~~~~~~ 530 (652)
+|..++++..+.-.+.+...|..++..+.+.|++++|..+|+++++. .|+ . ..|..++..+.+.|++++|.++|++
T Consensus 304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 381 (530)
T 2ooe_A 304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKK 381 (530)
T ss_dssp HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 55555555554211334555555555555555555555555555543 222 1 3455555555555555555555555
Q ss_pred hhhCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC--
Q 006281 531 SVNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-- 606 (652)
Q Consensus 531 ~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-- 606 (652)
+++..+. +...+...+.. +...|+.++|.++|++..+ .|.++..|..++..+.+.|+.++|..+++++....|.+
T Consensus 382 Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~ 460 (530)
T 2ooe_A 382 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 460 (530)
T ss_dssp HHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGG
T ss_pred HHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHH
Confidence 5544322 22222222211 2235555555555555544 34445555555555555555555655555555543322
Q ss_pred -cHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 607 -LQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 607 -~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...+|...+......|+.+.+..+.+++.+.
T Consensus 461 ~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 461 KSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp GCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2334444444445555555555555555443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.2e-18 Score=169.65 Aligned_cols=270 Identities=10% Similarity=-0.026 Sum_probs=233.2
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
..+...+..+...+...|++++|.++|+.+.+..+. +...+..++.++...|++++|..+++++.+.... +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 345556777778888999999999999999887554 5667778889999999999999999999987533 67788889
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 442 MEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 442 l~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
...+...| ++++|.+.|+++.+.. +.+...|..+...|...|++++|...|+++.+.... +...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence 99999999 9999999999999875 556788999999999999999999999999976433 45667779999999999
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----------CCCchhHHHHHHHHhccccHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD----------LGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~~l~~~~~~~g~~~ 590 (652)
+++|.+.++++++..+. +...+..++..+...|++++|...++++... +..+..+..++.++...|+++
T Consensus 175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 99999999999988876 7788999999999999999999999988652 445678889999999999999
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|++.++++.+..|......+. ++.++...|++++|.+.++++.+.
T Consensus 254 ~A~~~~~~a~~~~~~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 254 EALDYHRQALVLIPQNASTYSA-IGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHHHHHHHHHHSTTCSHHHHH-HHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHHHHHHHHHhhCccchHHHHH-HHHHHHHhccHHHHHHHHHHHHcc
Confidence 9999999999999987655554 999999999999999999966543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-16 Score=159.88 Aligned_cols=241 Identities=14% Similarity=0.079 Sum_probs=147.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHH
Q 006281 346 PRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLR 417 (652)
Q Consensus 346 ~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~ 417 (652)
.++|+..|+...+.+ +...+..+...|.. .++.++|.+.|++..+.+ +...+..+...|.. .++++
T Consensus 167 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~ 240 (490)
T 2xm6_A 167 YVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYT 240 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 334444444443332 34444444445554 566666666666666553 44556666666664 56677
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-----GEIEG 488 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~ 488 (652)
+|..+|++..+.| +...+..+...+.. .++.++|.+.|+...+.| +...+..+...|... +++++
T Consensus 241 ~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~ 314 (490)
T 2xm6_A 241 QSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQ 314 (490)
T ss_dssp HHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHH
T ss_pred HHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHH
Confidence 7777777666553 34455555555555 667777777777766543 344555566666655 67777
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHH
Q 006281 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQET---NLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATK 561 (652)
Q Consensus 489 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~ 561 (652)
|+..|++..+.| +...+..+...|...| ++++|.++|+++.+.+ ++..+..+...|.. .+++++|.+
T Consensus 315 A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 388 (490)
T 2xm6_A 315 AISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAI 388 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777777776654 3445555666665545 6677777777766653 45566667777766 677777777
Q ss_pred HHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCC
Q 006281 562 LLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 605 (652)
++++..+. .++.++..++..|.. .+++++|...++++.+.+|+
T Consensus 389 ~~~~A~~~-~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 389 WMRKAAEQ-GLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp HHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHhC-CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 77776653 345666677777766 67777777777777777643
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.84 E-value=3.4e-15 Score=160.26 Aligned_cols=434 Identities=11% Similarity=0.103 Sum_probs=315.5
Q ss_pred HHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCC--CccCHHhHHHHHHHHHcCCChhHHHHHHHH
Q 006281 68 LGFFNWASQ-QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNK--ITLDSSVYRFIIPSLIQGKNTQKAFSVFNE 144 (652)
Q Consensus 68 ~~~f~~~~~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~ 144 (652)
.++.+|... .-.-..++.--....++|...|.+.+|.++++++.-.+ ..-+....+.|+.+..+. +..+..++...
T Consensus 968 R~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~k 1046 (1630)
T 1xi4_A 968 RPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINR 1046 (1630)
T ss_pred HHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHH
Confidence 356666422 11223455556778899999999999999999998432 113456677788777777 56777777666
Q ss_pred HHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHH-hcCcHHHHHHHHHHHHhccCCCC
Q 006281 145 VKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFC-ENAKLGQVLSMLDEVRKRENSMI 223 (652)
Q Consensus 145 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~ 223 (652)
... .....+...+...|.+++|..+|++.. .+...+..+. ..|++++|.++.+++
T Consensus 1047 Ld~-------~d~~eIA~Iai~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv-------- 1102 (1630)
T 1xi4_A 1047 LDN-------YDAPDIANIAISNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC-------- 1102 (1630)
T ss_pred hhh-------ccHHHHHHHHHhCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc--------
Confidence 642 224457888899999999999999963 1222223333 678999999998865
Q ss_pred CchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHH
Q 006281 224 NGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFI 303 (652)
Q Consensus 224 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll 303 (652)
..+.+|..+..++...|++++|.+.|.+. -|...|..++.++.+.|++++|.+.|...++.. ++....+.+.
T Consensus 1103 n~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~La 1174 (1630)
T 1xi4_A 1103 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELI 1174 (1630)
T ss_pred CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHH
Confidence 33678889999999999999999999664 378889999999999999999999999887765 3333344588
Q ss_pred HHHHccCCHHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChH
Q 006281 304 LGLIVERRICEAKELGEVIVSGKFTIDDD-VLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSD 382 (652)
Q Consensus 304 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 382 (652)
.+|.+.++++....+. . .++.. .++..-..+..|++++|..+|... ..|..+...+++.|+++
T Consensus 1175 faYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q 1238 (1630)
T 1xi4_A 1175 FALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQ 1238 (1630)
T ss_pred HHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHH
Confidence 8999999888644432 2 22333 344333446678999999999985 47999999999999999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHH
Q 006281 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMF 462 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 462 (652)
.|.+.+++.. +..+|..+..+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++...
T Consensus 1239 ~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL 1307 (1630)
T 1xi4_A 1239 AAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAAL 1307 (1630)
T ss_pred HHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 9999998772 6689999999999999999998876643 2356677789999999999999999998888
Q ss_pred HcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 463 ASGCSGNLKTYNILISKFSEV--GEIEGALRLFHNMLEKGVAP------DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 463 ~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
... +-....|+-|...|++. ++..+++++|..-. .+.| +...|.-++..|.+.|+++.|....-+-...
T Consensus 1308 ~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~ 1384 (1630)
T 1xi4_A 1308 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTD 1384 (1630)
T ss_pred ccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHh
Confidence 665 55566777777777764 34455555555332 2222 4567888999999999999988333221110
Q ss_pred -----------CCCccHHHHHHHHHHHHhcC---------------CHHHHHHHHH
Q 006281 535 -----------DVMLARSILSTFMISLCRRG---------------HFLVATKLLR 564 (652)
Q Consensus 535 -----------~~~~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~ 564 (652)
....++.+|...+..|...+ +++++.+++.
T Consensus 1385 a~~~~~Fk~~i~kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~ 1440 (1630)
T 1xi4_A 1385 AWKEGQFKDIITKVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFS 1440 (1630)
T ss_pred hhhhHHHHHHhcccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHH
Confidence 11236677777777777666 7777777776
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.3e-16 Score=159.04 Aligned_cols=223 Identities=12% Similarity=0.030 Sum_probs=154.9
Q ss_pred HHHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHH
Q 006281 366 STLSNLSKNLCK----RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSF 437 (652)
Q Consensus 366 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~ 437 (652)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.| +...
T Consensus 220 ~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a 293 (490)
T 2xm6_A 220 LGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDG 293 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHH
Confidence 344444444544 567777777777777654 45566667777776 788888888888887664 4556
Q ss_pred HHHHHHHHHhc-----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHhhHH
Q 006281 438 YNSLMEACCRE-----DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG---EIEGALRLFHNMLEKGVAPDATTYT 509 (652)
Q Consensus 438 ~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~m~~~~~~p~~~~~~ 509 (652)
+..+...|... +++++|...|++..+.| +...+..+...|...| ++++|++.|++..+.| +...+.
T Consensus 294 ~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 367 (490)
T 2xm6_A 294 QYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQF 367 (490)
T ss_dssp HHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHH
Confidence 66677777766 78888888888888764 4456677777777655 7788888888888764 567777
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCC----CchhHH
Q 006281 510 SLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLG----HSDSHV 577 (652)
Q Consensus 510 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~ 577 (652)
.+...|.. .+++++|.+.|+++.+.+ ++..+..+...|.. .+++++|.++++++.+..+ ++....
T Consensus 368 ~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~ 444 (490)
T 2xm6_A 368 NLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNI 444 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHH
Confidence 78888877 788999999998888765 45677778888887 7889999999988877322 233333
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++..+. .+.+.|.+..++..+..|.
T Consensus 445 ~l~~~~~--~~~~~a~~~a~~~~~~~~~ 470 (490)
T 2xm6_A 445 TEKKLTA--KQLQQAELLSQQYIEKYAP 470 (490)
T ss_dssp HHTTSCH--HHHHHHHHHHHHHHHHHCH
T ss_pred HHHhcCH--hHHHHHHHHHHHHHHHHHH
Confidence 4443332 3445555555555555443
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=6e-19 Score=174.86 Aligned_cols=267 Identities=12% Similarity=0.003 Sum_probs=214.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+..+...+...|++++|...|+.+.+..+. +..++..+..++...|++++|+..|+++.+.... +..++..+...
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 141 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVS 141 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 344566667778888888888888888876543 6677888888888888888888888888776432 67778888888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNI---------------LISKFSEVGEIEGALRLFHNMLEKGVAP-DATTY 508 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~ 508 (652)
+...|++++|.+.++++.+.. +.+...+.. .+..+...|++++|...|+++.+..... +..++
T Consensus 142 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~ 220 (368)
T 1fch_A 142 FTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ 220 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence 888888888888888888764 222222221 2333448899999999999999753321 47889
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.++.+.|
T Consensus 221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCC
Confidence 99999999999999999999999887765 678899999999999999999999999877 7777888999999999999
Q ss_pred cHHHHHHHHHHHHhcCCCC----------cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 588 EVEMAIEHIKWIQESSPTM----------LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
++++|+..++++.+..|.. ....+..++.+|...|++++|..++++..
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 9999999999999887765 25667779999999999999998887433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.83 E-value=8.4e-15 Score=157.34 Aligned_cols=524 Identities=9% Similarity=0.062 Sum_probs=347.7
Q ss_pred cCCCCCCCHHHHHHhhhhhhc-cChhHHHHHHHHhhcCCC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccC
Q 006281 41 LGLRDSLSPSLVARVINPYLL-THHSLALGFFNWASQQPN-FTHSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLD 118 (652)
Q Consensus 41 ~~~~~~~~~~~~~~~l~~~~~-~~~~~a~~~f~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 118 (652)
+.+.....|+.+.-.++.+.. +.+..|+.+++.+...+. |.-+....+.++....+. +..+..+..++.....
T Consensus 977 ~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---- 1051 (1630)
T 1xi4_A 977 TALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---- 1051 (1630)
T ss_pred hhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc----
Confidence 334456888888887777765 568999999999875433 444566677777776666 6677777777655321
Q ss_pred HHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHH
Q 006281 119 SSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWK 198 (652)
Q Consensus 119 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 198 (652)
...+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..+
T Consensus 1052 ---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKA 1114 (1630)
T 1xi4_A 1052 ---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKA 1114 (1630)
T ss_pred ---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHH
Confidence 3447778888999999999999862 12223333333 6788999999988652 46788899999
Q ss_pred HHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 199 FCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVF 278 (652)
Q Consensus 199 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~ 278 (652)
+...|++++|+..|.+. .+...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++
T Consensus 1115 ql~~G~~kEAIdsYiKA--------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1115 QLQKGMVKEAIDSYIKA--------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHhCCCHHHHHHHHHhc--------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHH
Confidence 99999999999999553 346677779999999999999999999877654 33333335888999999988
Q ss_pred HHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh-cCChhHHHHHHHHHH
Q 006281 279 EREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVS-SIDPRSAIVFFNFMI 357 (652)
Q Consensus 279 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~ 357 (652)
+...... .++...+..+...|...|++++|..+|..+ ..|..+...+. .|++++|.+.++..
T Consensus 1185 ele~fI~-------~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA- 1247 (1630)
T 1xi4_A 1185 ELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA- 1247 (1630)
T ss_pred HHHHHHh-------CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh-
Confidence 6554431 345667777888999999999999999885 35666666655 48899999999876
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006281 358 EKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSF 437 (652)
Q Consensus 358 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 437 (652)
.+..+|..+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +-+...
T Consensus 1248 -----~n~~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gm 1316 (1630)
T 1xi4_A 1248 -----NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGM 1316 (1630)
T ss_pred -----CCHHHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHH
Confidence 366888888889999999999988766432 256677899999999999999999998887554 234456
Q ss_pred HHHHHHHHHhc--CChhhHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhcCCHHHHHHHH-------------HHH
Q 006281 438 YNSLMEACCRE--DLLRPAKKLWDQMFASGCSG------NLKTYNILISKFSEVGEIEGALRLF-------------HNM 496 (652)
Q Consensus 438 ~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~m 496 (652)
|+-+...+++. ++..++.+.|..-. ++++ +...|..++..|.+.|+++.|.... .+.
T Consensus 1317 ftELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~ 1394 (1630)
T 1xi4_A 1317 FTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDI 1394 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHH
Confidence 66666666543 34445555554322 2233 5677999999999999999988322 222
Q ss_pred HHCCCCCCHhhHHHHHHHHHcCC---------------CHHHHHHHHHHhhhC----------CCCccHHHHHHHHHHHH
Q 006281 497 LEKGVAPDATTYTSLLEGLCQET---------------NLQAAFEVFNKSVNH----------DVMLARSILSTFMISLC 551 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~~~~~g---------------~~~~a~~~~~~~~~~----------~~~~~~~~~~~l~~~~~ 551 (652)
+. -..|...|...+.-|...+ +.+++.++|.+.-.. ...-+..+-.++...|.
T Consensus 1395 i~--kv~n~elyykai~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~~~~l~lik~yl~~vq~~n~~~Vneal~el~i 1472 (1630)
T 1xi4_A 1395 IT--KVANVELYYRAIQFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFI 1472 (1630)
T ss_pred hc--ccccHHHHHHHHHHHHhhChHHHHHHHHHhhhcCChHHHHHHHHHcCChHHhHHHHHHHHHhcchhhhHHHHHHhc
Confidence 21 1335666666666666555 666666666531000 01112233344445555
Q ss_pred hcCCHHHHHHHHHHhhh----------CCCCchhHHH-HHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 552 RRGHFLVATKLLRGLSS----------DLGHSDSHVI-LLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~----------~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
...+++.-++.++.-.. +....--+.. -+..|.++|+|++|++++++..- +...+.....
T Consensus 1473 eeed~~~Lr~si~~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~l---------~~dAm~~a~~ 1543 (1630)
T 1xi4_A 1473 TEEDYQALRTSIDAYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDSL---------YKDAMQYASE 1543 (1630)
T ss_pred CccchHHHHHHHhhccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhccC---------HHHHHHHHHH
Confidence 55554433222221111 0000111122 33444556888888888765321 2224455556
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|+.+.+.+++.-+.+.
T Consensus 1544 S~d~e~~e~ll~~F~~~ 1560 (1630)
T 1xi4_A 1544 SKDTELAEELLQWFLQE 1560 (1630)
T ss_pred cCCHHHHHHHHHHHHhc
Confidence 66666666666555444
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.4e-18 Score=171.88 Aligned_cols=265 Identities=12% Similarity=-0.004 Sum_probs=216.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
...+..+...+.+.|++++|...|+.+.+..+. +..+|..+..+|...|++++|+..|+++.+.... +..++..+..+
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 142 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVS 142 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence 445677777888999999999999998876544 7788999999999999999999999999887432 57889999999
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNL----------KTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLE 513 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~ 513 (652)
+...|++++|.+.++++.+.. +.+. ..+..+...|...|++++|...|+++.+.... ++..++..+..
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 999999999999999998753 2222 23344578899999999999999999976432 25788999999
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
.+...|++++|.+.|+++++..+. +..++..++.+|...|++++|++.++++.. .|..+..+..++.+|...|++++|
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A 300 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA 300 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence 999999999999999999988765 788999999999999999999999999877 777788999999999999999999
Q ss_pred HHHHHHHHhcCCCC-----------cHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 593 IEHIKWIQESSPTM-----------LQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 593 ~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
++.++++.+..|.. ...++..+..++...|+.+.+....++
T Consensus 301 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 301 VSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999877653 235677799999999999988877664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.80 E-value=6.7e-18 Score=167.28 Aligned_cols=232 Identities=10% Similarity=0.021 Sum_probs=180.8
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS--- 440 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--- 440 (652)
+...+..+...+...|++++|...|+.+.+.... +..++..+..+|...|++++|+..++++...... +...+..
T Consensus 97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 174 (368)
T 1fch_A 97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEE 174 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC----
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHH
Confidence 4556666777777778888888888877766543 6677778888888888888888888887776422 1122211
Q ss_pred ------------HHHHHHhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh
Q 006281 441 ------------LMEACCREDLLRPAKKLWDQMFASGCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDAT 506 (652)
Q Consensus 441 ------------ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~ 506 (652)
.+..+...|++++|...++++.+.. +. +..++..+...|...|++++|...|+++.+... .+..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~ 252 (368)
T 1fch_A 175 GAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYL 252 (368)
T ss_dssp -----------CTTHHHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHH
Confidence 2333448899999999999998874 33 578899999999999999999999999987632 2577
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC-----------ch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH-----------SD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-----------~~ 574 (652)
++..+...+...|++++|...|+++++..+. +...+..++.++.+.|++++|.+.++++.. .|.. ..
T Consensus 253 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 331 (368)
T 1fch_A 253 LWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSEN 331 (368)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhH
Confidence 8899999999999999999999999887765 677889999999999999999999998865 3333 57
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
.|..++.++...|++++|..++++..
T Consensus 332 ~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 332 IWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp HHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred HHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 78899999999999999988876543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.80 E-value=1.4e-17 Score=161.99 Aligned_cols=263 Identities=11% Similarity=0.001 Sum_probs=209.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR 447 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~ 447 (652)
+......+...|++++|..+|+.+.+.... +...+..+..++...|++++|...++++.+... .+..++..+...+..
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 101 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHH
Confidence 445556677778888888888877765443 666777778888888888888888888777642 256777778888888
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNIL--------------IS-KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
.|++++|.+.++++.+.. +.+...+..+ .. .+...|++++|...++++.+.... +...+..+.
T Consensus 102 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la 179 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLG 179 (327)
T ss_dssp TTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHH
Confidence 888888888888887753 2333333333 22 377889999999999999876433 678899999
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
..+...|++++|.+.+++++...+. +...+..++.++...|++++|.+.++++.. .|..+..+..++.++...|++++
T Consensus 180 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~ 258 (327)
T 3cv0_A 180 VLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDL 258 (327)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999999887765 678899999999999999999999999877 67778889999999999999999
Q ss_pred HHHHHHHHHhcCCCC-----------cHHHHHHHHHHhhcCCCCchHHHHHHHHH
Q 006281 592 AIEHIKWIQESSPTM-----------LQEISAELFASLSSSSYPEPILLLLHALQ 635 (652)
Q Consensus 592 A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 635 (652)
|++.++++.+..|.. ....+..++.++...|++++|.+++++..
T Consensus 259 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 259 AAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 999999999988873 35666679999999999999999887543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.7e-17 Score=157.04 Aligned_cols=253 Identities=12% Similarity=0.124 Sum_probs=197.7
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHH
Q 006281 340 SVSSIDPRSAIVFFNFMIEKGRVPT--LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLR 417 (652)
Q Consensus 340 ~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 417 (652)
.+..|++..|+..++.... ..|+ ......+.++|...|+++.|...++. .-.|+..++..+...+...|+.+
T Consensus 9 ~~~~g~y~~ai~~~~~~~~--~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRVKP--SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHTTCHHHHHHHHHHSCC--CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHhccc--CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 3445666666666554322 2222 23445567889999999999876654 23457778888889999999999
Q ss_pred HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
+|++.++++...+..| +...+..+...+...|++++|++.+++ +.+...+..++..|.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876555 455666677889999999999999987 567888999999999999999999999999
Q ss_pred HHCCCCCCHhhH---HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC
Q 006281 497 LEKGVAPDATTY---TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH 572 (652)
Q Consensus 497 ~~~~~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 572 (652)
.+.. |+.... ..++..+...|++++|..+|+++++..+. +..++..++.++.+.|++++|++.++++.. +|.+
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSP-TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 8763 443211 22334445668999999999999988664 788899999999999999999999999877 7888
Q ss_pred chhHHHHHHHHhccccHHH-HHHHHHHHHhcCCCCc
Q 006281 573 SDSHVILLKSLADAREVEM-AIEHIKWIQESSPTML 607 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~ 607 (652)
+..+..++..+...|+.++ +.++++++.+.+|+++
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~ 269 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHP 269 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCh
Confidence 8899999999999998865 5789999999999884
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.6e-15 Score=152.22 Aligned_cols=423 Identities=10% Similarity=0.083 Sum_probs=235.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
+...|..++.. .+.|+++.|..+|+++.+.. |.+...|..++..+.+.|++++|.++|++..... |++..|...+.
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~ 87 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLS 87 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 66778777774 67788888888888888764 5677788888888888888888888888887763 56667776665
Q ss_pred HH-HhcCChhhHHH----HHHHHHhC-CCccC-cccHHHHHHHHHh---------cCcHHHHHHHHHHHHhccCCCCCch
Q 006281 163 VL-ASDGYIDNALK----MFDEMSHR-GVEFS-TIGFGVFIWKFCE---------NAKLGQVLSMLDEVRKRENSMINGS 226 (652)
Q Consensus 163 ~~-~~~~~~~~a~~----~~~~m~~~-~~~~~-~~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~ 226 (652)
.. ...|+.+.|.+ +|+..... |..|+ ...|...+..... .|+++.|..+|++.... . .....
T Consensus 88 ~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~-P-~~~~~ 165 (530)
T 2ooe_A 88 YVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN-P-MINIE 165 (530)
T ss_dssp HHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS-C-CTTHH
T ss_pred HHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc-h-hhhHH
Confidence 33 34566666655 66655432 43333 3455555544333 56777777777777653 1 11111
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH------HhcC---CCCCh-
Q 006281 227 VIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK------RKLG---VAPRT- 296 (652)
Q Consensus 227 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~------~~~~---~~p~~- 296 (652)
..|..........|. ..+. .++. ...++++.|..++..+ .+.. +.|+.
T Consensus 166 ~~~~~~~~~e~~~~~-~~~~-------------------~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~ 223 (530)
T 2ooe_A 166 QLWRDYNKYEEGINI-HLAK-------------------KMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNT 223 (530)
T ss_dssp HHHHHHHHHHHHHCH-HHHH-------------------HHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--
T ss_pred HHHHHHHHHHHhhch-hHHH-------------------HHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCC
Confidence 222211110000000 0000 1110 1223455555555442 1111 23321
Q ss_pred -------hhHHHHHHHHHcc----CCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 006281 297 -------NDYREFILGLIVE----RRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTL 365 (652)
Q Consensus 297 -------~~~~~ll~~~~~~----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 365 (652)
..|...+...... ++... ....+..+|++.+... +.+.
T Consensus 224 ~~~~~~~~~w~~~~~~e~~~~~~~~~~~~------------------------------~~~~a~~~y~~al~~~-p~~~ 272 (530)
T 2ooe_A 224 PQEAQQVDMWKKYIQWEKSNPLRTEDQTL------------------------------ITKRVMFAYEQCLLVL-GHHP 272 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSSCCSCSHH------------------------------HHHHHHHHHHHHHHHH-TTCH
T ss_pred hhHHHHHHHHHHHHHHHHcCCccCCcchh------------------------------HHHHHHHHHHHHHHhC-CCCH
Confidence 1222222111110 11100 0013334444444431 2245
Q ss_pred HHHHHHHHHHHh-------cCChH-------HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006281 366 STLSNLSKNLCK-------RNKSD-------ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL 431 (652)
Q Consensus 366 ~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~ 431 (652)
..|..+...+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++|..+|+++.+.
T Consensus 273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~-- 350 (530)
T 2ooe_A 273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI-- 350 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--
T ss_pred HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--
Confidence 566666655554 57766 77778877775212225667777777777888888888888887775
Q ss_pred CCC--HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHhhH
Q 006281 432 DPD--VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK-FSEVGEIEGALRLFHNMLEKGVAPDATTY 508 (652)
Q Consensus 432 ~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 508 (652)
.|+ ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|..+|+..++... -+...|
T Consensus 351 ~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~ 428 (530)
T 2ooe_A 351 EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYV 428 (530)
T ss_dssp SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHH
T ss_pred cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHH
Confidence 333 2467777777777777777777777777642 2222222222111 2346667777777776665421 145666
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCC-c--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVM-L--ARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..++..+.+.|+.++|..+|++++...+. | ...+|...+......|+.+.+.++..++.+
T Consensus 429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 66666666667777777777766665422 1 233566666666666666666666666544
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-17 Score=154.20 Aligned_cols=255 Identities=10% Similarity=-0.000 Sum_probs=207.5
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~ 452 (652)
+-....|++..|+..++.+....+.+.......+.++|...|+++.|+..++.. ..|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 345567999999999887655432222335566789999999999999877552 3567788888999999999999
Q ss_pred hHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 453 PAKKLWDQMFASGCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
+|.+.++++...+..| +...+..+..+|...|++++|++.+++ ..+...+..++..+.+.|++++|.+.|+++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999998876434 566777888999999999999999997 357889999999999999999999999999
Q ss_pred hhCCCCccH-HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 532 VNHDVMLAR-SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 532 ~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
++.++.... .....++..+...|++++|..+++++.. .|.++..+..++.++.+.|++++|++.++++.+.+|++...
T Consensus 157 ~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 157 QDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 987644211 1122344555566999999999999987 77788889999999999999999999999999999998666
Q ss_pred HHHHHHHHhhcCCCCch-HHHHHHHHHHcc
Q 006281 610 ISAELFASLSSSSYPEP-ILLLLHALQEKC 638 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~-a~~~~~~~~~~g 638 (652)
.++ ++..+...|+.++ +.++++++.+..
T Consensus 237 l~~-l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 237 LIN-LVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHH-HHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHH-HHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 555 9999999999976 578888887653
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=4.7e-16 Score=159.67 Aligned_cols=381 Identities=10% Similarity=-0.071 Sum_probs=175.0
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHhhC-----C--CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C-
Q 006281 226 SVIAVLIIHGFCKGKRVEEAFKVLDELRIR-----E--CKP-DFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-----G- 291 (652)
Q Consensus 226 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~--~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~- 291 (652)
...||.|...+...|++++|++.|++..+. + ..| ...+|+.+..+|...|++++|...+++..+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445666666666666666666666554321 0 112 3456666667777777777776666655431 0
Q ss_pred CCC-ChhhHHHHHHHHHc--cCCHHHHHHHHHHHHcCCCCCCHHHHHHH-HHHH---hcCChhHHHHHHHHHHHcCCCCC
Q 006281 292 VAP-RTNDYREFILGLIV--ERRICEAKELGEVIVSGKFTIDDDVLNAL-IGSV---SSIDPRSAIVFFNFMIEKGRVPT 364 (652)
Q Consensus 292 ~~p-~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~---~~~~~~~a~~~~~~m~~~~~~~~ 364 (652)
..+ ...++.....++.. .+++++|...|+...+..+. ++..+..+ ...+ ..++.++|++.+++..+.... +
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~ 208 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-N 208 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-C
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-c
Confidence 011 12233333333332 34566666666666654322 22222211 1111 124556666666665554322 3
Q ss_pred HHHHHHHHHHHH----hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 365 LSTLSNLSKNLC----KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (652)
Q Consensus 365 ~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 440 (652)
...+..+...+. ..++.++|.+.+++.....+. +..++..+...|...|++++|+..+++..+.... +..++..
T Consensus 209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~ 286 (472)
T 4g1t_A 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQ 286 (472)
T ss_dssp HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHH
Confidence 344444333333 235566777777776665433 5566777777777777777777777777665322 3445554
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
+..+|...+... .... . ..........+.+++|...++...+.... +..++..+...+...|+
T Consensus 287 lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 287 IGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhcc
Confidence 444432211000 0000 0 00000001112245555666655543221 33455555666666666
Q ss_pred HHHHHHHHHHhhhCCCCccHH--HHHHHHHH-HHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARS--ILSTFMIS-LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
+++|.+.|+++++..+.+... ++..+... +...|++++|++.+++...-.+.... ..+....+.++++
T Consensus 350 ~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~---------~~~~~~~l~~~~~ 420 (472)
T 4g1t_A 350 YEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSRE---------KEKMKDKLQKIAK 420 (472)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHH---------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHH---------HHHHHHHHHHHHH
Confidence 666666666665554432221 12222222 23455666666666665552221111 1122233444555
Q ss_pred HHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 598 WIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+..+.+|.... .+..++.+|...|++++|++.+++..+.
T Consensus 421 ~~l~~~p~~~~-~~~~LG~~~~~~g~~~~A~~~y~kALe~ 459 (472)
T 4g1t_A 421 MRLSKNGADSE-ALHVLAFLQELNEKMQQADEDSERGLES 459 (472)
T ss_dssp HHHHHCC-CTT-HHHHHHHHHHHHHHCC------------
T ss_pred HHHHhCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 55555665533 3333666666666666666666665554
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=6.4e-18 Score=167.15 Aligned_cols=235 Identities=12% Similarity=0.051 Sum_probs=200.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+.+.|++++|+..|+++.+.... +..++..+..++...|++++|.+.|+++.+.. +.+..+|..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4556888999999999999999999999987543 78899999999999999999999999999875 567899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCC-----------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPD-----------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTF 546 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 546 (652)
+|...|++++|...|+++.+.. |+ ...+..+...+...|++++|.++|++++..++. ++..++..+
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 9999999999999999998752 22 122334578899999999999999999987754 267889999
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCc
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (652)
+.++...|++++|++.++++.. .|.++..+..++.++...|++++|++.++++.+..|... ..+..++.+|...|+++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFI-RSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHTCCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHHCCCHH
Confidence 9999999999999999999877 777888999999999999999999999999999999884 45555999999999999
Q ss_pred hHHHHHHHHHHcc
Q 006281 626 PILLLLHALQEKC 638 (652)
Q Consensus 626 ~a~~~~~~~~~~g 638 (652)
+|.+.++++.+..
T Consensus 299 ~A~~~~~~al~~~ 311 (365)
T 4eqf_A 299 EAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-16 Score=151.95 Aligned_cols=282 Identities=9% Similarity=0.117 Sum_probs=101.5
Q ss_pred cCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHH
Q 006281 131 QGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLS 210 (652)
Q Consensus 131 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 210 (652)
+.|++++|.++++++. ++.+|..|..++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4455666666666662 2346666666777777777776666442 355566666666666677777777
Q ss_pred HHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 006281 211 MLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL 290 (652)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 290 (652)
.++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~----~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--- 148 (449)
T 1b89_A 83 YLQMARKK----ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---
T ss_pred HHHHHHHh----CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---
Confidence 66555543 1224555666677777777777666653 255567777777777777777777777654
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 291 GVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSN 370 (652)
Q Consensus 291 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 370 (652)
..|..+..++.+.|++++|.+.+..+ .++.+|..
T Consensus 149 ------~n~~~LA~~L~~Lg~yq~AVea~~KA----------------------------------------~~~~~Wk~ 182 (449)
T 1b89_A 149 ------SNFGRLASTLVHLGEYQAAVDGARKA----------------------------------------NSTRTWKE 182 (449)
T ss_dssp ------TCHHHHHHHHHTTTCHHHHHHHHHHH----------------------------------------TCHHHHHH
T ss_pred ------hhHHHHHHHHHHhccHHHHHHHHHHc----------------------------------------CCchhHHH
Confidence 35666666777777666666655443 14566666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL 450 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~ 450 (652)
++.+|...|+++.|......+. ..+.-...++..|.+.|++++|+.+++...... +-....|+-+..+|++- +
T Consensus 183 v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~ 255 (449)
T 1b89_A 183 VCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-K 255 (449)
T ss_dssp HHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-C
Confidence 6667777777777744433321 233334456777777777777777777766554 33555666665555543 2
Q ss_pred hhhHHHHHHHHHHc-CCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 006281 451 LRPAKKLWDQMFAS-GCSG------NLKTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 451 ~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~A~~ 491 (652)
++...+.++..... +++| +...|..+.-.|...++++.|..
T Consensus 256 p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~ 303 (449)
T 1b89_A 256 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 303 (449)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 33333333222221 2233 35567777778888888887765
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=153.83 Aligned_cols=258 Identities=10% Similarity=0.047 Sum_probs=205.4
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLRE 418 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 418 (652)
..+..|++++|..+|+++.+... .+...+..+...+...|++++|...++++.+.... +..++..+...+...|++++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~ 107 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNANA 107 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCCHHH
Confidence 33445566666666666655432 35677777888889999999999999998876543 67788889999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 419 AYGVIQEMKRKGLDPDVSFYNSL--------------ME-ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (652)
Q Consensus 419 a~~~~~~~~~~~~~p~~~~~~~l--------------l~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (652)
|...++++.+.... +...+..+ .. .+...|++++|.+.++++.+.. +.+...+..+...|...
T Consensus 108 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 185 (327)
T 3cv0_A 108 ALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLS 185 (327)
T ss_dssp HHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHh
Confidence 99999998876422 22223222 22 3677889999999999999875 56788999999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLL 563 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 563 (652)
|++++|.+.++++.+... .+..++..+...+...|++++|.+.|+++++..+. +...+..++.++...|++++|.+.+
T Consensus 186 ~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~ 263 (327)
T 3cv0_A 186 NNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYNMAVSYSNMSQYDLAAKQL 263 (327)
T ss_dssp TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhccHHHHHHHH
Confidence 999999999999987643 36788999999999999999999999999887765 6778999999999999999999999
Q ss_pred HHhhh-CCC------------CchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 564 RGLSS-DLG------------HSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 564 ~~~~~-~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
+++.. .|. .+..+..++.++...|++++|...++++.+.
T Consensus 264 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 315 (327)
T 3cv0_A 264 VRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP 315 (327)
T ss_dssp HHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred HHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 98876 444 4667889999999999999999998765543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.9e-15 Score=152.75 Aligned_cols=329 Identities=11% Similarity=-0.042 Sum_probs=173.9
Q ss_pred CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc-----C--CCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCC---
Q 006281 258 KPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKL-----G--VAP-RTNDYREFILGLIVERRICEAKELGEVIVSGK--- 326 (652)
Q Consensus 258 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--- 326 (652)
......|+.+...+...|+.++|++.|++..+. + ..| ...+|..+..+|...|++++|...++.+....
T Consensus 48 ~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~ 127 (472)
T 4g1t_A 48 EFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKF 127 (472)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHS
T ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhc
Confidence 334568999999999999999999999886542 1 122 34577888888999999999988887665320
Q ss_pred ---CCC-CHHHHHHHHH---HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhcCChHHHHHHHHHHHhCCC
Q 006281 327 ---FTI-DDDVLNALIG---SVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKN---LCKRNKSDELVEVYKVLSANDY 396 (652)
Q Consensus 327 ---~~~-~~~~~~~l~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~ 396 (652)
..+ ...++...-. .+..+++++|+..|++..+.... +...+..+... +...++.++|++.+++..+..+
T Consensus 128 ~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p 206 (472)
T 4g1t_A 128 SSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP 206 (472)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred ccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence 001 1112211111 11223445555555544443211 12222222211 2223444444444444443322
Q ss_pred CcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006281 397 FTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKT 472 (652)
Q Consensus 397 ~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 472 (652)
. +...+..+...+.. .|++++|...+++....... +..++..+...+...|++++|...+++..+.. +.+..+
T Consensus 207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~ 283 (472)
T 4g1t_A 207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYL 283 (472)
T ss_dssp S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHH
T ss_pred c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHH
Confidence 2 23333333322222 23344444444444443211 33344444444444444555544444444432 223333
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR 552 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 552 (652)
+..+..+|...+... ..... ..........+.++.|...|+++.+.++. +...+..+...+..
T Consensus 284 ~~~lg~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~ 346 (472)
T 4g1t_A 284 HCQIGCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHAL 346 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHH
Confidence 333333332111000 00000 00000001123467899999998887765 55678889999999
Q ss_pred cCCHHHHHHHHHHhhhCCCCch----hHHHHHHH-HhccccHHHHHHHHHHHHhcCCCCc
Q 006281 553 RGHFLVATKLLRGLSSDLGHSD----SHVILLKS-LADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 553 ~g~~~~A~~~~~~~~~~~~~~~----~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.|++++|++.++++....+.+. .+..++.. ....|++++|++.++++.+..|...
T Consensus 347 ~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~ 406 (472)
T 4g1t_A 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSR 406 (472)
T ss_dssp TTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCH
T ss_pred hccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccH
Confidence 9999999999999877333322 23344433 3578999999999999999999874
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-18 Score=176.46 Aligned_cols=118 Identities=14% Similarity=0.113 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKR---KGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~---~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
..+|+++|++|++.|++++|.++|++|.+ .|+.||.+|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 44788888888888888888888877653 467788888888888888888888888888888888888888888888
Q ss_pred HHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006281 477 ISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ 517 (652)
Q Consensus 477 ~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 517 (652)
|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR 248 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence 888888776 46777888888888888888888877765544
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.8e-17 Score=156.56 Aligned_cols=349 Identities=12% Similarity=0.123 Sum_probs=134.4
Q ss_pred cCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 202 NAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFERE 281 (652)
Q Consensus 202 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 281 (652)
.|++++|.++++++.. +.+|..++.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+
T Consensus 16 ~~~ld~A~~fae~~~~--------~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 16 IGNLDRAYEFAERCNE--------PAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCCC--------hHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 4555666666655521 135556666666666666666666432 35556666666666666666666
Q ss_pred HHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 006281 282 VVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGR 361 (652)
Q Consensus 282 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~ 361 (652)
..++..++. .++..+.+.++.+|.+.|++.++.++++
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~----------------------------------------- 118 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN----------------------------------------- 118 (449)
T ss_dssp -----------------------------CHHHHTTTTT-----------------------------------------
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-----------------------------------------
Confidence 655555442 2334455556666666666655544331
Q ss_pred CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 362 VPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 362 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
.|+..+|..+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..+
T Consensus 119 ~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v 183 (449)
T 1b89_A 119 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEV 183 (449)
T ss_dssp CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHH
Confidence 234456666667777777777777777755 25777777777777777777777776 156777777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc--CC
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ--ET 519 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~--~g 519 (652)
+.+|...|+++.|......+. .++.-...++..|.+.|++++|..+++...... .-....|+-+.-+|++ .+
T Consensus 184 ~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~ 257 (449)
T 1b89_A 184 CFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 257 (449)
T ss_dssp HHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHH
Confidence 777777777777755444322 223334457777777777887777777776433 2244555555555554 34
Q ss_pred CHHHHHHHHHHhhhCCCCc------cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------------CCCCchhHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVML------ARSILSTFMISLCRRGHFLVATKLLRGLSS-------------DLGHSDSHVILL 580 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------~~~~~~~~~~l~ 580 (652)
+..+.++.|.. +.+++| +...|..++..|...++++.|....-+-+. .+.+.+.+...+
T Consensus 258 k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai 335 (449)
T 1b89_A 258 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 335 (449)
T ss_dssp HHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHH
T ss_pred HHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHH
Confidence 45555555542 222222 234577777778888888877654332211 233444444444
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.-|. +....++.-+.......-++ ...+..+.+.|++.-+..+++.+...
T Consensus 336 ~fyl--~~~p~~l~~ll~~l~~~ld~-----~r~v~~~~~~~~l~l~~~yl~~v~~~ 385 (449)
T 1b89_A 336 QFYL--EFKPLLLNDLLMVLSPRLDH-----TRAVNYFSKVKQLPLVKPYLRSVQNH 385 (449)
T ss_dssp HHHH--HHCGGGHHHHHHHHGGGCCH-----HHHHHHHHHTTCTTTTHHHHHHHHTT
T ss_pred HHHH--hcCHHHHHHHHHHHHhccCc-----HHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 4444 22223333333333222222 12344455666666666666655544
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.8e-17 Score=172.16 Aligned_cols=163 Identities=17% Similarity=0.184 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSA---NDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNS 440 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ 440 (652)
-..||+++|++||+.|++++|.++|+.|.+ .|+.||..+||+||.+|++.|++++|.++|++|.+.|+.||.+|||+
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 467899999999999999999999988764 47899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhhHHHHHH
Q 006281 441 LMEACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD------ATTYTSLLE 513 (652)
Q Consensus 441 ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~------~~~~~~l~~ 513 (652)
+|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.++.+. .+++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 99999999985 78999999999999999999999998766553 455555555 3355554 445555666
Q ss_pred HHHcCC---------CHHHHHHHHHHh
Q 006281 514 GLCQET---------NLQAAFEVFNKS 531 (652)
Q Consensus 514 ~~~~~g---------~~~~a~~~~~~~ 531 (652)
.|.+.+ ..++-...|++-
T Consensus 281 l~s~d~~~s~pk~~~~~~~L~~~~~~Q 307 (1134)
T 3spa_A 281 VYAKDGRVSYPKLHLPLKTLQCLFEKQ 307 (1134)
T ss_dssp HHCCCSCCCCCCCSSCHHHHHHHHHHH
T ss_pred HHccCCCCcCccccCCHHHHHHHHHHH
Confidence 666554 245666666643
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.6e-16 Score=140.03 Aligned_cols=194 Identities=12% Similarity=0.020 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006281 436 SFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGL 515 (652)
Q Consensus 436 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~ 515 (652)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++.++.... +...+..+...+
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~ 83 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSEAY 83 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHH
Confidence 344444444555555555555555554443 334445555555555555555555555555543221 344444455555
Q ss_pred HcC-----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 516 CQE-----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 516 ~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
... |++++|...|+++++.++. +...+..+..++...|++++|++.++++.+ + .++..+..++.++
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~ 161 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELY 161 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHH
T ss_pred HHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHH
Confidence 555 7778888888877777665 666777777788888888888888877766 4 5666777788888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
...|++++|+..++++.+.+|+.....+ .++.++...|++++|.+.+++.
T Consensus 162 ~~~g~~~~A~~~~~~al~~~P~~~~~~~-~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 162 LSMGRLDEALAQYAKALEQAPKDLDLRV-RYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHTCHHHHHHHHHHHHHHSTTCHHHHH-HHHHHHTC--------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHccCHHHHHHHHHHH
Confidence 8888888888888888888877754433 4777788888888887777653
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-15 Score=142.02 Aligned_cols=224 Identities=11% Similarity=0.079 Sum_probs=105.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CC----HHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD--PD----VSFYNS 440 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 440 (652)
.+..+...+...|++++|...|+...+.. .+...+..+..++...|++++|+..+++..+.... |+ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 34444445555555555555555555444 34445555555555555555555555554443110 01 244444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN 520 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 520 (652)
+...+...|++++|.+.|+++.+. .|+. ..+...|++++|...++++...... +...+..+...+...|+
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcC
Confidence 455555555555555555555443 2332 2233344445555555554443111 23344444444445555
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+++|...|++++...+. +..++..++.++...|++++|++.++++.. .|..+..+..++.++...|++++|++.++++
T Consensus 155 ~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 55555555554444433 344444445555555555555555554443 3334444444555555555555555555554
Q ss_pred HhcC
Q 006281 600 QESS 603 (652)
Q Consensus 600 ~~~~ 603 (652)
.+..
T Consensus 234 ~~~~ 237 (258)
T 3uq3_A 234 RTKD 237 (258)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 4444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.7e-15 Score=140.08 Aligned_cols=226 Identities=11% Similarity=0.071 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCC----HHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGN----LKTY 473 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~ 473 (652)
...+..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|.+.+++..+.. ..++ ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 4578888899999999999999999998887 678889999999999999999999999988752 1112 5788
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (652)
..+..+|...|++++|...|+++.+. .|+. ..+...|++++|.+.+++++...+. +...+..++..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence 89999999999999999999999875 3443 3456678899999999998887765 677888899999999
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHH
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 632 (652)
|++++|++.++++.. .|.++..+..++.++...|++++|+..++++.+.+|.... .+..++.++...|++++|.+.++
T Consensus 153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~ 231 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVR-AYIRKATAQIAVKEYASALETLD 231 (258)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999877 6777888889999999999999999999999999988754 44459999999999999999999
Q ss_pred HHHHcc
Q 006281 633 ALQEKC 638 (652)
Q Consensus 633 ~~~~~g 638 (652)
++.+..
T Consensus 232 ~a~~~~ 237 (258)
T 3uq3_A 232 AARTKD 237 (258)
T ss_dssp HHHHHH
T ss_pred HHHHhC
Confidence 887764
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-15 Score=135.96 Aligned_cols=199 Identities=15% Similarity=0.038 Sum_probs=147.4
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++...+..+...+.+.|++++|+..|++..+.... +...+..+..++.+.|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35566777777777888888888888877766432 56677777777778888888888888777764 55667777777
Q ss_pred HHHHhc-----------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 478 SKFSEV-----------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 478 ~~~~~~-----------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
.+|... |++++|+..|++.++.... +...+..+...+...|++++|+..|+++++.+ .++..+..+
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l 157 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence 777777 9999999999998876433 57788888889999999999999999998887 478888899
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..++...|++++|+..++++.+ +|.++..+..++.++...|++++|++.++++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 9999999999999999998877 777888888999999999999999998887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.69 E-value=1e-14 Score=142.54 Aligned_cols=248 Identities=10% Similarity=0.062 Sum_probs=211.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR-LREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
...+..+...+.+.|++++|+..++++.+..+. +..+|+.+..++...|+ +++|+..|+++.+.... +...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence 345666777788999999999999999987655 78899999999999997 99999999999988654 7788999999
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-CCCHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-ETNLQ 522 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~ 522 (652)
++...|++++|+..|+++++.. +.+...|..+..++...|++++|+..|+++++.... +...|+.+..++.. .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 9999999999999999999986 678899999999999999999999999999987554 78899999999998 66657
Q ss_pred HH-----HHHHHHhhhCCCCccHHHHHHHHHHHHhcC--CHHHHHHHHHHhhhCCCCchhHHHHHHHHhccc--------
Q 006281 523 AA-----FEVFNKSVNHDVMLARSILSTFMISLCRRG--HFLVATKLLRGLSSDLGHSDSHVILLKSLADAR-------- 587 (652)
Q Consensus 523 ~a-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 587 (652)
+| ++.|++++..++. +...|..+..++...| ++++|++.+.++..++.++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 5889999998877 7889999999999988 689999999998446777778889999998874
Q ss_pred c-HHHHHHHHHHH-HhcCCCCcHHHHHHHHHHh
Q 006281 588 E-VEMAIEHIKWI-QESSPTMLQEISAELFASL 618 (652)
Q Consensus 588 ~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~ 618 (652)
+ +++|+++++++ .+.+|.. ...|..++..+
T Consensus 332 ~~~~~A~~~~~~l~~~~DP~r-~~~w~~~~~~l 363 (382)
T 2h6f_A 332 DILNKALELCEILAKEKDTIR-KEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCGGG-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCchh-HHHHHHHHHHH
Confidence 3 59999999999 8899876 34454455544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-13 Score=128.70 Aligned_cols=220 Identities=10% Similarity=-0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
++..+...|...|++++|+..|++..+.+ +...+..+...+.. .+++++|.+.|++..+.+ +...+..+.
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 81 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG 81 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence 34444444444444444444444444421 22334444444444 444444444444444432 334444444
Q ss_pred HHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 478 SKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 478 ~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|+++.+.+ +...+..+...
T Consensus 82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 82 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 44444 444555555544444432 33444444444444 445555555555444433 22334444444
Q ss_pred HHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc-
Q 006281 550 LCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSS- 620 (652)
Q Consensus 550 ~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 620 (652)
|.. .+++++|++.+++..+. ..+..+..++.+|.. .+++++|++.++++.+.++ ...+..++.+|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcC
Confidence 444 44555555555444432 233444444455544 4555555555555544433 1222224444444
Q ss_pred ---CCCCchHHHHHHHHHHc
Q 006281 621 ---SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ---~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|.+.+++..+.
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~ 251 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKL 251 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHc
Confidence 45555555555544444
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.4e-14 Score=134.87 Aligned_cols=245 Identities=14% Similarity=0.033 Sum_probs=181.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 006281 367 TLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD--VSFYNSLMEA 444 (652)
Q Consensus 367 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~ll~~ 444 (652)
.+......+...|++++|...|+...+..+. +...+..+..+|...|++++|+..+++..+.+..|+ ...|..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3444556677888888888888888876543 555788888888889999999999988887432222 2347788888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAA 524 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a 524 (652)
+...|++++|.+.|++..+.. +.+...+..+...|...|++++|+..|++..+... .+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTT-TDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSC-CCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 888899999999998888764 55667888888888889999999999888876522 2566666666344445689999
Q ss_pred HHHHHHhhhCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhC----CCC-----chhHHHHHHHHhccccHHHH
Q 006281 525 FEVFNKSVNHDVMLARSILSTFMISLCRRGH---FLVATKLLRGLSSD----LGH-----SDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~----~~~-----~~~~~~l~~~~~~~g~~~~A 592 (652)
.+.|+++++..+. +...+..+..++...|+ +++|...++++.+. +.. ...+..++..|...|++++|
T Consensus 162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999888887765 56677778888888787 77788777776541 221 14566788888888999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 593 IEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++.++++.+.+|++. .....+..
T Consensus 241 ~~~~~~al~~~p~~~-~a~~~l~~ 263 (272)
T 3u4t_A 241 DAAWKNILALDPTNK-KAIDGLKM 263 (272)
T ss_dssp HHHHHHHHHHCTTCH-HHHHHHC-
T ss_pred HHHHHHHHhcCccHH-HHHHHhhh
Confidence 999999999888773 44443433
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.66 E-value=6.5e-15 Score=143.95 Aligned_cols=232 Identities=10% Similarity=0.057 Sum_probs=202.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
...|..+..++...|++++|+..++++++.... +...|+.+..++...|+ +++|+..|+++++.. +.+...|..+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~ 174 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRV 174 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
Confidence 457888889999999999999999999988543 67889999999999997 999999999999986 668899999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh-cCCHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR-RGHFL 557 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~ 557 (652)
++...|++++|+..|+++++.... +...|..+..++...|++++|++.|+++++.++. +...|..+..++.+ .|..+
T Consensus 175 ~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 175 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999987544 7889999999999999999999999999999987 88899999999999 66657
Q ss_pred HH-----HHHHHHhhh-CCCCchhHHHHHHHHhccc--cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC-------
Q 006281 558 VA-----TKLLRGLSS-DLGHSDSHVILLKSLADAR--EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS------- 622 (652)
Q Consensus 558 ~A-----~~~~~~~~~-~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------- 622 (652)
+| ++.++++.. +|.+...|..++.++...| ++++|++.++++ +.+|+. ...+..++++|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~-~~al~~La~~~~~~~~~~~~~~ 330 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSS-PYLIAFLVDIYEDMLENQCDNK 330 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCC-HHHHHHHHHHHHHHHHTTCSSH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCC-HHHHHHHHHHHHHHhcccccch
Confidence 77 478888776 8888999999999999888 699999999998 778877 455556999998874
Q ss_pred -C-CchHHHHHHHH-HHc
Q 006281 623 -Y-PEPILLLLHAL-QEK 637 (652)
Q Consensus 623 -~-~~~a~~~~~~~-~~~ 637 (652)
+ +++|.++++++ .+.
T Consensus 331 ~~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 331 EDILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 2 58999999988 443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.6e-14 Score=136.12 Aligned_cols=235 Identities=10% Similarity=0.043 Sum_probs=194.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN--LKTYNILIS 478 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~ 478 (652)
..+......+...|++++|+..|++..+.... +...+..+..++...|++++|.+.+++..+..-.++ ..+|..+..
T Consensus 4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~ 82 (272)
T 3u4t_A 4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGK 82 (272)
T ss_dssp -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHH
Confidence 35566778899999999999999999987433 455888899999999999999999999998431122 334889999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.|...|++++|+..|++..+.... +...+..+...|...|++++|.+.|+++++..+. +...+..+...+...+++++
T Consensus 83 ~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~ 160 (272)
T 3u4t_A 83 ILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVK 160 (272)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999986433 5678999999999999999999999999888665 67788888844555569999
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhcccc---HHHHHHHHHHHHhcC---CCC----cHHHHHHHHHHhhcCCCCchH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADARE---VEMAIEHIKWIQESS---PTM----LQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a 627 (652)
|++.++++.+ .|.....+..++.++...|+ +++|+..++++.+.. |+. ....+..++..|...|++++|
T Consensus 161 A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 240 (272)
T 3u4t_A 161 ADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA 240 (272)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9999999987 67777888899999998888 888999999988764 432 124566699999999999999
Q ss_pred HHHHHHHHHcc
Q 006281 628 LLLLHALQEKC 638 (652)
Q Consensus 628 ~~~~~~~~~~g 638 (652)
.+.++++.+..
T Consensus 241 ~~~~~~al~~~ 251 (272)
T 3u4t_A 241 DAAWKNILALD 251 (272)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 99999888763
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=7.8e-15 Score=135.60 Aligned_cols=208 Identities=14% Similarity=0.121 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
....|..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHH
Confidence 444666677777778888888888888776533 256777777778888888888888888887764 456777888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.|...|++++|.+.++++.+... .+...+..+...+...|++++|...++++++..+. +...+..++.++...|++++
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 177 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDE 177 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHH
Confidence 88888888888888888877543 26677888888888888888888888888877654 66778888888889999999
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
|++.++++.. .+..+..+..++.++...|++++|++.++++.+.+|+.....
T Consensus 178 A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~ 230 (243)
T 2q7f_A 178 ALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLAL 230 (243)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHH
Confidence 9999888876 566677888889999999999999999999999888875433
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.65 E-value=4.2e-14 Score=131.46 Aligned_cols=205 Identities=14% Similarity=0.049 Sum_probs=155.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 400 MESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISK 479 (652)
Q Consensus 400 ~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 479 (652)
...+..+...+...|++++|...|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 45667777777888888888888888776642 256677777778888888888888888877764 4567777778888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 480 FSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 480 ~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
|...|++++|.++++++.+.+..| +...+..+...+...|++++|.+.|+++++..+. +...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888887632344 4556777777888888888888888888776654 56677788888888888888
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
|.+.++++.. .+.....+..++..+...|++++|.+.++++.+..|+..
T Consensus 194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 8888888766 555666777788888888888888888888888887763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.64 E-value=6e-14 Score=130.41 Aligned_cols=201 Identities=9% Similarity=-0.026 Sum_probs=176.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+.... +...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence 4567888888999999999999999999875 567889999999999999999999999999976433 67888999999
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
+...|++++|.++|++++..+..| +...+..++.++...|++++|.+.++++.. .|..+..+..++.++...|++++|
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998832223 567788899999999999999999999877 667788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++.+..|... ..+..++..+...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNA-RSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCH-HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcH-HHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999998774 445558999999999999999999998763
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.2e-13 Score=125.71 Aligned_cols=206 Identities=10% Similarity=-0.017 Sum_probs=144.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+...|++++|+..|+++.+... .+...+..+...+...|++++|.+.++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 445666777777777777777777777776532 246667777777777777777777777777654 446667777777
Q ss_pred HHHhc-CCHHHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 479 KFSEV-GEIEGALRLFHNMLEKGVAPD-ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 479 ~~~~~-g~~~~A~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
.|... |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++++..+. +...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCH
Confidence 77777 777777777777776322332 456666777777777777777777777766554 566677777777777777
Q ss_pred HHHHHHHHHhhh-CC-CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 557 LVATKLLRGLSS-DL-GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++|.+.++++.. .| ..+..+..++..+...|+.++|..+++.+.+..|+..
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 216 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSE 216 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH
Confidence 777777777665 45 5556666666666777777777777777777777663
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.64 E-value=5.3e-13 Score=125.64 Aligned_cols=227 Identities=11% Similarity=0.000 Sum_probs=198.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYN 439 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~ 439 (652)
+...+..+...+...|++++|...|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 45666777778889999999999999988843 56788889999999 999999999999999875 678888
Q ss_pred HHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhhHHHH
Q 006281 440 SLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE----VGEIEGALRLFHNMLEKGVAPDATTYTSL 511 (652)
Q Consensus 440 ~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~l 511 (652)
.+...|.. .+++++|.+.|++..+.+ +...+..+...|.. .+++++|+..|++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88899999 999999999999999864 67888999999998 999999999999999875 56677888
Q ss_pred HHHHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 006281 512 LEGLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 512 ~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 583 (652)
...|.. .+++++|...|+++.+.+ +...+..+..+|.. .+++++|++.+++..+.. .+..+..++.+|
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~-~~~a~~~l~~~~ 228 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE-NGGGCFNLGAMQ 228 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-CHHHHHHHHHHH
Confidence 888887 899999999999998875 45678889999999 999999999999988743 367888999999
Q ss_pred hc----cccHHHHHHHHHHHHhcCCCC
Q 006281 584 AD----AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 584 ~~----~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.. .+++++|++.++++.+.+|..
T Consensus 229 ~~g~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 229 YNGEGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp HTTSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred HcCCCcccCHHHHHHHHHHHHHcCCHH
Confidence 98 999999999999999998765
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.64 E-value=1.3e-11 Score=128.86 Aligned_cols=102 Identities=11% Similarity=0.011 Sum_probs=55.7
Q ss_pred hHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCc---HHHHHHHH
Q 006281 136 QKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAK---LGQVLSML 212 (652)
Q Consensus 136 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~ 212 (652)
.+-+..|+..+.... -|...|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.|+ .+.+.++|
T Consensus 49 ~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lf 126 (679)
T 4e6h_A 49 SDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVL 126 (679)
T ss_dssp SCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHH
Confidence 334444444444432 36667777777777777777777777777665 23344455555555555566 66666777
Q ss_pred HHHHhccCCCCCchhhHHHHHHHHHccC
Q 006281 213 DEVRKRENSMINGSVIAVLIIHGFCKGK 240 (652)
Q Consensus 213 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g 240 (652)
++.... ...+++..+|...+....+.+
T Consensus 127 eRal~~-~~~~~sv~LW~~Yl~f~~~~~ 153 (679)
T 4e6h_A 127 ARCLSK-ELGNNDLSLWLSYITYVRKKN 153 (679)
T ss_dssp HHHTCS-SSCCCCHHHHHHHHHHHHHHS
T ss_pred HHHHHh-cCCCCCHHHHHHHHHHHHHhc
Confidence 666655 111244555655554443333
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-14 Score=140.87 Aligned_cols=378 Identities=10% Similarity=-0.008 Sum_probs=235.1
Q ss_pred HHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCH---HHHHHHHHHHhhCCCCcCHHHHHHHHHHH
Q 006281 195 FIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRV---EEAFKVLDELRIRECKPDFIAYRIVAEEF 271 (652)
Q Consensus 195 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~m~~~~~~p~~~~~~~ll~~~ 271 (652)
+...+.+.|++++|.+.|++..+. + +...+..|...|...|+. ++|.+.|++..+. +...+..+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~ 79 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-G----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLL 79 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-T----CCTGGGTCC--------------------------------CHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-C----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHH
Confidence 455666778888888888877765 3 233334455566666766 7777777776643 344444555534
Q ss_pred HhcC-----CHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCCh
Q 006281 272 KLMG-----SVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDP 346 (652)
Q Consensus 272 ~~~g-----~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 346 (652)
...+ ++++|...|++..+.|... .+..+...|...+.... .
T Consensus 80 ~~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~-------------------------------~ 125 (452)
T 3e4b_A 80 AAKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFP-------------------------------N 125 (452)
T ss_dssp HTC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCT-------------------------------T
T ss_pred HhCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCC-------------------------------C
Confidence 4433 5666777766666644322 33333333332222111 1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHH----HHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC---CHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDE----LVEVYKVLSANDYFTDMESYNVMVSFLCTSG---RLREA 419 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~a 419 (652)
.++.+.+......|. ......+...|...+.++. +..+++..... ++..+..+...|...| +.++|
T Consensus 126 ~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A 198 (452)
T 3e4b_A 126 VNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAEL 198 (452)
T ss_dssp CCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHH
Confidence 334444555444443 2334445555666664444 44444444332 4448888899999999 89999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHH
Q 006281 420 YGVIQEMKRKGLDPDVSFYNSLMEACCRE----DLLRPAKKLWDQMFASGCSGNLKTYNILISK-F--SEVGEIEGALRL 492 (652)
Q Consensus 420 ~~~~~~~~~~~~~p~~~~~~~ll~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~ 492 (652)
+..|++..+.|.. +...+..+...|... +++++|.+.|+... . -+...+..|... | ...+++++|++.
T Consensus 199 ~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 199 LKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp HHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred HHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 9999999988743 555556676777554 78999999999987 3 455666667666 4 468999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCC-----CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHH
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQET-----NLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLL 563 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~ 563 (652)
|++..+.| +...+..|...|. .| ++++|.+.|+++. . -++..+..|...|.. ..++++|.+++
T Consensus 274 ~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~ 345 (452)
T 3e4b_A 274 LDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHL 345 (452)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHH
Confidence 99999876 6677777777776 45 9999999999887 2 256677788888776 34899999999
Q ss_pred HHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 564 RGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 564 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++..+ .+++.+...|+..|.. ..+.++|...++++.+.++........ .+......++.++|..+.++..+.
T Consensus 346 ~~Aa~-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~-~l~~~~~~~~~~~a~~~~~~~~~~ 421 (452)
T 3e4b_A 346 LTAAR-NGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLAT-QLEAPLTPAQRAEGQRLVQQELAA 421 (452)
T ss_dssp HHHHT-TTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHH-HHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHh-hChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHh
Confidence 99876 4567788888888864 468999999999999987654333333 223334456778888888877765
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=132.12 Aligned_cols=201 Identities=14% Similarity=0.116 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
....|..+...+...|++++|...|+++.+.. +.+...+..+...|...|++++|...++++.+.... +...+..+..
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~ 99 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN 99 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence 45667778888999999999999999999864 667889999999999999999999999999976433 6788899999
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA 592 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 592 (652)
.+...|++++|.+.++++++..+. +...+..++..+...|++++|.+.++++.. .+..+..+..++.++...|++++|
T Consensus 100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999987765 677899999999999999999999999877 677788899999999999999999
Q ss_pred HHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 593 IEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+..++++.+..|... ..+..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHA-DAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccH-HHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999874 455559999999999999999999988753
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-13 Score=124.93 Aligned_cols=201 Identities=13% Similarity=0.019 Sum_probs=175.2
Q ss_pred CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 434 DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 434 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
+...+..+...+...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.++++.+... .+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHH
Confidence 45678888899999999999999999999875 56788999999999999999999999999997643 36788899999
Q ss_pred HHHcC-CCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHH
Q 006281 514 GLCQE-TNLQAAFEVFNKSVNHDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 514 ~~~~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
.+... |++++|...++++++....| +...+..++.++...|++++|++.++++.. .|..+..+..++.++...|+++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 164 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG 164 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 99999 99999999999998832222 467788999999999999999999999877 6777888999999999999999
Q ss_pred HHHHHHHHHHhcCC-CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSP-TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|++.++++.+..| .. ...+..+...+...|+.++|..+++.+.+.
T Consensus 165 ~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 165 DADYYFKKYQSRVEVLQ-ADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHCSCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCC-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 99999999999998 65 444555888889999999999999988765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-14 Score=135.29 Aligned_cols=243 Identities=11% Similarity=-0.065 Sum_probs=129.6
Q ss_pred CChHHHHHHHHHHHhCCCC---cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 379 NKSDELVEVYKVLSANDYF---TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
|++++|+..++.+.+.... .+..++..+...+...|++++|...|+++.+.... +..++..+...+...|++++|.
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4555555555555543211 13345555566666666666666666666555322 4555666666666666666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+.|+++.+.. +.+...+..+..+|...|++++|...|+++.+. .|+.......+..+...|++++|...+++++...
T Consensus 98 ~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 6666666543 334556666666666666666666666666653 2332233333333445566666666665555543
Q ss_pred CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC-----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 536 VMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG-----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+. +...+ .++..+...++.++|.+.++++....+ .+..+..++.++...|++++|+..++++.+.+|.....
T Consensus 175 ~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~- 251 (275)
T 1xnf_A 175 DK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE- 251 (275)
T ss_dssp CC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH-
T ss_pred Cc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH-
Confidence 32 22222 244455555666666666665544211 13445566666666666666666666666666654322
Q ss_pred HHHHHHHhhcCCCCchHHHHH
Q 006281 611 SAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~ 631 (652)
...++...|++++|++.+
T Consensus 252 ---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 252 ---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHhhHHHH
Confidence 233444555555555444
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.8e-14 Score=140.27 Aligned_cols=275 Identities=11% Similarity=0.049 Sum_probs=200.9
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKS---DELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYG 421 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 421 (652)
+.++|+..|+...+.|... .+..+...|...+.. ..+.+.+....+.| +...+..+...|...+.++++..
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~ 162 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD 162 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence 4566777777766655433 444455555554443 33555555555444 44577788888888885555444
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHH
Q 006281 422 VIQEMKRKGLDPDVSFYNSLMEACCRED---LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV----GEIEGALRLFH 494 (652)
Q Consensus 422 ~~~~~~~~~~~p~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~ 494 (652)
....+.+.-...++..+..+...|...| +.++|.+.|+...+.| +++...+..|...|... +++++|+..|+
T Consensus 163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~ 241 (452)
T 3e4b_A 163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE 241 (452)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence 4333322211223347888888899999 9999999999999988 67777767788888655 79999999999
Q ss_pred HHHHCCCCCCHhhHHHHHHH-H--HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC-----CHHHHHHHHHHh
Q 006281 495 NMLEKGVAPDATTYTSLLEG-L--CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-----HFLVATKLLRGL 566 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----~~~~A~~~~~~~ 566 (652)
+.. .| +...+..+... + ...+++++|.+.|++..+.+ ++..+..+...|. .| ++++|++++++.
T Consensus 242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 987 33 45566666666 4 46899999999999999877 5667777888887 55 999999999999
Q ss_pred hhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc----CCCCchHHHHHHHHHHcc
Q 006281 567 SSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSS----SSYPEPILLLLHALQEKC 638 (652)
Q Consensus 567 ~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g 638 (652)
. +.++.+...++..|.. ..++++|+..++++.+.+.. ...++ |+..|.. ..+.++|...+++..+.|
T Consensus 314 a--~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~--~A~~~-Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V--GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN--SADFA-IAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T--TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT--THHHH-HHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h--CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH--HHHHH-HHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 8 7888999999988876 44999999999999886542 34444 8877764 458899999999988876
Q ss_pred c
Q 006281 639 L 639 (652)
Q Consensus 639 ~ 639 (652)
.
T Consensus 389 ~ 389 (452)
T 3e4b_A 389 T 389 (452)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=9.4e-14 Score=131.01 Aligned_cols=245 Identities=10% Similarity=-0.013 Sum_probs=188.9
Q ss_pred CChhHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHH
Q 006281 344 IDPRSAIVFFNFMIEKGRV---PTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAY 420 (652)
Q Consensus 344 ~~~~~a~~~~~~m~~~~~~---~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~ 420 (652)
+++++|+..++++.+.... .+...+..+...+...|++++|...|+++.+.... +..+|..+...|...|++++|+
T Consensus 19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHH
Confidence 4567777777777765321 13566778888899999999999999999887554 7889999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006281 421 GVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKG 500 (652)
Q Consensus 421 ~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~ 500 (652)
..|+++.+.... +..++..+...+...|++++|.+.++++.+.. |+.......+..+...|++++|...+++.....
T Consensus 98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 174 (275)
T 1xnf_A 98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS 174 (275)
T ss_dssp HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 999999987433 57788899999999999999999999999863 444444455556677799999999998887653
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHV 577 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 577 (652)
.++...+ .++..+...++.++|.+.+++++...+.. +...+..++.++.+.|++++|...++++.... +..+.
T Consensus 175 -~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 250 (275)
T 1xnf_A 175 -DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHNFV 250 (275)
T ss_dssp -CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTTCH
T ss_pred -CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chhHH
Confidence 2343344 47777888889999999999887765432 25678889999999999999999999998842 22234
Q ss_pred HHHHHHhccccHHHHHHHH
Q 006281 578 ILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~ 596 (652)
....++...|++++|++.+
T Consensus 251 ~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhhHHHH
Confidence 4567788889999998877
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.60 E-value=7.1e-11 Score=123.26 Aligned_cols=231 Identities=10% Similarity=0.028 Sum_probs=155.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHH-HHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 349 AIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELV-EVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMK 427 (652)
Q Consensus 349 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~ 427 (652)
+..+|++.+.. ++-+...|...+..+...|+.+.|. .+|+......+ .+...|-..+....+.|++++|.++|+++.
T Consensus 328 v~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l 405 (679)
T 4e6h_A 328 MTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCI 405 (679)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 44566666654 3336777777777777888888886 88888876432 356667777888888888999998888877
Q ss_pred HcCC---------CCC------------HHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhc-C
Q 006281 428 RKGL---------DPD------------VSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFSEV-G 484 (652)
Q Consensus 428 ~~~~---------~p~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-g 484 (652)
.... .|+ ..+|...+....+.|+.+.|..+|....+. + ......|...+..-.+. +
T Consensus 406 ~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~ 484 (679)
T 4e6h_A 406 DRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISK 484 (679)
T ss_dssp HHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTS
T ss_pred HHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCC
Confidence 5410 131 235777777777788888888888888765 2 12233343333332333 4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 485 EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 485 ~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
+++.|..+|+..++. +.-+...|...+......|+.+.|..+|++++...+.+ ...+|..++..-.+.|+.+.+.++
T Consensus 485 d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 485 DTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred CHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 578888888888875 33355666677777777888888888888887766532 445788888888888888888888
Q ss_pred HHHhhhCCCCchhHHHHHHHH
Q 006281 563 LRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 563 ~~~~~~~~~~~~~~~~l~~~~ 583 (652)
.+++.+..++.+....++.-|
T Consensus 564 ~~R~~~~~P~~~~~~~f~~ry 584 (679)
T 4e6h_A 564 EKRFFEKFPEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHSTTCCHHHHHHHHT
T ss_pred HHHHHHhCCCCcHHHHHHHHh
Confidence 888877333333333444333
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-14 Score=141.32 Aligned_cols=263 Identities=14% Similarity=0.055 Sum_probs=117.1
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHH
Q 006281 373 KNLCKRNKSDELVEVYKVLSANDYFTDM----ESYNVMVSFLCTSGRLREAYGVIQEMKRK----GL-DPDVSFYNSLME 443 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~-~p~~~~~~~ll~ 443 (652)
..+...|++++|...|+++.+.... +. ..+..+...|...|++++|+..+++..+. +. .....++..+..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 134 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGN 134 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHH
Confidence 3344445555555555554443221 11 23444445555555555555555544322 00 011233444444
Q ss_pred HHHhcCChhhHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHHHHHC--
Q 006281 444 ACCREDLLRPAKKLWDQMFAS----G-CSGNLKTYNILISKFSEVGE-----------------IEGALRLFHNMLEK-- 499 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~~m~~~-- 499 (652)
.+...|++++|...+++..+. + .+....++..+...|...|+ +++|++.+++..+.
T Consensus 135 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~ 214 (411)
T 4a1s_A 135 TLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMR 214 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 455555555555555544432 0 01122344445555555555 55555555444321
Q ss_pred --CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 500 --GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 500 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
+..+ ...++..+...+...|++++|.+.+++++..... .....+..+..+|...|++++|++.++++.. .+
T Consensus 215 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 294 (411)
T 4a1s_A 215 DLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV 294 (411)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 1000 1224444555555555555555555554432211 0112444555555555555555555554433 10
Q ss_pred --CC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 571 --GH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-----LQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 571 --~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.. ...+..++.++...|++++|++.++++.+..+.. ....+..++.+|...|++++|.+++++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 295 ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 00 2234455555555555555555555554432111 122333355555555555555555555443
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-13 Score=118.47 Aligned_cols=168 Identities=12% Similarity=0.097 Sum_probs=95.6
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...|..+...+...|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...++........ +...+..+...
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~ 82 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGSA 82 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHHH
Confidence 4455555555555555555555555555543 344555555555555666666666665555543222 34445555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+...++++.+.+.++++....+. +...+..+..++.+.|++++|++.++++.+ +|.++..+..++.++.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHH
Confidence 55566666666666655555443 455555566666666666666666665554 5555555666666666666666666
Q ss_pred HHHHHHHhcCCC
Q 006281 594 EHIKWIQESSPT 605 (652)
Q Consensus 594 ~~~~~~~~~~~~ 605 (652)
+.++++.+.+|.
T Consensus 162 ~~~~~al~~~p~ 173 (184)
T 3vtx_A 162 KYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHTTHH
T ss_pred HHHHHHHhCCcc
Confidence 666666665554
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.56 E-value=6.6e-14 Score=142.49 Aligned_cols=210 Identities=12% Similarity=0.019 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLL-RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
+++++..+++..... ..+...+..+...+...|++ ++|++.|++..+.. +.+...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555555544332 12455566666666666666 66666666666553 3445666666666666666666666666
Q ss_pred HHHHCCCCCCHhhHHHHHHHHHcC---------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------CCHH
Q 006281 495 NMLEKGVAPDATTYTSLLEGLCQE---------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR--------GHFL 557 (652)
Q Consensus 495 ~m~~~~~~p~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~ 557 (652)
+..+. .|+...+..+...+... |++++|.+.|+++++.++. +...+..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 66644 34555666666666666 6666666666666666554 555666666666666 6666
Q ss_pred HHHHHHHHhhh-CC---CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHH
Q 006281 558 VATKLLRGLSS-DL---GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 558 ~A~~~~~~~~~-~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+|++.++++.. +| ..+..+..++.+|...|++++|++.++++.+.+|+.... +..+..++...|++++|.+.+
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a-~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEP-QQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHHh
Confidence 66666666655 55 555666666666666666777777776666666665333 333666666666666666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.56 E-value=4.1e-13 Score=117.92 Aligned_cols=168 Identities=15% Similarity=0.078 Sum_probs=150.9
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
.+...|..+...|...|++++|++.|++.++.... +..++..+..+|.+.|++++|...++++....+. +...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence 46778999999999999999999999999987544 6788999999999999999999999999888776 677888899
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCch
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEP 626 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (652)
..+...++++.|.+.+.++.. .|.+...+..++.++.+.|++++|++.++++.+.+|.... .+..++.+|.+.|++++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIR-AYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhh-HHHHHHHHHHHCCCHHH
Confidence 999999999999999999877 7778889999999999999999999999999999998854 45559999999999999
Q ss_pred HHHHHHHHHHcc
Q 006281 627 ILLLLHALQEKC 638 (652)
Q Consensus 627 a~~~~~~~~~~g 638 (652)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.5e-12 Score=122.13 Aligned_cols=219 Identities=9% Similarity=0.037 Sum_probs=141.7
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-------cCCH-------HHHHHHHHHHHH-cCCCCCHHHHHHHHHHHH
Q 006281 382 DELVEVYKVLSANDYFTDMESYNVMVSFLCT-------SGRL-------REAYGVIQEMKR-KGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 382 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~p~~~~~~~ll~~~~ 446 (652)
+.|..+|++.....+. +...|..++..+.. .|++ ++|..+|++..+ ... -+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 5666777777665433 56667766666653 3664 777777777776 322 24556777777777
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH-cCCCHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGN-LK-TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC-QETNLQA 523 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~-~~g~~~~ 523 (652)
+.|++++|.++|+++.+. .|+ .. .|..++..+.+.|++++|..+|++.++... ++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHH
Confidence 777777777777777764 333 33 677777777777777777777777776432 23333433322221 2577777
Q ss_pred HHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC--CchhHHHHHHHHhccccHHHHHHHHHH
Q 006281 524 AFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG--HSDSHVILLKSLADAREVEMAIEHIKW 598 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 598 (652)
|.++|+++++..+. +...|..++..+.+.|++++|+.+|+++... ++ ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 77777777766554 5667777777777777777777777777663 21 234566667777777777777777777
Q ss_pred HHhcCCCC
Q 006281 599 IQESSPTM 606 (652)
Q Consensus 599 ~~~~~~~~ 606 (652)
+.+..|+.
T Consensus 267 a~~~~p~~ 274 (308)
T 2ond_A 267 RFTAFREE 274 (308)
T ss_dssp HHHHTTTT
T ss_pred HHHHcccc
Confidence 77777753
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-13 Score=137.95 Aligned_cols=293 Identities=12% Similarity=0.031 Sum_probs=176.5
Q ss_pred HHHhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHH
Q 006281 339 GSVSSIDPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFL 410 (652)
Q Consensus 339 ~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~ 410 (652)
..+..|++++|+..|++..+.+.... ...+..+...+...|++++|...+++.... +..| ...++..+...|
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 97 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTL 97 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 34556778888888877776532211 245666667777777888877777765432 1111 234566677777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc-
Q 006281 411 CTSGRLREAYGVIQEMKRKGLD-PD----VSFYNSLMEACCREDL--------------------LRPAKKLWDQMFAS- 464 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~-p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~- 464 (652)
...|++++|...+++..+.... ++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 177 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLV 177 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 7777888887777776654210 11 2356666677777777 77777777766542
Q ss_pred ---CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC
Q 006281 465 ---GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD 535 (652)
Q Consensus 465 ---~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 535 (652)
+. +....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++++...
T Consensus 178 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 257 (406)
T 3sf4_A 178 TALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLA 257 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 11 11234566677777777777777777777664311 112 1256666777777777777777777765432
Q ss_pred CC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 536 VM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 536 ~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.. ....++..++..+...|++++|.+.++++.. ...+ ...+..++.++...|++++|++.++++.+..
T Consensus 258 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 337 (406)
T 3sf4_A 258 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 337 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 11 0134566677777777777777777776644 1111 2345567777777777777777777777776
Q ss_pred CCCc-----HHHHHHHHHHhhcCCCCchHHHHH
Q 006281 604 PTML-----QEISAELFASLSSSSYPEPILLLL 631 (652)
Q Consensus 604 ~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~ 631 (652)
+... ...+..++.++...|+.......+
T Consensus 338 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~ 370 (406)
T 3sf4_A 338 REVGDKSGELTARLNLSDLQMVLGLSYSTNNSI 370 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred HHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence 5554 223444555555555555444333
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.1e-13 Score=131.56 Aligned_cols=266 Identities=12% Similarity=0.040 Sum_probs=179.1
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSANDYFTD----MESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSL 441 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~l 441 (652)
....+...|++++|...|+++.+.... + ...+..+...|...|++++|...+++.... +..| ...++..+
T Consensus 11 ~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 89 (338)
T 3ro2_A 11 EGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 89 (338)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHH
Confidence 344566777777777777777665332 2 346667777777778888887777765432 1111 23456667
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGC-SGN----LKTYNILISKFSEVGE--------------------IEGALRLFHNM 496 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~m 496 (652)
...+...|++++|...+++..+..- .++ ..++..+...|...|+ +++|.+.+++.
T Consensus 90 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 169 (338)
T 3ro2_A 90 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEEN 169 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 7777778888888887777654310 111 3366777777777888 88888877776
Q ss_pred HHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC-----CccHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 006281 497 LEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV-----MLARSILSTFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 497 ~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.+. +..| ...++..+...+...|++++|.+.+++++.... .....++..++..+...|++++|.+.+++.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 249 (338)
T 3ro2_A 170 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 249 (338)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 532 1111 134567777788888888888888888765321 112336777888888899999998888876
Q ss_pred hh---CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC-----cHHHHHHHHHHhhcCCCCchHHHHHHHH
Q 006281 567 SS---DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM-----LQEISAELFASLSSSSYPEPILLLLHAL 634 (652)
Q Consensus 567 ~~---~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 634 (652)
.. ...+ ...+..++.++...|++++|+..++++.+..+.. ....+..++.+|...|++++|.+.++++
T Consensus 250 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 329 (338)
T 3ro2_A 250 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 329 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 54 1111 3356678888889999999999998887653321 2334556888888999999999999887
Q ss_pred HHc
Q 006281 635 QEK 637 (652)
Q Consensus 635 ~~~ 637 (652)
.+.
T Consensus 330 ~~~ 332 (338)
T 3ro2_A 330 LEI 332 (338)
T ss_dssp HHC
T ss_pred HHH
Confidence 765
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.1e-11 Score=118.57 Aligned_cols=216 Identities=9% Similarity=0.062 Sum_probs=145.0
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-------hcCCh-------HHHHHHHHHHHhC-CCCcCHHHHHHHHHHHH
Q 006281 347 RSAIVFFNFMIEKGRVPTLSTLSNLSKNLC-------KRNKS-------DELVEVYKVLSAN-DYFTDMESYNVMVSFLC 411 (652)
Q Consensus 347 ~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~ 411 (652)
++|...|++.+... +-+...|..+...+. +.|++ ++|..+|++..+. .+. +...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 56677777776643 235556666665554 34665 7788888877763 332 5567777777777
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHH
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPD-VS-FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS-EVGEIEG 488 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~ 488 (652)
+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|++..+.. +++...|........ ..|++++
T Consensus 111 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp HTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHH
T ss_pred hcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHH
Confidence 788888888888877765 333 22 67777777777788888888888777654 344444443333322 2577888
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-CCc--cHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 489 ALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-VML--ARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 489 A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
|..+|++.++.... +...|..++..+.+.|++++|..+|++++... ..| ...+|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888877764222 56677777777777788888888888777753 233 355677777777777888888887777
Q ss_pred hhh
Q 006281 566 LSS 568 (652)
Q Consensus 566 ~~~ 568 (652)
+.+
T Consensus 267 a~~ 269 (308)
T 2ond_A 267 RFT 269 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 766
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=6.8e-13 Score=135.00 Aligned_cols=214 Identities=10% Similarity=0.027 Sum_probs=177.6
Q ss_pred hHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHH
Q 006281 381 SDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRL-REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWD 459 (652)
Q Consensus 381 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 459 (652)
++.+...++....... .+...+..+..++...|++ ++|+..|++..+.... +...|..+..+|...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5566666666655433 3777888888889999999 9999999988877433 57788888899999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC--------CCHH
Q 006281 460 QMFASGCSGNLKTYNILISKFSEV---------GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--------TNLQ 522 (652)
Q Consensus 460 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--------g~~~ 522 (652)
+..+. .|+...+..+..+|... |++++|++.|++..+.... +...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98876 46678888888889888 9999999999999876433 677888888888888 8999
Q ss_pred HHHHHHHHhhhCCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 599 (652)
+|.+.|+++++.++. -+...+..+..+|...|++++|.+.++++.+ +|..+..+..++.++...|++++|++.+.++
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999887761 2788899999999999999999999999877 7778888899999999999999998876544
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=133.40 Aligned_cols=296 Identities=14% Similarity=0.011 Sum_probs=209.6
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCH---HHHHHHH-HHHhcCChhHHHHHHHHHHHc----CCCC-CH
Q 006281 295 RTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDD---DVLNALI-GSVSSIDPRSAIVFFNFMIEK----GRVP-TL 365 (652)
Q Consensus 295 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~-~~~~~~~~~~a~~~~~~m~~~----~~~~-~~ 365 (652)
....+......+...|++++|...++.+.+....... .++..+. ..+..|++++|...+++.... +..| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 3445556677888899999999999998876443221 2333333 335568999999999987543 2112 24
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TD----MESYNVMVSFLCTSGR--------------------LREAY 420 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~li~~~~~~g~--------------------~~~a~ 420 (652)
..+..+...+...|++++|...+++..+.... ++ ..++..+...|...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 56777778889999999999999988765211 11 3377888889999999 99999
Q ss_pred HHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCC----HHHHHHHHHHHHhcCCHHHHH
Q 006281 421 GVIQEMKRK----GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFASG-CSGN----LKTYNILISKFSEVGEIEGAL 490 (652)
Q Consensus 421 ~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A~ 490 (652)
..+++.... +..| ...++..+...+...|++++|.+.+++..+.. -.++ ..++..+...|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 999876543 1111 13467788888999999999999999887641 0122 237888888999999999999
Q ss_pred HHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHH
Q 006281 491 RLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 491 ~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
..+++..+.... ++ ..++..+...|...|++++|.+.+++++..... ....++..+..+|...|++++|.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 327 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM 327 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999988753111 11 456778888899999999999999988764211 12456788899999999999999
Q ss_pred HHHHHhhh---CCCC----chhHHHHHHHHhccccHH
Q 006281 561 KLLRGLSS---DLGH----SDSHVILLKSLADAREVE 590 (652)
Q Consensus 561 ~~~~~~~~---~~~~----~~~~~~l~~~~~~~g~~~ 590 (652)
+.+++..+ .... ...+..++.++...|+..
T Consensus 328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 99988754 1111 224445666666666554
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=138.12 Aligned_cols=168 Identities=18% Similarity=0.107 Sum_probs=136.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
+.+..+|+.|..+|.+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|+++++.++. +...|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 344677888888888888888888888888875333 5677888888888888888888888888887766 67788888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCc
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (652)
..+|.+.|++++|++.++++.+ +|.....+..++.+|...|++++|++.++++.+.+|+.....++ ++.+|...|+++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~-L~~~l~~~g~~~ 162 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN-LAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHH-HHHHHHHTTCCT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhh-hhhHHHhcccHH
Confidence 8888888888888888888877 77778888888888888888888888888888888887544444 888888888888
Q ss_pred hHHHHHHHHHHc
Q 006281 626 PILLLLHALQEK 637 (652)
Q Consensus 626 ~a~~~~~~~~~~ 637 (652)
+|.+.++++.+.
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888877654
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=6.3e-12 Score=124.73 Aligned_cols=231 Identities=8% Similarity=0.024 Sum_probs=171.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CC----CCCHHHHH
Q 006281 406 MVSFLCTSGRLREAYGVIQEMKRK----GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS--GC----SGNLKTYN 474 (652)
Q Consensus 406 li~~~~~~g~~~~a~~~~~~~~~~----~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~----~~~~~~~~ 474 (652)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|+++.|...+++..+. .. +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556778889999999999988764 1111 2356788888889999999999999888764 11 11245788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCCCccHHHHH
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILS 544 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~ 544 (652)
.+..+|...|++++|...|++..+.... ++ ..++..+...|...|++++|.+.|++++. .+......++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999888753111 12 24678888899999999999999999887 34233567788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhC---CCCc---hhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSD---LGHS---DSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELF 615 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~ 615 (652)
.++.++.+.|++++|.+.+++...- ..++ ..+..++..+...|+ +++|+..+++.. ........+..++
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la 346 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA 346 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence 8999999999999999999887541 1122 234568888888888 778888877762 1122244555699
Q ss_pred HHhhcCCCCchHHHHHHHHHHcc
Q 006281 616 ASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
..|...|++++|.+++++..+..
T Consensus 347 ~~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 347 KYYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999887753
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-12 Score=127.19 Aligned_cols=233 Identities=7% Similarity=-0.048 Sum_probs=179.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-----CHHHHH
Q 006281 371 LSKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-P-----DVSFYN 439 (652)
Q Consensus 371 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p-----~~~~~~ 439 (652)
....+...|++++|...+++..+. +-.+ ...++..+...|...|++++|+..+++..+.... + ...+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445677889999999999998764 1111 3457888999999999999999999987754111 1 135678
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhHH
Q 006281 440 SLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GV-APDATTYT 509 (652)
Q Consensus 440 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~ 509 (652)
.+...|...|++++|.+.+++..+. +-. ....++..+..+|...|++++|++.+++..+. +. .....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 8889999999999999999988754 101 11247888999999999999999999998862 22 22456788
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCC----CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCCchhHHHHHHH
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHD----VMLARSILSTFMISLCRRGH---FLVATKLLRGLSSDLGHSDSHVILLKS 582 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~l~~~ 582 (652)
.+...+...|++++|...+++++... -......+..+...+...|+ +++|+.++++....+.....+..++..
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 89999999999999999999887642 11122335678888889999 888888888875444445567789999
Q ss_pred HhccccHHHHHHHHHHHHhcC
Q 006281 583 LADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|...|++++|.+.++++.+..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999988754
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.1e-12 Score=131.89 Aligned_cols=265 Identities=14% Similarity=0.077 Sum_probs=193.7
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHhC----CC-CcCHHHHHHHHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTL----STLSNLSKNLCKRNKSDELVEVYKVLSAN----DY-FTDMESYNVMVSFLC 411 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~li~~~~ 411 (652)
+..|++++|+..|++..+.+.. +. ..+..+...|...|++++|...+++..+. +. .....++..+...|.
T Consensus 59 ~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 137 (411)
T 4a1s_A 59 CNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLK 137 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHH
Confidence 4455666666666666655322 22 45667777788888888888888876543 11 123457788888999
Q ss_pred hcCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHHHHhcCC-----------------hhhHHHHHHHHHHc----C
Q 006281 412 TSGRLREAYGVIQEMKRKG----LD-PDVSFYNSLMEACCREDL-----------------LRPAKKLWDQMFAS----G 465 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~----~~-p~~~~~~~ll~~~~~~g~-----------------~~~a~~~~~~~~~~----~ 465 (652)
..|++++|...+++..+.. .. ....++..+...+...|+ +++|.+.+++..+. +
T Consensus 138 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~ 217 (411)
T 4a1s_A 138 VMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLG 217 (411)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcC
Confidence 9999999999998876541 11 124467788888889999 89998888877643 1
Q ss_pred C-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--
Q 006281 466 C-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-- 537 (652)
Q Consensus 466 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 537 (652)
. .....++..+...|...|++++|...+++..+.... ++ ..++..+...|...|++++|...+++++.....
T Consensus 218 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 297 (411)
T 4a1s_A 218 DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELG 297 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcC
Confidence 1 122357888889999999999999999988753110 12 237788889999999999999999988764321
Q ss_pred ---ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 538 ---LARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 538 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
....++..+..++...|++++|.+.++++... .. ....+..++.++...|++++|.+.++++.+..+..
T Consensus 298 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 376 (411)
T 4a1s_A 298 EREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXXX 376 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCHH
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc
Confidence 12467888999999999999999999987551 11 12367789999999999999999999999887654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=3.3e-12 Score=124.21 Aligned_cols=265 Identities=14% Similarity=0.048 Sum_probs=188.0
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHh
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPT---LSTLSNLSKNLCKRNKSDELVEVYKVLSAN----DYF-TDMESYNVMVSFLCT 412 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~ 412 (652)
+..|++++|+..|++..+...... ...+..+...+...|++++|...+++..+. +.. ....++..+...|..
T Consensus 16 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 95 (338)
T 3ro2_A 16 CKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKV 95 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 445566666666666665432211 345667777788888888888888776532 111 124577788888999
Q ss_pred cCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCC--------------------hhhHHHHHHHHHHc---
Q 006281 413 SGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDL--------------------LRPAKKLWDQMFAS--- 464 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~--------------------~~~a~~~~~~~~~~--- 464 (652)
.|++++|...+++..+... .++ ..++..+...+...|+ +++|.+.+++..+.
T Consensus 96 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~ 175 (338)
T 3ro2_A 96 LGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTA 175 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999988765311 112 3367778888888888 88898888876543
Q ss_pred -CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC
Q 006281 465 -GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM 537 (652)
Q Consensus 465 -~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 537 (652)
+. .....++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++++.....
T Consensus 176 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~ 255 (338)
T 3ro2_A 176 LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQ 255 (338)
T ss_dssp HTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh
Confidence 11 12245678888899999999999999998875311 011 236778888899999999999999987653211
Q ss_pred -----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 538 -----LARSILSTFMISLCRRGHFLVATKLLRGLSSD---LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 538 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
....++..+...+...|++++|.+.++++... ... ...+..++.++...|++++|...++++.+..+.
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 256 LKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred hcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 12456788899999999999999999887541 111 235668999999999999999999999887654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=6.6e-13 Score=127.67 Aligned_cols=236 Identities=14% Similarity=0.065 Sum_probs=114.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------C-C
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRK-------GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS------G-C 466 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~-------~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~-~ 466 (652)
.++..+...+...|++++|..+|+++.+. .......++..+...+...|++++|...+++..+. + .
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 34455555555555555555555554442 11112334455555555555555555555555432 1 1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-----
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK------GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH----- 534 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----- 534 (652)
+....++..+...|...|++++|...++++.+. +..| ....+..+...+...|++++|.++|++++..
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 122345555566666666666666666665542 1111 2334555566666666666666666665543
Q ss_pred -C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC----------CCCchhHH------HHHHHHhccccHHHHHHHH
Q 006281 535 -D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSSD----------LGHSDSHV------ILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 535 -~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----------~~~~~~~~------~l~~~~~~~g~~~~A~~~~ 596 (652)
+ ......++..++.++...|++++|.+.++++... +.....+. .....+...+.+.+|...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 1 1112344566666666666666666666665431 11111111 2222223344455555566
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 597 KWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+++....|.. ...+..++.+|.+.|++++|.+++++..+.
T Consensus 268 ~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDSPTV-TTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------CHHH-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCCchH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 6666555544 334444777777777777777777766553
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=4.9e-13 Score=128.56 Aligned_cols=241 Identities=14% Similarity=0.048 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006281 365 LSTLSNLSKNLCKRNKSDELVEVYKVLSAN-------DYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK------GL 431 (652)
Q Consensus 365 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~ 431 (652)
..++..+...+...|++++|..+++++.+. .......++..+...|...|++++|...+++.... +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 455667777788888888888888887762 22234567788888889999999999998887754 22
Q ss_pred CC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 006281 432 DP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS------GC-SGNLKTYNILISKFSEVGEIEGALRLFHNMLEK---- 499 (652)
Q Consensus 432 ~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~---- 499 (652)
.| ...++..+...+...|++++|.+.++++.+. +. +.....+..+...|...|++++|+++++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 22 3456778888888999999999999888764 21 223556788888899999999999999988764
Q ss_pred --CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC-------CCc-------cHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 500 --GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-------VML-------ARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 500 --~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~-------~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
+..| ...++..+...|...|++++|.+.++++++.. ..+ ....+..+...+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 2122 24467788888999999999999999887531 111 112233333344455666667777
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
++.... .+.....+..++.+|.+.|++++|++.++++.+..|.
T Consensus 267 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 267 YKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 777665 3445567889999999999999999999999887553
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.2e-11 Score=109.85 Aligned_cols=202 Identities=10% Similarity=0.040 Sum_probs=156.0
Q ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006281 398 TDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILI 477 (652)
Q Consensus 398 ~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 477 (652)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|.+.+++..+.. +.+...|..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 36678888999999999999999999999987654677777778899999999999999999999875 55678889999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCH-------hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHHHHHHHHHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDA-------TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARSILSTFMIS 549 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~ 549 (652)
.+|...|++++|+..|++..+.... +. ..|..+...+...|++++|.+.|+++++.++.. +...+..+..+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 9999999999999999999875332 34 457778888889999999999999988775420 24567778888
Q ss_pred HHhcCCHHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 550 LCRRGHFLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
+...|+ ..++++... +.....+ ........+.+++|+..++++.+.+|++..
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNKEKY--ASEKAKADAAFKKAVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCHHHH--HHHHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHH-----HHHHHHHhcccCCHHHH--HHHHHHHHHHHHHHHHHHHHHhhcCCCCHH
Confidence 766554 334444442 2222233 223344567899999999999999998843
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.41 E-value=1e-11 Score=108.96 Aligned_cols=164 Identities=13% Similarity=0.093 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...++++.+... .+...+..+...+...|++++|...++++++..+. +...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence 3455556666666666666666666654322 24556666666666777777777777766665543 555666667777
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
...|++++|.+.++++.. .|..+..+..++.++...|++++|++.++++.+..|... ..+..++.++...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG-KVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch-HHHHHHHHHHHHcCCHHHHHH
Confidence 777777777777776655 455566666777777777777777777777777766653 333447777777777777777
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
.++++.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77766654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.2e-11 Score=117.81 Aligned_cols=227 Identities=14% Similarity=0.116 Sum_probs=121.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhhHHHHHHHHHHc--CC---C-CCHHHHHH
Q 006281 407 VSFLCTSGRLREAYGVIQEMKRKGL-DPD----VSFYNSLMEACCREDLLRPAKKLWDQMFAS--GC---S-GNLKTYNI 475 (652)
Q Consensus 407 i~~~~~~g~~~~a~~~~~~~~~~~~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~---~-~~~~~~~~ 475 (652)
...+...|++++|+..|++..+... .++ ..++..+...|...|+++.|...+++..+. .. . ....+++.
T Consensus 108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 187 (378)
T 3q15_A 108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV 187 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence 3444555666666666655543210 111 234555555566666666666666555432 00 0 11345556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCCCccHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDVMLARSILST 545 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~ 545 (652)
+..+|...|++++|.+.|++..+. +..+ ...++..+...|...|++++|.+.|++++. ..+. ...++..
T Consensus 188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~ 266 (378)
T 3q15_A 188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFG 266 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHH
Confidence 666666666666666666665532 1111 123455566666666777777776666665 4433 2555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC---CCCc---hhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSD---LGHS---DSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++.++.+.|++++|.+.+++.... ..++ ..+..+...+...|+ +++|+..+++... .......+..++.
T Consensus 267 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~--~~~~~~~~~~la~ 344 (378)
T 3q15_A 267 LSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNL--HAYIEACARSAAA 344 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCC--hhHHHHHHHHHHH
Confidence 666677777777777776665441 1111 123345555555555 5566665554211 1111233444667
Q ss_pred HhhcCCCCchHHHHHHHHHH
Q 006281 617 SLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 617 ~~~~~g~~~~a~~~~~~~~~ 636 (652)
.|...|++++|.+.+++..+
T Consensus 345 ~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 345 VFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHH
Confidence 77777777777777766654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=107.78 Aligned_cols=167 Identities=14% Similarity=0.117 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
.+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+... .+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP-DNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 34444555555556666666555555432 33455555666666666666666666666655422 24555666666666
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
..|++++|.+.++++....+. +...+..++.++...|++++|.+.++++.. .+..+..+..++.++...|++++|.+.
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 166 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPH 166 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHH
Confidence 666666666666666655443 555666666677777777777777776655 455556666777777777777777777
Q ss_pred HHHHHhcCCCC
Q 006281 596 IKWIQESSPTM 606 (652)
Q Consensus 596 ~~~~~~~~~~~ 606 (652)
++++.+..|+.
T Consensus 167 ~~~~~~~~~~~ 177 (186)
T 3as5_A 167 FKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHCC
T ss_pred HHHHHHcCCCc
Confidence 77776665544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.5e-11 Score=112.01 Aligned_cols=195 Identities=9% Similarity=-0.050 Sum_probs=149.3
Q ss_pred CCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006281 433 PDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 433 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~ 512 (652)
.|+..+......+...|++++|.+.|+...+..-+++...+..+..++...|++++|+..|++..+.... +...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHH
Confidence 3567788888888999999999999999888752277777777888899999999999999999876433 566788888
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCCccH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC--CchhHHHHHHH
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVMLAR-------SILSTFMISLCRRGHFLVATKLLRGLSS-DLG--HSDSHVILLKS 582 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~~ 582 (652)
..+...|++++|.+.|+++++..+. +. ..|..+...+...|++++|++.++++.+ +|. .+..+..++.+
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 8899999999999999998887765 44 4577788888889999999999998877 555 56777788888
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+...|+ ..++++....+... ..+... .....|.+++|+..+++..+.
T Consensus 163 ~~~~~~-----~~~~~a~~~~~~~~-~~~~~~--~~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 163 FYNNGA-----DVLRKATPLASSNK-EKYASE--KAKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHHH-----HHHHHHGGGTTTCH-HHHHHH--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-----HHHHHHHhcccCCH-HHHHHH--HHHHHHHHHHHHHHHHHHhhc
Confidence 876554 34556666655442 223212 234456789999999988876
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.6e-10 Score=114.20 Aligned_cols=311 Identities=9% Similarity=-0.032 Sum_probs=217.0
Q ss_pred CCCChhhHHHHHHHH--HccCCHHHHHHHHHHHHcCC--CCCCH--HHHHHHHHH---HhcCChhHHH---------HHH
Q 006281 292 VAPRTNDYREFILGL--IVERRICEAKELGEVIVSGK--FTIDD--DVLNALIGS---VSSIDPRSAI---------VFF 353 (652)
Q Consensus 292 ~~p~~~~~~~ll~~~--~~~~~~~~a~~~~~~~~~~~--~~~~~--~~~~~l~~~---~~~~~~~~a~---------~~~ 353 (652)
+.|+..+-..+-..| +..+++++|..+++.+.... ...+. ..|-.++.. +..++...+. ..+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 344444444555554 78999999999999876532 22232 334444432 1123333333 566
Q ss_pred HHHHHcCCCCCH--H--HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-c----CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 354 NFMIEKGRVPTL--S--TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-T----DMESYNVMVSFLCTSGRLREAYGVIQ 424 (652)
Q Consensus 354 ~~m~~~~~~~~~--~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li~~~~~~g~~~~a~~~~~ 424 (652)
+.+.....+.+. . .+......+...|++++|...|++..+.... + ...++..+...|...|+++.|+..++
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 665432211111 1 1222334567899999999999998764211 1 24578889999999999999999999
Q ss_pred HHHHcCC-CC-----CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 425 EMKRKGL-DP-----DVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLF 493 (652)
Q Consensus 425 ~~~~~~~-~p-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~ 493 (652)
+..+... .+ ...+++.+...|...|++++|.+.+++..+. +.. ....++..+..+|...|++++|++.+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 8775421 11 2456788889999999999999999988764 211 12457888999999999999999999
Q ss_pred HHHHH-----CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC----CccHHHHHHHHHHHHhcCC---HHHHHH
Q 006281 494 HNMLE-----KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV----MLARSILSTFMISLCRRGH---FLVATK 561 (652)
Q Consensus 494 ~~m~~-----~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~---~~~A~~ 561 (652)
++..+ .... ...++..+...+.+.|++++|...++++++... ......+..+...+...|+ +.+|+.
T Consensus 246 ~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 246 QKAAKVSREKVPDL-LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHCGGG-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHhhCChh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 99986 4322 367788899999999999999999999877421 2223456667777778888 888888
Q ss_pred HHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 562 LLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 562 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
.+++....+.....+..++..|...|++++|...++++.+..
T Consensus 325 ~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 888754433344566789999999999999999999987653
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=130.63 Aligned_cols=165 Identities=14% Similarity=0.109 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...|+.+...+.+.|++++|++.|++.++.. +-+..+|..+..+|.+.|++++|++.|++.++.... +...|..+..+
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3456666666666666666666666666653 344566666777777777777777777776654322 45666777777
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
|...|++++|++.|+++++.++. +...+..+..+|.+.|++++|++.++++.+ +|..+..+..++.++...|++++|.
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~ 165 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYD 165 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHH
Confidence 77777777777777777766655 566677777777777777777777777666 6666677777777777777777777
Q ss_pred HHHHHHHhc
Q 006281 594 EHIKWIQES 602 (652)
Q Consensus 594 ~~~~~~~~~ 602 (652)
+.++++.+.
T Consensus 166 ~~~~kal~l 174 (723)
T 4gyw_A 166 ERMKKLVSI 174 (723)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777776654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=2e-10 Score=113.49 Aligned_cols=289 Identities=12% Similarity=0.013 Sum_probs=190.5
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-cCH----HHHHHHHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPTLS----TLSNLSKNLCKRNKSDELVEVYKVLSANDYF-TDM----ESYNVMVSFLC 411 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~~~~ 411 (652)
+..|++++|...+++........+.. .+..+...+...|+++.|...+++....... .+. .++..+...+.
T Consensus 25 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 104 (373)
T 1hz4_A 25 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 104 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 45688999999988877754333332 4455566777889999998888876643111 121 23566777888
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCC--C--CHHHHHHHHHHH
Q 006281 412 TSGRLREAYGVIQEMKRK----GLD--PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCS--G--NLKTYNILISKF 480 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~----~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~ 480 (652)
..|++++|...+++.... +.. |. ...+..+...+...|++++|...+++..+..-. + ...++..+...+
T Consensus 105 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~ 184 (373)
T 1hz4_A 105 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 184 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHH
Confidence 889999999888887653 211 22 345566777788889999999988888765211 1 235677777888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC--HhhHH----HHHHHHHcCCCHHHHHHHHHHhhhCCCCc---cHHHHHHHHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPD--ATTYT----SLLEGLCQETNLQAAFEVFNKSVNHDVML---ARSILSTFMISLC 551 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~ 551 (652)
...|++++|...+++.......++ ..... ..+..+...|++++|...+++.......+ ....+..+..++.
T Consensus 185 ~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~ 264 (373)
T 1hz4_A 185 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 264 (373)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHH
Confidence 888999999998888775321111 11111 22334668889999999888877654321 1234567778888
Q ss_pred hcCCHHHHHHHHHHhhhC---CCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 552 RRGHFLVATKLLRGLSSD---LGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~---~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
..|++++|.+.++++... .+. ...+..++.++...|+.++|...++++....+.. .....+...|
T Consensus 265 ~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~~------g~~~~~~~~g-- 336 (373)
T 1hz4_A 265 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRT------GFISHFVIEG-- 336 (373)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH------CCCHHHHTTH--
T ss_pred HcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhccc------cHHHHHHHcc--
Confidence 889999988888876441 111 1245567778888889999999888888775432 1333344555
Q ss_pred chHHHHHHHHHHc
Q 006281 625 EPILLLLHALQEK 637 (652)
Q Consensus 625 ~~a~~~~~~~~~~ 637 (652)
+....+++++...
T Consensus 337 ~~~~~ll~~~~~~ 349 (373)
T 1hz4_A 337 EAMAQQLRQLIQL 349 (373)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 5666677766554
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.33 E-value=4.5e-10 Score=110.95 Aligned_cols=298 Identities=10% Similarity=-0.009 Sum_probs=194.2
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCCCCHH----HHHHH-HHHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFTIDDD----VLNAL-IGSVSSIDPRSAIVFFNFMIEKGR-VPT----LSTLSNLS 372 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l-~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~ 372 (652)
...+...|++++|...++.........+.. .++.+ ......|++++|...+.+..+... ..+ ..++..+.
T Consensus 21 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 100 (373)
T 1hz4_A 21 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 100 (373)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 335566899999999988887765433332 12222 223456899999998888765321 112 22345666
Q ss_pred HHHHhcCChHHHHHHHHHHHhC----CCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH
Q 006281 373 KNLCKRNKSDELVEVYKVLSAN----DYF--T-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDP----DVSFYNSL 441 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p----~~~~~~~l 441 (652)
..+...|++++|...++...+. +.. | ....+..+...+...|++++|...+++........ ...++..+
T Consensus 101 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l 180 (373)
T 1hz4_A 101 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 180 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Confidence 7788889999999988887643 221 2 23456667788888999999999998877653221 23457777
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCCC-HHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HhhHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASGCSGN-LKTYN-----ILISKFSEVGEIEGALRLFHNMLEKGVAPD---ATTYTSLL 512 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~l~ 512 (652)
...+...|++++|...+++.....-.++ ...+. ..+..+...|++++|...+++.......+. ...+..+.
T Consensus 181 a~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la 260 (373)
T 1hz4_A 181 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 260 (373)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHH
Confidence 7888889999999999988875411111 11121 233447788999999999888775432211 23456777
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCC----CCccH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccc
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHD----VMLAR-SILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g 587 (652)
..+...|++++|...+++++... ..++. ..+..+..++...|+.++|...+++....... ......+...|
T Consensus 261 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~----~g~~~~~~~~g 336 (373)
T 1hz4_A 261 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR----TGFISHFVIEG 336 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH----HCCCHHHHTTH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc----ccHHHHHHHcc
Confidence 88888899999999998876532 22122 35666778888899999999988887652100 11223444555
Q ss_pred cHHHHHHHHHHHHhcCCCC
Q 006281 588 EVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~~ 606 (652)
+....+++.+....|..
T Consensus 337 --~~~~~ll~~~~~~~~~~ 353 (373)
T 1hz4_A 337 --EAMAQQLRQLIQLNTLP 353 (373)
T ss_dssp --HHHHHHHHHHHHTTCSC
T ss_pred --HHHHHHHHHHHhCCCCc
Confidence 56677777777777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.25 E-value=6.5e-11 Score=111.78 Aligned_cols=129 Identities=9% Similarity=-0.021 Sum_probs=54.8
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC------C-CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----------C
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH------D-VMLARSILSTFMISLCRRGHFLVATKLLRGLSS----------D 569 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~ 569 (652)
++..+...|...|++++|...|++++.. . ......++..++.++...|++++|.++++++.. .
T Consensus 129 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~ 208 (283)
T 3edt_B 129 QLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVN 208 (283)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 4444444555555555555555554433 0 111233455555555555555555555554432 1
Q ss_pred CCCchhHHHHHHHHhccc------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 570 LGHSDSHVILLKSLADAR------EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+.....+..+...+...+ .+..+...++.+....|.. ...+..++.+|...|++++|.+++++..+
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 209 GDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV-NTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp SSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 112222333333322211 1222222222222222222 33344466667777777777777766543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.24 E-value=1.3e-09 Score=100.57 Aligned_cols=248 Identities=8% Similarity=-0.046 Sum_probs=166.1
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 336 ALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR 415 (652)
Q Consensus 336 ~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 415 (652)
.+-..+-.|.+..++.-. .+...........-+.++|...|+++.. ....|....+..+.. |...+
T Consensus 19 ~ikn~fy~G~yq~~i~e~---~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~-~~~~~- 84 (310)
T 3mv2_B 19 NIKQNYYTGNFVQCLQEI---EKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQ-FLDTK- 84 (310)
T ss_dssp HHHHHHTTTCHHHHTHHH---HTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHH-HHTTT-
T ss_pred HHHHHHHhhHHHHHHHHH---HhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHH-Hhccc-
Confidence 344455566666666522 2211122233334445777788877642 122334334433333 33322
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 416 LREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SGNLKTYNILISKFSEVGEIEGALRLFH 494 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 494 (652)
|+..|++....+ .++..++..+..++...|++++|++++.+.+..|- .-+...+..++..+.+.|+.+.|.+.++
T Consensus 85 ---a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~ 160 (310)
T 3mv2_B 85 ---NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFD 160 (310)
T ss_dssp ---CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 778888877665 45666667888889999999999999999876652 2467788889999999999999999999
Q ss_pred HHHHCCCCC-----CHhhHHHHHHHHH--c--CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 495 NMLEKGVAP-----DATTYTSLLEGLC--Q--ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 495 ~m~~~~~~p-----~~~~~~~l~~~~~--~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
+|.+. .| +..+...++.++. . .+++++|..+|+++....+ +......+..++.+.|++++|.+.++.
T Consensus 161 ~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p--~~~~~~lLln~~~~~g~~~eAe~~L~~ 236 (310)
T 3mv2_B 161 NYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP--TWKTQLGLLNLHLQQRNIAEAQGIVEL 236 (310)
T ss_dssp HHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC--SHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC--CcccHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99865 55 3556666666632 2 3489999999999866553 322222333378899999999999987
Q ss_pred hhh-----------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 566 LSS-----------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 566 ~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+.+ +|.++.+...++......|+ +|.+++.++.+..|+.+
T Consensus 237 l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp 287 (310)
T 3mv2_B 237 LLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHA 287 (310)
T ss_dssp HHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCH
T ss_pred HHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCCh
Confidence 654 25666676556555556676 88999999999999885
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.23 E-value=3.4e-10 Score=105.47 Aligned_cols=188 Identities=9% Similarity=-0.009 Sum_probs=123.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC--CCCCHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPD---VSFYNSLMEACCREDLLRPAKKLWDQMFASG--CSGNLKTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~ 473 (652)
+...+..+...+.+.|++++|+..|+++.+.... + ...+..+..++.+.|++++|...|++..+.. -+.....+
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 4556666777777778888888888877766322 2 4566667777777777777777777777652 11224456
Q ss_pred HHHHHHHHh--------cCCHHHHHHHHHHHHHCCCCCCH-hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHH
Q 006281 474 NILISKFSE--------VGEIEGALRLFHNMLEKGVAPDA-TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILS 544 (652)
Q Consensus 474 ~~l~~~~~~--------~g~~~~A~~~~~~m~~~~~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 544 (652)
..+..++.. .|++++|+..|+++++.. |+. .....+. .+...... ....+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~--------------~~~~~~~~----~~~~~~ 152 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQ--------------KIRELRAK----LARKQY 152 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHH--------------HHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHH--------------HHHHHHHH----HHHHHH
Confidence 666666766 777777777777777542 221 1111111 01000000 011246
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhh-CCC---CchhHHHHHHHHhcc----------ccHHHHHHHHHHHHhcCCCCc
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSS-DLG---HSDSHVILLKSLADA----------REVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~-~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++.+|.+.|++++|+..++++.. .|. .+..+..++.+|... |++++|+..++++.+..|+.+
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 229 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSP 229 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCCh
Confidence 678889999999999999999876 444 234677888888766 899999999999999999875
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=3.7e-11 Score=100.82 Aligned_cols=144 Identities=8% Similarity=-0.065 Sum_probs=114.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 476 LISKFSEVGEIEGALRLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
|...+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|+++++.++. +...|..+..+|.+.|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcC
Confidence 344566678889999888887653 22 3456667888899999999999999999988876 7888999999999999
Q ss_pred CHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH-HHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 555 HFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH-IKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
++++|+..++++.+ +|.++..+..++.++.+.|++++|.+. ++++.+.+|++ +.++.....++...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~-~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGS-PAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTC-HHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCC-HHHHHHHHHHHHHhCc
Confidence 99999999999877 788888999999999999998776654 68999999987 4556656777777765
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.1e-10 Score=124.28 Aligned_cols=134 Identities=10% Similarity=0.008 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+..+|...|++++|++.|+++.+.... +...|..+..++...|++++|.+.|+++++.++. +...+..+..+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~ 510 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAAT 510 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHH
Confidence 344444444444444555555444444433211 3344444444444445555555555444444433 33444444444
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+.+.|++++ ++.++++.+ +|.++..+..++.++.+.|++++|++.++++.+.+|..
T Consensus 511 ~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~ 567 (681)
T 2pzi_A 511 AELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHF 567 (681)
T ss_dssp HHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTH
T ss_pred HHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCccc
Confidence 444455444 444444443 44444444444444555555555555555544444444
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=4e-10 Score=106.74 Aligned_cols=162 Identities=14% Similarity=0.069 Sum_probs=81.9
Q ss_pred HHhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHH
Q 006281 445 CCREDLLRPAKKLWDQMFAS----GCSGN-LKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEG 514 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~ 514 (652)
|...|++++|.+.|++..+. |-+++ ..+|+.+..+|...|++++|+..|++.++. |-.+ ...++..+...
T Consensus 47 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~ 126 (292)
T 1qqe_A 47 YRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEI 126 (292)
T ss_dssp HHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34445555555555444332 11111 334555555555555555555555555432 1000 02345555666
Q ss_pred HHcC-CCHHHHHHHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCch-------hHHHHH
Q 006281 515 LCQE-TNLQAAFEVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSD-------SHVILL 580 (652)
Q Consensus 515 ~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-------~~~~l~ 580 (652)
|... |++++|+..|+++++..+.. ...++..++..+.+.|++++|+..++++.. .+.... .+..++
T Consensus 127 ~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 206 (292)
T 1qqe_A 127 LENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKG 206 (292)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence 6664 66666666666665432211 023455666666666666666666666655 222211 244556
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.++...|++++|+..++++.+.+|..
T Consensus 207 ~~~~~~g~~~~A~~~~~~al~l~p~~ 232 (292)
T 1qqe_A 207 LCQLAATDAVAAARTLQEGQSEDPNF 232 (292)
T ss_dssp HHHHHTTCHHHHHHHHHGGGCC----
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 66666666666666666666665543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.19 E-value=1.3e-09 Score=98.65 Aligned_cols=188 Identities=7% Similarity=-0.042 Sum_probs=116.4
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH-hhHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGC-SG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP-DA-TTYTS 510 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p-~~-~~~~~ 510 (652)
...+..+...+.+.|++++|...|+.+.+... .| ....+..+..+|.+.|++++|+..|+++++..... .. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 34455566677788888888888888876521 11 13466777778888888888888888887653221 11 13334
Q ss_pred HHHHHHc------------------CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC
Q 006281 511 LLEGLCQ------------------ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH 572 (652)
Q Consensus 511 l~~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 572 (652)
+..++.. .|++++|...|+++++..+. +............ +...+
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~----------~~~~~------ 146 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVF----------LKDRL------ 146 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHH----------HHHHH------
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHH----------HHHHH------
Confidence 4444433 34455555555555544433 1111111100000 00000
Q ss_pred chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcH--HHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 573 SDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQ--EISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 573 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
......++..+.+.|++++|+..++++.+..|+.+. ..+..++.++.+.|++++|.+.++++...+.
T Consensus 147 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 011246778889999999999999999999988752 3455599999999999999999998887643
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=89.49 Aligned_cols=128 Identities=15% Similarity=0.175 Sum_probs=53.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (652)
..+...+...|++++|..+++++.+.... +...+..+...+...|++++|..+++++...++. +...+..++..+...
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 82 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQ 82 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHh
Confidence 33444444444444444444444432211 2333444444444444444444444444433322 233334444444444
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 603 (652)
|++++|.+.++++.. .|.....+..++.++...|++++|...++++.+.+
T Consensus 83 ~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 83 GDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred cCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 444444444444433 22233334444444444444444444444444433
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.17 E-value=5.7e-09 Score=96.34 Aligned_cols=243 Identities=9% Similarity=0.000 Sum_probs=168.4
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
..-.|++..++.-...+ ....+...-.-+.++|...|+++.. ....|....+..+... ...+ |
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~-~~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQF-LDTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHH-HTTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHH-hccc----H
Confidence 34568888877733322 2222233334455888888877642 1223444344444333 3322 7
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
+..|++..+.+ .++..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.+++|.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 78888887765 566667778889999999999999999998866541 2567888899999999999999999999977
Q ss_pred CCC---CccHHHHHHHHHH--HHhcC--CHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc----
Q 006281 534 HDV---MLARSILSTFMIS--LCRRG--HFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQES---- 602 (652)
Q Consensus 534 ~~~---~~~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---- 602 (652)
..+ ..+..+...++.+ ....| ++.+|..+|+++.+.+++..+...+..++.+.|++++|.+.++.+.+.
T Consensus 165 ~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~ 244 (310)
T 3mv2_B 165 AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSV 244 (310)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHT
T ss_pred cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 653 1134555556555 33334 899999999999887655233334444889999999999999987775
Q ss_pred ------CCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 603 ------SPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 603 ------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+|.+...+.| ++......|+ +|.++++++.+..
T Consensus 245 ~~k~~~~p~~~~~LaN-~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 245 EQKENAVLYKPTFLAN-QITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp TTCHHHHSSHHHHHHH-HHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred cccccCCCCCHHHHHH-HHHHHHHhCh--HHHHHHHHHHHhC
Confidence 4667666656 5555556676 8999999998764
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.16 E-value=5.5e-10 Score=105.32 Aligned_cols=204 Identities=13% Similarity=0.046 Sum_probs=117.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhhHHHHHHHHHHc------C
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRK------GLDP-DVSFYNSLMEACCREDLLRPAKKLWDQMFAS------G 465 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~------~~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~ 465 (652)
...++..+...|...|++++|+..+++..+. +..| ...++..+...+...|++++|.+.+++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445666667777777777777777666543 1112 2345666666777777777777777766543 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC--
Q 006281 466 -CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK------GVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD-- 535 (652)
Q Consensus 466 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-- 535 (652)
.+....++..+...|...|++++|...++++.+. +..| ...++..+...|...|++++|...+++++...
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~ 201 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE 201 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223556667777777777777777777777653 1122 24456667777777777777777777766531
Q ss_pred ------CCccHHHHHHHHHHHHhcCC------HHHHHHHHHHhhhC-CCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 536 ------VMLARSILSTFMISLCRRGH------FLVATKLLRGLSSD-LGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 536 ------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
.......+..+...+...+. +.++...++..... +.....+..++.+|...|++++|...++++.+.
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11122233333333333222 33333334333322 223345667888888888888888888887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.16 E-value=9.7e-10 Score=102.31 Aligned_cols=62 Identities=8% Similarity=-0.026 Sum_probs=51.7
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCCCCc--HHHHHHHHHHhhcC----------CCCchHHHHHHHHHHc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSPTML--QEISAELFASLSSS----------SYPEPILLLLHALQEK 637 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~ 637 (652)
+..++.+|...|++++|+..++++.+..|+.. ...+..++.+|... |++++|.+.++++.+.
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 36789999999999999999999999988753 33444488888766 8889999999998876
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.16 E-value=3.3e-08 Score=92.42 Aligned_cols=227 Identities=7% Similarity=0.011 Sum_probs=179.0
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc---CC
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG--RLREAYGVIQEMKRKGLDPDVSFYNSLMEAC----CRE---DL 450 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~----~~~---g~ 450 (652)
..++|+.+++.+...++. +..+|+.-...+...| ++++++..++.+.....+ +..+|+.--..+ ... ++
T Consensus 48 ~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 48 YSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence 346788888888887655 6667888888888888 999999999999887544 445565544444 444 78
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC------HH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIE--GALRLFHNMLEKGVAPDATTYTSLLEGLCQETN------LQ 522 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------~~ 522 (652)
++++++.++.+.+.. +.+..+|+.-.-++.+.|.++ ++++.++++++..+. |...|+.-...+.+.|. ++
T Consensus 126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~ 203 (306)
T 3dra_A 126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID 203 (306)
T ss_dssp THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence 899999999999876 778888888888888888888 999999999987665 77788877777777776 89
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH-HHHHHHHHhhh-C---CCCchhHHHHHHHHhccccHHHHHHHHH
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL-VATKLLRGLSS-D---LGHSDSHVILLKSLADAREVEMAIEHIK 597 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~-~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 597 (652)
++++.+++++..++. |.+.|..+...+.+.|+.. ++..+..++.. . +.++.++..++.++.+.|+.++|+++++
T Consensus 204 eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~ 282 (306)
T 3dra_A 204 EELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD 282 (306)
T ss_dssp HHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 999999999999887 8899999988898888844 45567776654 2 4566677789999999999999999999
Q ss_pred HHHh-cCCCCcHHHHH
Q 006281 598 WIQE-SSPTMLQEISA 612 (652)
Q Consensus 598 ~~~~-~~~~~~~~~~~ 612 (652)
.+.+ .+|.. ...|+
T Consensus 283 ~l~~~~Dpir-~~yW~ 297 (306)
T 3dra_A 283 LLKSKYNPIR-SNFWD 297 (306)
T ss_dssp HHHHTTCGGG-HHHHH
T ss_pred HHHhccChHH-HHHHH
Confidence 9987 57765 44444
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.1e-09 Score=103.31 Aligned_cols=168 Identities=12% Similarity=-0.023 Sum_probs=137.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHH
Q 006281 467 SGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTF 546 (652)
Q Consensus 467 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 546 (652)
+.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++...++. ........
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~-~~~~~~~~ 191 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQD-TRYQGLVA 191 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCS-HHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcc-hHHHHHHH
Confidence 556677778888899999999999999999876433 6778888999999999999999999988776653 22233334
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCC
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML-QEISAELFASLSSSSYP 624 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~ 624 (652)
...+...++.++|++.++++.. +|.++..+..++.++...|++++|++.++++.+.+|+.. ...+..++.+|...|+.
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 4446777888889999988876 788889999999999999999999999999999999862 34455599999999999
Q ss_pred chHHHHHHHHHH
Q 006281 625 EPILLLLHALQE 636 (652)
Q Consensus 625 ~~a~~~~~~~~~ 636 (652)
++|...+++...
T Consensus 272 ~~a~~~~r~al~ 283 (287)
T 3qou_A 272 DALASXYRRQLY 283 (287)
T ss_dssp CHHHHHHHHHHH
T ss_pred CcHHHHHHHHHH
Confidence 999999887654
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7e-10 Score=99.04 Aligned_cols=182 Identities=12% Similarity=-0.006 Sum_probs=123.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS-FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.+......+...|++++|+..|++..+. .|+.. .|.. ...... ..........+..+|
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~-----~~~~~~--------------~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYW-----TNVDKN--------------SEISSKLATELALAY 64 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHH-----HHSCTT--------------SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHH-----hhhcch--------------hhhhHHHHHHHHHHH
Confidence 3444455666777777777777777665 23221 1111 000000 011122334478888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC--HHH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH--FLV 558 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 558 (652)
.+.|++++|+..|++.++.... +...+..+...+...|++++|...|+++++.++. +...+..+..+|...|. ...
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHH
Confidence 9999999999999999876433 6788888999999999999999999999998876 77888888888876654 445
Q ss_pred HHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 559 ATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 559 A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+...++.+...++....+...+.++...|++++|+..++++.+..|+.
T Consensus 143 ~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 143 LETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 566666554422222244566777888899999999999999999875
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=103.43 Aligned_cols=212 Identities=9% Similarity=-0.017 Sum_probs=150.3
Q ss_pred ChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCChhhH
Q 006281 380 KSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRK----GLDPD-VSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 380 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~~~ll~~~~~~g~~~~a 454 (652)
++++|...|... ...|...|++++|...|.+.... |..++ ..+|+.+..+|.+.|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 367777766654 44567788888888888876653 21111 45788888888888999999
Q ss_pred HHHHHHHHHcCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HhhHHHHHHHHHcCCCHHH
Q 006281 455 KKLWDQMFASGC---SG--NLKTYNILISKFSEV-GEIEGALRLFHNMLEKGVAP-D----ATTYTSLLEGLCQETNLQA 523 (652)
Q Consensus 455 ~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~p-~----~~~~~~l~~~~~~~g~~~~ 523 (652)
+..+++..+... .+ -..+++.+...|... |++++|+..|++.++..... + ..++..+...+...|++++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 176 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE 176 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence 888888775410 11 145788888899986 99999999999887531110 1 3467888889999999999
Q ss_pred HHHHHHHhhhCCCCccH------HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh-----HHHHHHHHh--ccccH
Q 006281 524 AFEVFNKSVNHDVMLAR------SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS-----HVILLKSLA--DAREV 589 (652)
Q Consensus 524 a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~-----~~~l~~~~~--~~g~~ 589 (652)
|+..|++++...+.... ..+..++.++...|++++|+..+++... +|....+ +..++.++. ..+++
T Consensus 177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~ 256 (292)
T 1qqe_A 177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL 256 (292)
T ss_dssp HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999887654322 2567788889999999999999999877 4433332 234555554 45778
Q ss_pred HHHHHHHHHHHhcCCCC
Q 006281 590 EMAIEHIKWIQESSPTM 606 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~ 606 (652)
++|+..++++...+|..
T Consensus 257 ~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 257 SEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHTTSSCCCHHH
T ss_pred HHHHHHhccCCccHHHH
Confidence 99999998888777654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=89.23 Aligned_cols=130 Identities=12% Similarity=0.080 Sum_probs=114.1
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.|..+...+...|++++|..+++++++.++. +...+..++..+...|++++|.++++++.. .+..+..+..++..+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 5677888899999999999999999887765 677888899999999999999999999877 66677788899999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.|++++|++.++++.+..|.... .+..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAE-AWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 99999999999999999887744 44459999999999999999999887653
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-08 Score=97.40 Aligned_cols=100 Identities=11% Similarity=0.008 Sum_probs=49.9
Q ss_pred hhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC-HHHHHHH
Q 006281 170 IDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR-VEEAFKV 248 (652)
Q Consensus 170 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~ 248 (652)
++.|..+|+.+... -|. |+++.+..+|++.... .| +..+|...+....+.++ .+....+
T Consensus 11 i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~---~p-s~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 11 LSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK---SY-NLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp -CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT---CC-CHHHHHHHHHHHHHHC----CTHHH
T ss_pred hHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc---CC-CHHHHHHHHHHHHHhCchHHHHHHH
Confidence 66666666666543 122 6677777777766654 33 45566555555444442 2344455
Q ss_pred HHHHhhC-CCCc-CHHHHHHHHHHHH----hcCCHHHHHHHHHHHHh
Q 006281 249 LDELRIR-ECKP-DFIAYRIVAEEFK----LMGSVFEREVVLKKKRK 289 (652)
Q Consensus 249 ~~~m~~~-~~~p-~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~ 289 (652)
|+..... |..| +...|...+..+. ..++.+.+..+|+....
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5554432 3222 4445554444332 12345555555555554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-08 Score=95.37 Aligned_cols=221 Identities=9% Similarity=-0.044 Sum_probs=180.1
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH----Hhc--
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED--LLRPAKKLWDQMFASGCSGNLKTYNILISKF----SEV-- 483 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-- 483 (652)
.....++|+.++++++..+.. +...|+.--..+...| +++++++.++.+...+ +.+..+|+.-...+ ...
T Consensus 45 ~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~ 122 (306)
T 3dra_A 45 AEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNN 122 (306)
T ss_dssp TTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred cCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccc
Confidence 334457999999999988543 5566787778888888 9999999999999875 56667777665555 455
Q ss_pred -CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH--HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC-----
Q 006281 484 -GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ--AAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----- 555 (652)
Q Consensus 484 -g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 555 (652)
+++++++++++.+.+...+ +..+|..-...+.+.|.++ ++++.++++++.++. +...|.....++.+.|.
T Consensus 123 ~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 123 DFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhh
Confidence 7899999999999987655 7888888888888888888 999999999999987 88889888888888877
Q ss_pred -HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH-HHHHHHHHHHHhcC---CCCcHHHHHHHHHHhhcCCCCchHHH
Q 006281 556 -FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV-EMAIEHIKWIQESS---PTMLQEISAELFASLSSSSYPEPILL 629 (652)
Q Consensus 556 -~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~ 629 (652)
++++++.++++.. +|.+.++|.-+...+.+.|+. +.+.+..+++.+.+ |.. ...+..++++|.+.|+.++|.+
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTS-SFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESC-HHHHHHHHHHHHHTTCHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCC-HHHHHHHHHHHHccCCHHHHHH
Confidence 8999999998876 888999999999999888874 44566777776654 444 4556669999999999999999
Q ss_pred HHHHHHHc
Q 006281 630 LLHALQEK 637 (652)
Q Consensus 630 ~~~~~~~~ 637 (652)
+++++.++
T Consensus 280 ~~~~l~~~ 287 (306)
T 3dra_A 280 VYDLLKSK 287 (306)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhc
Confidence 99998863
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.3e-09 Score=97.37 Aligned_cols=124 Identities=11% Similarity=-0.001 Sum_probs=100.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc-
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE- 588 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~- 588 (652)
+..+|.+.|++++|...|+++++.++. +...+..+..++...|++++|++.++++.+ +|.++..+..++.+|...|+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~ 138 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ 138 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence 888899999999999999999998887 788999999999999999999999999988 88889999999999877664
Q ss_pred -HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 589 -VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 589 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.+.+...++++....| ....+..++.++...|++++|.+.++++.+.
T Consensus 139 ~~~~~~~~~~~~~~~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l 186 (208)
T 3urz_A 139 EKKKLETDYKKLSSPTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILR 186 (208)
T ss_dssp HHHHHHHHHC---CCCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCCCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4566777777654332 2223333677777899999999999987765
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.12 E-value=6.7e-10 Score=96.21 Aligned_cols=162 Identities=14% Similarity=0.022 Sum_probs=120.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH-H
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-L 550 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~ 550 (652)
.+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...|++++...+ ++..+..+... +
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLEL 84 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHH
Confidence 3455666777888888888888887754322 567788888888888899999888888776654 44333332222 2
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCCchHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML-QEISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~ 628 (652)
...+...+|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|... ...+..++.++...|+.++|.
T Consensus 85 ~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~ 164 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA 164 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred HhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence 222333457888888766 777888899999999999999999999999999988752 344555889999999999999
Q ss_pred HHHHHHHH
Q 006281 629 LLLHALQE 636 (652)
Q Consensus 629 ~~~~~~~~ 636 (652)
..+++...
T Consensus 165 ~~y~~al~ 172 (176)
T 2r5s_A 165 SKYRRQLY 172 (176)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.11 E-value=8.5e-10 Score=117.46 Aligned_cols=170 Identities=9% Similarity=-0.005 Sum_probs=98.1
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 411 CTSGRLREAYGVIQEMK--------RKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~--------~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
...|++++|++.+++.. +.. ..+...+..+..++...|++++|.+.|+++.+.+ +.+...|..+..+|..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 44566666666666655 221 1133455555556666666666666666666543 4455566666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL 562 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 562 (652)
.|++++|++.|++..+.... +...+..+..++.+.|++++ .+.|+++++.++. +...+..+..++.+.|++++|++.
T Consensus 480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 66666666666666654322 34455556666666666666 6666666665554 455566666666666666666666
Q ss_pred HHHhhh-CCCCchhHHHHHHHHhc
Q 006281 563 LRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 563 ~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
++++.+ +|.....+..++.++..
T Consensus 557 ~~~al~l~P~~~~a~~~~~~~~~~ 580 (681)
T 2pzi_A 557 LDEVPPTSRHFTTARLTSAVTLLS 580 (681)
T ss_dssp HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred HHhhcccCcccHHHHHHHHHHHHc
Confidence 666655 44445555556655544
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.7e-08 Score=90.12 Aligned_cols=177 Identities=13% Similarity=0.055 Sum_probs=117.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006281 418 EAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG----EIEGALRLF 493 (652)
Q Consensus 418 ~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~ 493 (652)
+|+..|++..+.| +...+..+...|...+++++|.+.|++..+.| +...+..|...|.. + ++++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 3555666665553 45556666666666677777777777666643 44555666666665 5 677777777
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHc----CCCHHHHHHHHHHhhhCCCC-ccHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006281 494 HNMLEKGVAPDATTYTSLLEGLCQ----ETNLQAAFEVFNKSVNHDVM-LARSILSTFMISLCR----RGHFLVATKLLR 564 (652)
Q Consensus 494 ~~m~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~ 564 (652)
++..+.| +...+..|...|.. .+++++|+++|+++.+.+.. ..+..+..|...|.. .+++++|+++++
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 7776654 45566666666665 67777888888777766642 125566777777777 677888888887
Q ss_pred HhhhCCCCchhHHHHHHHHhcc-c-----cHHHHHHHHHHHHhcCC
Q 006281 565 GLSSDLGHSDSHVILLKSLADA-R-----EVEMAIEHIKWIQESSP 604 (652)
Q Consensus 565 ~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 604 (652)
+..+.+.++.++..|+..|... | ++++|+..++++.+.+.
T Consensus 154 ~A~~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 154 GSSSLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 7766555666777777777543 2 77888888877777654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.1e-08 Score=91.43 Aligned_cols=177 Identities=15% Similarity=0.071 Sum_probs=146.7
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC----CHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET----NLQAAFEV 527 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g----~~~~a~~~ 527 (652)
.+|.+.|++..+.| +...+..|...|...+++++|++.|++..+.| +...+..|...|.. + ++++|.++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 35778888888754 67788889999999999999999999999875 66778888888887 6 89999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCC---chhHHHHHHHHhc----cccHHHHHHHH
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGH---SDSHVILLKSLAD----AREVEMAIEHI 596 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~l~~~~~~----~g~~~~A~~~~ 596 (652)
|+++.+.+ ++..+..|...|.. .+++++|++++++..+..+. +.++..|+..|.. .+++++|+..+
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 99998765 55678888888887 88999999999999885443 7888899999988 88999999999
Q ss_pred HHHHhcCCCCcHHHHHHHHHHhhcC-C-----CCchHHHHHHHHHHcccc
Q 006281 597 KWIQESSPTMLQEISAELFASLSSS-S-----YPEPILLLLHALQEKCLD 640 (652)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~g~~ 640 (652)
+++.+. +......++ |+.+|... | ++++|.+.+++..+.|..
T Consensus 153 ~~A~~~-~~~~~a~~~-Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 153 KGSSSL-SRTGYAEYW-AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HHHHHT-SCTTHHHHH-HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHc-CCCHHHHHH-HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 999988 334344444 88888653 3 899999999999888753
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.06 E-value=4.4e-07 Score=92.03 Aligned_cols=125 Identities=11% Similarity=0.036 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc-CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQ-ETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
..|...+..+.+.++.+.|..+|++. .. ...+...|...+..-.. .++.+.|..+|+..++..+. ++..+...++.
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~ 363 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF 363 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence 45666666666677788888888888 32 12233344332222222 23688888888888775543 45566667777
Q ss_pred HHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 550 LCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
..+.|+.+.|..+++++.. ....|...+..-...|+.+.+.++++++.+
T Consensus 364 e~~~~~~~~aR~l~er~~k---~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 364 LLRIGDEENARALFKRLEK---TSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHTCHHHHHHHHHHSCC---BHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888732 345566666666677888888887777664
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=5.3e-10 Score=93.74 Aligned_cols=143 Identities=13% Similarity=-0.003 Sum_probs=100.6
Q ss_pred HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH
Q 006281 443 EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ 522 (652)
Q Consensus 443 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~ 522 (652)
..+...|++++|++.++...... +.+...+..+...|.+.|++++|++.|++.++.... +..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchH
Confidence 34445667777777777766542 223445566777788888888888888888765433 5677788888888888888
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHH-HHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKL-LRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
+|...|+++++.++. +...+..+..+|.+.|++++|.+. ++++.+ +|.++..+......+...|+
T Consensus 83 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888888877765 677788888888888887765544 566655 77777777777777666653
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.06 E-value=2.5e-09 Score=111.93 Aligned_cols=159 Identities=8% Similarity=-0.053 Sum_probs=126.3
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
.|++++|.+.+++..+.. +.+...|..+...|...|++++|.+.|++..+.... +...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence 478899999999998764 556889999999999999999999999999976433 678899999999999999999999
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc---ccHHHHHHHHHHHHhcC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA---REVEMAIEHIKWIQESS 603 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~ 603 (652)
|+++++.++. +...+..+..++.+.|++++|.+.++++.+ +|.+...+..++.++... |++++|.+.++++.+.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 9999998876 788899999999999999999999999877 777888899999999999 99999999999999999
Q ss_pred CCCcHH
Q 006281 604 PTMLQE 609 (652)
Q Consensus 604 ~~~~~~ 609 (652)
|.....
T Consensus 159 p~~~~~ 164 (568)
T 2vsy_A 159 VGAVEP 164 (568)
T ss_dssp CCCSCH
T ss_pred CcccCh
Confidence 987543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.7e-08 Score=91.24 Aligned_cols=187 Identities=11% Similarity=0.052 Sum_probs=134.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCH---HHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLD-PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNL---KTY 473 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~-p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~ 473 (652)
+...+..+...+...|++++|+..|+++.+.... |. ...+..+..++.+.|++++|+..|+++.+.. +.+. ..+
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~ 81 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM 81 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence 4456677788899999999999999999987432 11 3567788899999999999999999999863 2222 245
Q ss_pred HHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 474 NILISKFSE------------------VGEIEGALRLFHNMLEKGVAPDAT-TYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 474 ~~l~~~~~~------------------~g~~~~A~~~~~~m~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
..+..++.. .|++++|...|+++++. .|+.. .+...... ..+...
T Consensus 82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~---- 145 (225)
T 2yhc_A 82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDR---- 145 (225)
T ss_dssp HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHH----
T ss_pred HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHH----
Confidence 555555554 57899999999999975 34432 22211110 001110
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
.......++..|.+.|++++|+..++++.+ .|.++ ..+..++.++.+.|++++|++.++.+....|..
T Consensus 146 ----~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~ 217 (225)
T 2yhc_A 146 ----LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT 217 (225)
T ss_dssp ----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred ----HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence 011223567788999999999999999877 44443 467789999999999999999999999888765
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-09 Score=109.94 Aligned_cols=164 Identities=12% Similarity=-0.009 Sum_probs=127.2
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006281 413 SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRL 492 (652)
Q Consensus 413 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 492 (652)
.|++++|+..|++..+.... +...+..+...+...|++++|.+.+++..+.. +.+...+..+..+|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 47899999999998876432 57889999999999999999999999999875 56788999999999999999999999
Q ss_pred HHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc---CCHHHHHHHHHHhhh-
Q 006281 493 FHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR---GHFLVATKLLRGLSS- 568 (652)
Q Consensus 493 ~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~- 568 (652)
|++..+.... +...+..+..++...|++++|.+.|+++++.++. +...+..+..++... |++++|.+.++++.+
T Consensus 80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 9999986433 6788999999999999999999999999988876 678889999999999 999999999999877
Q ss_pred CCCCchhHHHHH
Q 006281 569 DLGHSDSHVILL 580 (652)
Q Consensus 569 ~~~~~~~~~~l~ 580 (652)
+|.....+..++
T Consensus 158 ~p~~~~~~~~l~ 169 (568)
T 2vsy_A 158 GVGAVEPFAFLS 169 (568)
T ss_dssp TCCCSCHHHHTT
T ss_pred CCcccChHHHhC
Confidence 666666666555
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=8.2e-09 Score=83.27 Aligned_cols=110 Identities=13% Similarity=0.029 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+......|.+.|++++|++.|+++++.++. +...|..+..++.+.|++++|++.++++.+ +|..+..+..++.++.
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 45667778888899999999999988888776 778888899999999999999999998877 7788888889999999
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
..|++++|++.++++.+.+|++... ...|..+
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a-~~~l~~~ 124 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEA-REGVRNC 124 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHH-HHHHHHh
Confidence 9999999999999999999988443 3335443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=6.1e-09 Score=98.11 Aligned_cols=162 Identities=12% Similarity=0.072 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHH-HH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSL-LE 513 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l-~~ 513 (652)
...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++... .|+....... ..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 3445555556666677777777777666653 445566666666777777777777777666543 3333322222 22
Q ss_pred HHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC--chhHHHHHHHHhccccHH
Q 006281 514 GLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH--SDSHVILLKSLADAREVE 590 (652)
Q Consensus 514 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~ 590 (652)
.+...++.++|.+.+++++..++. +...+..+...+...|++++|++.+.++.. +|.. ...+..++.++...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 244555666667777776666665 566666677777777777777777776665 4444 456667777777777777
Q ss_pred HHHHHHHHHH
Q 006281 591 MAIEHIKWIQ 600 (652)
Q Consensus 591 ~A~~~~~~~~ 600 (652)
+|...+++..
T Consensus 273 ~a~~~~r~al 282 (287)
T 3qou_A 273 ALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHH
T ss_pred cHHHHHHHHH
Confidence 7777666654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=89.14 Aligned_cols=100 Identities=10% Similarity=-0.037 Sum_probs=70.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+...+.+.|++++|.+.|++++..++. ++..|..+..+|...|++++|++.++++.. +|.++..+..++.+|.
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 34555666667777777777777777766665 666677777777777777777777777666 6666677777777777
Q ss_pred ccccHHHHHHHHHHHHhcCCCC
Q 006281 585 DAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..|++++|+..++++.+..|+.
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777776654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.95 E-value=5e-09 Score=90.64 Aligned_cols=156 Identities=10% Similarity=0.033 Sum_probs=80.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH-HHcCC
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG-LCQET 519 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~-~~~~g 519 (652)
+...+...|++++|...|++..+.. +.+...+..+..++...|++++|+..|++..... |+...+..+... +...+
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~ 88 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQA 88 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhc
Confidence 3344455555555555555544432 3344455555555555555555555555544321 222221111111 11111
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC--chhHHHHHHHHhccccHHHHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH--SDSHVILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 596 (652)
+..+|...++++++.++. +...+..+..++...|++++|+..++++.. +|.. +..+..++.++...|+.++|+..+
T Consensus 89 ~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 89 AESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp TSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred ccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 222356666666665554 555666666666666666666666666655 3322 335666666666666666666666
Q ss_pred HHHH
Q 006281 597 KWIQ 600 (652)
Q Consensus 597 ~~~~ 600 (652)
+++.
T Consensus 168 ~~al 171 (176)
T 2r5s_A 168 RRQL 171 (176)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.95 E-value=3.9e-08 Score=88.12 Aligned_cols=127 Identities=15% Similarity=0.054 Sum_probs=66.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
.+...+...|++++|+..|++.. .|+...+..+...+...|++++|...|++++..++. +...+..++.++...|
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcc
Confidence 33444445555555555555442 334455555555555555555555555555554433 4445555555555555
Q ss_pred CHHHHHHHHHHhhh-CCCCc----------------hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 555 HFLVATKLLRGLSS-DLGHS----------------DSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
++++|++.++++.. .|.+. ..+..++.++...|++++|++.++++.+..|..
T Consensus 86 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp CHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred cHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 55555555555544 22222 445556666666666666666666666665544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=2e-08 Score=95.70 Aligned_cols=201 Identities=13% Similarity=0.013 Sum_probs=103.6
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHH
Q 006281 377 KRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT-SGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAK 455 (652)
Q Consensus 377 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~ 455 (652)
..|++++|.+++++..+.... . +.+ .++++.|...|.+. ...|...|++++|.
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK 56 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence 356788888888877653110 0 011 34455555554443 23444556666666
Q ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCC--HhhHHHHHHHHHcCCCHHHHH
Q 006281 456 KLWDQMFAS----GCS-GNLKTYNILISKFSEVGEIEGALRLFHNMLEKG--V-APD--ATTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 456 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~--~-~p~--~~~~~~l~~~~~~~g~~~~a~ 525 (652)
+.|.+..+. +-. .-..+|+.+..+|...|++++|+..|++.++.- . .|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 665555432 100 012355555566666666666666666554320 0 111 2345555555655 6666666
Q ss_pred HHHHHhhhCCCCc-----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC--CC----chhHHHHHHHHhccccHHHHH
Q 006281 526 EVFNKSVNHDVML-----ARSILSTFMISLCRRGHFLVATKLLRGLSS-DL--GH----SDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 526 ~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~--~~----~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+.|++++...... ...++..+..+|.+.|++++|++.++++.. .+ .. ...+..++.++...|++++|+
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 6666655432110 133455666666666666666666665543 11 11 113334455555556666666
Q ss_pred HHHHHHHhcCCC
Q 006281 594 EHIKWIQESSPT 605 (652)
Q Consensus 594 ~~~~~~~~~~~~ 605 (652)
..++++. ..|.
T Consensus 216 ~~~~~al-~~p~ 226 (307)
T 2ifu_A 216 KCVRESY-SIPG 226 (307)
T ss_dssp HHHHHHT-TSTT
T ss_pred HHHHHHh-CCCC
Confidence 6666666 5554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-06 Score=82.63 Aligned_cols=222 Identities=13% Similarity=0.061 Sum_probs=157.0
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-ChhhHH
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE-D-LLRPAK 455 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~-g-~~~~a~ 455 (652)
+..++|+++++.+...++. +..+|+.--..+...| .+++++.+++.+.....+ +..+|+.-...+.+. + ++++++
T Consensus 68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence 4456788888888877655 6667777777777777 588999999988887655 667777776666666 6 788888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-------
Q 006281 456 KLWDQMFASGCSGNLKTYNILISKFSEVGEIE--------GALRLFHNMLEKGVAPDATTYTSLLEGLCQETN------- 520 (652)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------- 520 (652)
+.++.+.+.. +.|..+|+.-.-++.+.|.++ ++++.++++++..+. |...|+.....+.+.+.
T Consensus 146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 8888888765 667777776666666555555 888888888887555 77788888777777775
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHhhhC-------CCCc
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF--------------------LVATKLLRGLSSD-------LGHS 573 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~-------~~~~ 573 (652)
++++++.+++++..++. |...|..+-..+.+.|+. .+.......+... ..++
T Consensus 224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 302 (349)
T 3q7a_A 224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP 302 (349)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence 68888888888888877 888888777777776653 2333333333332 2333
Q ss_pred hhHHHHHHHHhccccHHHHHHHHHHHHh-cCCC
Q 006281 574 DSHVILLKSLADAREVEMAIEHIKWIQE-SSPT 605 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~ 605 (652)
-.+..++.+|...|+.++|.++++.+.+ .+|.
T Consensus 303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpi 335 (349)
T 3q7a_A 303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQM 335 (349)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChH
Confidence 4555778888888888888888888764 3443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.90 E-value=5.6e-09 Score=87.11 Aligned_cols=114 Identities=14% Similarity=0.004 Sum_probs=90.2
Q ss_pred HHHHHHHHCCCCC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-
Q 006281 491 RLFHNMLEKGVAP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS- 568 (652)
Q Consensus 491 ~~~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 568 (652)
..|+++... .| +...+..+...+...|++++|...|++++..++. +...+..+..++...|++++|++.++++..
T Consensus 8 ~~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 8 GTIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp CSHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555533 33 3456666777888889999999999888887775 777888888888889999999998888877
Q ss_pred CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 569 DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 569 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+|.++..+..++.++...|++++|++.++++.+..|+.+
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 123 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXP 123 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCG
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 777888888888888899999999999998888877653
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.89 E-value=1.6e-08 Score=84.02 Aligned_cols=107 Identities=8% Similarity=-0.065 Sum_probs=69.3
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+++++.++. +...+..+...+.+.|++++|++.|+++.. +|.++..|..++.++...|++++|++.++++.+.+|+.+
T Consensus 26 ~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~ 104 (151)
T 3gyz_A 26 KDINAIPDD-MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY 104 (151)
T ss_dssp GGGCCSCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCC
T ss_pred HHHhCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCc
Confidence 333443333 445566666666777777777777776665 566666666777777777777777777777777777665
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...++ ++.+|...|++++|.+.+++..+.
T Consensus 105 ~~~~~-lg~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 105 TPVFH-TGQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55444 667777777777777777766654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=3.6e-08 Score=88.30 Aligned_cols=128 Identities=9% Similarity=-0.116 Sum_probs=111.5
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...+...|++++|.+.|++++ .|+...+..++.++...|++++|++.++++.. +|..+..+..++.++..
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 45566778889999999999999874 45778999999999999999999999999877 77788899999999999
Q ss_pred cccHHHHHHHHHHHHhcCCCCc---------------HHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 586 AREVEMAIEHIKWIQESSPTML---------------QEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.|++++|++.++++.+..|... ...+..++.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999887654 2444459999999999999999999888764
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.3e-07 Score=86.07 Aligned_cols=198 Identities=10% Similarity=0.007 Sum_probs=144.0
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCChhhHHHHHHHHHHcCCCCC---------------
Q 006281 412 TSGRLREAYGVIQEMKRKGLDPDVSFYNSL-------MEACCREDLLRPAKKLWDQMFASGCSGN--------------- 469 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l-------l~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------- 469 (652)
..++...|.+.|.++.+.... ....|..+ ...+.+.++..+++..+..-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 578888999999988887433 45667666 4455555555555555554443 2221
Q ss_pred -------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc-cHH
Q 006281 470 -------LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML-ARS 541 (652)
Q Consensus 470 -------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~ 541 (652)
...+-.+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+......... ...
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2234456777888999999999999887643 544455556667889999999999998765543111 134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhhCCC----CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSSDLG----HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
++..+..++.+.|++++|++.+++....+. .++.....+.++.+.|+.++|...|+++...+|. ......|.+
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~--~~~~~aL~~ 249 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE--PKVAAALKD 249 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC--HHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--HHHHHHHhC
Confidence 788899999999999999999999876432 3346778999999999999999999999999998 555554543
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.1e-08 Score=92.36 Aligned_cols=199 Identities=12% Similarity=0.048 Sum_probs=123.1
Q ss_pred cCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCChh
Q 006281 378 RNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL---DP--DVSFYNSLMEACCREDLLR 452 (652)
Q Consensus 378 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p--~~~~~~~ll~~~~~~g~~~ 452 (652)
.++++.|...|... ...|...|++++|...|.+..+... .+ -..+|+.+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666555543 3455666777777777766554310 00 1235666777777778888
Q ss_pred hHHHHHHHHHHc----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC---C--CHhhHHHHHHHHHcCCCH
Q 006281 453 PAKKLWDQMFAS----GCSGN--LKTYNILISKFSEVGEIEGALRLFHNMLEKGVA---P--DATTYTSLLEGLCQETNL 521 (652)
Q Consensus 453 ~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~---p--~~~~~~~l~~~~~~~g~~ 521 (652)
+|...|++..+. | .+. ..++..+..+|.. |++++|+..|++.++.... + ...++..+...|...|++
T Consensus 94 ~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 171 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENG-TPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKF 171 (307)
T ss_dssp GGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCH
Confidence 888888776543 2 121 3567777778877 8888888888887643111 0 135677778888888888
Q ss_pred HHHHHHHHHhhhCCC----Ccc-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchh-----HHHHHHHHhccccHHH
Q 006281 522 QAAFEVFNKSVNHDV----MLA-RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDS-----HVILLKSLADAREVEM 591 (652)
Q Consensus 522 ~~a~~~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~ 591 (652)
++|++.|++++.... .+. ...+..++.++...|++++|...+++....|....+ ...++.++ ..|+.+.
T Consensus 172 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~~~~e~~~l~~l~~~~-~~~d~~~ 250 (307)
T 2ifu_A 172 DEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSEDCAALEDLLQAY-DEQDEEQ 250 (307)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTSTTSHHHHHHHHHHHHH-HTTCHHH
T ss_pred HHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHH-HhcCHHH
Confidence 888888888776321 111 225666667777788899998888887632322221 22344444 4566655
Q ss_pred HHH
Q 006281 592 AIE 594 (652)
Q Consensus 592 A~~ 594 (652)
+.+
T Consensus 251 ~~~ 253 (307)
T 2ifu_A 251 LLR 253 (307)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.9e-07 Score=86.86 Aligned_cols=225 Identities=9% Similarity=-0.011 Sum_probs=171.2
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C-C
Q 006281 409 FLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV-G-E 485 (652)
Q Consensus 409 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~ 485 (652)
.....+..++|++++++++..+.. +..+|+.--..+...| .++++++.++.+.... +.+..+|+.-..++... + +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~ 140 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQD 140 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSC
T ss_pred HHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCC
Confidence 334445567899999999988544 5666777777777788 5999999999999876 67888888887777776 7 8
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHH--------HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC--
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQ--------AAFEVFNKSVNHDVMLARSILSTFMISLCRRGH-- 555 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-- 555 (652)
+++++++++.+.+...+ |..+|+.-...+.+.|.++ ++++.++++++.++. |...|+....++.+.+.
T Consensus 141 ~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 141 PVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp CHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCC
T ss_pred hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccc
Confidence 99999999999987555 7778877666665555555 899999999999987 88899999888888876
Q ss_pred -----HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH--------------------HHHHHHHHHHHhcC-----C
Q 006281 556 -----FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV--------------------EMAIEHIKWIQESS-----P 604 (652)
Q Consensus 556 -----~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~ 604 (652)
++++++.++++.. +|.+.++|.-+...+.+.|+. .+..+...++.... .
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTP 298 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCC
T ss_pred cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccC
Confidence 7899999988776 888999998877777766653 22333333333222 0
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.........|+++|...|+.++|.++++.+.++
T Consensus 299 ~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 299 LPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 234566777999999999999999999998754
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.86 E-value=4.1e-08 Score=83.81 Aligned_cols=129 Identities=6% Similarity=-0.041 Sum_probs=76.2
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.+..+...+...|++++|...|++++...+. +..++..++.++...|++++|++.+++... .|..+..+..++.++..
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~ 93 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMA 93 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3444555556666666666666666555443 455566666666666666666666666555 45555566666666666
Q ss_pred cccHHHHHHHHHHHHhcCCCCcHHHH-HHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 586 AREVEMAIEHIKWIQESSPTMLQEIS-AELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 586 ~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.|++++|++.++++.+.+|....... ...+..+...|++++|.+.+++...
T Consensus 94 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 94 LGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 66666666666666666665533221 1133335556666666666665543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.85 E-value=5e-07 Score=85.41 Aligned_cols=160 Identities=6% Similarity=-0.039 Sum_probs=90.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcC-CCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFASG-CSGNL----KTYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSL 511 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l 511 (652)
+..+...|++++|.++++...+.. ..|+. ..+..+...+...|++++|+..|++..+.... ++ ..+++.+
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l 161 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI 161 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence 445566666666666666665531 11221 12333555555666777777777776653221 12 2246666
Q ss_pred HHHHHcCCCHHHHHHHHHHhhh------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh----C---CCCchhHHH
Q 006281 512 LEGLCQETNLQAAFEVFNKSVN------HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS----D---LGHSDSHVI 578 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~---~~~~~~~~~ 578 (652)
...|...|++++|...|+++++ ........++..++.+|.+.|++++|++.+++... . ......+..
T Consensus 162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 241 (293)
T 3u3w_A 162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ 241 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 6677777777777777776653 11111233566677777777777777777665543 1 111345556
Q ss_pred HHHHHhcccc-HHHHHHHHHHHHh
Q 006281 579 LLKSLADARE-VEMAIEHIKWIQE 601 (652)
Q Consensus 579 l~~~~~~~g~-~~~A~~~~~~~~~ 601 (652)
++.++.+.|+ +++|++.++++..
T Consensus 242 lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 242 RGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHH
Confidence 6667776673 5777777766654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.1e-08 Score=96.03 Aligned_cols=194 Identities=13% Similarity=-0.014 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|+..+++..+.... +...+..+..+
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~ 81 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC 81 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445555555666666666666666666543 335556666666666666666666666666654222 45556666666
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh-hCCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS-SDLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
+...|++++|...|+++++.++. +...+...+....+. .++........ ..+..+.....+... ..|++++|+
T Consensus 82 ~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~A~ 155 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKRWNSIEERRIHQESELHSYLTRL--IAAEREREL 155 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHHHHHHHHTCCCCCCHHHHHHHHH--HHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHH--HHHHHHHHH
Confidence 66666666666666666554321 100011111111111 11111111111 122333333333332 257777777
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhcC-CCCchHHHHHHHHHHc
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSSS-SYPEPILLLLHALQEK 637 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 637 (652)
+.++++.+.+|+.. .+...+...+... +.+++|.++|+++.+.
T Consensus 156 ~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 156 EECQRNHEGHEDDG-HIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp TTTSGGGTTTSCHH-HHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHhhhccccchh-hhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 77777777777653 3333344444444 5667777777765543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-06 Score=80.66 Aligned_cols=182 Identities=12% Similarity=0.048 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC-HHHHHHHH
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVG--EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN-LQAAFEVF 528 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~ 528 (652)
++++..++.+.... +.+..+|+.-.-++...+ .+++++.+++.+.+...+ |..+|+.-...+...|. ++++++.+
T Consensus 91 ~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 91 KAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 34444444444332 334444444433333333 244444444444443322 34444444444444444 34445555
Q ss_pred HHhhhCCCCccHHHHHHHHHHHHhc--------------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc-------
Q 006281 529 NKSVNHDVMLARSILSTFMISLCRR--------------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADA------- 586 (652)
Q Consensus 529 ~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~------- 586 (652)
+++++.++. |...|+.....+.+. +.++++++.+.++.. +|.+.++|.-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 544444444 444444444333332 234455555554443 445555554333333332
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCcHHHHHHHHH---HhhcCCCCchHHHHHHHHHHc
Q 006281 587 ----REVEMAIEHIKWIQESSPTMLQEISAELFA---SLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 587 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+.++++++.++++.+..|++.-. +-.++. .....|..+++.+.+.++.+.
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~-l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWC-LLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchH-HHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 34556666666666666655221 111221 112345555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=3.4e-07 Score=86.53 Aligned_cols=164 Identities=10% Similarity=0.010 Sum_probs=125.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHh----hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-cc----HHHH
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGV-APDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LA----RSIL 543 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~ 543 (652)
...+..+...|++++|..++++..+... .|+.. .+..+...+...|++++|...|++++..... .+ ..++
T Consensus 79 ~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 3u3w_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHH
Confidence 3346778899999999999999986422 22321 2334666777888999999999999884322 12 3368
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh----CCCC----chhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-----CcHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS----DLGH----SDSHVILLKSLADAREVEMAIEHIKWIQESSPT-----MLQEI 610 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~ 610 (652)
..++.+|...|++++|+..++++.. .+.. ...+..++.+|.+.|++++|++.++++.+..+. .....
T Consensus 159 ~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~ 238 (293)
T 3u3w_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999998863 1122 235678999999999999999999998875322 22556
Q ss_pred HHHHHHHhhcCCC-CchHHHHHHHHHHc
Q 006281 611 SAELFASLSSSSY-PEPILLLLHALQEK 637 (652)
Q Consensus 611 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~ 637 (652)
+..++.+|.+.|+ +++|.+.+++..+.
T Consensus 239 ~~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 239 YYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 6679999999996 59999999887654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.83 E-value=5.8e-08 Score=79.25 Aligned_cols=117 Identities=8% Similarity=0.010 Sum_probs=80.8
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 3456666667777777777777777777766554 566677777777777777777777777665 55566677777777
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCC
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSS 622 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (652)
+...|++++|++.++++.+.+|........ +..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~-l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADG-YQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHH-HHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHhc
Confidence 777788888888888877777766443333 665555444
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.6e-08 Score=76.91 Aligned_cols=110 Identities=11% Similarity=0.100 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+......|.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|+..|+++++.++. +...|..++.++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence 45666777778888888888888887765433 5677777778888888888888888888777765 667777788888
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
...|++++|++.++++.+ +|.+...+..+..+
T Consensus 92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 888888888888888776 66666666555543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.3e-08 Score=84.87 Aligned_cols=98 Identities=14% Similarity=0.044 Sum_probs=54.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
+...+..+...+...|++++|+..|++....... +...|..+..+|...|++++|+..|++++..++. ++..+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIX-EPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHH
Confidence 3344455555555566666666666655544222 4455555555555666666666666655555543 4445555555
Q ss_pred HHHhcCCHHHHHHHHHHhhh
Q 006281 549 SLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~ 568 (652)
+|...|++++|++.++++..
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 56666666666666655544
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=7.7e-08 Score=78.14 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=86.4
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|++.++++.. .|..+..+..++.++
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 445666667777777788888877777766554 566777777788888888888888877766 566667777888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
...|++++|+..++++.+..|.... .+..++.++...|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNET-YKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHH-HHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchH-HHHHHHHHHHHHhcC
Confidence 8888888888888888888877643 344477777766665
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.81 E-value=7.9e-07 Score=84.01 Aligned_cols=165 Identities=10% Similarity=-0.004 Sum_probs=103.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-----hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---cc--HH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA-----TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LA--RS 541 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~--~~ 541 (652)
.+...+..+...|++++|.+.+++..+....... ..+..+...+...|++++|...+++++..... +. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3444556666777777777777766654222111 12333445566777888888887777653211 11 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhh---h-CCCCc----hhHHHHHHHHhccccHHHHHHHHHHHHhcCCC-----CcH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLS---S-DLGHS----DSHVILLKSLADAREVEMAIEHIKWIQESSPT-----MLQ 608 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~ 608 (652)
++..++..|...|++++|+..++++. . .+... ..+..++.+|...|++++|++.++++.+..+. ...
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 67777778888888888888887765 2 22221 35667777888888888888888877654321 124
Q ss_pred HHHHHHHHHhhcCCCCchH-HHHHHHHHH
Q 006281 609 EISAELFASLSSSSYPEPI-LLLLHALQE 636 (652)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 636 (652)
..+..++.+|...|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 4555578888888888888 666766543
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=6e-06 Score=77.57 Aligned_cols=233 Identities=9% Similarity=0.033 Sum_probs=167.3
Q ss_pred HhcCChH-HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006281 376 CKRNKSD-ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGR----------LREAYGVIQEMKRKGLDPDVSFYNSLMEA 444 (652)
Q Consensus 376 ~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~~~~~~~~p~~~~~~~ll~~ 444 (652)
.+.|.++ +|+.+++.+...++. +..+|+.--..+...+. +++++.+++.+.....+ +..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 3445554 678888888776554 55556554444433332 67888888888887554 77778777777
Q ss_pred HHhcCC--hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcC---
Q 006281 445 CCREDL--LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQE--- 518 (652)
Q Consensus 445 ~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~--- 518 (652)
+.+.++ ++++++.++.+.+.. +-|..+|+.-.-++...|. ++++++.++.+++..+. |...|+.....+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence 777774 789999999998876 6788888888777778887 58999999999987655 777777766665544
Q ss_pred -----------CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhh-CCCCchh
Q 006281 519 -----------TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-----------GHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 519 -----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
+.++++++.+++++..++. |.+.|+.+-..+.+. +.++++++.++++.+ .|.+ .
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~--~ 272 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN--K 272 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC--H
T ss_pred cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc--c
Confidence 4578999999999998887 888888776666665 457899999999988 5544 3
Q ss_pred HHHHHHH-----HhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 576 HVILLKS-----LADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 576 ~~~l~~~-----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
|..+..+ ....|..++....+.++.+.+|.-. ..|..+..
T Consensus 273 w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~-~~y~d~~~ 317 (331)
T 3dss_A 273 WCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRA-AYLDDLRS 317 (331)
T ss_dssp HHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGH-HHHHHHHH
T ss_pred hHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchh-hHHHHHHH
Confidence 3322222 2246778899999999999999763 33443443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.4e-08 Score=81.80 Aligned_cols=102 Identities=9% Similarity=-0.069 Sum_probs=82.2
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+.+.|++++|...|++++..++. +...|..+..++.+.|++++|+..++++.. +|.++..+..++.++
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 345556667788888888888888888887765 777788888888888888888888888876 677778888888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...|++++|++.++++.+..|..+
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~ 120 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQP 120 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCG
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCc
Confidence 888888888888888888777553
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-07 Score=76.20 Aligned_cols=113 Identities=14% Similarity=0.133 Sum_probs=73.3
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|.+.|++++...+. +...+..++..+...|++++|..+++++.. .|.++..+..++.++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 345556666666667777777777666655443 455666667777777777777777776655 455566666777777
Q ss_pred hccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 584 ADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
...|++++|+..++++.+.+|........ ++.++.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~ 122 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQN-LGNAKQ 122 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHH
Confidence 77777777777777777777766433332 554443
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.79 E-value=8.4e-08 Score=87.36 Aligned_cols=188 Identities=8% Similarity=-0.047 Sum_probs=143.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNIL-------ISKFSEVGEIEGALRLFHNMLEKGVAPD--------------- 504 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------- 504 (652)
..++...|.+.|.++.+.. +-....|..+ ...+...++..+++..+++-.+ +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~ 94 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI 94 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence 5799999999999999885 5667788877 5666666666677666666553 2222
Q ss_pred -------HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCC---ch
Q 006281 505 -------ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGH---SD 574 (652)
Q Consensus 505 -------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~ 574 (652)
......+...+...|++++|.++|+.+...++. +. ....+...+.+.|++++|+..++.....+.. ..
T Consensus 95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~-~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSE-HL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCH-HH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-hH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 123345667788999999999999988776643 33 6666777899999999999999977664322 23
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcC--CCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESS--PTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
.+..++.++...|++++|+..|+++.... |..........+.++.+.|+.++|...|+++.....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 67899999999999999999999998543 442333333389999999999999999999988643
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.79 E-value=2.6e-07 Score=78.70 Aligned_cols=129 Identities=12% Similarity=0.086 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++++...+. +...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 45666777778888888888888888765322 5677778888888888888888888888877654 667788888888
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHH--HHHHHhccccHHHHHHHHHHHHh
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVI--LLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
...|++++|.+.++++.. .|.+...+.. .+..+...|++++|++.+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 888999999998888876 5666666643 44447778889999888877654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.78 E-value=4.9e-08 Score=94.14 Aligned_cols=150 Identities=13% Similarity=0.011 Sum_probs=78.6
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--------------ATTYTSLLEG 514 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~ 514 (652)
+++++|.+.|+...+.. +.+...+..+...|.+.|++++|+..|++.++...... ...|..+..+
T Consensus 127 ~~~~~A~~~~~~a~~~~-p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 205 (336)
T 1p5q_A 127 KSFEKAKESWEMNSEEK-LEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMC 205 (336)
T ss_dssp EEEECCCCGGGCCHHHH-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred eecccccchhcCCHHHH-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34444544444333221 22455666677777777777777777777765432211 2445555555
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHH-
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMA- 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A- 592 (652)
|.+.|++++|+..|+++++.++. +...+..+..+|...|++++|+..++++.+ +|.+...+..++.++...|++++|
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555554443 444555555555555555555555555544 444444555555555555555555
Q ss_pred HHHHHHHH
Q 006281 593 IEHIKWIQ 600 (652)
Q Consensus 593 ~~~~~~~~ 600 (652)
...++++.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 33444443
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.76 E-value=4e-08 Score=85.06 Aligned_cols=125 Identities=7% Similarity=0.091 Sum_probs=88.4
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH-HHhcCCH--H
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS-LCRRGHF--L 557 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 557 (652)
...|++++|...+++..+... .+...+..+...|...|++++|...|++++..++. +...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence 345677777777777766432 25667777777777778888888888877776654 56667777777 6677777 8
Q ss_pred HHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 558 VATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 558 ~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+|+..++++.. +|.++..+..++.++...|++++|+..++++.+..|...
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~ 149 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRI 149 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTS
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCc
Confidence 88888887766 566677777888888888888888888888888877653
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.75 E-value=2.5e-08 Score=86.39 Aligned_cols=122 Identities=7% Similarity=-0.008 Sum_probs=103.6
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH-HhccccH--H
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS-LADAREV--E 590 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~-~~~~g~~--~ 590 (652)
+...|++++|...+++.+..++. +...+..++.+|...|++++|+..++++.. .|.++..+..++.+ +...|++ +
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchH
Confidence 34578899999999999888775 778899999999999999999999999877 67778888899999 7889998 9
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHcc
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
+|+..++++.+.+|......+. ++.+|...|++++|.+.++++.+..
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~-la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALML-LASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCCCcHHHHHH-HHHHHHHcccHHHHHHHHHHHHhhC
Confidence 9999999999999988555444 9999999999999999999988763
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.75 E-value=7.9e-09 Score=91.42 Aligned_cols=130 Identities=10% Similarity=0.016 Sum_probs=84.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc---------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA---------------RSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
.+..+...+...|++++|...|++++...+... ..++..+..++.+.|++++|+..++++.. +|
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p 119 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK 119 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 444455555566666666666666555433211 25677788888888888888888888776 66
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHH-HHHHHHHHc
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPIL-LLLHALQEK 637 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 637 (652)
..+..+..++.++...|++++|++.++++.+.+|... ..+..+..++...|+.+++. ..++.+..+
T Consensus 120 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 120 NNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNL-DIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH-HHHHHHHHHHHHHHHHHC------------
T ss_pred ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7777888888888888888888888888888888774 44444777777777666666 444544443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.71 E-value=2e-07 Score=75.23 Aligned_cols=98 Identities=10% Similarity=0.012 Sum_probs=78.6
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+.+.|++++|...|+++++.++. +...+..+..++.+.|++++|++.++++.. +|..+..+..++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 345666777778888888888888888877765 677788888888888888888888888776 677777888888888
Q ss_pred hccccHHHHHHHHHHHHhcC
Q 006281 584 ADAREVEMAIEHIKWIQESS 603 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~ 603 (652)
...|++++|++.++++.+.+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 88888888888888888877
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.70 E-value=4.6e-07 Score=77.06 Aligned_cols=104 Identities=13% Similarity=-0.015 Sum_probs=85.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|++.|+++++.++. +...+..+..+|.+.|++++|++.++++.. +|.++..+..++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777777888888888888888888877765 677888888888888888888888888877 67777888888888
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCcH
Q 006281 583 LADAREVEMAIEHIKWIQESSPTMLQ 608 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~~ 608 (652)
+...|++++|++.++++.+.+|+...
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchH
Confidence 88889999999999998888887754
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-07 Score=74.63 Aligned_cols=118 Identities=8% Similarity=0.036 Sum_probs=75.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
.+...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|.+.++++++..+. +...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 34555666666666777777777777766654222 4556666666677777777777777776665544 556666677
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
.++.+.|++++|++.+++... .|.+...+..++.++...|
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhc
Confidence 777777777777777776655 4445555556666655444
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.1e-06 Score=81.12 Aligned_cols=163 Identities=6% Similarity=-0.059 Sum_probs=102.5
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HhhH
Q 006281 439 NSLMEACCREDLLRPAKKLWDQMFASGCSGN-----LKTYNILISKFSEVGEIEGALRLFHNMLEKGV---APD--ATTY 508 (652)
Q Consensus 439 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~---~p~--~~~~ 508 (652)
...+..+...|++++|.+.++...+...... ...+..+...+...|++++|+..+++..+... .+. ..++
T Consensus 79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 158 (293)
T 2qfc_A 79 KDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIE 158 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 3344555566666666666665555421110 11233345556677788888888777764321 111 3467
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhh---CCCC-c--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC---CC----Cchh
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVN---HDVM-L--ARSILSTFMISLCRRGHFLVATKLLRGLSSD---LG----HSDS 575 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~-~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~----~~~~ 575 (652)
+.+...|...|++++|...|++++. .... + ...++..++.+|...|++++|++.+++...- .. ....
T Consensus 159 ~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~ 238 (293)
T 2qfc_A 159 NAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQL 238 (293)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence 7777788888888888888887763 2111 1 1256777888888888888888888876431 11 1345
Q ss_pred HHHHHHHHhccccHHHH-HHHHHHHHh
Q 006281 576 HVILLKSLADAREVEMA-IEHIKWIQE 601 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A-~~~~~~~~~ 601 (652)
+..++.+|...|++++| ...++++..
T Consensus 239 ~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 239 YYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 67788888888888888 676777654
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.68 E-value=5e-07 Score=72.44 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|..+|++++...+. +...+..+..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence 34555566666666666666666666665422 24555666666666666666666666666655443 45556666666
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
+...|++++|.+.++++.. .|..+..+..++.++.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 6667777777776666655 4445555555555444
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-07 Score=77.69 Aligned_cols=96 Identities=11% Similarity=0.011 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+.+.|++++|...|++....... +...|..+..++...|++++|...|++++..++. ++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHH
Confidence 34444455555556666666666655544222 4455555555555666666666666655555544 444555555556
Q ss_pred HhcCCHHHHHHHHHHhhh
Q 006281 551 CRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~ 568 (652)
...|++++|++.++++..
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666555544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.67 E-value=4.2e-07 Score=87.55 Aligned_cols=121 Identities=10% Similarity=-0.025 Sum_probs=56.4
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CC
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--------------RSILSTFMISLCRRGHFLVATKLLRGLSS-DL 570 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~ 570 (652)
..+..+...|.+.|++++|...|++++...+... ..++..+..+|.+.|++++|++.++++.. +|
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p 227 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS 227 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 3444444444445555555555554444433311 24444444555555555555555554444 44
Q ss_pred CCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 571 GHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
.++..+..++.+|...|++++|+..++++.+.+|.... .+..+..++...|++++|
T Consensus 228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~-a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKA-AKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH-HHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHHHH
Confidence 44444445555555555555555555555555444422 222244444444444444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.1e-07 Score=86.01 Aligned_cols=194 Identities=7% Similarity=-0.063 Sum_probs=112.1
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILIS 478 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 478 (652)
+...+..+...+...|++++|+..|++..+.... +...|..+..++.+.|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456666777777777777777777777766322 56667777777777788888888777777664 456677777777
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
+|...|++++|...|++..+.... +...+...+....+ ...+..... ........+..+...+...+ .|++++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~~~~~~i~~~l~~l~--~~~~~~ 153 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKKRWNS-IEERRIHQESELHSYLTRLI--AAERER 153 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHHHHHH-HHHTCCCCCCHHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHHHHHH-HHHHHHhhhHHHHHHHHHHH--HHHHHH
Confidence 787888888888887777653210 00011111111111 111111111 22222333444444443322 577788
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHHHhcc-ccHHHHHHHHHHHHh
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKSLADA-REVEMAIEHIKWIQE 601 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 601 (652)
|++.++++.+ +|.+......+...+.+. +.+++|.+++.++.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8877777666 333333333444444444 567778888877665
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=5.5e-07 Score=71.37 Aligned_cols=102 Identities=9% Similarity=-0.009 Sum_probs=76.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...+..+...+...|++++|...|++++...+. +...+..++.++...|++++|...++++.. .|..+..+..++.++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445666677777778888888888777776654 566777777778888888888888877766 556667777888888
Q ss_pred hccccHHHHHHHHHHHHhcCCCCc
Q 006281 584 ADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 584 ~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
...|++++|.+.++++.+.+|...
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~ 106 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNP 106 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCH
Confidence 888888888888888888877764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=2e-07 Score=74.44 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=53.3
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccc
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAR 587 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g 587 (652)
..+...+.+.|++++|...|+++++.++. +...+..+..++...|++++|+..++++.. +|..+..+..++.++...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 33444555556666666666665555544 455555556666666666666666665554 4555555556666666666
Q ss_pred cHHHHHHHHHHHHhcCCC
Q 006281 588 EVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~~~ 605 (652)
++++|+..++++.+.+|.
T Consensus 100 ~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 100 NANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHhCcC
Confidence 666666666666555554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.65 E-value=2.9e-07 Score=81.53 Aligned_cols=157 Identities=10% Similarity=-0.048 Sum_probs=94.8
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHhhHHHHHHHHHcCCC
Q 006281 446 CREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEK----GVAP-DATTYTSLLEGLCQETN 520 (652)
Q Consensus 446 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~l~~~~~~~g~ 520 (652)
...|++++|.++++.+... ......++..+...|...|++++|...+++..+. +..| ...++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3567777777755544332 1234566777777777778888888777776641 1111 23456666667777777
Q ss_pred HHHHHHHHHHhhhC---CC-C--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCCch----hHHHHHHHHhccc
Q 006281 521 LQAAFEVFNKSVNH---DV-M--LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGHSD----SHVILLKSLADAR 587 (652)
Q Consensus 521 ~~~a~~~~~~~~~~---~~-~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~----~~~~l~~~~~~~g 587 (652)
+++|.+.+++++.. .. . .....+..+...+...|++++|.+.+++... ...++. .+..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777777776553 11 1 1234466677777777777777777776543 111211 2346667777777
Q ss_pred cHHHHHHHHHHHHhcC
Q 006281 588 EVEMAIEHIKWIQESS 603 (652)
Q Consensus 588 ~~~~A~~~~~~~~~~~ 603 (652)
++++|.+.++++.+..
T Consensus 162 ~~~~A~~~~~~al~~~ 177 (203)
T 3gw4_A 162 NLLEAQQHWLRARDIF 177 (203)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 7777777777776663
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.64 E-value=5.4e-07 Score=72.98 Aligned_cols=118 Identities=12% Similarity=0.099 Sum_probs=77.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 469 NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 469 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
+...+..+...+...|++++|...|++...... .+...+..+...+...|++++|.+.+++++...+. +...+..++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence 345566666666677777777777777665422 24556666666777777777777777776665544 4566666777
Q ss_pred HHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 549 SLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 549 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
++...|++++|.+.++++.. .|.++..+..++.++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence 77777777777777777655 55555666666666666554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.63 E-value=6.5e-07 Score=79.25 Aligned_cols=157 Identities=11% Similarity=-0.014 Sum_probs=85.2
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCC
Q 006281 411 CTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS----GC-SGNLKTYNILISKFSEVGE 485 (652)
Q Consensus 411 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~ 485 (652)
...|++++|.++++.+... ......++..+...+...|++++|...+++..+. +. +....++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3456677776644444321 1123455666666666677777777777666542 11 1223455666666667777
Q ss_pred HHHHHHHHHHHHHC----CCCC--CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC----C-CccHHHHHHHHHHHHhcC
Q 006281 486 IEGALRLFHNMLEK----GVAP--DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD----V-MLARSILSTFMISLCRRG 554 (652)
Q Consensus 486 ~~~A~~~~~~m~~~----~~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~~~~~~~~l~~~~~~~g 554 (652)
+++|...+++..+. +-.| ....+..+...+...|++++|...+++.+... . .....++..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776665532 1111 12345556666666677777777776655321 1 111223455666666677
Q ss_pred CHHHHHHHHHHhhh
Q 006281 555 HFLVATKLLRGLSS 568 (652)
Q Consensus 555 ~~~~A~~~~~~~~~ 568 (652)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777766666554
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=3.9e-07 Score=73.46 Aligned_cols=98 Identities=12% Similarity=-0.026 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
...+..++..+.+.|++++|++.+++... +|.++..+..++.++...|++++|+..++++.+.+|......++ ++.++
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-lg~~~ 82 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIR-KATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHH-HHHHH
Confidence 45678888999999999999999999877 78888899999999999999999999999999999998555444 99999
Q ss_pred hcCCCCchHHHHHHHHHHcc
Q 006281 619 SSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 619 ~~~g~~~~a~~~~~~~~~~g 638 (652)
...|++++|.+.+++..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhC
Confidence 99999999999999888764
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-07 Score=74.68 Aligned_cols=95 Identities=14% Similarity=0.061 Sum_probs=84.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
.+..++..+.+.|++++|+..++++.. +|.++..+..++.++...|++++|+..++++.+.+|+.....++ ++.+|..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~-la~~~~~ 97 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-LAVSHTN 97 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHH
Confidence 355677889999999999999999987 78889999999999999999999999999999999998655544 9999999
Q ss_pred CCCCchHHHHHHHHHHc
Q 006281 621 SSYPEPILLLLHALQEK 637 (652)
Q Consensus 621 ~g~~~~a~~~~~~~~~~ 637 (652)
.|++++|++.++++.+.
T Consensus 98 ~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 98 EHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 99999999999987764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.57 E-value=2.1e-06 Score=71.34 Aligned_cols=104 Identities=9% Similarity=0.027 Sum_probs=81.1
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc--cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVML--ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILL 580 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~ 580 (652)
+...+..+...+...|++++|.+.|+++++..+.. ....+..+..++...|++++|++.+++... .|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 45566777777778888888888888877765431 156677788888888888888888888766 566777788888
Q ss_pred HHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 581 KSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++...|++++|+..++++.+.+|...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 888888999999999998888888764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=4.2e-07 Score=73.25 Aligned_cols=99 Identities=6% Similarity=0.062 Sum_probs=66.7
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc-------hhHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS-------DSHV 577 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~-------~~~~ 577 (652)
..+..+...+.+.|++++|++.|+++++.++. +...|..+..+|.+.|++++|++.+++..+ .|... .++.
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 34555666777777777777777777776655 566677777777777777777777776644 22221 2455
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++.++...|++++|++.++++.+..|+
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~ 115 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD 115 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC
Confidence 6677777777888888888877776664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.56 E-value=5e-07 Score=70.84 Aligned_cols=95 Identities=11% Similarity=0.006 Sum_probs=56.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC--CcHHHHHHHHHHh
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT--MLQEISAELFASL 618 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~ 618 (652)
.+..++..+...|++++|...++++.. .+.....+..++.++...|++++|++.++++.+..|. .. ..+..++.++
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-~~~~~l~~~~ 86 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK-DVWAAKADAL 86 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-HHHHHHHHHH
Confidence 344555556666666666666666544 4445555566666666666666666666666666665 43 3333366666
Q ss_pred hcC-CCCchHHHHHHHHHHc
Q 006281 619 SSS-SYPEPILLLLHALQEK 637 (652)
Q Consensus 619 ~~~-g~~~~a~~~~~~~~~~ 637 (652)
... |++++|.+.+++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 87 RYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp TTCSSCSHHHHHHHHHHGGG
T ss_pred HHHhCCHHHHHHHHHHHhhc
Confidence 666 6666666666655443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.56 E-value=6.1e-07 Score=70.34 Aligned_cols=101 Identities=10% Similarity=-0.069 Sum_probs=76.2
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC--CchhHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG--HSDSHVILLK 581 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~--~~~~~~~l~~ 581 (652)
...+..+...+...|++++|...|+++++..+. +...+..+..++...|++++|.+.++++.+ .|. ....+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 345566667777778888888888877776654 566777778888888888888888887766 455 5667778888
Q ss_pred HHhcc-ccHHHHHHHHHHHHhcCCCC
Q 006281 582 SLADA-REVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 582 ~~~~~-g~~~~A~~~~~~~~~~~~~~ 606 (652)
++... |++++|++.++++....|..
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 88888 88888888888888877765
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.8e-07 Score=82.53 Aligned_cols=155 Identities=12% Similarity=0.012 Sum_probs=101.2
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HhhHH
Q 006281 445 CCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD---------------ATTYT 509 (652)
Q Consensus 445 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~---------------~~~~~ 509 (652)
....|+++.+.+.|+.-.... ......+..+...+...|++++|+..|++.++....-. ...+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNL 92 (198)
T ss_dssp --------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 334455555555554322210 12344566667777778888888888888776422111 26777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+..+|...|++++|+..+++++..++. +...+..+..++...|++++|++.++++.. +|.+...+..+..++...++
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 8888899999999999999998887765 677888899999999999999999998877 67777788888888887777
Q ss_pred HHHHH-HHHHHHHh
Q 006281 589 VEMAI-EHIKWIQE 601 (652)
Q Consensus 589 ~~~A~-~~~~~~~~ 601 (652)
.+++. ..+..+..
T Consensus 172 ~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 172 ARKKDKLTFGGMFD 185 (198)
T ss_dssp HHC-----------
T ss_pred HHHHHHHHHHHHhc
Confidence 77665 44444433
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.56 E-value=3.5e-07 Score=73.75 Aligned_cols=97 Identities=5% Similarity=-0.089 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc------HHHHHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML------QEISAE 613 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~ 613 (652)
..+..++..+.+.|++++|++.|+++.+ +|.++..+..++.+|...|++++|++.++++.+.+|... ...+..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 3577899999999999999999999887 888889999999999999999999999999998776542 235566
Q ss_pred HHHHhhcCCCCchHHHHHHHHHHc
Q 006281 614 LFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 614 l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.++...|++++|++.+++..+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 889999999999999999987764
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.55 E-value=3.5e-07 Score=77.66 Aligned_cols=109 Identities=11% Similarity=0.126 Sum_probs=83.4
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhC------------------CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNH------------------DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+......+.+.|++++|+..|++++.. ++ .+..+|..+..+|.+.|++++|+..++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDR-KNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHH-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH-HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 3444555555666666666666655543 11 1446788899999999999999999999877
Q ss_pred -CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Q 006281 569 -DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFA 616 (652)
Q Consensus 569 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 616 (652)
+|..+..+..++.++...|++++|+..++++.+.+|++...+...+..
T Consensus 92 ~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~ 140 (162)
T 3rkv_A 92 REETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKI 140 (162)
T ss_dssp HSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence 788889999999999999999999999999999999886454443433
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.55 E-value=5.2e-07 Score=73.97 Aligned_cols=101 Identities=10% Similarity=0.052 Sum_probs=73.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...+..+...+...|++++|...|++++..++. +...+..++.++...|++++|+..++++.. +|..+..+..++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 4566667777777777777777777777776654 566777777777777777777777777766 56666777777777
Q ss_pred HhccccHHHHHHHHHHHHhcCCC
Q 006281 583 LADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+...|++++|+..++++.+..|+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHChh
Confidence 77778888887777777776655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.54 E-value=7.3e-07 Score=75.81 Aligned_cols=99 Identities=12% Similarity=-0.085 Sum_probs=89.1
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..+...+.+.|++++|++.++++.. +|.++..+..++.+|...|++++|+..++++.+.+|......+ .++.+
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~-~lg~~ 88 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWS-RLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH-HHHHH
Confidence 566788899999999999999999999887 7778889999999999999999999999999999999855544 49999
Q ss_pred hhcCCCCchHHHHHHHHHHcc
Q 006281 618 LSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 618 ~~~~g~~~~a~~~~~~~~~~g 638 (652)
|...|++++|.+.+++..+..
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999887763
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=3.1e-06 Score=66.93 Aligned_cols=107 Identities=16% Similarity=0.080 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISL 550 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 550 (652)
..+..+...+...|++++|...|++....... +...+..+...+...|++++|...+++++..++. +...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence 34555555566666666666666666543221 4555555566666666666666666666555443 455566666666
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
...|++++|.+.+++... .|.++..+..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 666666666666666555 33343343333
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.2e-06 Score=71.65 Aligned_cols=100 Identities=8% Similarity=-0.140 Sum_probs=89.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..++..+...|++++|+..++++.. .|.++..+..++.++...|++++|+..++++.+.+|......+ .++.+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~-~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHF-FLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHH-HHHHH
Confidence 577889999999999999999999999877 7778889999999999999999999999999999999755444 49999
Q ss_pred hhcCCCCchHHHHHHHHHHccc
Q 006281 618 LSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 618 ~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
+...|++++|.+.++++.+...
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~~p 108 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSLAK 108 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHHCh
Confidence 9999999999999999887643
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.48 E-value=1.5e-06 Score=88.00 Aligned_cols=117 Identities=13% Similarity=0.108 Sum_probs=62.4
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV 558 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 558 (652)
.+.+.|++++|++.|++.++.... +...|..+..+|.+.|++++|.+.++++++.++. +...+..+..+|.+.|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence 344555666666666655544221 3555555555666666666666666666555544 45555556666666666666
Q ss_pred HHHHHHHhhh-CCCCchhHHHHHHH--HhccccHHHHHHHHH
Q 006281 559 ATKLLRGLSS-DLGHSDSHVILLKS--LADAREVEMAIEHIK 597 (652)
Q Consensus 559 A~~~~~~~~~-~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 597 (652)
|++.++++.+ .|.+...+..++.+ +.+.|++++|++.++
T Consensus 93 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666665544 44444455544444 555566666666655
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.5e-05 Score=82.09 Aligned_cols=172 Identities=9% Similarity=-0.021 Sum_probs=130.3
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGE----------IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET- 519 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g- 519 (652)
.++|++.++.+.+.+ +-+..+|+.--.++...|+ ++++++.++.+.+...+ +..+|..-...+.+.|
T Consensus 45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~ 122 (567)
T 1dce_A 45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE 122 (567)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence 356677777777664 4455666665555555555 78888888888876555 6777877777777888
Q ss_pred -CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC-CHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcc----------
Q 006281 520 -NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG-HFLVATKLLRGLSS-DLGHSDSHVILLKSLADA---------- 586 (652)
Q Consensus 520 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~---------- 586 (652)
+++++++.++++++.++. +...|..-..++.+.| .++++++.++++.+ +|.+..+|...+.++.+.
T Consensus 123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888888877 7778888888888888 78888888888776 677778888766666542
Q ss_pred ----ccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCch
Q 006281 587 ----REVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEP 626 (652)
Q Consensus 587 ----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (652)
+.++++++.++++...+|++. ..|..+...+.+.|+.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~-saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQ-SAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCS-HHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCc-cHHHHHHHHHhcCCCccc
Confidence 678999999999999999885 555558888888887655
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.43 E-value=9e-07 Score=89.23 Aligned_cols=143 Identities=10% Similarity=0.006 Sum_probs=94.1
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--------------HhhHHHHHHH
Q 006281 449 DLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD--------------ATTYTSLLEG 514 (652)
Q Consensus 449 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~--------------~~~~~~l~~~ 514 (652)
+++++|.+.|+...+.. +.....|..+...|.+.|++++|+..|++.++...... ...|..+..+
T Consensus 248 ~~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~ 326 (457)
T 1kt0_A 248 KSFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326 (457)
T ss_dssp EEEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHH
Confidence 34555555554433321 23456777788888888888888888888886422211 4566677777
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
|.+.|++++|+..|+++++.++. +...+..+..+|...|++++|+..|+++.+ +|.+...+..++.++...|++++|.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777776655 566677777777777777777777777766 5556667777777777777766654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.43 E-value=4.4e-06 Score=67.44 Aligned_cols=98 Identities=14% Similarity=0.018 Sum_probs=74.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccH---HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC---chhHHHHHH
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLAR---SILSTFMISLCRRGHFLVATKLLRGLSS-DLGH---SDSHVILLK 581 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~---~~~~~~l~~ 581 (652)
..+...+...|++++|...|++++...+. +. ..+..++.++.+.|++++|+..++++.. .|.+ +..+..++.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 34556677788888888888887776544 22 5677778888888888888888888766 4555 556778888
Q ss_pred HHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 582 SLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
++...|++++|+..++++.+..|+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 88888888888888888888888764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.42 E-value=8.3e-06 Score=67.60 Aligned_cols=113 Identities=14% Similarity=0.026 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSIL 543 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 543 (652)
.+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++++...+. +...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHH
Confidence 35566777777777888888888888887754 444 566777777788888888888888887776654 56677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 544 STFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 544 ~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
..+..++...|++++|.+.+++... .|.+...+..+..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7788888888888888888887766 555555555444443
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.8e-06 Score=81.46 Aligned_cols=164 Identities=12% Similarity=0.034 Sum_probs=92.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHh----hHHHHHHHHHcCCCHHHHHHHHHHhhhC----C-CCccHHH
Q 006281 473 YNILISKFSEVGEIEGALRLFHNMLEKG-VAPDAT----TYTSLLEGLCQETNLQAAFEVFNKSVNH----D-VMLARSI 542 (652)
Q Consensus 473 ~~~l~~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~ 542 (652)
+..+...|...|++++|.+.+..+...- ..++.. ..+.+...+...|+++.|..++++.+.. + ......+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 4556666666666666666666654320 011111 1222222333456677777777665431 1 1123455
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhhC-------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcC---CCC---cHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSSD-------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESS---PTM---LQE 609 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~---~~~ 609 (652)
+..++..+...|++++|..+++++... +.....+..++..|...|++++|...++++.... +.+ ...
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 666777777777777777777765431 1112355567777777777777777777766532 111 133
Q ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 610 ISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 610 ~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
++..++..+...|++++|...+.+..+
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 445566666777777777777665544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.40 E-value=6.8e-07 Score=70.90 Aligned_cols=92 Identities=12% Similarity=0.010 Sum_probs=71.6
Q ss_pred cCCCHHHHHHHHHHhhhCCC--CccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDV--MLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
..|++++|+..|+++++.+. +-+...+..+..+|...|++++|++.++++.+ .|.++..+..++.++...|++++|+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 35778888888888888741 12556788888889999999999999998877 6777888888999999999999999
Q ss_pred HHHHHHHhcCCCCcH
Q 006281 594 EHIKWIQESSPTMLQ 608 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~ 608 (652)
+.++++.+..|.++.
T Consensus 82 ~~~~~al~~~p~~~~ 96 (117)
T 3k9i_A 82 ELLLKIIAETSDDET 96 (117)
T ss_dssp HHHHHHHHHHCCCHH
T ss_pred HHHHHHHHhCCCcHH
Confidence 999999888887743
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.40 E-value=5.4e-07 Score=91.22 Aligned_cols=121 Identities=7% Similarity=-0.036 Sum_probs=101.5
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+...+.+.|++++|.+.|+++++..+. +...+..+..+|.+.|++++|++.++++.+ +|..+..+..++.+|...|+
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 3444567889999999999999998776 688999999999999999999999999988 67788899999999999999
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHH--hhcCCCCchHHHHHH
Q 006281 589 VEMAIEHIKWIQESSPTMLQEISAELFAS--LSSSSYPEPILLLLH 632 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 632 (652)
+++|++.++++.+.+|+......+ +..+ +.+.|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~p~~~~~~~~-l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPHDKDAKMK-YQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTTCTTHHHH-HHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999987544443 6666 788899999999887
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.1e-06 Score=69.41 Aligned_cols=99 Identities=10% Similarity=0.082 Sum_probs=63.3
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCC-------chhHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGH-------SDSHV 577 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-------~~~~~ 577 (652)
..+..+...+...|++++|...|++++...+. +...+..++.++...|++++|...++++.. .+.. +..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 34555556666666666666666666665543 455666666666677777777776666544 2222 44566
Q ss_pred HHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 578 ILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 578 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++.++...|++++|++.++++.+..|+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 6777777777777777777777777663
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=84.62 Aligned_cols=90 Identities=16% Similarity=0.044 Sum_probs=70.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+..+|..+..+|.+.|++++|++.++++.+ +|..+..+..++.+|...|++++|++.++++.+.+|... .+...+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~-~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDK-AIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHH
Confidence 456788888888889999999999888877 666777888888999999999999999999999888774 444447777
Q ss_pred hhcCCCCchHHH
Q 006281 618 LSSSSYPEPILL 629 (652)
Q Consensus 618 ~~~~g~~~~a~~ 629 (652)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 766666665543
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.39 E-value=3.5e-06 Score=68.05 Aligned_cols=95 Identities=13% Similarity=0.063 Sum_probs=81.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---cHHHHHHHH
Q 006281 543 LSTFMISLCRRGHFLVATKLLRGLSS-DLGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTM---LQEISAELF 615 (652)
Q Consensus 543 ~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~ 615 (652)
+..++..+...|++++|.+.++++.. .|.++ ..+..++.++...|++++|+..++++.+..|+. ....+. ++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~-la 83 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLK-LG 83 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHH-HH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHH-HH
Confidence 34567788999999999999999877 56555 588899999999999999999999999999987 344444 99
Q ss_pred HHhhcCCCCchHHHHHHHHHHcc
Q 006281 616 ASLSSSSYPEPILLLLHALQEKC 638 (652)
Q Consensus 616 ~~~~~~g~~~~a~~~~~~~~~~g 638 (652)
.++...|++++|.+.++++.+..
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC
Confidence 99999999999999999988763
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.33 E-value=3.7e-06 Score=67.96 Aligned_cols=109 Identities=10% Similarity=0.011 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC--cc----HHHHH
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM--LA----RSILS 544 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~----~~~~~ 544 (652)
..+..+...+...|++++|...|++..+... .+...+..+...+...|++++|...+++++...+. ++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 3445555555566666666666666554321 24455555555666666666666666655554321 11 44556
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHH
Q 006281 545 TFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILL 580 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 580 (652)
.++.++...|++++|.+.++++....+++.....+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~ 119 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 666666666666666666666655333443333333
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.33 E-value=1.2e-06 Score=84.44 Aligned_cols=149 Identities=9% Similarity=-0.017 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHH
Q 006281 470 LKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMIS 549 (652)
Q Consensus 470 ~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 549 (652)
...+..+...+.+.|++++|...|++.+.. .|+... +...|+.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456677777788888888888888887754 333321 223344444443332 1367888899
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH-hhcCCCCchH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS-LSSSSYPEPI 627 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a 627 (652)
|.+.|++++|+..++++.. +|.+...+..++.+|...|++++|+..++++.+.+|.+... +..+..+ ....+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a-~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAI-RRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 9999999999999998877 77788889999999999999999999999999998887443 3336655 3456777888
Q ss_pred HHHHHHHHHcc
Q 006281 628 LLLLHALQEKC 638 (652)
Q Consensus 628 ~~~~~~~~~~g 638 (652)
.+.+++|....
T Consensus 319 ~~~~~~~l~~~ 329 (338)
T 2if4_A 319 KEMYKGIFKGK 329 (338)
T ss_dssp -----------
T ss_pred HHHHHHhhCCC
Confidence 88888877653
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.9e-06 Score=83.03 Aligned_cols=153 Identities=12% Similarity=-0.017 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEG 514 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~ 514 (652)
...+..+...+.+.|++++|...|++..+. .|+... +...|+.+++...+. ...|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 456777888888999999999999998875 344332 233444444443321 1367888889
Q ss_pred HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH-hccccHHHH
Q 006281 515 LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL-ADAREVEMA 592 (652)
Q Consensus 515 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~-~~~g~~~~A 592 (652)
|.+.|++++|+..++++++.++. +...+..+..+|...|++++|++.++++.. +|.+...+..+..+. ...+..+++
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988765 778899999999999999999999999877 666677777777663 456678888
Q ss_pred HHHHHHHHhcCCCCc
Q 006281 593 IEHIKWIQESSPTML 607 (652)
Q Consensus 593 ~~~~~~~~~~~~~~~ 607 (652)
...++++....|.+.
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999998888764
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.27 E-value=2.3e-06 Score=72.25 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVA-PD----ATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~-p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
++..+...|...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++++
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4455555555566666666665555432100 01 1234444444555555555555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.27 E-value=1.1e-05 Score=81.38 Aligned_cols=129 Identities=9% Similarity=0.018 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGN---------------LKTYNILISKFSEVGEIEGALRLFHNMLEK 499 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 499 (652)
...|..+...+.+.|++++|...|++..+.. +.+ ...|..+..+|.+.|++++|+..+++.++.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 4456667777777777777777777777652 222 467777777777777777777777777765
Q ss_pred CCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH-HHHHh
Q 006281 500 GVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK-LLRGL 566 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~-~~~~~ 566 (652)
... +...|..+..+|...|++++|...|+++++.++. +...+..+..++.+.|+.+++.+ .+.+|
T Consensus 347 ~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a~~~~~~~~ 412 (457)
T 1kt0_A 347 DSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNERDRRIYANM 412 (457)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332 5667777777777777777777777777776654 55567777777777777766653 34444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=7.8e-05 Score=76.80 Aligned_cols=173 Identities=10% Similarity=0.017 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006281 415 RLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDL----------LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVG 484 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 484 (652)
..++|++.++++...+.. +...|+.--.++...|+ ++++.+.++.+.+.. +.+..+|+.-.-++.+.+
T Consensus 44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 346778888888877443 45556665556666666 888899999888876 677888888888888888
Q ss_pred --CHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc--------
Q 006281 485 --EIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-------- 553 (652)
Q Consensus 485 --~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 553 (652)
+++++++.++++.+...+ +..+|+.-...+.+.| .++++++.++++++.++. +...|.....++.+.
T Consensus 122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 679999999999987655 7888888888888888 899999999999998887 888888888777763
Q ss_pred ------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHH
Q 006281 554 ------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEM 591 (652)
Q Consensus 554 ------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 591 (652)
+.++++++.++++.. +|.+..+|.-+.+.+.+.++.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557899999988877 88899999999999888776443
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.25 E-value=7.5e-06 Score=67.04 Aligned_cols=100 Identities=9% Similarity=-0.088 Sum_probs=54.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCc------c-----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-------
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVML------A-----RSILSTFMISLCRRGHFLVATKLLRGLSS------- 568 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 568 (652)
.+......+.+.|++++|+..|+++++..+.. + ...|..+..++.+.|++++|+..+++..+
T Consensus 13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 34455555666677777777777666655431 1 12455555555555555555555555432
Q ss_pred -CCCCchhH----HHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 569 -DLGHSDSH----VILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 569 -~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+|.....| ...+.++...|++++|++.|+++.+..|+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d 135 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 135 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 23333444 555555555555555555555555555544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=4.9e-06 Score=68.15 Aligned_cols=94 Identities=14% Similarity=0.052 Sum_probs=45.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----hhHHHHHHHHHcCCCHHHHHHHHHHhhhC-------C
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAP------DA-----TTYTSLLEGLCQETNLQAAFEVFNKSVNH-------D 535 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 535 (652)
......+.+.|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..++++++. +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 334444455555555555555555431110 11 14555555555555555555555555554 3
Q ss_pred CCccHHHH----HHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 536 VMLARSIL----STFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 536 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+. +...| .....++...|++++|+..|++..+
T Consensus 95 pd-~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QD-EGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp ST-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred Cc-hHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33 33344 4555555555555555555555544
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-05 Score=77.88 Aligned_cols=90 Identities=10% Similarity=-0.037 Sum_probs=71.7
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHH
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKS 582 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~ 582 (652)
+...|..+..+|.+.|++++|++.++++++.++. +...+..+..+|...|++++|++.++++.+ +|.+...+..+..+
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~ 350 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKV 350 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456777888888888899999988888887765 677888888888889999999988888876 66677777778888
Q ss_pred HhccccHHHHHH
Q 006281 583 LADAREVEMAIE 594 (652)
Q Consensus 583 ~~~~g~~~~A~~ 594 (652)
+...++.+++.+
T Consensus 351 ~~~~~~~~~a~k 362 (370)
T 1ihg_A 351 KQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777776654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.21 E-value=0.0001 Score=73.87 Aligned_cols=197 Identities=11% Similarity=0.006 Sum_probs=122.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCH----------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC
Q 006281 372 SKNLCKRNKSDELVEVYKVLSANDYFTDM----------------ESYNVMVSFLCTSGRLREAYGVIQEMKRKGL-DPD 434 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~-~p~ 434 (652)
...+.+.|++++|.+.|..+.+....... ..+..++..|...|++++|.+.+..+...-. .++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34567788888888888888776433111 1366777888888888888888877654311 112
Q ss_pred HH----HHHHHHHHHHhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC--
Q 006281 435 VS----FYNSLMEACCREDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK--GV-- 501 (652)
Q Consensus 435 ~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~--~~-- 501 (652)
.. +.+.+-..+...|+.+.+.++++..... +..+ -..++..+...|...|++++|..++++.... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 11 2222333334557778888877766542 2122 2456677777788888888888887776542 11
Q ss_pred CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC---CCc-c--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 502 AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNHD---VML-A--RSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 502 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
++ ....+..++..|...|++++|..++++++... ..| . ..++..++..+...|++++|...+.+...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11 13456677777778888888888887765421 111 1 23455566666677778888777776655
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=1.5e-06 Score=70.96 Aligned_cols=90 Identities=7% Similarity=0.012 Sum_probs=73.0
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----------FLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
+.+.+++|.+.+++.++.++. +...|..+..++...|+ +++|+..|+++.+ +|....+|..++.+|..
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 345677788888888777776 77777777777777665 4589999998877 88888899999999987
Q ss_pred cc-----------cHHHHHHHHHHHHhcCCCCc
Q 006281 586 AR-----------EVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 586 ~g-----------~~~~A~~~~~~~~~~~~~~~ 607 (652)
.| ++++|++.|+++.+.+|+..
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 64 89999999999999999873
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.17 E-value=6.9e-06 Score=69.29 Aligned_cols=130 Identities=12% Similarity=-0.008 Sum_probs=61.3
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-----ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh---CCCC----ch
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-----LARSILSTFMISLCRRGHFLVATKLLRGLSS---DLGH----SD 574 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~----~~ 574 (652)
++..+...+...|++++|...+++++..... ....++..+...+...|++++|.+.+++... ...+ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4444555555555555555555554432111 0012344555555555555555555555432 1111 12
Q ss_pred hHHHHHHHHhccccHHHHHHHHHHHHhcCC-----CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 575 SHVILLKSLADAREVEMAIEHIKWIQESSP-----TMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 575 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
.+..++.++...|++++|++.++++.+..+ ......+..++..+...|++++|.+.+++..+
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 333455555555555555555555543311 11122333455555556666666665555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.2e-06 Score=69.41 Aligned_cols=85 Identities=12% Similarity=-0.098 Sum_probs=71.0
Q ss_pred hcCCHHHHHHHHHHhhhC----CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchH
Q 006281 552 RRGHFLVATKLLRGLSSD----LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPI 627 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 627 (652)
..|++++|+..++++... |..+..+..++.++...|++++|++.++++.+.+|+.....++ ++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~-l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVF-YAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHH-HHHHHHHcCCHHHH
Confidence 468899999999998875 5556678899999999999999999999999999998555554 99999999999999
Q ss_pred HHHHHHHHHc
Q 006281 628 LLLLHALQEK 637 (652)
Q Consensus 628 ~~~~~~~~~~ 637 (652)
.+.+++..+.
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988775
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.16 E-value=1.2e-05 Score=67.90 Aligned_cols=101 Identities=10% Similarity=0.028 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEK--------GV--------AP-DATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.+......+.+.|++++|+..|++.++. .. .| +...|..+..+|.+.|++++|+..+++++..
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 3444455555555555555555555432 00 11 2346677777777888888888888888777
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
++. +...|..++.+|...|++++|++.+++... +|.++
T Consensus 93 ~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 665 667777788888888888888888887766 44444
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.9e-06 Score=67.42 Aligned_cols=93 Identities=12% Similarity=-0.061 Sum_probs=70.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC------cHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM------LQEIS 611 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~ 611 (652)
+...+..+...+...|++++|++.++++.. .|.++..+..++.++...|++++|++.++++.+.+|+. ....+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 455677778888888888888888888766 66677788888888888888888888888888888876 33333
Q ss_pred HHHHHHhhcCCCCchHHHHHH
Q 006281 612 AELFASLSSSSYPEPILLLLH 632 (652)
Q Consensus 612 ~~l~~~~~~~g~~~~a~~~~~ 632 (652)
.++.++...|+++.|.+.++
T Consensus 83 -~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 -RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp -HHHHHHHHHHCCCCCSSSSS
T ss_pred -HHHHHHHHHHhHhhhHhHHH
Confidence 37777777777777655444
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.5e-05 Score=79.98 Aligned_cols=88 Identities=16% Similarity=0.065 Sum_probs=42.7
Q ss_pred HHHhcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhC-----CCC-c-cHHHHH
Q 006281 479 KFSEVGEIEGALRLFHNMLEK---GVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNH-----DVM-L-ARSILS 544 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~ 544 (652)
.+..+|++++|+.++++.++. -+-|+ ..+++.|...|...|++++|..+++++++. |.. | ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344556666666666555431 11111 234555555555566666666655554431 111 1 122355
Q ss_pred HHHHHHHhcCCHHHHHHHHHHh
Q 006281 545 TFMISLCRRGHFLVATKLLRGL 566 (652)
Q Consensus 545 ~l~~~~~~~g~~~~A~~~~~~~ 566 (652)
.|+..|...|++++|+.+++++
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555555555555555544
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.04 E-value=3e-05 Score=57.76 Aligned_cols=81 Identities=12% Similarity=0.083 Sum_probs=59.8
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
+...+..+...+...|++++|++.+++... .|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~-~~~l~~~ 86 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA-KQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHH-HHHHHHH
Confidence 345667777778888888888888887766 56667777788888888888888888888888888876443 3336665
Q ss_pred hhc
Q 006281 618 LSS 620 (652)
Q Consensus 618 ~~~ 620 (652)
+..
T Consensus 87 ~~~ 89 (91)
T 1na3_A 87 KQK 89 (91)
T ss_dssp HHH
T ss_pred HHh
Confidence 544
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=4.8e-06 Score=65.06 Aligned_cols=62 Identities=10% Similarity=0.082 Sum_probs=32.1
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+..+...+...|++++|.+.|+++++..+. +...+..+..++.+.|++++|++.++++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34444445555555555555555555554443 444455555555555555555555555544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.91 E-value=5e-05 Score=59.62 Aligned_cols=82 Identities=16% Similarity=0.002 Sum_probs=63.3
Q ss_pred HHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 523 AAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 523 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
+|++.|+++++.++. +...+..++.++...|++++|++.++++.. +|.....+..++.++...|++++|+..++++.+
T Consensus 3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466777777776665 667777888888888888888888888766 666677778888888888888888888888877
Q ss_pred cCCC
Q 006281 602 SSPT 605 (652)
Q Consensus 602 ~~~~ 605 (652)
..|.
T Consensus 82 ~~~~ 85 (115)
T 2kat_A 82 AAQS 85 (115)
T ss_dssp HHHH
T ss_pred hccc
Confidence 6553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=0.00026 Score=57.60 Aligned_cols=111 Identities=11% Similarity=0.018 Sum_probs=66.8
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A 559 (652)
+++++|++.|++..+.|. |+.. +...|...+.+++|.+.|++..+.+ ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 345666666666666552 2222 4455555556666666666666653 34455556666665 5666677
Q ss_pred HHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcC
Q 006281 560 TKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESS 603 (652)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 603 (652)
++++++..+. .++.++..|+..|.. .++.++|++.++++.+.+
T Consensus 81 ~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcC-CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 7666666553 455666666666666 666777777776666654
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.9e-05 Score=60.99 Aligned_cols=79 Identities=14% Similarity=0.046 Sum_probs=68.9
Q ss_pred HHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 558 VATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 558 ~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
+|++.++++.. +|.++..+..++.++...|++++|+..++++.+.+|..... +..++.+|...|++++|.+.+++..+
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVA-WKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 56777887766 67788889999999999999999999999999999988554 44599999999999999999998876
Q ss_pred c
Q 006281 637 K 637 (652)
Q Consensus 637 ~ 637 (652)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 5
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=2.2e-05 Score=64.07 Aligned_cols=86 Identities=9% Similarity=-0.052 Sum_probs=74.5
Q ss_pred HhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 551 CRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV----------EMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+.+.+++|++.+++..+ +|.++..|..++.++...|++ ++|+..|+++.+.+|+.....++ ++.+|.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~-LG~ay~ 91 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWC-IGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHH-HHHHHH
Confidence 456779999999999887 888999999999999888764 69999999999999998665555 999998
Q ss_pred cCC-----------CCchHHHHHHHHHHc
Q 006281 620 SSS-----------YPEPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g-----------~~~~a~~~~~~~~~~ 637 (652)
..| ++++|++.|+++.+.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 774 899999999988876
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=58.10 Aligned_cols=114 Identities=7% Similarity=-0.053 Sum_probs=94.2
Q ss_pred CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAI 593 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 593 (652)
.+++++|.+.|++..+.+.. ... +...|...+..++|++++++..+. .++.++..++..|.. .+++++|+
T Consensus 8 ~~d~~~A~~~~~~aa~~g~~-~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELNEM-FGC----LSLVSNSQINKQKLFQYLSKACEL-NSGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCT-THH----HHHHTCTTSCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred ccCHHHHHHHHHHHHcCCCH-hhh----HHHHHHcCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 35789999999999988843 322 777888888899999999998774 678889999999988 89999999
Q ss_pred HHHHHHHhcCCCCcHHHHHHHHHHhhc----CCCCchHHHHHHHHHHcccc
Q 006281 594 EHIKWIQESSPTMLQEISAELFASLSS----SSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~ 640 (652)
+.++++.+.+ .... +..|+..|.. .+++++|.+.+++..+.|..
T Consensus 82 ~~~~~Aa~~g--~~~a-~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 82 QYYSKACGLN--DQDG-CLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHTT--CHHH-HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCC--CHHH-HHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 9999999874 3334 4449999988 89999999999999888653
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00016 Score=53.56 Aligned_cols=79 Identities=11% Similarity=0.150 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+..+...+...|++++|...|++++...+. +...+..+..++.+.|++++|.+.++++.. +|.++..+..++.++.
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 34445555555666666666666665555443 445555666666666666666666666554 4445555555555544
Q ss_pred c
Q 006281 585 D 585 (652)
Q Consensus 585 ~ 585 (652)
.
T Consensus 89 ~ 89 (91)
T 1na3_A 89 K 89 (91)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.78 E-value=6.7e-05 Score=57.10 Aligned_cols=66 Identities=14% Similarity=-0.040 Sum_probs=56.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+...+..+..+|...|++++|++.++++.+ +|..+..+..++.+|...|++++|++.++++.+..|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 567788888999999999999999998877 777888888999999999999999999998887654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00014 Score=73.04 Aligned_cols=125 Identities=11% Similarity=0.066 Sum_probs=71.8
Q ss_pred HHHhcCChhhHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCC-HhhHH
Q 006281 444 ACCREDLLRPAKKLWDQMFAS-----G-CSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK-----GV-APD-ATTYT 509 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~-----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~-----~~-~p~-~~~~~ 509 (652)
.+...|++++|+.++++..+. | -.| ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 445667777777777666543 1 011 2456677777777777777777777766531 21 111 23566
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhh-----CCCC--ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVN-----HDVM--LARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.|...|...|++++|..+++++++ .|.. ....+...+..++...|.+++|+.++.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677777777777777777776643 2221 1122344455555555666666666655543
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.2e-05 Score=56.45 Aligned_cols=64 Identities=13% Similarity=0.086 Sum_probs=48.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCch-hHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSD-SHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.+..+.+.|++++|++.++++.+ +|.++. .+..++.++...|++++|++.++++.+.+|+....
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 45566777888888888887766 566666 77778888888888888888888888888777543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0002 Score=54.37 Aligned_cols=64 Identities=16% Similarity=-0.016 Sum_probs=43.3
Q ss_pred CHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 504 DATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
+...+..+...|...|++++|+..|+++++.++. +...|..+..+|...|++++|++.+++...
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666777777777777777777766654 555666677777777777777777766544
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00015 Score=54.98 Aligned_cols=86 Identities=6% Similarity=0.044 Sum_probs=55.0
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHH-HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARS-ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
....+...|++++|.+.|+++++.++. +.. .+..+..++...|++++|++.++++.. +|..+..+.. +.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~ 76 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KM 76 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HH
Confidence 344566677777777777777776654 555 677777777777777777777777766 4444444321 55
Q ss_pred HHHHHHHHHHHHhcCCC
Q 006281 589 VEMAIEHIKWIQESSPT 605 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~ 605 (652)
+.++...+++....+|+
T Consensus 77 ~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 77 VMDILNFYNKDMYNQLE 93 (99)
T ss_dssp HHHHHHHHCCTTHHHHC
T ss_pred HHHHHHHHHHHhccCcc
Confidence 56666666655554443
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00029 Score=52.24 Aligned_cols=68 Identities=10% Similarity=0.007 Sum_probs=55.4
Q ss_pred ccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 538 LARSILSTFMISLCRRGH---FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
.++..+..+..++...++ .++|..++++... +|.++.+...++..+.+.|++++|+..|+++.+.+|.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 366777888888765444 6888888888877 8888888888888888899999999999998888877
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.00094 Score=49.48 Aligned_cols=66 Identities=8% Similarity=-0.111 Sum_probs=30.7
Q ss_pred CCchhHHHHHHHHhcccc---HHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 571 GHSDSHVILLKSLADARE---VEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 571 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.++..+..++.++...++ .++|..+++++++.+|++....+. ++..+...|++++|...|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~-lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSL-IANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344444444444432222 345555555555555554333333 444455555555555555554444
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0025 Score=60.03 Aligned_cols=70 Identities=11% Similarity=-0.161 Sum_probs=59.7
Q ss_pred ccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 538 LARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 538 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
.++.++..+...+...|++++|.+.++++..-.++...+..++..+.-.|++++|++.++++...+|..+
T Consensus 275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~ 344 (372)
T 3ly7_A 275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344 (372)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence 3677888888777778999999999999988435566777889999999999999999999999999874
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0022 Score=60.39 Aligned_cols=70 Identities=9% Similarity=-0.232 Sum_probs=58.6
Q ss_pred hhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 566 LSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 566 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+...+..+..+..++..+...|++++|+..++++...+|+ ...+..++..+...|++++|.+.++++...
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s--~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS--WLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445677778888888888889999999999999999975 345555888999999999999999987765
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.17 E-value=0.0017 Score=52.30 Aligned_cols=87 Identities=16% Similarity=0.124 Sum_probs=68.9
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC---CHHHHHHHHHHhhhCC---CCchhHHHHHHHHhccccHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG---HFLVATKLLRGLSSDL---GHSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
....+.+.|.+....+. ++..+...+..++++.+ +.++++.+++.+.... ...+.+..++-++.+.|++++|+
T Consensus 13 ~l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 34566777777777666 57888888899999988 5668999998887732 23556778899999999999999
Q ss_pred HHHHHHHhcCCCCc
Q 006281 594 EHIKWIQESSPTML 607 (652)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (652)
+.++.+++..|++.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999874
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0016 Score=64.13 Aligned_cols=86 Identities=8% Similarity=-0.117 Sum_probs=55.3
Q ss_pred cCCCHHHHHHHHHHhhhC---CCCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----C-CCCc---hhHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNH---DVML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-----D-LGHS---DSHVILL 580 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-~~~~---~~~~~l~ 580 (652)
..|++++|..+++++++. -+.| ...+++.++.+|...|++++|+.+++++.. - +..+ .++..|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 567788888888776552 1111 234577777788888888888877776643 1 1122 2455677
Q ss_pred HHHhccccHHHHHHHHHHHHhc
Q 006281 581 KSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 581 ~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..|...|++++|+.+++++.+.
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i 411 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAI 411 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHH
Confidence 7777777777777777776654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0038 Score=56.26 Aligned_cols=108 Identities=13% Similarity=0.096 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhhCCCCc-cHHHHHHHHHHHHhc-----CCHHHHHHHHHHhhh-CCCC-chhHHHHHHHHhcc-ccHHH
Q 006281 521 LQAAFEVFNKSVNHDVML-ARSILSTFMISLCRR-----GHFLVATKLLRGLSS-DLGH-SDSHVILLKSLADA-REVEM 591 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~-~~~~-~~~~~~l~~~~~~~-g~~~~ 591 (652)
...|...++++++.++.- +...|..++..|.+. |+.++|.+.|++..+ +|.. ..++...+..++.. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 566777777777766542 355677777777774 888888888888877 5543 77777888887774 88888
Q ss_pred HHHHHHHHHhcCCC--CcHHHHHHHHHHhhcCCCCchHHHHHHHHHH
Q 006281 592 AIEHIKWIQESSPT--MLQEISAELFASLSSSSYPEPILLLLHALQE 636 (652)
Q Consensus 592 A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 636 (652)
|.+.++++....|. +...+.+.+ .-++|..++.+..+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~~d 297 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHhHH
Confidence 88888888887776 433333322 22556555555443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0026 Score=62.70 Aligned_cols=87 Identities=11% Similarity=-0.035 Sum_probs=69.0
Q ss_pred hcCCHHHHHHHHHHHHHC---CCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhh-----CCC-Ccc-HHHHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEK---GVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVN-----HDV-MLA-RSILSTFM 547 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~---~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~~-~~~~~~l~ 547 (652)
..|++++|+.++++.++. -+-|+ ..+++.|..+|...|++++|..++++++. .|. .|+ ...++.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 578999999999988752 22333 35788899999999999999999998865 232 222 34589999
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 006281 548 ISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..|...|++++|+.+++++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988765
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.81 E-value=0.0076 Score=45.77 Aligned_cols=73 Identities=7% Similarity=-0.015 Sum_probs=53.5
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC--------CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSD--------LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+..-...++..+.+.|++..|..+++.+... ...+..+..++.++.+.|++++|+.+++++.+..|+.....
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 4445566777888888888888888776541 12334667888888889999999999999988888875443
Q ss_pred H
Q 006281 611 S 611 (652)
Q Consensus 611 ~ 611 (652)
.
T Consensus 84 ~ 84 (104)
T 2v5f_A 84 G 84 (104)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.014 Score=52.68 Aligned_cols=110 Identities=14% Similarity=0.048 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHCCCCCC---HhhHHHHHHHHHc-----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc-CCH
Q 006281 486 IEGALRLFHNMLEKGVAPD---ATTYTSLLEGLCQ-----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR-GHF 556 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 556 (652)
...|...+++.++. .|+ ...|..+...|.. -|+.++|.+.|+++++.++.-+..++..+.+.+++. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677778888765 555 5578888888888 499999999999999988754577888889999885 999
Q ss_pred HHHHHHHHHhhhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 557 LVATKLLRGLSSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 557 ~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
++|.+.+++....++.......+.+. +.-++|..+++++..
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~----~~q~eA~~LL~~~~d 297 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVI----LSQKRARWLKAHVQD 297 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHH----HHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHH----HHHHHHHHHHHHhHH
Confidence 99999999998865553122233333 333667667666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0062 Score=60.09 Aligned_cols=96 Identities=9% Similarity=-0.023 Sum_probs=62.3
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCC---CCc----cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----CC-CCc---hh
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHD---VML----ARSILSTFMISLCRRGHFLVATKLLRGLSS-----DL-GHS---DS 575 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~-~~~---~~ 575 (652)
+..+.+.|++++|..+++++++.. ..+ ...+++.++.+|...|++++|+.+++++.. -+ ..+ ..
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777776532 111 234577777778888888888887776643 11 122 34
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHh-----cCCCCc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQE-----SSPTML 607 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~ 607 (652)
+..|+..|...|++++|+.+++++.+ .+|+.+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp 410 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHS 410 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 55788888888888888888887765 366653
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.012 Score=47.34 Aligned_cols=89 Identities=12% Similarity=0.130 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC---CHHHHHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 486 IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET---NLQAAFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 486 ~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
...+.+-|.+..+.|. ++..+...+..++++++ +.++++.++++..+.+ +.-....+..+.-++.+.|++++|.+
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~ 92 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK 92 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence 4455666666666554 57777777888888877 5668888888888766 32245667778888889999999999
Q ss_pred HHHHhhh-CCCCchh
Q 006281 562 LLRGLSS-DLGHSDS 575 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~ 575 (652)
+++.+.+ +|.+..+
T Consensus 93 y~~~lL~ieP~n~QA 107 (152)
T 1pc2_A 93 YVRGLLQTEPQNNQA 107 (152)
T ss_dssp HHHHHHHHCTTCHHH
T ss_pred HHHHHHhcCCCCHHH
Confidence 9988877 6555443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.045 Score=59.70 Aligned_cols=151 Identities=16% Similarity=0.119 Sum_probs=87.1
Q ss_pred HhcCChHHHHH-HHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 376 CKRNKSDELVE-VYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 376 ~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
...+++++|.+ ++..+. +......++..+.+.|..+.|+++.++-. .-.......|+++.|
T Consensus 610 ~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 610 TLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLA 671 (814)
T ss_dssp HHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHH
T ss_pred HHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHH
Confidence 35677777766 442211 12233666777777888888876653211 112334567888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhC
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNH 534 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 534 (652)
.++.+. -.+...|..+...+.+.|+++.|.++|.++.+ |..+...+...|+.+...++-+.+...
T Consensus 672 ~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 672 RDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 877543 24667888888888888888888888887642 233444444466666555554443333
Q ss_pred CCCccHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 535 DVMLARSILSTFMISLCRRGHFLVATKLLRG 565 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 565 (652)
+. ++....+|.+.|++++|++++.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 12223344455666666555443
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0062 Score=60.10 Aligned_cols=91 Identities=7% Similarity=-0.149 Sum_probs=71.4
Q ss_pred HHHHHhcCCHHHHHHHHHHhhhC------CCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhc-----CCCCc--HHH
Q 006281 547 MISLCRRGHFLVATKLLRGLSSD------LGHS---DSHVILLKSLADAREVEMAIEHIKWIQES-----SPTML--QEI 610 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~~------~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~--~~~ 610 (652)
+..+.+.|++++|+.++++..+. +.++ .++..++.+|...|++++|+.+++++++. +|+.+ ...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44566789999999999988651 1222 35668999999999999999999998753 55554 344
Q ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 611 SAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 611 ~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
++.|+.+|...|++++|+.+++++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i 400 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDI 400 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 567999999999999999999987753
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.66 E-value=2.3e-06 Score=81.59 Aligned_cols=115 Identities=12% Similarity=0.171 Sum_probs=60.3
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHH
Q 006281 153 GPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLI 232 (652)
Q Consensus 153 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l 232 (652)
.+.+|..|..+....+.+.+|++.|=+ . -|+..|..++.+..+.|.+++-.+.+...++. ..++.+-+.|
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk---A---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~----~ke~~IDteL 122 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK---A---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK----ARESYVETEL 122 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC---C---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT----CCSTTTTHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh---C---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----hcccccHHHH
Confidence 344566666666666666555544311 1 14555666666666666666666666555543 2223444556
Q ss_pred HHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006281 233 IHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVL 284 (652)
Q Consensus 233 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 284 (652)
+-+|++.+++.+-++++. .||..-...+.+-|...|.++.|.-+|
T Consensus 123 i~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKily 167 (624)
T 3lvg_A 123 IFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLY 167 (624)
T ss_dssp HHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTG
T ss_pred HHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHH
Confidence 666666666544333221 244444444555555555555554444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.42 E-value=0.13 Score=56.12 Aligned_cols=100 Identities=8% Similarity=-0.014 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHH
Q 006281 158 NSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFC 237 (652)
Q Consensus 158 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 237 (652)
..++..+.+.|..+.|.++.+.-. .-.......|++++|.++.+.+ .+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~~--------~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTDE--------SAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTTC--------CCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHhh--------CcHhHHHHHHHHHH
Confidence 555566666666666665542111 1122334556666666664322 33456666777777
Q ss_pred ccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006281 238 KGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKK 286 (652)
Q Consensus 238 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 286 (652)
+.|+++.|.++|..+.. |..+...+...|+.+....+-+.
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~ 732 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKD 732 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHH
Confidence 77777777777766542 22333334445555544444333
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.77 Score=47.24 Aligned_cols=115 Identities=9% Similarity=0.005 Sum_probs=64.9
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHH----HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYT----SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.+.+.|...|....+.. ..+..... .+.......+...++...+........ +.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence 36677777777775432 12322222 222223334424455555555443332 333344444445567888888
Q ss_pred HHHHHHhhhCCC-CchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 560 TKLLRGLSSDLG-HSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 560 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
.+.|+.+..... .+....-++.++...|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 888887766432 333455666777777888888888887765
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.16 E-value=0.029 Score=43.36 Aligned_cols=87 Identities=16% Similarity=0.087 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHH---HHHHHHHhhhCC-C--CchhHHHHHHHHhccccHHHHH
Q 006281 520 NLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLV---ATKLLRGLSSDL-G--HSDSHVILLKSLADAREVEMAI 593 (652)
Q Consensus 520 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~--~~~~~~~l~~~~~~~g~~~~A~ 593 (652)
....+.+.|.+....+. ++..+-..+..++.+.....+ ++.+++.+.... + .-+....++-++.+.|++++|.
T Consensus 16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34455555555555444 466666667777777776555 777777766632 1 2234557777888888888888
Q ss_pred HHHHHHHhcCCCCc
Q 006281 594 EHIKWIQESSPTML 607 (652)
Q Consensus 594 ~~~~~~~~~~~~~~ 607 (652)
+.++.+++..|++.
T Consensus 95 ~~~~~lL~~eP~n~ 108 (126)
T 1nzn_A 95 KYVRGLLQTEPQNN 108 (126)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHHhCCCCH
Confidence 88888888888773
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=96.11 E-value=1.9 Score=46.22 Aligned_cols=256 Identities=11% Similarity=0.024 Sum_probs=132.1
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCChHHHHHHHHHHHhCCC-------CcCHHHHHHHHH
Q 006281 338 IGSVSSIDPRSAIVFFNFMIEKGRVPTLST--LSNLSKNLCKRNKSDELVEVYKVLSANDY-------FTDMESYNVMVS 408 (652)
Q Consensus 338 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~li~ 408 (652)
++....++.++++.+++.....+...+..+ -..+.-+....|..+++..++.......- .+....-.++.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 344556788888777766554221123222 22333345556665667776666554311 011112222323
Q ss_pred HH--HhcCCHHHHHHHHHHHHHcCCCCCHHH--HH--HHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006281 409 FL--CTSGRLREAYGVIQEMKRKGLDPDVSF--YN--SLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSE 482 (652)
Q Consensus 409 ~~--~~~g~~~~a~~~~~~~~~~~~~p~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 482 (652)
++ .-.++ +++.+.+..+.... +..+ .. ++...+.-.|+.+....++..+.+.. ..+..-...+.-++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhh
Confidence 33 33344 45566666665432 2211 22 22233445677777777777776532 2222222333334456
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHhhHH--HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHH
Q 006281 483 VGEIEGALRLFHNMLEKGVAPDATTYT--SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVAT 560 (652)
Q Consensus 483 ~g~~~~A~~~~~~m~~~~~~p~~~~~~--~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 560 (652)
.|+.+.+..+.+.+... ..|....-. ++.-+|+..|+.....+++..+..... .+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHH
Confidence 78888888888888763 222222111 234456778888777778887765432 23333344444455567766667
Q ss_pred HHHHHhhhCCCCchhHH--HHHHHHhccccH-HHHHHHHHHHHh
Q 006281 561 KLLRGLSSDLGHSDSHV--ILLKSLADAREV-EMAIEHIKWIQE 601 (652)
Q Consensus 561 ~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~-~~A~~~~~~~~~ 601 (652)
++++.+.... ++.... .++-+....|+. .+|++.+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 7776665532 333322 222223333332 678888888864
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.069 Score=40.33 Aligned_cols=71 Identities=15% Similarity=0.105 Sum_probs=43.3
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCC------CCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHD------VMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
..-+..+...+.+.|+++.|...|+++++.. ......++..+..++.+.|++++|..+++++.. +|.++..
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 3344455666666666666666666655421 123456677777777777777777777777765 4544433
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.085 Score=40.80 Aligned_cols=92 Identities=12% Similarity=0.097 Sum_probs=65.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHH---HHHHHHHhhhCC-CCccHHHHHHHHHHHHhcCCHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQA---AFEVFNKSVNHD-VMLARSILSTFMISLCRRGHFLVA 559 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A 559 (652)
.....+.+-|.+....|. |+..+-..+..++.++.+... ++.++++....+ +.-.......|.-++.+.|++++|
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence 344555566665555444 677777778888888876665 888888877765 322455667788889999999999
Q ss_pred HHHHHHhhh-CCCCchhH
Q 006281 560 TKLLRGLSS-DLGHSDSH 576 (652)
Q Consensus 560 ~~~~~~~~~-~~~~~~~~ 576 (652)
.+.++.+.+ +|.+..+.
T Consensus 94 ~~~~~~lL~~eP~n~QA~ 111 (126)
T 1nzn_A 94 LKYVRGLLQTEPQNNQAK 111 (126)
T ss_dssp HHHHHHHHHHCTTCHHHH
T ss_pred HHHHHHHHHhCCCCHHHH
Confidence 999999887 66555443
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.59 Score=36.22 Aligned_cols=136 Identities=13% Similarity=0.066 Sum_probs=70.0
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 448 EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 448 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
.|..++..++..+.... .+..-||.+|.-....-+-+-..++++.. |-.-|. ...|+.......
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi~C 83 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKI---GSYFDL----------DKCQNLKSVVEC 83 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHH---GGGSCG----------GGCSCTHHHHHH
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHH---hhhcCc----------HhhhcHHHHHHH
Confidence 45555556655555542 23444444444443333333333333332 111111 234444444444
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHh-hhCCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGL-SSDLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+-.+- .+....+..+..+...|+.+.-.+++..+ ...++.++....++.+|.+.|+..+|-++++++=+.+.
T Consensus 84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~ 156 (172)
T 1wy6_A 84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 156 (172)
T ss_dssp HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence 43221 13334555566666677777777777664 44555666666777777777777777777777666653
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.16 Score=40.27 Aligned_cols=103 Identities=11% Similarity=0.027 Sum_probs=62.0
Q ss_pred CHhhHHHHHHHHHcCCCH------HHHHHHHHHhhhCCCCccH-HHHHHHHHH------HHhcCCHHHHHHHHHHhhhC-
Q 006281 504 DATTYTSLLEGLCQETNL------QAAFEVFNKSVNHDVMLAR-SILSTFMIS------LCRRGHFLVATKLLRGLSSD- 569 (652)
Q Consensus 504 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~g~~~~A~~~~~~~~~~- 569 (652)
|..+|-..+....+.|++ ++..++|++++..-+ |+. ..+...+.. +...++.++|.++|+.+...
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~P-p~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALP-PDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSC-GGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCC-ccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455566566555555666 666666666655322 221 111111111 12347788888888877552
Q ss_pred CCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 570 LGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 570 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..-+-.|...+.--.+.|+..+|.+++.++....|.+.
T Consensus 91 KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 11244566666666788899999999998888888763
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0069 Score=58.37 Aligned_cols=175 Identities=12% Similarity=0.090 Sum_probs=101.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 006281 83 SPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLA 162 (652)
Q Consensus 83 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 162 (652)
|+..|..++.++.+.|.++.....+.-.++.. .++.+=+.|+-+|++.++..+-.+++. .|+..-...+.+
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGD 152 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGD 152 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHH
Confidence 45557777777777777777777776555543 333444567777777777554333221 345555566666
Q ss_pred HHHhcCChhhHHHHHHHHHhCC--------------------CccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCC
Q 006281 163 VLASDGYIDNALKMFDEMSHRG--------------------VEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSM 222 (652)
Q Consensus 163 ~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 222 (652)
-|...|.++.|.-+|..+.... -.-++.||-.+-.+|...+++.-|.-.--.+.-.....
T Consensus 153 rcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL 232 (624)
T 3lvg_A 153 RCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADEL 232 (624)
T ss_dssp HHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCC
T ss_pred HHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHH
Confidence 6666666666666655542210 01255677777777777777666655544444331111
Q ss_pred CCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhc
Q 006281 223 INGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLM 274 (652)
Q Consensus 223 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 274 (652)
+. ++..|-..|.+++-+.+++.-... -......|+-|.-.|++-
T Consensus 233 ~e-------lv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 233 EE-------LINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp SG-------GGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HH-------HHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 11 555667777777777777766532 123455666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.30 E-value=1 Score=37.26 Aligned_cols=27 Identities=7% Similarity=0.132 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 435 VSFYNSLMEACCREDLLRPAKKLWDQM 461 (652)
Q Consensus 435 ~~~~~~ll~~~~~~g~~~~a~~~~~~~ 461 (652)
...|..|.......|+++-|.+.|.+.
T Consensus 34 ~~~Wk~Lg~~AL~~gn~~lAe~cy~~~ 60 (177)
T 3mkq_B 34 SITWERLIQEALAQGNASLAEMIYQTQ 60 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHh
Confidence 344444444444444444444444433
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.30 E-value=0.089 Score=42.73 Aligned_cols=45 Identities=11% Similarity=0.036 Sum_probs=30.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSL 583 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~ 583 (652)
+..+-..+..+|.+.|++++|+.+++.++....++.....|+..|
T Consensus 121 e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 121 EIEVKYKLAECYTVLKQDKDAIAILDGIPSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGGCCHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHCCHHHHHHHHhcCCchhcCHHHHHHHHHHh
Confidence 344545567777777777777777777776555666666666554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.07 E-value=1.2 Score=36.82 Aligned_cols=99 Identities=16% Similarity=0.150 Sum_probs=45.6
Q ss_pred HHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006281 94 LSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNA 173 (652)
Q Consensus 94 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 173 (652)
....|+++.|.++.+.+ -+...|..|.....+.|+++-|.+.|..... +..+.-.|.-.|+.+.-
T Consensus 15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L 79 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKL 79 (177)
T ss_dssp HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHH
T ss_pred HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHH
Confidence 33455555555554443 2344555555555555555555555554421 23333344444544444
Q ss_pred HHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHH
Q 006281 174 LKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLD 213 (652)
Q Consensus 174 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 213 (652)
..+-+.....| -++.....+...|+++++.++|.
T Consensus 80 ~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 80 SKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 43333333322 13333333444455555555443
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.5 Score=37.52 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=56.7
Q ss_pred CHHHHHHHHHHHHhcCCH------HHHHHHHHHHHHcCCCCCHH----HHHHHHH---HHHhcCChhhHHHHHHHHHHcC
Q 006281 399 DMESYNVMVSFLCTSGRL------REAYGVIQEMKRKGLDPDVS----FYNSLME---ACCREDLLRPAKKLWDQMFASG 465 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~------~~a~~~~~~~~~~~~~p~~~----~~~~ll~---~~~~~g~~~~a~~~~~~~~~~~ 465 (652)
|..+|-..+....+.|++ ++.+++|++.... ++|+.. .|-.+.- .+...+++++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 445555555555555665 6666677666553 333311 0111100 1123367777777777776552
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006281 466 CSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP 503 (652)
Q Consensus 466 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p 503 (652)
-.- ...|....+--.++|+...|.+++.+.+..+.+|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 5555555555666777777777777777665554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.31 E-value=1.4 Score=34.16 Aligned_cols=141 Identities=9% Similarity=0.025 Sum_probs=86.6
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHH
Q 006281 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQV 208 (652)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 208 (652)
+.-.|.+++..++..+..... +..-||-++--....-+-+-..++++.+-+. .|.. ..|++...
T Consensus 17 ~ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHH
Confidence 345677888888888776643 5566776666666555555555555554321 1211 12333333
Q ss_pred HHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 209 LSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKR 288 (652)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 288 (652)
...+-.+.. +.......++.....|+-++-.+++..+... -+|+....-.+..+|.+.|+..++.+++.+.-
T Consensus 81 i~C~~~~n~-------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC 152 (172)
T 1wy6_A 81 VECGVINNT-------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEAC 152 (172)
T ss_dssp HHHHHHTTC-------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcc-------hHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 333322211 1334445666777788888888888886442 45677777788888888888888888888887
Q ss_pred hcCCC
Q 006281 289 KLGVA 293 (652)
Q Consensus 289 ~~~~~ 293 (652)
+.|++
T Consensus 153 ~kG~k 157 (172)
T 1wy6_A 153 KKGEK 157 (172)
T ss_dssp HTTCH
T ss_pred HhhhH
Confidence 77764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.2 Score=52.55 Aligned_cols=127 Identities=16% Similarity=0.128 Sum_probs=76.3
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCC-CHHHHHHHHHHhhhC------CCC-cc-----
Q 006281 474 NILISKFSEVGE-IEGALRLFHNMLEKGVAPDATTYTSLLEGLCQET-NLQAAFEVFNKSVNH------DVM-LA----- 539 (652)
Q Consensus 474 ~~l~~~~~~~g~-~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~------~~~-~~----- 539 (652)
..++..+...++ ++.|..+|+++......-+......++..+...+ +--+|.+++.+.++. ... .+
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 444555555555 5779999999887632212222223333333333 234566767665531 110 01
Q ss_pred -----HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 540 -----RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 540 -----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
...+..=++.+...|+++-|+++.++... .|....+|..|+.+|...|+++.|+-.+..+.
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11222224446677888888888888877 66777888888888888888888887776653
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.67 Score=36.48 Aligned_cols=72 Identities=11% Similarity=0.023 Sum_probs=57.8
Q ss_pred CCccHHHHHHHHHHHHhcCCH---HHHHHHHHHhhh-CCC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 536 VMLARSILSTFMISLCRRGHF---LVATKLLRGLSS-DLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..|+..+-..+..++.+.... .+++.+++.+.. .+. .-+....++-++.+.|++++|.++.+.+++..|++.
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 357888888899999988765 467888888766 332 234556899999999999999999999999999884
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.86 E-value=0.65 Score=36.05 Aligned_cols=73 Identities=11% Similarity=0.023 Sum_probs=52.4
Q ss_pred CCCccHHHHHHHHHHHHhcCCH---HHHHHHHHHhhh-CCC-CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 535 DVMLARSILSTFMISLCRRGHF---LVATKLLRGLSS-DLG-HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 535 ~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+..|++.+-..++.++.+..+. .+++.+++.+.. .+. .-+.+..++-++.+.|++++|.+..+.+++..|++.
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4556777777778888877654 467777777765 321 234556788888888888888888888888888874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.60 E-value=2.9 Score=41.23 Aligned_cols=187 Identities=12% Similarity=0.090 Sum_probs=89.3
Q ss_pred CCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHH----hc
Q 006281 414 GRLREAYGVIQEMKRK-----GLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFAS-GCSGNLKTYNILISKFS----EV 483 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~-----~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~----~~ 483 (652)
|++++|++.+-.+.+. ...........++..|...++++...+.+.-+.+. |..+. ....+++.+. ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 6778888777665542 12334556777788888888888877777665543 32222 2223333222 12
Q ss_pred CCHHHH--HHHHHHHHH--CC-CCC---CHhhHHHHHHHHHcCCCHHHHHHHHHHhhh--CCCCcc---HHHHHHHHHHH
Q 006281 484 GEIEGA--LRLFHNMLE--KG-VAP---DATTYTSLLEGLCQETNLQAAFEVFNKSVN--HDVMLA---RSILSTFMISL 550 (652)
Q Consensus 484 g~~~~A--~~~~~~m~~--~~-~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~---~~~~~~l~~~~ 550 (652)
...+.. ..+.+.... .| +-. .......|...+...|++.+|..++.++.. .+.... ...+..-++.|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 221111 111111100 01 000 011223455556666666666666665532 111111 22344455556
Q ss_pred HhcCCHHHHHHHHHHhhh----CCCCch----hHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 551 CRRGHFLVATKLLRGLSS----DLGHSD----SHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 551 ~~~g~~~~A~~~~~~~~~----~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
...+++.+|..++.++.. .+..+. .+...+..+...+++.+|-..|.++...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~ 247 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQT 247 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 666666666666665432 222221 2234455555566666666665555544
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=93.57 E-value=4.4 Score=37.26 Aligned_cols=64 Identities=9% Similarity=0.129 Sum_probs=37.4
Q ss_pred hHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH----HHHHHHhCCCccCcccHHHHH
Q 006281 121 VYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALK----MFDEMSHRGVEFSTIGFGVFI 196 (652)
Q Consensus 121 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~----~~~~m~~~~~~~~~~~~~~ll 196 (652)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|-+ +.+...+.+++++......++
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga---------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~ 99 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA---------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV 99 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34556666777788888887766542 22344555444443 345555566666666665555
Q ss_pred HHH
Q 006281 197 WKF 199 (652)
Q Consensus 197 ~~~ 199 (652)
..+
T Consensus 100 ~l~ 102 (312)
T 2wpv_A 100 RLI 102 (312)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=93.41 E-value=0.77 Score=51.76 Aligned_cols=191 Identities=13% Similarity=0.038 Sum_probs=107.6
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGV------------------- 501 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~------------------- 501 (652)
++..+.+.+..+.+.++..-. +.+....-.+..+|...|++++|.++|++... |+
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~ 891 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEK 891 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHT
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhccccccccc
Confidence 444555666666555543322 23333334455566667777777777765421 11
Q ss_pred ----CCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCc
Q 006281 502 ----APDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISLCRRGHFLVATKLLRGLSSDLGHS 573 (652)
Q Consensus 502 ----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 573 (652)
..-..-|..++..+.+.|.++.+.++-+.+++....-+ ...|..+.+.+...|++++|...+-.++......
T Consensus 892 ~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~ 971 (1139)
T 4fhn_B 892 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKK 971 (1139)
T ss_dssp TTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCH
T ss_pred ccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHH
Confidence 00112356677778888888888888777665332112 2257778888888899999988888777654555
Q ss_pred hhHHHHHHHHhccccHH------------HHHHHHHH-HHhc-CCCCcHHHHHHHHHHhhcCCCCchHH-HHHHHHHHc
Q 006281 574 DSHVILLKSLADAREVE------------MAIEHIKW-IQES-SPTMLQEISAELFASLSSSSYPEPIL-LLLHALQEK 637 (652)
Q Consensus 574 ~~~~~l~~~~~~~g~~~------------~A~~~~~~-~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~ 637 (652)
+....|+..++..|..+ +..+++.. +... ++...+..|..|..-+...|++..|- -+|+.+.+.
T Consensus 972 ~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 972 SCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 56666666665554443 33344432 1111 22332344554555555666665554 455555443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.17 E-value=1.5 Score=34.08 Aligned_cols=76 Identities=13% Similarity=0.177 Sum_probs=55.9
Q ss_pred CCCCCHhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchh
Q 006281 500 GVAPDATTYTSLLEGLCQETN---LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDS 575 (652)
Q Consensus 500 ~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~ 575 (652)
+-.|+..+--.+..++.++.+ ..+++.++++..+.++.-....+-.+.-++.+.|++++|.++.+.+.+ +|.+..+
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA 114 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 114 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence 445666666667777777664 456888888888776544566777788889999999999999998887 5555443
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.16 E-value=1.8 Score=34.10 Aligned_cols=72 Identities=13% Similarity=0.165 Sum_probs=47.6
Q ss_pred CCCHhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCc
Q 006281 502 APDATTYTSLLEGLCQETN---LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHS 573 (652)
Q Consensus 502 ~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~ 573 (652)
.|+..+--.+..++.++.+ ..+++.++++....++.-....+..+.-++.+.|++++|.++.+.+.+ +|.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 5566666666666766654 446777777776655543555666677777788888888888877776 44443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.38 E-value=0.74 Score=48.32 Aligned_cols=128 Identities=11% Similarity=0.087 Sum_probs=85.8
Q ss_pred HHHHHHHHHhcCC-hhhHHHHHHHHHHcCCCCCHHH-H-HHHHHHHHhcC-CHHHHHHHHHHHHHC------CCCC-CHh
Q 006281 438 YNSLMEACCREDL-LRPAKKLWDQMFASGCSGNLKT-Y-NILISKFSEVG-EIEGALRLFHNMLEK------GVAP-DAT 506 (652)
Q Consensus 438 ~~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~-~-~~l~~~~~~~g-~~~~A~~~~~~m~~~------~~~p-~~~ 506 (652)
...++..+...++ .+.|..+|+++.+.. |.... + ..++..+...+ +--+|.+++.+.++. ...+ +..
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 3455555655666 588999999998874 43333 2 23333333333 233567777666531 1111 111
Q ss_pred ----------hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 507 ----------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 507 ----------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
....=.+-|...|+++.|+++-++++..-+. +-.+|..|+.+|...|+++.|+-.+..++.
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPs-eF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALD-SFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCch-hhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 1111233466789999999999999988876 788999999999999999999999998875
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=91.85 E-value=0.63 Score=41.30 Aligned_cols=52 Identities=27% Similarity=0.334 Sum_probs=26.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+.|.++++++....-++..+. |...-..|++.+|-.|++++|.+-++...+
T Consensus 8 l~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~ 59 (273)
T 1zbp_A 8 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIK 59 (273)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3445555555555555555444 444455555555555555555554444433
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=91.68 E-value=8.3 Score=35.74 Aligned_cols=168 Identities=8% Similarity=-0.033 Sum_probs=89.8
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHhhHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLF----HNMLEKGVAPDATTYTSLL 512 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~m~~~~~~p~~~~~~~l~ 512 (652)
+|.++..-|.+.+++++|++++..-. ..+.+.|+..-|.++- +-+.+.++++|......++
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~GA---------------~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~ 101 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASVS---------------QTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL 101 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---------------HHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHH---------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34445555677777777777654332 1233344444433332 3334456666666666666
Q ss_pred HHHHcCCC--HHHHHHHHHHhhh------CCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHh
Q 006281 513 EGLCQETN--LQAAFEVFNKSVN------HDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLA 584 (652)
Q Consensus 513 ~~~~~~g~--~~~a~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~ 584 (652)
..+..... ++ =..+.+++++ ....-++.....+...|.+.+++.+|+..|- .-+.+.++.+..+..-+.
T Consensus 102 ~L~~~~~~~~p~-r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--lg~~~s~~~~a~mL~ew~ 178 (336)
T 3lpz_A 102 GCLRLFQPGEPV-RKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--LGTKESPEVLARMEYEWY 178 (336)
T ss_dssp HHHTTSCTTCHH-HHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--TSCTTHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCcH-HHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--hcCCchHHHHHHHHHHHH
Confidence 65554332 11 1223333322 2233467788888999999999999988772 222111233332222222
Q ss_pred ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 585 DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 585 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.+.+|..........+--|...|+...|...++.+.++
T Consensus 179 ---------------~~~~~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~~ 216 (336)
T 3lpz_A 179 ---------------KQDESHTAPLYCARAVLPYLLVANVRAANTAYRIFTSA 216 (336)
T ss_dssp ---------------HTSCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ---------------HhcCCccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 22223322222222555577888999999888777764
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.35 E-value=12 Score=36.84 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=31.9
Q ss_pred ccChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHh
Q 006281 61 LTHHSLALGFFNWASQ----QPNFTHSPLSYHSILKSLSLSRQINAIDSVLKQVKV 112 (652)
Q Consensus 61 ~~~~~~a~~~f~~~~~----~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 112 (652)
.++++.|++-+.-+.+ ......+......++..|...++++...+.+..+.+
T Consensus 29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk 84 (445)
T 4b4t_P 29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK 84 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4566667666554432 233445566677777777777777777666655444
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=91.02 E-value=1.3 Score=42.37 Aligned_cols=25 Identities=12% Similarity=-0.145 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQM 461 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~ 461 (652)
....|...|.+.|+.++..+++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444555555555555555555544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=90.88 E-value=8.1 Score=43.55 Aligned_cols=52 Identities=12% Similarity=0.063 Sum_probs=33.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 370 NLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEM 426 (652)
Q Consensus 370 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~ 426 (652)
.++..+.+.+..+.+.++...... +...--.+..+|...|++++|.+.|++.
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~-----~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNS-----DPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCC-----CHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhccC-----CcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 455556667777776665443322 3334445667788888888888888764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.81 E-value=1.2 Score=36.21 Aligned_cols=25 Identities=8% Similarity=0.033 Sum_probs=20.7
Q ss_pred HHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 608 QEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
..-|. +..+|.+.|++++|+.+++.
T Consensus 123 Elkyk-ia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 123 EVKYK-LAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp HHHHH-HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHH-HHHHHHHHCCHHHHHHHHhc
Confidence 44466 88899999999999998874
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=1.6 Score=42.10 Aligned_cols=66 Identities=14% Similarity=0.074 Sum_probs=37.4
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhh
Q 006281 441 LMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE-----KGVAPDATT 507 (652)
Q Consensus 441 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~~~~p~~~~ 507 (652)
++..+...|+++++...+..+.... +.+...|..+|.+|.+.|+..+|++.|+++.+ .|+.|+..+
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 4445555666666666665555543 44555666666666666666666666655432 355555443
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.91 E-value=1 Score=43.61 Aligned_cols=59 Identities=8% Similarity=-0.050 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHH
Q 006281 542 ILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQ 600 (652)
Q Consensus 542 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 600 (652)
....++..+...|++++|...+..+.. +|.+...+..++.++...|+..+|++.|+++.
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 445556666677777777776666655 56666667777777777777777777776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=88.62 E-value=4.6 Score=35.87 Aligned_cols=120 Identities=19% Similarity=0.194 Sum_probs=68.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc--HHHHHHHHHHHHhcCCH
Q 006281 479 KFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA--RSILSTFMISLCRRGHF 556 (652)
Q Consensus 479 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~ 556 (652)
...+.|++++|++....-++.... |...-..++..+|-.|++++|.+-++...+.++... ...|..+|.+-...
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE~~R--- 81 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQAR--- 81 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHH---
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHH---
Confidence 445677777787777777766433 666667777777888888888877776666554322 22344444331110
Q ss_pred HHHHHHHH--HhhhCCCCchhHH-HHHHHH--hccccHHHHHHHHHHHHhcCCC
Q 006281 557 LVATKLLR--GLSSDLGHSDSHV-ILLKSL--ADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 557 ~~A~~~~~--~~~~~~~~~~~~~-~l~~~~--~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+ ++|. ..+.-...+..|. .++.+. ...|+.++|.++-.++.+..|.
T Consensus 82 -~--~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~ 132 (273)
T 1zbp_A 82 -K--DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 132 (273)
T ss_dssp -H--HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred -H--HHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcc
Confidence 0 0111 1122233344444 444444 3457888888877777766544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=88.07 E-value=32 Score=37.10 Aligned_cols=260 Identities=15% Similarity=0.103 Sum_probs=142.5
Q ss_pred HHHccCCHHHHHHHHHHHHcCCCCCCHHH-HHHHH--HHHhcCChhHHHHHHHHHHHcCC--C-----CCHHHHHHHHHH
Q 006281 305 GLIVERRICEAKELGEVIVSGKFTIDDDV-LNALI--GSVSSIDPRSAIVFFNFMIEKGR--V-----PTLSTLSNLSKN 374 (652)
Q Consensus 305 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~--~~~~~~~~~~a~~~~~~m~~~~~--~-----~~~~~~~~l~~~ 374 (652)
+.+..|+.+++..+++.....+...+..+ ..+++ +....|..+++..++...+...- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 45567777777777665554321223333 22222 22334544567887777664321 1 111112222223
Q ss_pred HHhcCC-hHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH--HHHHhcC
Q 006281 375 LCKRNK-SDELVEVYKVLSANDYFTDME--SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLM--EACCRED 449 (652)
Q Consensus 375 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll--~~~~~~g 449 (652)
++-.|. -+++.+.+..+....- +... .--++...++-.|+.+....++..+.+.. +..+...+. -++...|
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g 538 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYG 538 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTT
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCC
Confidence 332332 2355555555554321 1111 11233444556788888888888776542 333333333 3445779
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHH
Q 006281 450 LLRPAKKLWDQMFASGCSGNLKTYN--ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEV 527 (652)
Q Consensus 450 ~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~ 527 (652)
+.+.+..+++.+.... .|....-. ++.-+|+..|+.....++++.+.+. ...+......+.-++...|+.+.+.++
T Consensus 539 ~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 539 RQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp CGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred ChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 9999999999888642 33333222 3445677888987777799988864 222333333333345556777777777
Q ss_pred HHHhhhCCCCccHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhCCC
Q 006281 528 FNKSVNHDVMLARSILSTFMISLCRRGHF-LVATKLLRGLSSDLG 571 (652)
Q Consensus 528 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~ 571 (652)
++.+... ..|....-..+..+....|.. .+++..+..+..++.
T Consensus 617 v~~L~~~-~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D~d 660 (963)
T 4ady_A 617 VQLLSKS-HNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKDPV 660 (963)
T ss_dssp TTTGGGC-SCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTCSS
T ss_pred HHHHHhc-CCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccCCC
Confidence 7754443 344555445555555556553 688889999887543
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.01 E-value=6.2 Score=28.77 Aligned_cols=45 Identities=9% Similarity=0.139 Sum_probs=20.9
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+..+-++.+....+.|++....+.+.+|.+.+++..|+++|+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 333444444444444444444444444444444444444444444
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.89 E-value=3.2 Score=30.20 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=43.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVS 408 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~ 408 (652)
|.-+..+-++.+...++.|++..+.+.+++|.+.+++..|+++|+.+..+--. ....|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~-~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP-HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC-chhhHHHHHH
Confidence 44456666677777778888888888888888888888888888877754322 2334555543
|
| >1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 | Back alignment and structure |
|---|
Probab=84.66 E-value=3.3 Score=37.66 Aligned_cols=13 Identities=8% Similarity=0.197 Sum_probs=5.8
Q ss_pred HHHHHcCCChhHH
Q 006281 126 IPSLIQGKNTQKA 138 (652)
Q Consensus 126 i~~~~~~g~~~~a 138 (652)
+...++.|+.+..
T Consensus 9 L~~A~~~g~~~~v 21 (285)
T 1wdy_A 9 LIKAVQNEDVDLV 21 (285)
T ss_dssp HHHHHHTTCHHHH
T ss_pred HHHHHHcCCHHHH
Confidence 3334455554433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=82.67 E-value=11 Score=29.17 Aligned_cols=43 Identities=9% Similarity=0.159 Sum_probs=20.4
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006281 455 KKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
.+-++.+...++.|++......+.+|.+.+++..|+++|+-.+
T Consensus 73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3333444444444555555555555555555555555554444
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=81.13 E-value=33 Score=31.47 Aligned_cols=80 Identities=15% Similarity=-0.052 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CChhhHHHHHHHHHHcCCCCCHHHHHH
Q 006281 399 DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE---DLLRPAKKLWDQMFASGCSGNLKTYNI 475 (652)
Q Consensus 399 ~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~ 475 (652)
++.....+...|.+.|++.+|...|-. |..-|...+..++.-+... |...++- ...-..
T Consensus 133 dp~LH~~~a~~~~~e~~~~~A~~H~i~----~~~~s~~~~a~~l~~w~~~~~~~~~~e~d--------------lf~~Ra 194 (312)
T 2wpv_A 133 DPYLHNTIGSKLLEGDFVYEAERYFML----GTHDSMIKYVDLLWDWLCQVDDIEDSTVA--------------EFFSRL 194 (312)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHT----SCHHHHHHHHHHHHHHHHHTTCCCHHHHH--------------HHHHHH
T ss_pred CHHHHHHHHHHHhhcCCHHHHHHHHHh----CCCccHHHHHHHHHHHHHhcCCCCcchHH--------------HHHHHH
Confidence 666777788888888888887776641 1111344444444444333 3322211 111111
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 006281 476 LISKFSEVGEIEGALRLFHNML 497 (652)
Q Consensus 476 l~~~~~~~g~~~~A~~~~~~m~ 497 (652)
+--|.-.|+...|..+|+...
T Consensus 195 -VL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 195 -VFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp -HHHHHHTTBHHHHHHHHHHHH
T ss_pred -HHHHHHhcCHHHHHHHHHHHH
Confidence 223445677777777777665
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 652 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.92 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.39 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.33 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.26 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.23 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.22 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.21 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.17 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.17 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.16 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.79 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.76 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.73 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.7 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.64 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.63 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.62 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.58 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.56 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.51 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.46 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.41 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.41 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.34 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.31 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.25 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.21 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.21 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.16 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.15 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.14 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.07 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.02 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.93 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.85 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.81 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.62 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.6 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.55 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.44 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.14 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 96.37 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.11 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.83 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 95.38 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.05 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.74 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.11 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 91.88 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.49 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.43 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=1.6e-22 Score=199.70 Aligned_cols=381 Identities=12% Similarity=0.080 Sum_probs=275.7
Q ss_pred HHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCC
Q 006281 197 WKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGS 276 (652)
Q Consensus 197 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~ 276 (652)
..+.+.|++++|.+.++++.+. .|.+..++..+..+|.+.|++++|...|++..+... -+..+|..+..+|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQ---EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHhhhhcc
Confidence 3455667777777777777666 556666666677777777777777777777665421 245566667777777777
Q ss_pred HHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHH
Q 006281 277 VFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEVIVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFM 356 (652)
Q Consensus 277 ~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m 356 (652)
+++|...+....+...... .............+.... +.......
T Consensus 83 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 127 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPDFI-DGYINLAAALVAAGDMEG----------------------------------AVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHSCSSH----------------------------------HHHHHHHH
T ss_pred ccccccccccccccccccc-cccccccccccccccccc----------------------------------cccccccc
Confidence 7777777766655432211 111111111112222222 22222222
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006281 357 IEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVS 436 (652)
Q Consensus 357 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~ 436 (652)
..... ................+....+...+.......+. +...+..+...+...|++++|...+++..+.... +..
T Consensus 128 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T d1w3ba_ 128 LQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp HHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ccccc-ccccccccccccccccchhhhhHHHHHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence 22221 12233333444455667777777777766655433 5667888888899999999999999988876433 567
Q ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH
Q 006281 437 FYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC 516 (652)
Q Consensus 437 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~ 516 (652)
.+..+...+...|++++|...++.....+ +.+...+..+...+.+.|++++|+..|++..+.... +..++..+...+.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 78888899999999999999999988875 567778888999999999999999999999876433 5778888999999
Q ss_pred cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHH
Q 006281 517 QETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEH 595 (652)
Q Consensus 517 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~ 595 (652)
..|++++|.+.++.+....+. +...+..+..++...|++++|++.++++.+ .|..+..+..++.++.+.|++++|++.
T Consensus 283 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~ 361 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLCPT-HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred HcCCHHHHHHHHHhhhccCCc-cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999999999999988877665 777888899999999999999999999877 677788899999999999999999999
Q ss_pred HHHHHhcCCCCcHHHHHHHHHHhhcCCC
Q 006281 596 IKWIQESSPTMLQEISAELFASLSSSSY 623 (652)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (652)
++++.+.+|+... .+..++.+|.+.||
T Consensus 362 ~~~al~l~P~~~~-a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 362 YKEAIRISPTFAD-AYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTCTTCHH-HHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHH-HHHHHHHHHHHcCC
Confidence 9999999998854 45559999888775
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.1e-21 Score=190.34 Aligned_cols=381 Identities=12% Similarity=0.007 Sum_probs=261.1
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccCC
Q 006281 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKR 241 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 241 (652)
..+.+.|++++|++.|+++.+... -+...+..+..++.+.|++++|...+++..+. .|.+..++..+..+|.+.|+
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~---~p~~~~a~~~l~~~~~~~g~ 82 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ---NPLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHhhhhcc
Confidence 344555666666666666655421 13445555555666666666666666666655 45556666667777777777
Q ss_pred HHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCCChhhHHHHHHHHHccCCHHHHHHHHHH
Q 006281 242 VEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKKRKLGVAPRTNDYREFILGLIVERRICEAKELGEV 321 (652)
Q Consensus 242 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 321 (652)
+++|.+.+....+.... +...+..........+....+.............. ..............+....+..
T Consensus 83 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~---- 156 (388)
T d1w3ba_ 83 LQEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDL-YCVRSDLGNLLKALGRLEEAKA---- 156 (388)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTC-THHHHHHHHHHHTTSCHHHHHH----
T ss_pred ccccccccccccccccc-ccccccccccccccccccccccccccccccccccc-ccccccccccccccchhhhhHH----
Confidence 77777777776654322 33333333333444444444433333332222111 1111122222223333333333
Q ss_pred HHcCCCCCCHHHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHH
Q 006281 322 IVSGKFTIDDDVLNALIGSVSSIDPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDME 401 (652)
Q Consensus 322 ~~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 401 (652)
.+....... +-+...+..+...+...|+++.|...++...+..+. +..
T Consensus 157 ------------------------------~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T d1w3ba_ 157 ------------------------------CYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp ------------------------------HHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred ------------------------------HHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence 333332222 224556666677788888888888888887776543 667
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS 481 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 481 (652)
.|..+...+...|++++|+..+++....+.. +...+..+...+.+.|++++|...|++..+.. +.+..++..+..++.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 8888889999999999999999988876543 66777888888899999999999999988764 556778888999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHH
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATK 561 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 561 (652)
..|++++|.+.++...... +.+...+..+...+...|++++|++.|+++++..+. +..++..++.+|.+.|++++|++
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999888753 346778888888999999999999999998887766 67788889999999999999999
Q ss_pred HHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 562 LLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 562 ~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.++++.+ +|..+.++..++.+|.+.||
T Consensus 361 ~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 361 HYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999877 77788888899998887765
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=5.5e-15 Score=140.91 Aligned_cols=249 Identities=13% Similarity=0.032 Sum_probs=166.9
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhH
Q 006281 375 LCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPA 454 (652)
Q Consensus 375 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a 454 (652)
+.+.|++++|+..|+.+.+..+. +..+|..+..+|...|++++|+..|.+..+.... +...+..+...+...|++++|
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A 106 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQA 106 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence 44555555555555555554433 4445555555555555555555555555544322 344455555555555555555
Q ss_pred HHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhhHHHHHHHHHc
Q 006281 455 KKLWDQMFASGCSGN----------------LKTYNILISKFSEVGEIEGALRLFHNMLEKGV-APDATTYTSLLEGLCQ 517 (652)
Q Consensus 455 ~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~l~~~~~~ 517 (652)
.+.++...... |+ .......+..+...+.+.+|.+.|.+..+... .++...+..+...+..
T Consensus 107 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 184 (323)
T d1fcha_ 107 CEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNL 184 (323)
T ss_dssp HHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHH
Confidence 55555554431 11 01111122234455677888888888876432 3356778888889999
Q ss_pred CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHH
Q 006281 518 ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHI 596 (652)
Q Consensus 518 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 596 (652)
.|++++|...|++++...+. +...+..++.++...|++++|++.++++.+ +|..+.++..++.+|.+.|++++|++.+
T Consensus 185 ~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 185 SGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999888776 678899999999999999999999999877 7888889999999999999999999999
Q ss_pred HHHHhcCCCCcH----------HHHHHHHHHhhcCCCCchHH
Q 006281 597 KWIQESSPTMLQ----------EISAELFASLSSSSYPEPIL 628 (652)
Q Consensus 597 ~~~~~~~~~~~~----------~~~~~l~~~~~~~g~~~~a~ 628 (652)
+++.+.+|.... .++..+..++...|+.+.+.
T Consensus 264 ~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999987665532 23444566666666666554
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=8.2e-15 Score=139.67 Aligned_cols=229 Identities=13% Similarity=0.046 Sum_probs=191.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 404 NVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEV 483 (652)
Q Consensus 404 ~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 483 (652)
-.....+.+.|++++|+..|+++.+.... +..+|..+..++...|++++|...|++..+.. +-+...|..+..+|...
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~ 100 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNE 100 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccc
Confidence 34567788999999999999999988543 67889999999999999999999999999875 56788899999999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHh----------------hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC-ccHHHHHHH
Q 006281 484 GEIEGALRLFHNMLEKGVAPDAT----------------TYTSLLEGLCQETNLQAAFEVFNKSVNHDVM-LARSILSTF 546 (652)
Q Consensus 484 g~~~~A~~~~~~m~~~~~~p~~~----------------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l 546 (652)
|++++|.+.+++..... |+.. .....+..+...+.+.+|.+.|.+++..++. .+..++..+
T Consensus 101 ~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l 178 (323)
T d1fcha_ 101 SLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGL 178 (323)
T ss_dssp TCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHH
T ss_pred ccccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 99999999999988642 2211 1111223344556788899999988876543 356788889
Q ss_pred HHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCc
Q 006281 547 MISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPE 625 (652)
Q Consensus 547 ~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (652)
...+...|++++|+..++++.. .|..+..+..++.++...|++++|++.++++.+.+|+.....+ .++.+|...|+++
T Consensus 179 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~-~lg~~~~~~g~~~ 257 (323)
T d1fcha_ 179 GVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRY-NLGISCINLGAHR 257 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH-HHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHH-HHHHHHHHCCCHH
Confidence 9999999999999999999877 7778889999999999999999999999999999998855444 4999999999999
Q ss_pred hHHHHHHHHHHc
Q 006281 626 PILLLLHALQEK 637 (652)
Q Consensus 626 ~a~~~~~~~~~~ 637 (652)
+|++.+++..+.
T Consensus 258 ~A~~~~~~al~l 269 (323)
T d1fcha_ 258 EAVEHFLEALNM 269 (323)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988875
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=4.2e-11 Score=112.08 Aligned_cols=194 Identities=9% Similarity=0.047 Sum_probs=103.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006281 368 LSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG-RLREAYGVIQEMKRKGLDPDVSFYNSLMEACC 446 (652)
Q Consensus 368 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~ 446 (652)
++.+...+.+.+..++|+.+++.+.+.++. +...|+....++...| ++++|+..+++..+.... +..+|..+...+.
T Consensus 46 ~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~ 123 (315)
T d2h6fa1 46 YDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE 123 (315)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence 334444455556666666666666655443 4555555555555544 356666666666555333 4555555566666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC------
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN------ 520 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~------ 520 (652)
+.|++++|++.++.+.+.. +.+...|..+...+...|++++|++.++.+++..+. +...|+.+...+.+.+.
T Consensus 124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~ 201 (315)
T d2h6fa1 124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV 201 (315)
T ss_dssp HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence 6666666666666666553 445556666666666666666666666666654322 44455544444443332
Q ss_pred HHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 006281 521 LQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLS 567 (652)
Q Consensus 521 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 567 (652)
+++|++.+.+++..++. +...|..+...+.. ...+++.+.++...
T Consensus 202 ~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~ 246 (315)
T d2h6fa1 202 LEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLL 246 (315)
T ss_dssp HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHH
T ss_pred hHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHH
Confidence 34555555555555544 44455444443332 22344444444443
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=9.4e-10 Score=102.70 Aligned_cols=198 Identities=8% Similarity=0.051 Sum_probs=92.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 402 SYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRED-LLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 402 ~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.++.+...+.+.+.+++|+.+++++++.... +...|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 3344444444455555555555555554222 3334444444444433 2455555555554443 33445555555555
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC-----
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH----- 555 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----- 555 (652)
.+.|++++|++.++++++...+ +...|..+...+...|++++|++.++++++.++. +...|..+..++.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence 5555555555555555543222 3445555555555555555555555555555444 44444444444443333
Q ss_pred -HHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 556 -FLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 556 -~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
+++|++.+.++.. +|.+..+|..++..+...| .+++.+.++.+.+..|
T Consensus 201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~ 250 (315)
T d2h6fa1 201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQP 250 (315)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTT
T ss_pred hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCC
Confidence 3445555544433 4444444444444433322 2444444444444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.26 E-value=7.2e-10 Score=103.55 Aligned_cols=186 Identities=9% Similarity=0.039 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 417 REAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 417 ~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+.........|..++..+.+.|+++.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44455555544432222334444444555555555555555555554321112234455555555555555555555555
Q ss_pred HHCCCCCCHhhHHHHHHH-HHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCc-
Q 006281 497 LEKGVAPDATTYTSLLEG-LCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHS- 573 (652)
Q Consensus 497 ~~~~~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~- 573 (652)
.+.+.. +...|...... +...|+.+.|..+|+.++...+. ++..+..++..+.+.|+++.|+.+|++.... +.++
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~ 238 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE 238 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH
Confidence 543222 22222222221 22234555555555555544332 3445555555555555555555555554432 1111
Q ss_pred ---hhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 574 ---DSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 574 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
..|...+..-...|+.+.+.++++++.+..|
T Consensus 239 ~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~ 272 (308)
T d2onda1 239 KSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 272 (308)
T ss_dssp GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 1233333333444555555555555555444
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.23 E-value=3.3e-10 Score=103.20 Aligned_cols=201 Identities=10% Similarity=-0.123 Sum_probs=131.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKF 480 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 480 (652)
.+|..+..+|.+.|++++|+..|++.++.... +..+|..+..++.+.|++++|++.|+++.+.. +.+..++..+..+|
T Consensus 38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 115 (259)
T d1xnfa_ 38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL 115 (259)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence 36667778888888888888888888876433 66778888888888888888888888888764 45566788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc----CCH
Q 006281 481 SEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR----GHF 556 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 556 (652)
...|++++|...|++.++.... +......+..++.+.+..+.+..+..........+. .+. ++..+... +..
T Consensus 116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 191 (259)
T d1xnfa_ 116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLM 191 (259)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHH
T ss_pred HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHH
Confidence 8888888888888888765322 344444444445555555555555554444332221 111 12222211 122
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
+.+...+..... .+.....+..++..+...|++++|++.++++...+|.+.
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 243 (259)
T d1xnfa_ 192 ERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNF 243 (259)
T ss_dssp HHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH
Confidence 223222222222 222345667789999999999999999999999998764
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.22 E-value=2.6e-09 Score=99.64 Aligned_cols=185 Identities=12% Similarity=0.036 Sum_probs=88.1
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHh
Q 006281 452 RPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKS 531 (652)
Q Consensus 452 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 531 (652)
++|..+|++..+...+.+...|..++..+.+.|+++.|..+|+++++.........|..++..+.+.|+++.|.++|+++
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 44555555555433233344445555555555555555555555554322222334555555555555555555555555
Q ss_pred hhCCCCccHHHHHHHHHH-HHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC---
Q 006281 532 VNHDVMLARSILSTFMIS-LCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTM--- 606 (652)
Q Consensus 532 ~~~~~~~~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--- 606 (652)
+...+. +...|...+.. +...|+.+.|.++++.+.. .|.++..|...+..+.+.|+++.|..+++++....|.+
T Consensus 161 l~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~ 239 (308)
T d2onda1 161 REDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 239 (308)
T ss_dssp HTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGG
T ss_pred HHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHH
Confidence 544433 22333333322 2223455555555555544 34444455555555555555555555555555543322
Q ss_pred cHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 607 LQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...+|...+..-...|+.+.+.++.+++.+.
T Consensus 240 ~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 240 SGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2234444444444455555555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=3.6e-09 Score=101.33 Aligned_cols=262 Identities=11% Similarity=0.014 Sum_probs=151.4
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCc-CHHHHHHHHHHHH
Q 006281 341 VSSIDPRSAIVFFNFMIEKGRVPT----LSTLSNLSKNLCKRNKSDELVEVYKVLSAND----YFT-DMESYNVMVSFLC 411 (652)
Q Consensus 341 ~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~-~~~~~~~li~~~~ 411 (652)
+..|++++|+.++++.++.....+ ...+..+...+...|++++|...++...+.. ..+ ....+..+...+.
T Consensus 23 ~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (366)
T d1hz4a_ 23 INDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILF 102 (366)
T ss_dssp HHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHH
Confidence 456777777777777766432222 2344555666777777777777777665421 110 1224455556667
Q ss_pred hcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHhcCChhhHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 006281 412 TSGRLREAYGVIQEMKRK----GLD--PD-VSFYNSLMEACCREDLLRPAKKLWDQMFASG----CSGNLKTYNILISKF 480 (652)
Q Consensus 412 ~~g~~~~a~~~~~~~~~~----~~~--p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~ 480 (652)
..|++..+...+.+.... +.. +. ...+..+...+...|+++.+...+....... .......+..+...+
T Consensus 103 ~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (366)
T d1hz4a_ 103 AQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCS 182 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHH
Confidence 777777777777665432 111 11 1234445566667777777777777666531 122234455555666
Q ss_pred HhcCCHHHHHHHHHHHHHC--CCCCC----HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCC---ccHHHHHHHHHHHH
Q 006281 481 SEVGEIEGALRLFHNMLEK--GVAPD----ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVM---LARSILSTFMISLC 551 (652)
Q Consensus 481 ~~~g~~~~A~~~~~~m~~~--~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~ 551 (652)
...+++.++...+.+.... ..... ...+..+...+...|++++|...+++....... .....+..+..++.
T Consensus 183 ~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 262 (366)
T d1hz4a_ 183 LARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 262 (366)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 6677777777776665431 11111 123444555566777777777777766554322 12334555667777
Q ss_pred hcCCHHHHHHHHHHhhh-------CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhc
Q 006281 552 RRGHFLVATKLLRGLSS-------DLGHSDSHVILLKSLADAREVEMAIEHIKWIQES 602 (652)
Q Consensus 552 ~~g~~~~A~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 602 (652)
..|++++|.+.++++.. .+.....+..++.+|...|++++|++.++++.+.
T Consensus 263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l 320 (366)
T d1hz4a_ 263 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 320 (366)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 77777777777776542 1112234556777777777777777777777664
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.21 E-value=7.6e-09 Score=98.96 Aligned_cols=266 Identities=11% Similarity=-0.020 Sum_probs=178.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHcCCCCCCHH----HHHHHH-HHHhcCChhHHHHHHHHHHHcCC-CCC----HHHHHHHH
Q 006281 303 ILGLIVERRICEAKELGEVIVSGKFTIDDD----VLNALI-GSVSSIDPRSAIVFFNFMIEKGR-VPT----LSTLSNLS 372 (652)
Q Consensus 303 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~-~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~ 372 (652)
...+...|++++|..+++...+.....+.. .+..+- .+...|++++|+..|.+..+... .++ ...+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 345678899999999999888765443332 222222 23456899999999988765321 111 33455566
Q ss_pred HHHHhcCChHHHHHHHHHHHh----CCCC--c-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHHHH
Q 006281 373 KNLCKRNKSDELVEVYKVLSA----NDYF--T-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL----DPDVSFYNSL 441 (652)
Q Consensus 373 ~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~----~p~~~~~~~l 441 (652)
..+...|++..+...+..... .... + ....+..+...+...|+++.+...+........ ......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 678888999999988887653 1111 1 123455667788888999999999888776432 2234455666
Q ss_pred HHHHHhcCChhhHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHhhHHHHH
Q 006281 442 MEACCREDLLRPAKKLWDQMFAS----GCSG--NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAP---DATTYTSLL 512 (652)
Q Consensus 442 l~~~~~~g~~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p---~~~~~~~l~ 512 (652)
...+...++...+...+...... +..+ ....+..+...+...|++++|...++......... ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 67777888998888888776653 1111 12345566667788899999999888876543222 234455677
Q ss_pred HHHHcCCCHHHHHHHHHHhhh----CCCCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 006281 513 EGLCQETNLQAAFEVFNKSVN----HDVML-ARSILSTFMISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 568 (652)
..+...|++++|...+++++. .+..| ....+..+..+|.+.|++++|.+.+++...
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888889999999999988764 23222 345677788889999999999998887644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.17 E-value=1.7e-10 Score=109.47 Aligned_cols=234 Identities=6% Similarity=-0.063 Sum_probs=171.0
Q ss_pred HhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCChh
Q 006281 376 CKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSG--RLREAYGVIQEMKRKGLDPDVSFYN-SLMEACCREDLLR 452 (652)
Q Consensus 376 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~-~ll~~~~~~g~~~ 452 (652)
...|++++|..+++...+..+. +...|..+..++...+ ++++|+..++++.+...+ +...+. .....+...+.++
T Consensus 84 ~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~ 161 (334)
T d1dcea1 84 ESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPA 161 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccH
Confidence 3445578888888888876654 6777777777777665 488999999998877433 455544 4446667788999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhh
Q 006281 453 PAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSV 532 (652)
Q Consensus 453 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 532 (652)
.|+..++.+.+.+ +-+...|+.+..++.+.|++++|...++...+. .|+. ..+...+...+..+++...+...+
T Consensus 162 ~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l 235 (334)
T d1dcea1 162 EELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWL 235 (334)
T ss_dssp HHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHH
Confidence 9999999888876 567888888999999999888877666554432 1111 122333455566777888888877
Q ss_pred hCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHH
Q 006281 533 NHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEIS 611 (652)
Q Consensus 533 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 611 (652)
...+. +...+..++..+...|+.++|...+.+... +|.+...+..++.++...|++++|++.++++.+.+|.. ...|
T Consensus 236 ~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~-~~y~ 313 (334)
T d1dcea1 236 LGRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMR-AAYL 313 (334)
T ss_dssp HSCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred HhCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCccc-HHHH
Confidence 76654 444566677778888999999999888766 55566788899999999999999999999999999976 4455
Q ss_pred HHHHHHhh
Q 006281 612 AELFASLS 619 (652)
Q Consensus 612 ~~l~~~~~ 619 (652)
+.|...+.
T Consensus 314 ~~L~~~~~ 321 (334)
T d1dcea1 314 DDLRSKFL 321 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55665554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.17 E-value=8.1e-10 Score=100.51 Aligned_cols=218 Identities=9% Similarity=-0.062 Sum_probs=155.7
Q ss_pred CHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006281 415 RLREAYGVIQEMKRKGLDP---DVSFYNSLMEACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALR 491 (652)
Q Consensus 415 ~~~~a~~~~~~~~~~~~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 491 (652)
+.+.++..+++........ ...+|..+..+|.+.|++++|.+.|++.++.. +.+..+|+.+..+|.+.|++++|+.
T Consensus 14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~ 92 (259)
T d1xnfa_ 14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYE 92 (259)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhh
Confidence 3556666677776543211 22467777889999999999999999999875 6778999999999999999999999
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCC
Q 006281 492 LFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLG 571 (652)
Q Consensus 492 ~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 571 (652)
.|+++++.... +..++..+..++...|++++|...|++.++..+. +......+...+.+.+..+.+..+.........
T Consensus 93 ~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 93 AFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 99999986433 5667888999999999999999999999988765 555555555566666666666555555544333
Q ss_pred CchhHHHHHHHHh----ccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 572 HSDSHVILLKSLA----DAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 572 ~~~~~~~l~~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
....+. +...+. ..+..+.+...+.......|... ..+..++..|...|++++|.+.+++..+.
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLS-ETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 333222 222222 23344555555544444444443 33444899999999999999999987754
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.16 E-value=9.9e-11 Score=111.20 Aligned_cols=249 Identities=7% Similarity=-0.035 Sum_probs=185.5
Q ss_pred CChHHHHHHHHHHHhCCCCcCHHHHHHHHHH----------HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006281 379 NKSDELVEVYKVLSANDYFTDMESYNVMVSF----------LCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCRE 448 (652)
Q Consensus 379 ~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~~ 448 (652)
+..++|.++++.+.+..+. +...|+..-.. +...|.+++|+..++...+...+ +...|..+..++...
T Consensus 43 ~~~~~al~~~~~~l~~~P~-~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~ 120 (334)
T d1dcea1 43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRL 120 (334)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTC
T ss_pred cccHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHh
Confidence 3447888888888776543 44455433322 23345578999999999887544 667777777777666
Q ss_pred CC--hhhHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHH
Q 006281 449 DL--LRPAKKLWDQMFASGCSGNLKTYN-ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAF 525 (652)
Q Consensus 449 g~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 525 (652)
++ +++|...++.+.+.. +++...+. .....+...+.+++|+..++.+++.... +...|..+...+...|++++|.
T Consensus 121 ~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~ 198 (334)
T d1dcea1 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSG 198 (334)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSS
T ss_pred ccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHH
Confidence 54 789999999998875 55566654 4456777889999999999999877554 7888999999999999988887
Q ss_pred HHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 526 EVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
..+++.....+ .. ..+...+...+..+++...+..... ++.....+..++..+...|++++|+..+.+..+.+|
T Consensus 199 ~~~~~~~~~~~----~~-~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 273 (334)
T d1dcea1 199 PQGRLPENVLL----KE-LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPENK 273 (334)
T ss_dssp SCCSSCHHHHH----HH-HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHhHHhHH----HH-HHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc
Confidence 66665444321 11 2233445566777788888777655 666777777888899999999999999999999999
Q ss_pred CCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 605 TMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
... ..+..++.+|...|++++|.+.++++.+.
T Consensus 274 ~~~-~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 274 WCL-LTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp HHH-HHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred hHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 874 45555999999999999999999998875
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=2.3e-08 Score=77.27 Aligned_cols=98 Identities=10% Similarity=-0.012 Sum_probs=85.4
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREV 589 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~ 589 (652)
-...+.+.|++++|+..|+++++.++. +...|..+..++...|++++|+..++++.. +|.++..|..++.++...|++
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 456678889999999999999888876 788899999999999999999999998877 788888999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcHH
Q 006281 590 EMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 590 ~~A~~~~~~~~~~~~~~~~~ 609 (652)
++|+..++++.+.+|+++..
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~ 107 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQL 107 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHH
T ss_pred HHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999987433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=2e-07 Score=79.21 Aligned_cols=124 Identities=15% Similarity=0.082 Sum_probs=86.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHH
Q 006281 478 SKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFL 557 (652)
Q Consensus 478 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 557 (652)
..+...|++++|++.|.++ ..|+..+|..+..+|...|++++|++.|+++++.++. ....|..+..++.+.|+++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence 3455667777777777653 2345666667777777777777777777777777665 5666777777777777777
Q ss_pred HHHHHHHHhhh-CCCC----------------chhHHHHHHHHhccccHHHHHHHHHHHHhcCCCC
Q 006281 558 VATKLLRGLSS-DLGH----------------SDSHVILLKSLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 558 ~A~~~~~~~~~-~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+|++.|++... .+.+ ...+..++.++.+.|++++|++.++.+.+..|..
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~ 153 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 153 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 77777776543 1111 1334567888888899999999888888887765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=5.8e-08 Score=80.01 Aligned_cols=119 Identities=7% Similarity=-0.027 Sum_probs=90.3
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.....|.+.|++++|+..|+++++.++. +...|..++.+|...|++++|++.++++.+ +|....++..++.++...|+
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 3455677888888888888888888876 778888888888888888888888888877 77788888888888888889
Q ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHH--hhcCCCCchHHHH
Q 006281 589 VEMAIEHIKWIQESSPTMLQEISAELFAS--LSSSSYPEPILLL 630 (652)
Q Consensus 589 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~ 630 (652)
+++|+..++++...+|.+...... +..+ +...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~-l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMK-YQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHHHHHHHHHHHhC
Confidence 999988888888888877543332 4333 2233445555443
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.73 E-value=1.5e-07 Score=79.95 Aligned_cols=122 Identities=9% Similarity=-0.103 Sum_probs=102.7
Q ss_pred HHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHH
Q 006281 512 LEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 512 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
...+...|+++.|++.|+++ ..+++.++..++.++...|++++|++.|++..+ +|..+..|..++.++.+.|+++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~ 87 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD 87 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence 34567889999999999864 235677899999999999999999999999988 8889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCCc---------------HHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 591 MAIEHIKWIQESSPTML---------------QEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
+|++.++++....+.+. ..++..++.++...|++++|.+.+++..+.
T Consensus 88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 149 (192)
T ss_dssp HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999999987543221 233334899999999999999999887664
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.70 E-value=4.4e-08 Score=84.69 Aligned_cols=99 Identities=9% Similarity=-0.061 Sum_probs=77.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
|+...+......|.+.|++++|+..|++.++.... +...|..+..+|.+.|++++|+..|+++++.++. +...|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 66667777778888888888888888888776433 6777888888888888888888888888877765 667778888
Q ss_pred HHHHhcCCHHHHHHHHHHhhh
Q 006281 548 ISLCRRGHFLVATKLLRGLSS 568 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~ 568 (652)
.+|.+.|++++|+..++++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHH
Confidence 888888888888888887654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.66 E-value=4e-07 Score=70.05 Aligned_cols=103 Identities=17% Similarity=0.091 Sum_probs=69.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCH
Q 006281 477 ISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHF 556 (652)
Q Consensus 477 ~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 556 (652)
...+...|++++|+..|++.++.... +...|..+..++...|++++|+..++++++.++. ++..|..++.++...|++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCH
Confidence 45566677777777777777765333 5666777777777777777777777777776665 666677777777777777
Q ss_pred HHHHHHHHHhhh-CCCCchhHHHHHH
Q 006281 557 LVATKLLRGLSS-DLGHSDSHVILLK 581 (652)
Q Consensus 557 ~~A~~~~~~~~~-~~~~~~~~~~l~~ 581 (652)
++|+..+++..+ +|.++..+..+..
T Consensus 88 ~~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 88 EEAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 777777777766 5555555444443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.64 E-value=1e-07 Score=82.30 Aligned_cols=103 Identities=11% Similarity=0.072 Sum_probs=93.9
Q ss_pred CCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHH
Q 006281 503 PDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLK 581 (652)
Q Consensus 503 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~ 581 (652)
|+...+......|.+.|++++|+..|++++..++. ++..|..++.+|.+.|++++|+..++++.. +|..+.+|..++.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence 67778888899999999999999999999998876 888999999999999999999999999988 7888889999999
Q ss_pred HHhccccHHHHHHHHHHHHhcCCCC
Q 006281 582 SLADAREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 582 ~~~~~g~~~~A~~~~~~~~~~~~~~ 606 (652)
+|...|++++|+..++++.+.+|..
T Consensus 81 ~~~~l~~~~~A~~~~~~al~l~p~~ 105 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAYSLAKEQ 105 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999998876644
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.63 E-value=6.7e-07 Score=73.41 Aligned_cols=119 Identities=13% Similarity=0.091 Sum_probs=89.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcC
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRG 554 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 554 (652)
.....|.+.|++++|+..|++.++.... +...|..+..+|...|++++|.+.|+++++.++. +...|..++.++...|
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g 92 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG 92 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence 3455677888888888888888876543 6778888888888888999999988888888776 7778888888888889
Q ss_pred CHHHHHHHHHHhhh-CCCCchhHHHHHHHH--hccccHHHHHHH
Q 006281 555 HFLVATKLLRGLSS-DLGHSDSHVILLKSL--ADAREVEMAIEH 595 (652)
Q Consensus 555 ~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 595 (652)
++++|.+.++++.. .|.++..+..+..+. ...+.+++|+..
T Consensus 93 ~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 93 KFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp CHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999888888877 666666665554443 333445555443
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.62 E-value=5.2e-07 Score=82.71 Aligned_cols=162 Identities=15% Similarity=0.080 Sum_probs=75.2
Q ss_pred HHHhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHhhHHHHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEK----GV-APDATTYTSLLE 513 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~l~~ 513 (652)
.|...|++++|.+.|.+..+. +-++ -..+|..+..+|.+.|++++|++.+++..+. |. .....++..+..
T Consensus 46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 125 (290)
T d1qqea_ 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (290)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence 444555555555555544432 1011 1234555555565666666666655554431 10 001223344444
Q ss_pred HHH-cCCCHHHHHHHHHHhhhCC----CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC-CCCc-------hhHHHH
Q 006281 514 GLC-QETNLQAAFEVFNKSVNHD----VML-ARSILSTFMISLCRRGHFLVATKLLRGLSSD-LGHS-------DSHVIL 579 (652)
Q Consensus 514 ~~~-~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~-------~~~~~l 579 (652)
.|. ..|++++|++.++++.+.. ..+ ...++..++..+...|++++|++.++++... +... ..+...
T Consensus 126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (290)
T d1qqea_ 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (290)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence 443 3466666666666554321 110 1233555566666666666666666665441 1111 112233
Q ss_pred HHHHhccccHHHHHHHHHHHHhcCCC
Q 006281 580 LKSLADAREVEMAIEHIKWIQESSPT 605 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 605 (652)
+..+...|+++.|...+++..+.+|.
T Consensus 206 ~~~~l~~~d~~~A~~~~~~~~~~~~~ 231 (290)
T d1qqea_ 206 GLCQLAATDAVAAARTLQEGQSEDPN 231 (290)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---
T ss_pred HHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 44445556666666666666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.62 E-value=7.7e-08 Score=73.49 Aligned_cols=88 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYP 624 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (652)
.+..+.+.|++++|+..++++.. +|..+..|..++.++.+.|++++|+..++++.+.+|......+. ++..|...|++
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~-la~~y~~~g~~ 100 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAA-LAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHH-HHHHHHHCCCH
Confidence 45556666666666666666555 55566666666666666666666666666666666666443333 66666666666
Q ss_pred chHHHHHHHH
Q 006281 625 EPILLLLHAL 634 (652)
Q Consensus 625 ~~a~~~~~~~ 634 (652)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666654
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.58 E-value=2.7e-07 Score=70.31 Aligned_cols=90 Identities=12% Similarity=0.039 Sum_probs=77.8
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhcccc
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADARE 588 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~ 588 (652)
.+...+.+.|++++|...|++++..++. +...|..++.++.+.|++++|+..++++.+ +|..+.++..++.+|...|+
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 4556778889999999999999888876 788888899999999999999999998877 78888899999999999999
Q ss_pred HHHHHHHHHHHH
Q 006281 589 VEMAIEHIKWIQ 600 (652)
Q Consensus 589 ~~~A~~~~~~~~ 600 (652)
+++|++.+++.+
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.56 E-value=1.6e-06 Score=79.33 Aligned_cols=196 Identities=9% Similarity=-0.005 Sum_probs=100.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC----CCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHH
Q 006281 372 SKNLCKRNKSDELVEVYKVLSAN----DYFT-DMESYNVMVSFLCTSGRLREAYGVIQEMKRKGL---DP--DVSFYNSL 441 (652)
Q Consensus 372 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~---~p--~~~~~~~l 441 (652)
...|...+++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|...+++..+... .+ ...++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 44577778888888877776542 1111 124677777777777888877777776543210 10 12334444
Q ss_pred HHHHHh-cCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH------hhHH
Q 006281 442 MEACCR-EDLLRPAKKLWDQMFAS----GCSG-NLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDA------TTYT 509 (652)
Q Consensus 442 l~~~~~-~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~------~~~~ 509 (652)
...|.. .|++++|.+.+++..+. +.++ ...++..+...|...|++++|+..|++.......... ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 444433 46777777776665432 1111 1234555666666666666666666666543211110 1122
Q ss_pred HHHHHHHcCCCHHHHHHHHHHhhhCCCCcc----HHHHHHHHHHHHh--cCCHHHHHHHHHHhh
Q 006281 510 SLLEGLCQETNLQAAFEVFNKSVNHDVMLA----RSILSTFMISLCR--RGHFLVATKLLRGLS 567 (652)
Q Consensus 510 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 567 (652)
..+..+...|+++.|.+.++++.+.++... ......++.++.. .+.+++|+..++++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 333344556666666666666655543211 1223444444433 233555555555443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.55 E-value=0.00016 Score=64.51 Aligned_cols=224 Identities=10% Similarity=-0.040 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 401 ESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLMEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNIL 476 (652)
Q Consensus 401 ~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 476 (652)
..+..|...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344555555556666666666666665554 33344444444443 345566666666655543 22222333
Q ss_pred HHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHH----cCCCHHHHHHHHHHhhhCCCCccHHHHHHHHH
Q 006281 477 ISKFS----EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLC----QETNLQAAFEVFNKSVNHDVMLARSILSTFMI 548 (652)
Q Consensus 477 ~~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 548 (652)
...+. ...+.+.|...++...+.|.. .....+...+. .......+...+.+....+ +...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence 33322 234556666666666655432 12222222222 2334556666666544433 3344555555
Q ss_pred HHHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhc
Q 006281 549 SLCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVEMAIEHIKWIQESSPTMLQEISAELFASLSS 620 (652)
Q Consensus 549 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (652)
.+.. ..+...+..+++...+ ..++.+...++..+.. ..++++|+..++++.+.+. +...++ |+.+|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~-~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~-LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACD-LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFN-LGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHH-HHHHHHT
T ss_pred hhccCCCcccccccchhhhhcccc-ccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHH-HHHHHHc
Confidence 5554 3445566666665544 3456666666666654 4577777888877777642 233333 6666654
Q ss_pred ----CCCCchHHHHHHHHHHcccc
Q 006281 621 ----SSYPEPILLLLHALQEKCLD 640 (652)
Q Consensus 621 ----~g~~~~a~~~~~~~~~~g~~ 640 (652)
..+.++|.+++++..+.|..
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCH
Confidence 33677788888777766643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=6.8e-07 Score=74.11 Aligned_cols=83 Identities=8% Similarity=-0.004 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+|..+..+|.+.|++++|++.++++.. +|.++.++..++.++...|++++|+..++++.+.+|++... ...+..+..
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~-~~~l~~~~~ 141 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA-KTQLAVCQQ 141 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH-HHHHHHHHH
Confidence 3577788889999999999999998877 88888899999999999999999999999999999987544 433655554
Q ss_pred cCCCC
Q 006281 620 SSSYP 624 (652)
Q Consensus 620 ~~g~~ 624 (652)
+.+..
T Consensus 142 ~~~~~ 146 (170)
T d1p5qa1 142 RIRRQ 146 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=4.1e-07 Score=70.11 Aligned_cols=98 Identities=16% Similarity=0.134 Sum_probs=72.2
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhhCCCC---chhHHHHHHH
Q 006281 509 TSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGH---FLVATKLLRGLSSDLGH---SDSHVILLKS 582 (652)
Q Consensus 509 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~---~~~~~~l~~~ 582 (652)
..+++.+...+++++|.+.|++++..++. ++.++..++.++.+.++ +++|+++++++....+. ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34666777778888888888888887775 77777778888876544 44688888887663222 2356678888
Q ss_pred HhccccHHHHHHHHHHHHhcCCCCc
Q 006281 583 LADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 583 ~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
|.+.|++++|++.++++.+.+|++.
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~ 106 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNN 106 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCH
Confidence 8888888888888888888888774
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.41 E-value=0.00026 Score=63.09 Aligned_cols=225 Identities=11% Similarity=0.003 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006281 366 STLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCT----SGRLREAYGVIQEMKRKGLDPDVSFYNSL 441 (652)
Q Consensus 366 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 441 (652)
..+..+...+...+++++|++.|++..+.| +...+..|...|.. ..+...|...+......+ +......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l 76 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL 76 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence 344455555667778888888888877765 55566666666665 557888888888777664 23333333
Q ss_pred HHHHHh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHH
Q 006281 442 MEACCR----EDLLRPAKKLWDQMFASGCSGNLKTYNILISKFS----EVGEIEGALRLFHNMLEKGVAPDATTYTSLLE 513 (652)
Q Consensus 442 l~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~ 513 (652)
...+.. ..+.+.|...++...+.|. +. ....+...+. .......+...+......+ +...+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~-~~--a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~ 150 (265)
T d1ouva_ 77 GNLYYSGQGVSQNTNKALQYYSKACDLKY-AE--GCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS 150 (265)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HH--HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred ccccccccccchhhHHHHHHHhhhhhhhh-hh--HHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence 333332 4567778888888777652 22 2222333332 2445667777777766542 5566666777
Q ss_pred HHHc----CCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc
Q 006281 514 GLCQ----ETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD 585 (652)
Q Consensus 514 ~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~ 585 (652)
.+.. ..+...+...++...+.+ +......+...|.. ..++++|+.+|++..+. ..+.++..|+..|..
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~LG~~y~~ 226 (265)
T d1ouva_ 151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL-ENGGGCFNLGAMQYN 226 (265)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHT
T ss_pred hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhcc-cCHHHHHHHHHHHHc
Confidence 6664 456778888888777665 44455566666665 56799999999988774 467788888888875
Q ss_pred ----cccHHHHHHHHHHHHhcCCCC
Q 006281 586 ----AREVEMAIEHIKWIQESSPTM 606 (652)
Q Consensus 586 ----~g~~~~A~~~~~~~~~~~~~~ 606 (652)
..+.++|.+.++++...+...
T Consensus 227 G~g~~~n~~~A~~~~~kAa~~g~~~ 251 (265)
T d1ouva_ 227 GEGVTRNEKQAIENFKKGCKLGAKG 251 (265)
T ss_dssp TSSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCCCccCHHHHHHHHHHHHHCcCHH
Confidence 347889999999998887544
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.41 E-value=1.5e-06 Score=66.91 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=74.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCC---HHHHHHHHHHhhhCCCCcc-HHHHHHHHHH
Q 006281 474 NILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETN---LQAAFEVFNKSVNHDVMLA-RSILSTFMIS 549 (652)
Q Consensus 474 ~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 549 (652)
..++..+...+++++|.+.|++.+..+.. +..++..+..++.+.++ +++|+.+|++++..++.|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 34666777778888888888888875433 66777777777776544 4468888888877766544 3467778888
Q ss_pred HHhcCCHHHHHHHHHHhhh-CCCCchhHHH
Q 006281 550 LCRRGHFLVATKLLRGLSS-DLGHSDSHVI 578 (652)
Q Consensus 550 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~ 578 (652)
|.+.|++++|++.++++.+ +|.+..+...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l 111 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTEPQNNQAKEL 111 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHhCcCCHHHHHH
Confidence 8888888888888888877 6666555443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.34 E-value=8.4e-06 Score=67.28 Aligned_cols=83 Identities=16% Similarity=0.012 Sum_probs=67.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
+|..+..+|.+.|++++|+..+++++..++. ++..+..++.+|...|++++|+..|+++.+ +|.++.....+..+...
T Consensus 64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 142 (170)
T d1p5qa1 64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQR 142 (170)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5666788888999999999999999988876 788888899999999999999999999877 77777777666666555
Q ss_pred cccHH
Q 006281 586 AREVE 590 (652)
Q Consensus 586 ~g~~~ 590 (652)
.++..
T Consensus 143 ~~~~~ 147 (170)
T d1p5qa1 143 IRRQL 147 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.31 E-value=9.6e-06 Score=65.52 Aligned_cols=69 Identities=13% Similarity=-0.029 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHH
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQE 609 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 609 (652)
.++..++.+|.+.|++++|++.++++.. +|.+..+|..++.++...|++++|+..++++.+.+|++...
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~ 137 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDI 137 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4677889999999999999999999877 88888999999999999999999999999999999988543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.30 E-value=2.9e-06 Score=70.05 Aligned_cols=96 Identities=10% Similarity=0.017 Sum_probs=74.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhh
Q 006281 541 SILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLS 619 (652)
Q Consensus 541 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 619 (652)
.+|..+..+|.+.|++++|+..++++.. +|.+..++..++.++...|++++|++.++++.+.+|++. .+...+..+..
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~-~~~~~l~~~~~ 143 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNK-AARLQIFMCQK 143 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Confidence 3566788889999999999999999887 888899999999999999999999999999999999874 44444655554
Q ss_pred cCCCC-chHHHHHHHHHHc
Q 006281 620 SSSYP-EPILLLLHALQEK 637 (652)
Q Consensus 620 ~~g~~-~~a~~~~~~~~~~ 637 (652)
..+.. +...+.+.+|.++
T Consensus 144 ~~~~~~e~~kk~~~~~f~~ 162 (168)
T d1kt1a1 144 KAKEHNERDRRTYANMFKK 162 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhh
Confidence 44433 3445555555543
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.25 E-value=2.1e-06 Score=67.07 Aligned_cols=91 Identities=10% Similarity=0.087 Sum_probs=49.5
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHH-------HH
Q 006281 508 YTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHV-------IL 579 (652)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~-------~l 579 (652)
+..+...+...|++++|+..|+++++.++. +...+..+..+|.+.|++++|++.++++.+ +|..+..+. .+
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~l 85 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHH
Confidence 344555566666666666666666666554 555666666666666666666666666544 333333222 33
Q ss_pred HHHHhccccHHHHHHHHHHH
Q 006281 580 LKSLADAREVEMAIEHIKWI 599 (652)
Q Consensus 580 ~~~~~~~g~~~~A~~~~~~~ 599 (652)
+..+...+++++|++.+++.
T Consensus 86 g~~~~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 86 GNSYFKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHH
Confidence 33444444555555544444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.23 E-value=4.3e-06 Score=69.15 Aligned_cols=79 Identities=18% Similarity=0.092 Sum_probs=66.7
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFAS 617 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (652)
....+..+..++.+.|++++|+..++++.+ +|..+.+|..++.++...|++++|++.++++.+.+|++.. +...+..+
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~-~~~~l~~~ 154 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKA-IQAELLKV 154 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 445677888999999999999999999988 7888899999999999999999999999999999998743 34435444
Q ss_pred h
Q 006281 618 L 618 (652)
Q Consensus 618 ~ 618 (652)
.
T Consensus 155 ~ 155 (169)
T d1ihga1 155 K 155 (169)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.21 E-value=4.9e-06 Score=64.92 Aligned_cols=97 Identities=10% Similarity=0.046 Sum_probs=65.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc------HHHHHH
Q 006281 472 TYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA------RSILST 545 (652)
Q Consensus 472 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~ 545 (652)
.+..+...|.+.|++++|+..|++.++.+.. +...+..+..+|.+.|++++|++.++++++.++... ..+|..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 3445666777777788888877777765433 566777777777777788888777777766432211 234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 546 FMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 546 l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
+...+...+++++|++.+++....
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~ 108 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhc
Confidence 666777777777777777776553
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.21 E-value=4.8e-06 Score=66.53 Aligned_cols=115 Identities=8% Similarity=-0.022 Sum_probs=83.4
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc----------CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRR----------GHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
-+.+.+++|...|+.+++.+|. +..++..+..++... +.+++|++.++++.+ +|.++.++..++.+|.
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~ 86 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT 86 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHH
Confidence 3445577777777777777765 666777777666533 445788888888877 7888888888888887
Q ss_pred ccc-----------cHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHccc
Q 006281 585 DAR-----------EVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEKCL 639 (652)
Q Consensus 585 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 639 (652)
..| ++++|.+.++++.+.+|++. .....|... .+|.+++.+..++|+
T Consensus 87 ~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~-~~~~~L~~~-------~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 87 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT-HYLKSLEMT-------AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred HcccchhhHHHHHHhHHHhhhhhhcccccCCCHH-HHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence 654 46899999999999999874 333334433 577788888777764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.16 E-value=2.8e-05 Score=62.65 Aligned_cols=77 Identities=13% Similarity=0.024 Sum_probs=64.0
Q ss_pred hhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 506 TTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 506 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
.+|..+..+|.+.|++++|++.++++++.++. +...|..++.++...|++++|+..|++... +|.+......+..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~ 145 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCV 145 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 36677888899999999999999999998876 788899999999999999999999999887 777766665554443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.15 E-value=6.3e-07 Score=88.98 Aligned_cols=113 Identities=8% Similarity=-0.076 Sum_probs=53.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHH
Q 006281 468 GNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFM 547 (652)
Q Consensus 468 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 547 (652)
++...+..+...+.+.|+.++|...++...... ...++..+...+...|++++|...|+++++..+. +...|+.++
T Consensus 118 ~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg 193 (497)
T d1ya0a1 118 PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLA 193 (497)
T ss_dssp -------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHH
T ss_pred hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHH
Confidence 344455566666666666666666665554321 1234555666666667777777777776666655 556667777
Q ss_pred HHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHh
Q 006281 548 ISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLA 584 (652)
Q Consensus 548 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~ 584 (652)
..+...|+..+|+..+.+... +++.+.++..|...+.
T Consensus 194 ~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~ 231 (497)
T d1ya0a1 194 ILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALS 231 (497)
T ss_dssp HHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHH
Confidence 777777777777776666655 4555555555555443
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.14 E-value=0.0021 Score=58.26 Aligned_cols=136 Identities=9% Similarity=0.015 Sum_probs=81.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHhCCCccCHHhHHHHHHHHHcCCChhHHHHHHHHHHhCCCCCChhhHHHHH
Q 006281 82 HSPLSYHSILKSLSLSRQINAIDSVLKQVKVNKITLDSSVYRFIIPSLIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLL 161 (652)
Q Consensus 82 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 161 (652)
||..--..+...|.+.|.++.|..++..+.. |..++..+.+.++++.|.+++.... +..+|..+.
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 3444456667777788888888888875433 6677777888888888877776541 566787777
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCccCcccHHHHHHHHHhcCcHHHHHHHHHHHHhccCCCCCchhhHHHHHHHHHccC
Q 006281 162 AVLASDGYIDNALKMFDEMSHRGVEFSTIGFGVFIWKFCENAKLGQVLSMLDEVRKRENSMINGSVIAVLIIHGFCKGK 240 (652)
Q Consensus 162 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 240 (652)
..+.+......+ .+.......+......++..|-..|.+++...+++..... .+.+...++.++..|++.+
T Consensus 77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~---~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL---ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC---CccchHHHHHHHHHHHHhC
Confidence 777777655443 2223333345555667777788888888888888876543 4455667777888887764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.0018 Score=58.76 Aligned_cols=120 Identities=5% Similarity=0.043 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006281 364 TLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDVSFYNSLME 443 (652)
Q Consensus 364 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~ll~ 443 (652)
+..+|..+...+........+ .+.......+......++..|...|.+++...+++..... -.++...++-++.
T Consensus 68 ~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~ 141 (336)
T d1b89a_ 68 STRTWKEVCFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAI 141 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHH
Confidence 345566666666655554432 1222222334555566777777777777777777766533 2345566666777
Q ss_pred HHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 444 ACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNM 496 (652)
Q Consensus 444 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 496 (652)
.|++.+ .+ ++.+.+...+-. .-...++..|-+.+-++++.-++.++
T Consensus 142 lyak~~-~~---kl~e~l~~~s~~---y~~~k~~~~c~~~~l~~elv~Ly~~~ 187 (336)
T d1b89a_ 142 LYSKFK-PQ---KMREHLELFWSR---VNIPKVLRAAEQAHLWAELVFLYDKY 187 (336)
T ss_dssp HHHTTC-HH---HHHHHHHHHSTT---SCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHhC-hH---HHHHHHHhcccc---CCHHHHHHHHHHcCChHHHHHHHHhc
Confidence 666643 22 333333331111 12233455666666666666555543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.07 E-value=3.7e-05 Score=63.25 Aligned_cols=84 Identities=11% Similarity=-0.024 Sum_probs=68.5
Q ss_pred HhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHH
Q 006281 505 ATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSL 583 (652)
Q Consensus 505 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~ 583 (652)
...|..+..++.+.|++++|+..++++++.++. +...|..++.++.+.|++++|++.++++.+ +|.+......+..+.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~ 155 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVK 155 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 345667788899999999999999999998876 788899999999999999999999999888 777777766666655
Q ss_pred hccccH
Q 006281 584 ADAREV 589 (652)
Q Consensus 584 ~~~g~~ 589 (652)
......
T Consensus 156 ~~l~~~ 161 (169)
T d1ihga1 156 QKIKAQ 161 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444433
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.02 E-value=9e-05 Score=60.72 Aligned_cols=93 Identities=11% Similarity=0.015 Sum_probs=70.7
Q ss_pred hHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhc
Q 006281 507 TYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLAD 585 (652)
Q Consensus 507 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~ 585 (652)
.|..+..+|.+.|++++|+..+++++..++. +...+..++.++...|++++|+..++++.. +|.++.+...+..+...
T Consensus 66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~ 144 (168)
T d1kt1a1 66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKK 144 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4556777888999999999999999988876 778888899999999999999999999887 77777777666666555
Q ss_pred cccHH-HHHHHHHHHH
Q 006281 586 AREVE-MAIEHIKWIQ 600 (652)
Q Consensus 586 ~g~~~-~A~~~~~~~~ 600 (652)
.+... ...+.+.+|.
T Consensus 145 ~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 145 AKEHNERDRRTYANMF 160 (168)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHH
Confidence 44432 3344444443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.93 E-value=4.4e-05 Score=63.05 Aligned_cols=120 Identities=9% Similarity=0.002 Sum_probs=67.8
Q ss_pred HHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhccccHH
Q 006281 511 LLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSDLGHSDSHVILLKSLADAREVE 590 (652)
Q Consensus 511 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 590 (652)
........|++++|.+.|.+++.....+-..- ...+.+ +...-..+.. .....+..++.++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w--~~~~r~~l~~--~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQF--VEPFATALVE--DKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTT--HHHHHHHHHH--HHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHH--HHHHHHHHHH--HHHHHHHHHHHHHHHCCCch
Confidence 34567788999999999999887542210000 000000 0000001100 01234556667777777777
Q ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHH-----cccccCC
Q 006281 591 MAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQE-----KCLDSEI 643 (652)
Q Consensus 591 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~ 643 (652)
+|+..++++.+.+|.. ...+..++.+|.+.|++++|++.|+++.+ .|+.+.|
T Consensus 85 ~Al~~~~~al~~~P~~-e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 85 AVIAELEALTFEHPYR-EPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHSTTC-HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHhCCcc-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 7777777777777766 34454577777777777777777776533 3555444
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.93 E-value=7.8e-06 Score=72.49 Aligned_cols=54 Identities=24% Similarity=0.345 Sum_probs=27.7
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 482 EVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 482 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
+.|++++|+..+++.++.... |...+..+...++..|++++|.+.|+.+++.++
T Consensus 8 ~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P 61 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 345555555555555544322 445555555555555555555555555554443
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.85 E-value=2e-05 Score=69.75 Aligned_cols=121 Identities=18% Similarity=0.059 Sum_probs=69.1
Q ss_pred HcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHH
Q 006281 516 CQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIE 594 (652)
Q Consensus 516 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 594 (652)
.+.|++++|++.+++.++.++. +...+..++..|+..|++++|.+.++...+ +|.....+..+...+...+..+++..
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~~ 85 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFAQ 85 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHHH
Confidence 3557777777777777777665 666777777777777777777777776655 45555555555555555554444433
Q ss_pred HHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 595 HIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
.........+..........+..+...|+.++|.+.++++.+.
T Consensus 86 ~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 86 GAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp SCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 3222111111111222222444556667777777777666655
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=2.8e-06 Score=84.17 Aligned_cols=226 Identities=11% Similarity=-0.062 Sum_probs=128.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhhHHHHHHHH
Q 006281 383 ELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQEMKRKGLDPDV-SFYNSLMEACCREDLLRPAKKLWDQM 461 (652)
Q Consensus 383 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~~~~~~~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~ 461 (652)
+|.+.|++..+.... ....+..+..++...|++++| |++++.. .|+. ..++. ....-...+..+.+.++..
T Consensus 4 eA~q~~~qA~~l~p~-~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~~ 75 (497)
T d1ya0a1 4 QSAQYLRQAEVLKAD-MTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQGQ 75 (497)
T ss_dssp HHHHHHHHHHHHHGG-GTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCC-CHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHHh
Confidence 677888887764322 334666777888888888776 6777654 2321 11111 1111112245567777776
Q ss_pred HHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCcc
Q 006281 462 FASGCSGNLKTYNILISK--FSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLA 539 (652)
Q Consensus 462 ~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 539 (652)
.+....++..-....... +...+.++.|+..++...+.. .++...+..+...+.+.|+.++|...+++.+... .
T Consensus 76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~ 151 (497)
T d1ya0a1 76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---C 151 (497)
T ss_dssp HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---H
T ss_pred cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---H
Confidence 655333433322222222 223445556655555444322 2245567777888889999999998888766533 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHh
Q 006281 540 RSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASL 618 (652)
Q Consensus 540 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (652)
...+..++..+...|++++|++.++++.. +|.+..+|..++.++...|+..+|+..|.++...+|..+. .+..|...+
T Consensus 152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~-a~~nL~~~~ 230 (497)
T d1ya0a1 152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPA-ASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHH-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHH-HHHHHHHHH
Confidence 35677899999999999999999999988 8888899999999999999999999999999999887644 444487776
Q ss_pred hcC
Q 006281 619 SSS 621 (652)
Q Consensus 619 ~~~ 621 (652)
.+.
T Consensus 231 ~~~ 233 (497)
T d1ya0a1 231 SKA 233 (497)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.62 E-value=9.2e-05 Score=58.75 Aligned_cols=121 Identities=11% Similarity=0.030 Sum_probs=68.7
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHH
Q 006281 447 REDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFE 526 (652)
Q Consensus 447 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~ 526 (652)
+.+.+++|++.|+...+.. |.+..++..+..+|...+++..+.+ ..+.+++|+.
T Consensus 9 r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e-------------------------~~~~~~~Ai~ 62 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISD-------------------------AKQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHH-------------------------HHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhH-------------------------HHHHHHHHHH
Confidence 3444555555555555543 4445555555555544333322221 1233467777
Q ss_pred HHHHhhhCCCCccHHHHHHHHHHHHhcC-----------CHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHH
Q 006281 527 VFNKSVNHDVMLARSILSTFMISLCRRG-----------HFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIE 594 (652)
Q Consensus 527 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~ 594 (652)
.|+++++.++. +...|..++.+|...| .+++|.+.|+++.+ +|.+...+..|... .+|.+
T Consensus 63 ~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~-------~ka~~ 134 (145)
T d1zu2a1 63 KFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT-------AKAPQ 134 (145)
T ss_dssp HHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------HTHHH
T ss_pred HHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------HHHHH
Confidence 77777777766 6667777777776544 35788888888877 66555544444443 34445
Q ss_pred HHHHHHh
Q 006281 595 HIKWIQE 601 (652)
Q Consensus 595 ~~~~~~~ 601 (652)
++.++.+
T Consensus 135 ~~~e~~k 141 (145)
T d1zu2a1 135 LHAEAYK 141 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00018 Score=52.03 Aligned_cols=74 Identities=7% Similarity=-0.075 Sum_probs=56.0
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCC-------CchhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHH
Q 006281 539 ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLG-------HSDSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEI 610 (652)
Q Consensus 539 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 610 (652)
+...+..++..+.+.|++++|+..++++.+ .+. ...++..++.++.+.|++++|++.++++.+.+|++....
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~ 83 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence 334455678888888999998888887654 111 134577899999999999999999999999999886555
Q ss_pred HH
Q 006281 611 SA 612 (652)
Q Consensus 611 ~~ 612 (652)
.|
T Consensus 84 ~N 85 (95)
T d1tjca_ 84 GN 85 (95)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.55 E-value=0.00066 Score=55.73 Aligned_cols=112 Identities=10% Similarity=-0.001 Sum_probs=78.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCH-HHHHHHHHHhhhCCCCccHHHHHHHHHHHHhc
Q 006281 475 ILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNL-QAAFEVFNKSVNHDVMLARSILSTFMISLCRR 553 (652)
Q Consensus 475 ~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 553 (652)
.........|++++|.+.|.+.+.. .+.... ..+ ..+.+ ..-..-++. .....+..++..+.+.
T Consensus 16 ~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~l-----~~~-~~~~w~~~~r~~l~~-------~~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 16 TAGVHAAAAGRFEQASRHLSAALRE--WRGPVL-----DDL-RDFQFVEPFATALVE-------DKVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CCSSTT-----GGG-TTSTTHHHHHHHHHH-------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh--Cccccc-----ccC-cchHHHHHHHHHHHH-------HHHHHHHHHHHHHHHC
Confidence 3345678899999999999999864 121110 000 01111 111111111 1234677889999999
Q ss_pred CCHHHHHHHHHHhhh-CCCCchhHHHHHHHHhccccHHHHHHHHHHHHh
Q 006281 554 GHFLVATKLLRGLSS-DLGHSDSHVILLKSLADAREVEMAIEHIKWIQE 601 (652)
Q Consensus 554 g~~~~A~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 601 (652)
|++++|+..++++.. +|.+...|..++.++...|+.++|++.|+++..
T Consensus 81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~ 129 (179)
T d2ff4a2 81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT 129 (179)
T ss_dssp TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999999999999877 888889999999999999999999999998743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.47 E-value=0.00024 Score=57.23 Aligned_cols=62 Identities=13% Similarity=0.002 Sum_probs=34.8
Q ss_pred HHHHHHHHhccccHHHHHHHHHHHHhcCC-------CC---cHHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 576 HVILLKSLADAREVEMAIEHIKWIQESSP-------TM---LQEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 576 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
|..++.+|.+.|++++|++.++++....| .. ....+..++.+|...|++++|.+.+++..+.
T Consensus 58 ~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 58 HAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666665554321 11 1122344667777777777777777766654
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.44 E-value=0.00012 Score=59.01 Aligned_cols=92 Identities=9% Similarity=-0.081 Sum_probs=60.2
Q ss_pred HHHHcCCCHHHHHHHHHHhhhCCCC-c----------cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--------CCCC-
Q 006281 513 EGLCQETNLQAAFEVFNKSVNHDVM-L----------ARSILSTFMISLCRRGHFLVATKLLRGLSS--------DLGH- 572 (652)
Q Consensus 513 ~~~~~~g~~~~a~~~~~~~~~~~~~-~----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~- 572 (652)
..+...|++++|++.|+++++.... | ....|..+..+|...|++++|.+.+++... .+..
T Consensus 17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~ 96 (156)
T d2hr2a1 17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG 96 (156)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence 3444556677777777666553211 0 124567777888888888888877776543 0111
Q ss_pred ---chhHHHHHHHHhccccHHHHHHHHHHHHhcCC
Q 006281 573 ---SDSHVILLKSLADAREVEMAIEHIKWIQESSP 604 (652)
Q Consensus 573 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 604 (652)
...+..++.+|...|++++|++.++++.+..|
T Consensus 97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~ 131 (156)
T d2hr2a1 97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 131 (156)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 12455788899999999999999999887643
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.0014 Score=47.15 Aligned_cols=72 Identities=15% Similarity=0.094 Sum_probs=43.0
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHhhhCC-----CCc-cHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-CCCCchhHHHH
Q 006281 508 YTSLLEGLCQETNLQAAFEVFNKSVNHD-----VML-ARSILSTFMISLCRRGHFLVATKLLRGLSS-DLGHSDSHVIL 579 (652)
Q Consensus 508 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~l 579 (652)
+-.+...+.+.|++++|+..|+++++.. ..+ ...++..+..++.+.|++++|++.++++.+ +|.++.++..+
T Consensus 8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~Nl 86 (95)
T d1tjca_ 8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGNL 86 (95)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHHH
Confidence 3345556666667777766666665421 111 244566677777777777777777777666 55555554433
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=96.37 E-value=0.04 Score=42.02 Aligned_cols=81 Identities=11% Similarity=0.024 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhCCCCchhHHHHHHHHhc----cccHH
Q 006281 519 TNLQAAFEVFNKSVNHDVMLARSILSTFMISLCR----RGHFLVATKLLRGLSSDLGHSDSHVILLKSLAD----AREVE 590 (652)
Q Consensus 519 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 590 (652)
.+.++|++++++..+.+ ++.....|...|.. ..+.++|.+++++..+. .++.+...|+..|.. ..+.+
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~-g~~~a~~~Lg~~y~~G~gv~~d~~ 112 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQYAGKGVVKNEK 112 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhcc-CcchHHHHHHHHHHcCCccCCCHH
Confidence 34555555555555444 22233334433332 23445555555554442 334444445544433 23455
Q ss_pred HHHHHHHHHHhcC
Q 006281 591 MAIEHIKWIQESS 603 (652)
Q Consensus 591 ~A~~~~~~~~~~~ 603 (652)
+|.++++++.+.+
T Consensus 113 ~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 113 QAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCC
Confidence 5555555555443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.11 E-value=0.026 Score=41.58 Aligned_cols=72 Identities=11% Similarity=0.004 Sum_probs=54.5
Q ss_pred CCccHHHHHHHHHHHHhcCC---HHHHHHHHHHhhh-CCCCc-hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCc
Q 006281 536 VMLARSILSTFMISLCRRGH---FLVATKLLRGLSS-DLGHS-DSHVILLKSLADAREVEMAIEHIKWIQESSPTML 607 (652)
Q Consensus 536 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 607 (652)
..+...+-..++.++.+... .++++.+++.+.. +|... +.+..|+-+|.+.|++++|.++++.+++.+|++.
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~ 107 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcH
Confidence 44566677777888876644 5678888888766 43333 5667888889999999999999999999999884
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.83 E-value=0.14 Score=38.78 Aligned_cols=15 Identities=13% Similarity=0.040 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHcC
Q 006281 416 LREAYGVIQEMKRKG 430 (652)
Q Consensus 416 ~~~a~~~~~~~~~~~ 430 (652)
+++|+.+|++..+.|
T Consensus 9 ~~~A~~~~~kaa~~g 23 (133)
T d1klxa_ 9 LKKAIQYYVKACELN 23 (133)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 444444444444443
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=95.38 E-value=1.1 Score=42.00 Aligned_cols=204 Identities=10% Similarity=-0.005 Sum_probs=96.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006281 414 GRLREAYGVIQEMKRKGLDPDVSFYNSLM----EACCREDLLRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGA 489 (652)
Q Consensus 414 g~~~~a~~~~~~~~~~~~~p~~~~~~~ll----~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 489 (652)
.+.+.+..++......... +..-+..+- ......+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 4566677776666544322 222221111 12223455566666666555543 2333333344445556777777
Q ss_pred HHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCCCccHHHHHHHHHHHHhcCCHHHHHHHHHHhhhC
Q 006281 490 LRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDVMLARSILSTFMISLCRRGHFLVATKLLRGLSSD 569 (652)
Q Consensus 490 ~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 569 (652)
...++.|... ........--+.+++...|+.+.|...|..+... ++ .|..|.. .+.|..-.. . ....+..
T Consensus 305 ~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~~-~-~~~~~~~ 374 (450)
T d1qsaa1 305 NTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--QRIGEEYEL-K-IDKAPQN 374 (450)
T ss_dssp HHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--HHTTCCCCC-C-CCCCCSC
T ss_pred HHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH--HHcCCCCCC-C-cCCCCcc
Confidence 7777666432 1112223334556677777777777777765431 12 3333322 122211000 0 0000000
Q ss_pred CCCc---hhHHHHHHHHhccccHHHHHHHHHHHHhcCCCCcHHHHHHHHHHhhcCCCCchHHHHHHH
Q 006281 570 LGHS---DSHVILLKSLADAREVEMAIEHIKWIQESSPTMLQEISAELFASLSSSSYPEPILLLLHA 633 (652)
Q Consensus 570 ~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 633 (652)
.... ..-...+..+...|+...|...+..+....+ ......++....+.|.++.|+....+
T Consensus 375 ~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~~---~~~~~~la~lA~~~g~~~~aI~a~~~ 438 (450)
T d1qsaa1 375 VDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKS---KTEQAQLARYAFNNQWWDLSVQATIA 438 (450)
T ss_dssp CCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC---HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCChhHHHHHHHH
Confidence 0000 0112344555666777777777766654321 22233356666677777777665554
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.045 Score=40.31 Aligned_cols=65 Identities=9% Similarity=-0.023 Sum_probs=53.4
Q ss_pred CchhHHHHHHHHhcc---ccHHHHHHHHHHHHhcCCCCc-HHHHHHHHHHhhcCCCCchHHHHHHHHHHc
Q 006281 572 HSDSHVILLKSLADA---REVEMAIEHIKWIQESSPTML-QEISAELFASLSSSSYPEPILLLLHALQEK 637 (652)
Q Consensus 572 ~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 637 (652)
...+....++++.++ .+.++++.+++++...+|... ...|. |+-+|.+.|++++|.++++++.+.
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~-Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYY-LTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHH-HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHcc
Confidence 455677888888765 567899999999999888765 34455 999999999999999999988765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.74 E-value=0.81 Score=33.07 Aligned_cols=65 Identities=9% Similarity=0.088 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhhCCC
Q 006281 471 KTYNILISKFSEVGEIEGALRLFHNMLEKGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVNHDV 536 (652)
Q Consensus 471 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 536 (652)
..+..-++....+|+-+.-.++++.+.+ .-+|++.....+..+|.+.|...++-+++.++-+.|.
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~k-n~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 3344445555555665555555555444 2344555555556666666666666666666555554
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.11 E-value=1.1 Score=32.48 Aligned_cols=140 Identities=8% Similarity=0.009 Sum_probs=87.7
Q ss_pred HHcCCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhC-CCccCcccHHHHHHHHHhcCcHHH
Q 006281 129 LIQGKNTQKAFSVFNEVKFNCEDIGPEICNSLLAVLASDGYIDNALKMFDEMSHR-GVEFSTIGFGVFIWKFCENAKLGQ 207 (652)
Q Consensus 129 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~ 207 (652)
+.-.|.+++..++..+...+. +..-||-++--....-+-+...++++.+-+. ++.|- ...-.++..+...+.
T Consensus 12 ~ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C-~Nlk~vv~C~~~~n~--- 84 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECGVINNT--- 84 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHHHHTTC---
T ss_pred HHHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhhcCchhh-hcHHHHHHHHHHhcc---
Confidence 445677888888888776642 5566777776666666666666666655332 11111 111222333322221
Q ss_pred HHHHHHHHHhccCCCCCchhhHHHHHHHHHccCCHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006281 208 VLSMLDEVRKRENSMINGSVIAVLIIHGFCKGKRVEEAFKVLDELRIRECKPDFIAYRIVAEEFKLMGSVFEREVVLKKK 287 (652)
Q Consensus 208 a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 287 (652)
........++...++|+-+.-.+++..+.+. -+|++...-.+..+|.+.|...++-+++.+.
T Consensus 85 -----------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 85 -----------------LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp -----------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 1334455667777888888888888887664 4567777778888888888888888888888
Q ss_pred HhcCCC
Q 006281 288 RKLGVA 293 (652)
Q Consensus 288 ~~~~~~ 293 (652)
-+.|++
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 777764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=91.88 E-value=5 Score=37.33 Aligned_cols=169 Identities=9% Similarity=-0.017 Sum_probs=100.3
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006281 345 DPRSAIVFFNFMIEKGRVPTLSTLSNLSKNLCKRNKSDELVEVYKVLSANDYFTDMESYNVMVSFLCTSGRLREAYGVIQ 424 (652)
Q Consensus 345 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~ 424 (652)
..+.+...+......+. +.......+......+++..+...+..+..... ......--+..++...|+.+.|...|.
T Consensus 267 ~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~~-~~~r~~YW~gRa~~~~G~~~~A~~~~~ 343 (450)
T d1qsaa1 267 VTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILH 343 (450)
T ss_dssp CCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred chHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcccc-cHHHHHHHHHHHHHHcCChhhHHHHHH
Confidence 34445555554443332 333334444555677888888888887754322 234455667788999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 425 EMKRKGLDPDVSFYNSLMEACCREDLLRPAKKLWDQMFASGC--SGNL----KTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 425 ~~~~~~~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
..... ++ |-.++.+ .+.|..-.. ..... .+.. ..-...+..+...|....|...|..+.+
T Consensus 344 ~~a~~---~~---fYG~LAa-~~Lg~~~~~-------~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~ 409 (450)
T d1qsaa1 344 QLMQQ---RG---FYPMVAA-QRIGEEYEL-------KIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (450)
T ss_dssp HHHTS---CS---HHHHHHH-HHTTCCCCC-------CCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHhcC---CC---hHHHHHH-HHcCCCCCC-------CcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHh
Confidence 88642 33 3333322 222321000 00000 0000 0011235567788999999999988875
Q ss_pred CCCCCCHhhHHHHHHHHHcCCCHHHHHHHHHHhhh
Q 006281 499 KGVAPDATTYTSLLEGLCQETNLQAAFEVFNKSVN 533 (652)
Q Consensus 499 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 533 (652)
. . +......+.....+.|.++.|+....+...
T Consensus 410 ~-~--~~~~~~~la~lA~~~g~~~~aI~a~~~~~~ 441 (450)
T d1qsaa1 410 S-K--SKTEQAQLARYAFNNQWWDLSVQATIAGKL 441 (450)
T ss_dssp T-C--CHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred C-C--CHHHHHHHHHHHHHCCChhHHHHHHHHHHc
Confidence 3 2 555666778888899999999988876543
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.49 E-value=1.9 Score=29.45 Aligned_cols=29 Identities=10% Similarity=0.296 Sum_probs=10.9
Q ss_pred CCCCHhhHHHHHHHHHcCCCHHHHHHHHH
Q 006281 501 VAPDATTYTSLLEGLCQETNLQAAFEVFN 529 (652)
Q Consensus 501 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 529 (652)
+.|++....+.+++|-+.+++..|+++|+
T Consensus 37 lVPeP~Ii~aALrAcRRvND~alAVR~lE 65 (105)
T d1v54e_ 37 LVPEPKIIDAALRACRRLNDFASAVRILE 65 (105)
T ss_dssp BCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33333333333333333333333333333
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.43 E-value=3 Score=28.44 Aligned_cols=48 Identities=8% Similarity=0.130 Sum_probs=27.6
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006281 451 LRPAKKLWDQMFASGCSGNLKTYNILISKFSEVGEIEGALRLFHNMLE 498 (652)
Q Consensus 451 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 498 (652)
.-+..+-++.+....+.|++....+-+.+|.+.+++..|+++|+..+.
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 334444555555555566666666666666666666666666665553
|