Citrus Sinensis ID: 006303
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 651 | 2.2.26 [Sep-21-2011] | |||||||
| Q8GYL7 | 852 | Pentatricopeptide repeat- | yes | no | 0.989 | 0.755 | 0.555 | 0.0 | |
| Q3ECK2 | 548 | Pentatricopeptide repeat- | no | no | 0.488 | 0.580 | 0.271 | 2e-27 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.592 | 0.516 | 0.244 | 3e-27 | |
| Q9S7Q2 | 862 | Pentatricopeptide repeat- | no | no | 0.554 | 0.418 | 0.235 | 6e-27 | |
| Q9SZ52 | 1112 | Pentatricopeptide repeat- | no | no | 0.674 | 0.394 | 0.234 | 8e-26 | |
| Q0WMY5 | 952 | Pentatricopeptide repeat- | no | no | 0.571 | 0.390 | 0.241 | 1e-25 | |
| Q8L844 | 709 | Pentatricopeptide repeat- | no | no | 0.576 | 0.528 | 0.224 | 3e-25 | |
| Q9LYZ9 | 819 | Pentatricopeptide repeat- | no | no | 0.609 | 0.484 | 0.242 | 3e-25 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.672 | 0.591 | 0.224 | 2e-24 | |
| Q9M9X9 | 987 | Pentatricopeptide repeat- | no | no | 0.568 | 0.374 | 0.240 | 2e-24 |
| >sp|Q8GYL7|PP361_ARATH Pentatricopeptide repeat-containing protein At5g02830, chloroplastic OS=Arabidopsis thaliana GN=At5g02830 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/662 (55%), Positives = 471/662 (71%), Gaps = 18/662 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AG 651
AG
Sbjct: 661 AG 662
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 166/339 (48%), Gaps = 21/339 (6%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLING---LCLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F S T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LFREMSQRG-------LVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
++P++VTY T++ G LHEV+ A+Y M + G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEG 500
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 124 bits (310), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 103/421 (24%), Positives = 196/421 (46%), Gaps = 35/421 (8%)
Query: 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293
KR++ A + + SPN++ +I G+ + +++ + ++ N+
Sbjct: 183 KRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVT 242
Query: 294 FNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVK 351
+N+L++ + ++ ++M G+ ++ SYN+++ C G +E+ +
Sbjct: 243 YNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRM---KEVSFVLT 299
Query: 352 HLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411
+ +G LD TY+T++K + + AL + +ML G+TP+ IT++SLI++ A
Sbjct: 300 EMNRRGY-SLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKA 358
Query: 412 GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT---LSKTQVAL 468
G + +AM ++M G PN + L+ + + A+R+ R S + V
Sbjct: 359 GNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTY 418
Query: 469 GEDYDGN------TDRISNMEHKDKQSITNTPNFVPNSH-YSSFDKRF------------ 509
+G+ D I+ +E ++ + +P+ V S S F + +
Sbjct: 419 NALINGHCVTGKMEDAIAVLEDMKEKGL--SPDVVSYSTVLSGFCRSYDVDEALRVKREM 476
Query: 510 ---SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
KP T TY+ L++ C +A L EM VGL P+ ++T LI+A G++
Sbjct: 477 VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDL 536
Query: 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624
E ALQ+ M E G+ PDVV Y+ I + R ++A L ++ + + P+ VTY TL
Sbjct: 537 EKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTL 596
Query: 625 L 625
+
Sbjct: 597 I 597
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9S7Q2|PP124_ARATH Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana GN=PTAC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 122 bits (307), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 98/417 (23%), Positives = 184/417 (44%), Gaps = 56/417 (13%)
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
G++ L L +D S +++ +I+ G G Y S + + ++++ ++ +
Sbjct: 151 LGREGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSLELLDRMKNEKISPS 210
Query: 291 IYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
I +N+++N A D + L ++ M+ G+ D+ +YN LL AC + G L E
Sbjct: 211 ILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDIVTYNTLLSACAIRG---LGDEAE 267
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
+ + G++ D+ TYS +V+ F + + + +M S G P+ +++ L+ A
Sbjct: 268 MVFRTMNDGGIVP-DLTTYSHLVETFGKLRRLEKVCDLLGEMASGGSLPDITSYNVLLEA 326
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
A +G +++AM +F +M AGC PN+ ++LL ++ ++D +LF S
Sbjct: 327 YAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVRQLFLEMKSS----- 381
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
NTD P TYNIL++
Sbjct: 382 -------NTD-----------------------------------PDAATYNILIEVFGE 399
Query: 528 DYY--RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVA 585
Y V L ++M + P+ ++ +I ACG G E A +IL+ M + + P A
Sbjct: 400 GGYFKEVVTLFHDMVEENIEPDMETYEGIIFACGKGGLHEDARKILQYMTANDIVPSSKA 459
Query: 586 YTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642
YT I+ ++ ++A F M P++ T+ +LL + +R G + E + L+
Sbjct: 460 YTGVIEAFGQAALYEEALVAFNTMHEVGSNPSIETFHSLLYSFARGGLVKESEAILS 516
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Involved in plastid gene expression. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850, chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 126/538 (23%), Positives = 233/538 (43%), Gaps = 99/538 (18%)
Query: 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP--------LELFDGSG-----FKLL 158
SL+ +S +V + ID V+G+LK++ LG+ P + + +G +++L
Sbjct: 222 SLQTYSSLMVGLGKRRDIDSVMGLLKEMETLGLKPNVYTFTICIRVLGRAGKINEAYEIL 281
Query: 159 KNECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELD---EEFRIVQLCVNKPDVNLAIR 212
K R+ D G +V + L++ L ++LD E F ++ +KPD +
Sbjct: 282 K----RMDDEGCGPDVVTYTVLIDAL----CTARKLDCAKEVFEKMKTGRHKPD---RVT 330
Query: 213 YACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272
Y ++ R F RDL S + + +K P++ ++D G++
Sbjct: 331 YITLLDR-----------FSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNF 379
Query: 273 MKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNIL 330
++ + +R Q + N++ +N+L+ + H L LE++ NM+ LGV +Y +
Sbjct: 380 GEAFDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNMESLGVKPTAYTYIVF 439
Query: 331 LKACCLAGNTVLAQEIYGEVKHLE-AKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389
+ +G++V A E + ++K A ++ + YS + K D + Q+ +K+
Sbjct: 440 IDYYGKSGDSVSALETFEKMKTKGIAPNIVACNASLYS-LAKAGRDREAKQIFYGLKD-- 496
Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
G+ P+++T++ ++ + G +++A+ L EM++ GCEP+ N L+ +A +
Sbjct: 497 --IGLVPDSVTYNMMMKCYSKVGEIDEAIKLLSEMMENGCEPDVIVVNSLINTLYKADRV 554
Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509
D A+++F K
Sbjct: 555 DEAWKMFMRM-----------------------------------------------KEM 567
Query: 510 SFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567
KPT TYN L+ + +A L M G PN I++ L D + V A
Sbjct: 568 KLKPTVVTYNTLLAGLGKNGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLA 627
Query: 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625
L++L M + G PDV Y T I V++ ++K+A F +MK + P+ VT TLL
Sbjct: 628 LKMLFKMMDMGCVPDVFTYNTIIFGLVKNGQVKEAMCFFHQMKKL-VYPDFVTLCTLL 684
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Plays a role in the stabilization of the primary polycistronic transcript of the petL operon encoding subunits of the cytochrome b6-f complex. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 97/401 (24%), Positives = 180/401 (44%), Gaps = 29/401 (7%)
Query: 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKNM 315
I T++D + D K +++ L+ T + + L+N+ K + LEV + M
Sbjct: 451 IYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVM 510
Query: 316 QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375
++ GV ++ +Y++++ + A ++ ++ K +K DV Y+ I+ F
Sbjct: 511 KEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPDVILYNNIISAFCG 566
Query: 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435
A++ ++M P T T+ +I+ A +G + +++ +F+ M + GC P
Sbjct: 567 MGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFDMMRRCGCVPTVHT 626
Query: 436 CNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH---KDKQSITN 492
N L+ VE Q ++A + TL+ +S EH K Q +
Sbjct: 627 FNGLINGLVEKRQMEKAVEILDEMTLAG---------------VSANEHTYTKIMQGYAS 671
Query: 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHIS 550
+ Y + + TY L+KACC AL EM + N
Sbjct: 672 VGDTGKAFEYFTRLQNEGLDVDIFTYEALLKACCKSGRMQSALAVTKEMSARNIPRNSFV 731
Query: 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
+ ILID G+V A +++ M+++G+ PD+ YT+ I C ++ + +A EEM+
Sbjct: 732 YNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMNRATQTIEEME 791
Query: 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
++PN+ TY TL++ +R SL E + L+ Y++M G
Sbjct: 792 ALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMG 829
|
May play a role in the plastid ribosome biogenesis. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8L844|PP413_ARATH Pentatricopeptide repeat-containing protein At5g42310, mitochondrial OS=Arabidopsis thaliana GN=At5g42310 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/468 (22%), Positives = 194/468 (41%), Gaps = 93/468 (19%)
Query: 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282
L + + F K D AL+ ++ S +II G +++ A++E+L
Sbjct: 271 LVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLVSIISALADSGRTLEAEALFEEL 330
Query: 283 RSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340
R + +N+L+ V LK + M+K GV D +Y++L+ A AG
Sbjct: 331 RQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVNAGRW 390
Query: 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400
A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P+
Sbjct: 391 ESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKPDRQF 446
Query: 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
++ +I+ ++ AM F+ ML G EP+ N L+ C+ R
Sbjct: 447 YNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLIDC---HCKHGR--------- 494
Query: 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNI 520
+ V + + ++R P TTYNI
Sbjct: 495 ----------------------------------HIVAEEMFEAMERRGCL-PCATTYNI 519
Query: 521 LMKACCTD--YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL------- 571
++ + + +K L+ +M++ G+ PN ++ T L+D G SG A++ L
Sbjct: 520 MINSYGDQERWDDMKRLLGKMKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVG 579
Query: 572 ----------------------------KIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++M DG+ P ++A + I +R +AF
Sbjct: 580 LKPSSTMYNALINAYAQRGLSEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAF 639
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
++ + MK ++P++VTY TL++A R + + Q+ VY++M +G
Sbjct: 640 AVLQYMKENGVKPDVVTYTTLMKALIR---VDKFQKVPVVYEEMIMSG 684
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LYZ9|PP362_ARATH Pentatricopeptide repeat-containing protein At5g02860 OS=Arabidopsis thaliana GN=At5g02860 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 103/425 (24%), Positives = 189/425 (44%), Gaps = 28/425 (6%)
Query: 231 FGKKRDLVSALRAYD---ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
F KK DL ALRA+D K + S + + II + G G + ++ L+
Sbjct: 147 FHKKFDL--ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204
Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
+L++Y + SL++ A+ ++ + V+K M++ G + +YN++L G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTP--WNK 262
Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
I V+ +++ G+ D +TY+T++ Q A +V E+M +AG + + +T+++L+
Sbjct: 263 ITSLVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321
Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
+ + ++AM + EM+ G P+ N L+ A D A L T+
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381
Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK 523
D T +S E K S S F+ + KP T+N +K
Sbjct: 382 ----PDVFTYTTLLSGFERAGKVE----------SAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP 581
+ + + +E+ GLSP+ ++W L+ G +G + K M+ G P
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 487
Query: 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641
+ + T I R +QA +++ M + P+L TY T+L A +R G + ++ L
Sbjct: 488 ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
Query: 642 AVYQD 646
A +D
Sbjct: 548 AEMED 552
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 108/481 (22%), Positives = 201/481 (41%), Gaps = 43/481 (8%)
Query: 194 EFRIVQLCVNKPDVNLAIRYACIVPRAD------------------ILFCNFVREFGKKR 235
EF V +C N N+ I + C + R I + V + +
Sbjct: 236 EFPEVGVCWNVASYNIVIHFVCQLGRIKEAHHLLLLMELKGYTPDVISYSTVVNGYCRFG 295
Query: 236 DLVSALRAYDASKKHLSSPNMYICRTIIDV-CGICGDYMKSRAIYEDLRSQNVTLNIYVF 294
+L + + K+ PN YI +II + C IC A E +R Q + + V+
Sbjct: 296 ELDKVWKLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIR-QGILPDTVVY 354
Query: 295 NSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
+L++ D++ + + M + D+ +Y ++ C G+ V A +++ E
Sbjct: 355 TTLIDGFCKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHE--- 411
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+ KG L+ D T++ ++ + A + A +V M+ AG +PN +T+++LI+ G
Sbjct: 412 MFCKG-LEPDSVTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEG 470
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472
++ A L EM + G +PN N ++ ++ + A +L V E
Sbjct: 471 DLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKL----------VGEFEAA 520
Query: 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD--YY 530
N D ++ D + + K +PT T+N+LM C
Sbjct: 521 GLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGK--GLQPTIVTFNVLMNGFCLHGMLE 578
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
+ L+N M G++PN ++ L+ N++ A I K M G+ PD Y +
Sbjct: 579 DGEKLLNWMLAKGIAPNATTFNSLVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLV 638
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650
K +++ +K+A+ LF+EMK ++ TY L++ + E ++ V+ M +
Sbjct: 639 KGHCKARNMKEAWFLFQEMKGKGFSVSVSTYSVLIKGFLKRKKFLEARE---VFDQMRRE 695
Query: 651 G 651
G
Sbjct: 696 G 696
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M9X9|PPR18_ARATH Pentatricopeptide repeat-containing protein At1g06710, mitochondrial OS=Arabidopsis thaliana GN=At1g06710 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 110/458 (24%), Positives = 184/458 (40%), Gaps = 88/458 (19%)
Query: 243 AYDASKKHLSSPNM--YICRTIIDVCGICGDYMK--------SRAIYEDLRSQNVTLNIY 292
AY KK + +M Y+ I+ + ICGD + Y ++ + V LN
Sbjct: 391 AYKLLKKMVKCGHMPGYVVYNIL-IGSICGDKDSLNCDLLDLAEKAYSEMLAAGVVLNKI 449
Query: 293 VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
+S +A + V + M G + D ++Y+ +L C A LA ++ E+
Sbjct: 450 NVSSFTRCLCSAGKYEKAFSVIREMIGQGFIPDTSTYSKVLNYLCNASKMELAFLLFEEM 509
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
K +G L DV+TY+ +V F A + A K +M G TPN +T+++LI+A
Sbjct: 510 K----RGGLVADVYTYTIMVDSFCKAGLIEQARKWFNEMREVGCTPNVVTYTALIHAYLK 565
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
A V A LFE ML GC PN + L+ +A Q ++A ++F SK
Sbjct: 566 AKKVSYANELFETMLSEGCLPNIVTYSALIDGHCKAGQVEKACQIFERMCGSK------- 618
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ P+ + ++ +D S +P TY L+ C +
Sbjct: 619 ---------------------DVPDV--DMYFKQYDDN-SERPNVVTYGALLDGFCKSHR 654
Query: 531 --RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM--------- 579
+ L++ M G PN I + LID G ++ A ++ M E G
Sbjct: 655 VEEARKLLDAMSMEGCEPNQIVYDALIDGLCKVGKLDEAQEVKTEMSEHGFPATLYTYSS 714
Query: 580 --------------------------SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613
+P+VV YT I + + +A+ L + M+
Sbjct: 715 LIDRYFKVKRQDLASKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMQMMEEKG 774
Query: 614 IQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
QPN+VTY ++ +G + +++ CL + + M G
Sbjct: 775 CQPNVVTYTAMIDG---FGMIGKIETCLELLERMGSKG 809
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 651 | ||||||
| 225439759 | 842 | PREDICTED: pentatricopeptide repeat-cont | 0.921 | 0.712 | 0.631 | 0.0 | |
| 224068636 | 828 | predicted protein [Populus trichocarpa] | 0.920 | 0.723 | 0.625 | 0.0 | |
| 449448705 | 849 | PREDICTED: pentatricopeptide repeat-cont | 0.986 | 0.756 | 0.591 | 0.0 | |
| 30679784 | 852 | pentatricopeptide repeat-containing prot | 0.989 | 0.755 | 0.555 | 0.0 | |
| 39104565 | 852 | unknown protein [Arabidopsis thaliana] | 0.989 | 0.755 | 0.555 | 0.0 | |
| 449521499 | 855 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.989 | 0.753 | 0.581 | 0.0 | |
| 255568444 | 786 | pentatricopeptide repeat-containing prot | 0.820 | 0.679 | 0.613 | 0.0 | |
| 356572391 | 811 | PREDICTED: pentatricopeptide repeat-cont | 0.937 | 0.752 | 0.540 | 0.0 | |
| 357510555 | 829 | Pentatricopeptide repeat-containing prot | 0.867 | 0.681 | 0.561 | 0.0 | |
| 7413558 | 798 | putative protein [Arabidopsis thaliana] | 0.890 | 0.726 | 0.520 | 1e-175 |
| >gi|225439759|ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic [Vitis vinifera] gi|297741486|emb|CBI32618.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 771 bits (1991), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/614 (63%), Positives = 475/614 (77%), Gaps = 14/614 (2%)
Query: 40 LASSSSLSSIPTVHS--SQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESV 97
L +S+S P + S S+ LLS VR DL++ Y+D+A+KL +DGR ++F+ + E++
Sbjct: 36 LLTSTSARLSPPISSLRSRHPLLSDVRWDLNN----YSDLATKLVQDGRFDDFSTMAETL 91
Query: 98 VVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157
++S +S+ +E+V++GI +REGR+ CVV VL+K+++LG+ PLELFDGS +L
Sbjct: 92 ILSGVELSQL-----VELVSAGISGLLREGRVYCVVEVLRKVDKLGICPLELFDGSTLEL 146
Query: 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217
L EC+R+L+ G+VE V L+E+L+ F PVK+L E +++CVNK + NLA+RYACI+
Sbjct: 147 LSKECRRILNCGQVEEVVELIEILDGFHFPVKKLLEPLDFIKICVNKRNPNLAVRYACIL 206
Query: 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277
P A ILFC + EFGKKRDL SAL A++ASK+ L PNMY RT+IDVCG+C Y KSR
Sbjct: 207 PHAQILFCTIIHEFGKKRDLGSALTAFEASKQKLIGPNMYCYRTMIDVCGLCSHYQKSRY 266
Query: 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337
IYE+L +Q +T NIYVFNSLMNVN HDL +T VYKNMQ LGV ADMASYNILLKACC+A
Sbjct: 267 IYEELLAQKITPNIYVFNSLMNVNVHDLSYTFNVYKNMQNLGVTADMASYNILLKACCVA 326
Query: 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397
G LAQEIY EV++LE+ G+LKLDVFTYSTI+KVFADAK WQMALK+KEDMLSAGV PN
Sbjct: 327 GRVDLAQEIYREVQNLESNGMLKLDVFTYSTIIKVFADAKLWQMALKIKEDMLSAGVIPN 386
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457
T+TWS+LI++CANAG+ EQA+ LF+EML AGCEPNSQC NILL ACVEACQ+DRAFRLF+
Sbjct: 387 TVTWSALISSCANAGITEQAIQLFKEMLLAGCEPNSQCYNILLHACVEACQYDRAFRLFQ 446
Query: 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT 517
SW S+ Q +E K + IT+ PN + NSH+ SF K F F PTTTT
Sbjct: 447 SWKDSRFQEI---SGGTGNGNTVGVELKHQNCITSMPNCLSNSHHLSFSKSFPFTPTTTT 503
Query: 518 YNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
YNILMKAC TDYYR KALM+EM+T GLSPNHISW+ILID CGG+GN+ GA++ILK MRE
Sbjct: 504 YNILMKACGTDYYRAKALMDEMKTAGLSPNHISWSILIDICGGTGNIVGAVRILKTMREA 563
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEV 637
G+ PDVVAYTTAIK CV SK LK AFSLF EMK YQIQPNLVTY TLLRARSRYGSLHEV
Sbjct: 564 GIKPDVVAYTTAIKYCVESKNLKIAFSLFAEMKRYQIQPNLVTYNTLLRARSRYGSLHEV 623
Query: 638 QQCLAVYQDMWKAG 651
QQCLA+YQ M KAG
Sbjct: 624 QQCLAIYQHMRKAG 637
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224068636|ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 758 bits (1958), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/608 (62%), Positives = 454/608 (74%), Gaps = 9/608 (1%)
Query: 49 IPTVHSSQTALLSTV----RRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNV 104
IP VHS LLST+ + SS DY+A++ASKLA+DGRL++F MI ESV+ S
Sbjct: 45 IPAVHSRSPPLLSTIPFRQNHNSSSLLDYHANLASKLAEDGRLQDFVMIAESVIASGVEP 104
Query: 105 SKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQR 164
S F + LS+ VA GI K++++G +DCVV LKK ELGV+ L+ DG LLK E R
Sbjct: 105 SSFVAALSVGPVAKGISKNLQQGNVDCVVRFLKKTEELGVSTLKFLDGVAIDLLKKEFIR 164
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-RADIL 223
+++ G+VE V +ME L F KEL + I+++CV+K + +A+RYA I P IL
Sbjct: 165 IVNCGDVEQVVYIMETLAGFCFSFKELVDPSYIIKICVDKLNPKMAVRYAAIFPGEGRIL 224
Query: 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR 283
FCN + EFG+K L SAL AYD +K LS PNMY+ RTIIDVCG+CGDYMKSR IYEDL
Sbjct: 225 FCNIISEFGRKGHLDSALVAYDEAKHKLSVPNMYLHRTIIDVCGLCGDYMKSRYIYEDLI 284
Query: 284 SQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343
++ V N+YVFNSLMNVNAHDL +T V+KNMQ LGV AD+ASYNILLKACC+AG LA
Sbjct: 285 NRKVIPNVYVFNSLMNVNAHDLGYTFSVFKNMQNLGVTADVASYNILLKACCIAGRVDLA 344
Query: 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403
++IY EVK LE+ VLKLDVFTY IVK+FADAK WQMALK+KEDMLS+GVTPN WSS
Sbjct: 345 KDIYREVKQLESAEVLKLDVFTYCMIVKIFADAKMWQMALKIKEDMLSSGVTPNMHIWSS 404
Query: 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463
LI+ACANAGLVEQA+ LFEEML +GC+PNSQCCNILL ACV+ACQ+DRAFRLF+ W S+
Sbjct: 405 LISACANAGLVEQAIQLFEEMLLSGCKPNSQCCNILLHACVQACQYDRAFRLFQCWKGSE 464
Query: 464 TQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523
Q D+ GN D I EH K N VPNSH+ +F K+F F PT TY++LMK
Sbjct: 465 AQEVFHGDHSGNADEI---EHAQKHC-PNMTTIVPNSHHLNFIKKFPFTPTPATYHMLMK 520
Query: 524 ACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
AC +DY+R KALM+EM+TVG+SPNHISW+ILID CG SGNV GA+QILK MR G+ PDV
Sbjct: 521 ACGSDYHRAKALMDEMKTVGISPNHISWSILIDICGVSGNVSGAVQILKNMRMAGVEPDV 580
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643
VAYTTAIKVCV +K LK AFSLF EMK QI PNLVTY TLLRAR+RYGSL EVQQCLA+
Sbjct: 581 VAYTTAIKVCVETKNLKLAFSLFAEMKRCQINPNLVTYNTLLRARTRYGSLREVQQCLAI 640
Query: 644 YQDMWKAG 651
YQDM KAG
Sbjct: 641 YQDMRKAG 648
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449448705|ref|XP_004142106.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 733 bits (1891), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/663 (59%), Positives = 485/663 (73%), Gaps = 21/663 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNV N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVIPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNT--PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD 528
+ +TD +N++ + NT PN + H SF F+FKPT TTYNILMKAC TD
Sbjct: 474 ERKSSTD--NNLDADSTSQLCNTKMPNAPSHVHQISFVGNFAFKPTITTYNILMKACGTD 531
Query: 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588
YY KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTT
Sbjct: 532 YYHAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTT 591
Query: 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648
AIKVCV K K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+YQDM
Sbjct: 592 AIKVCVEGKNWKLAFSLFEEMKRFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIYQDMR 651
Query: 649 KAG 651
K+G
Sbjct: 652 KSG 654
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30679784|ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g02830, chloroplastic; Flags: Precursor gi|332003140|gb|AED90523.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1877), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/662 (55%), Positives = 471/662 (71%), Gaps = 18/662 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AG 651
AG
Sbjct: 661 AG 662
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|39104565|dbj|BAC42187.2| unknown protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/662 (55%), Positives = 471/662 (71%), Gaps = 18/662 (2%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNS-SFTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIRYAC++P ++L C + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFG 243
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 244 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 303
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 304 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 363
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 364 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 423
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 424 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 483
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 484 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 540
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 541 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 600
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
IK+C +K LK AFSLFEEM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM
Sbjct: 601 IKICAENKCLKLAFSLFEEMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRN 660
Query: 650 AG 651
AG
Sbjct: 661 AG 662
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449521499|ref|XP_004167767.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 388/667 (58%), Positives = 481/667 (72%), Gaps = 23/667 (3%)
Query: 1 MRV--VFGSSSSSSSAIVATQTRLYNHRN-KPNKHPVTKLFPLASSSSLSSIPTVHSSQT 57
MRV + GSSS+S + R Y H + K K ++ L P + SS + S
Sbjct: 1 MRVFLILGSSSASIAG-----PRRYRHSHCKAPKSSLSNLSPTGTHLPFSSHTSTRHSPP 55
Query: 58 ALLSTVRRDLSSRN-------DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASM 110
ALLS+V D++ + +YA +ASKLA+ G+LE+FAM+VESVVV+ S+F +M
Sbjct: 56 ALLSSVELDIAGASSGGRIPIQHYAGVASKLAEGGKLEDFAMVVESVVVAGVEPSQFGAM 115
Query: 111 LSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGE 170
L++E+VA GI + +REG++ VV VL+K+ ELG++ LEL D + L+ +C+R+ SGE
Sbjct: 116 LAVELVAKGISRCLREGKVWSVVQVLRKVEELGISVLELCDEPAVESLRRDCRRMAKSGE 175
Query: 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230
+E V LMEVL F V+E+ + +++LCV+ + +AIRYA I+P ADILFC + E
Sbjct: 176 LEELVELMEVLSGFGFSVREMMKPSEVIKLCVDYRNPKMAIRYASILPHADILFCTTINE 235
Query: 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN 290
FGKKRDL SA AY SK +++ NMYI RTIIDVCG+CGDY KSR IY+DL +QNVT N
Sbjct: 236 FGKKRDLKSAYIAYTESKANMNGSNMYIYRTIIDVCGLCGDYKKSRNIYQDLVNQNVTPN 295
Query: 291 IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEV 350
I+VFNSLMNVNAHDL +T ++YKNMQ LGV ADMASYNILLKACCLAG LAQ+IY EV
Sbjct: 296 IFVFNSLMNVNAHDLNYTFQLYKNMQNLGVPADMASYNILLKACCLAGRVDLAQDIYREV 355
Query: 351 KHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
KHLE GVLKLDVFTYSTIVKVFADAK W+MAL+VKEDM SAGV+PN +TWSSLI++CAN
Sbjct: 356 KHLETTGVLKLDVFTYSTIVKVFADAKLWKMALRVKEDMQSAGVSPNMVTWSSLISSCAN 415
Query: 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGE 470
+GLVE A+ LFEEM+ AGCEPN+QCCN LL ACVE QFDRAFRLFRSW + ++ G
Sbjct: 416 SGLVELAIQLFEEMVSAGCEPNTQCCNTLLHACVEGRQFDRAFRLFRSW--KEKELWDGI 473
Query: 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYY 530
+ +TD + + + T PN + H SF +FKPT TTYNILMKAC TDYY
Sbjct: 474 ERKSSTDNNLDADSTSQLCTTKMPNAPSHVHQISFVGNLAFKPTITTYNILMKACGTDYY 533
Query: 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAI 590
KALM EM++VGL+PNHISW+IL+D CG S +VE A+QIL MR G+ PDVVAYTTAI
Sbjct: 534 HAKALMEEMKSVGLTPNHISWSILVDICGRSHDVESAVQILTTMRMAGVDPDVVAYTTAI 593
Query: 591 KVCVRSKRL------KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644
KV + L K AFSLFEEMK ++IQPNLVTY TLLRARS YGSLHEVQQCLA+Y
Sbjct: 594 KVSIPLAVLVLKXNWKLAFSLFEEMKGFEIQPNLVTYSTLLRARSTYGSLHEVQQCLAIY 653
Query: 645 QDMWKAG 651
QDM K+G
Sbjct: 654 QDMRKSG 660
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255568444|ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223535493|gb|EEF37162.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 692 bits (1785), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 334/544 (61%), Positives = 409/544 (75%)
Query: 108 ASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167
+S L + +A GI K++RE +D VV L ++LG+ P +LFD + LLK EC R+++
Sbjct: 41 SSGLHMIALAKGISKNLRERNVDSVVDALNTADQLGLPPSQLFDAASMDLLKTECLRIVN 100
Query: 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227
G +E + LME L + +KEL E R+++LCV++ + +LA+RYA + P IL C+
Sbjct: 101 FGRLEDIILLMETLAGYSFSIKELVEPSRVIKLCVHQRNPHLAVRYARLFPHEGILMCSI 160
Query: 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
V++FGKK DL SAL AY+A +H + P+MY+ R +IDVCG+CGDYM+SR I+ED+ SQ V
Sbjct: 161 VKQFGKKGDLDSALAAYEAYMQHSTVPDMYLYRALIDVCGLCGDYMQSRYIFEDIVSQKV 220
Query: 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347
NI+VFNSLMNVNAHDL +TL VYK MQ LGV ADM SYNILLK+C LAG LAQ+IY
Sbjct: 221 IPNIFVFNSLMNVNAHDLGYTLHVYKKMQNLGVTADMTSYNILLKSCSLAGKVDLAQDIY 280
Query: 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA 407
E K LE G+LKLD FTY TI+K+FADAK WQ+ALK+KEDMLS+GVTPNT TWSSLI+A
Sbjct: 281 REAKQLELAGLLKLDDFTYCTIIKIFADAKLWQLALKIKEDMLSSGVTPNTFTWSSLISA 340
Query: 408 CANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467
ANAGLV+QA+ LFEEML AGC PNS CCNILL ACVEACQ+DRAFRLF +W S+ Q
Sbjct: 341 SANAGLVDQAIKLFEEMLLAGCVPNSHCCNILLHACVEACQYDRAFRLFNAWKGSEIQNT 400
Query: 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527
DY+ D IS+ H + I PN NS + SF K+F F P++ TYN LMKAC +
Sbjct: 401 FTTDYNCPVDDISSAMHACEDYIITVPNLASNSLHLSFLKKFPFTPSSATYNTLMKACGS 460
Query: 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587
DY R KALM+EM+ VGLSPNHISW+ILID CG SGN+EGA+QILK MR G+ PDV+AYT
Sbjct: 461 DYNRAKALMDEMQAVGLSPNHISWSILIDICGSSGNMEGAIQILKNMRMAGIEPDVIAYT 520
Query: 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
TAIKV V SK LK AFSLF EMK YQ++PNLVTY TLLRAR+RYGSL EVQQCLA+YQDM
Sbjct: 521 TAIKVSVESKNLKMAFSLFAEMKRYQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDM 580
Query: 648 WKAG 651
KAG
Sbjct: 581 RKAG 584
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572391|ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/651 (54%), Positives = 445/651 (68%), Gaps = 41/651 (6%)
Query: 3 VVFGSSSSSSSAIVATQTRLYNHRNKPNKHP-VTKLFPLASSSSLSSIPTVHSSQTALLS 61
V+ GSS + + +T + H KP P + KL P +S+ ++S AL
Sbjct: 5 VILGSSVVTPFSSSSTPHHQHRHPIKPPHKPSLPKLAPFSSNWNIS---------CAL-- 53
Query: 62 TVRRDLSSRNDYYADMASKLAKDGRL-EEFAMIVESVVVSEGNVSKFASMLSLEMVASGI 120
A +A D +L +EF ++ E + S ++ E++A +
Sbjct: 54 ------------QAPLALSHCADSKLVQEFEVVFEDFIDS--------GVVDAELLAKVV 93
Query: 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEV 180
+ IR ++ V+ L K+ ++ +GS ++ EC RL+ VE V LMEV
Sbjct: 94 LLGIRGKKVRSVIHALNKVQGRRISLSTHLNGS--DIIAKECCRLVTCSHVEEAVELMEV 151
Query: 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSA 240
L F++ ++EL + I++ CV + LA+RYAC++P A ILFCN + EFGK+RDLVSA
Sbjct: 152 LARFQISIRELVQPSDIIKRCVLSRNPILAVRYACLLPHAHILFCNIISEFGKRRDLVSA 211
Query: 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300
L+AY+ASKKHL++PNMYI R ID CG+C DYMKSR IYEDL +Q +T NIYVFNSLMNV
Sbjct: 212 LKAYEASKKHLNTPNMYIYRATIDTCGLCRDYMKSRYIYEDLLNQKITPNIYVFNSLMNV 271
Query: 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360
N+HDL +TL +Y+NMQ LG+ DM SYNILLKACC+AG LAQ+IY E+KHLE+ G LK
Sbjct: 272 NSHDLSYTLNLYQNMQNLGLKPDMTSYNILLKACCVAGRVDLAQDIYRELKHLESVGQLK 331
Query: 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420
LDVFTYSTI+KVFAD K WQMALK+K+DMLSAGV+ N + WSSLINACA+AGLVEQA+ L
Sbjct: 332 LDVFTYSTIIKVFADVKLWQMALKIKQDMLSAGVSLNIVAWSSLINACAHAGLVEQAIQL 391
Query: 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480
FEEML AGCEPN+QC NI+L ACVEA Q+DRAFR F SW K + GE Y+ S
Sbjct: 392 FEEMLLAGCEPNTQCFNIILNACVEAYQYDRAFRFFHSWKGKKMLGSSGEGYN------S 445
Query: 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMR 540
N+ +T+ PN + NSH +F +RF F PTTTTYNIL+KAC TDYY KAL+ EM
Sbjct: 446 NIGQGHMHDVTSIPNGISNSHILNFAERFPFTPTTTTYNILLKACGTDYYHAKALIKEME 505
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
TVGLSPN ISW+ILID CG S NVEGA++ILK M + G+ PDV+AYTTAIKVCV SK
Sbjct: 506 TVGLSPNQISWSILIDICGASSNVEGAIEILKTMGDAGIKPDVIAYTTAIKVCVESKNFM 565
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
QA +L+EEMK YQI+PN VTY TLL+ARS+YG LHEVQQCLA+YQDM KAG
Sbjct: 566 QALTLYEEMKCYQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAG 616
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357510555|ref|XP_003625566.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355500581|gb|AES81784.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 645 bits (1665), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/586 (56%), Positives = 421/586 (71%), Gaps = 21/586 (3%)
Query: 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125
+LS RN+ + + + L L+EF ++ + S+ +V E++A+ ++ I+
Sbjct: 40 NLSPRNNSTSLLQTPLI----LKEFETVLHGELDSDVDV---------ELLANAVLIGIQ 86
Query: 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185
+ + V+ L K+ G++ + L + NEC ++ G +E V LMEVL F+
Sbjct: 87 DRNVRTVIDSLNKVE--GLSEISLSTHLDASAIANECCHMVTCGHIEEAVELMEVLSRFQ 144
Query: 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD 245
L + +L + I++ C+ LA+RYA ++P+A +LFC+ + EF K+RDLVSAL+AYD
Sbjct: 145 LSIAKLVQPSDIIKRCILSRKPTLAVRYASLLPQAPVLFCSIISEFSKRRDLVSALKAYD 204
Query: 246 ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305
A KK+L PNMYI R IID CG+CGD+MKSR IYEDL +Q +T NIYVFNSLMNVNAHDL
Sbjct: 205 ALKKNLKGPNMYIYRAIIDACGLCGDFMKSRYIYEDLLNQKITPNIYVFNSLMNVNAHDL 264
Query: 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365
++L +Y+NMQKLG+ DMASYNILLKACC+AG +AQ++Y ++KHLE+ G LKLDVFT
Sbjct: 265 SYSLNLYQNMQKLGLKPDMASYNILLKACCVAGRVDVAQDMYRDLKHLESVGQLKLDVFT 324
Query: 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425
YSTI+KVFADAK WQMALK+K DMLSAGV+ NTI WSSLINACA+AGLVEQA+ LFEEML
Sbjct: 325 YSTIIKVFADAKLWQMALKIKRDMLSAGVSLNTIAWSSLINACAHAGLVEQAIQLFEEML 384
Query: 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHK 485
AGCEPN+QC NI+L ACVE CQ+DRAFRLF SW SK V L E + SN E
Sbjct: 385 LAGCEPNTQCFNIILHACVEGCQYDRAFRLFHSWKGSKMLVPLDESCN------SNSEQG 438
Query: 486 DKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS 545
++T P + +SH SF +RF F PTTTTYNIL+KAC T+YY KAL+NEMRTVGLS
Sbjct: 439 GMHNVTTVPTGISSSHILSFTERFPFTPTTTTYNILLKACGTNYYHAKALINEMRTVGLS 498
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN ISW+ILI+ CG S NV+G ++IL+ M + G+ PDV++YTTAIKVCV SK QA +L
Sbjct: 499 PNQISWSILINICGASENVDGVIEILRTMVDAGIKPDVISYTTAIKVCVESKNFTQALTL 558
Query: 606 FEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
+ EMK Y PNLVTY TLLRARS+YGSL EVQQ LA+YQDM KAG
Sbjct: 559 YREMKSYGTHPNLVTYNTLLRARSKYGSLREVQQGLAIYQDMRKAG 604
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|7413558|emb|CAB86037.1| putative protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 327/628 (52%), Positives = 420/628 (66%), Gaps = 48/628 (7%)
Query: 3 VVFGSSSSSSSAIVATQTRLY------NHRNKPNKHPVTKLFP---LASSSSLSSIPTVH 53
+VFGSSS+ ++ R Y N + K N TKL P S S +S+ H
Sbjct: 6 IVFGSSSAITNP-HHHHRRCYATAPESNRKTKSNSS-FTKLLPSLPQQHSPSPASVSATH 63
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLS 112
S + + VR +YYAD ASKLA+DGR+E+ A+I E++ G NV++FASM+
Sbjct: 64 SLSSHFSNVVRWIPDGSLEYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVD 123
Query: 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVE 172
++++ GI ++R+G+I+ VV LK++ ++G+APL+L D S KL++ + + + +S +VE
Sbjct: 124 YDLLSKGISSNLRQGKIESVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVE 183
Query: 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232
+ LME+L +KEL + F +V+ CV + LAIR + FG
Sbjct: 184 KAIDLMEILAGLGFKIKELVDPFDVVKSCVEISNPQLAIR--------------IIHGFG 229
Query: 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY 292
KK D+VS + AY+A K+ L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIY
Sbjct: 230 KKGDMVSVMTAYEACKQILDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIY 289
Query: 293 VFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352
V NSLMNVN+HDL +TL+VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K
Sbjct: 290 VINSLMNVNSHDLGYTLKVYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKR 349
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
+E+ G+LKLD FTY TI+KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAG
Sbjct: 350 MESSGLLKLDAFTYCTIIKVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAG 409
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED- 471
LVEQA HLFEEML +GCEPNSQC NILL ACVEACQ+DRAFRLF+SW S +L D
Sbjct: 410 LVEQANHLFEEMLASGCEPNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADD 469
Query: 472 --YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529
G T + +++ S+ N + NS Y KRF FKPTT TYNIL+KAC TDY
Sbjct: 470 IVSKGRTSSPNILKNNGPGSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDY 526
Query: 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589
YR K LM+EM+++GLSPN I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTA
Sbjct: 527 YRGKELMDEMKSLGLSPNQITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTA 586
Query: 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPN 617
IK EM+ YQI+PN
Sbjct: 587 IK----------------EMRRYQIKPN 598
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 651 | ||||||
| TAIR|locus:2151236 | 852 | AT5G02830 [Arabidopsis thalian | 0.886 | 0.677 | 0.590 | 4.1e-184 | |
| TAIR|locus:2026207 | 548 | AT1G62680 [Arabidopsis thalian | 0.488 | 0.580 | 0.271 | 2.2e-25 | |
| TAIR|locus:2157607 | 709 | AT5G42310 [Arabidopsis thalian | 0.614 | 0.564 | 0.254 | 1.1e-23 | |
| TAIR|locus:2151281 | 819 | AT5G02860 [Arabidopsis thalian | 0.609 | 0.484 | 0.242 | 2.5e-23 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.465 | 0.506 | 0.245 | 1.5e-18 | |
| TAIR|locus:2015494 | 629 | RPF3 "RNA processing factor 3" | 0.549 | 0.569 | 0.244 | 4.8e-23 | |
| TAIR|locus:2163041 | 527 | AT5G41170 [Arabidopsis thalian | 0.559 | 0.690 | 0.239 | 7.5e-23 | |
| TAIR|locus:2175443 | 952 | AT5G04810 [Arabidopsis thalian | 0.594 | 0.406 | 0.236 | 9e-23 | |
| TAIR|locus:2031301 | 577 | AT1G63400 [Arabidopsis thalian | 0.549 | 0.620 | 0.241 | 6.2e-22 | |
| TAIR|locus:2015208 | 630 | AT1G63130 [Arabidopsis thalian | 0.542 | 0.560 | 0.246 | 7.7e-22 |
| TAIR|locus:2151236 AT5G02830 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1786 (633.8 bits), Expect = 4.1e-184, P = 4.1e-184
Identities = 345/584 (59%), Positives = 437/584 (74%)
Query: 72 DYYADMASKLAKDGRLEEFAMIXXXXXXXXG-NVSKFASMLSLEMVASGIVKSIREGRID 130
+YYAD ASKLA+DGR+E+ A+I G NV++FASM+ ++++ GI ++R+G+I+
Sbjct: 82 EYYADFASKLAEDGRIEDVALIAETLAAESGANVARFASMVDYDLLSKGISSNLRQGKIE 141
Query: 131 CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE 190
VV LK++ ++G+APL+L D S KL++ + + + +S +VE + LME+L +KE
Sbjct: 142 SVVYTLKRIEKVGIAPLDLVDDSSVKLMRKQFRAMANSVQVEKAIDLMEILAGLGFKIKE 201
Query: 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH 250
L + F +V+ CV + LAIRYAC++P ++L C + FGKK D+VS + AY+A K+
Sbjct: 202 LVDPFDVVKSCVEISNPQLAIRYACLLPHTELLLCRIIHGFGKKGDMVSVMTAYEACKQI 261
Query: 251 LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310
L +PNMYICRT+IDVCG+CGDY+KSR IYEDL +N+ NIYV NSLMNVN+HDL +TL+
Sbjct: 262 LDTPNMYICRTMIDVCGLCGDYVKSRYIYEDLLKENIKPNIYVINSLMNVNSHDLGYTLK 321
Query: 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370
VYKNMQ L V ADM SYNILLK CCLAG LAQ+IY E K +E+ G+LKLD FTY TI+
Sbjct: 322 VYKNMQILDVTADMTSYNILLKTCCLAGRVDLAQDIYKEAKRMESSGLLKLDAFTYCTII 381
Query: 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430
KVFADAK W+ ALKVK+DM S GVTPNT TWSSLI+ACANAGLVEQA HLFEEML +GCE
Sbjct: 382 KVFADAKMWKWALKVKDDMKSVGVTPNTHTWSSLISACANAGLVEQANHLFEEMLASGCE 441
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGED---YDGNTDRISNMEHKDK 487
PNSQC NILL ACVEACQ+DRAFRLF+SW S +L D G T + +++
Sbjct: 442 PNSQCFNILLHACVEACQYDRAFRLFQSWKGSSVNESLYADDIVSKGRTSSPNILKNNGP 501
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPN 547
S+ N + NS Y KRF FKPTT TYNIL+KAC TDYYR K LM+EM+++GLSPN
Sbjct: 502 GSLVNRNS---NSPYIQASKRFCFKPTTATYNILLKACGTDYYRGKELMDEMKSLGLSPN 558
Query: 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607
I+W+ LID CGGSG+VEGA++IL+ M G PDVVAYTTAIK+C +K LK AFSLFE
Sbjct: 559 QITWSTLIDMCGGSGDVEGAVRILRTMHSAGTRPDVVAYTTAIKICAENKCLKLAFSLFE 618
Query: 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
EM+ YQI+PN VTY TLL+ARS+YGSL EV+QCLA+YQDM AG
Sbjct: 619 EMRRYQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAG 662
|
|
| TAIR|locus:2026207 AT1G62680 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 315 (115.9 bits), Expect = 2.2e-25, P = 2.2e-25
Identities = 92/339 (27%), Positives = 167/339 (49%)
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
M ++G D+ +YN ++ + C T + + K +E KG+ + +V TY+ +V
Sbjct: 181 MVEIGYKPDIVAYNAIIDSLC---KTKRVNDAFDFFKEIERKGI-RPNVVTYTALVNGLC 236
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
++ W A ++ DM+ +TPN IT+S+L++A G V +A LFEEM++ +P+
Sbjct: 237 NSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMVRMSIDPDIV 296
Query: 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494
+ L+ C DR + + L ++ L + NT + N K K+
Sbjct: 297 TYSSLINGL---CLHDRIDEANQMFDLMVSKGCLADVVSYNT--LINGFCKAKRVEDGMK 351
Query: 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWT 552
F +R T TYN L++ D + + ++M G+SP+ ++
Sbjct: 352 LF------REMSQR-GLVSNTVTYNTLIQGFFQAGDVDKAQEFFSQMDFFGISPDIWTYN 404
Query: 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612
IL+ +G +E AL I + M++ M D+V YTT I+ ++ ++++A+SLF +
Sbjct: 405 ILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTGKVEEAWSLFCSLSLK 464
Query: 613 QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
++P++VTY T++ G LHEV+ A+Y M + G
Sbjct: 465 GLKPDIVTYTTMMSGLCTKGLLHEVE---ALYTKMKQEG 500
|
|
| TAIR|locus:2157607 AT5G42310 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 303 (111.7 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 114/448 (25%), Positives = 196/448 (43%)
Query: 221 DILFCN-FVREFGKKRDLVSALRAYD-ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D+ N + F K D AL+ A LS+ + +II G +++ A+
Sbjct: 268 DVQLVNDIIMGFAKSGDPSKALQLLGMAQATGLSAKTATLV-SIISALADSGRTLEAEAL 326
Query: 279 YEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336
+E+LR + +N+L+ V LK + M+K GV D +Y++L+ A
Sbjct: 327 FEELRQSGIKPRTRAYNALLKGYVKTGPLKDAESMVSEMEKRGVSPDEHTYSLLIDAYVN 386
Query: 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396
AG A+ + +K +EA G ++ + F +S ++ F D WQ +V ++M S GV P
Sbjct: 387 AGRWESARIV---LKEMEA-GDVQPNSFVFSRLLAGFRDRGEWQKTFQVLKEMKSIGVKP 442
Query: 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456
+ ++ +I+ ++ AM F+ ML G EP+ N L+ C C+ R
Sbjct: 443 DRQFYNVVIDTFGKFNCLDHAMTTFDRMLSEGIEPDRVTWNTLID-C--HCKHGR----- 494
Query: 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--YSSFD--KRF--S 510
+ E ++ ME + T N + NS+ +D KR
Sbjct: 495 --------HIVAEEMFEA-------MERRGCLPCATTYNIMINSYGDQERWDDMKRLLGK 539
Query: 511 FKPTTTTYNILMKACCTDYYRVKALMN-------EMRTVGLSPNHISWTILIDACGGSGN 563
K N++ D Y N EM++VGL P+ + LI+A G
Sbjct: 540 MKSQGILPNVVTHTTLVDVYGKSGRFNDAIECLEEMKSVGLKPSSTMYNALINAYAQRGL 599
Query: 564 VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E A+ ++M DG+ P ++A + I +R +AF++ + MK ++P++VTY T
Sbjct: 600 SEQAVNAFRVMTSDGLKPSLLALNSLINAFGEDRRDAEAFAVLQYMKENGVKPDVVTYTT 659
Query: 624 LLRARSRYGSLHEVQQCLAVYQDMWKAG 651
L++A R +V VY++M +G
Sbjct: 660 LMKALIRVDKFQKVP---VVYEEMIMSG 684
|
|
| TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 301 (111.0 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 103/425 (24%), Positives = 189/425 (44%)
Query: 231 FGKKRDLVSALRAYD---ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287
F KK DL ALRA+D K + S + + II + G G + ++ L+
Sbjct: 147 FHKKFDL--ALRAFDWFMKQKDYQSMLDNSVVAIIISMLGKEGRVSSAANMFNGLQEDGF 204
Query: 288 TLNIYVFNSLMNVNAHDLKF--TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQE 345
+L++Y + SL++ A+ ++ + V+K M++ G + +YN++L G +
Sbjct: 205 SLDVYSYTSLISAFANSGRYREAVNVFKKMEEDGCKPTLITYNVILNVFGKMGTPW--NK 262
Query: 346 IYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405
I V+ +++ G+ D +TY+T++ Q A +V E+M +AG + + +T+++L+
Sbjct: 263 ITSLVEKMKSDGIAP-DAYTYNTLITCCKRGSLHQEAAQVFEEMKAAGFSYDKVTYNALL 321
Query: 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465
+ + ++AM + EM+ G P+ N L+ A D A L T+
Sbjct: 322 DVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSLISAYARDGMLDEAMELKNQMAEKGTK 381
Query: 466 VALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD--KRFSFKPTTTTYNILMK 523
D T +S E K S S F+ + KP T+N +K
Sbjct: 382 ----PDVFTYTTLLSGFERAGKVE----------SAMSIFEEMRNAGCKPNICTFNAFIK 427
Query: 524 ACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP 581
+ + + +E+ GLSP+ ++W L+ G +G + K M+ G P
Sbjct: 428 MYGNRGKFTEMMKIFDEINVCGLSPDIVTWNTLLAVFGQNGMDSEVSGVFKEMKRAGFVP 487
Query: 582 DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641
+ + T I R +QA +++ M + P+L TY T+L A +R G + ++ L
Sbjct: 488 ERETFNTLISAYSRCGSFEQAMTVYRRMLDAGVTPDLSTYNTVLAALARGGMWEQSEKVL 547
Query: 642 AVYQD 646
A +D
Sbjct: 548 AEMED 552
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 255 (94.8 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 80/326 (24%), Positives = 149/326 (45%)
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ + ++ G + D+ +YN+++ C AG EI + L+ V DV TY+TI
Sbjct: 158 KILEILEGSGAVPDVITYNVMISGYCKAG------EINNALSVLDRMSVSP-DVVTYNTI 210
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQAG 428
++ D+ + A++V + ML P+ IT++ LI A C ++G V AM L +EM G
Sbjct: 211 LRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSG-VGHAMKLLDEMRDRG 269
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ N+L+ + + D A + S Q + T I +
Sbjct: 270 CTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNV------ITHNII------LR 317
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSP 546
S+ +T ++ + R F P+ T+NIL+ C +A+ + +M G P
Sbjct: 318 SMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQP 377
Query: 547 NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606
N +S+ L+ ++ A++ L+ M G PD+V Y T + + +++ A +
Sbjct: 378 NSLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEIL 437
Query: 607 EEMKHYQIQPNLVTYITLLRARSRYG 632
++ P L+TY T++ ++ G
Sbjct: 438 NQLSSKGCSPVLITYNTVIDGLAKAG 463
|
|
| TAIR|locus:2015494 RPF3 "RNA processing factor 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 296 (109.3 bits), Expect = 4.8e-23, P = 4.8e-23
Identities = 95/388 (24%), Positives = 183/388 (47%)
Query: 254 PNMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTL 309
P+++ T+++ G+C GD + ++ + + + ++ ++ ++++ N ++ L
Sbjct: 218 PDLFTYGTVVN--GLCKRGDIDLALSLLKKMEKGKIEADVVIYTTIIDALCNYKNVNDAL 275
Query: 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369
++ M G+ ++ +YN L++ C G A + ++ +E K + +V T+S +
Sbjct: 276 NLFTEMDNKGIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSAL 331
Query: 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+ F A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C
Sbjct: 332 IDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDC 391
Query: 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489
PN N L++ +A + + LFR +S+ + GNT + + Q
Sbjct: 392 FPNVVTYNTLIKGFCKAKRVEEGMELFRE--MSQRGLV------GNTVTYNTLI----QG 439
Query: 490 ITNTPNFVPNSHYSSFDKRFS--FKPTTTTYNILMKACCTDYYRV-KALM--NEMRTVGL 544
+ + + F K S P TY+IL+ C Y ++ KAL+ ++ +
Sbjct: 440 LFQAGDC--DMAQKIFKKMVSDGVPPDIITYSILLDGLCK-YGKLEKALVVFEYLQKSKM 496
Query: 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604
P+ ++ I+I+ +G VE + + G+ P+V+ YTT I R ++A +
Sbjct: 497 EPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKGVKPNVIIYTTMISGFCRKGLKEEADA 556
Query: 605 LFEEMKHYQIQPNLVTYITLLRARSRYG 632
LF EMK PN TY TL+RAR R G
Sbjct: 557 LFREMKEDGTLPNSGTYNTLIRARLRDG 584
|
|
| TAIR|locus:2163041 AT5G41170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 292 (107.8 bits), Expect = 7.5e-23, P = 7.5e-23
Identities = 94/393 (23%), Positives = 184/393 (46%)
Query: 254 PNMYICRTIIDVCGIC-GDYMK-SRAIYEDLRSQNVTLNIYVFNSLMNV---NAHDLKFT 308
P++ ++I+ G C G+ M+ + ++ + + ++ ++ ++++ N H + +
Sbjct: 140 PDIVTFTSLIN--GFCLGNRMEEAMSMVNQMVEMGIKPDVVMYTTIIDSLCKNGH-VNYA 196
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
L ++ M+ G+ D+ Y L+ C +G A + + K +K DV T++
Sbjct: 197 LSLFDQMENYGIRPDVVMYTSLVNGLCNSGRWRDADSLLRGM----TKRKIKPDVITFNA 252
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428
++ F + A ++ +M+ + PN T++SLIN G V++A +F M G
Sbjct: 253 LIDAFVKEGKFLDAEELYNEMIRMSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKG 312
Query: 429 CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488
C P+ L+ + + D A ++F + +S+ + GNT + + Q
Sbjct: 313 CFPDVVAYTSLINGFCKCKKVDDAMKIF--YEMSQKGLT------GNTITYTTLIQGFGQ 364
Query: 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEM--RTV-G 543
PN V +S R P TYN+L+ C + KALM +M R + G
Sbjct: 365 --VGKPN-VAQEVFSHMVSR-GVPPNIRTYNVLLHCLCYNGKVKKALMIFEDMQKREMDG 420
Query: 544 LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603
++PN ++ +L+ +G +E AL + + MR+ M ++ YT I+ ++ ++K A
Sbjct: 421 VAPNIWTYNVLLHGLCYNGKLEKALMVFEDMRKREMDIGIITYTIIIQGMCKAGKVKNAV 480
Query: 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636
+LF + ++PN+VTY T++ R G HE
Sbjct: 481 NLFCSLPSKGVKPNVVTYTTMISGLFREGLKHE 513
|
|
| TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 9.0e-23, P = 9.0e-23
Identities = 97/411 (23%), Positives = 189/411 (45%)
Query: 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHD 304
+ ++ + +P + I T++D + D K +++ L+ T + + L+N+
Sbjct: 439 EMEEEGIDAP-IAIYHTMMDGYTMVADEKKGLVVFKRLKECGFTPTVVTYGCLINLYTKV 497
Query: 305 LKFT--LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362
K + LEV + M++ GV ++ +Y++++ + A ++ ++ K +K D
Sbjct: 498 GKISKALEVSRVMKEEGVKHNLKTYSMMINGFVKLKDWANAFAVFEDM----VKEGMKPD 553
Query: 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422
V Y+ I+ F A++ ++M P T T+ +I+ A +G + +++ +F+
Sbjct: 554 VILYNNIISAFCGMGNMDRAIQTVKEMQKLRHRPTTRTFMPIIHGYAKSGDMRRSLEVFD 613
Query: 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482
M + GC P N L+ VE Q ++A + TL+ V+ E +I
Sbjct: 614 MMRRCGCVPTVHTFNGLINGLVEKRQMEKAVEILDEMTLAG--VSANEH---TYTKIM-- 666
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMR 540
+ S+ +T +++ TY L+KACC AL EM
Sbjct: 667 --QGYASVGDTGKAF--EYFTRLQNE-GLDVDIFTYEALLKACCKSGRMQSALAVTKEMS 721
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
+ N + ILID G+V A +++ M+++G+ PD+ YT+ I C ++ +
Sbjct: 722 ARNIPRNSFVYNILIDGWARRGDVWEAADLIQQMKKEGVKPDIHTYTSFISACSKAGDMN 781
Query: 601 QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
+A EEM+ ++PN+ TY TL++ +R SL E + L+ Y++M G
Sbjct: 782 RATQTIEEMEALGVKPNIKTYTTLIKGWAR-ASLPE--KALSCYEEMKAMG 829
|
|
| TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 6.2e-22, P = 6.2e-22
Identities = 95/393 (24%), Positives = 180/393 (45%)
Query: 264 DVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY--KNMQKLGVM 321
D G+ G +KSR + +I+ FN L++ A KF L + + MQ+LG+
Sbjct: 68 DAIGLFGGMVKSRPLP----------SIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGIS 117
Query: 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++ +YNIL+ C LA + G++ L G + + T S+++ + K
Sbjct: 118 HNLYTYNILINCFCRRSQISLALALLGKMMKL---GY-EPSIVTLSSLLNGYCHGKRISD 173
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
A+ + + M+ G P+TIT+++LI+ +A+ L + M+Q GC+PN +++
Sbjct: 174 AVALVDQMVEMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVN 233
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
+ D AF L +K + + Y D + H+D + N
Sbjct: 234 GLCKRGDIDLAFNLLNKMEAAKIEANV-VIYSTVIDSLCKYRHED-----DALNL----- 282
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCTDYYR---VKALMNEMRTVGLSPNHISWTILIDAC 558
++ + + +P TY+ L+ C +Y R L+++M ++PN +++ LIDA
Sbjct: 283 FTEMENK-GVRPNVITYSSLISCLC-NYERWSDASRLLSDMIERKINPNVVTFNALIDAF 340
Query: 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
G + A ++ M + + PD+ Y++ I RL +A +FE M PN+
Sbjct: 341 VKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNV 400
Query: 619 VTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
VTY TL+ + + + + ++++M + G
Sbjct: 401 VTYNTLING---FCKAKRIDEGVELFREMSQRG 430
|
|
| TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 285 (105.4 bits), Expect = 7.7e-22, Sum P(2) = 7.7e-22
Identities = 93/377 (24%), Positives = 172/377 (45%)
Query: 263 IDVCGIC--GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318
I V G+C GD + ++ + + + + ++N++++ N ++ L ++ M
Sbjct: 226 IVVNGLCKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNK 285
Query: 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378
G+ ++ +YN L++ C G A + ++ +E K + +V T+S ++ F
Sbjct: 286 GIRPNVVTYNSLIRCLCNYGRWSDASRLLSDM--IERK--INPNVVTFSALIDAFVKEGK 341
Query: 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438
A K+ ++M+ + P+ T+SSLIN +++A H+FE M+ C PN N
Sbjct: 342 LVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNT 401
Query: 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT-NTPNFV 497
L++ +A + D LFR +S+ + GNT + + H Q+ + V
Sbjct: 402 LIKGFCKAKRVDEGMELFRE--MSQRGLV------GNTVTYTTLIHGFFQARECDNAQIV 453
Query: 498 PNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALM--NEMRTVGLSPNHISWTILI 555
S P TY+IL+ C + AL+ ++ + P+ ++ I+I
Sbjct: 454 FKQMVSD-----GVLPDIMTYSILLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMI 508
Query: 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615
+ +G VE + + G+ P+VV YTT + R ++A +LF EMK
Sbjct: 509 EGMCKAGKVEDGWDLFCSLSLKGVKPNVVTYTTMMSGFCRKGLKEEADALFREMKEEGPL 568
Query: 616 PNLVTYITLLRARSRYG 632
P+ TY TL+RA R G
Sbjct: 569 PDSGTYNTLIRAHLRDG 585
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8GYL7 | PP361_ARATH | No assigned EC number | 0.5558 | 0.9892 | 0.7558 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 651 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 9e-28 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 8e-24 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-12 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 8e-09 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-08 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-07 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 7e-07 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 8e-07 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 7e-06 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 9e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 6e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.001 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 9e-28
Identities = 88/362 (24%), Positives = 156/362 (43%), Gaps = 63/362 (17%)
Query: 254 PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN----VNAHDLKFTL 309
N++ +ID C G K+ Y +RS+NV + VFN+L++ A D F
Sbjct: 505 ANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAF-- 562
Query: 310 EVYKNM--QKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367
+V M + + D + L+KAC AG A+E+Y + KG ++ Y+
Sbjct: 563 DVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEV----YT 618
Query: 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427
V + W AL + +DM GV P+ + +S+L++ +AG +++A + ++ +
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQ 678
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487
G + + + L+ AC A + +A L+ K
Sbjct: 679 GIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------ 714
Query: 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLS 545
+PT +T N L+ A C KAL ++EM+ +GL
Sbjct: 715 -----------------------LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLC 751
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605
PN I+++IL+ A + + L +L +EDG+ P++V +C+R R ++A +L
Sbjct: 752 PNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACAL 809
Query: 606 FE 607
E
Sbjct: 810 GE 811
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 8e-24
Identities = 76/328 (23%), Positives = 138/328 (42%), Gaps = 58/328 (17%)
Query: 324 MASYNILLKACCLAGNTVLAQEIYG--EVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381
++++N+L+ C + Q+I G V L + LK D Y+T++ A +
Sbjct: 437 LSTFNMLMSVCASS------QDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDA 490
Query: 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441
+V +M++AGV N T+ +LI+ CA AG V +A + M +P+ N L+
Sbjct: 491 MFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALIS 550
Query: 442 ACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH 501
AC ++ DRAF D ++ M+ + P
Sbjct: 551 ACGQSGAVDRAF-----------------------DVLAEMKAE------THP------- 574
Query: 502 YSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACG 559
P T LMKAC R K + + + +TI +++C
Sbjct: 575 ---------IDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCS 625
Query: 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV 619
G+ + AL I M++ G+ PD V ++ + V + L +AF + ++ + I+ V
Sbjct: 626 QKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTV 685
Query: 620 TYITLLRARSRYGSLHEVQQCLAVYQDM 647
+Y +L+ A S + ++ L +Y+D+
Sbjct: 686 SYSSLMGACS---NAKNWKKALELYEDI 710
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 2e-15
Identities = 103/430 (23%), Positives = 169/430 (39%), Gaps = 83/430 (19%)
Query: 269 CGDYMKSRAIYE-----DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD 323
CGD + +R +++ D S N ++ Y N LE++ M++L V D
Sbjct: 235 CGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEG-------LELFFTMRELSVDPD 287
Query: 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383
+ + ++ AC L G+ L +E++G V K +DV +++++++ W A
Sbjct: 288 LMTITSVISACELLGDERLGREMHGYV----VKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
KV M T + ++W+++I+ GL ++A+ + M Q P+ +L AC
Sbjct: 344 KVFSRM----ETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSAC 399
Query: 444 VEACQFDRAFRLF----RSWTLSKTQVA--LGEDY------DGNTDRISNMEHKDKQSIT 491
D +L R +S VA L E Y D + N+ KD S T
Sbjct: 400 ACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWT 459
Query: 492 NTPN-FVPNSHYSSFDKRFSF-------KPTTTTYNILMKACCTDYYRVKALM------- 536
+ N F+ F KP + T + AC R+ ALM
Sbjct: 460 SIIAGLRLN--NRCFEALIFFRQMLLTLKPNSVTLIAALSACA----RIGALMCGKEIHA 513
Query: 537 NEMRT-VGLS---PNHI-------------------------SWTILIDACGGSGNVEGA 567
+ +RT +G PN + SW IL+ G A
Sbjct: 514 HVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMA 573
Query: 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLR 626
+++ M E G++PD V + + + C RS + Q F M+ Y I PNL Y ++
Sbjct: 574 VELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 627 ARSRYGSLHE 636
R G L E
Sbjct: 634 LLGRAGKLTE 643
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443
P+ +T+++LI+ G VE+A+ LF EM + G +PN +IL+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.0 bits (152), Expect = 2e-12
Identities = 19/47 (40%), Positives = 27/47 (57%)
Query: 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627
PDVV Y T I + ++++A LF EMK I+PN+ TY L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDG 47
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 65.7 bits (160), Expect = 5e-11
Identities = 45/178 (25%), Positives = 71/178 (39%), Gaps = 42/178 (23%)
Query: 513 PTTTTYNILMKACCTDY-----YRVKALM------------------------------- 536
PT +T+N+LM C + RV L+
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 537 -NEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
+EM G+ N ++ LID C +G V A IMR + PD V + I C +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 596 SKRLKQAFSLFEEMKH--YQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651
S + +AF + EMK + I P+ +T L++A + G +V + VYQ + +
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG---QVDRAKEVYQMIHEYN 609
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 2e-10
Identities = 31/117 (26%), Positives = 60/117 (51%), Gaps = 12/117 (10%)
Query: 523 KAC-----CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577
KAC + +R L+ P ++ +L+ C S +++GAL++L++++E
Sbjct: 414 KACKKQRAVKEAFRFAKLIRN-------PTLSTFNMLMSVCASSQDIDGALRVLRLVQEA 466
Query: 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSL 634
G+ D YTT I C +S ++ F +F EM + ++ N+ T+ L+ +R G +
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 53.9 bits (131), Expect = 1e-09
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410
DV TY+T++ + + ALK+ +M G+ PN T+S LI+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 8e-09
Identities = 15/50 (30%), Positives = 27/50 (54%)
Query: 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595
P+ +++ LID G VE AL++ M++ G+ P+V Y+ I +
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 4e-08
Identities = 48/213 (22%), Positives = 99/213 (46%), Gaps = 24/213 (11%)
Query: 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDL-KFTLEVY 312
+ ++ +ID+ CGD +R +++ + + +NS++ A H + L +Y
Sbjct: 258 DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLY 313
Query: 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVK 371
M+ GV D +++I+++ A++ + G ++ LD+ + +V
Sbjct: 314 YEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GFPLDIVANTALVD 368
Query: 372 VFADAKWWQM--ALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427
+++ KW +M A V + M P N I+W++LI N G +A+ +FE M+
Sbjct: 369 LYS--KWGRMEDARNVFDRM------PRKNLISWNALIAGYGNHGRGTKAVEMFERMIAE 420
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460
G PN +L AC + ++ + +F+S +
Sbjct: 421 GVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 2e-07
Identities = 73/328 (22%), Positives = 138/328 (42%), Gaps = 44/328 (13%)
Query: 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST 368
LE Y M++ V D + +L AC G+ + +++ + E KG++ V +
Sbjct: 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLH---ELAERKGLISYVVVANAL 430
Query: 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGLVEQAMHLFEEMLQA 427
I ++++ K AL+V ++ + I+W+S+I N E A+ F +ML
Sbjct: 431 I-EMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFE-ALIFFRQML-L 483
Query: 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALG-EDYDGNTDRISNMEHKD 486
+PNS + L A + AC A + + +G + + N + ++ +
Sbjct: 484 TLKPNS----VTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNA--LLDLYVRC 537
Query: 487 KQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR------VKALMNEMR 540
+ F NSH + ++NIL+ T Y L N M
Sbjct: 538 GRMNYAWNQF--NSH----------EKDVVSWNILL----TGYVAHGKGSMAVELFNRMV 581
Query: 541 TVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRL 599
G++P+ +++ L+ AC SG V L+ M E ++P++ Y + + R+ +L
Sbjct: 582 ESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641
Query: 600 KQAFSLFEEMKHYQIQPNLVTYITLLRA 627
+A++ +M I P+ + LL A
Sbjct: 642 TEAYNFINKMP---ITPDPAVWGALLNA 666
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 68/372 (18%), Positives = 154/372 (41%), Gaps = 36/372 (9%)
Query: 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMAS 326
CG + +R +++++ +N + + +++ V+A + + +++ M + G A+ +
Sbjct: 171 CGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRT 226
Query: 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386
+ ++L+A G+ Q+++ V G D F ++ +++ + A V
Sbjct: 227 FVVMLRASAGLGSARAGQQLHCCVLKTGVVG----DTFVSCALIDMYSKCGDIEDARCVF 282
Query: 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446
+ M T+ W+S++ A G E+A+ L+ EM +G + +I+++
Sbjct: 283 DGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506
+ A + + D NT + + K V FD
Sbjct: 339 ALLEHA----KQAHAGLIRTGFPLDIVANTALV---DLYSKWGRMEDARNV-------FD 384
Query: 507 KRFSFKPTTTTYNILMKACCTDYYRVKA--LMNEMRTVGLSPNHISWTILIDACGGSGNV 564
+ + ++N L+ KA + M G++PNH+++ ++ AC SG
Sbjct: 385 RMP--RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLS 442
Query: 565 EGALQILKIMRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623
E +I + M E+ + P + Y I++ R L +A+++ ++ +P + +
Sbjct: 443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAA 499
Query: 624 LLRARSRYGSLH 635
LL A + +L
Sbjct: 500 LLTACRIHKNLE 511
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.6 bits (112), Expect = 4e-07
Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDAC 558
P TYN L+ C L NEM+ G+ PN +++ILID
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 6e-07
Identities = 10/48 (20%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 290 NIYVFNSLMN--VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335
++ +N+L++ ++ L+++ M+K G+ ++ +Y+IL+ C
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 7e-07
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEM 424
G+ P+ +T+++LI+ AG V++A+ L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 45.5 bits (109), Expect = 7e-07
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433
+T+++LI+ AG VE+A+ LF+EM + G EP+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (125), Expect = 8e-07
Identities = 100/494 (20%), Positives = 195/494 (39%), Gaps = 73/494 (14%)
Query: 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA---- 220
L G++E + L+E ++E R+PV E D + +LC K V R +
Sbjct: 61 LCSHGQLEQALKLLESMQELRVPVDE-DAYVALFRLCEWKRAVEEGSRVCSRALSSHPSL 119
Query: 221 -----DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275
+ + FVR FG +LV A + + +++ ++ G + ++
Sbjct: 120 GVRLGNAMLSMFVR-FG---ELVHAWYVF----GKMPERDLFSWNVLVGGYAKAGYFDEA 171
Query: 276 RAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333
+Y + V ++Y F ++ DL EV+ ++ + G D+ N L+
Sbjct: 172 LCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITM 231
Query: 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393
G+ V A+ ++ + + D +++ ++ + + L++ M
Sbjct: 232 YVKCGDVVSARLVF--------DRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283
Query: 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453
V P+ +T +S+I+AC G + +++ G + CN L+Q + + A
Sbjct: 284 VDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAE 343
Query: 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT-----PNFVPNSH---YSSF 505
++F S ME KD S T N +P+ Y+
Sbjct: 344 KVF-----------------------SRMETKDAVSWTAMISGYEKNGLPDKALETYALM 380
Query: 506 DKRFSFKPTTTTYNILMKAC-CTDYYRVKALMNEMRTVGLSPNHISWTI----LIDACGG 560
++ + P T ++ AC C V ++E+ IS+ + LI+
Sbjct: 381 EQD-NVSPDEITIASVLSACACLGDLDVGVKLHEL---AERKGLISYVVVANALIEMYSK 436
Query: 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620
++ AL++ + E DV+++T+ I + R +A F +M ++PN VT
Sbjct: 437 CKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML-LTLKPNSVT 491
Query: 621 YITLLRARSRYGSL 634
I L A +R G+L
Sbjct: 492 LIAALSACARIGAL 505
|
Length = 857 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 7e-06
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGC 429
+T++SLI+ AG +E+A+ LF+EM + G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 9e-06
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEP 431
T+++L+ A A AG + A+ + EEM +G +P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583
+++ LID +G VE AL++ K M+E G+ PDV
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 1e-04
Identities = 75/357 (21%), Positives = 124/357 (34%), Gaps = 79/357 (22%)
Query: 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412
LEA L TY +V+ K + V + S+G P+ + ++ G
Sbjct: 113 LEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCG 172
Query: 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS-W------------ 459
++ A LF+EM E N ++ V+A + AF LFR W
Sbjct: 173 MLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFV 228
Query: 460 TLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSH--------YSSF----DK 507
+ + LG G + V ++ YS D
Sbjct: 229 VMLRASAGLGSARAG----------QQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDA 278
Query: 508 RFSF----KPTTTTYNILMKACCTDYYRVKAL--MNEMRTVGLSPNHISWTILIDACGGS 561
R F + TT +N ++ Y +AL EMR G+S + +++I+I
Sbjct: 279 RCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRL 338
Query: 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK--------------------- 600
+E A Q + G D+VA T + + + R++
Sbjct: 339 ALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALI 398
Query: 601 ----------QAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647
+A +FE M + PN VT++ +L A RY L +Q ++Q M
Sbjct: 399 AGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA-CRYSGL--SEQGWEIFQSM 452
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 20/34 (58%)
Query: 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610
G+ PDVV Y T I R+ R+ +A L +EM+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 3e-04
Identities = 7/34 (20%), Positives = 15/34 (44%)
Query: 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
+ Y + ++ A ++ EEMK ++P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 6e-04
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617
V Y T I ++ R+++A LF+EMK I+P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 6e-04
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579
+++ LI +G +E AL++ K M+E G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.8 bits (86), Expect = 0.001
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 550 SWTILIDACGGSGNVEGALQILKIMREDGMSP 581
++ L+ A +G+ + AL +L+ M+ G+ P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 36.6 bits (86), Expect = 0.002
Identities = 15/96 (15%), Positives = 25/96 (26%), Gaps = 47/96 (48%)
Query: 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490
P+ N L+ + + + A +LF + M
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLF-----------------------NEM-------- 29
Query: 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
K+ KP TY+IL+ C
Sbjct: 30 ----------------KKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398
TY+T++ A + AL++ ++M G+ P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.94 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.93 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.9 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.87 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.86 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.85 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.85 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.83 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.81 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.8 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.79 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.78 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.77 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.72 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.66 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.65 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.64 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.62 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.6 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.55 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.54 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.54 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.53 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.53 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.52 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.52 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.51 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.5 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.5 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.48 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.48 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.42 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.41 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.4 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.37 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.37 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.36 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.32 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.29 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.28 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.28 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.27 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.26 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.25 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.23 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.22 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.22 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.21 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.18 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.16 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.16 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.14 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.14 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.03 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.02 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.98 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.97 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.97 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.97 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.95 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.94 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.94 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.89 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.87 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.85 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.83 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.8 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.79 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.78 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.77 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.75 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.75 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.74 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.73 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.73 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.7 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.66 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.65 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.64 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.63 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.59 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.58 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.57 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.56 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.54 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.53 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.52 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.48 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.42 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.4 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.38 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.37 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.35 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.35 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.35 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.32 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.28 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.21 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.2 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.16 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.15 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.15 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.14 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.13 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.12 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.11 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.03 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 98.01 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.0 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.98 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.95 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.93 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.87 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.84 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.82 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.82 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.8 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.78 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.78 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.74 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.69 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.69 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.65 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.63 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.63 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.58 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.55 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.53 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.42 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.41 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.41 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.4 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.39 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.39 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.35 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.33 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.31 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.26 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.25 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.23 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.23 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.22 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.17 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.14 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.12 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.1 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.09 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.01 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.99 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 96.98 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.98 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.98 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.93 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.91 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.88 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.86 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.82 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.75 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.74 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.71 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.69 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.68 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.65 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.63 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 96.62 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.6 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.59 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 96.59 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.58 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.52 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.46 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.39 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.35 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.3 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.27 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.24 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.12 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.12 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.11 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.98 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 95.91 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.85 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.8 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 95.72 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.71 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.66 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 95.51 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 95.39 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 95.29 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.28 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 95.15 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.14 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.13 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.12 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.11 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.1 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 95.07 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 94.94 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.93 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.82 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.76 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.73 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 94.7 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 94.65 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.51 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.45 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.33 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.24 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 94.14 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 93.99 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 93.81 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 93.76 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.73 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.52 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.51 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.5 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.49 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 93.35 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.29 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 93.25 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.24 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.15 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 93.04 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.89 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 92.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.64 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 92.62 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 92.47 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 92.28 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.23 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 91.94 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 91.93 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.58 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 91.55 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 91.21 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 91.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.04 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.03 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 90.94 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 90.94 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.77 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 90.58 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 90.53 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 90.31 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 90.25 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 90.17 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 90.15 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 89.84 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 89.59 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 89.48 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.27 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 88.81 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 88.51 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 88.38 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 87.8 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.76 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.16 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.06 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 86.83 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 86.69 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.61 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.75 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 85.32 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 85.27 | |
| KOG0687 | 393 | consensus 26S proteasome regulatory complex, subun | 85.24 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 85.15 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 84.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.87 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.76 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 84.45 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 84.38 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 84.04 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 83.86 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 83.76 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 83.0 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 82.62 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 82.36 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 82.19 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 82.05 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.72 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 81.67 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 81.48 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 80.85 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.8 | |
| PF07163 | 309 | Pex26: Pex26 protein; InterPro: IPR010797 This fam | 80.29 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 80.11 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-63 Score=527.81 Aligned_cols=508 Identities=18% Similarity=0.280 Sum_probs=462.1
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
+...|..++..|++.|++++|+++|+.|.+.|..+.. .-.+..++..+.+.|..++|..+++.|.+ |+..
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~------~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~ 438 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMD------KIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLS 438 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCch------HHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHH
Confidence 4778899999999999999999999999998754321 22335567778899999999999998874 6554
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC-----CCCccH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP-----RADILF 224 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-----~~~~~~ 224 (651)
+++.++.+|+. .|++++|..++++|...|..| +...++.++.+|++.|++++|.++|+.+. ++..+|
T Consensus 439 ----Tyn~LL~a~~k---~g~~e~A~~lf~~M~~~Gl~p-D~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTy 510 (1060)
T PLN03218 439 ----TFNMLMSVCAS---SQDIDGALRVLRLVQEAGLKA-DCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTF 510 (1060)
T ss_pred ----HHHHHHHHHHh---CcCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 66777775544 899999999999999998765 56779999999999999999999999874 567999
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh--CCCcccHHHHHHHHHhhc
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS--QNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~~ 302 (651)
+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.. .|+.||..+|++++.+++
T Consensus 511 naLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~ 590 (1060)
T PLN03218 511 GALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACA 590 (1060)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999986 688999999999999876
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
|++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|+++
T Consensus 591 k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~---~G-v~PD~~TynsLI~a~~k~G~~e 666 (1060)
T PLN03218 591 NAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK---KG-VKPDEVFFSALVDVAGHAGDLD 666 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhCCCHH
Confidence 79999999999999999999999999999999999999999999999987 45 7999999999999999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.|+..+|+.||.+|++.|++++|.++|++|.
T Consensus 667 eA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~ 746 (1060)
T PLN03218 667 KAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMK 746 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHH
Q 006303 461 LSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNE 538 (651)
Q Consensus 461 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~ 538 (651)
..+ +.||..||+.+|.+|++ +.+.|.++|++
T Consensus 747 ~~G-----------------------------------------------i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~ 779 (1060)
T PLN03218 747 RLG-----------------------------------------------LCPNTITYSILLVASERKDDADVGLDLLSQ 779 (1060)
T ss_pred HcC-----------------------------------------------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 665 59999999999999985 79999999999
Q ss_pred HHHcCCCCcHHHHHHHHHHHhc----C-------------------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 539 MRTVGLSPNHISWTILIDACGG----S-------------------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 539 ~~~~~~~p~~~~~~~li~~~~~----~-------------------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
|.+.|+.||..+|+.++..|.+ + +..+.|..+|++|++.|+.||..||+.++.++++
T Consensus 780 M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~ 859 (1060)
T PLN03218 780 AKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQL 859 (1060)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcc
Confidence 9999999999999999976432 1 2346799999999999999999999999988889
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
.+..+.+.++++.|...+..|+..+|+++|.++.+. ..+++.+|++|.+.|
T Consensus 860 ~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~-----~~~A~~l~~em~~~G 910 (1060)
T PLN03218 860 PHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY-----DPRAFSLLEEAASLG 910 (1060)
T ss_pred cccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC-----hHHHHHHHHHHHHcC
Confidence 999999999999999889999999999999998433 245777999999887
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-63 Score=539.43 Aligned_cols=526 Identities=19% Similarity=0.246 Sum_probs=419.6
Q ss_pred ccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHh--hhh--------------------------HHHHHhH
Q 006303 68 SSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFAS--MLS--------------------------LEMVASG 119 (651)
Q Consensus 68 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~--~~~--------------------------~~~~~~~ 119 (651)
.++...++.++..+++.|++++|..+|+.|.+.|..|+..+. ++. ....+.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 335677889999999999999999999999888766654332 111 1233667
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
+..|.+.|+++.|..+|++|.+ |+.. .++.++. .+.+.|++++|+.+|++|...|..|+ ...+..+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~----~d~~----~~n~li~---~~~~~g~~~~A~~~f~~M~~~g~~Pd-~~t~~~ll~ 195 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPE----RDLF----SWNVLVG---GYAKAGYFDEALCLYHRMLWAGVRPD-VYTFPCVLR 195 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCC----CCee----EHHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHH
Confidence 7888899999999999998874 4443 5566666 44458999999999999998887664 455788899
Q ss_pred HHhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 200 LCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
+|...++...+.+++..+ .++..++++|+.+|++.|++++|.++|++|.+ ||..+||.++.+|.+.|++++
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~e 271 (857)
T PLN03077 196 TCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLE 271 (857)
T ss_pred HhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHH
Confidence 999999999888887764 45678999999999999999999999999975 889999999999999999999
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 275 a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
|+++|++|.+.|+.||..+|+.++.+++ ++.+.+.+++..|.+.|+.||..+|+.|+.+|++.|++++|.++|+.|.
T Consensus 272 Al~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 350 (857)
T PLN03077 272 GLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME- 350 (857)
T ss_pred HHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-
Confidence 9999999999999999999999999876 7999999999999999999999999999999999999999999999985
Q ss_pred hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.||..+|+.++.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+
T Consensus 351 -------~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~ 423 (857)
T PLN03077 351 -------TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISY 423 (857)
T ss_pred -------CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccccccc-----CCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY-----DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
..+|+.|+++|++.|++++|.++|++|.+.+.. .+.... .+..... ..++..|.
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v-s~~~mi~~~~~~g~~~eA--------------------~~lf~~m~ 482 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVI-SWTSIIAGLRLNNRCFEA--------------------LIFFRQML 482 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee-eHHHHHHHHHHCCCHHHH--------------------HHHHHHHH
Confidence 999999999999999999999999999865432 111100 0000000 01112222
Q ss_pred ccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHH------------------------------HHHHHH
Q 006303 508 RFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHI------------------------------SWTILI 555 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~------------------------------~~~~li 555 (651)
.++.||..||+.+|.+|++ +.+.+.+++..+.+.|+.+|.. +||++|
T Consensus 483 -~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI 561 (857)
T PLN03077 483 -LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILL 561 (857)
T ss_pred -hCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHH
Confidence 1469999999999999985 7899999999999998865554 455555
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSL 634 (651)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~ 634 (651)
.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|++++|.++|++|. +.|+.|+..+|++++.+|++.|++
T Consensus 562 ~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~ 641 (857)
T PLN03077 562 TGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKL 641 (857)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCH
Confidence 5555555555555556666555556666666666666666666666666666665 455566666666666666666665
Q ss_pred HHHHH
Q 006303 635 HEVQQ 639 (651)
Q Consensus 635 ~~a~~ 639 (651)
++|.+
T Consensus 642 ~eA~~ 646 (857)
T PLN03077 642 TEAYN 646 (857)
T ss_pred HHHHH
Confidence 55444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-61 Score=516.50 Aligned_cols=469 Identities=21% Similarity=0.372 Sum_probs=425.6
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (651)
+..++..+++.|++++|+++|++|.+.|+.+... .....++..|. +.|..++|+.+++.|.. ++...+.
T Consensus 373 ~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~---v~~~~li~~~~---~~g~~~eAl~lf~~M~~-----pd~~Tyn 441 (1060)
T PLN03218 373 YIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDK---IYHAKFFKACK---KQRAVKEAFRFAKLIRN-----PTLSTFN 441 (1060)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchH---HHHHHHHHHHH---HCCCHHHHHHHHHHcCC-----CCHHHHH
Confidence 3455667789999999999999999988654221 23344555443 47999999999998864 4567899
Q ss_pred HHHHHHhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICG 270 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 270 (651)
.++.+|++.|++++|.++|+.+ .++..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|
T Consensus 442 ~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G 521 (1060)
T PLN03218 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG 521 (1060)
T ss_pred HHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence 9999999999999999999886 35668999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHH--CCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 271 DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQK--LGVMADMASYNILLKACCLAGNTVLAQEI 346 (651)
Q Consensus 271 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~--~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (651)
++++|.++|++|.+.|+.||..+|+.+|.+++ |++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++
T Consensus 522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el 601 (1060)
T PLN03218 522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV 601 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999999999999999877 799999999999976 67899999999999999999999999999
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
|+.|.+ .| ++|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+
T Consensus 602 f~~M~e---~g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 602 YQMIHE---YN-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHHHH---cC-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 999987 44 78999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
.|+.|+..+|+.+|.+|++.|++++|.++|++|...+
T Consensus 678 ~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g------------------------------------------- 714 (1060)
T PLN03218 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK------------------------------------------- 714 (1060)
T ss_pred cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC-------------------------------------------
Confidence 9999999999999999999999999999999997654
Q ss_pred cccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 006303 507 KRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (651)
Q Consensus 507 ~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 584 (651)
+.||..+||.+|.+|++ +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++++|.+.|+.||..
T Consensus 715 ----~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~ 790 (1060)
T PLN03218 715 ----LRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLV 790 (1060)
T ss_pred ----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHH
Confidence 48999999999999985 799999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 585 AYTTAIKVCVR----S-------------------KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 585 ~~~~li~~~~~----~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
+|+.++..|.+ + +..++|..+|++|++.|+.||..||+.++.++++.+..+.+..
T Consensus 791 tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~-- 868 (1060)
T PLN03218 791 MCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNR-- 868 (1060)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHH--
Confidence 99999876542 1 2246899999999999999999999999988888888777555
Q ss_pred HHHHHHHh
Q 006303 642 AVYQDMWK 649 (651)
Q Consensus 642 ~~~~~m~~ 649 (651)
+++.|..
T Consensus 869 -m~~~m~~ 875 (1060)
T PLN03218 869 -LIENLGI 875 (1060)
T ss_pred -HHHHhcc
Confidence 5555543
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-61 Score=526.80 Aligned_cols=499 Identities=17% Similarity=0.228 Sum_probs=360.5
Q ss_pred cchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhH----------------------------HHHHhHH
Q 006303 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL----------------------------EMVASGI 120 (651)
Q Consensus 69 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~----------------------------~~~~~~~ 120 (651)
++..+|+.++.+|++.|++++|+++|++|...|+.|+.++..... .+++.++
T Consensus 150 ~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li 229 (857)
T PLN03077 150 RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229 (857)
T ss_pred CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHH
Confidence 457799999999999999999999999999999999865442221 1234455
Q ss_pred HHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH
Q 006303 121 VKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (651)
Q Consensus 121 ~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (651)
..|++.|++++|..+|++|.+ |+.. .++.++. .|.+.|++++|+++|++|...++.|+ ...+..++.+
T Consensus 230 ~~y~k~g~~~~A~~lf~~m~~----~d~~----s~n~li~---~~~~~g~~~eAl~lf~~M~~~g~~Pd-~~ty~~ll~a 297 (857)
T PLN03077 230 TMYVKCGDVVSARLVFDRMPR----RDCI----SWNAMIS---GYFENGECLEGLELFFTMRELSVDPD-LMTITSVISA 297 (857)
T ss_pred HHHhcCCCHHHHHHHHhcCCC----CCcc----hhHHHHH---HHHhCCCHHHHHHHHHHHHHcCCCCC-hhHHHHHHHH
Confidence 556666666666666666543 2222 3344444 33335666666666666666665443 3445566666
Q ss_pred HhcCCChHHHHHHhhhC-----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHH
Q 006303 201 CVNKPDVNLAIRYACIV-----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKS 275 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 275 (651)
|.+.|+.+.|.+++..+ .++..+|++|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|.+.|++++|
T Consensus 298 ~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A 373 (857)
T PLN03077 298 CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKA 373 (857)
T ss_pred HHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHH
Confidence 66666666666665543 34456666666666666666666666666643 5666666666666666666666
Q ss_pred HHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHh
Q 006303 276 RAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHL 353 (651)
Q Consensus 276 ~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 353 (651)
+++|++|.+.|+.||..+|+.++.+++ |+++.+.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|+.|.
T Consensus 374 ~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~-- 451 (857)
T PLN03077 374 LETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP-- 451 (857)
T ss_pred HHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCC--
Confidence 666666666666666666666666554 4666666666666666666666666666666666666666666666654
Q ss_pred hhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 006303 354 EAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS 433 (651)
Q Consensus 354 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 433 (651)
.+|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+.++.
T Consensus 452 ------~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~ 524 (857)
T PLN03077 452 ------EKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDG 524 (857)
T ss_pred ------CCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccc
Confidence 24666666666666666666666666666654 36666666666666666666666666666666666666666
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.+++.|+++|+++|++++|.++|+.+ .|
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~----------------------------------------------------~~ 552 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH----------------------------------------------------EK 552 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc----------------------------------------------------CC
Confidence 66666666666666666666666543 68
Q ss_pred CHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH-HCCCCCCHHHHHHHH
Q 006303 514 TTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR-EDGMSPDVVAYTTAI 590 (651)
Q Consensus 514 ~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~~~p~~~~~~~li 590 (651)
|..+||++|.+|++ +.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. +.|+.|+..+|+.++
T Consensus 553 d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv 632 (857)
T PLN03077 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVV 632 (857)
T ss_pred ChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 99999999999985 789999999999999999999999999999999999999999999999 689999999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 591 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
.+|++.|++++|.+++++| .++||..+|++|+.+|..+|+.+.++.+.+.+-+|
T Consensus 633 ~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l 686 (857)
T PLN03077 633 DLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHRHVELGELAAQHIFEL 686 (857)
T ss_pred HHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhh
Confidence 9999999999999999999 58999999999999999999998887766555444
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-58 Score=494.02 Aligned_cols=465 Identities=17% Similarity=0.237 Sum_probs=404.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...++.++..+.+.|++++|+++|+.|...+ ..|+ ..+++.++..+.+.++++.+..++..|.+.|+.|+..
T Consensus 87 ~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~-------~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~ 159 (697)
T PLN03081 87 GVSLCSQIEKLVACGRHREALELFEILEAGCPFTLP-------ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159 (697)
T ss_pred ceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCC-------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchH
Confidence 4477888888888888888888888887654 4455 4455667777778888888888888888777777655
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
+++.++. .|.+.|++++|.++|++|.. ++..+|++++.
T Consensus 160 ----~~n~Li~---~y~k~g~~~~A~~lf~~m~~-----------------------------------~~~~t~n~li~ 197 (697)
T PLN03081 160 ----MMNRVLL---MHVKCGMLIDARRLFDEMPE-----------------------------------RNLASWGTIIG 197 (697)
T ss_pred ----HHHHHHH---HHhcCCCHHHHHHHHhcCCC-----------------------------------CCeeeHHHHHH
Confidence 3344444 33346777777777776632 23478999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (651)
+|++.|++++|+++|++|.+.|..|+..+|+.++.+|.+.|+.+.+.+++..+.+.|+.||..+|++++..|+ |++++
T Consensus 198 ~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~ 277 (697)
T PLN03081 198 GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIED 277 (697)
T ss_pred HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999876 79999
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|.++|++|.. +|..+||.++.+|++.|++++|.++|++|.+ .| +.||..+|+.++.+|++.|++++|.+++.
T Consensus 278 A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~---~g-~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 278 ARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRD---SG-VSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred HHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHH---cC-CCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 9999999964 6899999999999999999999999999986 44 78999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
.|.+.|+.||..+|+.|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|+.++|.++|++|...+
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g---- 421 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEG---- 421 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhC----
Confidence 99999999999999999999999999999999999996 5788999999999999999999999999998765
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHH-cCC
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRT-VGL 544 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~-~~~ 544 (651)
+.||..||+++|.+|++ ..++|.++|+.|.+ .|+
T Consensus 422 -------------------------------------------~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 422 -------------------------------------------VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred -------------------------------------------CCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 49999999999999984 78999999999976 699
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYIT 623 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 623 (651)
.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++. ++.|+ ..+|..
T Consensus 459 ~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~--~~~p~~~~~y~~ 533 (697)
T PLN03081 459 KPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY--GMGPEKLNNYVV 533 (697)
T ss_pred CCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh--CCCCCCCcchHH
Confidence 999999999999999999999999998776 478999999999999999999999999999997 45564 679999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhcC
Q 006303 624 LLRARSRYGSLHEVQQCLAVYQDMWKAG 651 (651)
Q Consensus 624 l~~~~~~~g~~~~a~~~~~~~~~m~~~g 651 (651)
+++.|++.|++++|.+ +++.|.++|
T Consensus 534 L~~~y~~~G~~~~A~~---v~~~m~~~g 558 (697)
T PLN03081 534 LLNLYNSSGRQAEAAK---VVETLKRKG 558 (697)
T ss_pred HHHHHHhCCCHHHHHH---HHHHHHHcC
Confidence 9999999999999777 777888766
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-57 Score=481.55 Aligned_cols=426 Identities=17% Similarity=0.232 Sum_probs=395.8
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcC-CCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELG-VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
++.++..+.+.|++++|+++|+.|...+ ..|+.. +++.++.+|.. .++.+.+.+++..+...|..|
T Consensus 90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~----t~~~ll~a~~~---~~~~~~a~~l~~~m~~~g~~~------ 156 (697)
T PLN03081 90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPAS----TYDALVEACIA---LKSIRCVKAVYWHVESSGFEP------ 156 (697)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHh---CCCHHHHHHHHHHHHHhCCCc------
Confidence 3556788899999999999999998764 566554 56667775554 788999999999998887654
Q ss_pred HHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 195 FRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 195 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
+..+|+.|+.+|++.|++++|.++|++|.+ ||..+|+.++.+|++.|++++
T Consensus 157 -------------------------~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~~~~t~n~li~~~~~~g~~~~ 207 (697)
T PLN03081 157 -------------------------DQYMMNRVLLMHVKCGMLIDARRLFDEMPE----RNLASWGTIIGGLVDAGNYRE 207 (697)
T ss_pred -------------------------chHHHHHHHHHHhcCCCHHHHHHHHhcCCC----CCeeeHHHHHHHHHHCcCHHH
Confidence 347899999999999999999999999975 899999999999999999999
Q ss_pred HHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 275 a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
|.++|++|.+.|+.|+..+|+.++.+++ +..+.+.+++..+.+.|+.||..+|+.|+++|++.|++++|.++|+.|.
T Consensus 208 A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~- 286 (697)
T PLN03081 208 AFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP- 286 (697)
T ss_pred HHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-
Confidence 9999999999999999999999999877 6889999999999999999999999999999999999999999999985
Q ss_pred hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
++|..+||.|+.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.|+
T Consensus 287 -------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d 359 (697)
T PLN03081 287 -------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359 (697)
T ss_pred -------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCC
Confidence 4799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccC
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (651)
..+|+.|+++|+++|++++|.++|++|. .
T Consensus 360 ~~~~~~Li~~y~k~G~~~~A~~vf~~m~---------------------------------------------------~ 388 (697)
T PLN03081 360 IVANTALVDLYSKWGRMEDARNVFDRMP---------------------------------------------------R 388 (697)
T ss_pred eeehHHHHHHHHHCCCHHHHHHHHHhCC---------------------------------------------------C
Confidence 9999999999999999999999999885 6
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH-CCCCCCHHHHHHH
Q 006303 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE-DGMSPDVVAYTTA 589 (651)
Q Consensus 513 ~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~p~~~~~~~l 589 (651)
||..+||++|.+|++ +.++|.++|++|.+.|+.||..||++++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+
T Consensus 389 ~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~l 468 (697)
T PLN03081 389 KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACM 468 (697)
T ss_pred CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhH
Confidence 889999999999985 7999999999999999999999999999999999999999999999986 6999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
+.+|++.|++++|.+++++| ++.||..+|++++.+|...|+++.|+++.+.+.
T Consensus 469 i~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~ 521 (697)
T PLN03081 469 IELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521 (697)
T ss_pred HHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 99999999999999999887 689999999999999999999999988665543
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-28 Score=270.66 Aligned_cols=533 Identities=13% Similarity=0.032 Sum_probs=401.7
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+...|.. ...+..++..+...|++++|+..|+++.+. .|.. ...+..++..+...|++++|+..+++
T Consensus 352 ~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~ 422 (899)
T TIGR02917 352 LSPALGLDPDD-PAALSLLGEAYLALGDFEKAAEYLAKATEL--DPEN------AAARTQLGISKLSQGDPSEAIADLET 422 (899)
T ss_pred HHHHHhcCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCC------HHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 33444445555 778889999999999999999999999887 5542 33445567778899999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
+.+.. |+.. .. .......+.+.|++++|+.+++++.... |++...+..++..+...|++++|.+.|..+
T Consensus 423 a~~~~--~~~~---~~---~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 492 (899)
T TIGR02917 423 AAQLD--PELG---RA---DLLLILSYLRSGQFDKALAAAKKLEKKQ--PDNASLHNLLGAIYLGKGDLAKAREAFEKAL 492 (899)
T ss_pred HHhhC--Ccch---hh---HHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 98743 3221 11 1112234556899999999999887744 667778888899999999999999888764
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (651)
|.+..++..++..+...|++++|.+.|+++.+.+. .+..++..+...+.+.|++++|...++++.+.+. .+...+
T Consensus 493 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~ 570 (899)
T TIGR02917 493 SIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPA 570 (899)
T ss_pred hhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHH
Confidence 55567788888899999999999999999887542 4677888888888899999999999998877643 244455
Q ss_pred HHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 295 NSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 295 ~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
..+...+. |+++.|..+++.+.... +.+...|..+..++...|++++|...|+.+.+. .+.+...+..+..+
T Consensus 571 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 644 (899)
T TIGR02917 571 LALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-----QPDSALALLLLADA 644 (899)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHH
Confidence 55555543 78899999999887653 456778888889999999999999999888763 23456678888888
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
+...|++++|..+|+++.+.. +.+..++..++..+...|++++|..+++.+.+.. +.+...+..+...+.+.|++++|
T Consensus 645 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A 722 (899)
T TIGR02917 645 YAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAA 722 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHH
Confidence 889999999999998888764 3367788888888888999999999998888775 55667788888888888999999
Q ss_pred HHHHHHhhhcccccccccc------cCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh
Q 006303 453 FRLFRSWTLSKTQVALGED------YDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 526 (651)
.+.|+.+............ ..+.......... .... ..+.+...+..+...+.
T Consensus 723 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~-------------------~~l~--~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 723 IQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE-------------------AWLK--THPNDAVLRTALAELYL 781 (899)
T ss_pred HHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH-------------------HHHH--hCCCCHHHHHHHHHHHH
Confidence 9998887765432210000 0000000000000 0000 01345667777777665
Q ss_pred --hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 527 --TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFS 604 (651)
Q Consensus 527 --~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~ 604 (651)
++.++|..+|+++.+.. +.+..+++.+...+...|+ .+|..+++++.+.. +-+..++..+...+.+.|++++|.+
T Consensus 782 ~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~ 858 (899)
T TIGR02917 782 AQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALP 858 (899)
T ss_pred HCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHH
Confidence 58999999999999864 3578889999999999999 88999999998853 2356677889999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
+++++.+.+- .+..++..+..++.+.|+.++|.+ ++++|+
T Consensus 859 ~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~---~~~~~~ 898 (899)
T TIGR02917 859 LLRKAVNIAP-EAAAIRYHLALALLATGRKAEARK---ELDKLL 898 (899)
T ss_pred HHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHH---HHHHHh
Confidence 9999998763 388999999999999999999887 566554
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-27 Score=266.44 Aligned_cols=540 Identities=12% Similarity=0.062 Sum_probs=411.2
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+...|.. ...+..++..+...|++++|+..++.+... .|. ....+..++..+...|++++|...|++
T Consensus 318 ~~~~~~~~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 388 (899)
T TIGR02917 318 LNQILKYAPNS-HQARRLLASIQLRLGRVDEAIATLSPALGL--DPD------DPAALSLLGEAYLALGDFEKAAEYLAK 388 (899)
T ss_pred HHHHHHhCCCC-hHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCC------CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44445555665 777888999999999999999999999877 443 234455677789999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
+.+. .|+.. ..+......+...|++++|+..++.+.... |........++..+.+.|++++|..++..+
T Consensus 389 ~~~~--~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 458 (899)
T TIGR02917 389 ATEL--DPENA------AARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQFDKALAAAKKLE 458 (899)
T ss_pred HHhc--CCCCH------HHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9884 44332 122223334556899999999999998755 555666777888999999999999988765
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF 294 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~ 294 (651)
|.+..++..++..|...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+.+.+.+. .+...+
T Consensus 459 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~ 536 (899)
T TIGR02917 459 KKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP-DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAI 536 (899)
T ss_pred HhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHH
Confidence 56678899999999999999999999999987532 3566788899999999999999999999987653 355666
Q ss_pred HHHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 295 NSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 295 ~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
..+...+ .|+.++|...++++...+ +.+...+..+...+...|++++|.++++.+... .+.+...|..+..+
T Consensus 537 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~ 610 (899)
T TIGR02917 537 LALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADA-----APDSPEAWLMLGRA 610 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHH
Confidence 6666654 489999999999998765 456778888999999999999999999999863 35677899999999
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
|...|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+|+++.+.. +.+...+..+...+...|++++|
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 688 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESA 688 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998764 3467788999999999999999999999998864 55678899999999999999999
Q ss_pred HHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHH
Q 006303 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYY 530 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~ 530 (651)
.++++.+..............+ .+....+... ..+..+.+.....|+..++..+...+. ++.+
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~g~~~------------~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 753 (899)
T TIGR02917 689 KKIAKSLQKQHPKAALGFELEG---DLYLRQKDYP------------AAIQAYRKALKRAPSSQNAIKLHRALLASGNTA 753 (899)
T ss_pred HHHHHHHHhhCcCChHHHHHHH---HHHHHCCCHH------------HHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHH
Confidence 9999998766432111100000 0000000000 000001111112454455555666655 4788
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+|...++.+.+.. +.+...+..+...|...|++++|..+|+++.+.. +.+...++.+...+...|+ .+|+++++++.
T Consensus 754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~ 830 (899)
T TIGR02917 754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKAL 830 (899)
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHH
Confidence 8888888887753 3467788888888888899999999999888764 3467788888888888888 77999888887
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 611 HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 611 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
+.. +-+..++..+..++.+.|++++|.+ .|+++++
T Consensus 831 ~~~-~~~~~~~~~~~~~~~~~g~~~~A~~---~~~~a~~ 865 (899)
T TIGR02917 831 KLA-PNIPAILDTLGWLLVEKGEADRALP---LLRKAVN 865 (899)
T ss_pred hhC-CCCcHHHHHHHHHHHHcCCHHHHHH---HHHHHHh
Confidence 642 3345667778888888999888766 6666654
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-20 Score=213.06 Aligned_cols=558 Identities=12% Similarity=0.035 Sum_probs=343.3
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHH----------HHHhHHHHhhhhcC
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLE----------MVASGIVKSIREGR 128 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~----------~~~~~~~~~~~~g~ 128 (651)
+.+.+..+|+. +..+..++..+...|+.++|.+.++++.+. .|+......... .....+..+...|+
T Consensus 51 l~kl~~~~p~~-p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~--~P~~~~~~~~~~~~~~~~~~~~~~l~~A~ll~~~g~ 127 (1157)
T PRK11447 51 LYRLELIDPNN-PDVIAARFRLLLRQGDSDGAQKLLDRLSQL--APDSNAYRSSRTTMLLSTPEGRQALQQARLLATTGR 127 (1157)
T ss_pred HHHHHccCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHhcCCchhhHHHHHHHHHhCCC
Confidence 55556667887 889999999999999999999999999998 554422211111 11234556889999
Q ss_pred hhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH
Q 006303 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN 208 (651)
Q Consensus 129 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 208 (651)
+++|+..|+++.+.. |.... .... +.... ....|+.++|++.|+++.+.. |.+...+..++..+...|+.+
T Consensus 128 ~~eA~~~~~~~l~~~--p~~~~--la~~-y~~~~--~~~~g~~~~A~~~L~~ll~~~--P~~~~~~~~LA~ll~~~g~~~ 198 (1157)
T PRK11447 128 TEEALASYDKLFNGA--PPELD--LAVE-YWRLV--AKLPAQRPEAINQLQRLNADY--PGNTGLRNTLALLLFSSGRRD 198 (1157)
T ss_pred HHHHHHHHHHHccCC--CCChH--HHHH-HHHHH--hhCCccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHccCCHH
Confidence 999999999999742 32210 0111 11111 123599999999999999865 788888899999999999999
Q ss_pred HHHHHhhhCCCCC--------------------------------------cc--------------------HHHHHHH
Q 006303 209 LAIRYACIVPRAD--------------------------------------IL--------------------FCNFVRE 230 (651)
Q Consensus 209 ~A~~~~~~~~~~~--------------------------------------~~--------------------~~~l~~~ 230 (651)
+|+..++++.... .. .......
T Consensus 199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~ 278 (1157)
T PRK11447 199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA 278 (1157)
T ss_pred HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence 9998877641100 00 0012445
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHH----------
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMN---------- 299 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~---------- 299 (651)
+...|++++|+..|++..+... .+..++..+..++.+.|++++|+..|++..+..... ....|..++.
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P-~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~ 357 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANP-KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ 357 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence 6778999999999999988432 367889999999999999999999999998764332 2222222211
Q ss_pred ----hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc
Q 006303 300 ----VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (651)
Q Consensus 300 ----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (651)
...|++++|...|+++.+.. +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...|.
T Consensus 358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~- 430 (1157)
T PRK11447 358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYR- 430 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHH-
Confidence 13479999999999998864 3466778889999999999999999999998741 233444444444442
Q ss_pred ccCHHHHHHHHHHHHHCCC--------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 376 AKWWQMALKVKEDMLSAGV--------TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~--------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.++.++|..+++.+..... ......+..+...+...|++++|.+.|++..+.. +-+...+..+...|.+.|
T Consensus 431 ~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G 509 (1157)
T PRK11447 431 QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAG 509 (1157)
T ss_pred hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 2344555544443321100 0001123344444455555555555555554442 223334444444555555
Q ss_pred ChhHHHHHHHHhhhcccccccccc-------cCCch----hhhhhh------------hhhcc-ccccCCCCc-cCCCc-
Q 006303 448 QFDRAFRLFRSWTLSKTQVALGED-------YDGNT----DRISNM------------EHKDK-QSITNTPNF-VPNSH- 501 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~-------~~~~~----~~~~~~------------~~~~~-~~~~~~~~~-~~~~~- 501 (651)
++++|...++++............ ..+.. ..+..+ ..... ......... .....
T Consensus 510 ~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 510 QRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 555555555544432211000000 00000 000000 00000 000000000 00000
Q ss_pred --ccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 502 --YSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 502 --~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
....++. .+.+...+..+...+. ++.++|...|+.+.+.. +.+...+..++..|...|++++|.+.++.+.+.
T Consensus 590 ~eA~~~l~~--~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~ 666 (1157)
T PRK11447 590 AEAEALLRQ--QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT 666 (1157)
T ss_pred HHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 0001111 1223344444444443 47899999999988853 235778888999999999999999999988764
Q ss_pred CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 578 GMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI--QP---NLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 578 ~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~p---~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.| +...+..+..++...|++++|.++++++....- .| +...+..+...+...|+.++|.+.++
T Consensus 667 --~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~ 735 (1157)
T PRK11447 667 --ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYK 735 (1157)
T ss_pred --CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 33 455667788888899999999999999875421 22 23466667788889999988887554
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-20 Score=207.36 Aligned_cols=460 Identities=12% Similarity=0.042 Sum_probs=307.2
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCC-----------------
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVA----------------- 145 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~----------------- 145 (651)
..|++++|+..|+++++. .|+. ..+...++..+...|++++|+..|+++.+....
T Consensus 159 ~~g~~~~A~~~L~~ll~~--~P~~------~~~~~~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~ 230 (1157)
T PRK11447 159 LPAQRPEAINQLQRLNAD--YPGN------TGLRNTLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPV 230 (1157)
T ss_pred CCccHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCC
Confidence 458888999999998888 5652 334456677788899999999999888653210
Q ss_pred ---------------ccccccchhhHHHH--------------HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 146 ---------------PLELFDGSGFKLLK--------------NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 146 ---------------~~~~~~~~~~~~l~--------------~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
|+..........+. .....+...|++++|+..|++.+... |.+...+..
T Consensus 231 ~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~ 308 (1157)
T PRK11447 231 SDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGA 308 (1157)
T ss_pred ChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHH
Confidence 00000000000000 00223455799999999999998854 778888899
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCc--cH------------HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHh
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADI--LF------------CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI 258 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~--~~------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 258 (651)
++.++.+.|++++|...|++. |.+.. .+ ......+.+.|++++|++.|+++.+... .+...
T Consensus 309 Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P-~~~~a 387 (1157)
T PRK11447 309 LGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN-TDSYA 387 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHH
Confidence 999999999999999988764 32221 11 1235567788999999999999988532 35667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc-CChHHHHHHHHHHHHCCC--------CCCHHhHHH
Q 006303 259 CRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGV--------MADMASYNI 329 (651)
Q Consensus 259 ~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~--------~~~~~~~~~ 329 (651)
+..+..++...|++++|++.|++..+.... +...+..+...+. ++.++|..+++.+..... ......+..
T Consensus 388 ~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~ 466 (1157)
T PRK11447 388 VLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQ 466 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHH
Confidence 888889999999999999999998876432 3334444444433 466777777765533210 001223445
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 409 (651)
+...+...|++++|++.|++..+. .+-+...+..+...|.+.|++++|...++++.+... .+...+..+...+.
T Consensus 467 ~a~~~~~~g~~~eA~~~~~~Al~~-----~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P-~~~~~~~a~al~l~ 540 (1157)
T PRK11447 467 QAEALENQGKWAQAAELQRQRLAL-----DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKP-NDPEQVYAYGLYLS 540 (1157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 666777788888888888888763 133455667778888888888888888888776532 24444444444455
Q ss_pred hcCCHHHHHHHHHHHHHcC---------------------------------------CCCCHHHHHHHHHHHHhcCChh
Q 006303 410 NAGLVEQAMHLFEEMLQAG---------------------------------------CEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~---------------------------------------~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
..++.++|...++.+.... .+.+...+..+...+.+.|+++
T Consensus 541 ~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~ 620 (1157)
T PRK11447 541 GSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYA 620 (1157)
T ss_pred hCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence 5666666666665543221 1233334444444455555555
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC-CHHHHHHHHHHHh--h
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACC--T 527 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~--~ 527 (651)
+|++.|++.... .| +...+..+...+. +
T Consensus 621 ~A~~~y~~al~~-------------------------------------------------~P~~~~a~~~la~~~~~~g 651 (1157)
T PRK11447 621 AARAAYQRVLTR-------------------------------------------------EPGNADARLGLIEVDIAQG 651 (1157)
T ss_pred HHHHHHHHHHHh-------------------------------------------------CCCCHHHHHHHHHHHHHCC
Confidence 555555544432 33 4666777777765 5
Q ss_pred cHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHH
Q 006303 528 DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM--SP---DVVAYTTAIKVCVRSKRLKQ 601 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~p---~~~~~~~li~~~~~~g~~~~ 601 (651)
+.++|.+.++.+.+. .| +..++..+..++...|++++|.++++++..... .| +...+..+...+...|++++
T Consensus 652 ~~~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 652 DLAAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CHHHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 899999999988764 33 456677788899999999999999999987432 12 23466677888999999999
Q ss_pred HHHHHHHHHH
Q 006303 602 AFSLFEEMKH 611 (651)
Q Consensus 602 A~~~~~~m~~ 611 (651)
|.+.|++...
T Consensus 730 A~~~y~~Al~ 739 (1157)
T PRK11447 730 ALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHh
Confidence 9999999975
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.9e-21 Score=181.56 Aligned_cols=370 Identities=14% Similarity=0.113 Sum_probs=315.4
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
...+++..|.. .+.|..++..+-..|++.+|+.+|+.+++. .|. ..+++.+++.++..+|+.+.|...|.+
T Consensus 105 ~~~a~r~~~q~-ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~------fida~inla~al~~~~~~~~a~~~~~~ 175 (966)
T KOG4626|consen 105 SLLAIRKNPQG-AEAYSNLANILKERGQLQDALALYRAAIEL--KPK------FIDAYINLAAALVTQGDLELAVQCFFE 175 (966)
T ss_pred hhhhhhccchH-HHHHHHHHHHHHHhchHHHHHHHHHHHHhc--Cch------hhHHHhhHHHHHHhcCCCcccHHHHHH
Confidence 34455566666 889999999999999999999999999998 776 477888889999999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
.++ +.|+.....+-...|++ ..|+.++|...|.+.++. .|....+|+.++..+..+|+.-+|++.|...
T Consensus 176 alq--lnP~l~ca~s~lgnLlk------a~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAv 245 (966)
T KOG4626|consen 176 ALQ--LNPDLYCARSDLGNLLK------AEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAV 245 (966)
T ss_pred HHh--cCcchhhhhcchhHHHH------hhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhh
Confidence 998 67776655555455554 279999999999998874 4888999999999999999999999999875
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IY 292 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~ 292 (651)
|.-..+|..|...|-..+.++.|+..|.+... ..| ...++..+...|-..|..+-|++.|++..+. .|+ ..
T Consensus 246 kldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~--lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~ 321 (966)
T KOG4626|consen 246 KLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALN--LRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPD 321 (966)
T ss_pred cCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHh--cCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchH
Confidence 34458899999999999999999999999887 456 4678888888899999999999999999887 444 45
Q ss_pred HHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHH
Q 006303 293 VFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTI 369 (651)
Q Consensus 293 ~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l 369 (651)
.|+.+-.+.. |+..+|.+.|.+..... +....+.+.|...|...|.+++|..+|....+ +.|. ...++.|
T Consensus 322 Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~------v~p~~aaa~nNL 394 (966)
T KOG4626|consen 322 AYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALE------VFPEFAAAHNNL 394 (966)
T ss_pred HHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHh------hChhhhhhhhhH
Confidence 6788877754 89999999999998864 23467889999999999999999999999987 4454 4578999
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEAC 447 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g 447 (651)
...|-+.|++++|+..|++.++. .|+ ...|+.+...|-..|+++.|...+.+.+..+ |. ....+.|...|-..|
T Consensus 395 a~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n--Pt~AeAhsNLasi~kDsG 470 (966)
T KOG4626|consen 395 ASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQIN--PTFAEAHSNLASIYKDSG 470 (966)
T ss_pred HHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC--cHHHHHHhhHHHHhhccC
Confidence 99999999999999999999875 554 5689999999999999999999999998864 43 347888999999999
Q ss_pred ChhHHHHHHHHhhhc
Q 006303 448 QFDRAFRLFRSWTLS 462 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~ 462 (651)
++.+|++-|++.++.
T Consensus 471 ni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 471 NIPEAIQSYRTALKL 485 (966)
T ss_pred CcHHHHHHHHHHHcc
Confidence 999999999987753
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-20 Score=176.70 Aligned_cols=441 Identities=15% Similarity=0.151 Sum_probs=281.7
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+++.....+.. ......|..-.-+.|++++|++........ +|..-..++..++. +....+++.....-..
T Consensus 37 v~qq~~~t~~~-~~~~l~lah~~yq~gd~~~a~~h~nmv~~~--d~t~~~~llll~ai------~~q~~r~d~s~a~~~~ 107 (966)
T KOG4626|consen 37 VLQQFNKTHEG-SDDRLELAHRLYQGGDYKQAEKHCNMVGQE--DPTNTERLLLLSAI------FFQGSRLDKSSAGSLL 107 (966)
T ss_pred HHHHhccCCcc-chhHHHHHHHHHhccCHHHHHHHHhHhhcc--CCCcccceeeehhh------hhcccchhhhhhhhhh
Confidence 44445555555 444667777778899999999998888776 55543333332222 4555555554443333
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
..+ ..|. .+..++-+.+ .+...|+.++|+..|+.+++.. |+...+|..++.++...|+.+.|.+.|...
T Consensus 108 a~r--~~~q---~ae~ysn~aN---~~kerg~~~~al~~y~~aiel~--p~fida~inla~al~~~~~~~~a~~~~~~al 177 (966)
T KOG4626|consen 108 AIR--KNPQ---GAEAYSNLAN---ILKERGQLQDALALYRAAIELK--PKFIDAYINLAAALVTQGDLELAVQCFFEAL 177 (966)
T ss_pred hhh--ccch---HHHHHHHHHH---HHHHhchHHHHHHHHHHHHhcC--chhhHHHhhHHHHHHhcCCCcccHHHHHHHH
Confidence 333 2221 1234444444 4445899999999999998844 888888888888888888888887766543
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV 293 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~ 293 (651)
|...-+...+...+-..|++++|...|.+..+. .|. ..+|+.|...+...|+...|++.|++....
T Consensus 178 qlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl-------- 247 (966)
T KOG4626|consen 178 QLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL-------- 247 (966)
T ss_pred hcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------
Confidence 322333444566666678888888888777763 343 557888888888888888888888777654
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHH
Q 006303 294 FNSLMNVNAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVK 371 (651)
Q Consensus 294 ~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~ 371 (651)
.|+ ...|-.|...|...+.++.|...|.+...+ .|+ ...+..|..
T Consensus 248 ---------------------------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l------rpn~A~a~gNla~ 294 (966)
T KOG4626|consen 248 ---------------------------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL------RPNHAVAHGNLAC 294 (966)
T ss_pred ---------------------------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc------CCcchhhccceEE
Confidence 222 345555666666666666666666665542 233 345555555
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.|-..|.++.|++.|++.++.... -...|+.|..++-..|++.+|...+.+..... +......+.|...|...|.+++
T Consensus 295 iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~ 372 (966)
T KOG4626|consen 295 IYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEE 372 (966)
T ss_pred EEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchH
Confidence 666666666666666666654211 24456666666666666666666666665542 2233455566666666666666
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-HHHHHHHHHHHh--hc
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKACC--TD 528 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~~--~~ 528 (651)
|..+|+...+ +.|. ....|.|...|. ++
T Consensus 373 A~~ly~~al~-------------------------------------------------v~p~~aaa~nNLa~i~kqqgn 403 (966)
T KOG4626|consen 373 ATRLYLKALE-------------------------------------------------VFPEFAAAHNNLASIYKQQGN 403 (966)
T ss_pred HHHHHHHHHh-------------------------------------------------hChhhhhhhhhHHHHHHhccc
Confidence 6666655433 2333 223444444443 25
Q ss_pred HHHHHHHHHHHHHcCCCCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPN-HISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
+++|..-+++.++ +.|+ ...|+.+...|-..|+++.|.+.+.+.+.. .|. ...++.|...|-..|++.+|++-+
T Consensus 404 l~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY 479 (966)
T KOG4626|consen 404 LDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSY 479 (966)
T ss_pred HHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHH
Confidence 5666666666665 5565 447888899999999999999999988873 454 467888999999999999999999
Q ss_pred HHHHHCCCCCCH
Q 006303 607 EEMKHYQIQPNL 618 (651)
Q Consensus 607 ~~m~~~g~~p~~ 618 (651)
+...+ ++||.
T Consensus 480 ~~aLk--lkPDf 489 (966)
T KOG4626|consen 480 RTALK--LKPDF 489 (966)
T ss_pred HHHHc--cCCCC
Confidence 98884 56765
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-17 Score=178.75 Aligned_cols=499 Identities=9% Similarity=-0.060 Sum_probs=291.3
Q ss_pred chhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHH
Q 006303 58 ALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLK 137 (651)
Q Consensus 58 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~ 137 (651)
.+.+++..+|++ ...+..|+..|...|++++|+..+++..+. +|+.... ...+ ...+++++|...++
T Consensus 66 ~l~~Al~~dP~n-~~~~~~LA~~yl~~g~~~~A~~~~~kAv~l--dP~n~~~------~~~L----a~i~~~~kA~~~ye 132 (987)
T PRK09782 66 EFEYIHQQVPDN-IPLTLYLAEAYRHFGHDDRARLLLEDQLKR--HPGDARL------ERSL----AAIPVEVKSVTTVE 132 (987)
T ss_pred HHHHHHHhCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHH------HHHH----HHhccChhHHHHHH
Confidence 367778888998 888899999999999999999999999988 6653222 1111 12288889999999
Q ss_pred HHHHcCCCccccccchhhHHHHHH-----HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHH
Q 006303 138 KLNELGVAPLELFDGSGFKLLKNE-----CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
++.+. .|+..- .+..+... ...|.+. ++|.+.++ .......|........+.+.|.+.+++++|++
T Consensus 133 ~l~~~--~P~n~~---~~~~la~~~~~~~~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~ 203 (987)
T PRK09782 133 ELLAQ--QKACDA---VPTLRCRSEVGQNALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADT 203 (987)
T ss_pred HHHHh--CCCChh---HHHHHHHHhhccchhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHH
Confidence 99884 443321 11111111 0112222 33333332 11111111222223333555555555555555
Q ss_pred HhhhC----CCCCccHHHHHHHHhh-cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 213 YACIV----PRADILFCNFVREFGK-KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
.+..+ |.+......|...|.. .++ +.+..+++.. +..+...+..+.+.|.+.|+.++|.++++++...-.
T Consensus 204 lL~~L~k~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~ 278 (987)
T PRK09782 204 LYNEARQQNTLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT 278 (987)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence 54443 2222333344444444 233 4444443321 123444555555555555555555555555433211
Q ss_pred c-ccHHHHHH----------------------------------------------------------------------
Q 006303 288 T-LNIYVFNS---------------------------------------------------------------------- 296 (651)
Q Consensus 288 ~-~~~~~~~~---------------------------------------------------------------------- 296 (651)
. |...+|.-
T Consensus 279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~ 358 (987)
T PRK09782 279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK 358 (987)
T ss_pred CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence 1 11111110
Q ss_pred -------------------------HHHhhcCChHHHHHHHHHHHHC-C-CCCCHHhHHHHHHHHHhcCC---HHHHHH-
Q 006303 297 -------------------------LMNVNAHDLKFTLEVYKNMQKL-G-VMADMASYNILLKACCLAGN---TVLAQE- 345 (651)
Q Consensus 297 -------------------------ll~~~~~~~~~a~~~~~~m~~~-~-~~~~~~~~~~ll~~~~~~g~---~~~a~~- 345 (651)
.+....|+.++|.++|...... + ...+......++..|.+.+. ..++..
T Consensus 359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l 438 (987)
T PRK09782 359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL 438 (987)
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence 0111123344444444444331 1 11223333355555555444 122211
Q ss_pred ---------------------HHHHHHHhhhcCCccc--cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 346 ---------------------IYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 346 ---------------------~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
.++.+.... +..++ +...|..+..++.. ++.++|...+.+.... .|+.....
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al--~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L 513 (987)
T PRK09782 439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLL--GDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHR 513 (987)
T ss_pred ccccccchhHHHHhhhhhhhhhHHHHHHhc--ccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHH
Confidence 122222110 10123 55666777766666 7778888877777665 35554444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.+...+.+.|++++|...|+++... .|+...+..+..++.+.|+.++|...+++....
T Consensus 514 ~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-------------------- 571 (987)
T PRK09782 514 AVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-------------------- 571 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------------------
Confidence 4455556788888888888887654 344445566667778888888888888877643
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCH-HHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 559 (651)
.|+. ..+..+.... .+++++|...+++..+. .|+...|..+...+.
T Consensus 572 -----------------------------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~ 620 (987)
T PRK09782 572 -----------------------------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYR 620 (987)
T ss_pred -----------------------------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHH
Confidence 2322 2222222222 26899999999999884 567888999999999
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
+.|++++|...+++..+.. +-+...++.+..++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+.
T Consensus 621 ~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~ 698 (987)
T PRK09782 621 QRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQH 698 (987)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999853 2256677888889999999999999999998642 3456788899999999999999888
Q ss_pred HHHH
Q 006303 640 CLAV 643 (651)
Q Consensus 640 ~~~~ 643 (651)
.++.
T Consensus 699 ~l~~ 702 (987)
T PRK09782 699 YARL 702 (987)
T ss_pred HHHH
Confidence 5554
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-19 Score=179.82 Aligned_cols=304 Identities=12% Similarity=0.041 Sum_probs=174.0
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHHhhc
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNA 302 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~ 302 (651)
.....+...|++++|+..|+++.+.+. .+..++..+...+...|++++|..+++.+...+..++. ..+..+...+.
T Consensus 40 ~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 40 FKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 334556677888999999998887532 35567888888888889999999988888765322211 12222222221
Q ss_pred --CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHHHHHccc
Q 006303 303 --HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFADAK 377 (651)
Q Consensus 303 --~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~ 377 (651)
|+++.|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+... ..+. ...+..+...+.+.|
T Consensus 119 ~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCC
Confidence 44444444444444331 22344455555555555555555555555443110 0000 112333444444555
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++|+++.+.+......+++.+..+|.+.|++++|..
T Consensus 195 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~--- 270 (389)
T PRK11788 195 DLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLE--- 270 (389)
T ss_pred CHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHH---
Confidence 5555555555554432 112334444445555555555555555555443211112334444444555555554444
Q ss_pred HhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHH
Q 006303 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMN 537 (651)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~ 537 (651)
.++
T Consensus 271 -----------------------------------------------------------------------------~l~ 273 (389)
T PRK11788 271 -----------------------------------------------------------------------------FLR 273 (389)
T ss_pred -----------------------------------------------------------------------------HHH
Confidence 444
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 006303 538 EMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR---SKRLKQAFSLFEEMKHYQI 614 (651)
Q Consensus 538 ~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~ 614 (651)
.+.+. .|+...+..++..+.+.|++++|..+++++.+. .|+...++.++..+.. .|+.++++.++++|.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 44443 355566677888888888999999888888774 6888888887777664 4578888888888887777
Q ss_pred CCCHH
Q 006303 615 QPNLV 619 (651)
Q Consensus 615 ~p~~~ 619 (651)
+|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 77665
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.3e-17 Score=173.51 Aligned_cols=361 Identities=11% Similarity=-0.047 Sum_probs=242.5
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
..+...+..+...|++++|+..|++.+.. .|+ ...+.++...|...|++++|++.+++.++ +.|+.
T Consensus 128 ~~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~-------~~~~~n~a~~~~~l~~~~~Ai~~~~~al~--l~p~~--- 193 (615)
T TIGR00990 128 AKLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPD-------PVYYSNRAACHNALGDWEKVVEDTTAALE--LDPDY--- 193 (615)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc-------hHHHHHHHHHHHHhCCHHHHHHHHHHHHH--cCCCC---
Confidence 34667788899999999999999999987 554 22356777889999999999999999998 45543
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
...+......+...|++++|+..|..+.... +........++..+........+...+...|.+...+..+...+
T Consensus 194 ---~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 194 ---SKALNRRANAYDGLGKYADALLDLTASCIID--GFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 2334444556667899999999887766543 11111112222222222223344455555555544444443333
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHH---HHhcCCHHHHHHHHHHHHhCC-Cccc-HHHHHHHHHh--hcC
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDV---CGICGDYMKSRAIYEDLRSQN-VTLN-IYVFNSLMNV--NAH 303 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~g-~~~~-~~~~~~ll~~--~~~ 303 (651)
...+......-++...+ ..+. ...+..+... ....+++++|.+.|+...+.+ ..|+ ...|+.+-.. ..|
T Consensus 269 -~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g 345 (615)
T TIGR00990 269 -QSFRPKPRPAGLEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKG 345 (615)
T ss_pred -HHccCCcchhhhhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcC
Confidence 22112222222222111 1111 1111111111 123468899999999988764 2233 2333333333 347
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++++|+..|++..+.. +.+...|..+...+...|++++|...|+++.+. .+.+...|..+...+...|++++|.
T Consensus 346 ~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~ 419 (615)
T TIGR00990 346 KHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSEDPDIYYHRAQLHFIKGEFAQAG 419 (615)
T ss_pred CHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 8899999998887753 224668888888999999999999999998774 2445778888999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..|++.++.. +.+...+..+...+.+.|++++|+..|++..+.. +.+...++.+..++...|++++|++.|++....
T Consensus 420 ~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 420 KDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred HHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 9999998874 2366778888889999999999999999988763 445778888999999999999999999887653
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-17 Score=172.66 Aligned_cols=421 Identities=11% Similarity=-0.023 Sum_probs=288.3
Q ss_pred HHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHH
Q 006303 116 VASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEF 195 (651)
Q Consensus 116 ~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 195 (651)
+...+..+...|++++|+..|++.++ ..|+.. .+.+.+..+...|++++|++.+++.++.. |+....+.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~-------~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~ 198 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPV-------YYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALN 198 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchH-------HHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHH
Confidence 34556678999999999999999997 456432 23444556667899999999999998854 88888899
Q ss_pred HHHHHHhcCCChHHHHHHhhhC---CCC-CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIV---PRA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~---~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (651)
.++.++...|++++|...+..+ +.. ......++..+.. ..+........+... ++...+..+...+ ....
T Consensus 199 ~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~~~-~~~~ 272 (615)
T TIGR00990 199 RRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGNYL-QSFR 272 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHHHH-HHcc
Confidence 9999999999999998876543 111 1111111111111 223333333333211 2222333333322 1111
Q ss_pred HHHHHHHHHHHHhCCCccc-----HHHHHHHHHh-hcCChHHHHHHHHHHHHCC-CCC-CHHhHHHHHHHHHhcCCHHHH
Q 006303 272 YMKSRAIYEDLRSQNVTLN-----IYVFNSLMNV-NAHDLKFTLEVYKNMQKLG-VMA-DMASYNILLKACCLAGNTVLA 343 (651)
Q Consensus 272 ~~~a~~~~~~~~~~g~~~~-----~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~-~~~-~~~~~~~ll~~~~~~g~~~~a 343 (651)
......-+....+. .+. .......+.. ..+++++|.+.|+.....+ ..| +...+..+...+...|++++|
T Consensus 273 ~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA 350 (615)
T TIGR00990 273 PKPRPAGLEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEA 350 (615)
T ss_pred CCcchhhhhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHH
Confidence 11111112111111 111 0111111111 2257899999999998765 223 456788888889999999999
Q ss_pred HHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
+..|++.... .|+ ...|..+...+...|++++|...|+++++.. +.+...|..+...+...|++++|...|+
T Consensus 351 ~~~~~kal~l------~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 423 (615)
T TIGR00990 351 LADLSKSIEL------DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQ 423 (615)
T ss_pred HHHHHHHHHc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999873 444 5688889999999999999999999998874 3367889999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcc
Q 006303 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHY 502 (651)
Q Consensus 423 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (651)
+..+.. +.+...+..+..++.+.|++++|+..|++.....
T Consensus 424 kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~--------------------------------------- 463 (615)
T TIGR00990 424 KSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF--------------------------------------- 463 (615)
T ss_pred HHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------------------------
Confidence 999875 4456778888889999999999999999876531
Q ss_pred cccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHH------HHHHHHHHHhcCCChHHHHHHHHHH
Q 006303 503 SSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHI------SWTILIDACGGSGNVEGALQILKIM 574 (651)
Q Consensus 503 ~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~------~~~~li~~~~~~g~~~~A~~~~~~~ 574 (651)
+.+...|+.+...+. +++++|...|+.........+.. .++..+..+...|++++|.+++++.
T Consensus 464 ---------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kA 534 (615)
T TIGR00990 464 ---------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKA 534 (615)
T ss_pred ---------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 223556666666655 58999999999988753221111 1222223344579999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 575 REDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 575 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
.+.. ..+...+..+...+.+.|++++|.++|++..+.
T Consensus 535 l~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 535 LIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 8753 224557889999999999999999999998754
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.9e-18 Score=170.31 Aligned_cols=295 Identities=14% Similarity=0.101 Sum_probs=203.6
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc--cHHHHHHHHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVF 373 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~ 373 (651)
.+.....|+++.|...|.++.+.+ +.+..++..+...+...|++++|..+++.+... +...+ ....+..+...|
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~---~~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSR---PDLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC---CCCCHHHHHHHHHHHHHHH
Confidence 333334456666666666666543 234556777777777778888888777777641 10001 124566777777
Q ss_pred HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCh
Q 006303 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS----QCCNILLQACVEACQF 449 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~g~~ 449 (651)
...|++++|..+|+++.+.. +.+..++..++..+.+.|++++|.+.++.+.+.+..+.. ..+..+...+.+.|++
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 196 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDL 196 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCH
Confidence 77788888888887777652 335667777777777888888888888777765432221 1344556667777888
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--h
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--T 527 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~ 527 (651)
++|...|+++.... +.+...+..+...+. +
T Consensus 197 ~~A~~~~~~al~~~------------------------------------------------p~~~~~~~~la~~~~~~g 228 (389)
T PRK11788 197 DAARALLKKALAAD------------------------------------------------PQCVRASILLGDLALAQG 228 (389)
T ss_pred HHHHHHHHHHHhHC------------------------------------------------cCCHHHHHHHHHHHHHCC
Confidence 88888887765431 112334455555554 3
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
++++|.++++++.+.+......+++.++.+|.+.|++++|...++++.+. .|+...+..++..+.+.|++++|.++++
T Consensus 229 ~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~ 306 (389)
T PRK11788 229 DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLR 306 (389)
T ss_pred CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHH
Confidence 67788888888776432223467888999999999999999999999885 5777777889999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHHhc
Q 006303 608 EMKHYQIQPNLVTYITLLRARSR---YGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 608 ~m~~~g~~p~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~m~~~ 650 (651)
++.+. .|+..++..++..+.. .|+.++ .+.++++|.++
T Consensus 307 ~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~---a~~~~~~~~~~ 347 (389)
T PRK11788 307 EQLRR--HPSLRGFHRLLDYHLAEAEEGRAKE---SLLLLRDLVGE 347 (389)
T ss_pred HHHHh--CcCHHHHHHHHHHhhhccCCccchh---HHHHHHHHHHH
Confidence 99864 6999999999988775 346555 44577777654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-15 Score=164.30 Aligned_cols=520 Identities=11% Similarity=-0.035 Sum_probs=304.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+-.....+...|++++|+..|+++++. +|+. ..++..++..|...|++++|+..+++..+ ..|+...
T Consensus 44 ~~~~f~~a~~~~~~Gd~~~A~~~l~~Al~~--dP~n------~~~~~~LA~~yl~~g~~~~A~~~~~kAv~--ldP~n~~ 113 (987)
T PRK09782 44 IYPRLDKALKAQKNNDEATAIREFEYIHQQ--VPDN------IPLTLYLAEAYRHFGHDDRARLLLEDQLK--RHPGDAR 113 (987)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHH
Confidence 334444445555669999999999999998 8873 44556788899999999999999999998 4554431
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH--------HhcCCChHHHHHHhhhCCCC--
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--------CVNKPDVNLAIRYACIVPRA-- 220 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~A~~~~~~~~~~-- 220 (651)
....+. . .+++++|+.+++++.... |.+..+...+... |.+.+....++. ....+++
T Consensus 114 ---~~~~La----~---i~~~~kA~~~ye~l~~~~--P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~ 180 (987)
T PRK09782 114 ---LERSLA----A---IPVEVKSVTTVEELLAQQ--KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPE 180 (987)
T ss_pred ---HHHHHH----H---hccChhHHHHHHHHHHhC--CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCC
Confidence 222221 1 388899999999999865 7777777777776 778877778887 5555544
Q ss_pred Cc-cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 221 DI-LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 221 ~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
+. ....+...|.+.|++++|++.+.++.+.+. .+......|..+|.. .++ +++..++.. .++-+...+..+.
T Consensus 181 ~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~p-l~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala 254 (987)
T PRK09782 181 GKTLRTDLLQRAIYLKQWSQADTLYNEARQQNT-LSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYA 254 (987)
T ss_pred cHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHH
Confidence 33 344458999999999999999999999764 345557777778887 366 888777553 2334677777777
Q ss_pred Hhhc--CChHHHHHHHHHHHHCCC-CCCHHhHH------------------------------HHHHHHHhcCCHHHHHH
Q 006303 299 NVNA--HDLKFTLEVYKNMQKLGV-MADMASYN------------------------------ILLKACCLAGNTVLAQE 345 (651)
Q Consensus 299 ~~~~--~~~~~a~~~~~~m~~~~~-~~~~~~~~------------------------------~ll~~~~~~g~~~~a~~ 345 (651)
..+. |+.+.|.+++.++...-. .|...++. .++..+.+.++++.+++
T Consensus 255 ~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (987)
T PRK09782 255 TALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQK 334 (987)
T ss_pred HHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 7654 788888888877644311 12222221 12344444555554443
Q ss_pred HHHHHH-----HhhhcCC-------------------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-C-CCCCHH
Q 006303 346 IYGEVK-----HLEAKGV-------------------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-G-VTPNTI 399 (651)
Q Consensus 346 ~~~~~~-----~~~~~~~-------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~-~~~~~~ 399 (651)
+...-. ...-.+. .+-+......+.....+.|+.++|.++|+..... + -.++..
T Consensus 335 ~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (987)
T PRK09782 335 LLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQT 414 (987)
T ss_pred HhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHH
Confidence 321000 0000000 0112222223333344556666666666665541 1 111222
Q ss_pred HHHHHHHHHHhcCC---HHHHHHH----------------------HHHHHHc-CC-CC--CHHHHHHHHHHHHhcCChh
Q 006303 400 TWSSLINACANAGL---VEQAMHL----------------------FEEMLQA-GC-EP--NSQCCNILLQACVEACQFD 450 (651)
Q Consensus 400 ~~~~ll~~~~~~g~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~ll~~~~~~g~~~ 450 (651)
...-++..|.+.+. ..++..+ ++..... +. ++ +...|..+..++.. ++.+
T Consensus 415 l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~ 493 (987)
T PRK09782 415 LMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPG 493 (987)
T ss_pred HHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcH
Confidence 33344444444433 1122111 1111110 01 12 33344444444443 4555
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhh--hhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISN--MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-- 526 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-- 526 (651)
+|...+.+........ .. ....... ..+..... +..+.+.....|+...+..+...+.
T Consensus 494 eAi~a~~~Al~~~Pd~-~~-----~L~lA~al~~~Gr~eeA------------i~~~rka~~~~p~~~a~~~la~all~~ 555 (987)
T PRK09782 494 VALYAWLQAEQRQPDA-WQ-----HRAVAYQAYQVEDYATA------------LAAWQKISLHDMSNEDLLAAANTAQAA 555 (987)
T ss_pred HHHHHHHHHHHhCCch-HH-----HHHHHHHHHHCCCHHHH------------HHHHHHHhccCCCcHHHHHHHHHHHHC
Confidence 5555444443322110 00 0000000 00000000 0000000001333333433333333
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
++.++|...++...+.. ..+...+..+.......|++++|...+++..+. .|+...|..+..++.+.|++++|.+.+
T Consensus 556 Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l 632 (987)
T PRK09782 556 GNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDL 632 (987)
T ss_pred CCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 58889999999998854 223334444445555679999999999999984 578888999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 607 EEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 607 ~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
++..+.. +-+...+..+..++...|+.++|...++
T Consensus 633 ~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~ 667 (987)
T PRK09782 633 RAALELE-PNNSNYQAALGYALWDSGDIAQSREMLE 667 (987)
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 9998653 3345667777779999999999877544
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=9.6e-17 Score=169.16 Aligned_cols=288 Identities=10% Similarity=-0.020 Sum_probs=220.8
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
...+.|+.++|..+++..+... |.+...+..++.++...|++++|...++.+ |.+..++..+...+.+.|++++
T Consensus 51 ~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~ 128 (656)
T PRK15174 51 ACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT 128 (656)
T ss_pred HHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence 3444799999999999888755 777777888888888899999998887775 6777888889999999999999
Q ss_pred HHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006303 240 ALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 240 a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (651)
|+..++++.+. .| +...+..+...+...|++++|...++.+......+....++.......|++++|...++.+...
T Consensus 129 Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~ 206 (656)
T PRK15174 129 VADLAEQAWLA--FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPF 206 (656)
T ss_pred HHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999998874 34 5677888888999999999999999888665443322222222222347888888888888765
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH----HHHHHHHHHHCCC
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM----ALKVKEDMLSAGV 394 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----a~~~~~~m~~~~~ 394 (651)
...++...+..+..++...|++++|...|+.+... .+.+...+..+...+...|++++ |...|++..+...
T Consensus 207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~-----~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P 281 (656)
T PRK15174 207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALAR-----GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS 281 (656)
T ss_pred CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC
Confidence 43334445555667788889999999999888763 23456677788888888898885 7888888887642
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 395 TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 395 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...+..+...+.+.|++++|...+++..+.. +.+...+..+..++.+.|++++|...|+.+...
T Consensus 282 -~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 282 -DNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 366788888888889999999999999888764 344566777788888889999998888877653
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-16 Score=168.65 Aligned_cols=331 Identities=11% Similarity=0.018 Sum_probs=204.2
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
-....+..+.+.|++.+|+.+++..+.. .|.+ .+++..++......|++++|+..++++.+ ..|+..
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~------~~~l~~l~~~~l~~g~~~~A~~~l~~~l~--~~P~~~--- 110 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLT--AKNG------RDLLRRWVISPLASSQPDAVLQVVNKLLA--VNVCQP--- 110 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHh--CCCc------hhHHHHHhhhHhhcCCHHHHHHHHHHHHH--hCCCCh---
Confidence 3344556666777777777777777776 4442 33344455556667777777777777776 344332
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHh
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~ 232 (651)
..+......+.+.|++++|+..+++++... |++.. ++..++..+.
T Consensus 111 ---~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~------------------------------a~~~la~~l~ 155 (656)
T PRK15174 111 ---EDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQ------------------------------IFALHLRTLV 155 (656)
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHH------------------------------HHHHHHHHHH
Confidence 112222234445677777777777776633 44444 4444555555
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLE 310 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~ 310 (651)
..|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++...+..+... ..|++++|..
T Consensus 156 ~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~ 233 (656)
T PRK15174 156 LMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQ 233 (656)
T ss_pred HCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHH
Confidence 555555555555555443221 12222222 2244556666666665555444222222222222222 2255666666
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH----HHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVL----AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.+++..... +.+...+..+...+...|++++ |...|+.+... .+.+...+..+...+...|++++|...+
T Consensus 234 ~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~~~eA~~~l 307 (656)
T PRK15174 234 TGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF-----NSDNVRIVTLYADALIRTGQNEKAIPLL 307 (656)
T ss_pred HHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 666655543 3356677778888888888875 78888888763 2345667888888888889999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNS-QCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...... .+...+..+..++.+.|++++|...|+++.+.+ |+. ..+..+..++...|+.++|...|++....
T Consensus 308 ~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 308 QQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 88887643 255667778888888899999999888888763 333 33444566778889999999888887654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.3e-16 Score=156.85 Aligned_cols=549 Identities=13% Similarity=0.044 Sum_probs=350.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
|...+...|++ .-.+.--+...-..|++..|+.+|..++.. .|...+. ....+...++..|+.+.|+..|.+
T Consensus 153 F~~Vl~~sp~N-il~LlGkA~i~ynkkdY~~al~yyk~al~i--np~~~aD-----~rIgig~Cf~kl~~~~~a~~a~~r 224 (1018)
T KOG2002|consen 153 FHFVLKQSPDN-ILALLGKARIAYNKKDYRGALKYYKKALRI--NPACKAD-----VRIGIGHCFWKLGMSEKALLAFER 224 (1018)
T ss_pred HHHHHhhCCcc-hHHHHHHHHHHhccccHHHHHHHHHHHHhc--CcccCCC-----ccchhhhHHHhccchhhHHHHHHH
Confidence 44444455665 333333333334568999999999998776 3322111 111122335688999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (651)
..+ +.|+.. ..+-.|.-.-..+-....+..++..+...-.. .+.++.+.+.|...|.-.|++..++.+...+-
T Consensus 225 alq--Ldp~~v---~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai 297 (1018)
T KOG2002|consen 225 ALQ--LDPTCV---SALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERVWHLAEHAI 297 (1018)
T ss_pred HHh--cChhhH---HHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHHHHHHHHHH
Confidence 988 556332 11111111111222345566777777666553 37788888899999999999998888755432
Q ss_pred CC-------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH
Q 006303 219 RA-------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (651)
Q Consensus 219 ~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 291 (651)
.+ ...|.-+..+|-.+|++++|...|.+..+....-....+.-+...+.+.|+++.+...|+.+... .|+.
T Consensus 298 ~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~ 375 (1018)
T KOG2002|consen 298 KNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNN 375 (1018)
T ss_pred HhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--Ccch
Confidence 21 25578889999999999999999988877432112345566788899999999999999988876 4454
Q ss_pred HHHHHHHH-hhcC------ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-hhhcCCccccH
Q 006303 292 YVFNSLMN-VNAH------DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH-LEAKGVLKLDV 363 (651)
Q Consensus 292 ~~~~~ll~-~~~~------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~ 363 (651)
.--..++. .|++ ..+.|..++....+.- +.|...|..+...+-.. +...+...|..+.. +...+ -.+.+
T Consensus 376 ~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~-~~ip~ 452 (1018)
T KOG2002|consen 376 YETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKG-KQIPP 452 (1018)
T ss_pred HHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcC-CCCCH
Confidence 43333333 3332 3466777776666543 45677787777766544 44444777776663 33344 34778
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHC---CCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSA---GVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (651)
...|.+...+...|+++.|...|...... ...+|. .+-..+..++-..++.+.|.+.|..+.+. .|.-.
T Consensus 453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YI 530 (1018)
T KOG2002|consen 453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYI 530 (1018)
T ss_pred HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhH
Confidence 88899999999999999999999888754 122233 23344666667778899999999998876 34433
Q ss_pred -HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 435 -CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 435 -~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.|-.+.......+...+|...++.....+..........+.+..-..-..... ..+....+.-...+
T Consensus 531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~------------k~f~~i~~~~~~~~ 598 (1018)
T KOG2002|consen 531 DAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAK------------KKFETILKKTSTKT 598 (1018)
T ss_pred HHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccc------------cHHHHHHhhhccCC
Confidence 33333322233467778888887776544322111111111110000000000 00000111111235
Q ss_pred CHHHHHHHHHHHh--------------hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 514 TTTTYNILMKACC--------------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 514 ~~~~~~~ll~~~~--------------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
|..+.-.|-..|. +..++|.++|.+..+.. +-|...-|.+.-.++..|++.+|..+|.+..+...
T Consensus 599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~ 677 (1018)
T KOG2002|consen 599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS 677 (1018)
T ss_pred chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh
Confidence 5555544444332 13578999999988853 23777788888999999999999999999998643
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-HYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
-...+|-.+..+|..+|++..|+++|+... +..-.-+......|.+++.+.|.+.++.+.+..
T Consensus 678 -~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~ 741 (1018)
T KOG2002|consen 678 -DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLK 741 (1018)
T ss_pred -hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 356678889999999999999999999876 445566788999999999999999998876543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4.6e-15 Score=135.79 Aligned_cols=462 Identities=14% Similarity=0.179 Sum_probs=312.4
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHH-HHHHHHHHhcCCCccccchHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMF-VGLMEVLEEFRLPVKELDEEFRIV 198 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A-~~~~~~~~~~~~~~~~~~~~~~l~ 198 (651)
+.....+|..+++.-+|+.|.+.|+..+......++.++ +-| ...++.-| .+.|-.|...| .+....|
T Consensus 122 L~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV----~~~-Ns~~~~~~E~~~Fv~~~~~~--E~S~~sW---- 190 (625)
T KOG4422|consen 122 LLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLV----TYY-NSSNVPFAEWEEFVGMRNFG--EDSTSSW---- 190 (625)
T ss_pred HHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHH----Hhh-cCCCCcchhHHHHhhccccc--ccccccc----
Confidence 334678999999999999999988777665444443332 222 22333311 12233333333 2222222
Q ss_pred HHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 199 QLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (651)
Q Consensus 199 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (651)
+.|.+ |.-+++..|+.+.++..+|.++|+--..+.|.++|++........+..+||.+|.+-+-..+ .++
T Consensus 191 ----K~G~v--AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~L 260 (625)
T KOG4422|consen 191 ----KSGAV--ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKL 260 (625)
T ss_pred ----ccccH--HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHH
Confidence 23444 44788999999999999999999999999999999999887777899999999987554433 688
Q ss_pred HHHHHhCCCcccHHHHHHHHHhhc--CChH----HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHH
Q 006303 279 YEDLRSQNVTLNIYVFNSLMNVNA--HDLK----FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVL-AQEIYGEVK 351 (651)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~ll~~~~--~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~-a~~~~~~~~ 351 (651)
+.+|.+..+.||..|+|+++.+.+ |+++ .|.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+.
T Consensus 261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~ 340 (625)
T KOG4422|consen 261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQ 340 (625)
T ss_pred HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHH
Confidence 999999999999999999999855 6554 468899999999999999999999999999888654 444444443
Q ss_pred H-hhhc---CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC----CCCC---HHHHHHHHHHHHhcCCHHHHHHH
Q 006303 352 H-LEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG----VTPN---TITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 352 ~-~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
. +..+ ...+.|..-|...+..|.+..+.+-|.++...+.... +.|+ ..-|..+....|+....+.....
T Consensus 341 N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~ 420 (625)
T KOG4422|consen 341 NSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKW 420 (625)
T ss_pred HhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 1111 1122344557778888889999999999887765321 2233 23467778888899999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCC
Q 006303 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (651)
|+.|.-.-+-|+..+...++++..-.+.++-.-+++..+...+..-. ......+......
T Consensus 421 Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r--------~~l~eeil~~L~~------------ 480 (625)
T KOG4422|consen 421 YEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFR--------SDLREEILMLLAR------------ 480 (625)
T ss_pred HHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhh--------HHHHHHHHHHHhc------------
Confidence 99999888889999999999999899999988888888776553110 0000011000000
Q ss_pred cccccccccccCCCHHHHHHHHHHHhhcHHHHHH-HHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC-
Q 006303 501 HYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA-LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG- 578 (651)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~-~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~- 578 (651)
.+-....|...-+.....-|+-+..++.+ --..|.+. .......+.+.-.+.+.|..++|.++|..+.+.+
T Consensus 481 -----~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 481 -----DKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred -----CCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 00001123333444444444444333333 22344443 3455667777788889999999999999996543
Q ss_pred C---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 579 M---SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 579 ~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
- .|.......+++.-.+.++...|...++-|...+...-...-+.++..|.
T Consensus 554 ~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~La~RI~e~f~ 607 (625)
T KOG4422|consen 554 KIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEGLAQRIMEDFA 607 (625)
T ss_pred cCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhHHHHHHHHhcC
Confidence 2 23344444677778888999999999999976554322223444444443
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.8e-15 Score=163.11 Aligned_cols=337 Identities=13% Similarity=0.048 Sum_probs=180.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+.-....+....-.|+.++|+++++.+... .|. ...++..++..+...|++++|+..|++.++. .|+..
T Consensus 15 ~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~--~~~------~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~- 83 (765)
T PRK10049 15 NNQIADWLQIALWAGQDAEVITVYNRYRVH--MQL------PARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQND- 83 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH-
Confidence 555566667777789999999999888764 332 1344566677788999999999999998873 44332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
.........+...|++++|+..+++++... |.+.. +..++.++...|++++|+..++++ |.+..++..
T Consensus 84 -----~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~ 155 (765)
T PRK10049 84 -----DYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTE 155 (765)
T ss_pred -----HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 112222334455799999999999888754 55555 555666666666666665555443 444445555
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+...+...++.+.|++.++.+.. .|+. .....++......+. .
T Consensus 156 la~~l~~~~~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~----------------------------~ 204 (765)
T PRK10049 156 YVQALRNNRLSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTR----------------------------S 204 (765)
T ss_pred HHHHHHHCCChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhccccc----------------------------C
Confidence 55555555666666655554432 1210 001111111100000 0
Q ss_pred hcCCh---HHHHHHHHHHHHC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH
Q 006303 301 NAHDL---KFTLEVYKNMQKL-GVMADMA-SY----NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (651)
Q Consensus 301 ~~~~~---~~a~~~~~~m~~~-~~~~~~~-~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (651)
..+++ +.|++.++.+.+. ...|+.. .+ ...+.++...|++++|+..|+.+.+. +...|+. ....+..
T Consensus 205 ~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~---~~~~P~~-a~~~la~ 280 (765)
T PRK10049 205 EKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAE---GQIIPPW-AQRWVAS 280 (765)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---CCCCCHH-HHHHHHH
Confidence 00112 4455555555432 1112111 11 11122334556666666666666542 1001221 1122355
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCC---HH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTP---NTITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------EPN---SQ 434 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~---~~ 434 (651)
.|...|++++|+.+|+++....... .......+..++.+.|++++|..+++.+.+... .|+ ..
T Consensus 281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~ 360 (765)
T PRK10049 281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ 360 (765)
T ss_pred HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence 6666666777776666665432111 123344455556666677777766666665421 122 12
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..+...+...|+.++|+++++++..
T Consensus 361 a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 361 GQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555666677777777777777654
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.1e-15 Score=161.35 Aligned_cols=424 Identities=11% Similarity=0.014 Sum_probs=270.7
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (651)
-.+......|+.++|+.++++.... .|.. -..+...+..+.+.|++++|+.++++.+... |.+...+..+
T Consensus 20 d~~~ia~~~g~~~~A~~~~~~~~~~--~~~~------a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~l 89 (765)
T PRK10049 20 DWLQIALWAGQDAEVITVYNRYRVH--MQLP------ARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGL 89 (765)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 3344567788889988888888752 2211 1112333335555788888988888887744 6666666677
Q ss_pred HHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 198 VQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
+..+...|++++|...++.+ |.+.. +..+...+...|+.++|+..++++.+..+ .+...+..+..++...|..+
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChH
Confidence 77777777777777666553 44555 66677777777777777777777776322 23445555666666667777
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH-----HhcCCH---HHHHH
Q 006303 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC-----CLAGNT---VLAQE 345 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~g~~---~~a~~ 345 (651)
.|+..++.... .|+. .. ..+ ......++... ...+++ ++|++
T Consensus 168 ~Al~~l~~~~~---~p~~---~~-----------~l~-------------~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~ 217 (765)
T PRK10049 168 PALGAIDDANL---TPAE---KR-----------DLE-------------ADAAAELVRLSFMPTRSEKERYAIADRALA 217 (765)
T ss_pred HHHHHHHhCCC---CHHH---HH-----------HHH-------------HHHHHHHHHhhcccccChhHHHHHHHHHHH
Confidence 77776665543 1220 00 000 00011111111 122233 67788
Q ss_pred HHHHHHHhhhcCCccccHH-HH----HHHHHHHHcccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 346 IYGEVKHLEAKGVLKLDVF-TY----STIVKVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
.++.+.+... ..|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+. ....+...|...|++++|..
T Consensus 218 ~~~~ll~~~~---~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~ 293 (765)
T PRK10049 218 QYDALEALWH---DNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQS 293 (765)
T ss_pred HHHHHHhhcc---cCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHH
Confidence 8888775311 112221 11 11244556789999999999999987532 332 22335778999999999999
Q ss_pred HHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCc
Q 006303 420 LFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496 (651)
Q Consensus 420 ~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (651)
.|+++.+..... .......+..++...|++++|.++++.+..........
T Consensus 294 ~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~--------------------------- 346 (765)
T PRK10049 294 ILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRL--------------------------- 346 (765)
T ss_pred HHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEee---------------------------
Confidence 999988754211 13456667778899999999999999987653210000
Q ss_pred cCCCcccccccccccCCCH---HHHHHHH--HHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHH
Q 006303 497 VPNSHYSSFDKRFSFKPTT---TTYNILM--KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQIL 571 (651)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~---~~~~~ll--~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 571 (651)
.....-.|+. ..+..+. ....++.++|..+++++.... +-+...+..+...+...|++++|++.+
T Consensus 347 ---------~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l 416 (765)
T PRK10049 347 ---------YGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENEL 416 (765)
T ss_pred ---------cCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 0000013442 1222232 233468999999999998753 335778889999999999999999999
Q ss_pred HHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 572 KIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 572 ~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
++..+. .|+ ...+......+...|++++|.++++++++. .|+......+-+.+
T Consensus 417 ~~al~l--~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 417 KKAEVL--EPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHhh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 999985 455 566667777899999999999999999964 57766554444443
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.5e-14 Score=144.41 Aligned_cols=482 Identities=11% Similarity=0.033 Sum_probs=283.2
Q ss_pred cchhhccccCCccchhhhHHHHHhhhc---cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHH
Q 006303 57 TALLSTVRRDLSSRNDYYADMASKLAK---DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVV 133 (651)
Q Consensus 57 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 133 (651)
.++.++++.+|.. ..++..|.-.-.. ...+..+..++.+.-.. .|. +..+++.+...+...|++..++
T Consensus 220 ~a~~ralqLdp~~-v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~------nP~~l~~LAn~fyfK~dy~~v~ 290 (1018)
T KOG2002|consen 220 LAFERALQLDPTC-VSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNE------NPVALNHLANHFYFKKDYERVW 290 (1018)
T ss_pred HHHHHHHhcChhh-HHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCC------CcHHHHHHHHHHhhcccHHHHH
Confidence 4566777777755 5555555433332 24445666666655554 332 2334455666677777777777
Q ss_pred HHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccc-cchHHHHHHHHhcCCChHHHHH
Q 006303 134 GVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
.+...+.... .+...-...+-.+.++ +...|++++|...|-+..+.. +++ ...+..+++.+...|+.+.+..
T Consensus 291 ~la~~ai~~t--~~~~~~aes~Y~~gRs---~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~ 363 (1018)
T KOG2002|consen 291 HLAEHAIKNT--ENKSIKAESFYQLGRS---YHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKF 363 (1018)
T ss_pred HHHHHHHHhh--hhhHHHHHHHHHHHHH---HHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHH
Confidence 7777776642 2222222333444552 333677777777777666544 333 4445567777777777777766
Q ss_pred Hhhh----CCCCCccHHHHHHHHhhcC----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 006303 213 YACI----VPRADILFCNFVREFGKKR----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLR- 283 (651)
Q Consensus 213 ~~~~----~~~~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~- 283 (651)
.|+. .|.+..+...|...|+..+ ..+.|..++.+..+.. +.|...|-.+...+....-+.. +.+|....
T Consensus 364 ~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d 441 (1018)
T KOG2002|consen 364 CFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALD 441 (1018)
T ss_pred HHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHH
Confidence 5544 3666666666666666654 4455555555555532 2356666666666654443333 55544332
Q ss_pred ---hCCCcccHHHHHHHHHh--hcCChHHHHHHHHHHHHC---CCCC------CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 284 ---SQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL---GVMA------DMASYNILLKACCLAGNTVLAQEIYGE 349 (651)
Q Consensus 284 ---~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~---~~~~------~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (651)
..+-.+.....|.+-.. ..|+++.|...|+..... -..+ +..+--.+...+-..++.+.|.+.|..
T Consensus 442 ~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~ 521 (1018)
T KOG2002|consen 442 ILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKS 521 (1018)
T ss_pred HHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHH
Confidence 33333445555555443 336777777766665443 1112 222222345555566777888888887
Q ss_pred HHHhhhcCCccccH-HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 350 VKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 350 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+.+ ..|+- ..|-.+.......+...+|...++...... ..+...++.+...+.+..++..|.+-|+.+.+.-
T Consensus 522 Ilk------ehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~ 594 (1018)
T KOG2002|consen 522 ILK------EHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKT 594 (1018)
T ss_pred HHH------HCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhh
Confidence 776 23443 345555544445567777777777776543 3355556666767777777777777666665532
Q ss_pred -CCCCHHHHHHHHHHHHh------------cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCC
Q 006303 429 -CEPNSQCCNILLQACVE------------ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPN 495 (651)
Q Consensus 429 -~~~~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (651)
..+|.++.-.|.+.|.+ .+..++|+++|.+.+...
T Consensus 595 ~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-------------------------------- 642 (1018)
T KOG2002|consen 595 STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-------------------------------- 642 (1018)
T ss_pred ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC--------------------------------
Confidence 23566666556655432 245677888887776543
Q ss_pred ccCCCcccccccccccCCCHHHHHHH--HHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 496 FVPNSHYSSFDKRFSFKPTTTTYNIL--MKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~~~~l--l~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
+.|...-|.+ +-+.++++..|..||.+..+... -+..+|-.+.++|..+|++..|+++|+.
T Consensus 643 ----------------pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 643 ----------------PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred ----------------cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 2233333333 23344577788888888777532 2456777788888888888888888877
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 574 MRED-GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 574 ~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
..+. .-+-+..+...|.+++.+.|++.+|.+........
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~ 745 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHL 745 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 6653 33446667777888888888888888777776643
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-13 Score=144.50 Aligned_cols=463 Identities=10% Similarity=0.015 Sum_probs=308.8
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHH
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (651)
+-...+.|++..|+..|+++++. .|..-. .+..++..+...|+.++|+..+++... |++. .+..
T Consensus 41 aii~~r~Gd~~~Al~~L~qaL~~--~P~~~~------av~dll~l~~~~G~~~~A~~~~eka~~----p~n~----~~~~ 104 (822)
T PRK14574 41 LIIRARAGDTAPVLDYLQEESKA--GPLQSG------QVDDWLQIAGWAGRDQEVIDVYERYQS----SMNI----SSRG 104 (822)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhh--Cccchh------hHHHHHHHHHHcCCcHHHHHHHHHhcc----CCCC----CHHH
Confidence 34446789999999999999988 665321 111445567788999999999999883 2221 1222
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC-CC--ccHHHHHHHHhhc
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-AD--ILFCNFVREFGKK 234 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~--~~~~~l~~~~~~~ 234 (651)
+...+..+...|++++|+++|+++++.. |++...+..++..+...++.++|++.+..+.. ++ ..+..++..+...
T Consensus 105 llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 105 LASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhc
Confidence 3333345666899999999999999865 77778888888888999999999998887632 22 2233334444445
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
++..+|++.++++.+..+ -+...+..+..++.+.|-...|.++..+-+ +.++-...... +.+.+. +
T Consensus 183 ~~~~~AL~~~ekll~~~P-~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p------~~f~~~~~~~l---~~~~~a----~ 248 (822)
T PRK14574 183 DRNYDALQASSEAVRLAP-TSEEVLKNHLEILQRNRIVEPALRLAKENP------NLVSAEHYRQL---ERDAAA----E 248 (822)
T ss_pred chHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHhCc------cccCHHHHHHH---HHHHHH----H
Confidence 666669999999988531 356777888888888888888887776533 21111111110 001111 1
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHhhhcCCccccHHHH----HHHHHHHHcccCHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNT---VLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 387 (651)
+++.+..++.. ...++ +.|..-++.+.... +..++....| --.+-++...|++.++++.|+
T Consensus 249 ~vr~a~~~~~~----------~~~r~~~~d~ala~~~~l~~~~--~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~ 316 (822)
T PRK14574 249 QVRMAVLPTRS----------ETERFDIADKALADYQNLLTRW--GKDPEAQADYQRARIDRLGALLVRHQTADLIKEYE 316 (822)
T ss_pred HHhhccccccc----------chhhHHHHHHHHHHHHHHHhhc--cCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 11111111100 11222 33344444433211 1123222222 345678889999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG-----CEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...+.+....+-..+.++|...+++++|..+++.+.... ..++......|.-+|...+++++|..+++++...
T Consensus 317 ~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~ 396 (822)
T PRK14574 317 AMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQ 396 (822)
T ss_pred HhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhc
Confidence 99988876567788899999999999999999999997753 1234444678899999999999999999999863
Q ss_pred ccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH---HHHHhhcHHHHHHHHHHH
Q 006303 463 KTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL---MKACCTDYYRVKALMNEM 539 (651)
Q Consensus 463 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~a~~~~~~~ 539 (651)
.. .. -..... ......||-..+..+ ..++.++..+|++.++++
T Consensus 397 ~p-~~-~~~~~~--------------------------------~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l 442 (822)
T PRK14574 397 TP-YQ-VGVYGL--------------------------------PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDL 442 (822)
T ss_pred CC-cE-EeccCC--------------------------------CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 22 00 000000 000024554333322 334567999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006303 540 RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (651)
Q Consensus 540 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (651)
.... +-|......+.+.+...|...+|+++++..... .|+ ..+....+.++...|++.+|.++.+...+. .|+.
T Consensus 443 ~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~--~Pe~ 517 (822)
T PRK14574 443 SSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVISR--SPED 517 (822)
T ss_pred HHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--CCCc
Confidence 7753 348889999999999999999999999777764 444 556667888899999999999999988753 5666
Q ss_pred HHHHH
Q 006303 619 VTYIT 623 (651)
Q Consensus 619 ~~~~~ 623 (651)
.....
T Consensus 518 ~~~~~ 522 (822)
T PRK14574 518 IPSQE 522 (822)
T ss_pred hhHHH
Confidence 54443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-13 Score=144.81 Aligned_cols=425 Identities=11% Similarity=0.039 Sum_probs=307.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccHHHH--HHHHhhcCCHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNF--VREFGKKRDLVSA 240 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l--~~~~~~~g~~~~a 240 (651)
..+.|+++.|+..|++.++.. |........++..+...|+.++|+.++++... +...+..+ +..|...|++++|
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~A 121 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAG--PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQA 121 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhC--ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 345799999999999998855 65542333778888889999999999988632 22333333 6688889999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~ 318 (651)
+++|+++.+... -+...+..++..+...++.++|++.++.+... .|+...+..+...+ .++..+|++.++++.+.
T Consensus 122 iely~kaL~~dP-~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 122 LALWQSSLKKDP-TNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred HHHHHHHHhhCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 999999998543 24667778888899999999999999999877 45555554443333 24555699999999987
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH------HHHHHHH-----HcccCH---HHHHH
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY------STIVKVF-----ADAKWW---QMALK 384 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~------~~l~~~~-----~~~~~~---~~a~~ 384 (651)
. +-+...+..++.++.+.|-...|.++.++-..+ +.+....+ ..+++.- ....++ +.|+.
T Consensus 199 ~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-----f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala 272 (822)
T PRK14574 199 A-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-----VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALA 272 (822)
T ss_pred C-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-----cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHH
Confidence 5 446778888999999999999999887765432 22221111 1111110 022333 34555
Q ss_pred HHHHHHHC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 385 VKEDMLSA-GVTPNT-----ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 385 ~~~~m~~~-~~~~~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
-++.+... +..|.. ....-.+-++...|+..++++.|+.+...+.+....+-..+.++|...+++++|..+|+.
T Consensus 273 ~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~ 352 (822)
T PRK14574 273 DYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSS 352 (822)
T ss_pred HHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence 55555542 222322 233355668889999999999999999988776777899999999999999999999999
Q ss_pred hhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHH
Q 006303 459 WTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALM 536 (651)
Q Consensus 459 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~ 536 (651)
+....... ....++......|..++. .++++|..++
T Consensus 353 ~~~~~~~~------------------------------------------~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 353 LYYSDGKT------------------------------------------FRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred Hhhccccc------------------------------------------cCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 86543210 001334444567778886 4899999999
Q ss_pred HHHHHcCC-----------CC--cHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 537 NEMRTVGL-----------SP--NHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 537 ~~~~~~~~-----------~p--~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
+.+.+.-. .| |-. .+..++..+...|++.+|++.++++.... +-|......+...+...|.+.+|
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A 469 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA 469 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 99987321 12 222 33456677889999999999999998853 34788889999999999999999
Q ss_pred HHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPN-LVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.+.++..... .|+ ..+......++...|++.+|+.++.-+.
T Consensus 470 ~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 470 EQELKAVESL--APRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHhhh--CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 9999777644 454 4667778888999999999988765443
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-14 Score=128.57 Aligned_cols=426 Identities=14% Similarity=0.106 Sum_probs=264.8
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCC-----Cc
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRA-----DI 222 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~-----~~ 222 (651)
..+|+.|.+.+..|.....+.+|+..|+-++.....|..-..-..++..+.+..++.+|+++++.. |.- ..
T Consensus 198 dltfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rik 277 (840)
T KOG2003|consen 198 DLTFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIK 277 (840)
T ss_pred cchHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHH
Confidence 346778888888888889999999999999887777776666666788888999999999987764 321 14
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC------------ccc
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV------------TLN 290 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~------------~~~ 290 (651)
..+.+.-.+.+.|.+++|+..|+...+ ..|+..+--.|+-++..-|+.++..+.|.+|..... .|+
T Consensus 278 il~nigvtfiq~gqy~dainsfdh~m~--~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 278 ILNNIGVTFIQAGQYDDAINSFDHCME--EAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred HHhhcCeeEEecccchhhHhhHHHHHH--hCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 566677778899999999999999887 458877666666666678999999999999876432 234
Q ss_pred HHHHHHHHHh-----hc-C---ChHHHHHHHHHHHHCCCCCCHHh-------------H--------HHHHHHHHhcCCH
Q 006303 291 IYVFNSLMNV-----NA-H---DLKFTLEVYKNMQKLGVMADMAS-------------Y--------NILLKACCLAGNT 340 (651)
Q Consensus 291 ~~~~~~ll~~-----~~-~---~~~~a~~~~~~m~~~~~~~~~~~-------------~--------~~ll~~~~~~g~~ 340 (651)
....+..|.. .. . +.+.++-.--.++.--+.|+-.. + ..-...+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 4444444432 11 1 11222211111221112222100 0 1123457899999
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHH-HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYS-TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
+.|+++++-..+.. . -..+...-| .++..+.-..++..|..+-+..+... .-+....+.-.+.....|++++|.+
T Consensus 436 ~~aieilkv~~~kd--n-k~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~ 511 (840)
T KOG2003|consen 436 EGAIEILKVFEKKD--N-KTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAE 511 (840)
T ss_pred HHHHHHHHHHHhcc--c-hhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHH
Confidence 99999998776521 1 011111111 11221211223444444444443221 1122222222222233444444444
Q ss_pred HHHHHHHcCC---------------------------------CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccc
Q 006303 420 LFEEMLQAGC---------------------------------EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466 (651)
Q Consensus 420 ~~~~~~~~~~---------------------------------~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 466 (651)
.+++....+- ..+..+...+...|....+...|++++.+....
T Consensus 512 ~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl---- 587 (840)
T KOG2003|consen 512 FYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL---- 587 (840)
T ss_pred HHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc----
Confidence 4444443322 223334444444444444444444444332211
Q ss_pred ccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCC
Q 006303 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGL 544 (651)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~ 544 (651)
++.|+..++-|...|-+ +-.+|.+.+-+--+. +
T Consensus 588 --------------------------------------------ip~dp~ilskl~dlydqegdksqafq~~ydsyry-f 622 (840)
T KOG2003|consen 588 --------------------------------------------IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-F 622 (840)
T ss_pred --------------------------------------------CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-c
Confidence 34567778888777765 455666654443332 3
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV-RSKRLKQAFSLFEEMKHYQIQPNLVTYIT 623 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 623 (651)
+-+..|...|...|....-++++..+|++..- ++|+..-|..+|..|. +.|++.+|+.+++...+. ++-|...+..
T Consensus 623 p~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkf 699 (840)
T KOG2003|consen 623 PCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKF 699 (840)
T ss_pred CcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHH
Confidence 44788888888889999999999999998865 6899999998887665 589999999999999864 7889999999
Q ss_pred HHHHHHhcCCHH
Q 006303 624 LLRARSRYGSLH 635 (651)
Q Consensus 624 l~~~~~~~g~~~ 635 (651)
|++.|...|..+
T Consensus 700 lvri~~dlgl~d 711 (840)
T KOG2003|consen 700 LVRIAGDLGLKD 711 (840)
T ss_pred HHHHhccccchh
Confidence 999998888643
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.8e-11 Score=112.61 Aligned_cols=409 Identities=15% Similarity=0.156 Sum_probs=274.1
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchH--HHHHHHHhcCCChHHH-HHHhhhC----CCCCccHHHHHHHHhhcCCH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEE--FRIVQLCVNKPDVNLA-IRYACIV----PRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A-~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (651)
+...|.++++.-+|+.|...+.+.....-. ..++..| ...++--| ++.|-.+ .++..+| +.|++
T Consensus 125 mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~-Ns~~~~~~E~~~Fv~~~~~~E~S~~sW--------K~G~v 195 (625)
T KOG4422|consen 125 MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYY-NSSNVPFAEWEEFVGMRNFGEDSTSSW--------KSGAV 195 (625)
T ss_pred HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhh-cCCCCcchhHHHHhhcccccccccccc--------ccccH
Confidence 344799999999999999888654332222 2223222 33333222 2222222 1122222 33554
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (651)
.+ ++-+.. +.+..++..||.++++.-..+.|.++|++......+.+..+||.+|.+.+- ....+++.+|..
T Consensus 196 Ad---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~--~~~K~Lv~EMis 266 (625)
T KOG4422|consen 196 AD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY--SVGKKLVAEMIS 266 (625)
T ss_pred HH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh--hccHHHHHHHHH
Confidence 44 333322 246779999999999999999999999999998889999999999987431 112789999999
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHH----HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH-HHHHHHHHHH-
Q 006303 318 LGVMADMASYNILLKACCLAGNTVLA----QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLS- 391 (651)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~- 391 (651)
..+.||..|+|+++.+..+.|+++.| .+++.+|++++ +.|...+|..+|..+++.++..+ +.-++..+..
T Consensus 267 qkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiG----VePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 267 QKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIG----VEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred hhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhC----CCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999988765 45667777653 89999999999999999888644 3334444332
Q ss_pred ---CCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHhcCChhHHHHHHH
Q 006303 392 ---AGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAG----CEPNS---QCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 392 ---~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
..++ -|...|..-+..|.+..+.+.|.++..-+.... +.|+. .-|..+....|+....+.-...|+
T Consensus 343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~ 422 (625)
T KOG4422|consen 343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE 422 (625)
T ss_pred hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1222 255677888899999999999988877665432 23332 236667778888888898899998
Q ss_pred HhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHH
Q 006303 458 SWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKAL 535 (651)
Q Consensus 458 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~ 535 (651)
.|...- +-|+..+...++.+.. +.++-.-++
T Consensus 423 ~lVP~~-----------------------------------------------y~p~~~~m~~~lrA~~v~~~~e~ipRi 455 (625)
T KOG4422|consen 423 DLVPSA-----------------------------------------------YFPHSQTMIHLLRALDVANRLEVIPRI 455 (625)
T ss_pred Hhccce-----------------------------------------------ecCCchhHHHHHHHHhhcCcchhHHHH
Confidence 876443 2677777777777654 356667777
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcCC-C--------hH-----HHHHHH-------HHHHHCCCCCCHHHHHHHHHHHH
Q 006303 536 MNEMRTVGLSPNHISWTILIDACGGSG-N--------VE-----GALQIL-------KIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~li~~~~~~g-~--------~~-----~A~~~~-------~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
|.+++..|..-+...-.-++..+++.. . +. -|..++ .++.+ .+-.....+.....+.
T Consensus 456 w~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~~~~~t~l~~ia~Ll~ 533 (625)
T KOG4422|consen 456 WKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--QDWPATSLNCIAILLL 533 (625)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--ccCChhHHHHHHHHHH
Confidence 777777665544444444444444433 1 00 111111 22332 2345666788888899
Q ss_pred hcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 595 RSKRLKQAFSLFEEMKHYQ----IQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
+.|..++|.+++..+.+.+ ..|......-++....+..+...|..++++.
T Consensus 534 R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 534 RAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred HcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999996443 2344444556777778888888777766553
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.9e-11 Score=119.73 Aligned_cols=510 Identities=13% Similarity=0.073 Sum_probs=328.2
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
..+..+...|++++|..++..+++. .|. ...++..++..|-.+|+.+++...+--+-- +.|.+.
T Consensus 144 ~eAN~lfarg~~eeA~~i~~EvIkq--dp~------~~~ay~tL~~IyEqrGd~eK~l~~~llAAH--L~p~d~------ 207 (895)
T KOG2076|consen 144 GEANNLFARGDLEEAEEILMEVIKQ--DPR------NPIAYYTLGEIYEQRGDIEKALNFWLLAAH--LNPKDY------ 207 (895)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--Ccc------chhhHHHHHHHHHHcccHHHHHHHHHHHHh--cCCCCh------
Confidence 3344455569999999999999998 665 355667778889999999999887755544 556543
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCC-----ccHHH
Q 006303 156 KLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-----ILFCN 226 (651)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-----~~~~~ 226 (651)
..+........+.|++++|.-.|.+.++.. |.+....-.-...|.+.|+...|..-|.++ |+.+ ..-..
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~ 285 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRR 285 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHH
Confidence 223333334556899999999999999866 777777777788999999999998766553 5332 12223
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCC-CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH-----------
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLS-SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF----------- 294 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~----------- 294 (651)
.+..+...++-+.|.+.++.....+. .-+...++.++..|.+...++.+......+..+...+|..-|
T Consensus 286 ~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~ 365 (895)
T KOG2076|consen 286 VAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPN 365 (895)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhcccccc
Confidence 56777888888999999988876332 245667889999999999999999998888773333333222
Q ss_pred ----------------HHHHHhh-cCChHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 006303 295 ----------------NSLMNVN-AHDLKFTLEVYKNMQKLGVM--ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (651)
Q Consensus 295 ----------------~~ll~~~-~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (651)
...+... .+..+....+...+...+.. -+...|.-+.++|...|++.+|..+|..+....
T Consensus 366 ~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~- 444 (895)
T KOG2076|consen 366 ALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNRE- 444 (895)
T ss_pred ccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCc-
Confidence 1111111 13445555566666666533 356788889999999999999999999998632
Q ss_pred cCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH--------Hc
Q 006303 356 KGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML--------QA 427 (651)
Q Consensus 356 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--------~~ 427 (651)
.--+...|-.+..+|...|.+++|.+.|++.+... +-+...-..|-..+.+.|+.++|.+++..+. ..
T Consensus 445 ---~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~ 520 (895)
T KOG2076|consen 445 ---GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEAC 520 (895)
T ss_pred ---cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhc
Confidence 12347789999999999999999999999999763 2245566677788899999999999999854 22
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 428 GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 428 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
+..|.........+.+.+.|+.++-+..-..|.......... ....+..+......
T Consensus 521 a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~~~~~-----------f~~~~k~r~~~~~~------------- 576 (895)
T KOG2076|consen 521 AWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLKKRYI-----------FPRNKKKRRRAIAG------------- 576 (895)
T ss_pred cccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-----------cchHHHHHHHhhcc-------------
Confidence 345555556666777888898888666666665432211100 00000000000000
Q ss_pred ccccCCCHHHHHHHHHHHhh--c---HHHH---HHHHHHHHHcCCCCcH--HHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 508 RFSFKPTTTTYNILMKACCT--D---YYRV---KALMNEMRTVGLSPNH--ISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~--~---~~~a---~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
.+..........++.+..+ + .+.+ ...+.--...|+..+. ..+.-++..+++.+++++|+.+...+...
T Consensus 577 -~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~ 655 (895)
T KOG2076|consen 577 -TTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWFELFRELILSLAKLQRVQEALSVVFTALEA 655 (895)
T ss_pred -ccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 0001111122222222211 0 0000 0111112222333322 24566777888899999999998888763
Q ss_pred C--CCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCC--CCH-HHHHHHHHHHHhcCC
Q 006303 578 G--MSPDV---VAYTTAIKVCVRSKRLKQAFSLFEEMKHY-QIQ--PNL-VTYITLLRARSRYGS 633 (651)
Q Consensus 578 ~--~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~--p~~-~~~~~l~~~~~~~g~ 633 (651)
. ..++. ..=...+.+....+++..|.+++..|... +.. |.. ..|+..++.+.+.|+
T Consensus 656 ~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~l~n~~~s~~~~~~q 720 (895)
T KOG2076|consen 656 YIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLNLWNLDFSYFSKYGQ 720 (895)
T ss_pred hhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2 12222 12245667778888999999999988742 222 222 345545666666554
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.5e-10 Score=109.18 Aligned_cols=497 Identities=12% Similarity=0.040 Sum_probs=258.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
...++..-|.+ +..|...+.. ..+...-..++...++. -|++... -.+.......++|..+|.+
T Consensus 338 vA~Avr~~P~S-v~lW~kA~dL---E~~~~~K~RVlRKALe~--iP~sv~L----------WKaAVelE~~~darilL~r 401 (913)
T KOG0495|consen 338 VANAVRFLPTS-VRLWLKAADL---ESDTKNKKRVLRKALEH--IPRSVRL----------WKAAVELEEPEDARILLER 401 (913)
T ss_pred HHHHHHhCCCC-hhhhhhHHhh---hhHHHHHHHHHHHHHHh--CCchHHH----------HHHHHhccChHHHHHHHHH
Confidence 44455555555 4444333222 23333344555555555 4443221 1223344455556666666
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
..+. -|. .+++ +..+.+..-++.|..++.+..+. -|++...|..-.+.=-..|+.+...++.++.
T Consensus 402 Avec--cp~------s~dL----wlAlarLetYenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl 467 (913)
T KOG0495|consen 402 AVEC--CPQ------SMDL----WLALARLETYENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGL 467 (913)
T ss_pred HHHh--ccc------hHHH----HHHHHHHHHHHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6652 221 1111 22333345566666666666552 2555566655555555566666555554431
Q ss_pred ---CC-----CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 218 ---PR-----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 218 ---~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
.. +...|..=...|-+.|.+--+..+....+..|++- -..+|+.-.+.|.+.+.++-|..+|...++--.
T Consensus 468 ~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp 547 (913)
T KOG0495|consen 468 SELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFP 547 (913)
T ss_pred HHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhcc
Confidence 11 12334444555555566666666666665555442 234566666666666666666666665554311
Q ss_pred cccHHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 288 TLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 288 ~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
-+...|...... .-|..+....+|++....- +-....|......+-..|++..|..++.++.+. .+.+..+
T Consensus 548 -~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~-----~pnseei 620 (913)
T KOG0495|consen 548 -CKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA-----NPNSEEI 620 (913)
T ss_pred -chhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh-----CCCcHHH
Confidence 133334333332 1245555566666655531 222333434444555556666666666665542 1234455
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
|-.-+..-..+..++.|..+|.+.... .|+...|..-+....-.+..++|.+++++.++.- +.-...|-.+...+.+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-p~f~Kl~lmlGQi~e~ 697 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKSF-PDFHKLWLMLGQIEEQ 697 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-CchHHHHHHHhHHHHH
Confidence 666666666666666666666665543 3455555555555555566666666666655541 2222345555555666
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
.++.+.|.+.|..-... -|+..-+..++.-+
T Consensus 698 ~~~ie~aR~aY~~G~k~-------------------------------------------------cP~~ipLWllLakl 728 (913)
T KOG0495|consen 698 MENIEMAREAYLQGTKK-------------------------------------------------CPNSIPLWLLLAKL 728 (913)
T ss_pred HHHHHHHHHHHHhcccc-------------------------------------------------CCCCchHHHHHHHH
Confidence 66666666655542221 22222222222211
Q ss_pred h---hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----C--------------------
Q 006303 526 C---TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED----G-------------------- 578 (651)
Q Consensus 526 ~---~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~-------------------- 578 (651)
- +..-+|..+++.....+. -+...|-..|.+-.+.|+.+.|..++.+..+. |
T Consensus 729 eEk~~~~~rAR~ildrarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 729 EEKDGQLVRARSILDRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HHHhcchhhHHHHHHHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHH
Confidence 1 133344444444433321 13344444444444444444444444333321 0
Q ss_pred -----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 579 -----MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (651)
Q Consensus 579 -----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 646 (651)
..-|+...-.+...+....++++|.+.|.+..+.+ +-+..+|.-+.....++|.-++-++++..|..
T Consensus 808 DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~ 879 (913)
T KOG0495|consen 808 DALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET 879 (913)
T ss_pred HHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 23467777788888999999999999999998653 33457888899999999988877777766653
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.6e-11 Score=112.28 Aligned_cols=410 Identities=13% Similarity=0.107 Sum_probs=246.9
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
.....+.+.-.+.+.|.+++|+..|+.+... .|+ +-+-.+++..++.-|+.++..+.|.+|+.....|+..
T Consensus 275 rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn-------~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~ddd 345 (840)
T KOG2003|consen 275 RIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APN-------FIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDD 345 (840)
T ss_pred HHHHHhhcCeeEEecccchhhHhhHHHHHHh--Ccc-------HHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcc
Confidence 3445566667778889999999999988887 666 2222355556777888889999999998765555443
Q ss_pred c--------cchhhHHHHH-HHHHHhhcc---hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 150 F--------DGSGFKLLKN-ECQRLLDSG---EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 150 ~--------~~~~~~~l~~-~~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
- +..+++--++ -...-.... +.++++-.--++...-+.|+.......-+..+-.....+.|.
T Consensus 346 kyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~------ 419 (840)
T KOG2003|consen 346 KYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAI------ 419 (840)
T ss_pred cccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhh------
Confidence 1 1112211111 000111111 222333333333333232322211111111111111111111
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH-HHh-cCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV-CGI-CGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
..--+-..-|.++|+++.|++++.-..+.+-..-..+-+.|... |.. ..++.+|.+.-+..... |.+--.
T Consensus 420 ----dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~----dryn~~ 491 (840)
T KOG2003|consen 420 ----DLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI----DRYNAA 491 (840)
T ss_pred ----hhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc----cccCHH
Confidence 11112344577889999999888877664433222223333222 222 34577776666655432 222222
Q ss_pred HHHH----hh-cCChHHHHHHHHHHHHCCCCCCHHhHHHH---HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH
Q 006303 296 SLMN----VN-AHDLKFTLEVYKNMQKLGVMADMASYNIL---LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (651)
Q Consensus 296 ~ll~----~~-~~~~~~a~~~~~~m~~~~~~~~~~~~~~l---l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (651)
++.+ ++ .|+++.|.+.|++.... |..+-.+| .-.+-..|++++|.+.|-.+..+ +..+.....
T Consensus 492 a~~nkgn~~f~ngd~dka~~~ykeal~n----dasc~ealfniglt~e~~~~ldeald~f~klh~i-----l~nn~evl~ 562 (840)
T KOG2003|consen 492 ALTNKGNIAFANGDLDKAAEFYKEALNN----DASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-----LLNNAEVLV 562 (840)
T ss_pred HhhcCCceeeecCcHHHHHHHHHHHHcC----chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-----HHhhHHHHH
Confidence 2222 12 27888888888888764 33332233 23456778889998888877654 445677777
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.+.+.|-...+...|++++.+.... ++.|....+.|...|-+.|+..+|++.+-+--.- ++.+..+...|..-|....
T Consensus 563 qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtq 640 (840)
T KOG2003|consen 563 QIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQ 640 (840)
T ss_pred HHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhH
Confidence 8888888888888888888776654 4557778888888888888888888776554332 4667778888888888888
Q ss_pred ChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh
Q 006303 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 527 (651)
-+++++.+|++..- +.|+..-|..++..|.+
T Consensus 641 f~ekai~y~ekaal-------------------------------------------------iqp~~~kwqlmiasc~r 671 (840)
T KOG2003|consen 641 FSEKAINYFEKAAL-------------------------------------------------IQPNQSKWQLMIASCFR 671 (840)
T ss_pred HHHHHHHHHHHHHh-------------------------------------------------cCccHHHHHHHHHHHHH
Confidence 88888888886532 47888888888887763
Q ss_pred ---cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC
Q 006303 528 ---DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563 (651)
Q Consensus 528 ---~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 563 (651)
++.+|..++++..+. ++-|......|++.+...|-
T Consensus 672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence 678888888877664 44577777777777776663
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-10 Score=117.09 Aligned_cols=291 Identities=12% Similarity=0.117 Sum_probs=209.1
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.|+.++|..++.+++... |.....|..|+..|-+.|+.+++....-. -|.+...|..+.+...+.|.+..|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 499999999999999865 88899999999999999999999876433 377779999999999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc------CChHHHHHHHHHHHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------HDLKFTLEVYKNMQK 317 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~------~~~~~a~~~~~~m~~ 317 (651)
|.+.++... ++....-.-...|-+.|+...|.+.|.++.....+.|..-+..++.... ++.+.|.+.++....
T Consensus 230 y~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 999998543 3444555566778999999999999999988755444444445554322 455788888877765
Q ss_pred C-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh----------------------hc-CCccccHHHHHHHHHHH
Q 006303 318 L-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE----------------------AK-GVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 318 ~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------------------~~-~~~~~~~~~~~~l~~~~ 373 (651)
. +-..+...++.++..+.+...++.+........... .- ..+.++..+ -.++-++
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL 387 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL 387 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence 3 223456678888888888888888887776665410 00 001222222 1233344
Q ss_pred HcccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 374 ADAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.+.+..+....+...+.... +.-+...|..+..+|.+.|++..|+.+|..+......-+..+|-.+..+|...|.++.
T Consensus 388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~ 467 (895)
T KOG2076|consen 388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE 467 (895)
T ss_pred hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence 44444455555555555554 3334556777778888888888888888888776555556677778888888888888
Q ss_pred HHHHHHHhhhc
Q 006303 452 AFRLFRSWTLS 462 (651)
Q Consensus 452 a~~~~~~~~~~ 462 (651)
|.+.|+.....
T Consensus 468 A~e~y~kvl~~ 478 (895)
T KOG2076|consen 468 AIEFYEKVLIL 478 (895)
T ss_pred HHHHHHHHHhc
Confidence 88888777654
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2e-08 Score=98.06 Aligned_cols=402 Identities=11% Similarity=0.053 Sum_probs=275.6
Q ss_pred HHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC
Q 006303 173 MFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLS 252 (651)
Q Consensus 173 ~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 252 (651)
.=..++++.++.- |+++-.|- +-....+.+.|.-++.++...-....-|.-+|++..-|+.|.++++...+. +
T Consensus 364 ~K~RVlRKALe~i--P~sv~LWK----aAVelE~~~darilL~rAveccp~s~dLwlAlarLetYenAkkvLNkaRe~-i 436 (913)
T KOG0495|consen 364 NKKRVLRKALEHI--PRSVRLWK----AAVELEEPEDARILLERAVECCPQSMDLWLALARLETYENAKKVLNKAREI-I 436 (913)
T ss_pred HHHHHHHHHHHhC--CchHHHHH----HHHhccChHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHhh-C
Confidence 3344555555533 55544443 334456666676666665332233334556778888899999999998875 4
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHH----HhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCC--H
Q 006303 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMAD--M 324 (651)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~--~ 324 (651)
+.+..+|-+-...=-.+|+.+.+.+++.+- ...|+..+..-|-.-...+. |..-.+..+....+..|+.-. .
T Consensus 437 ptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~ 516 (913)
T KOG0495|consen 437 PTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRK 516 (913)
T ss_pred CCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhH
Confidence 456677777666667888888888877653 44577777777765555443 667777888888877776432 4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
.||+.-...|.+.+.++-|..+|....+. ++-+...|...+..=-..|..++...+|+++...- +-....|...
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-----fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-pkae~lwlM~ 590 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-----FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-PKAEILWLMY 590 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-----ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CcchhHHHHH
Confidence 68888888999999999999999988874 45667788888887788899999999999998773 3356667777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
...+-..|++..|..++....+.. +.+...|-.-+..-..+..+++|..+|.+....
T Consensus 591 ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~---------------------- 647 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI---------------------- 647 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc----------------------
Confidence 777888899999999999998875 346678888888888899999999999876542
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHH--HHHHHHhhcHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhcC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN--ILMKACCTDYYRVKALMNEMRTVGLSPNH-ISWTILIDACGGS 561 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ll~~~~~~~~~a~~~~~~~~~~~~~p~~-~~~~~li~~~~~~ 561 (651)
.|+...|. .-+.-|.++.++|.+++++..+. -|+. ..|..+...+-+.
T Consensus 648 ---------------------------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~ 698 (913)
T KOG0495|consen 648 ---------------------------SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQM 698 (913)
T ss_pred ---------------------------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHH
Confidence 44444443 23334456777777777777663 3443 3566666667677
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
++++.|...|..-.+. ++-.+..|-.+.+.--+.|.+-+|..++++..-.+ +-|...|...|+.=.|.|+.+.|+..+
T Consensus 699 ~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lm 776 (913)
T KOG0495|consen 699 ENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLM 776 (913)
T ss_pred HHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHH
Confidence 7777776666554442 22234455555555566667777777777766432 445666777777777777777666533
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.5e-11 Score=120.47 Aligned_cols=284 Identities=10% Similarity=-0.067 Sum_probs=209.9
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCC-ccHHHHHHHHhhcCCHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRAD-ILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~-~~~~~l~~~~~~~g~~~~a~~ 242 (651)
.|+++.|.+.+.+..+.. |.+...+.....+..+.|+++.|.+++... |.+. .+.......+...|+++.|++
T Consensus 97 ~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~ 174 (409)
T TIGR00540 97 EGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH 174 (409)
T ss_pred CCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence 699999999998877644 544555556677888999999999998874 4443 244446888899999999999
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC-----ChHHHHHHHHHHHH
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----DLKFTLEVYKNMQK 317 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-----~~~~a~~~~~~m~~ 317 (651)
.++.+.+..+ -+..++..+...+...|++++|.+.+..+.+.++.+.............+ ..+...+.+..+.+
T Consensus 175 ~l~~l~~~~P-~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~ 253 (409)
T TIGR00540 175 GVDKLLEMAP-RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWK 253 (409)
T ss_pred HHHHHHHhCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999998642 36678899999999999999999999999998765333221111122211 11222334444433
Q ss_pred CC---CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH---HHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 318 LG---VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT---YSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 318 ~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
.. .+.+...+..+...+...|+.++|.++++...+. .||... ...........++.+.+.+.++...+
T Consensus 254 ~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~------~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk 327 (409)
T TIGR00540 254 NQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK------LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAK 327 (409)
T ss_pred HCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh------CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHH
Confidence 32 1237888889999999999999999999999873 345442 12223333456788899999988887
Q ss_pred CCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 392 AGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 392 ~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.. +-|. .....+...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 328 ~~-p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 328 NV-DDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred hC-CCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 63 2244 566788999999999999999999644444578999899999999999999999999997643
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-10 Score=116.35 Aligned_cols=248 Identities=9% Similarity=0.052 Sum_probs=135.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYN--ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
|+++.+.+.+.++.+. .|+..... .....+...|+++.|...++.+.+. .+-+......+...|.+.|+++
T Consensus 132 g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-----~P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 132 GDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEV-----APRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHHhHH
Confidence 4555555555555442 23332222 2245566667777777776666652 1334455666666667777777
Q ss_pred HHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 381 MALKVKEDMLSAGVTPNT-------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
+|.+++..+.+.+..++. .+|..++.......+.+...++++.+.+. .+.++.....+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 777777666665433211 12222333333333444445555544322 2345566666666777777777777
Q ss_pred HHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHH
Q 006303 454 RLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVK 533 (651)
Q Consensus 454 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~ 533 (651)
+++++..+. .|+............++.+++.
T Consensus 284 ~~L~~~l~~-------------------------------------------------~~~~~l~~l~~~l~~~~~~~al 314 (398)
T PRK10747 284 QIILDGLKR-------------------------------------------------QYDERLVLLIPRLKTNNPEQLE 314 (398)
T ss_pred HHHHHHHhc-------------------------------------------------CCCHHHHHHHhhccCCChHHHH
Confidence 776655432 2332211111111113455555
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 534 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+..+...+.. +-|...+..+...|.+.|++++|.+.|+.+.+. .|+...|..+...+.+.|+.++|.+++++-.
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 5555555432 224455666677777777777777777777763 5677776677777777777777777776654
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.7e-12 Score=124.18 Aligned_cols=259 Identities=12% Similarity=0.115 Sum_probs=175.7
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcC-CCccccchHHHHHHHHhcCCCh-HHHHHHhhhCCCCCccHHHHHHHHhhcC
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVKELDEEFRIVQLCVNKPDV-NLAIRYACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
+.++..+|...+++++|.++|+.+.... ...++.+.++..+..+-+.-.. -.|..+.+..|..+++|..+..+|.-++
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQk 435 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQK 435 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhh
Confidence 3444444555555555555555554322 2233444444444333221111 1334444555677788888888888888
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh---h--cCChHHHH
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV---N--AHDLKFTL 309 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~--~~~~~~a~ 309 (651)
+.+.|++.|++..+ +.| ..++|+.+..-+.....+|.|...|+..+.. |...||+.--. | .++++.|+
T Consensus 436 dh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~~rhYnAwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 436 DHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV----DPRHYNAWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC----CchhhHHHHhhhhheeccchhhHHH
Confidence 88888888888887 455 5778888888888888888888888876643 66666655442 2 25777777
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
-.|+...+-+ +.+.+....+...+.+.|+.++|+++|+++..+. +.|+..--..+..+...+++++|+..++++
T Consensus 510 ~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-----~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 510 FHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-----PKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-----CCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 7777777654 3366677778888888899999999999888752 344555555677778888999999999998
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006303 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (651)
Q Consensus 390 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 429 (651)
++. ++-+...|..+...|.+.|+.+.|+.-|..+.+.+.
T Consensus 584 k~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 584 KEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 876 233556777888888899999999888888876643
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.9e-09 Score=98.24 Aligned_cols=414 Identities=11% Similarity=0.086 Sum_probs=298.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSA 240 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a 240 (651)
-.+.+++..|.+++++.+... ..+...|...+..=.+......|..++++ +|+-+..|.-.+.+=...|++..|
T Consensus 83 Eesq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~ga 160 (677)
T KOG1915|consen 83 EESQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGA 160 (677)
T ss_pred HHhHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHH
Confidence 344688899999999988744 56677788888888888889999888776 477778888877777888999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHHHHHHHHHC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~ 318 (651)
.++|+.-.+ ..|+..+|++.++.=.+...++.|..+|+...-. .|++..|--.... ..|....+..+|....+.
T Consensus 161 RqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~aR~VyerAie~ 236 (677)
T KOG1915|consen 161 RQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVALARSVYERAIEF 236 (677)
T ss_pred HHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 999998777 6799999999999999999999999999998765 4788888776664 457888899999887663
Q ss_pred -CC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCH---HHHHH-----HH
Q 006303 319 -GV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWW---QMALK-----VK 386 (651)
Q Consensus 319 -~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~---~~a~~-----~~ 386 (651)
|- ..+...+.+....=.++..++.|.-+|+-.... ++.+ ...|..+...=-+-|+. ++++- -+
T Consensus 237 ~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-----~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qY 311 (677)
T KOG1915|consen 237 LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-----IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQY 311 (677)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHH
Confidence 21 011223333333333566788888888887763 2223 33444444433344544 33332 23
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH-----HHH---HhcCChhHHHHHH
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ--CCNILL-----QAC---VEACQFDRAFRLF 456 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~ll-----~~~---~~~g~~~~a~~~~ 456 (651)
+.++..+ +-|-.+|-..++.-...|+.+...++|++.+..- +|-.. .|...| -+| ....+.+.+.++|
T Consensus 312 E~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanv-pp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vy 389 (677)
T KOG1915|consen 312 EKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANV-PPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVY 389 (677)
T ss_pred HHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 4444443 4478888889998889999999999999998763 44221 122222 222 2467888888888
Q ss_pred HHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh------hcHH
Q 006303 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC------TDYY 530 (651)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~------~~~~ 530 (651)
+..++. ++...+||.-+--.|+ .+..
T Consensus 390 q~~l~l------------------------------------------------IPHkkFtFaKiWlmyA~feIRq~~l~ 421 (677)
T KOG1915|consen 390 QACLDL------------------------------------------------IPHKKFTFAKIWLMYAQFEIRQLNLT 421 (677)
T ss_pred HHHHhh------------------------------------------------cCcccchHHHHHHHHHHHHHHHcccH
Confidence 877652 2445566665555544 2677
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.|.+++..++ |..|...+|-..|..-.+.+++|.+.+++++.++-+. -|..+|......-...|+.+.|..+|+-.+
T Consensus 422 ~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi 498 (677)
T KOG1915|consen 422 GARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAI 498 (677)
T ss_pred HHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHh
Confidence 8888888765 4678889999999988899999999999999998542 267888888887788899999999999888
Q ss_pred HCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 611 HYQ-IQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 611 ~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+.. +......|.+.|.-=...|.++.|+.+++
T Consensus 499 ~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYe 531 (677)
T KOG1915|consen 499 SQPALDMPELLWKAYIDFEIEEGEFEKARALYE 531 (677)
T ss_pred cCcccccHHHHHHHhhhhhhhcchHHHHHHHHH
Confidence 543 33344667777777778888888877443
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.53 E-value=6.4e-12 Score=122.57 Aligned_cols=281 Identities=12% Similarity=0.107 Sum_probs=197.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHHhhcCChHH---HH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKF---TL 309 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~---a~ 309 (651)
=+..+|+..|..+.++ +.-..++...+..+|...+++++|.++|+.+.+...- -+...|.+.|.-....++. |.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq 411 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQ 411 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHH
Confidence 3567899999886654 2234577888899999999999999999999876321 3567788877765543332 22
Q ss_pred HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 310 EVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 310 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
.+.+.. +-.+.+|.++.++|.-.++.+.|++.|++..+ +.| ...+|+.+..=+.....+|.|...|+.
T Consensus 412 ~Li~~~-----~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ------ldp~faYayTLlGhE~~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 412 DLIDTD-----PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ------LDPRFAYAYTLLGHESIATEEFDKAMKSFRK 480 (638)
T ss_pred HHHhhC-----CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc------cCCccchhhhhcCChhhhhHHHHhHHHHHHh
Confidence 222222 34678999999999999999999999999887 445 677888888888889999999999998
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccc
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 468 (651)
.+.... .+-..|.-+...|.+.++++.|+-.|+++.+-+ +.+.+....+...+.+.|+.++|++++++....+..
T Consensus 481 Al~~~~-rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k--- 555 (638)
T KOG1126|consen 481 ALGVDP-RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK--- 555 (638)
T ss_pred hhcCCc-hhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC---
Confidence 876532 244566677888999999999999999998765 445667777888888899999999999887643321
Q ss_pred ccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-c
Q 006303 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-N 547 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~ 547 (651)
.|-.....+.+.-...++++|++.++++++. .| +
T Consensus 556 -------------------------------------------n~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~e 590 (638)
T KOG1126|consen 556 -------------------------------------------NPLCKYHRASILFSLGRYVEALQELEELKEL--VPQE 590 (638)
T ss_pred -------------------------------------------CchhHHHHHHHHHhhcchHHHHHHHHHHHHh--Ccch
Confidence 2222223333333334566666666666652 34 3
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
..+|-.+...|-+.|+.+.|+.-|.-+.+.
T Consensus 591 s~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 591 SSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 344555556666666666666666666553
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.2e-11 Score=118.27 Aligned_cols=224 Identities=9% Similarity=-0.009 Sum_probs=134.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS-SLINAC 408 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~ll~~~ 408 (651)
....+...|+++.|...++.+.+. .+-+...+..+...+...|++++|.+.+..+.+.++. +...+. .-..++
T Consensus 159 ~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~ 232 (409)
T TIGR00540 159 RTRILLAQNELHAARHGVDKLLEM-----APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAE 232 (409)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHH
Confidence 355566667777777777766652 1334455666667777777777777777777666543 222221 111111
Q ss_pred ---HhcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 409 ---ANAGLVEQAMHLFEEMLQAGC---EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 409 ---~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
...+..+.+.+.+..+.+... +.++..+..+...+...|+.++|.+++++..+..
T Consensus 233 ~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~------------------- 293 (409)
T TIGR00540 233 IGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL------------------- 293 (409)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-------------------
Confidence 222223333334444444321 1366677777777777777777777777766542
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHH-----HHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-cH--HHHHHH
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-----TYNILMKACCTDYYRVKALMNEMRTVGLSP-NH--ISWTIL 554 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~~--~~~~~l 554 (651)
||.. .+......-.++.+.+.+.++...+. .| |+ ....++
T Consensus 294 ------------------------------pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sL 341 (409)
T TIGR00540 294 ------------------------------GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRAL 341 (409)
T ss_pred ------------------------------CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHH
Confidence 2221 11111111113455666666666553 23 33 566788
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+.|.+.|++++|.+.|+........|+...+.++...+.+.|+.++|.++|++..
T Consensus 342 g~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 342 GQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 88888999999999999854443357888888888899999999999999888764
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.6e-13 Score=130.48 Aligned_cols=255 Identities=17% Similarity=0.124 Sum_probs=100.9
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++++|++++++......+|.+...|..++..+...++ ++.|++.+
T Consensus 18 ~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~------------------------------~~~A~~ay 67 (280)
T PF13429_consen 18 LYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGD------------------------------YDEAIEAY 67 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccc------------------------------cccccccc
Confidence 344688888888886544333234454545444444444444 44444444
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCC-CC
Q 006303 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLG-VM 321 (651)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~-~~ 321 (651)
+++...+.. +...+..++.. ...+++++|.++++...+.. ++...+...+..+ .++++.+..+++.+.... .+
T Consensus 68 ~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~ 143 (280)
T PF13429_consen 68 EKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAP 143 (280)
T ss_dssp ------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---
T ss_pred ccccccccc-ccccccccccc-cccccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCC
Confidence 444443221 23334444443 34445555554444433321 2222233333321 144455555555443321 24
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.+...|..+...+.+.|+.++|.+.|++..+. .|.|....+.++..+...|+.+++..+++...... +.|...+
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~ 217 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLW 217 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHC
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHH
Confidence 57778888889999999999999999999884 23357788889999999999999888888877653 4456677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
..+..++...|+.++|+.+|++..+.. +.|+.+...+.+++...|+.++|.++.++..
T Consensus 218 ~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 218 DALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred HHHHHHhcccccccccccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 888999999999999999999988864 5578888889999999999999999887654
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-09 Score=102.26 Aligned_cols=428 Identities=12% Similarity=0.048 Sum_probs=250.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCC-hhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGN-VSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...+...+.-|-++|++++|+..|.+.+..... |- .+.+....|...|+|+++++---+.++ +.|+
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi---------FYsNraAcY~~lgd~~~Vied~TkALE--l~P~-- 181 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI---------FYSNRAACYESLGDWEKVIEDCTKALE--LNPD-- 181 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch---------hhhhHHHHHHHHhhHHHHHHHHHHHhh--cCcH--
Confidence 345566677888899999999999999998544 32 235556668999999999999988887 5563
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh-CCCCCccHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI-VPRADILFCNFV 228 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~~~~~~~l~ 228 (651)
-...|.+-...+-..|+.++|+.=..-+.-.+... +.. ...++.-..+.--...+.+-+.. -++ .....+.+
T Consensus 182 ----Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~-n~s-~~~~~eR~Lkk~a~~ka~e~~k~nr~p-~lPS~~fi 254 (606)
T KOG0547|consen 182 ----YVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQ-NAS-IEPMAERVLKKQAMKKAKEKLKENRPP-VLPSATFI 254 (606)
T ss_pred ----HHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcc-cch-hHHHHHHHHHHHHHHHHHHhhcccCCC-CCCcHHHH
Confidence 23445555556666788887765333222111110 000 01111111111111122222221 111 11122223
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHH----Hhc-CCHHHHHHHHHHHHhCC-Ccc-----c-------
Q 006303 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVC----GIC-GDYMKSRAIYEDLRSQN-VTL-----N------- 290 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~-g~~~~a~~~~~~~~~~g-~~~-----~------- 290 (651)
..|...=..+ .......+.......+...+ ... ..+..|.+.+.+-.... ..+ |
T Consensus 255 ~syf~sF~~~--------~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A 326 (606)
T KOG0547|consen 255 ASYFGSFHAD--------PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMA 326 (606)
T ss_pred HHHHhhcccc--------ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHH
Confidence 3332210000 00000000011111111111 110 12333333333211100 000 1
Q ss_pred -HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHH
Q 006303 291 -IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 291 -~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (651)
...+........|+.-.+..-|+..+.....+ ...|..+..+|....+.++.++.|....++ -+-+..+|..-
T Consensus 327 ~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l-----dp~n~dvYyHR 400 (606)
T KOG0547|consen 327 EALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDL-----DPENPDVYYHR 400 (606)
T ss_pred HHHHHhhhhhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhc-----CCCCCchhHhH
Confidence 11122222235588889999999998865332 233778888999999999999999999885 24566788888
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
...+.-.+++++|..=|++.++.... +...|--+.-+..+.+++++++..|++.++. ++..+.+|+.....+...+++
T Consensus 401 gQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 401 GQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhH
Confidence 88888899999999999999987533 6667777777778899999999999999887 567788999999999999999
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH-HHHHhhc
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL-MKACCTD 528 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~ 528 (651)
++|.+.|+........... .-+.+.+.+--.+ +--+-++
T Consensus 479 d~A~k~YD~ai~LE~~~~~----------------------------------------~~v~~~plV~Ka~l~~qwk~d 518 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHL----------------------------------------IIVNAAPLVHKALLVLQWKED 518 (606)
T ss_pred HHHHHHHHHHHhhcccccc----------------------------------------ccccchhhhhhhHhhhchhhh
Confidence 9999999987654221000 0001111111111 1113357
Q ss_pred HHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+.+|..++.+..+. .| ....|..|...-.+.|++++|+++|++...
T Consensus 519 ~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 519 INQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777777763 33 334677777777777777777777777654
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.9e-10 Score=111.59 Aligned_cols=285 Identities=11% Similarity=0.040 Sum_probs=206.9
Q ss_pred HHHHhhcCChHHHHHHHHHHHHCCCCCCHHh-HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH--HHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQKLGVMADMAS-YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS--TIVKV 372 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~ 372 (651)
.++....|+++.|.+.+....+.. +++.. |.....+..+.|+++.|.+.+.++.+ ..|+..... .....
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~------~~~~~~~~~~l~~a~l 162 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAE------LADNDQLPVEITRVRI 162 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh------cCCcchHHHHHHHHHH
Confidence 344445577777777776655532 22333 33334555789999999999999987 456654433 33678
Q ss_pred HHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHh
Q 006303 373 FADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACVE 445 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~~ 445 (651)
+...|+++.|...++++.+... -+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.....
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P-~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAP-RHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999998763 377888899999999999999999999999987543221 22233333334
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
..+.+...++++.+... .+.+......+...+
T Consensus 242 ~~~~~~l~~~w~~lp~~------------------------------------------------~~~~~~~~~~~A~~l 273 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRK------------------------------------------------TRHQVALQVAMAEHL 273 (398)
T ss_pred hcCHHHHHHHHHhCCHH------------------------------------------------HhCCHHHHHHHHHHH
Confidence 44455555555554322 133455555566665
Q ss_pred h--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006303 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 526 ~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 603 (651)
. ++.++|..++.+..+. .|+.... ++.+....++.+++.+..+...+.. +-|...+..+...|.+.|++++|.
T Consensus 274 ~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 4 5899999999998884 4555332 3444456699999999999998863 235667889999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
+.|+.+.+. .|+..++..+..++.+.|+.++|.++++.=
T Consensus 349 ~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 349 LAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999964 799999999999999999999998866543
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.50 E-value=5.3e-10 Score=105.04 Aligned_cols=407 Identities=13% Similarity=0.062 Sum_probs=253.6
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCcc-ccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPL-ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
+.+..+.++|++++|+..|.+.++ ..|+ +..| .+....|...|+|++.++-..+.++.. |+...++..
T Consensus 120 ~~GN~~f~~kkY~eAIkyY~~AI~--l~p~epiFY-------sNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~R 188 (606)
T KOG0547|consen 120 TKGNKFFRNKKYDEAIKYYTQAIE--LCPDEPIFY-------SNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLR 188 (606)
T ss_pred hhhhhhhhcccHHHHHHHHHHHHh--cCCCCchhh-------hhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHH
Confidence 345558899999999999999998 5666 3322 222335556899999999999988855 888888888
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHH--------HHHh-cCC--CCcHHhHHHHHHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYD--------ASKK-HLS--SPNMYICRTIIDV 265 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~--------~~~~-~~~--~~~~~~~~~l~~~ 265 (651)
-.+++-..|++.+|+.- .+...+...+....-...+.+++. +-.. .+. -|+....+.....
T Consensus 189 RA~A~E~lg~~~eal~D--------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~s 260 (606)
T KOG0547|consen 189 RASAHEQLGKFDEALFD--------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGS 260 (606)
T ss_pred HHHHHHhhccHHHHHHh--------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhh
Confidence 88888889999888742 222233333333322223333332 2112 221 1333333333333
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC---ChHHHHHHHHHHHHC---CCCC---C------HHhHHHH
Q 006303 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKL---GVMA---D------MASYNIL 330 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~---~~~~---~------~~~~~~l 330 (651)
+...-. ..+...+.+.|...-..+=..+.+ .+..+...+.+-... .... | ..+....
T Consensus 261 F~~~~~--------~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~ 332 (606)
T KOG0547|consen 261 FHADPK--------PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLR 332 (606)
T ss_pred cccccc--------ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHh
Confidence 221100 000000001111111111111111 222232222221110 0001 1 1122222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
...+.-.|+...|.+-|+....+. +.+...|-.+..+|....+-++.+..|.+..+.+.. +..+|..-.....-
T Consensus 333 gtF~fL~g~~~~a~~d~~~~I~l~-----~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~fl 406 (606)
T KOG0547|consen 333 GTFHFLKGDSLGAQEDFDAAIKLD-----PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFL 406 (606)
T ss_pred hhhhhhcCCchhhhhhHHHHHhcC-----cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHH
Confidence 223345689999999999998742 223334888889999999999999999999987644 67778888888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccc
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSI 490 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 490 (651)
.+++++|..=|++.+... +-+...|..+..+..+.+.+++++..|++....
T Consensus 407 L~q~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk---------------------------- 457 (606)
T KOG0547|consen 407 LQQYEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK---------------------------- 457 (606)
T ss_pred HHHHHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh----------------------------
Confidence 889999999999998764 334556666666777889999999999987754
Q ss_pred cCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCc-------HH--HHHHHHHHHh
Q 006303 491 TNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPN-------HI--SWTILIDACG 559 (651)
Q Consensus 491 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~-------~~--~~~~li~~~~ 559 (651)
++.-+..|+.....+. ++++.|.+.|+..++. .|+ .. +--+++..-.
T Consensus 458 --------------------FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E~~~~~~~v~~~plV~Ka~l~~qw 515 (606)
T KOG0547|consen 458 --------------------FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--EPREHLIIVNAAPLVHKALLVLQW 515 (606)
T ss_pred --------------------CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--ccccccccccchhhhhhhHhhhch
Confidence 2333556666666665 5899999999998874 333 22 2222222222
Q ss_pred cCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 560 GSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 560 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+++..|..++.+.++.+.+ ....|..|...-.++|+.++|+++|++-.
T Consensus 516 -k~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 516 -KEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred -hhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 28899999999999985322 34578899999999999999999999875
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-09 Score=101.18 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=207.2
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCcc--HHHHHHHHhhcCCHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~ 242 (651)
+.+.|....|++.|...+... |-...+|..|...+. +.+.+..+-..+|.+.-. -.-+..++......++++.
T Consensus 174 ~k~~~~~s~A~~sfv~~v~~~--P~~W~AWleL~~lit---~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~ 248 (559)
T KOG1155|consen 174 LKELGLLSLAIDSFVEVVNRY--PWFWSAWLELSELIT---DIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQ 248 (559)
T ss_pred HHhhchHHHHHHHHHHHHhcC--CcchHHHHHHHHhhc---hHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 345788889999988877633 667677776665542 233333333334433211 1225566777778899999
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--ccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
-.+.....|.+-+...-+....+.-...|+++|+.+|+++.+..+- -|..+|..++.+....-. +..+.+-...=-
T Consensus 249 k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~sk--Ls~LA~~v~~id 326 (559)
T KOG1155|consen 249 KKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSK--LSYLAQNVSNID 326 (559)
T ss_pred HHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHH--HHHHHHHHHHhc
Confidence 9999888888655555555555566778999999999999887432 367788887776553222 222222111101
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+-.+.|...+.+-|.-.++.++|...|+...++. +.....|+.|..-|...++...|...++..++.. +.|-..
T Consensus 327 KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-----p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRA 400 (559)
T KOG1155|consen 327 KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-----PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRA 400 (559)
T ss_pred cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-----cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHH
Confidence 2356677888888888899999999999998852 3346689999999999999999999999999875 458899
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
|..|.++|.-.+...-|+-+|++..+.. +.|...|.+|.++|.+.++.++|++.|......
T Consensus 401 WYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~ 461 (559)
T KOG1155|consen 401 WYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILL 461 (559)
T ss_pred HhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhc
Confidence 9999999999999999999999998875 567889999999999999999999999876543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3e-09 Score=99.50 Aligned_cols=351 Identities=13% Similarity=0.103 Sum_probs=233.3
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH-
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN- 299 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~- 299 (651)
...+......+-+.|....|+..|-..... .| ..|.+-+....-..+.+.+..+...+ ..|.......+.
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~--~P--~~W~AWleL~~lit~~e~~~~l~~~l-----~~~~h~M~~~F~~ 234 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNR--YP--WFWSAWLELSELITDIEILSILVVGL-----PSDMHWMKKFFLK 234 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhc--CC--cchHHHHHHHHhhchHHHHHHHHhcC-----cccchHHHHHHHH
Confidence 344444556667778888898888887652 22 33443333332233333333222222 112222222222
Q ss_pred -hhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc
Q 006303 300 -VNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 300 -~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (651)
++. +..+++.+-.+.+...|.+.+...-+....+.....|+++|+.+|+++.+.. .- ---|..+|..++-.--..
T Consensus 235 ~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knD-PY-Rl~dmdlySN~LYv~~~~ 312 (559)
T KOG1155|consen 235 KAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKND-PY-RLDDMDLYSNVLYVKNDK 312 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CC-cchhHHHHhHHHHHHhhh
Confidence 222 3677888888888888876666655555666677889999999999998731 11 112456676666433222
Q ss_pred cCHH-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 377 KWWQ-MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 377 ~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
.++. -|..+++ -. +--..|...+.+.|+-.++.++|..+|++..+.+ +.....|+.+..-|...++...|++-
T Consensus 313 skLs~LA~~v~~---id--KyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 313 SKLSYLAQNVSN---ID--KYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred HHHHHHHHHHHH---hc--cCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 2211 1112211 11 2234567778888888899999999999999875 44556788888889999999999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVK 533 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~ 533 (651)
|+...+-+ +.|-..|-.|-.+|. +-..-|+
T Consensus 387 YRrAvdi~------------------------------------------------p~DyRAWYGLGQaYeim~Mh~YaL 418 (559)
T KOG1155|consen 387 YRRAVDIN------------------------------------------------PRDYRAWYGLGQAYEIMKMHFYAL 418 (559)
T ss_pred HHHHHhcC------------------------------------------------chhHHHHhhhhHHHHHhcchHHHH
Confidence 98876532 457778888888886 4567788
Q ss_pred HHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006303 534 ALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH- 611 (651)
Q Consensus 534 ~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~- 611 (651)
-.|++.... +| |...|.+|.++|.+.++.++|++.|.+....| ..+...+..+.+.|-+.++.++|.++|++-++
T Consensus 419 yYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eAa~~yek~v~~ 495 (559)
T KOG1155|consen 419 YYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEAAQYYEKYVEV 495 (559)
T ss_pred HHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 888888874 45 78899999999999999999999999998865 33668899999999999999999999987764
Q ss_pred ---CCCCCC--HHHHHHHHHHHHhcCCHHHHHH
Q 006303 612 ---YQIQPN--LVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 612 ---~g~~p~--~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
.|..-+ ...-..|..-+.+.+++++|..
T Consensus 496 ~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~ 528 (559)
T KOG1155|consen 496 SELEGEIDDETIKARLFLAEYFKKMKDFDEASY 528 (559)
T ss_pred HHhhcccchHHHHHHHHHHHHHHhhcchHHHHH
Confidence 343322 2223335556777888877765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.9e-10 Score=102.29 Aligned_cols=283 Identities=11% Similarity=0.071 Sum_probs=215.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC--------ccHHHHHHHHhhcCCHHHH
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD--------ILFCNFVREFGKKRDLVSA 240 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~l~~~~~~~g~~~~a 240 (651)
.+.++|+++|-+|.+.. |...++...+++.|-+.|..+.|++++..+..++ .+...|..-|...|-++.|
T Consensus 49 ~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA 126 (389)
T COG2956 49 NQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA 126 (389)
T ss_pred cCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence 88899999999999844 7778889999999999999999999998874433 3344578888999999999
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHHhh--cCChHHHHHHHHH
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVN--AHDLKFTLEVYKN 314 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~--~~~~~~a~~~~~~ 314 (651)
..+|..+.+.+. --..+...|+..|-...+|++|+++-+++.+.+.++.. ..|.-+.... ..+.+.|..++.+
T Consensus 127 E~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k 205 (389)
T COG2956 127 EDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK 205 (389)
T ss_pred HHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 999999887432 23567889999999999999999999999887655442 2233333322 2588999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..+.+ +..+..-..+.+.....|+++.|.+.++.+.+. .|+ ..+...|..+|...|+.++....+..+.+.
T Consensus 206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ------n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQ------NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHh------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 98764 224445556778899999999999999999872 233 346788999999999999999999999886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCChhHHHHHHHHhhhcccc
Q 006303 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE---ACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~ 465 (651)
.. ....-..+-.......-.+.|..++.+-... +|+...+..+|+.-.. -|.+.+...+++.|....+.
T Consensus 279 ~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~ 350 (389)
T COG2956 279 NT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR 350 (389)
T ss_pred cC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence 43 3333344444444445567777776666655 7999999999986543 34567777788888765543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.8e-13 Score=126.60 Aligned_cols=227 Identities=15% Similarity=0.162 Sum_probs=66.6
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcC-CCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hcC
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHL-SSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAH 303 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~ 303 (651)
.+...+.+.|++++|+++++...... ...+...|..+...+...++++.|++.++++...+.. +...+..++.. ..+
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l~~~~ 91 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQLLQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccccc
Confidence 45677778888888888886554433 2235556666667777788888888888888766433 33334444433 235
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++++|.+++....+. .+++..+..++..+...++++++.++++.+... ...+.+...|..+...+.+.|+.++|+
T Consensus 92 ~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~a~~~~~~G~~~~A~ 166 (280)
T PF13429_consen 92 DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEEL---PAAPDSARFWLALAEIYEQLGDPDKAL 166 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH----T---T-HHHHHHHHHHHHHCCHHHHHH
T ss_pred ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhc---cCCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 666666665554433 234455555666666666666666666665531 112345555666666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+++++.++..+ -|......++..+...|+.+++.++++...+.. +.++..+..+..+|...|+.++|+..|++..
T Consensus 167 ~~~~~al~~~P-~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 167 RDYRKALELDP-DDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHH-T-T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCC-CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccc
Confidence 66666665421 135555566666666666666666666555543 3334455556666666666666666665543
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=2.4e-09 Score=95.53 Aligned_cols=286 Identities=13% Similarity=0.111 Sum_probs=198.2
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH------HHHHHHHHHHc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF------TYSTIVKVFAD 375 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~~~~ 375 (651)
+++.++|.+.|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++.+.+.. .||.. ..-.|..-|..
T Consensus 48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-------spdlT~~qr~lAl~qL~~Dym~ 119 (389)
T COG2956 48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-------SPDLTFEQRLLALQQLGRDYMA 119 (389)
T ss_pred hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-------CCCCchHHHHHHHHHHHHHHHH
Confidence 356677777777776632 22344566778888888889999888888875 34432 34456777888
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCChhH
Q 006303 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ----CCNILLQACVEACQFDR 451 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~ll~~~~~~g~~~~ 451 (651)
.|-++.|+.+|..+.+.|. --......|+..|....++++|+++-+++.+.+-.+... .|.-+...+....+.+.
T Consensus 120 aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~ 198 (389)
T COG2956 120 AGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDR 198 (389)
T ss_pred hhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHH
Confidence 8888999999888887542 245567778888888888999988888888765443322 34555555666778888
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH---hhc
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTD 528 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~ 528 (651)
|..++.+..+. .|+.+--++++.-. -++
T Consensus 199 A~~~l~kAlqa-------------------------------------------------~~~cvRAsi~lG~v~~~~g~ 229 (389)
T COG2956 199 ARELLKKALQA-------------------------------------------------DKKCVRASIILGRVELAKGD 229 (389)
T ss_pred HHHHHHHHHhh-------------------------------------------------CccceehhhhhhHHHHhccc
Confidence 88888876654 33333333333221 247
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEE 608 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 608 (651)
++.|.+.++...+.+..--..+...|..+|.+.|+.++...++.++.+... +...-..+-..-....-.+.|..++.+
T Consensus 230 y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~ 307 (389)
T COG2956 230 YQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTR 307 (389)
T ss_pred hHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHH
Confidence 888888888888876555677889999999999999999999999988533 333334444433344445666666655
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 609 MKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 609 m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
-... +|+...+..++..-..-+....+++-+-++++|+.
T Consensus 308 Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg 346 (389)
T COG2956 308 QLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG 346 (389)
T ss_pred HHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence 5533 69999999999987665554457888888998875
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.8e-07 Score=91.37 Aligned_cols=505 Identities=13% Similarity=0.130 Sum_probs=296.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+..-++.+..+|+...-...|++.++. -|-.--.. -+..+ +.-.-..|-++.++.+|++-+. +.|..
T Consensus 102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALra--LpvtqH~r-IW~ly---l~Fv~~~~lPets~rvyrRYLk--~~P~~-- 171 (835)
T KOG2047|consen 102 PRIWLDYLQFLIKQGLITRTRRTFDRALRA--LPVTQHDR-IWDLY---LKFVESHGLPETSIRVYRRYLK--VAPEA-- 171 (835)
T ss_pred CHHHHHHHHHHHhcchHHHHHHHHHHHHHh--CchHhhcc-chHHH---HHHHHhCCChHHHHHHHHHHHh--cCHHH--
Confidence 667888888899999999999999999887 33210000 01111 2223456777899999999987 56643
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC-----ccccchHHHHHHHHhcCCChHHHHHH-------hhhCC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-----VKELDEEFRIVQLCVNKPDVNLAIRY-------ACIVP 218 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~-------~~~~~ 218 (651)
....+..|. ..+++++|-+.+..++..... +.+...|..+....++..+.-.-..+ ..+.+
T Consensus 172 ~eeyie~L~-------~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rft 244 (835)
T KOG2047|consen 172 REEYIEYLA-------KSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFT 244 (835)
T ss_pred HHHHHHHHH-------hccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCc
Confidence 122333333 389999999999887643211 44556677777766654443322222 11122
Q ss_pred C-CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc----------------C------CHHHH
Q 006303 219 R-ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC----------------G------DYMKS 275 (651)
Q Consensus 219 ~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g------~~~~a 275 (651)
+ -...|++|.+.|.+.|+++.|..+|++..+.- ....-|..+.+.|+.. | +++-.
T Consensus 245 Dq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~ 322 (835)
T KOG2047|consen 245 DQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELH 322 (835)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHH
Confidence 2 23789999999999999999999999988742 2333344444444321 1 12233
Q ss_pred HHHHHHHHhCCC-----------cccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCC------HHhHHHHHHHHHhcC
Q 006303 276 RAIYEDLRSQNV-----------TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD------MASYNILLKACCLAG 338 (651)
Q Consensus 276 ~~~~~~~~~~g~-----------~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~------~~~~~~ll~~~~~~g 338 (651)
..-|+.+...+. .-++..|..-...+.++..+-...|.+.... +.|. ...|..+.+.|-..|
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~ 401 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNG 401 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcC
Confidence 444444443321 1234455555555666777777788777653 1221 346778888999999
Q ss_pred CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-----------------CCHHHH
Q 006303 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-----------------PNTITW 401 (651)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-----------------~~~~~~ 401 (651)
+++.|..+|++..+..-.+ +..=..+|......=.++.+++.|+.+++......-. .+...|
T Consensus 402 ~l~~aRvifeka~~V~y~~-v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiW 480 (835)
T KOG2047|consen 402 DLDDARVIFEKATKVPYKT-VEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIW 480 (835)
T ss_pred cHHHHHHHHHHhhcCCccc-hHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHH
Confidence 9999999999987632111 1111234555555556778888888888776532111 123456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhh
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISN 481 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (651)
...++..-..|-++....+++++.+..+. ++.+......-+..+.-++++.++|++-...-
T Consensus 481 s~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LF------------------ 541 (835)
T KOG2047|consen 481 SMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLF------------------ 541 (835)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC------------------
Confidence 66677767778888888899998887643 22222222222345566788888887533210
Q ss_pred hhhhccccccCCCCccCCCcccccccccccCCC-HHHHHHHHHHH----hh-cHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 482 MEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-TTTYNILMKAC----CT-DYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ll~~~----~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
. -|+ ...|+..+.-+ .+ ..+.|..+|++..+ |++|...-+--|+
T Consensus 542 ----------------------------k-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLl 591 (835)
T KOG2047|consen 542 ----------------------------K-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLL 591 (835)
T ss_pred ----------------------------C-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHH
Confidence 0 233 23555555443 33 78999999999998 6766443222122
Q ss_pred --HHHhcCCChHHHHHHHHHHHHC---------------------CCCCCHHHHHHHHH----------------HHHhc
Q 006303 556 --DACGGSGNVEGALQILKIMRED---------------------GMSPDVVAYTTAIK----------------VCVRS 596 (651)
Q Consensus 556 --~~~~~~g~~~~A~~~~~~~~~~---------------------~~~p~~~~~~~li~----------------~~~~~ 596 (651)
..--+.|-...|+.++++.... |+..+...|.--|. .=.+.
T Consensus 592 YA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtkl 671 (835)
T KOG2047|consen 592 YAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKL 671 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhh
Confidence 2222346667777777765432 23222333322221 12334
Q ss_pred CCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 597 KRLKQAFSLFEEMKHY-QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 597 g~~~~A~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
|.++.|..++....+. .-+.+...|.+.=.-=.++|+-+-.++.+++=+
T Consensus 672 GEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRikR 721 (835)
T KOG2047|consen 672 GEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRIKR 721 (835)
T ss_pred hhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6666666666554432 223445667777777777777555555444433
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.7e-09 Score=93.70 Aligned_cols=458 Identities=10% Similarity=0.023 Sum_probs=250.9
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHH
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKL 157 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~ 157 (651)
+.-+....++..|+.+++.-...+.+-+ ...-..++..+.+.|++++|+..+..+.+..-.|.. +..
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE-------~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e------l~v 95 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEE-------DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE------LGV 95 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhh-------HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc------cch
Confidence 3445567899999999998876654433 122234555678999999999999998875433322 122
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCH
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~ 237 (651)
.+..| +.-.|.+.+|..+-.+. |+.+.....+...-.+.++.++-..++..+.+..+-..+|......+-.+
T Consensus 96 nLAcc--~FyLg~Y~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HY 167 (557)
T KOG3785|consen 96 NLACC--KFYLGQYIEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHY 167 (557)
T ss_pred hHHHH--HHHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHH
Confidence 22222 22368999998887664 44445566677777788999999999888888778888888888888999
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCcccHHH-HHHHHHh----hcCCh------
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIID-VCGICGDYMKSRAIYEDLRSQNVTLNIYV-FNSLMNV----NAHDL------ 305 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~a~~~~~~~~~~g~~~~~~~-~~~ll~~----~~~~~------ 305 (651)
.+|+++|..++.. .|+....|.-+. +|.+..-++-+.+++.-..+. -||... .|..... +.|+.
T Consensus 168 QeAIdvYkrvL~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k 243 (557)
T KOG3785|consen 168 QEAIDVYKRVLQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKK 243 (557)
T ss_pred HHHHHHHHHHHhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHH
Confidence 9999999999984 356556665544 355666677777777766554 234332 2222221 11211
Q ss_pred ---------------------------HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 306 ---------------------------KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 306 ---------------------------~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
+.|++++--+... -+..-..|+--|.+.+++++|..+.+.+.-
T Consensus 244 ~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P------ 313 (557)
T KOG3785|consen 244 ELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP------ 313 (557)
T ss_pred HHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC------
Confidence 1122222111110 112222333345566777777666655431
Q ss_pred ccccHHHHHHHHHHH-----HcccCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 359 LKLDVFTYSTIVKVF-----ADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
..|-......++.+- .......-|.+.|+..-+++..-|.. -...+..++.-..++++++-+++.+..--...|
T Consensus 314 ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD 393 (557)
T KOG3785|consen 314 TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD 393 (557)
T ss_pred CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 122222222222111 11122444555555444444332222 223344455555567777777766665543444
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccC
Q 006303 433 SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFK 512 (651)
Q Consensus 433 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (651)
...+| +..+++..|++.+|.++|-.+.... -
T Consensus 394 ~Fn~N-~AQAk~atgny~eaEelf~~is~~~------------------------------------------------i 424 (557)
T KOG3785|consen 394 DFNLN-LAQAKLATGNYVEAEELFIRISGPE------------------------------------------------I 424 (557)
T ss_pred hhhhH-HHHHHHHhcChHHHHHHHhhhcChh------------------------------------------------h
Confidence 44443 5566666777777777775543221 2
Q ss_pred CCHHHHHHHHHHH-h--hcHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 513 PTTTTYNILMKAC-C--TDYYRVKALMNEMRTVGLSPNHISWTI-LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 513 ~~~~~~~~ll~~~-~--~~~~~a~~~~~~~~~~~~~p~~~~~~~-li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
.|..+|.+++.-| . +.++.|+.++-.+.. ..+..+.-. +..-|.+++.+=-|-+.|+++.. ..|++..|.
T Consensus 425 kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~--lDP~pEnWe- 498 (557)
T KOG3785|consen 425 KNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEI--LDPTPENWE- 498 (557)
T ss_pred hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHc--cCCCccccC-
Confidence 3455555555433 2 345555555443322 223333332 33556666666666666666665 356665553
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGS 633 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 633 (651)
|+-....-+|..+....-.|- ..+..-++..+...++
T Consensus 499 --------GKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 499 --------GKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPN 536 (557)
T ss_pred --------CccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCC
Confidence 222233345555543322222 2344455555554444
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-09 Score=100.33 Aligned_cols=283 Identities=12% Similarity=0.060 Sum_probs=143.1
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH
Q 006303 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ 163 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 163 (651)
.|+|.+|+.+..+-.+.+..|. . .+-..+.+....|+.+.+-..+.++-+.. +++ .....+....
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~-------l-~~l~aA~AA~qrgd~~~an~yL~eaae~~--~~~-----~l~v~ltrar 161 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPV-------L-AYLLAAEAAQQRGDEDRANRYLAEAAELA--GDD-----TLAVELTRAR 161 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchH-------H-HHHHHHHHHHhcccHHHHHHHHHHHhccC--CCc-----hHHHHHHHHH
Confidence 6888888888888777766654 1 12234555667888888888888877742 222 2223333334
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.....|+++.|..-++++.+.+ |........ ...+|.+.|++.....+
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~--pr~~~vlrL------------------------------a~r~y~~~g~~~~ll~~ 209 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMT--PRHPEVLRL------------------------------ALRAYIRLGAWQALLAI 209 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhC--cCChHHHHH------------------------------HHHHHHHhccHHHHHHH
Confidence 4455788888888887777655 444444444 44455555555555555
Q ss_pred HHHHHhcCCCCc-------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--hhcCChHHHHHHHHH
Q 006303 244 YDASKKHLSSPN-------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (651)
Q Consensus 244 ~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~a~~~~~~ 314 (651)
+..+.+.|.-.+ ..+|+.+++-....+..+.-...++...+. .+-+...-.+++. ..+|+.++|.++..+
T Consensus 210 l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~ 288 (400)
T COG3071 210 LPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIED 288 (400)
T ss_pred HHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHH
Confidence 555555443222 124444444444334444433344433322 0111111111111 223455555555555
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV 394 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~ 394 (651)
..+.+..|+ ... +-.+.+-++.+.-++..++-.+. .+-++..+.+|...|.+++.|.+|...|+..++.
T Consensus 289 ~Lk~~~D~~---L~~-~~~~l~~~d~~~l~k~~e~~l~~-----h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~-- 357 (400)
T COG3071 289 ALKRQWDPR---LCR-LIPRLRPGDPEPLIKAAEKWLKQ-----HPEDPLLLSTLGRLALKNKLWGKASEALEAALKL-- 357 (400)
T ss_pred HHHhccChh---HHH-HHhhcCCCCchHHHHHHHHHHHh-----CCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--
Confidence 544443333 111 11222334444444444433321 2233345555555566666666666666655443
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 395 TPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 395 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
.|+..+|+.+..++.+.|+...|.+.+++..
T Consensus 358 ~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 358 RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 4555666666666666666666665555544
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.9e-07 Score=85.83 Aligned_cols=419 Identities=10% Similarity=0.064 Sum_probs=292.7
Q ss_pred hhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc
Q 006303 124 IREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (651)
Q Consensus 124 ~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (651)
..++++..|..+|++.++.+ .. ...+.++-+..-.++..+..|..++++.+.. -|.-...|...+..=-.
T Consensus 84 esq~e~~RARSv~ERALdvd--~r------~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVD--YR------NITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcc--cc------cchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHH
Confidence 46888999999999999743 11 2334555444555678899999999998763 35555566666655567
Q ss_pred CCChHHHHHHhhhC---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 204 KPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (651)
Q Consensus 204 ~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (651)
.|+...|.++|.+- .++..+|.+.+..=.+-+.++.|..+|+...- +.|++.+|-.....=.++|....+..+|+
T Consensus 154 LgNi~gaRqiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~Vye 231 (677)
T KOG1915|consen 154 LGNIAGARQIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYE 231 (677)
T ss_pred hcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 89999999999873 55668999999999999999999999999887 45899999888888889999999999999
Q ss_pred HHHhC-CCc-ccHHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCC--HHhHHHHHHHHHhcCCHHHHHHH--------
Q 006303 281 DLRSQ-NVT-LNIYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMAD--MASYNILLKACCLAGNTVLAQEI-------- 346 (651)
Q Consensus 281 ~~~~~-g~~-~~~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~-------- 346 (651)
...+. |-. .+...+.+.... .++.++.|.-+|.-....- +.+ ...|......=-+-|+.....++
T Consensus 232 rAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q 310 (677)
T KOG1915|consen 232 RAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ 310 (677)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence 87664 211 122233333322 2357888888888777642 222 34455554444455665444332
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHH---HhcCCHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-------ITWSSLINAC---ANAGLVEQ 416 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~---~~~g~~~~ 416 (651)
|+...+ + .+.|-.+|--.+..-...|+.+...++|++.+.. ++|-. ..|..+--+| ....+++.
T Consensus 311 YE~~v~---~--np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~er 384 (677)
T KOG1915|consen 311 YEKEVS---K--NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVER 384 (677)
T ss_pred HHHHHH---h--CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 222222 1 3567778888888888889999999999999865 44422 1232222222 34678899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccC
Q 006303 417 AMHLFEEMLQAGCEPNSQCCNILLQACV----EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (651)
+.++++..++. ++-...||..+=-.|+ ++.+...|.+++....-
T Consensus 385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG------------------------------- 432 (677)
T KOG1915|consen 385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG------------------------------- 432 (677)
T ss_pred HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc-------------------------------
Confidence 99999988874 3444556655544443 56788888888865442
Q ss_pred CCCccCCCcccccccccccCCCHHHHHHHHHHH--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHH
Q 006303 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQI 570 (651)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 570 (651)
.-|-..+|-..|..- .++++.+..+++...+.+. -+..+|.-....-...|+.+.|..+
T Consensus 433 ------------------~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRai 493 (677)
T KOG1915|consen 433 ------------------KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAI 493 (677)
T ss_pred ------------------cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHH
Confidence 356666666555543 3588999999999988542 2677888888888889999999999
Q ss_pred HHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 571 LKIMREDG-MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 571 ~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|+-.++.. +......|.+.|+--...|.+++|..+++++++.
T Consensus 494 felAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 494 FELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 99988732 2223456777777778899999999999998753
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.36 E-value=6.8e-08 Score=89.21 Aligned_cols=293 Identities=12% Similarity=0.122 Sum_probs=210.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVK 371 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 371 (651)
.+-..+++...|++..|++...+-.+.+- .....|..-..+....|+.+.+-.++.++.+.. | .++....-....
T Consensus 87 ~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~--~--~~~l~v~ltrar 161 (400)
T COG3071 87 ALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA--G--DDTLAVELTRAR 161 (400)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccC--C--CchHHHHHHHHH
Confidence 44455666677888888888888777652 234456566677788899999999999888731 1 345566777888
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------CCNILLQACV 444 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~~~~ 444 (651)
.....|+++.|..-++++.+.+.. +........++|.+.|++.....++..+.+.+.-.+.. +|+.+++-..
T Consensus 162 lll~~~d~~aA~~~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~ 240 (400)
T COG3071 162 LLLNRRDYPAARENVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR 240 (400)
T ss_pred HHHhCCCchhHHHHHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence 889999999999999999887643 67778888999999999999999999999988654443 4555555444
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHH
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 524 (651)
..+..+.-...++..... .+.++..-.+++.-
T Consensus 241 ~~~~~~gL~~~W~~~pr~------------------------------------------------lr~~p~l~~~~a~~ 272 (400)
T COG3071 241 DDNGSEGLKTWWKNQPRK------------------------------------------------LRNDPELVVAYAER 272 (400)
T ss_pred ccccchHHHHHHHhccHH------------------------------------------------hhcChhHHHHHHHH
Confidence 444444433444433221 12223223333333
Q ss_pred H--hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 525 C--CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 525 ~--~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
+ |++.++|.++..+..+.+..|+.. ..-.+.+-++...-.+..++-.+.. .-++..+.+|...|.+.+.|.+|
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA 347 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKA 347 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHH
Confidence 3 458899999999998887776622 2334567788877777777766532 23457788999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.++|+...+ ..|+..+|+-+..++.+.|+.++|.+..+.--
T Consensus 348 ~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 348 SEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 999997775 57999999999999999999999988665443
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-08 Score=103.52 Aligned_cols=532 Identities=12% Similarity=0.110 Sum_probs=279.4
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
..|+..+|.+++.-|+..|+.+.|- +|..|........ ...++.++..+.+.++.+.+. .|
T Consensus 21 i~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~-------e~vf~~lv~sh~~And~Enpk-----------ep 81 (1088)
T KOG4318|consen 21 ILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVR-------EGVFRGLVASHKEANDAENPK-----------EP 81 (1088)
T ss_pred CCCchhhHHHHHHHHcccCCCcccc-chhhhhccccccc-------chhHHHHHhcccccccccCCC-----------CC
Confidence 3344589999999999999999888 8888865532222 333445555556666665543 22
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHH---HHHHHHHHHhc----C-------------CCccccchHHHHHHHHhcCCC
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEM---FVGLMEVLEEF----R-------------LPVKELDEEFRIVQLCVNKPD 206 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~---A~~~~~~~~~~----~-------------~~~~~~~~~~~l~~~~~~~~~ 206 (651)
.. .++..+.+ .|...|+... ..+.++.+... | ..|.........+....-.|-
T Consensus 82 ~a----Dtyt~Ll~---ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 82 LA----DTYTNLLK---AYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL 154 (1088)
T ss_pred ch----hHHHHHHH---HHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH
Confidence 11 23444444 3334554433 22222222111 1 112222223334444555666
Q ss_pred hHHHHHHhhhCCCCCccHHH--HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 207 VNLAIRYACIVPRADILFCN--FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
++.+.++....|.....-.. ++.-..... ....++.+......-.|+..+|..+++.-...|+.+.|..++.+|.+
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 77777777666654321111 122222222 22333333332221248999999999999999999999999999999
Q ss_pred CCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH
Q 006303 285 QNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (651)
Q Consensus 285 ~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (651)
.|+..+.+-|..++.+ .++...+..++.-|.+.|+.|+..|+...+-.+.++|....+.+..+.-. -.+..
T Consensus 233 ~gfpir~HyFwpLl~g-~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~sq~~h--------g~tAa 303 (1088)
T KOG4318|consen 233 KGFPIRAHYFWPLLLG-INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEGSQLAH--------GFTAA 303 (1088)
T ss_pred cCCCcccccchhhhhc-CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccccchhh--------hhhHH
Confidence 9999999888888877 77888889999999999999999999998888877665332222111100 01122
Q ss_pred HHHHHHHHHHcccCH-----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CC-CCHHHH
Q 006303 365 TYSTIVKVFADAKWW-----QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CE-PNSQCC 436 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~ 436 (651)
.+..++++.....+. .-....+.+..-.|+......|...... ..+|+-+...++-..+..-- .. .++..|
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 233333332222222 2223333333334444444555544443 23566666666655553211 11 123345
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccc-cCCchhhhhhhhh-hccccccCCCCccCCCcccccccccc--cC
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGED-YDGNTDRISNMEH-KDKQSITNTPNFVPNSHYSSFDKRFS--FK 512 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 512 (651)
..++.-|.+.-+..-...++. ...++....+.. .....+.+..... ....... . +............+ ..
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~--~~qgls~~l~se~tp~vsell~~lrkns~lr~lv---~-Lss~Eler~he~~~~~~h 456 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYY--AGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV---G-LSSTELERSHEPWPLIAH 456 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHH--HHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh---h-hhHHHHhcccccchhhhh
Confidence 444544443222111111111 000000000000 0000000000000 0000000 0 00000000000000 01
Q ss_pred CCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC--CCCCCHHHHHH
Q 006303 513 PTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED--GMSPDVVAYTT 588 (651)
Q Consensus 513 ~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~--~~~p~~~~~~~ 588 (651)
+-...-+.++..|++ +..+++..-+..... . -...|..||+-+......+.|..+.++.... .+..|..-+..
T Consensus 457 ~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-l--f~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~ 533 (1088)
T KOG4318|consen 457 LIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-L--FAGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTS 533 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H--hhhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHH
Confidence 112233444445543 333444332222221 1 1267889999999999999999999888642 34456667888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQ-IQP-NLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
+.+.+.+.+....+.+++++|.+.- ..| ...++..+++.....|+.+..++..+++.
T Consensus 534 l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lv 592 (1088)
T KOG4318|consen 534 LQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILV 592 (1088)
T ss_pred HHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHH
Confidence 8999999999999999999998532 223 25677778888888888887777555543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.3e-12 Score=83.36 Aligned_cols=50 Identities=36% Similarity=0.618 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 581 PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 581 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 56677777777777777777777777777777777777777777776653
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.3e-10 Score=114.91 Aligned_cols=88 Identities=19% Similarity=0.209 Sum_probs=49.3
Q ss_pred HHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCC
Q 006303 243 AYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~ 320 (651)
++-.+...|+.|+-.+|..++.-|+..|+.+.|- +|..|.-+....+...|+.++.... ++.+.+.
T Consensus 12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk----------- 79 (1088)
T KOG4318|consen 12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK----------- 79 (1088)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence 4455556666666666666666666666666665 6666655544445555555555432 3333332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVL 342 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~ 342 (651)
.|-+.+|+.|+.+|...||+..
T Consensus 80 ep~aDtyt~Ll~ayr~hGDli~ 101 (1088)
T KOG4318|consen 80 EPLADTYTNLLKAYRIHGDLIL 101 (1088)
T ss_pred CCchhHHHHHHHHHHhccchHH
Confidence 3555556666666665555543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-07 Score=90.57 Aligned_cols=223 Identities=15% Similarity=0.043 Sum_probs=138.3
Q ss_pred HHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccH-HHHHHHHhhc
Q 006303 158 LKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILF-CNFVREFGKK 234 (651)
Q Consensus 158 l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~-~~l~~~~~~~ 234 (651)
+..-...+...|++++|+....+++..+ |++..++..-+-++.+.+.+++|+.+.+.-+. ....+ ..-+-+..+.
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~--pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIV--PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcC--CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence 4444556777899999999999999866 88899999999999999999999977655432 11112 2334445588
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHHHHhhcCChHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
++.++|+..++.... .+..+...-...+-+.|++++|.++|+.+.+.+... +...-..++.+-. +... +
T Consensus 93 nk~Dealk~~~~~~~----~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a-----~l~~-~ 162 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDR----LDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA-----ALQV-Q 162 (652)
T ss_pred ccHHHHHHHHhcccc----cchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH-----hhhH-H
Confidence 999999999983222 233466666777889999999999999998775431 1111122222111 1111 1
Q ss_pred HHHHCCCCCCHHhHHHHH---HHHHhcCCHHHHHHHHHHHHHhhhc----CCcc-----ccH-HHHHHHHHHHHcccCHH
Q 006303 314 NMQKLGVMADMASYNILL---KACCLAGNTVLAQEIYGEVKHLEAK----GVLK-----LDV-FTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~-----~~~-~~~~~l~~~~~~~~~~~ 380 (651)
.+......| ..+|..+. -.+...|++.+|+++++...++..+ +... -.. .+-..|...+...|+-+
T Consensus 163 ~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ 241 (652)
T KOG2376|consen 163 LLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTA 241 (652)
T ss_pred HHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchH
Confidence 222222222 22444433 3445678888888888877433221 1000 000 11233555666778888
Q ss_pred HHHHHHHHHHHCC
Q 006303 381 MALKVKEDMLSAG 393 (651)
Q Consensus 381 ~a~~~~~~m~~~~ 393 (651)
+|..++...+...
T Consensus 242 ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 242 EASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhc
Confidence 8888887777654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=1.9e-07 Score=90.02 Aligned_cols=465 Identities=10% Similarity=0.009 Sum_probs=247.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..-+..+.+-+..+.++.-|+-+-++....+.+|... ..++..+.-.|++++|..++..=.-.+...
T Consensus 16 ~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~dp~d~---------~~~aq~l~~~~~y~ra~~lit~~~le~~d~---- 82 (611)
T KOG1173|consen 16 LEKYRRLVRDALMQHRYKTALFWADKVAGLTNDPADI---------YWLAQVLYLGRQYERAAHLITTYKLEKRDI---- 82 (611)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHhccCChHHH---------HHHHHHHHhhhHHHHHHHHHHHhhhhhhhH----
Confidence 5556667777778889999999999998888888743 245666778888888888776542211111
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHH----hcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
..... +...+....++++|..++.... ...-.+.+. ...-....+.+... .......+..
T Consensus 83 --~cryL---~~~~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~----------~~~l~~n~~~~~~~-~~~essic~l 146 (611)
T KOG1173|consen 83 --ACRYL---AAKCLVKLKEWDQALLVLGRGHVETNPFSYYEKDA----------ANTLELNSAGEDLM-INLESSICYL 146 (611)
T ss_pred --HHHHH---HHHHHHHHHHHHHHHHHhcccchhhcchhhcchhh----------hceeccCccccccc-ccchhceeee
Confidence 01111 1223445688888888877321 000001000 00000001110000 0001122222
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhC-CCcccHHHHHHH-------
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ-NVTLNIYVFNSL------- 297 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~-g~~~~~~~~~~l------- 297 (651)
-...|....+.++|...|.+... .|+..+..+...-... =..++-.++|+.+.-. -...+......+
T Consensus 147 Rgk~y~al~n~~~ar~~Y~~Al~----~D~~c~Ea~~~lvs~~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k 222 (611)
T KOG1173|consen 147 RGKVYVALDNREEARDKYKEALL----ADAKCFEAFEKLVSAHMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCK 222 (611)
T ss_pred eeehhhhhccHHHHHHHHHHHHh----cchhhHHHHHHHHHHHhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhh
Confidence 33455566777777777777665 3444433333221111 0111112222210000 000011111111
Q ss_pred ------------------------HHh------hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 298 ------------------------MNV------NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 298 ------------------------l~~------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+.. +..++.+..++.+.+.+.. +++...+..-|.++...|+..+-..+=
T Consensus 223 ~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~ls 301 (611)
T KOG1173|consen 223 NRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLS 301 (611)
T ss_pred hccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHH
Confidence 111 1135555555555555432 344444544555555555554444444
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.++.+. .|....+|-++.--|...|++.+|.+.|.+....+.. =...|-.....|.-.|.-|+|+..+...-+.
T Consensus 302 h~LV~~-----yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl 375 (611)
T KOG1173|consen 302 HKLVDL-----YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL 375 (611)
T ss_pred HHHHHh-----CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh
Confidence 444432 2334455555555555556666666666555433211 2234555555666666666666655555442
Q ss_pred CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 428 GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 428 ~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
=.. --+..| +.--|.+.++.+.|.+.|.+...
T Consensus 376 ~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~a--------------------------------------------- 408 (611)
T KOG1173|consen 376 MPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALA--------------------------------------------- 408 (611)
T ss_pred ccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHh---------------------------------------------
Confidence 100 011111 22234455566666666654432
Q ss_pred cccccCC-CHHHHHHHHH-HH-hhcHHHHHHHHHHHHHc----CC-CC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 507 KRFSFKP-TTTTYNILMK-AC-CTDYYRVKALMNEMRTV----GL-SP-NHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 507 ~~~~~~~-~~~~~~~ll~-~~-~~~~~~a~~~~~~~~~~----~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
+.| |+..++-+-- +| .+.+.+|..+|+..... +- .+ ...+++.|.++|.+++.+++|+..+++.+..
T Consensus 409 ----i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 409 ----IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ----cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 334 3444444422 23 35788999988877632 11 11 3456889999999999999999999998875
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARS 629 (651)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~ 629 (651)
. +.|..++.++.-.|...|+++.|...|.+.. .+.||..+-..++..+.
T Consensus 485 ~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 485 S-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred C-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 3 4488899999999999999999999999988 57898877777777554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-07 Score=83.17 Aligned_cols=289 Identities=12% Similarity=0.092 Sum_probs=190.4
Q ss_pred CCHHHHHHHHHHHHhc-CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
++...+...+--+... -++-|......+.+.+...|+.++|+..|++....+ |+ +..
T Consensus 210 ~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d--py--~i~------------------ 267 (564)
T KOG1174|consen 210 FKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN--PD--NVE------------------ 267 (564)
T ss_pred cccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC--hh--hhh------------------
Confidence 4444444443333222 133466677777777778888888888777765431 11 100
Q ss_pred HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 314 NMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
....|.. .+...|+++....+...+... ..-+...|-.-.......++++.|+.+-++.++..
T Consensus 268 ---------~MD~Ya~---LL~~eg~~e~~~~L~~~Lf~~-----~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~ 330 (564)
T KOG1174|consen 268 ---------AMDLYAV---LLGQEGGCEQDSALMDYLFAK-----VKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE 330 (564)
T ss_pred ---------hHHHHHH---HHHhccCHhhHHHHHHHHHhh-----hhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC
Confidence 1112222 234566777766666666542 12344445555555667788888888888887764
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccC
Q 006303 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYD 473 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 473 (651)
+.+...|-.=...+...|+.++|.-.|+..+... +.+...|.-|+.+|...|.+.+|.-.-+.....
T Consensus 331 -~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~----------- 397 (564)
T KOG1174|consen 331 -PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL----------- 397 (564)
T ss_pred -cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-----------
Confidence 2255556555667788889999988888887653 356678999999999999988887666544322
Q ss_pred CchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH-HHHh---hcHHHHHHHHHHHHHcCCCCcHH
Q 006303 474 GNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC---TDYYRVKALMNEMRTVGLSPNHI 549 (651)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~---~~~~~a~~~~~~~~~~~~~p~~~ 549 (651)
+.-+..+...+- ..|. ..-++|.++++...+ +.|+..
T Consensus 398 -------------------------------------~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~ 438 (564)
T KOG1174|consen 398 -------------------------------------FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYT 438 (564)
T ss_pred -------------------------------------hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccH
Confidence 122223333221 2222 135788888888776 456543
Q ss_pred -HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 006303 550 -SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618 (651)
Q Consensus 550 -~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 618 (651)
..+.+...+...|..+++..++++... ..||....+.|.+.+...+.+.+|.+.|....+. .|+.
T Consensus 439 ~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~--dP~~ 504 (564)
T KOG1174|consen 439 PAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ--DPKS 504 (564)
T ss_pred HHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--Cccc
Confidence 567777888999999999999999887 4789999999999999999999999999988753 4544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.2e-11 Score=81.58 Aligned_cols=50 Identities=28% Similarity=0.557 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
||..+||++|++|++.|++++|.++|++|.+.|++||..||+.+|.+|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.1e-09 Score=108.41 Aligned_cols=253 Identities=13% Similarity=0.079 Sum_probs=154.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCcc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPL 147 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~ 147 (651)
..++..+...|...|+++.|+.++++.++.=........+.....++.++..|...+++++|+.+|+++... ...++
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 667777999999999999999999998876100000112223455567888899999999999999999875 12222
Q ss_pred ccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCC------CccccchHHHHHHHHhcCCChHHHHHHhhhC----
Q 006303 148 ELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRL------PVKELDEEFRIVQLCVNKPDVNLAIRYACIV---- 217 (651)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---- 217 (651)
+.....++.+....|.+.|++++|...++....... .+.-...+..++..|...+++++|..++...
T Consensus 279 ---h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~ 355 (508)
T KOG1840|consen 279 ---HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY 355 (508)
T ss_pred ---CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 223455566666678889999999988887654211 1222233444555566666666665554431
Q ss_pred ---CC--C---CccHHHHHHHHhhcCCHHHHHHHHHHHHhcC----C--CC-cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 218 ---PR--A---DILFCNFVREFGKKRDLVSALRAYDASKKHL----S--SP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 218 ---~~--~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
+. + ..+++.|...|...|++++|.++|++++... . .+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 356 ~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 356 LDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 11 1 1345555555555555555555555544321 1 11 1223444555555555555555555443
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG--VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA 355 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 355 (651)
.. + |+..| .+-...+|..|...|...|++++|+++.+.+....+
T Consensus 436 ~~--------------------------i---~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~ 481 (508)
T KOG1840|consen 436 KD--------------------------I---MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNARE 481 (508)
T ss_pred HH--------------------------H---HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 21 1 22222 222356889999999999999999999998875443
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.25 E-value=4.6e-09 Score=104.05 Aligned_cols=256 Identities=16% Similarity=0.143 Sum_probs=177.4
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhc-----CC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKH-----LS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNI 291 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~ 291 (651)
....+...|...|..+|+++.|..+++...+. |. .|... ..+.+...|...+++++|..+|+++..
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~------- 269 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALT------- 269 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------
Confidence 33456666888888999999998888877653 21 13332 334466777888888888888876543
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CCccccHH-HHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDVF-TYST 368 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~-~~~~ 368 (651)
+++.......+--..+++.|..+|.+.|++++|...++...++.+. |...|.+. .++.
T Consensus 270 -------------------i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 270 -------------------IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred -------------------HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 2333222222223557888888999999999999999888776543 22233333 3667
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----C--CC-CHH
Q 006303 369 IVKVFADAKWWQMALKVKEDMLSA---GVTP----NTITWSSLINACANAGLVEQAMHLFEEMLQAG----C--EP-NSQ 434 (651)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~--~~-~~~ 434 (651)
+...++..+++++|..+++...+. -+.+ -..+++.|...|.+.|++++|.++++++++.. . .+ ...
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~ 410 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGK 410 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhH
Confidence 778888999999999988876542 1122 23578899999999999999999998886641 1 12 234
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (651)
.++.|...|.+.+.+.+|.++|.+..
T Consensus 411 ~l~~la~~~~~~k~~~~a~~l~~~~~------------------------------------------------------ 436 (508)
T KOG1840|consen 411 PLNQLAEAYEELKKYEEAEQLFEEAK------------------------------------------------------ 436 (508)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHHH------------------------------------------------------
Confidence 67778888888888888888887533
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 515 TTTYNILMKACCTDYYRVKALMNEMRTVGL-SP-NHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
.+. +..|. .| ...+|..|...|...|++++|+++.+....
T Consensus 437 -------------------~i~---~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 437 -------------------DIM---KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred -------------------HHH---HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 122 22222 13 355899999999999999999999888764
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.1e-09 Score=109.16 Aligned_cols=211 Identities=10% Similarity=-0.019 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc---------CCChHHHHHHhhhC----CCCCccHHHHHHHHhhcC
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN---------KPDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 235 (651)
+..++|+..|++.++.. |+....+..++.++.. .+++++|...++++ |.+..++..+...+...|
T Consensus 275 ~~~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc
Confidence 56788999999888754 6666666555544321 12244444443332 333444444445555555
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
++++|...|++..+.+ | +...+..+...+...|++++|+..+++..+....
T Consensus 353 ~~~~A~~~~~~Al~l~--P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-------------------------- 404 (553)
T PRK12370 353 EYIVGSLLFKQANLLS--PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-------------------------- 404 (553)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--------------------------
Confidence 5555555555554422 2 2334444445555555555555555554444221
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
+...+..++..+...|++++|...++++... .+| +...+..+..++...|++++|...+.++...
T Consensus 405 --------~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~-----~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~- 470 (553)
T PRK12370 405 --------RAAAGITKLWITYYHTGIDDAIRLGDELRSQ-----HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ- 470 (553)
T ss_pred --------ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh-----ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-
Confidence 1222222333344455666666666555431 122 2233444555555666666666666555433
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 394 VTPN-TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 394 ~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.|+ ....+.+...|...| +.|...++.+.+
T Consensus 471 -~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 471 -EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred -cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 222 222333333444444 355554554443
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.22 E-value=4.1e-07 Score=82.44 Aligned_cols=440 Identities=12% Similarity=0.059 Sum_probs=240.2
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+....++..|+.+++.-...+-+.. .....++..|. ...|++++|+..|+-+..... .+...+..+....-
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~--fhLgdY~~Al~~Y~~~~~~~~--~~~el~vnLAcc~F 102 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCY--FHLGDYEEALNVYTFLMNKDD--APAELGVNLACCKF 102 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHH--HhhccHHHHHHHHHHHhccCC--CCcccchhHHHHHH
Confidence 4567788888888887664332221 23444444333 347999999999998887543 33444555655555
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
-.|.+.+|..+....|+++.--..|...--+.++-++-..+.+.+... ..---.|....-..-.+++|+++|.+.
T Consensus 103 yLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 103 YLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 688999999999998888766666666777778877777766665431 111222333333345789999999998
Q ss_pred HhCCCcccHHHHHHHHHhhc---CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc
Q 006303 283 RSQNVTLNIYVFNSLMNVNA---HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
...+ |+-...|..+..|- .-++-+.++++-..+. ++.++...|.......+.=.-..|++-.+.+.. .+.
T Consensus 178 L~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~lad---N~~- 250 (557)
T KOG3785|consen 178 LQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELAD---NID- 250 (557)
T ss_pred HhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHh---ccc-
Confidence 8763 44444454444322 3455566666655543 222344444444333332111222222222221 110
Q ss_pred cccHHHHHHHHHHHHcc-----cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 006303 360 KLDVFTYSTIVKVFADA-----KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 434 (651)
.. -..+.-++++ ..-+.|++++--+... .| .....|+-.|.+.+++.+|..+.+++. +.++.
T Consensus 251 --~~---~~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~ 317 (557)
T KOG3785|consen 251 --QE---YPFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLNLIIYYLNQNDVQEAISLCKDLD----PTTPY 317 (557)
T ss_pred --cc---chhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--HhhhhheeeecccccHHHHHHHHhhcC----CCChH
Confidence 00 1112222332 3457788877666643 33 334456667889999999999888773 22333
Q ss_pred HHHHHHHHHHhcCCh-------hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccc
Q 006303 435 CCNILLQACVEACQF-------DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDK 507 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~-------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 507 (651)
-|-.-.-.++..|+- .-|.+.|+-.-.+...-
T Consensus 318 EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ec----------------------------------------- 356 (557)
T KOG3785|consen 318 EYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALEC----------------------------------------- 356 (557)
T ss_pred HHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccc-----------------------------------------
Confidence 332211123333432 23333333221111100
Q ss_pred ccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 508 RFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 508 ~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..-|...+..+..- +...++.+...++.+..--...|... -.+..+++..|++.+|+++|-++....++ |..+|-
T Consensus 357 --DTIpGRQsmAs~fF-L~~qFddVl~YlnSi~sYF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~ 431 (557)
T KOG3785|consen 357 --DTIPGRQSMASYFF-LSFQFDDVLTYLNSIESYFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIK-NKILYK 431 (557)
T ss_pred --ccccchHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHH
Confidence 00122221111000 12355666666666555423333333 34677888888888888888777665444 555665
Q ss_pred -HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 588 -TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY-ITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 588 -~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.|.++|.+.|+++.|+.++-++ .-..+..+. ..+.+-|.+.+.+--|.+++..++
T Consensus 432 s~LArCyi~nkkP~lAW~~~lk~---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE 488 (557)
T KOG3785|consen 432 SMLARCYIRNKKPQLAWDMMLKT---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE 488 (557)
T ss_pred HHHHHHHHhcCCchHHHHHHHhc---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 4556778888888876665555 333334333 334457777777766666555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.6e-08 Score=93.81 Aligned_cols=197 Identities=12% Similarity=0.050 Sum_probs=112.5
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 4455666666777777777777777666543 2245566666667777777777777777776654 3344556666666
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
+...|++++|.+.+++......
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~---------------------------------------------------------- 130 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPL---------------------------------------------------------- 130 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccc----------------------------------------------------------
Confidence 6777777777777765542110
Q ss_pred HHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 523 KACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 523 ~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
.......+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|
T Consensus 131 ---------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 131 ---------------------YPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred ---------------------cccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHH
Confidence 00112233334555556666666666666655532 11344555555666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
.+++++..+. ...+...+..+...+...|+.++|....+
T Consensus 189 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 227 (234)
T TIGR02521 189 RAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGA 227 (234)
T ss_pred HHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 6666666544 23344455555555556666665555433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.5e-06 Score=85.42 Aligned_cols=246 Identities=12% Similarity=0.040 Sum_probs=140.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+++...++..+.++... |...+.....+-.+...|+.++|....... +.+..-|..+.-.+....++++|++.
T Consensus 20 ~kQYkkgLK~~~~iL~k~--~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 20 TKQYKKGLKLIKQILKKF--PEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHhHHHHHHHHHHhC--CccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHH
Confidence 477888888888888733 555565666666666777777777765543 33446677777777777778888888
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHHh--hcCChHHHHHHHHHHHHCC-
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNV--NAHDLKFTLEVYKNMQKLG- 319 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~- 319 (651)
|......+. -|...|.-+.-.=+..|+++...+.-..+.+. .|. ...|..+..+ ..|+...|..++++..+..
T Consensus 98 y~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~ 174 (700)
T KOG1156|consen 98 YRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQN 174 (700)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 877776332 24555555544445666776666666665554 222 2334333333 2367777777777776543
Q ss_pred CCCCHHhHHHHH------HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 320 VMADMASYNILL------KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 320 ~~~~~~~~~~ll------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..|+...+.... ....+.|..+.|.+.+...... ..|.. .-..-...+.+.+++++|..++..++..
T Consensus 175 ~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~------i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r 248 (700)
T KOG1156|consen 175 TSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ------IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER 248 (700)
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH------HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh
Confidence 234544443322 2334556666666665544321 12222 2234455667777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHH-hcCCHHHHH-HHHHHHHH
Q 006303 393 GVTPNTITWSSLINACA-NAGLVEQAM-HLFEEMLQ 426 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~-~~g~~~~a~-~~~~~~~~ 426 (651)
.||..-|...+..+. +-.+.-++. .+|....+
T Consensus 249 --nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~ 282 (700)
T KOG1156|consen 249 --NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE 282 (700)
T ss_pred --CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 455555544443333 233333333 44544433
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.4e-08 Score=94.12 Aligned_cols=199 Identities=12% Similarity=0.019 Sum_probs=134.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+...
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-------------- 96 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP-------------- 96 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--------------
Confidence 556678888888899999999998887643 13466777888888888888888888887765421
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
.+...+..+...+...|++++|.+.++.+.... ..+.....+..+...+...|++++
T Consensus 97 --------------------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~ 153 (234)
T TIGR02521 97 --------------------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP---LYPQPARSLENAGLCALKAGDFDK 153 (234)
T ss_pred --------------------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---ccccchHHHHHHHHHHHHcCCHHH
Confidence 233455556666667777777777777766421 012233455566667777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
|...+++..... +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus 154 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 230 (234)
T TIGR02521 154 AEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 777777776653 224556666777777777777777777777665 24455556666667777777777777766554
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=3.1e-08 Score=103.38 Aligned_cols=261 Identities=12% Similarity=0.028 Sum_probs=173.8
Q ss_pred CHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHH---------cccCHHHHHHHHH
Q 006303 323 DMASYNILLKACCL-----AGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA---------DAKWWQMALKVKE 387 (651)
Q Consensus 323 ~~~~~~~ll~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~---------~~~~~~~a~~~~~ 387 (651)
+...|...+.+... .+++++|...|++..+ ..|+ ...|..+..++. ..+++++|...++
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~------ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~ 328 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVN------MSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAI 328 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHh------cCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 44555555554322 1346788889988887 3444 445555555443 2345889999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
+..+.+.. +...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++....
T Consensus 329 ~Al~ldP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l----- 401 (553)
T PRK12370 329 KATELDHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL----- 401 (553)
T ss_pred HHHhcCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 99887533 67788888888889999999999999998875 445667888888899999999999999987764
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCH-HHHHHH--HHHHhhcHHHHHHHHHHHHHcCC
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNIL--MKACCTDYYRVKALMNEMRTVGL 544 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l--l~~~~~~~~~a~~~~~~~~~~~~ 544 (651)
.|+. ..+..+ +....+++++|...++++.+...
T Consensus 402 --------------------------------------------~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~ 437 (553)
T PRK12370 402 --------------------------------------------DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHL 437 (553)
T ss_pred --------------------------------------------CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcc
Confidence 3332 111121 22223578899999988876532
Q ss_pred CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHH
Q 006303 545 SPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDV-VAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYI 622 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~ 622 (651)
+-+...+..+..++...|++++|...+.++... .|+. ...+.+...|...| ++|...++++.+ .+..+....+.
T Consensus 438 p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~ 513 (553)
T PRK12370 438 QDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLL 513 (553)
T ss_pred ccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHH
Confidence 224556777888888999999999999887664 3443 34455556677777 478887777763 23344444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 006303 623 TLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 623 ~l~~~~~~~g~~~~a~~~~~~~~~m~~~ 650 (651)
.++.++ .|+.+.+.. ++++.++
T Consensus 514 ~~~~~~--~g~~~~~~~----~~~~~~~ 535 (553)
T PRK12370 514 PLVLVA--HGEAIAEKM----WNKFKNE 535 (553)
T ss_pred HHHHHH--HhhhHHHHH----HHHhhcc
Confidence 555554 455444333 2555544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.5e-08 Score=92.74 Aligned_cols=283 Identities=13% Similarity=0.064 Sum_probs=216.4
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH----HHHHHhhhCCCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
..++......+-..+++.+..++++.+.+.. |.....+..-+..+.+.|+.. .+.++.+..|..+.+|.+++-.
T Consensus 244 ~dll~~~ad~~y~~c~f~~c~kit~~lle~d--pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 244 LDLLAEKADRLYYGCRFKECLKITEELLEKD--PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred HHHHHHHHHHHHHcChHHHHHHHhHHHHhhC--CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 3445555556666899999999999998855 555444544455666666654 4566677789999999999999
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHHHHHhhcCChHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNSLMNVNAHDLKFT 308 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~ll~~~~~~~~~a 308 (651)
|.-.|++.+|++.|.+... +.|. ...|-.+...|+-.|..++|...|...-+.=..-. +..|..+=....++.+.|
T Consensus 322 Yl~i~k~seARry~SKat~--lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLA 399 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATT--LDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLA 399 (611)
T ss_pred HHHhcCcHHHHHHHHHHhh--cCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHH
Confidence 9999999999999998876 3343 56899999999999999999999988765421112 233333333445889999
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-C-ccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-V-LKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.+.|.+..... +-|+..++-+.-.....+.+.+|..+|+......+.- . ..--..+++.|..+|.+.+++++|+..+
T Consensus 400 e~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~ 478 (611)
T KOG1173|consen 400 EKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYY 478 (611)
T ss_pred HHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHH
Confidence 99999987653 4478888888888888899999999999887422111 0 1124557889999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
++.+... +-+..++..+.-.|...|+++.|.+.|.+.... .|+..+...++..+..
T Consensus 479 q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~aie 534 (611)
T KOG1173|consen 479 QKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLAIE 534 (611)
T ss_pred HHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHHHH
Confidence 9999875 448999999999999999999999999998864 7777777777765543
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.7e-06 Score=85.80 Aligned_cols=292 Identities=13% Similarity=0.054 Sum_probs=154.1
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
...+...|++++|++.|++-... +.. ....+-.-+..+.+.|+.++|..+|..++..+ |++..++..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~D-------k~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~ 80 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILD-------KLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEE 80 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCC-------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHH
Confidence 34467889999999999775542 222 12223333335556899999999999999877 777776666666
Q ss_pred HHhcCC-----ChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHH-HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 200 LCVNKP-----DVNLAIRYACIV----PRADILFCNFVREFGKKRDLV-SALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 200 ~~~~~~-----~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+..-.. +.+.-..+++.+ |.....-...+. +..-..+. .+...+..+..+|+++ +|+.|-..|...
T Consensus 81 ~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~-~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~ 156 (517)
T PF12569_consen 81 ALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLD-FLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDP 156 (517)
T ss_pred HHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcc-cCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcCh
Confidence 552222 222223333222 211111110011 11101111 1222333333444311 333333333322
Q ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCC----------CCCCHH--hHHHHHHHHHhc
Q 006303 270 GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG----------VMADMA--SYNILLKACCLA 337 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~----------~~~~~~--~~~~ll~~~~~~ 337 (651)
.+.+-..+++..... .+...+ -+|... ++..+...|...
T Consensus 157 ~K~~~i~~l~~~~~~-----------------------------~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~ 207 (517)
T PF12569_consen 157 EKAAIIESLVEEYVN-----------------------------SLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYL 207 (517)
T ss_pred hHHHHHHHHHHHHHH-----------------------------hhcccCCCCCccccccCCchHHHHHHHHHHHHHHHh
Confidence 222222222222211 111110 123332 334445666677
Q ss_pred CCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
|++++|.+.++.... ..|+ +..|..-...|-+.|++++|.+.++.....+.. |...=+.....+.+.|+.++
T Consensus 208 g~~~~Al~~Id~aI~------htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~ 280 (517)
T PF12569_consen 208 GDYEKALEYIDKAIE------HTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEE 280 (517)
T ss_pred CCHHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHH
Confidence 777777777777665 3455 446666677777777777777777777766543 66666667777777777777
Q ss_pred HHHHHHHHHHcCCCCCHHH--------HHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 417 AMHLFEEMLQAGCEPNSQC--------CNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~--------~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
|.+++....+.+..|.... ......+|.+.|++..|++.|..+.+
T Consensus 281 A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 281 AEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 7777777765543222111 12334567777777777777766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.2e-06 Score=80.83 Aligned_cols=453 Identities=13% Similarity=0.064 Sum_probs=281.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...+++...+...+.++.. .|... .++.+. ...+...|+.++|......-+... +.+...|..++-.+.
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k--~~eHg---eslAmk---GL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R 86 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKK--FPEHG---ESLAMK---GLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQR 86 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHh--CCccc---hhHHhc---cchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHh
Confidence 45788899999999988883 33322 122111 112334699999999888776643 778889999999999
Q ss_pred cCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHH
Q 006303 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRA 277 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 277 (651)
...++++|.+.|..+ +++...+.-|.-.-.+.|+++..........+. .| ....|..+..++.-.|++..|..
T Consensus 87 ~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~ 164 (700)
T KOG1156|consen 87 SDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALE 164 (700)
T ss_pred hhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998764 556677777777778889999999988888873 34 35568888888888999999999
Q ss_pred HHHHHHhCCC-cccHHHHHHHHH--------hhcCChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHH
Q 006303 278 IYEDLRSQNV-TLNIYVFNSLMN--------VNAHDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 278 ~~~~~~~~g~-~~~~~~~~~ll~--------~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+++...+... .|+...+..... .-+|..+.|++.+..-... ..|-. .-..-...+.+.+++++|..+|
T Consensus 165 il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y 242 (700)
T KOG1156|consen 165 ILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVY 242 (700)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHH
Confidence 9999887642 355444433222 2345667776666554332 12322 2334456778899999999999
Q ss_pred HHHHHhhhcCCccccHHHHHH-HHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVFTYST-IVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
..+.. ..||...|.. +..++.+-. ..+....+|....+. .+.....-..=+....-..-.+..-+++..+.
T Consensus 243 ~~Ll~------rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l 315 (700)
T KOG1156|consen 243 RRLLE------RNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSVLNGEELKEIVDKYLRPLL 315 (700)
T ss_pred HHHHh------hCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHHhCcchhHHHHHHHHHHHh
Confidence 99987 3466665554 445554333 333333666665543 11111111111111111223455667778888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccc
Q 006303 426 QAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSF 505 (651)
Q Consensus 426 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 505 (651)
+.|+++- +..+...|-. ..++- +++++...-.....++. .+.+
T Consensus 316 ~Kg~p~v---f~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~------------------------------~f~~ 358 (700)
T KOG1156|consen 316 SKGVPSV---FKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTG------------------------------MFNF 358 (700)
T ss_pred hcCCCch---hhhhHHHHhc---hhHhH-HHHHHHHHHHhhccccc------------------------------CCCc
Confidence 8886553 3333333322 11111 33333221110000000 0000
Q ss_pred cccc-ccCCCHHHHHHHHH--HH--hhcHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 506 DKRF-SFKPTTTTYNILMK--AC--CTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 506 ~~~~-~~~~~~~~~~~ll~--~~--~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.... .-.|....|....- .+ .++++.|....+..+.+ .|+.+ .|..-.+.+.+.|++++|..++++..+.+
T Consensus 359 ~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD- 435 (700)
T KOG1156|consen 359 LDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD- 435 (700)
T ss_pred ccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-
Confidence 0000 12566555554433 33 35889999999998874 56543 56666788999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--------HHHHHH--HHHHhcCCHHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLV--------TYITLL--RARSRYGSLHEVQ 638 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~--------~~~~l~--~~~~~~g~~~~a~ 638 (651)
.+|...=..-..-..++...++|.++.....+.|. +.. .|..+- .+|.+.|++.+|.
T Consensus 436 ~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~mqcmWf~~E~g~ay~r~~k~g~AL 502 (700)
T KOG1156|consen 436 TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEMQCMWFQLEDGEAYLRQNKLGLAL 502 (700)
T ss_pred chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHhhhHHHhHhhhHHHHHHHHHHHHH
Confidence 34554433566667889999999999999987774 332 233332 3666777776543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-06 Score=85.49 Aligned_cols=385 Identities=13% Similarity=0.097 Sum_probs=216.1
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
=+.-...+|++++|.....+++..+ |+ ...++.+-+.++...++|++|+.+.+.=... .- +...+
T Consensus 18 ~ln~~~~~~e~e~a~k~~~Kil~~~--pd------d~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~----~~~~~- 82 (652)
T KOG2376|consen 18 DLNRHGKNGEYEEAVKTANKILSIV--PD------DEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LV----INSFF- 82 (652)
T ss_pred HHHHhccchHHHHHHHHHHHHHhcC--CC------cHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hh----cchhh-
Confidence 3455567899999999999999885 44 3566778888899999999998655432210 11 11111
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-------------------
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV------------------- 217 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------------------- 217 (651)
+-++.+.| +.++.++|+..++ +..+.+......-.+.|.+.+++++|..+|..+
T Consensus 83 -fEKAYc~Y-rlnk~Dealk~~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~ 155 (652)
T KOG2376|consen 83 -FEKAYCEY-RLNKLDEALKTLK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAV 155 (652)
T ss_pred -HHHHHHHH-HcccHHHHHHHHh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 34444444 3477777777776 223334334455566677777777777776653
Q ss_pred ------------CCCC----ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC--------C-----CcH-HhHHHHHHHHH
Q 006303 218 ------------PRAD----ILFCNFVREFGKKRDLVSALRAYDASKKHLS--------S-----PNM-YICRTIIDVCG 267 (651)
Q Consensus 218 ------------~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------~-----~~~-~~~~~l~~~~~ 267 (651)
|..+ ..+++..-.+...|++.+|+++++...+.+. . -.. ..---|..++.
T Consensus 156 ~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ 235 (652)
T KOG2376|consen 156 AAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQ 235 (652)
T ss_pred HHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHH
Confidence 1111 2233445566778999999999998832211 0 011 12233455677
Q ss_pred hcCCHHHHHHHHHHHHhCCCcccH----HHHHHHHHhhc-CC-hH-HHHHHHHH------------H-------------
Q 006303 268 ICGDYMKSRAIYEDLRSQNVTLNI----YVFNSLMNVNA-HD-LK-FTLEVYKN------------M------------- 315 (651)
Q Consensus 268 ~~g~~~~a~~~~~~~~~~g~~~~~----~~~~~ll~~~~-~~-~~-~a~~~~~~------------m------------- 315 (651)
..|+.++|.++|....+.... |. ..-|.++.... .+ ++ ..+..++. +
T Consensus 236 ~~Gqt~ea~~iy~~~i~~~~~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~ 314 (652)
T KOG2376|consen 236 LQGQTAEASSIYVDIIKRNPA-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNA 314 (652)
T ss_pred HhcchHHHHHHHHHHHHhcCC-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 889999999999998887533 22 22233332211 00 00 00000000 0
Q ss_pred ------------HH--CCCCCC--HHhHHHHHHHHHhc--CCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcc
Q 006303 316 ------------QK--LGVMAD--MASYNILLKACCLA--GNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (651)
Q Consensus 316 ------------~~--~~~~~~--~~~~~~ll~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 376 (651)
.+ ...++. ...+.+++..+.+. .....+.+++....+ + .+- ...+.-.++......
T Consensus 315 lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~----~-~p~~s~~v~L~~aQl~is~ 389 (652)
T KOG2376|consen 315 LLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD----G-HPEKSKVVLLLRAQLKISQ 389 (652)
T ss_pred HHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc----c-CCchhHHHHHHHHHHHHhc
Confidence 00 001111 12222333322221 124445555544432 2 111 234455566677778
Q ss_pred cCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----HH
Q 006303 377 KWWQMALKVKE--------DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA--GCEPNSQCCNILL----QA 442 (651)
Q Consensus 377 ~~~~~a~~~~~--------~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~ll----~~ 442 (651)
|+++.|.+++. .+.+.+..| .+...+...+.+.++.+.|..++.+..+. .-.+.......++ ..
T Consensus 390 gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f 467 (652)
T KOG2376|consen 390 GNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEF 467 (652)
T ss_pred CCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHH
Confidence 88888888887 444443333 34445566666666666666666665542 0112222223332 23
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
-.+.|+.++|..+++++.+.+ .+|..+...++
T Consensus 468 ~lr~G~~~ea~s~leel~k~n------------------------------------------------~~d~~~l~~lV 499 (652)
T KOG2376|consen 468 KLRHGNEEEASSLLEELVKFN------------------------------------------------PNDTDLLVQLV 499 (652)
T ss_pred HHhcCchHHHHHHHHHHHHhC------------------------------------------------CchHHHHHHHH
Confidence 345688888888888877642 67788889999
Q ss_pred HHHhh-cHHHHHHHHHHH
Q 006303 523 KACCT-DYYRVKALMNEM 539 (651)
Q Consensus 523 ~~~~~-~~~~a~~~~~~~ 539 (651)
.+|+. +.+.|..+-.++
T Consensus 500 ~a~~~~d~eka~~l~k~L 517 (652)
T KOG2376|consen 500 TAYARLDPEKAESLSKKL 517 (652)
T ss_pred HHHHhcCHHHHHHHhhcC
Confidence 99987 888888776554
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-05 Score=79.35 Aligned_cols=302 Identities=12% Similarity=0.155 Sum_probs=179.1
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc------------------C------ChHHHHHHH
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA------------------H------DLKFTLEVY 312 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~------------------~------~~~~a~~~~ 312 (651)
..|..|.+.|.+.|.++.|.++|++....- .....|..+..+|+ + +++..+.-|
T Consensus 249 ~Lw~SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 249 FLWCSLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 468999999999999999999999987652 23333333333221 1 223334444
Q ss_pred HHHHHCC-----------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHH
Q 006303 313 KNMQKLG-----------VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 313 ~~m~~~~-----------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+ -+.+...|..-+.. ..|+..+-..+|.++.+.-......- -...|..+...|-.+|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 4443321 01233344433333 34667777777777765311110111 1235888999999999999
Q ss_pred HHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------------CCCHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPN---TITWSSLINACANAGLVEQAMHLFEEMLQAGC-----------------EPNSQCCNILL 440 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-----------------~~~~~~~~~ll 440 (651)
.|..+|++......+-- ..+|......-.+..+++.|+++++.....-- ..+...|...+
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~ 484 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA 484 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence 99999999887643321 24566666666677888899988887654211 11233455555
Q ss_pred HHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH-HHH
Q 006303 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT-TYN 519 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 519 (651)
+.-...|-++....+|+++....+. .|-.+ -|.
T Consensus 485 DleEs~gtfestk~vYdriidLria----------------------------------------------TPqii~NyA 518 (835)
T KOG2047|consen 485 DLEESLGTFESTKAVYDRIIDLRIA----------------------------------------------TPQIIINYA 518 (835)
T ss_pred HHHHHhccHHHHHHHHHHHHHHhcC----------------------------------------------CHHHHHHHH
Confidence 5555667778888888877765431 23221 122
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCCcHH-HHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHH--HHH
Q 006303 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHI-SWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAI--KVC 593 (651)
Q Consensus 520 ~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li--~~~ 593 (651)
.++.-. .-++++.+++++-+..-..|+.. .|+..+.-+.+ .-.++.|..+|++..+ |.+|...-+--|+ ..=
T Consensus 519 mfLEeh-~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lE 596 (835)
T KOG2047|consen 519 MFLEEH-KYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLE 596 (835)
T ss_pred HHHHhh-HHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHH
Confidence 222111 13567777777666553445544 67777766544 2368999999999998 5655433222121 222
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006303 594 VRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 594 ~~~g~~~~A~~~~~~m~ 610 (651)
-+.|....|++++++..
T Consensus 597 Ee~GLar~amsiyerat 613 (835)
T KOG2047|consen 597 EEHGLARHAMSIYERAT 613 (835)
T ss_pred HHhhHHHHHHHHHHHHH
Confidence 33577777888887763
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=6.3e-07 Score=90.30 Aligned_cols=67 Identities=15% Similarity=0.163 Sum_probs=47.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
...+...|++++|++.++.-... +.............+.+.|+.++|..+|..+.+++ |+...|...
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~ 77 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRG 77 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH
Confidence 45567789999999988775543 32334556677788888999999999999998884 344444333
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=8.8e-09 Score=91.93 Aligned_cols=223 Identities=12% Similarity=-0.019 Sum_probs=157.4
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
+.+...|.+.|.+.+|...|+..++.-..|+ +|-.|.+ .|.+-...+.|+.++.+-+.. .|.+++....
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~d------TfllLsk---vY~ridQP~~AL~~~~~gld~--fP~~VT~l~g 295 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPD------TFLLLSK---VYQRIDQPERALLVIGEGLDS--FPFDVTYLLG 295 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCchh------HHHHHHH---HHHHhccHHHHHHHHhhhhhc--CCchhhhhhh
Confidence 3456667788888888888887776433332 3333444 455567778888888776653 3777777777
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCH
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (651)
+.+.+...++.++|.++++.. +.+.++...+...|.-.++.+.|++.|..+++.|+ -+...|+.+.-+|.-.+++
T Consensus 296 ~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 296 QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQI 374 (478)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcch
Confidence 777777778888888777664 44456666777788888999999999999999887 5677888888888888999
Q ss_pred HHHHHHHHHHHhCCCcccH--HHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 273 MKSRAIYEDLRSQNVTLNI--YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYG 348 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~--~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 348 (651)
+-++..|++....--.|+. ..|..+-.. -.|++..|.+.|+-....+ ..+...+|.|.-.-.+.|++++|..++.
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 9999888888765444432 233333222 3367777777777776654 2356778888777778888888888888
Q ss_pred HHHH
Q 006303 349 EVKH 352 (651)
Q Consensus 349 ~~~~ 352 (651)
....
T Consensus 454 ~A~s 457 (478)
T KOG1129|consen 454 AAKS 457 (478)
T ss_pred Hhhh
Confidence 7765
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=4e-08 Score=87.83 Aligned_cols=225 Identities=14% Similarity=0.046 Sum_probs=120.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
-+.++|.+.|.+.+|.+.++...+ ..|-+.||..|-+.|.+..+.+.|+.++.+-++. ++-|+.....+.+.+
T Consensus 228 Q~gkCylrLgm~r~AekqlqssL~------q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ 300 (478)
T KOG1129|consen 228 QMGKCYLRLGMPRRAEKQLQSSLT------QFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH 300 (478)
T ss_pred HHHHHHHHhcChhhhHHHHHHHhh------cCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence 355566666666666666665554 3455566666666666666666666666665554 122333333444555
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
...++.++|.++++...+.. +.++.....+...|.-.++.+-|+..|+.+.+.++
T Consensus 301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~------------------------ 355 (478)
T KOG1129|consen 301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA------------------------ 355 (478)
T ss_pred HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC------------------------
Confidence 55666666666666666553 34444455555555556666666666666655442
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHH--HHhhcHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhcCCCh
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCTDYYRVKALMNEMRTVGLSPN--HISWTILIDACGGSGNV 564 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~~a~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~ 564 (651)
-+...|+.+-- .|++.++-++--|......--.|+ ..+|-.+.......|++
T Consensus 356 ------------------------~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~ 411 (478)
T KOG1129|consen 356 ------------------------QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDF 411 (478)
T ss_pred ------------------------CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccch
Confidence 11222222221 123455555555555544322222 33455555555555666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..|.+.|.-....+- -+...+|.|.-.-.+.|++++|..+++...
T Consensus 412 nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 412 NLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 666666665554321 234556655555566666666666666554
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.02 E-value=1.6e-07 Score=80.22 Aligned_cols=197 Identities=13% Similarity=-0.006 Sum_probs=143.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..+...|.-.|...|++..|..-++..++. +|+.+.. +..++..|-+.|+.+.|.+.|++... +.|+.-.
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a------~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~Gd 104 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLA------HLVRAHYYQKLGENDLADESYRKALS--LAPNNGD 104 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHH------HHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccc
Confidence 677888999999999999999999999999 8875443 33445558899999999999999998 5565432
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
...-|.. -+...|++++|...|++.......+.....+..++-+..+.|+++.|..++++. |..+.....
T Consensus 105 VLNNYG~------FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~ 178 (250)
T COG3063 105 VLNNYGA------FLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLE 178 (250)
T ss_pred hhhhhhH------HHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHH
Confidence 2222222 333478999999999998887666666677777777777777777777776653 555566677
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+.....+.|++..|...++.....+. ++..+.-..|+.-.+.|+.+.+.+.=..+.+
T Consensus 179 ~a~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 179 LARLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 77777777777777777777776655 6666666666766677776666555444443
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.4e-07 Score=87.28 Aligned_cols=116 Identities=11% Similarity=-0.007 Sum_probs=59.8
Q ss_pred cchHHHHHHHHHHHHhcCC-Cc-cccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRL-PV-KELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.+..+.++..+.+++.... .+ .....+..++..+...|+.++|...|... |.+..+|+.+...+...|++++|+
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3566777888877775431 11 11233444555555555555555444432 344455555555555555555555
Q ss_pred HHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 242 RAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
..|+...+ +.| +..+|..+..++...|++++|++.|+...+.
T Consensus 119 ~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~ 161 (296)
T PRK11189 119 EAFDSVLE--LDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD 161 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 55555554 223 2344444555555555555555555555443
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.5e-06 Score=76.28 Aligned_cols=329 Identities=12% Similarity=0.081 Sum_probs=190.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
..--..+...+..+|++.+|+..|....+. +|+.|.... .-+..|...|+-..|+.=|.+.++ +.|+-
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aif------rRaT~yLAmGksk~al~Dl~rVle--lKpDF-- 105 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIF------RRATVYLAMGKSKAALQDLSRVLE--LKPDF-- 105 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHH------HHHHHHhhhcCCccchhhHHHHHh--cCccH--
Confidence 444556778888889999999999988877 888664433 334458888999999888888887 56643
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
+..-+.-...+.++|.+++|..=|+.++... |..- ...+|..-+..+.. .......+..
T Consensus 106 ----~~ARiQRg~vllK~Gele~A~~DF~~vl~~~--~s~~--------------~~~eaqskl~~~~e-~~~l~~ql~s 164 (504)
T KOG0624|consen 106 ----MAARIQRGVVLLKQGELEQAEADFDQVLQHE--PSNG--------------LVLEAQSKLALIQE-HWVLVQQLKS 164 (504)
T ss_pred ----HHHHHHhchhhhhcccHHHHHHHHHHHHhcC--CCcc--------------hhHHHHHHHHhHHH-HHHHHHHHHH
Confidence 2222333334455899999999998888754 2111 11111111000000 0122234455
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh-cCChHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN-AHDLKFT 308 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~-~~~~~~a 308 (651)
+.-.|+...|+.....+++ +.| |...+..-..+|...|+...|+.-+....+..-..+...|..---.| .|+.+.+
T Consensus 165 ~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~s 242 (504)
T KOG0624|consen 165 ASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENS 242 (504)
T ss_pred HhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHH
Confidence 6667899999999999888 445 77788888888999999998888777665543222222222211122 2666666
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+...++..+. .||...+-.. | ..+.+..+.++.|.+ ..+.++|.+++...+.
T Consensus 243 L~~iRECLKl--dpdHK~Cf~~---Y---KklkKv~K~les~e~--------------------~ie~~~~t~cle~ge~ 294 (504)
T KOG0624|consen 243 LKEIRECLKL--DPDHKLCFPF---Y---KKLKKVVKSLESAEQ--------------------AIEEKHWTECLEAGEK 294 (504)
T ss_pred HHHHHHHHcc--CcchhhHHHH---H---HHHHHHHHHHHHHHH--------------------HHhhhhHHHHHHHHHH
Confidence 6666666654 3443221110 1 111222222222222 2344556666666666
Q ss_pred HHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 389 MLSAGVTPNTI---TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 389 m~~~~~~~~~~---~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+........ .+..+-.++...|++.+|++...++.+.. +.|..++.--..+|.-..+++.|+.-|+...+.+
T Consensus 295 vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 295 VLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 55543221111 23344455556666777777777666542 2335566666667766677777777776665443
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.97 E-value=8e-07 Score=76.07 Aligned_cols=91 Identities=12% Similarity=0.017 Sum_probs=44.9
Q ss_pred HHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 368 TIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.|.-.|...|+...|..-+++.++... -+..+|..+...|.+.|+.+.|.+.|++..+.. +.+..+.|....-+|..|
T Consensus 40 qLal~YL~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg 117 (250)
T COG3063 40 QLALGYLQQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQG 117 (250)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCC
Confidence 344455555555555555555555431 134455555555555555555555555555443 223334444444445555
Q ss_pred ChhHHHHHHHHhh
Q 006303 448 QFDRAFRLFRSWT 460 (651)
Q Consensus 448 ~~~~a~~~~~~~~ 460 (651)
.+++|...|+...
T Consensus 118 ~~~eA~q~F~~Al 130 (250)
T COG3063 118 RPEEAMQQFERAL 130 (250)
T ss_pred ChHHHHHHHHHHH
Confidence 5555555555443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.5e-06 Score=86.34 Aligned_cols=206 Identities=12% Similarity=-0.032 Sum_probs=122.1
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|+. ...+..+...+...|+.+++...+....+.. |...+ ..+........+...|++++|...+++..+. .|
T Consensus 3 p~~-~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~--~~~~~---~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P 74 (355)
T cd05804 3 PDF-ALGHAAAALLLLLGGERPAAAAKAAAAAQAL--AARAT---ERERAHVEALSAWIAGDLPKALALLEQLLDD--YP 74 (355)
T ss_pred Ccc-HHHHHHHHHHHHhcCCcchHHHHHHHHHHHh--ccCCC---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CC
Confidence 444 5566666677777788888877777776652 21111 1222222344567899999999999998874 45
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCc
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~ 222 (651)
+.. ..+..-..........+....+.+.++. .....|........++..+...|++++|.+.++.. |.+..
T Consensus 75 ~~~---~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~ 149 (355)
T cd05804 75 RDL---LALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW 149 (355)
T ss_pred CcH---HHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH
Confidence 432 1111000000111113445555555544 11222333344445556777788888887776553 55666
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcH--HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNM--YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.+..+...|...|++++|...+++....... ++. ..|..+...+...|++++|..+|++....
T Consensus 150 ~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 150 AVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 7777888888888888888888877764321 222 23446677778888888888888877543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.96 E-value=8.5e-06 Score=81.16 Aligned_cols=195 Identities=13% Similarity=0.039 Sum_probs=97.5
Q ss_pred ccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHh--------------------cCChhHHHhhhhH
Q 006303 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVS--------------------EGNVSKFASMLSL 113 (651)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~p~~~~~~~~~ 113 (651)
.++++|++.+...|+. ...|..+...-...|++--|.+.|..+-.- |.+...|
T Consensus 461 ~ra~afles~~~~~da-~amw~~laelale~~nl~iaercfaai~dvak~r~lhd~~eiadeas~~~ggdgt~f------ 533 (1636)
T KOG3616|consen 461 DRATAFLESLEMGPDA-EAMWIRLAELALEAGNLFIAERCFAAIGDVAKARFLHDILEIADEASIEIGGDGTDF------ 533 (1636)
T ss_pred HHHHHHHHhhccCccH-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhCCCCchH------
Confidence 3456688888888887 777888777777777776666666433211 1111111
Q ss_pred HHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccch
Q 006303 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (651)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 193 (651)
+..-.....-..++++|..+|-+-.. .-.+...|....+|++|+.+-+.. + .|.-...
T Consensus 534 --ykvra~lail~kkfk~ae~ifleqn~----------------te~aigmy~~lhkwde~i~lae~~---~-~p~~ekl 591 (1636)
T KOG3616|consen 534 --YKVRAMLAILEKKFKEAEMIFLEQNA----------------TEEAIGMYQELHKWDEAIALAEAK---G-HPALEKL 591 (1636)
T ss_pred --HHHHHHHHHHHhhhhHHHHHHHhccc----------------HHHHHHHHHHHHhHHHHHHHHHhc---C-ChHHHHH
Confidence 00001111223344444444321110 001111222345666666654432 1 1222222
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
-....+++...|+-+.|-++- .+..--.+.++.|.+.|....|.+....=.+ +..|......+..++.+..-++
T Consensus 592 k~sy~q~l~dt~qd~ka~elk----~sdgd~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elyd 665 (1636)
T KOG3616|consen 592 KRSYLQALMDTGQDEKAAELK----ESDGDGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYD 665 (1636)
T ss_pred HHHHHHHHHhcCchhhhhhhc----cccCccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHH
Confidence 333445555666666555442 2223344567788888888877765432111 2245555666666666666666
Q ss_pred HHHHHHHHHH
Q 006303 274 KSRAIYEDLR 283 (651)
Q Consensus 274 ~a~~~~~~~~ 283 (651)
+|-++|+++.
T Consensus 666 kagdlfeki~ 675 (1636)
T KOG3616|consen 666 KAGDLFEKIH 675 (1636)
T ss_pred hhhhHHHHhh
Confidence 6666666554
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.1e-05 Score=78.37 Aligned_cols=274 Identities=12% Similarity=0.059 Sum_probs=158.2
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHH----------HhcCC------
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVL----------EEFRL------ 186 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~----------~~~~~------ 186 (651)
|-.+|.|++|.++-+.--+ +. +-+++-+.+..+...++.+.|++.|++. +....
T Consensus 836 yQs~g~w~eA~eiAE~~DR--iH--------Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Y 905 (1416)
T KOG3617|consen 836 YQSQGMWSEAFEIAETKDR--IH--------LRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQY 905 (1416)
T ss_pred HHhcccHHHHHHHHhhccc--ee--------hhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHH
Confidence 5556677776666543222 11 1122222222334468888888888763 21110
Q ss_pred --CccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 187 --PVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 187 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
...+...|..-++.+-..|+.+.|+.+|..+ .-|.+++...|-+|+.++|-++-++- .|..+...|.+
T Consensus 906 v~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A----~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 906 VRRKRDESLYSWWGQYLESVGEMDAALSFYSSA----KDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred HHhccchHHHHHHHHHHhcccchHHHHHHHHHh----hhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 1223445555666677788999999888765 45778888888899999998887653 46677888899
Q ss_pred HHHhcCCHHHHHHHHHHHHhCC--------CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006303 265 VCGICGDYMKSRAIYEDLRSQN--------VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (651)
Q Consensus 265 ~~~~~g~~~~a~~~~~~~~~~g--------~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 336 (651)
.|-..|++.+|...|.+..... -..+...+|..+.....+.-.|-++|++.-. . ...-+..|-+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~---~-----~~~AVmLYHk 1047 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGG---Y-----AHKAVMLYHK 1047 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcch---h-----hhHHHHHHHh
Confidence 9999999999999988653210 1123334444333333345555556655421 1 1123345667
Q ss_pred cCCHHHHHHHHHHHHH------hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH----------CCC------
Q 006303 337 AGNTVLAQEIYGEVKH------LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----------AGV------ 394 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----------~~~------ 394 (651)
.|.+.+|.++--.-.+ +.++-....|+...+.-...++...+++.|..++-...+ .|+
T Consensus 1048 AGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~ 1127 (1416)
T KOG3617|consen 1048 AGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEF 1127 (1416)
T ss_pred hcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHH
Confidence 7777666654321111 000100123555666666666677777766665543321 111
Q ss_pred ----------CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 395 ----------TPNTI----TWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 395 ----------~~~~~----~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
.|+.. ....+...|.++|.+..|.+-|.+.
T Consensus 1128 aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1128 AELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 22332 3456667888899988887777654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.95 E-value=9.8e-06 Score=83.70 Aligned_cols=174 Identities=10% Similarity=0.001 Sum_probs=99.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.++++.++.- ...|..|+.-|....+...|...|+.+.+. +|+. ..+-..+...|.+...++.|..+.-.
T Consensus 481 li~alrld~~~-apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datd------aeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 481 LIRALRLDVSL-APAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATD------AEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred HHHHHhcccch-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--Cchh------hhhHHHHHHHhhccccHHHHHHHHHH
Confidence 56666666666 666777777777666667777777766665 5542 22233456667777777777766333
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
.-+. .|-.. ...+ .......+...++...|+..|+..+. ..|.+...|..++.+|.+.|.+..|.+.|.++
T Consensus 552 ~~qk--a~a~~---~k~n-W~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs 623 (1238)
T KOG1127|consen 552 AAQK--APAFA---CKEN-WVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKAS 623 (1238)
T ss_pred Hhhh--chHHH---HHhh-hhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhH
Confidence 2221 11000 0000 11111233445666777777776655 34777777777777777777777777777554
Q ss_pred ---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 218 ---PRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 218 ---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
|.+.....-...+-+..|++.+|+..+..+..
T Consensus 624 ~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 624 LLRPLSKYGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred hcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 22223333344555666777777777766554
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.9e-06 Score=78.74 Aligned_cols=284 Identities=11% Similarity=-0.010 Sum_probs=156.2
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (651)
.-.++-..|.+++-.+.....-|. +.+.+..++..+...|+.++|+..|++... +.|.....-..|..++.
T Consensus 207 ~~~~~hs~a~~t~l~le~~~~lr~------NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~- 277 (564)
T KOG1174|consen 207 MFNFKHSDASQTFLMLHDNTTLRC------NEHLMMALGKCLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLG- 277 (564)
T ss_pred HHhcccchhhhHHHHHHhhccCCc------cHHHHHHHhhhhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHH-
Confidence 335666667776666655555555 344455667778888888888888888776 55655444344444333
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDL 237 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~ 237 (651)
+.|++++...+...+.... ......|..-+...-...++..|+.+.++. +++...+..-...+...++.
T Consensus 278 -----~eg~~e~~~~L~~~Lf~~~--~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 278 -----QEGGCEQDSALMDYLFAKV--KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH 350 (564)
T ss_pred -----hccCHhhHHHHHHHHHhhh--hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch
Confidence 3677777777666665422 111222333333344455666666554442 33445555555666677777
Q ss_pred HHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-Hhhc---CChHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVNA---HDLKFTLEVY 312 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~~---~~~~~a~~~~ 312 (651)
++|.=.|..... +.| +...|.-|+..|...|++.+|.-+-+...+. ++.+..+...+- .++. .--++|.+++
T Consensus 351 ~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ 427 (564)
T KOG1174|consen 351 TQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFA 427 (564)
T ss_pred HHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence 777777776655 344 5667777777777777777766555443322 011222222110 1111 1234555555
Q ss_pred HHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 313 KNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 313 ~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
+.-... .|+ ....+.+...+...|..++++.+++.... ..||....+.|...+...+.+++|+..|...++
T Consensus 428 ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~------~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 428 EKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI------IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred Hhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh------hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 554432 233 23444455555555666666666655554 345555556666666666666666665555554
Q ss_pred C
Q 006303 392 A 392 (651)
Q Consensus 392 ~ 392 (651)
.
T Consensus 500 ~ 500 (564)
T KOG1174|consen 500 Q 500 (564)
T ss_pred c
Confidence 4
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.5e-06 Score=82.80 Aligned_cols=146 Identities=13% Similarity=0.005 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHCC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 306 KFTLEVYKNMQKLG-VMA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 306 ~~a~~~~~~m~~~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
+.++.-+.++.... ..| ....|..+...+...|+.++|...|++..+. .+.+...|+.+...+...|++++|
T Consensus 43 e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l-----~P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 43 EVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL-----RPDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred HHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 44445555554321 112 2345667777788888888888888888763 234567788888888888888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
...|++..+.... +..+|..+..++...|++++|.+.|++..+.. |+..........+...++.++|...|.+.
T Consensus 118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~ 191 (296)
T PRK11189 118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence 8888888775422 46677777778888888888888888887763 33221122222233456777777777553
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.6e-05 Score=76.94 Aligned_cols=374 Identities=11% Similarity=0.017 Sum_probs=247.8
Q ss_pred cchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 69 SRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 69 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
+.+..|..|.-++...|++..+.+.||+.... .+.. .+.+......+...|.-..|+.+++.-....-.|+.
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-----~~~~---~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-----SFGE---HERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-----hhhh---HHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 35778888889999999999999999987544 2222 444456677788999999999999987753322433
Q ss_pred cccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC-CCcc--ccchHHHHHHHHhc----CCChH-------HHHHHh
Q 006303 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR-LPVK--ELDEEFRIVQLCVN----KPDVN-------LAIRYA 214 (651)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~--~~~~~~~l~~~~~~----~~~~~-------~A~~~~ 214 (651)
. ..+-+..+. ...+.+.+++++.+..+++... .... ....+..++-+|.. ..... ++++.+
T Consensus 393 ~---s~~Lmaskl--c~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqal 467 (799)
T KOG4162|consen 393 I---SVLLMASKL--CIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQAL 467 (799)
T ss_pred c---hHHHHHHHH--HHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHH
Confidence 2 122222222 2334678888888877776521 1111 11223333433332 22222 233333
Q ss_pred hhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC-CC--
Q 006303 215 CIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ-NV-- 287 (651)
Q Consensus 215 ~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~-- 287 (651)
+.. |.|+.+...+.--|+-+++++.|.+...+..+-+..-+...|..|.-.+...+++.+|+.+.+..... |.
T Consensus 468 e~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~ 547 (799)
T KOG4162|consen 468 EEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNH 547 (799)
T ss_pred HHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhh
Confidence 332 56667777788889999999999999999998765568889999999999999999999998876543 21
Q ss_pred ----------------cccHHHHHHHHHhh-------------------cC------ChHHHHHHHHHH--------HHC
Q 006303 288 ----------------TLNIYVFNSLMNVN-------------------AH------DLKFTLEVYKNM--------QKL 318 (651)
Q Consensus 288 ----------------~~~~~~~~~ll~~~-------------------~~------~~~~a~~~~~~m--------~~~ 318 (651)
.--..|...++... +| +..++......+ ...
T Consensus 548 ~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~ 627 (799)
T KOG4162|consen 548 VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSA 627 (799)
T ss_pred hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhc
Confidence 00011222222211 00 111111111111 111
Q ss_pred C---------CCCCH--------HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 319 G---------VMADM--------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 319 ~---------~~~~~--------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
| +.|.. ..|......+.+.+..++|...+.+...+ .+.....|......+...|.+++
T Consensus 628 ~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-----~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 628 GSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-----DPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred ccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-----chhhHHHHHHhhHHHHHHHhhHH
Confidence 1 11111 12334455667778888888777777654 45566677777788889999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH--LFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
|...|......+. -+....+.+..++.+.|+...|.. ++.++.+.+ +.+...|-.+...+.+.|+.+.|.+.|...
T Consensus 703 A~~af~~Al~ldP-~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa 780 (799)
T KOG4162|consen 703 AKEAFLVALALDP-DHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAA 780 (799)
T ss_pred HHHHHHHHHhcCC-CCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence 9999999887642 256788899999999999888888 999999887 678889999999999999999999999876
Q ss_pred hhc
Q 006303 460 TLS 462 (651)
Q Consensus 460 ~~~ 462 (651)
.+.
T Consensus 781 ~qL 783 (799)
T KOG4162|consen 781 LQL 783 (799)
T ss_pred Hhh
Confidence 654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.5e-05 Score=78.02 Aligned_cols=248 Identities=14% Similarity=0.120 Sum_probs=147.0
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---------CCCcccc
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---------GVAPLEL 149 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---------~~~~~~~ 149 (651)
+.|...|+.+.|-.-...+... . +..++++-+.+..+.+-|.-.+-.|... .-.|+.
T Consensus 736 SfyvtiG~MD~AfksI~~IkS~----~---------vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e- 801 (1416)
T KOG3617|consen 736 SFYVTIGSMDAAFKSIQFIKSD----S---------VWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEE- 801 (1416)
T ss_pred eEEEEeccHHHHHHHHHHHhhh----H---------HHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcc-
Confidence 4456667777776655544322 1 1234444555555555554444444321 011111
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC--CCccHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR--ADILFCNF 227 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~l 227 (651)
.-.+.+....+.|..++|..+|.+-.. +..+-+.|...|.+++|.++.+.-.+ -..+|...
T Consensus 802 -------~eakvAvLAieLgMlEeA~~lYr~ckR----------~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~y 864 (1416)
T KOG3617|consen 802 -------DEAKVAVLAIELGMLEEALILYRQCKR----------YDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNY 864 (1416)
T ss_pred -------hhhHHHHHHHHHhhHHHHHHHHHHHHH----------HHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHH
Confidence 011222223346889999999887544 44566778888999999888655322 12667777
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHH
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (651)
...+..++|.+.|++.|++... |-..++..|.. +........+.+. .+....|-.----..|+.+.
T Consensus 865 A~~Lear~Di~~AleyyEK~~~----hafev~rmL~e------~p~~~e~Yv~~~~----d~~L~~WWgqYlES~Gemda 930 (1416)
T KOG3617|consen 865 AKYLEARRDIEAALEYYEKAGV----HAFEVFRMLKE------YPKQIEQYVRRKR----DESLYSWWGQYLESVGEMDA 930 (1416)
T ss_pred HHHHHhhccHHHHHHHHHhcCC----hHHHHHHHHHh------ChHHHHHHHHhcc----chHHHHHHHHHHhcccchHH
Confidence 8888888889999988887432 22223332221 2222223333332 22333333222223477888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|+.+|..... |-.+++..|-.|+.++|-++-++- -|......+.+.|-..|++.+|...|-
T Consensus 931 Al~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es----------gd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 931 ALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES----------GDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred HHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc----------ccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 8888877654 556777788888888888876642 366677778888888888888888887
Q ss_pred HHH
Q 006303 388 DML 390 (651)
Q Consensus 388 ~m~ 390 (651)
+..
T Consensus 992 rAq 994 (1416)
T KOG3617|consen 992 RAQ 994 (1416)
T ss_pred HHH
Confidence 654
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.85 E-value=9.3e-06 Score=72.15 Aligned_cols=26 Identities=12% Similarity=0.006 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
..||..++-.||+..-++.|-.++.+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 45666666666666666666665544
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=1.2e-05 Score=71.55 Aligned_cols=316 Identities=11% Similarity=0.054 Sum_probs=202.5
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.+.+.+..+.+..++.+|++++....+. .|. ....++.++-.|-+..++..|-+.++++-. ..|...
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er--~p~------~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~q--l~P~~~--- 78 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELER--SPR------SRAGLSLLGYCYYRLQEFALAAECYEQLGQ--LHPELE--- 78 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhc--Ccc------chHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hChHHH---
Confidence 3566677778889999999999988877 553 244556667778899999999999999987 455332
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHH----HHHhcCCChHHHHHHhhhCCCC--CccHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIV----QLCVNKPDVNLAIRYACIVPRA--DILFCN 226 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~--~~~~~~ 226 (651)
-+..+ .+..+-+.+.+.+|+.+...|... .......+ ...-..+++..+..+.++.|.. ..+.+.
T Consensus 79 -qYrlY--~AQSLY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in 149 (459)
T KOG4340|consen 79 -QYRLY--QAQSLYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQIN 149 (459)
T ss_pred -HHHHH--HHHHHHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhcc
Confidence 22222 112333468899999998887542 12222222 1233578888888889988853 355556
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc---C
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA---H 303 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~---~ 303 (651)
..-...+.|+++.|.+-|+...+.+.-....+||.-+..| +.|+++.|++...++.++|++.... ++.-+..-. +
T Consensus 150 ~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPE-lgIGm~tegiDvr 227 (459)
T KOG4340|consen 150 LGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPE-LGIGMTTEGIDVR 227 (459)
T ss_pred chheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCc-cCccceeccCchh
Confidence 6666778999999999999998865545677888777655 5689999999999999988752211 111000000 0
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
....... |..++ -...+|.-...+.+.|+++.|.+.+-.|.- +.....|+.|...+.-.= -.+++.+..
T Consensus 228 svgNt~~----lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPP---RaE~elDPvTLHN~Al~n-~~~~p~~g~ 296 (459)
T KOG4340|consen 228 SVGNTLV----LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPP---RAEEELDPVTLHNQALMN-MDARPTEGF 296 (459)
T ss_pred cccchHH----HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCC---cccccCCchhhhHHHHhc-ccCCccccH
Confidence 0000000 00100 123445555566778888888888877753 222345666665543222 234455555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
+-+..++.... -...||..++-.||+..-++.|-.++.+-
T Consensus 297 ~KLqFLL~~nP-fP~ETFANlLllyCKNeyf~lAADvLAEn 336 (459)
T KOG4340|consen 297 EKLQFLLQQNP-FPPETFANLLLLYCKNEYFDLAADVLAEN 336 (459)
T ss_pred HHHHHHHhcCC-CChHHHHHHHHHHhhhHHHhHHHHHHhhC
Confidence 55666665543 35678888999999988888888887654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00027 Score=71.63 Aligned_cols=411 Identities=10% Similarity=0.050 Sum_probs=242.6
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
..+..+|..|.-++.+.|+++.+.+.|++.... .......|+.+.-.|...|.-..|..+++........|+..+-..+
T Consensus 320 qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lm 398 (799)
T KOG4162|consen 320 QNDAAIFDHLTFALSRCGQFEVLAEQFEQALPF-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLM 398 (799)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHH
Confidence 345577888888889999999999999987753 2245667888888899999988999998876655434443333333
Q ss_pred HH-hhcC---ChHHHHHHHHHHHH--CC--CCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhhcCC
Q 006303 298 MN-VNAH---DLKFTLEVYKNMQK--LG--VMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 298 l~-~~~~---~~~~a~~~~~~m~~--~~--~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~ 358 (651)
.. .|.+ ..++++.+-.+... .+ -...+..|..+.-+|... ....++.+.+++..+..
T Consensus 399 asklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d---- 474 (799)
T KOG4162|consen 399 ASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD---- 474 (799)
T ss_pred HHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC----
Confidence 33 3433 44454444444443 11 122345555555555432 12345667777776531
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
+.|....-.+.--|+..++++.|++..++..+.+-.-+...|..+.-.+...+++.+|+.+.+.....- ..|......
T Consensus 475 -~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~ 552 (799)
T KOG4162|consen 475 -PTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDG 552 (799)
T ss_pred -CCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchh
Confidence 223333334445577888999999999999988667788999999999999999999999988776531 000000000
Q ss_pred HHHHHHhcCChhHHHHHHHHhhh-----------------ccccccc----cc--ccCCchhhhhhhhhhccccccCCCC
Q 006303 439 LLQACVEACQFDRAFRLFRSWTL-----------------SKTQVAL----GE--DYDGNTDRISNMEHKDKQSITNTPN 495 (651)
Q Consensus 439 ll~~~~~~g~~~~a~~~~~~~~~-----------------~~~~~~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (651)
=+..-...++.++++.....+.. .+.+... .. +.......+.........+
T Consensus 553 ~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~------ 626 (799)
T KOG4162|consen 553 KIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKS------ 626 (799)
T ss_pred hhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhh------
Confidence 01111123344444333322221 0000000 00 0000000000000000000
Q ss_pred ccCCCcccccccccccCCCHH-HHHHH-------HHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChH
Q 006303 496 FVPNSHYSSFDKRFSFKPTTT-TYNIL-------MKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVE 565 (651)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~-~~~~l-------l~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~ 565 (651)
......+..+-+.|... +|..+ ...+. ++.+++..-+.+.... ..-....|......+...|...
T Consensus 627 ----~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~ 701 (799)
T KOG4162|consen 627 ----AGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLE 701 (799)
T ss_pred ----cccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhH
Confidence 00000122222233221 22211 12222 3456666555555442 1224556666677778889999
Q ss_pred HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 566 GALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFS--LFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 566 ~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+|.+.|...... .|+ .....++...+.+.|+..-|.. ++.++.+.+ +-+...|..+...+...|+.+.|.+++.
T Consensus 702 EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~ 778 (799)
T KOG4162|consen 702 EAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQ 778 (799)
T ss_pred HHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHH
Confidence 999999988874 555 5577889999999998887777 999998765 5678899999999999999999999887
Q ss_pred HHHHHHh
Q 006303 643 VYQDMWK 649 (651)
Q Consensus 643 ~~~~m~~ 649 (651)
.--++..
T Consensus 779 aa~qLe~ 785 (799)
T KOG4162|consen 779 AALQLEE 785 (799)
T ss_pred HHHhhcc
Confidence 6655543
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-05 Score=76.21 Aligned_cols=198 Identities=14% Similarity=0.036 Sum_probs=116.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCC-CCcHH-hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH-HH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLS-SPNMY-ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS-LM 298 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~-ll 298 (651)
..+..+...+...|+.+.+.+.+....+... .++.. ........+...|++++|.+.+++..+..+. +...+.. +.
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~~~~ 85 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR-DLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHhHH
Confidence 3444455555555666666555555444222 11211 1222233345667777777777776665322 2222221 11
Q ss_pred Hh----hcCChHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 299 NV----NAHDLKFTLEVYKNMQKLGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 299 ~~----~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
.. ..+....+.+.+.. .....|+ ......+...+...|++++|.+.+++..+. .+.+...+..+...|
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~p~~~~~~~~la~i~ 158 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL-----NPDDAWAVHAVAHVL 158 (355)
T ss_pred HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHH
Confidence 11 12344444444443 1112233 344455667788889999999999988874 234456778888888
Q ss_pred HcccCHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 374 ADAKWWQMALKVKEDMLSAGV-TPNT--ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
...|++++|...+++...... .++. ..|..+...+...|++++|..++++....
T Consensus 159 ~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~ 215 (355)
T cd05804 159 EMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP 215 (355)
T ss_pred HHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 899999999999988876532 1222 34556778888899999999999887543
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.78 E-value=0.0001 Score=73.81 Aligned_cols=217 Identities=12% Similarity=0.143 Sum_probs=141.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...|+++.|+..|-+... ++++.........|.+|+.+++.+..... ..-++..+...|.
T Consensus 716 l~~~~q~daainhfiea~~----------------~~kaieaai~akew~kai~ildniqdqk~---~s~yy~~iadhya 776 (1636)
T KOG3616|consen 716 LEQIGQLDAAINHFIEANC----------------LIKAIEAAIGAKEWKKAISILDNIQDQKT---ASGYYGEIADHYA 776 (1636)
T ss_pred HHHHHhHHHHHHHHHHhhh----------------HHHHHHHHhhhhhhhhhHhHHHHhhhhcc---ccccchHHHHHhc
Confidence 4456666666655543332 34444455557899999999998876442 2345677888999
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..|+++.|+++|... ..++..+.+|.+.|++++|.++-.+... .+.....|-+-..-+-+.|++.+|.++|-..
T Consensus 777 n~~dfe~ae~lf~e~----~~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti 850 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA----DLFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITI 850 (1636)
T ss_pred cchhHHHHHHHHHhc----chhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEc
Confidence 999999999998764 4567788999999999999998877643 4445566766667778889999998887543
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (651)
- .|+.. .-|.-..|..++.+++..+-... .-..|...+..-+-..|++..|...|-+...
T Consensus 851 ~----~p~~a---iqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------- 910 (1636)
T KOG3616|consen 851 G----EPDKA---IQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------- 910 (1636)
T ss_pred c----CchHH---HHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhhh----------
Confidence 2 12211 01111123444444444433211 1134556667777788888888887755432
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|..-+++|-..+.|++|.++-+
T Consensus 911 ---~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 911 ---FKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred ---HHHHHHHhhhhhhHHHHHHHHh
Confidence 4556667777777777766543
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=4.1e-06 Score=75.85 Aligned_cols=299 Identities=12% Similarity=0.064 Sum_probs=177.9
Q ss_pred cccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHH
Q 006303 53 HSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCV 132 (651)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a 132 (651)
.+..+.+..++..+|++ -.++-.-+..|..-|+-.-|+.-+++.++. .|+-+...+-. ...+.++|++++|
T Consensus 55 sDALt~yHaAve~dp~~-Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR------g~vllK~Gele~A 125 (504)
T KOG0624|consen 55 SDALTHYHAAVEGDPNN-YQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR------GVVLLKQGELEQA 125 (504)
T ss_pred HHHHHHHHHHHcCCchh-HHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh------chhhhhcccHHHH
Confidence 34445677888888888 666666778888899999999999999998 78755444333 3448899999999
Q ss_pred HHHHHHHHHcCCCccccccchhhHHH---------HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc
Q 006303 133 VGVLKKLNELGVAPLELFDGSGFKLL---------KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN 203 (651)
Q Consensus 133 ~~~l~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 203 (651)
+.=|+..+.. .|+.-......+-+ ..-...+.-.|+...|++.+..+++ +.|-+...+..-.++|..
T Consensus 126 ~~DF~~vl~~--~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~ 201 (504)
T KOG0624|consen 126 EADFDQVLQH--EPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIA 201 (504)
T ss_pred HHHHHHHHhc--CCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHh
Confidence 9999999985 34322222111111 1111223335788888888888877 446666666677778888
Q ss_pred CCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 204 KPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIY 279 (651)
Q Consensus 204 ~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 279 (651)
.|++..|+.-.... .++.....-+-..+...|+.+.++....+.++ +.||...+-.. | ..+.+..+.+
T Consensus 202 ~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~---Y---KklkKv~K~l 273 (504)
T KOG0624|consen 202 EGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPF---Y---KKLKKVVKSL 273 (504)
T ss_pred cCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHH---H---HHHHHHHHHH
Confidence 88888876544432 34456677777777778888888888877777 44554322211 1 1112222222
Q ss_pred HHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 006303 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM---ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (651)
Q Consensus 280 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (651)
+.|.+. .-.+++.++++..+...+....... ..+..+-.++..-|++.+|++...++...
T Consensus 274 es~e~~--------------ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--- 336 (504)
T KOG0624|consen 274 ESAEQA--------------IEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--- 336 (504)
T ss_pred HHHHHH--------------HhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc---
Confidence 222211 0012334444444444433211111 12223334444556666666666666652
Q ss_pred CCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 357 GVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 357 ~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.|| +.++.--..+|.-...+++|+.-|+...+.
T Consensus 337 ---d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 337 ---DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred ---CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 233 555666666666666666666666666654
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.76 E-value=0.00025 Score=73.80 Aligned_cols=113 Identities=13% Similarity=0.126 Sum_probs=66.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
|+..|..+++...+.|.|++-.+.+....+.. -+| ..=+.|+-+|++.++..+.++++ ..|+.....
T Consensus 1132 Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~----~E~--~id~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~ 1198 (1666)
T KOG0985|consen 1132 DPSNYLEVIDVASRTGKYEDLVKYLLMARKKV----REP--YIDSELIFAYAKTNRLTELEEFI-------AGPNVANIQ 1198 (1666)
T ss_pred CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhh----cCc--cchHHHHHHHHHhchHHHHHHHh-------cCCCchhHH
Confidence 55666677777777777777666666555421 122 23345666777777666555443 135666666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
.+.+-|...|.++.|.-+|... .-|..|...+...|++..|.+.-+
T Consensus 1199 ~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aR 1244 (1666)
T KOG0985|consen 1199 QVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAAR 1244 (1666)
T ss_pred HHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhh
Confidence 6666666667666666655543 235555555666666666655544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.1e-05 Score=86.47 Aligned_cols=312 Identities=9% Similarity=-0.066 Sum_probs=161.9
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCcc--ccchHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVK--ELDEEF 195 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~ 195 (651)
.....+...|++..+..+++.+.......+. .+. +.. ...+...|++++|...++.....-.... ......
T Consensus 379 ~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----~l~--~~~-a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~ 451 (903)
T PRK04841 379 QHGWSLFNQGELSLLEECLNALPWEVLLENP----RLV--LLQ-AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQ 451 (903)
T ss_pred HhHHHHHhcCChHHHHHHHHhCCHHHHhcCc----chH--HHH-HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHH
Confidence 3444566778888877777665321111111 111 111 1122346889999888877654211000 000000
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCC
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGD 271 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~ 271 (651)
. .....+...+...|++++|...++...+.....+ ..+.+.+...+...|+
T Consensus 452 ~-------------------------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 452 A-------------------------EFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred H-------------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 0 1111223344556777777777766654211111 1234555556666777
Q ss_pred HHHHHHHHHHHHhCCCc---ccH--HHHHHH--HHhhcCChHHHHHHHHHHHH----CCCC--C-CHHhHHHHHHHHHhc
Q 006303 272 YMKSRAIYEDLRSQNVT---LNI--YVFNSL--MNVNAHDLKFTLEVYKNMQK----LGVM--A-DMASYNILLKACCLA 337 (651)
Q Consensus 272 ~~~a~~~~~~~~~~g~~---~~~--~~~~~l--l~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~ 337 (651)
+++|...+++.....-. +.. ..+..+ +....|+++.|...+++... .+.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 77777777666532110 111 111111 11233677777776666543 2211 1 223344556667778
Q ss_pred CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHH-----HHHHHHHHhc
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITW-----SSLINACANA 411 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~-----~~ll~~~~~~ 411 (651)
|++++|...+++................+..+...+...|++++|.+.++......... ....+ ...+..+...
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMT 666 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHC
Confidence 99999999998876643322111123345556677888999999998888875421110 11111 1122344557
Q ss_pred CCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 412 GLVEQAMHLFEEMLQAGCEPNS---QCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 412 g~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
|+.+.|...+............ ..+..+..++...|++++|...+++...
T Consensus 667 g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 667 GDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred CCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 8888888887665432211111 1134455667778888888888877653
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=3.6e-06 Score=81.84 Aligned_cols=231 Identities=13% Similarity=0.117 Sum_probs=135.7
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 158 (651)
..+.+.|++.+|.-.||..... +|.+. ++...++......++-..|+..|++-++ +.|+. ..++
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkq--dP~ha------eAW~~LG~~qaENE~E~~ai~AL~rcl~--LdP~N------leaL 356 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQ--DPQHA------EAWQKLGITQAENENEQNAISALRRCLE--LDPTN------LEAL 356 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhh--ChHHH------HHHHHhhhHhhhccchHHHHHHHHHHHh--cCCcc------HHHH
Confidence 4445677788888888888777 77743 3444455567777777778888777776 55543 2344
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHH
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV 238 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 238 (651)
...+..|...|.-.+|+..++..+... |+.. + +..+ ...+.+. .+ ..+.....+.
T Consensus 357 maLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~--~--l~~a-~~~~~~~-------------~~-----~s~~~~~~l~ 411 (579)
T KOG1125|consen 357 MALAVSYTNEGLQNQALKMLDKWIRNK--PKYV--H--LVSA-GENEDFE-------------NT-----KSFLDSSHLA 411 (579)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHhC--ccch--h--cccc-Ccccccc-------------CC-----cCCCCHHHHH
Confidence 555556666777777777777665433 1100 0 0000 0000000 00 1112222333
Q ss_pred HHHHHHHHHHh-cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH
Q 006303 239 SALRAYDASKK-HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK 317 (651)
Q Consensus 239 ~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~ 317 (651)
+..++|-++.. .+..+|..+...|.-.|--.|++++|++.|+..+.. .
T Consensus 412 ~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~----------------------------- 460 (579)
T KOG1125|consen 412 HIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--K----------------------------- 460 (579)
T ss_pred HHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--C-----------------------------
Confidence 44444444433 232356667777777777777777777777776654 1
Q ss_pred CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 318 LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 318 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
+-|...||.|...++...+.++|+..|.+..+ ++|+ +.....|.-+|...|.+++|...|-..+
T Consensus 461 ---Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq------LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 461 ---PNDYLLWNRLGATLANGNRSEEAISAYNRALQ------LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred ---CchHHHHHHhhHHhcCCcccHHHHHHHHHHHh------cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 22566777777777777777777777777776 4455 3355556667777777777777665554
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=0.00017 Score=81.62 Aligned_cols=374 Identities=11% Similarity=0.063 Sum_probs=219.6
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccH---HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILF---CNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
....+...|++.+|.......+...... ......+...|+++.+...++.+.......+..........+...|+++
T Consensus 347 aa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~ 426 (903)
T PRK04841 347 AAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYS 426 (903)
T ss_pred HHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHH
Confidence 3445566677777776666655443222 1223445566888877777766532111122223334445556778999
Q ss_pred HHHHHHHHHHhCCC------cccHH----HHHHHHHhhcCChHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCC
Q 006303 274 KSRAIYEDLRSQNV------TLNIY----VFNSLMNVNAHDLKFTLEVYKNMQKLGVMAD----MASYNILLKACCLAGN 339 (651)
Q Consensus 274 ~a~~~~~~~~~~g~------~~~~~----~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~ 339 (651)
++...+......-- .+... .....+....|+++.|...+++....-...+ ....+.+...+...|+
T Consensus 427 ~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~ 506 (903)
T PRK04841 427 EVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGE 506 (903)
T ss_pred HHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCC
Confidence 99888887654210 11111 1111222345789999999988765311112 1244556667778999
Q ss_pred HHHHHHHHHHHHHhhhc-CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhc
Q 006303 340 TVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT--P-NTITWSSLINACANA 411 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~ 411 (651)
+++|...+++....... |........+..+...+...|++++|...+++.... +.. + ....+..+...+...
T Consensus 507 ~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 586 (903)
T PRK04841 507 LARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEW 586 (903)
T ss_pred HHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHh
Confidence 99999999888764322 111111234556677888899999999988876642 211 1 223344556667778
Q ss_pred CCHHHHHHHHHHHHHcC--CCCC--HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 412 GLVEQAMHLFEEMLQAG--CEPN--SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 412 g~~~~a~~~~~~~~~~~--~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
|++++|...+++..... ..+. ...+..+...+...|+++.|.+.++.........
T Consensus 587 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~--------------------- 645 (903)
T PRK04841 587 ARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG--------------------- 645 (903)
T ss_pred cCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc---------------------
Confidence 99999999988876531 1122 2334445567778999999999888765421100
Q ss_pred ccccCCCCccCCCcccccccccccCCCH-HHH---HHHHHHHhhcHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHhc
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTT-TTY---NILMKACCTDYYRVKALMNEMRTVGLSPNH---ISWTILIDACGG 560 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~---~~~~~li~~~~~ 560 (651)
+..... ... ........++.+.|...+............ ..+..+..++..
T Consensus 646 ----------------------~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 646 ----------------------RYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred ----------------------cccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 000000 000 011111234677777776665432111111 113456677888
Q ss_pred CCChHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006303 561 SGNVEGALQILKIMRED----GMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 561 ~g~~~~A~~~~~~~~~~----~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (651)
.|+.++|..++++.... |..++ ..++..+..++.+.|+.++|...+.+..+..
T Consensus 704 ~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 99999999999988652 32222 2456667778889999999999999998653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00031 Score=68.20 Aligned_cols=210 Identities=9% Similarity=0.005 Sum_probs=143.0
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
-+++..+++.....-..-+..+|..+...--..- ..+....+++++...-...-..+|..+|+.-.+..-...|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 4566677776665433334455555444322222 2666777777776643233334677888888888888999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-hcHHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKA 534 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~ 534 (651)
|.+..+.+. ..-.+.+++++|.-+| ++.+-|.+
T Consensus 389 F~kaR~~~r----------------------------------------------~~hhVfVa~A~mEy~cskD~~~Afr 422 (656)
T KOG1914|consen 389 FKKAREDKR----------------------------------------------TRHHVFVAAALMEYYCSKDKETAFR 422 (656)
T ss_pred HHHHhhccC----------------------------------------------CcchhhHHHHHHHHHhcCChhHHHH
Confidence 998876643 1337888999998877 58999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 535 LMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 535 ~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
+|+-=.+. ..-++.-....++-+...++-..+..+|++....++.|| ...|..++.-=..-|+...+.++-+++...
T Consensus 423 IFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 423 IFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 99876553 223444556778888889999999999999998866655 478999999989999999999998888632
Q ss_pred ---CCCCCHHHHHHHHHHHHhcCCHH
Q 006303 613 ---QIQPNLVTYITLLRARSRYGSLH 635 (651)
Q Consensus 613 ---g~~p~~~~~~~l~~~~~~~g~~~ 635 (651)
...+...+-..+++-|.-.+...
T Consensus 502 f~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 502 FPADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred cchhhcCCCChHHHHHHHHhhccccc
Confidence 12233334445555555555443
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.73 E-value=0.00052 Score=70.81 Aligned_cols=490 Identities=15% Similarity=0.102 Sum_probs=265.4
Q ss_pred hhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
.....+++++|.+..+++++. .|+.....+. -+-.+.+.|+.++|..+++..... .++ +..++.++-
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~~a~vL------kaLsl~r~gk~~ea~~~Le~~~~~--~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNALYAKVL------KALSLFRLGKGDEALKLLEALYGL--KGT---DDLTLQFLQ 84 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcHHHHHH------HHHHHHHhcCchhHHHHHhhhccC--CCC---chHHHHHHH
Confidence 345678999999999999999 6664322222 233478999999999998877754 333 334555554
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChH----HHHHHhhhCCCCCccHHHHHHHHhhcC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVN----LAIRYACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----~A~~~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
. .|.+.++.++|..+|++..+.. |. .+....+..+|.+.+++. .|.+++..+|.++..+-++++.+.+..
T Consensus 85 ~---~y~d~~~~d~~~~~Ye~~~~~~--P~-eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~ 158 (932)
T KOG2053|consen 85 N---VYRDLGKLDEAVHLYERANQKY--PS-EELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSI 158 (932)
T ss_pred H---HHHHHhhhhHHHHHHHHHHhhC--Cc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhc
Confidence 4 5566899999999999998855 55 666777778888877776 567889999999988777777765541
Q ss_pred ----------CHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHH-HHHhCCCcccHHHHHHHHHh--h
Q 006303 236 ----------DLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYE-DLRSQNVTLNIYVFNSLMNV--N 301 (651)
Q Consensus 236 ----------~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~g~~~~~~~~~~ll~~--~ 301 (651)
-..-|.+.++.+.+.+.. -+..-...-...+...|++++|.+++. ...+.-..-+...-+--+.. .
T Consensus 159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~ 238 (932)
T KOG2053|consen 159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL 238 (932)
T ss_pred cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 123566677777765411 122222233344567789999999983 33333222233332333332 3
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----------------cCCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
.+++.+..++-.++...|. |. |...++.+.+ .+..+...+..+.... . .....
T Consensus 239 l~~w~~l~~l~~~Ll~k~~--Dd--y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~---~----~~Rgp 307 (932)
T KOG2053|consen 239 LNRWQELFELSSRLLEKGN--DD--YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIG---S----KSRGP 307 (932)
T ss_pred hcChHHHHHHHHHHHHhCC--cc--hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhc---c----cccCc
Confidence 4678888888888877662 32 3332222211 1122222222222211 0 01111
Q ss_pred HHHHH---HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------H
Q 006303 366 YSTIV---KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-------C 435 (651)
Q Consensus 366 ~~~l~---~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~ 435 (651)
|-+-+ .-+-.-|+.+++.-.|-+-. |-. ..|..=+..|...=..++-..++....... ++.. -
T Consensus 308 ~LA~lel~kr~~~~gd~ee~~~~y~~kf--g~k---pcc~~Dl~~yl~~l~~~q~~~l~~~l~~~~--~~~s~~~k~l~~ 380 (932)
T KOG2053|consen 308 YLARLELDKRYKLIGDSEEMLSYYFKKF--GDK---PCCAIDLNHYLGHLNIDQLKSLMSKLVLAD--DDSSGDEKVLQQ 380 (932)
T ss_pred HHHHHHHHHHhcccCChHHHHHHHHHHh--CCC---cHhHhhHHHhhccCCHHHHHHHHHHhhccC--CcchhhHHHHHH
Confidence 22222 22234566666554443221 211 122222222222223333334443333221 1111 0
Q ss_pred HHHHHHHHHhcCC-----hhHHHHHHHHhhhccccc-ccccccCCchhhhhhhhhhccccccCCCCccCCCccccccccc
Q 006303 436 CNILLQACVEACQ-----FDRAFRLFRSWTLSKTQV-ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (651)
Q Consensus 436 ~~~ll~~~~~~g~-----~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (651)
+...+..-.-.|. .+.-..++.+....--.. .. ..
T Consensus 381 h~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~---------------------------------------~K 421 (932)
T KOG2053|consen 381 HLCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSL---------------------------------------SK 421 (932)
T ss_pred HHHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccc---------------------------------------cc
Confidence 1111111111221 122222222221110000 00 00
Q ss_pred ccCCCH---------HHHHHHHHHHhh-----cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 006303 510 SFKPTT---------TTYNILMKACCT-----DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (651)
Q Consensus 510 ~~~~~~---------~~~~~ll~~~~~-----~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (651)
++-|+. -+-+.+++.|-+ ..-+|.-+++.-.... ..|..+--.+|+.|+-.|-...|.++++.+-
T Consensus 422 ~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLd 500 (932)
T KOG2053|consen 422 DLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLD 500 (932)
T ss_pred cccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcc
Confidence 112222 234455566654 2345666666655532 2255566778899999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
-++++-|..-|- +..-+...|++..+...++.....=-.--..+-..+..|| +.|.+....+++..=++|.
T Consensus 501 IK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~ 571 (932)
T KOG2053|consen 501 IKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLM 571 (932)
T ss_pred hHHhhhccchHH-HHHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHH
Confidence 766776655443 3345667889999999988776431112223444444454 6788888887766655554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.4e-08 Score=58.82 Aligned_cols=32 Identities=47% Similarity=0.817 Sum_probs=17.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 578 GMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 578 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (651)
|+.||..|||.||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.8e-06 Score=78.94 Aligned_cols=234 Identities=14% Similarity=0.099 Sum_probs=166.8
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
-+.+.|++.+|.-.|+..+..... +...|..|.......++-..|+..+++..+.. +.+....-.|.-.|...|.-..
T Consensus 294 ~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 294 NLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 356788899999999998887543 77889999999899999999999999998875 4566777888888999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHH
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYR 531 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~ 531 (651)
|++.++.+.....+......... ... ...-+-.++.. ....
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~---------~~~-------------------~~~~~s~~~~~-----------~l~~ 412 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGE---------NED-------------------FENTKSFLDSS-----------HLAH 412 (579)
T ss_pred HHHHHHHHHHhCccchhccccCc---------ccc-------------------ccCCcCCCCHH-----------HHHH
Confidence 99999988765432111000000 000 00000011211 2234
Q ss_pred HHHHHHHH-HHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 532 VKALMNEM-RTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 532 a~~~~~~~-~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m 609 (651)
..++|-++ ...+..+|+.+...|...|.-.|.+++|...|+.++.. +| |..+||.|...++...+.++|++.|++.
T Consensus 413 i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 413 IQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 44455444 34455578888889999999999999999999998874 45 5678999999999999999999999999
Q ss_pred HHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Q 006303 610 KHYQIQPNL-VTYITLLRARSRYGSLHEVQQCLAVYQDMWKA 650 (651)
Q Consensus 610 ~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~~ 650 (651)
++ ++|+- ....-|..+|...|.+++|.+.+----.|.++
T Consensus 491 Lq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k 530 (579)
T KOG1125|consen 491 LQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK 530 (579)
T ss_pred Hh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence 85 56764 45666777888999998887765555555543
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.6e-07 Score=84.35 Aligned_cols=222 Identities=13% Similarity=0.083 Sum_probs=128.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC-CHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP-NTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~ 402 (651)
......+.+++...|+++.+. .++.. + -.|.......+...+...++-+.++.-++........+ +.....
T Consensus 35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~----~-~~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~ 106 (290)
T PF04733_consen 35 LERDFYQYRSYIALGQYDSVL---SEIKK----S-SSPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQL 106 (290)
T ss_dssp HHHHHHHHHHHHHTT-HHHHH---HHS-T----T-SSCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHH
T ss_pred HHHHHHHHHHHHHcCChhHHH---HHhcc----C-CChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHH
Confidence 334445667777777765433 22221 1 24555555444444433344444544444433332221 222222
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.....+...|++++|++++... .+.......+.+|.+.++++.|.+.++.|.+.
T Consensus 107 ~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-------------------- 160 (290)
T PF04733_consen 107 LAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-------------------- 160 (290)
T ss_dssp HHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Confidence 2233455567777777776542 35566666777777888888888777777642
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh----h--cHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC----T--DYYRVKALMNEMRTVGLSPNHISWTILID 556 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 556 (651)
..|.. ..-+..++. + .+..|..+|+++.+. ..+++.+.+.+..
T Consensus 161 -----------------------------~eD~~-l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~ 209 (290)
T PF04733_consen 161 -----------------------------DEDSI-LTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAV 209 (290)
T ss_dssp -----------------------------SCCHH-HHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHH
T ss_pred -----------------------------CCcHH-HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHH
Confidence 22322 222333322 2 467788888887654 5578888899999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 006303 557 ACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFSLFEEMKH 611 (651)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~ 611 (651)
++...|++++|.+++.+..+.+ +-|+.+...++.+....|+. +.+.+++.++..
T Consensus 210 ~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 210 CHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 9999999999999999887654 23667777788888888887 667788888875
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.64 E-value=3.8e-08 Score=57.96 Aligned_cols=34 Identities=26% Similarity=0.572 Sum_probs=31.7
Q ss_pred cCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHH
Q 006303 542 VGLSPNHISWTILIDACGGSGNVEGALQILKIMR 575 (651)
Q Consensus 542 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 575 (651)
.|+.||..||++||++|++.|++++|.++|++|.
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999984
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.9e-06 Score=78.08 Aligned_cols=144 Identities=13% Similarity=0.156 Sum_probs=85.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHH----cccC
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA----DAKW 378 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~ 378 (651)
|++++|++++..- .+.......+..|.+.++++.|.+.++.|.+. ..|. +...+..++. -.+.
T Consensus 116 ~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~------~eD~-~l~qLa~awv~l~~g~e~ 182 (290)
T PF04733_consen 116 GDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI------DEDS-ILTQLAEAWVNLATGGEK 182 (290)
T ss_dssp CHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC------SCCH-HHHHHHHHHHHHHHTTTC
T ss_pred CCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcH-HHHHHHHHHHHHHhCchh
Confidence 5566665555432 25556666677777778888888777777752 2232 2333333332 2345
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHH
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFR 457 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~ 457 (651)
+.+|..+|+++.+. ..++..+.+.+..++...|++++|.+++.+....+ +-++.+...++.++...|+. +.+.+.+.
T Consensus 183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~ 260 (290)
T PF04733_consen 183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLS 260 (290)
T ss_dssp CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence 77777788776544 45667777777777777788888887777766554 33455666666666666666 44555666
Q ss_pred Hhhh
Q 006303 458 SWTL 461 (651)
Q Consensus 458 ~~~~ 461 (651)
++..
T Consensus 261 qL~~ 264 (290)
T PF04733_consen 261 QLKQ 264 (290)
T ss_dssp HCHH
T ss_pred HHHH
Confidence 5543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00071 Score=70.55 Aligned_cols=200 Identities=14% Similarity=0.118 Sum_probs=92.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
.+|..+..+-.+.|.+.+|++-|-+. -|+..|..+++...+.|.|++-...+.-.++..-.|...+-..+..+.
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 45555555555556665555554332 234455566666666666666665555444444344333322222222
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
.++..+.++++ .-||......+.+-|...|.++.|.-+|..+ .-|..|...+...|+++.
T Consensus 1179 t~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v-------------SN~a~La~TLV~LgeyQ~ 1238 (1666)
T KOG0985|consen 1179 TNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV-------------SNFAKLASTLVYLGEYQG 1238 (1666)
T ss_pred hchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh-------------hhHHHHHHHHHHHHHHHH
Confidence 22222221111 1244444555555555555555554444322 234555555555666655
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
|.+.-++.- +..||-.+-.+|...+.+..| +|--.++-....-..-++.-|-..|-+++.+.+++.
T Consensus 1239 AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1239 AVDAARKAN------STKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHhhhcc------chhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 555444322 445555555555544443322 111111222333344455555555555555555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.58 E-value=0.0015 Score=68.40 Aligned_cols=382 Identities=10% Similarity=-0.001 Sum_probs=200.5
Q ss_pred CCCCCCCcccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhh
Q 006303 46 LSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIR 125 (651)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 125 (651)
.....+.+.....+..+++-+|.. ...+..++.+|...|++.-|+.+|+++... +|+++... .......+.
T Consensus 572 yLea~n~h~aV~~fQsALR~dPkD-~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s~y~~------fk~A~~ecd 642 (1238)
T KOG1127|consen 572 YLEAHNLHGAVCEFQSALRTDPKD-YNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLSKYGR------FKEAVMECD 642 (1238)
T ss_pred ccCccchhhHHHHHHHHhcCCchh-HHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHhHHHH------HHHHHHHHH
Confidence 333444455556688888888888 999999999999999999999999998877 88765332 233444788
Q ss_pred hcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC------CCccccchHHHHHH
Q 006303 126 EGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR------LPVKELDEEFRIVQ 199 (651)
Q Consensus 126 ~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~ 199 (651)
.|++.+|+..+..+...--.- ......+...+++....+...|-...|...+++..+.- ....+...|..+..
T Consensus 643 ~GkYkeald~l~~ii~~~s~e-~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asd 721 (1238)
T KOG1127|consen 643 NGKYKEALDALGLIIYAFSLE-RTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASD 721 (1238)
T ss_pred hhhHHHHHHHHHHHHHHHHHH-HHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhH
Confidence 999999999999887631000 00111233444444444444566666666666543321 00222233333333
Q ss_pred HHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhh----cCCH---H---HHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-
Q 006303 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGK----KRDL---V---SALRAYDASKKHLSSPNMYICRTIIDVCGI- 268 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~----~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 268 (651)
+| ..|.+..++ .+-..++..+.. .+.. + -+.+.+-.-.. ...+...|..|+..|.+
T Consensus 722 ac----------~~f~q~e~~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 722 AC----------YIFSQEEPS-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred HH----------HHHHHhccc-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHHHHHH
Confidence 33 233333322 111122222222 1111 1 11111111111 11123344444443333
Q ss_pred ---c----CCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 269 ---C----GDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 269 ---~----g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
. .+...|+..+....+... -+..+||.|=-. . |.+.-+..-|-+-.... +.+..+|..+.-.+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L~a-nn~~~WnaLGVl-sg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSLCA-NNEGLWNALGVL-SGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHhh-ccHHHHHHHHHh-hccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 1 122356666665544311 144555554333 3 34444444444443332 3456778888878888888
Q ss_pred HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH--HH--CCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM--LS--AGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m--~~--~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
++.|...|.....+ .+.|...|-.........|+.-+...+|..- .. .|-.++..-|..........|+.+
T Consensus 866 ~E~A~~af~~~qSL-----dP~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e 940 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSL-----DPLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE 940 (1238)
T ss_pred HHHhhHHHHhhhhc-----CchhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence 88888888888764 3455666777777777778877777777662 21 222333333333333344555554
Q ss_pred HHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 416 QAMHLFEEMLQA---------GCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 416 ~a~~~~~~~~~~---------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+-+...+++-.. +.+.+...|........+.+.+..|.++..+
T Consensus 941 ~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~R 992 (1238)
T KOG1127|consen 941 ESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATR 992 (1238)
T ss_pred HHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 433333332211 2233334555554444455555555554443
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00082 Score=65.44 Aligned_cols=234 Identities=16% Similarity=0.122 Sum_probs=143.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH-----
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW----- 401 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----- 401 (651)
...+.++..+..++..+++.+.....+ .-++.-++....+|...|.+.++........+.|-. ...-|
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el------~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak 299 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALEL------ATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAK 299 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhH------hhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHH
Confidence 445667777778888888888888763 335555677777888888888877777776665432 12222
Q ss_pred --HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhh
Q 006303 402 --SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRI 479 (651)
Q Consensus 402 --~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 479 (651)
..+..+|.+.++++.++..|.+.......|+.. .+....+++....+...-
T Consensus 300 ~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~------------------ 352 (539)
T KOG0548|consen 300 ALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY------------------ 352 (539)
T ss_pred HHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh------------------
Confidence 223345556677777777777765543333221 122223333333322211
Q ss_pred hhhhhhccccccCCCCccCCCcccccccccccCCCHHH--HHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006303 480 SNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTT--YNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILID 556 (651)
Q Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~ 556 (651)
+.|.... -..-...+. +++..|...|.++++.. +-|...|..-.-
T Consensus 353 -------------------------------~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAa 400 (539)
T KOG0548|consen 353 -------------------------------INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAA 400 (539)
T ss_pred -------------------------------hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHH
Confidence 1222210 000011122 47889999999998875 347788999999
Q ss_pred HHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 557 ACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 557 ~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
+|.++|.+..|++=.+..++. .|+ ...|..=..++....++++|.+.|++..+. .|+..-+.--+.-|..
T Consensus 401 c~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 401 CYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence 999999999998888777774 333 334444455555667888999999888865 3666555555554444
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.2e-05 Score=74.47 Aligned_cols=190 Identities=8% Similarity=-0.032 Sum_probs=131.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+.++.. .|+... ...++..++..+...|++++|+..++++.+. .|+...
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 105 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESR--YPFSPY---AEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPD 105 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchh---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 677788888999999999999999999887 554321 1345567788899999999999999999984 454332
Q ss_pred cchhhHHHHHHHHHHh--------hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCc
Q 006303 151 DGSGFKLLKNECQRLL--------DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~--------~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (651)
....+ +.. ...+. ..|++++|++.++++.... |.+...+..+.......+.. ..
T Consensus 106 ~~~a~--~~~-g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~~~~~~~-------------~~ 167 (235)
T TIGR03302 106 ADYAY--YLR-GLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMDYLRNRL-------------AG 167 (235)
T ss_pred hHHHH--HHH-HHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHHHHHHHH-------------HH
Confidence 11111 111 11222 2378999999999998755 54443333222111100000 01
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
....+...|.+.|++.+|+..++...+.... | ....+..+..++.+.|++++|...++.+..+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 1235677899999999999999999875431 2 3568889999999999999999999888765
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00012 Score=78.74 Aligned_cols=224 Identities=14% Similarity=0.105 Sum_probs=154.7
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+...|-..|......++.+.|.+++++++.. +.+. ...|.++++.-..-|.-+...++|+++.+. .....+|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V~ 1533 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTVH 1533 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHHH
Confidence 3456777777777777777777777777643 2111 135666666666667777777777777664 2233467
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..|...|.+.+..++|.++++.|.+. +.-...
T Consensus 1534 ~~L~~iy~k~ek~~~A~ell~~m~KK------------------------------------------------F~q~~~ 1565 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKK------------------------------------------------FGQTRK 1565 (1710)
T ss_pred HHHHHHHHHhhcchhHHHHHHHHHHH------------------------------------------------hcchhh
Confidence 77777777777777887777777654 133445
Q ss_pred HHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPN---HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 517 ~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
.|...+..+.+ +.+.|..++.++.+. -|. .....-.+..-.+.|+.+.+..+|+.....- +.....|+.+|+
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYID 1642 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHH
Confidence 56666666554 345667777777664 333 3445555666678899999999999888753 336778999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHH
Q 006303 592 VCVRSKRLKQAFSLFEEMKHYQIQPNL--VTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 592 ~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~ 639 (651)
.-.++|+.+.+..+|++.+..++.|-. ..|..++..=-..|+-+.++.
T Consensus 1643 ~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~ 1692 (1710)
T KOG1070|consen 1643 MEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEY 1692 (1710)
T ss_pred HHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHH
Confidence 999999999999999999988877765 567777776667777665544
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00023 Score=69.08 Aligned_cols=375 Identities=10% Similarity=0.027 Sum_probs=216.8
Q ss_pred hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHH
Q 006303 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 167 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 242 (651)
..|+++.|+..|.+.+... |++...++.-..+|...|++++|.+--.. -|..+..|+.+..++.-.|++++|+.
T Consensus 14 s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ 91 (539)
T KOG0548|consen 14 SSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL 91 (539)
T ss_pred ccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence 3799999999999988744 77888999999999999999998865433 47777899999999999999999999
Q ss_pred HHHHHHhcCCCC-cHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhC---CCcccHHHHHHHHHhhcC---------ChH
Q 006303 243 AYDASKKHLSSP-NMYICRTIIDVCGICGDY---MKSRAIYEDLRSQ---NVTLNIYVFNSLMNVNAH---------DLK 306 (651)
Q Consensus 243 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~---g~~~~~~~~~~ll~~~~~---------~~~ 306 (651)
.|.+-++. .| +...++-+.+++...... -.--.++..+... ........|..++..... ...
T Consensus 92 ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~ 169 (539)
T KOG0548|consen 92 AYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDP 169 (539)
T ss_pred HHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccH
Confidence 99998884 34 566777777776111000 0000111111100 000111222223222111 011
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CH----HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAG-NT----VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~----~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
...+....+...+. . .+...-......+ .. ..............+ ...-..-...+.++..+..++..
T Consensus 170 r~m~a~~~l~~~~~--~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~---~k~~a~~ek~lgnaaykkk~f~~ 242 (539)
T KOG0548|consen 170 RLMKADGQLKGVDE--L--LFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR---VKEKAHKEKELGNAAYKKKDFET 242 (539)
T ss_pred HHHHHHHHHhcCcc--c--cccccccccCCCCCCcccccCCCCCccchhHHHHH---HHHhhhHHHHHHHHHHHhhhHHH
Confidence 11111111111000 0 0000000000000 00 000000000000000 00112234567788888889999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCChhHHHH
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI-------LLQACVEACQFDRAFR 454 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-------ll~~~~~~g~~~~a~~ 454 (651)
+.+.+....+.. -+..-++....+|...|.+...........+.|. -...-|+. +..+|.+.++++.++.
T Consensus 243 a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~ 319 (539)
T KOG0548|consen 243 AIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIK 319 (539)
T ss_pred HHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHH
Confidence 999999998764 3555667777788888888888777777766652 12222333 3346667788888888
Q ss_pred HHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHH
Q 006303 455 LFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKA 534 (651)
Q Consensus 455 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~ 534 (651)
.|.+...... .|+... . .+..+++..
T Consensus 320 ~~~kaLte~R-----------------------------------------------t~~~ls------~-lk~~Ek~~k 345 (539)
T KOG0548|consen 320 YYQKALTEHR-----------------------------------------------TPDLLS------K-LKEAEKALK 345 (539)
T ss_pred HHHHHhhhhc-----------------------------------------------CHHHHH------H-HHHHHHHHH
Confidence 8887554321 222111 0 112334444
Q ss_pred HHHHHHHcCCCCcHH-HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 535 LMNEMRTVGLSPNHI-SWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 535 ~~~~~~~~~~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
......- +.|... -.-.-...+.+.|++..|.+.+.+++... +-|...|....-+|.+.|.+..|++=.+..++.
T Consensus 346 ~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL 421 (539)
T KOG0548|consen 346 EAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL 421 (539)
T ss_pred HHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 3333332 223221 11222667788999999999999999875 447889999999999999999999987777754
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.2e-05 Score=71.70 Aligned_cols=49 Identities=12% Similarity=-0.043 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
++++..++++.+... .|..+|+....++.+.|+++++++.++++++.++
T Consensus 125 ~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~ 173 (320)
T PLN02789 125 NKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV 173 (320)
T ss_pred HHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC
Confidence 456777777776432 3667777777777777778777777777776643
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.4e-05 Score=76.60 Aligned_cols=217 Identities=13% Similarity=0.171 Sum_probs=125.3
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.-..+...+...|-..+|..+|+++. .|..++.+|+..|+..+|..+..+..+. +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456777888888888888887653 4777888899999999999988888773 788888888888877
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHH
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKA 524 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ 524 (651)
..--+++|+++.+.....-. . .++.++..
T Consensus 469 d~s~yEkawElsn~~sarA~-r--------------------------------------------------~~~~~~~~ 497 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISARAQ-R--------------------------------------------------SLALLILS 497 (777)
T ss_pred ChHHHHHHHHHhhhhhHHHH-H--------------------------------------------------hhcccccc
Confidence 77778888888876543200 0 00000000
Q ss_pred HhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 006303 525 CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD-VVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 525 ~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~-~~~~~~li~~~~~~g~~~~A~ 603 (651)
.++++++.+.|+.-.+.. .--..+|-.+..+..++++++.|.+.|...... .|| ...||.+-.+|.+.|+..+|.
T Consensus 498 -~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~ 573 (777)
T KOG1128|consen 498 -NKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAF 573 (777)
T ss_pred -chhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHH
Confidence 123444444444443321 113334444445555555555555555555442 332 345555555555555555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQDMW 648 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m~ 648 (651)
..+++..+.+ .-+-..|...+-.....|.+++|.++..-+.+|.
T Consensus 574 ~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~ 617 (777)
T KOG1128|consen 574 RKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLR 617 (777)
T ss_pred HHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhh
Confidence 5555555444 3333444444445555555555555444444443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.8e-05 Score=69.97 Aligned_cols=148 Identities=8% Similarity=0.031 Sum_probs=112.5
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
.-.+..|...|+++.+....+.+.. |.. .+...++.++++..++..+... |++...|..
T Consensus 20 ~~~~~~Y~~~g~~~~v~~~~~~~~~----~~~---------------~~~~~~~~~~~i~~l~~~L~~~--P~~~~~w~~ 78 (198)
T PRK10370 20 FLCVGSYLLSPKWQAVRAEYQRLAD----PLH---------------QFASQQTPEAQLQALQDKIRAN--PQNSEQWAL 78 (198)
T ss_pred HHHHHHHHHcchHHHHHHHHHHHhC----ccc---------------cccCchhHHHHHHHHHHHHHHC--CCCHHHHHH
Confidence 3445678999999987666543322 110 0111477788888888888755 888999999
Q ss_pred HHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHH-hhcCC--HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 197 IVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREF-GKKRD--LVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
++..|...|++++|...+++. |.+..++..+..++ ...|+ .++|.+++++..+.+. -+..++..+...+.+.
T Consensus 79 Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP-~~~~al~~LA~~~~~~ 157 (198)
T PRK10370 79 LGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA-NEVTALMLLASDAFMQ 157 (198)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC-CChhHHHHHHHHHHHc
Confidence 999999999999999887764 67778888888864 66677 5899999999988543 2667888888888899
Q ss_pred CCHHHHHHHHHHHHhCC
Q 006303 270 GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g 286 (651)
|++++|+..|+.+.+..
T Consensus 158 g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 158 ADYAQAIELWQKVLDLN 174 (198)
T ss_pred CCHHHHHHHHHHHHhhC
Confidence 99999999999987764
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00027 Score=75.29 Aligned_cols=237 Identities=11% Similarity=0.073 Sum_probs=142.1
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKA 333 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 333 (651)
+...+..|+..+...+++++|.++.+...+.... +....+..++....++..++ ....+++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~-----------------~lv~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDS-----------------NLLNLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhh-----------------hhhhhhhh
Confidence 4566777777777777777777777755544211 22222333322222221111 11145555
Q ss_pred HHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 334 CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (651)
Q Consensus 334 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 413 (651)
.....++.-+..++..+.. ..-+...+-.+..+|-+.|+.+++..+|+++++.. +-|..+.|.+...|... +
T Consensus 93 ~~~~~~~~~ve~~~~~i~~------~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILL------YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred cccccchhHHHHHHHHHHh------hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-h
Confidence 5555556555555555554 23455577777888888888888888888888776 33777788888888777 8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCC
Q 006303 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNT 493 (651)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (651)
.++|.+++.+.... +...+++..+.+++.++....
T Consensus 165 L~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~------------------------------ 199 (906)
T PRK14720 165 KEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN------------------------------ 199 (906)
T ss_pred HHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC------------------------------
Confidence 88888877777543 556667777777777776542
Q ss_pred CCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcCCChHHHHHHHH
Q 006303 494 PNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGSGNVEGALQILK 572 (651)
Q Consensus 494 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 572 (651)
|+ +++.-.++.+.+... |..--..++--+-..|-...+++++..++.
T Consensus 200 -------------------~~-------------d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK 247 (906)
T PRK14720 200 -------------------SD-------------DFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK 247 (906)
T ss_pred -------------------cc-------------cchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 21 222333333444332 323334455556666777788888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHH
Q 006303 573 IMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 573 ~~~~~~~~p~~~~~~~li~~~~ 594 (651)
.+.+..-+ |.....-++.+|.
T Consensus 248 ~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 248 KILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHhcCCc-chhhHHHHHHHHH
Confidence 88875322 5555556666655
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00022 Score=62.86 Aligned_cols=94 Identities=13% Similarity=0.070 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHhh------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 515 TTTYNILMKACCT------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 515 ~~~~~~ll~~~~~------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
..|.+-|..++.+ ....|.-+|++|.+. ..|+..+.+....++...|++++|..++++...+.-+ ++.+...
T Consensus 169 d~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~N 246 (299)
T KOG3081|consen 169 DATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLAN 246 (299)
T ss_pred HHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHH
Confidence 3444545555432 355677777777653 4678888888888888888888888888888876433 5666666
Q ss_pred HHHHHHhcCCH-HHHHHHHHHHH
Q 006303 589 AIKVCVRSKRL-KQAFSLFEEMK 610 (651)
Q Consensus 589 li~~~~~~g~~-~~A~~~~~~m~ 610 (651)
+|..-...|+. +-..+.+.+++
T Consensus 247 liv~a~~~Gkd~~~~~r~l~QLk 269 (299)
T KOG3081|consen 247 LIVLALHLGKDAEVTERNLSQLK 269 (299)
T ss_pred HHHHHHHhCCChHHHHHHHHHHH
Confidence 66665566654 33445555555
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00035 Score=61.64 Aligned_cols=238 Identities=13% Similarity=0.085 Sum_probs=150.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.-.|.+..++..-..... .+-+...-..+.++|...|.+.....-. ... -.|....+..+......-+
T Consensus 17 n~fY~Gnyq~~ine~~~~~~------~~~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~ 86 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSS------SKTDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELES 86 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcc------ccchhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcc
Confidence 34445677666655544432 1233344445566777777665433222 222 2344444544444444444
Q ss_pred CHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcccccc
Q 006303 413 LVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSIT 491 (651)
Q Consensus 413 ~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (651)
+.+. ..++.+.+.......+......-...|++.|++++|++..+...
T Consensus 87 ~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------------------------------- 135 (299)
T KOG3081|consen 87 NKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------------------------------- 135 (299)
T ss_pred hhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc-------------------------------
Confidence 4443 33444555544434443333334456888999999998887521
Q ss_pred CCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc----CCChHHH
Q 006303 492 NTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG----SGNVEGA 567 (651)
Q Consensus 492 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 567 (651)
..+....+.-|..-....+.|.+.+++|.+- .+..|.+.|..++.+ .+.+.+|
T Consensus 136 --------------------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdA 192 (299)
T KOG3081|consen 136 --------------------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDA 192 (299)
T ss_pred --------------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhH
Confidence 2233333333333334678888888999873 456677767666654 4578999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE 636 (651)
Q Consensus 568 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~ 636 (651)
.-+|++|.++ ..|+..+.+....++...|++++|..++++..... .-+..+...++-+....|+-.+
T Consensus 193 fyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 193 FYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChH
Confidence 9999999875 57899999999999999999999999999999764 4467777777777777777644
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.39 E-value=4.1e-05 Score=70.80 Aligned_cols=187 Identities=11% Similarity=-0.023 Sum_probs=110.7
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
...+..++..+.+.|++++|...|+++...... |. ..++..+..++...|++++|+..++++.+.........
T Consensus 33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~----- 107 (235)
T TIGR03302 33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDAD----- 107 (235)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchH-----
Confidence 366777888899999999999999998874321 11 24677888889999999999999999887632211100
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH--------hcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHH
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC--------LAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTI 369 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l 369 (651)
.++..+..++. ..|+.++|.+.|+.+... .|+.. .+..+
T Consensus 108 --------------------------~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~a~ 155 (235)
T TIGR03302 108 --------------------------YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR------YPNSEYAPDAK 155 (235)
T ss_pred --------------------------HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH------CCCChhHHHHH
Confidence 01111222222 236677788888877762 23322 22211
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPNSQCCNILLQACVEAC 447 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g 447 (651)
.... . .... . ......+...+.+.|++++|...++...+... +.....+..+..++.+.|
T Consensus 156 ~~~~-~---~~~~------~--------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 156 KRMD-Y---LRNR------L--------AGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHH-H---HHHH------H--------HHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 1110 0 0000 0 00112344556777777777777777766521 123456667777777777
Q ss_pred ChhHHHHHHHHhhhc
Q 006303 448 QFDRAFRLFRSWTLS 462 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~ 462 (651)
++++|...++.+...
T Consensus 218 ~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 218 LKDLAQDAAAVLGAN 232 (235)
T ss_pred CHHHHHHHHHHHHhh
Confidence 777777777666543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00073 Score=64.48 Aligned_cols=207 Identities=9% Similarity=0.017 Sum_probs=116.9
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 411 (651)
.+...++.++|..++.++.++ .+-+..+|+.--.++...| ++++++..++++.....+ +..+|+.....+.+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l-----nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l 119 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL-----NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH-----CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHc
Confidence 334455666777777766653 1223334555445555555 467777777776665433 445565554445555
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcccc
Q 006303 412 GLV--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQS 489 (651)
Q Consensus 412 g~~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (651)
|+. +.++.+++++.+.+ +-+..+|+....++.+.|+++++++.++++.+.++
T Consensus 120 ~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~------------------------- 173 (320)
T PLN02789 120 GPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDV------------------------- 173 (320)
T ss_pred CchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCC-------------------------
Confidence 542 55666666666654 34555666666666666777777777777665432
Q ss_pred ccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh---------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006303 490 ITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (651)
Q Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 560 (651)
.|...|+.....+.+ ..+.......+++... +-|...|+-+...+..
T Consensus 174 -----------------------~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 174 -----------------------RNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKD 229 (320)
T ss_pred -----------------------CchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhc
Confidence 222223222221110 1234555555665532 2255677777777766
Q ss_pred C----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 561 S----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (651)
Q Consensus 561 ~----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 596 (651)
. ++..+|...+.+..+.+ ..+......|++.|+..
T Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~ 268 (320)
T PLN02789 230 DKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEG 268 (320)
T ss_pred CCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhh
Confidence 3 44566888888876643 23566777888888753
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.37 E-value=8.7e-05 Score=65.41 Aligned_cols=166 Identities=11% Similarity=0.002 Sum_probs=121.1
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
|.+..+ ..+...+...|+-+....+....... ...+....+..+....+.|++.+|+..+.+....
T Consensus 64 p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l------------ 129 (257)
T COG5010 64 PEDLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL------------ 129 (257)
T ss_pred cchHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc------------
Confidence 444444 55556666667777776666665432 1234555666777777777777777777776543
Q ss_pred HHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc
Q 006303 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK 377 (651)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 377 (651)
-++|...|+.+.-+|.+.|+.++|..-|.+..++ ..-+...+|.|...|.-.|
T Consensus 130 ----------------------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L-----~~~~p~~~nNlgms~~L~g 182 (257)
T COG5010 130 ----------------------APTDWEAWNLLGAALDQLGRFDEARRAYRQALEL-----APNEPSIANNLGMSLLLRG 182 (257)
T ss_pred ----------------------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHh-----ccCCchhhhhHHHHHHHcC
Confidence 1568888999999999999999999999888875 2345667888888888999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
+++.|..++......+. -|...-..+.......|+++.|..+-..-.
T Consensus 183 d~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~i~~~e~ 229 (257)
T COG5010 183 DLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAEDIAVQEL 229 (257)
T ss_pred CHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHhhccccc
Confidence 99999999988887653 377777788888888999999888776554
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.3e-05 Score=76.66 Aligned_cols=211 Identities=13% Similarity=0.057 Sum_probs=98.0
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC--C
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH--D 304 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~ 304 (651)
+.+.+...|-...|..+|+++. .|.-.+.+|...|+..+|..+..+..++ +||...|..+...... -
T Consensus 404 laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d~s~ 472 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHDPSL 472 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccChHH
Confidence 4444444444455555444432 2333444444444444444444444432 3444444444333221 2
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALK 384 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 384 (651)
+++|.++.+..... .-..+.....+.++++++.+.|+.-.++ .+.-..+|-.+..+..+.++++.|.+
T Consensus 473 yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~-----nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 473 YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI-----NPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc-----CccchhHHHhccHHHHHHhhhHHHHH
Confidence 33444444332211 1111112222345555555555554443 13334455555555555555555555
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 385 VKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 385 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.|....... +-+...|+.+-.+|.+.++..+|...+.+..+.+ .-+...|...+-...+.|.+++|++.++++...
T Consensus 541 aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 541 AFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 555555432 1134455555555555555555555555555554 333334444444455555555555555555444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.0004 Score=74.92 Aligned_cols=227 Identities=10% Similarity=0.007 Sum_probs=165.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-----cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 397 (651)
+...|...|......++.+.|.++.+++... +.+ -...|.++++.-..-|.-+...++|+++.+.. -.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t-----IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~ 1529 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT-----INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DA 1529 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh-----CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--ch
Confidence 4567888888888999999999999988753 212 13367777777777788888999999998752 13
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchh
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (651)
...|..|...|.+.+++++|.++|+.|.+.- .....+|...++.+.+.++-+.|..++.+.++.-....
T Consensus 1530 ~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e---------- 1598 (1710)
T KOG1070|consen 1530 YTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE---------- 1598 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh----------
Confidence 4568889999999999999999999998863 45677898899999999998999999887765311000
Q ss_pred hhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006303 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDA 557 (651)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~ 557 (651)
-.....-.+.+.--.++.+++..+|+.....- +-....|+.+|+.
T Consensus 1599 ----------------------------------Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~ 1643 (1710)
T KOG1070|consen 1599 ----------------------------------HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDM 1643 (1710)
T ss_pred ----------------------------------hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHH
Confidence 00011111222222357888889999888752 2367799999999
Q ss_pred HhcCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHH
Q 006303 558 CGGSGNVEGALQILKIMREDGMSPDV--VAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 558 ~~~~g~~~~A~~~~~~~~~~~~~p~~--~~~~~li~~~~~~g~~~~A 602 (651)
-.+.|+.+.+..+|++.+..++.|-. ..|.-.+.---..|+-+.+
T Consensus 1644 eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~v 1690 (1710)
T KOG1070|consen 1644 EIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNV 1690 (1710)
T ss_pred HHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhH
Confidence 99999999999999999998877653 4566666655556664433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00025 Score=74.86 Aligned_cols=134 Identities=11% Similarity=-0.026 Sum_probs=107.6
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 399 (651)
..+...+..|.....+.|.+++|..+++.+.+ +.|+ ......+...+.+.+++++|+..+++....... +..
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~------~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~ 155 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQ------RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAR 155 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh------hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHH
Confidence 34678888888888899999999999998887 3455 456777888889999999999999998877533 566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
....+..++.+.|++++|..+|+++...+ +-+..++..+..++.+.|+.++|...|++..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77777888888999999999999998743 345678888888888899999999999887654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00023 Score=75.91 Aligned_cols=148 Identities=9% Similarity=0.050 Sum_probs=97.6
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVF 294 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~ 294 (651)
+..++..++.+|-+.|+.+++..+|+++++.. +-|+.+.|.+...|+.. ++++|.+++.+....-+. .=...|
T Consensus 115 ~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W 192 (906)
T PRK14720 115 NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIW 192 (906)
T ss_pred hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHH
Confidence 34567778888888888888888888888855 24677888888888888 888888888777654211 011122
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 295 NSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
..++..-..+++.-.++.+.+... |..--..++--+-..|...++++++..+++.+.+.. +.|.....-++.+|
T Consensus 193 ~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-----~~n~~a~~~l~~~y 267 (906)
T PRK14720 193 SKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-----NKNNKAREELIRFY 267 (906)
T ss_pred HHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-----CcchhhHHHHHHHH
Confidence 222222234555566666666554 333345566667778888889999999999998742 33555666677666
Q ss_pred H
Q 006303 374 A 374 (651)
Q Consensus 374 ~ 374 (651)
.
T Consensus 268 ~ 268 (906)
T PRK14720 268 K 268 (906)
T ss_pred H
Confidence 5
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00025 Score=62.82 Aligned_cols=125 Identities=12% Similarity=0.102 Sum_probs=96.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH-HcccC--HH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF-ADAKW--WQ 380 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~--~~ 380 (651)
+.+++...++...+.. +.|...|..|...|...|++++|...|++..++ .+.+...+..+..++ ...|+ .+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l-----~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQL-----RGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 3455555555555543 457889999999999999999999999999884 244667777777764 67777 59
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+|.+++++..+.+.. +...+..+...+.+.|++++|...|+++.+.. +|+..-+
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~ 181 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT 181 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence 999999999987644 77888889999999999999999999998875 4554433
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00028 Score=74.44 Aligned_cols=115 Identities=3% Similarity=-0.098 Sum_probs=60.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.|++++|..+++.+++.. |++..++..++..+.+.+++++|+..+++ .|.+....+.+..++.+.|++++|..+
T Consensus 99 ~g~~~ea~~~l~~~~~~~--Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 99 AHRSDEGLAVWRGIHQRF--PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred cCCcHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 344444444444444422 44444444444444444444444433322 244445555666666666666666666
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|+++...+. -+..++..+...+.+.|+.++|...|+.....
T Consensus 177 y~~~~~~~p-~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~ 217 (694)
T PRK15179 177 FERLSRQHP-EFENGYVGWAQSLTRRGALWRARDVLQAGLDA 217 (694)
T ss_pred HHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 666665211 23556666666666666666666666666543
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=9.7e-05 Score=61.68 Aligned_cols=119 Identities=10% Similarity=-0.013 Sum_probs=90.4
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
..++++..+. ++..+..+...+...|++++|...|+..... -+.+...|..+..++...|++++|...|+.
T Consensus 13 ~~~~~~al~~----~p~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLSV----DPETVYASGYASWQEGDYSRAVIDFSWLVMA-----QPWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHHc----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3455555543 3334556777888899999999999998873 245677888899999999999999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..... +.+...+..+..++.+.|+.++|...|+...+.. +.+...+..
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~-p~~~~~~~~ 131 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS-YADASWSEI 131 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 99865 3477888889999999999999999999988764 233334433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00056 Score=59.92 Aligned_cols=184 Identities=15% Similarity=0.079 Sum_probs=112.9
Q ss_pred cCChHHHHHHHHHHHHh---c-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 84 DGRLEEFAMIVESVVVS---E-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~---~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
..+.++..+++..++.. | ..|+. +..+..++.+..-.|+.+.|...++++... .|...-...+..++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~------w~l~EqV~IAAld~~~~~lAq~C~~~L~~~--fp~S~RV~~lkam~- 95 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEI------WTLYEQVFIAALDTGRDDLAQKCINQLRDR--FPGSKRVGKLKAML- 95 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchH------HHHHHHHHHHHHHhcchHHHHHHHHHHHHh--CCCChhHHHHHHHH-
Confidence 35667888888887754 2 33342 344556677778899999999999988874 24332111222222
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHH----HhhhCCCCCccHHHHHHHHhhcC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIR----YACIVPRADILFCNFVREFGKKR 235 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~----~~~~~~~~~~~~~~l~~~~~~~g 235 (651)
+-..|++++|+++|+.+++.+ |++...+-.-+...-..|+..+|++ +++.++.+.++|.-+.+.|...|
T Consensus 96 -----lEa~~~~~~A~e~y~~lL~dd--pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~ 168 (289)
T KOG3060|consen 96 -----LEATGNYKEAIEYYESLLEDD--PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG 168 (289)
T ss_pred -----HHHhhchhhHHHHHHHHhccC--cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence 233689999999999998866 6666655555555555666556654 34556666677777777777777
Q ss_pred CHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Q 006303 236 DLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG---DYMKSRAIYEDLRSQ 285 (651)
Q Consensus 236 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~ 285 (651)
+++.|.-.++++.- +.| +...+..+.+.+--.| +.+.+.+.|.+..+.
T Consensus 169 ~f~kA~fClEE~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 169 DFEKAAFCLEELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 77777777777665 334 3334444444433322 344555555555544
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0096 Score=58.30 Aligned_cols=126 Identities=13% Similarity=0.116 Sum_probs=97.9
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTT 588 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~ 588 (651)
.|+. +|..+|+...+ ..+.|..+|.++.+.+..+ +..++++++.-||. ++...|.++|+.=.++ ..-++.-...
T Consensus 364 ~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~ 440 (656)
T KOG1914|consen 364 DLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLK 440 (656)
T ss_pred CCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHH
Confidence 4443 34455554433 6788999999999988777 77888999987764 7889999999986664 2223444567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHH
Q 006303 589 AIKVCVRSKRLKQAFSLFEEMKHYQIQPNL--VTYITLLRARSRYGSLHEVQQC 640 (651)
Q Consensus 589 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~ 640 (651)
.+.-+.+.++-..|..+|++....++.||. ..|..++.-=...|+...+.++
T Consensus 441 YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~l 494 (656)
T KOG1914|consen 441 YLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKL 494 (656)
T ss_pred HHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHH
Confidence 888899999999999999999987777665 7999999999999998876553
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.15 E-value=4.4e-06 Score=50.23 Aligned_cols=33 Identities=33% Similarity=0.583 Sum_probs=26.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN 617 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 617 (651)
+||.+|.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 578888888888888888888888888788776
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.016 Score=60.34 Aligned_cols=435 Identities=11% Similarity=0.108 Sum_probs=242.7
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+++..|++..++++... |+...+...-+-...+.|..++|..+++.. +.+..+...+-..|.+.++.++|..+
T Consensus 22 ~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~ 99 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHL 99 (932)
T ss_pred hHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHH
Confidence 589999999999998865 443332222233455789999999887764 34567788889999999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH----HHHHHHHHHhCCCcccHHHHHHHHHhhc----C--------ChHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMK----SRAIYEDLRSQNVTLNIYVFNSLMNVNA----H--------DLKF 307 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~g~~~~~~~~~~ll~~~~----~--------~~~~ 307 (651)
|+...+. .|+......+..+|.+.+++.+ |.+++.... -+.+.+-+++.... + -..-
T Consensus 100 Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~p-----k~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 100 YERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFP-----KRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred HHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----cccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 9999874 4777777777888888887754 555555333 24555555555422 1 1234
Q ss_pred HHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH-HHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHH
Q 006303 308 TLEVYKNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE-VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV 385 (651)
Q Consensus 308 a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 385 (651)
|.+.++.+.+.+ ---+..-...-...+...|++++|.+++.. ..... ...+...-+.-+..+...++|.+..++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l----~~~~~~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKL----TSANLYLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhc----cccchHHHHHHHHHHHHhcChHHHHHH
Confidence 677777776654 222222333344566678999999999943 32210 233444455667888899999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHhc
Q 006303 386 KEDMLSAGVTPNTITWSSLINACA----------------NAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA---CVEA 446 (651)
Q Consensus 386 ~~~m~~~~~~~~~~~~~~ll~~~~----------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~---~~~~ 446 (651)
-.++...|.. | |...+..+. ..+..+...+...+..... ..++ |-+-+.+ +..-
T Consensus 249 ~~~Ll~k~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~-~Rgp--~LA~lel~kr~~~~ 321 (932)
T KOG2053|consen 249 SSRLLEKGND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK-SRGP--YLARLELDKRYKLI 321 (932)
T ss_pred HHHHHHhCCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc-ccCc--HHHHHHHHHHhccc
Confidence 9999988633 2 222222111 1122233333333322221 1111 2222222 2345
Q ss_pred CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc-cccCCCH---------H
Q 006303 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR-FSFKPTT---------T 516 (651)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------~ 516 (651)
|+.+++.-.|-+ +-+..+....+.......+.--+. ..++.. .+..++. .
T Consensus 322 gd~ee~~~~y~~--kfg~kpcc~~Dl~~yl~~l~~~q~------------------~~l~~~l~~~~~~~s~~~k~l~~h 381 (932)
T KOG2053|consen 322 GDSEEMLSYYFK--KFGDKPCCAIDLNHYLGHLNIDQL------------------KSLMSKLVLADDDSSGDEKVLQQH 381 (932)
T ss_pred CChHHHHHHHHH--HhCCCcHhHhhHHHhhccCCHHHH------------------HHHHHHhhccCCcchhhHHHHHHH
Confidence 677765444422 111111111110000000000000 000000 0011221 2
Q ss_pred HHHHHHHHHhh-----cHHHHHHHHHHHH---HcC------CCCcHH---------HHHHHHHHHhcCCChH---HHHHH
Q 006303 517 TYNILMKACCT-----DYYRVKALMNEMR---TVG------LSPNHI---------SWTILIDACGGSGNVE---GALQI 570 (651)
Q Consensus 517 ~~~~ll~~~~~-----~~~~a~~~~~~~~---~~~------~~p~~~---------~~~~li~~~~~~g~~~---~A~~~ 570 (651)
+.+..+...++ +.+....++.+.. +.| +-|+.. +.+.|++.|.+.++.. +|+-+
T Consensus 382 ~c~l~~~rl~G~~~~l~ad~i~a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~L 461 (932)
T KOG2053|consen 382 LCVLLLLRLLGLYEKLPADSILAYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITL 461 (932)
T ss_pred HHHHHHHHHhhccccCChHHHHHHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 23333333333 2344444443332 223 233432 2468888999998876 34445
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 571 LKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 571 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
++.-.... +-|..+--.+|..|+-.|-+..|.++|+-|--..++-|...+. +.+-+.-.|++..+...+.-.
T Consensus 462 LE~glt~s-~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~-~~~~~~t~g~~~~~s~~~~~~ 533 (932)
T KOG2053|consen 462 LENGLTKS-PHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDTLGHL-IFRRAETSGRSSFASNTFNEH 533 (932)
T ss_pred HHHHhhcC-CccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhccchHH-HHHHHHhcccchhHHHHHHHH
Confidence 55554432 2244445578899999999999999999997666777766553 445556678887776654443
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00092 Score=59.13 Aligned_cols=130 Identities=14% Similarity=0.005 Sum_probs=112.5
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.|......++....+.|++..|...+++.... -++|...|+.+..+|.+.|++++|..-|.+..+... -+...+
T Consensus 98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~-~~p~~~ 171 (257)
T COG5010 98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP-NEPSIA 171 (257)
T ss_pred ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc-CCchhh
Confidence 46667777899999999999999999999874 478899999999999999999999999999998643 366778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+.+.-.+.-.|+.+.|..++......+ .-+..+-..+.-+....|++++|.++...
T Consensus 172 nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 172 NNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred hhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 888888999999999999999998875 44677778888888999999999988764
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00024 Score=59.30 Aligned_cols=109 Identities=7% Similarity=-0.106 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
..+|++..+ +.|+. +..+...+...|++++|...|+.+.... +.+...|..+..++.+.|++++|...|++
T Consensus 13 ~~~~~~al~------~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~ 83 (144)
T PRK15359 13 EDILKQLLS------VDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGH 83 (144)
T ss_pred HHHHHHHHH------cCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 456666665 34543 5567888899999999999999999875 34788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+.+ +.+...+..+..++.+.|++++|...|+.....
T Consensus 84 Al~l~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 84 ALMLD-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 99875 567788899999999999999999999987754
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.11 E-value=6e-06 Score=49.16 Aligned_cols=33 Identities=27% Similarity=0.639 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006303 584 VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616 (651)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 616 (651)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 456677777777777777777777777666665
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0076 Score=58.42 Aligned_cols=119 Identities=16% Similarity=0.130 Sum_probs=91.2
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN-TITWSSLINACAN 410 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~ 410 (651)
..+...|++++|+..++.+... .+-|...+......+.+.++.++|.+.++++... .|+ ....-.+..++.+
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-----~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~ 386 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-----QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHh
Confidence 3445678888888888887763 2344555566677888889999999999888876 344 5566677888888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.|++.+|+.+++...... +.++..|..|..+|...|+..++..-..+
T Consensus 387 ~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 387 GGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred cCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 899888888888887765 66788888888899888888888766654
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.016 Score=55.64 Aligned_cols=457 Identities=13% Similarity=0.050 Sum_probs=246.9
Q ss_pred HhhhccCChHHHHHHHHHHHHhcC-ChhHHHhhhhHHHH-HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMV-ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~-~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
-.+.+++++.+|+.+|.+....-. .|..+ ..+++ +.++.+| -..+.+.-...+....+. .|.. .+-.
T Consensus 14 f~Lqkq~~~~esEkifskI~~e~~~~~f~l----keEvl~grilnAf-fl~nld~Me~~l~~l~~~--~~~s-~~l~--- 82 (549)
T PF07079_consen 14 FILQKQKKFQESEKIFSKIYDEKESSPFLL----KEEVLGGRILNAF-FLNNLDLMEKQLMELRQQ--FGKS-AYLP--- 82 (549)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhcchHHH----HHHHHhhHHHHHH-HHhhHHHHHHHHHHHHHh--cCCc-hHHH---
Confidence 345678999999999999877622 22222 23444 3444444 455566666666666653 2322 1222
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
+..+...|. .+.+..|++.+......-........-..+-..+ .+-..-+..++++...|+
T Consensus 83 -LF~~L~~Y~-~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~-----------------~df~l~~i~a~sLIe~g~ 143 (549)
T PF07079_consen 83 -LFKALVAYK-QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLF-----------------SDFFLDEIEAHSLIETGR 143 (549)
T ss_pred -HHHHHHHHH-hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHh-----------------hHHHHHHHHHHHHHhcCC
Confidence 333333443 4888888888876554311111111001110000 111223345677778888
Q ss_pred HHHHHHHHHHHHhcCCC----CcHHhHHHHHHHHHhc--------CC-------HHHHHHHHHHHHhC------CCcccH
Q 006303 237 LVSALRAYDASKKHLSS----PNMYICRTIIDVCGIC--------GD-------YMKSRAIYEDLRSQ------NVTLNI 291 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~--------g~-------~~~a~~~~~~~~~~------g~~~~~ 291 (651)
+.+++.+++++...-.+ -+..+|+.++-.+++. .. ++.+.-...+|... .+.|..
T Consensus 144 f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~pee 223 (549)
T PF07079_consen 144 FSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEE 223 (549)
T ss_pred cchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHH
Confidence 88888888877765443 4677777655444432 11 11122222222211 223444
Q ss_pred HHHHHHHHhhc----CChHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 292 YVFNSLMNVNA----HDLKFTLEVYKNMQKLGVMADMA-SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 292 ~~~~~ll~~~~----~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
..+..++.... ....--.+++......-+.|+.. ....|...+.. +.+++..+.+.+....-...-+-=..++
T Consensus 224 eL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F 301 (549)
T PF07079_consen 224 ELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRF 301 (549)
T ss_pred HHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 44444444322 12333344444444444556643 34445555544 5566666655554321000001124468
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH-------HHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHH-
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS-------LINACAN----AGLVEQAMHLFEEMLQAGCEPNSQ- 434 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-------ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~- 434 (651)
..++....+.++...|.+.+..+... .|+...-.. +-+..+. .-+..+-+.+++.....++ |..
T Consensus 302 ~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~Di--DrqQ 377 (549)
T PF07079_consen 302 GNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDI--DRQQ 377 (549)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcc--cHHH
Confidence 88888899999999999998887754 333322111 1122221 1123334455555554432 221
Q ss_pred HHHHHHH---HHHhcCC-hhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 435 CCNILLQ---ACVEACQ-FDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 435 ~~~~ll~---~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
....|+. -+-+.|. -++|+++++.+..-.
T Consensus 378 Lvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft----------------------------------------------- 410 (549)
T PF07079_consen 378 LVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT----------------------------------------------- 410 (549)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----------------------------------------------
Confidence 2222333 3444555 788888888776431
Q ss_pred cCCCHHHHHHHHH----HHhh-----cHHHHHHHHHHHHHcCCCC----cHHHHHHHHHH--HhcCCChHHHHHHHHHHH
Q 006303 511 FKPTTTTYNILMK----ACCT-----DYYRVKALMNEMRTVGLSP----NHISWTILIDA--CGGSGNVEGALQILKIMR 575 (651)
Q Consensus 511 ~~~~~~~~~~ll~----~~~~-----~~~~a~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~~~~~~~~ 575 (651)
.-|..+-|.+.. +|.. ...+-..+-+-+.+.|+.| +...-|.|.++ +...|++.++.-.-.-+.
T Consensus 411 -~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~ 489 (549)
T PF07079_consen 411 -NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT 489 (549)
T ss_pred -cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 223333333332 2221 2344455555666778877 44455666655 567899999987766666
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 576 EDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 576 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
+ +.|++.+|..+.-++....++++|..++..+ +||..++++=+.
T Consensus 490 ~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~dskvq 533 (549)
T PF07079_consen 490 K--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDSKVQ 533 (549)
T ss_pred H--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHHHHH
Confidence 6 6899999999999999999999999999876 677777766544
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00046 Score=57.30 Aligned_cols=106 Identities=8% Similarity=0.000 Sum_probs=82.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+......+...+...|++++|.+.|+.+... .+.+...+..+...+...|++++|..+++.....+ +.+...+.
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~ 89 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY-----DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYF 89 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHH
Confidence 3455666777888889999999999888763 24467788888889999999999999999887765 34677777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
.+..++...|+++.|...|+...+.. |+...+
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 90 HAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 88888899999999999999888763 444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.3e-05 Score=48.07 Aligned_cols=34 Identities=44% Similarity=0.707 Sum_probs=31.8
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCH
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMSPDV 583 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 583 (651)
+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 7999999999999999999999999999999973
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=1.7e-05 Score=47.21 Aligned_cols=33 Identities=33% Similarity=0.740 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC
Q 006303 549 ISWTILIDACGGSGNVEGALQILKIMREDGMSP 581 (651)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p 581 (651)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 589999999999999999999999999999887
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00051 Score=57.02 Aligned_cols=99 Identities=10% Similarity=0.056 Sum_probs=85.1
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+......+...+...|++++|...|+.+...+ +.+...+..+..++.+.|++++|..+++...+.+ +.+...+..+..
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~ 93 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAE 93 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHH
Confidence 44567778888999999999999999998865 3477888899999999999999999999998875 556777888888
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+|...|++++|...|+.....
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 94 CLLALGEPESALKALDLAIEI 114 (135)
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999987764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.013 Score=51.79 Aligned_cols=188 Identities=12% Similarity=0.084 Sum_probs=129.5
Q ss_pred cCCHHHHHHHHHHHHhc---C-CCCcHHh-HHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHH
Q 006303 234 KRDLVSALRAYDASKKH---L-SSPNMYI-CRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKF 307 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~ 307 (651)
..+.++.++++.++... | ..++.++ |..++-+....|+.+.|..+++.+..+-.. +.+.-..+++--..|.+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~ 104 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKE 104 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhh
Confidence 35667777777766542 2 3355443 445555666778888888888887765321 1222333333334478888
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
|.++++.+.+.. +.|..++-.-+...-..|+-.+|++-+....+. +..|...|.-+...|...|+++.|.-+++
T Consensus 105 A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-----F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 105 AIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-----FMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred HHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-----hcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 899998888876 456777777777777778877888877776654 67899999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006303 388 DMLSAGVTPNTITWSSLINACANAG---LVEQAMHLFEEMLQAG 428 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~ 428 (651)
+++-..+ -+...+..+...+.-.| +.+.+.++|.+..+..
T Consensus 179 E~ll~~P-~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLLIQP-FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHHcCC-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9987632 24444555555444333 4677889999888764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0004 Score=52.61 Aligned_cols=79 Identities=16% Similarity=0.354 Sum_probs=64.5
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 552 TILIDACGGSGNVEGALQILKIMREDGM-SPDVVAYTTAIKVCVRSK--------RLKQAFSLFEEMKHYQIQPNLVTYI 622 (651)
Q Consensus 552 ~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (651)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+|+.|...+++|+..||+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 4455566666889999999999999888 889999998888877653 2446788999999999999999999
Q ss_pred HHHHHHHh
Q 006303 623 TLLRARSR 630 (651)
Q Consensus 623 ~l~~~~~~ 630 (651)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99998765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0059 Score=57.85 Aligned_cols=69 Identities=14% Similarity=0.073 Sum_probs=37.1
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
....|...+..|...|++++|...|.+.......-... ......+...+..+ +..++++|+..+++..+
T Consensus 34 Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~--~~Aa~~~~~Aa~~~-k~~~~~~Ai~~~~~A~~ 102 (282)
T PF14938_consen 34 AADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDK--FEAAKAYEEAANCY-KKGDPDEAIECYEKAIE 102 (282)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-H--HHHHHHHHHHHHHH-HHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHH-HhhCHHHHHHHHHHHHH
Confidence 46677788888888888888888888775542111100 00123333333333 33366666666665554
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.034 Score=53.32 Aligned_cols=89 Identities=7% Similarity=0.064 Sum_probs=63.9
Q ss_pred CCCCCCCcccccchhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcC-ChhHHHhhhhHHHHHhHHHHhh
Q 006303 46 LSSIPTVHSSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSI 124 (651)
Q Consensus 46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~ 124 (651)
..|..+.+...+.+.+.+..+|.+ ...|-.|++.+...|..++..+++++|..--. -|..|.. -++.-.
T Consensus 18 ae~~~~i~~D~lrLRerIkdNPtn-I~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~l---------y~s~EL 87 (660)
T COG5107 18 AEPSDNIHGDELRLRERIKDNPTN-ILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRL---------YMSGEL 87 (660)
T ss_pred cCcccCCCchHHHHHHHhhcCchh-HHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHH---------Hhcchh
Confidence 335556666667788888888988 99999999999999999999999999986521 2222211 122233
Q ss_pred hhcChhHHHHHHHHHHHcCC
Q 006303 125 REGRIDCVVGVLKKLNELGV 144 (651)
Q Consensus 125 ~~g~~~~a~~~l~~~~~~~~ 144 (651)
...++..++.+|.+-+..-+
T Consensus 88 A~~df~svE~lf~rCL~k~l 107 (660)
T COG5107 88 ARKDFRSVESLFGRCLKKSL 107 (660)
T ss_pred hhhhHHHHHHHHHHHHhhhc
Confidence 46788888888887776433
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.02 Score=55.56 Aligned_cols=144 Identities=13% Similarity=0.060 Sum_probs=115.0
Q ss_pred HHHHHHHh-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHH
Q 006303 293 VFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIV 370 (651)
Q Consensus 293 ~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~ 370 (651)
-|..-+.. ..++++.|+..++.+...- +-|+.-+......+.+.++..+|.+.++.+.. ..|+ ...+-.+.
T Consensus 309 ~YG~A~~~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~------l~P~~~~l~~~~a 381 (484)
T COG4783 309 QYGRALQTYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALA------LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCCccHHHHHHH
Confidence 34444443 3488999999999988762 44666667778899999999999999999998 4566 56677889
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
.+|.+.|+..+|+.+++...... +-|...|..|..+|...|+..++.....+. |...|+++
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~~G~~~ 442 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YALAGRLE 442 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHhCCCHH
Confidence 99999999999999999988774 448999999999999999998887766554 45678888
Q ss_pred HHHHHHHHhhhc
Q 006303 451 RAFRLFRSWTLS 462 (651)
Q Consensus 451 ~a~~~~~~~~~~ 462 (651)
.|+..+....+.
T Consensus 443 ~A~~~l~~A~~~ 454 (484)
T COG4783 443 QAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHh
Confidence 888887766544
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.0013 Score=55.16 Aligned_cols=130 Identities=14% Similarity=0.137 Sum_probs=91.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH--HHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWS 402 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 402 (651)
..|..++..+ ..++...+...++.+.... +..+......-.+...+...|++++|...|+........++. ....
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l 89 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARL 89 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHH
Confidence 3455555555 4788888888888887621 101111234445668888999999999999999987533322 2445
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
.+...+...|++++|+..++..... ......+....++|.+.|++++|...|+..
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 5678888999999999999775433 334556777888999999999999998763
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00043 Score=67.63 Aligned_cols=126 Identities=13% Similarity=0.136 Sum_probs=105.8
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
+.+.+......+++.+....+++++..++-......... ..-..+..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~--~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~ 138 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCS--YLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN 138 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccc--cccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence 445677788888888888888999999888887632122 222335569999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
.+++.||+.+.+.|++..|.++..+|..++...+..++...+.+|.+.
T Consensus 139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999888778888888888887776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=64.37 Aligned_cols=125 Identities=12% Similarity=0.114 Sum_probs=101.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
...|+..+...++++.|.++|+++.+ ..|+ ....++..+...++-.+|.+++++.+... +.+......-..
T Consensus 172 v~~Ll~~l~~t~~~~~ai~lle~L~~------~~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 172 VDTLLKYLSLTQRYDEAIELLEKLRE------RDPE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAE 242 (395)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHh------cCCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34566667778899999999999986 2344 44568888888899999999999999763 336777777778
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.|.+.++++.|+.+.+++.+.. +-+..+|..|..+|.+.|+++.|+..++.+..
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 8999999999999999999873 33445899999999999999999999987653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.77 E-value=3e-05 Score=44.87 Aligned_cols=29 Identities=21% Similarity=0.465 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g 613 (651)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.001 Score=55.85 Aligned_cols=131 Identities=14% Similarity=0.080 Sum_probs=76.3
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH-HHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK-FASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~-~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...|..++..+. .++...+...++.+... .|++ +. ..+.-.++..+...|++++|...|+++.+.. |+..
T Consensus 12 ~~~y~~~~~~~~-~~~~~~~~~~~~~l~~~--~~~s~ya----~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~--~d~~ 82 (145)
T PF09976_consen 12 SALYEQALQALQ-AGDPAKAEAAAEQLAKD--YPSSPYA----ALAALQLAKAAYEQGDYDEAKAALEKALANA--PDPE 82 (145)
T ss_pred HHHHHHHHHHHH-CCCHHHHHHHHHHHHHH--CCCChHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCHH
Confidence 445666666663 77778888888888877 4443 32 2222345666777888888888888888754 3221
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
... -..++....+...|++++|+..++...... .. +..+..+.+
T Consensus 83 l~~---~a~l~LA~~~~~~~~~d~Al~~L~~~~~~~---~~------------------------------~~~~~~~Gd 126 (145)
T PF09976_consen 83 LKP---LARLRLARILLQQGQYDEALATLQQIPDEA---FK------------------------------ALAAELLGD 126 (145)
T ss_pred HHH---HHHHHHHHHHHHcCCHHHHHHHHHhccCcc---hH------------------------------HHHHHHHHH
Confidence 111 112223334555677777777775532111 11 133445666
Q ss_pred HHhhcCCHHHHHHHHHH
Q 006303 230 EFGKKRDLVSALRAYDA 246 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~ 246 (651)
+|.+.|++++|+..|+.
T Consensus 127 i~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 127 IYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHCCCHHHHHHHHHH
Confidence 77777777777777765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0016 Score=63.44 Aligned_cols=121 Identities=12% Similarity=0.108 Sum_probs=62.8
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCCh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 305 (651)
+|+..+...++++.|+.+|+++.+.. |+ ....+.+.+...++-.+|++++++.....
T Consensus 174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~------------------- 230 (395)
T PF09295_consen 174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN------------------- 230 (395)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------------------
Confidence 34445555556666666666655532 32 22334444444455555555554444220
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALK 384 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~ 384 (651)
+.+...+..-...+.+.++++.|.++.+++... .|+ ..+|..|..+|...|+++.|+.
T Consensus 231 ---------------p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALl 289 (395)
T PF09295_consen 231 ---------------PQDSELLNLQAEFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALL 289 (395)
T ss_pred ---------------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHH
Confidence 123444444455556666666666666666652 333 3356666666666666666666
Q ss_pred HHHHHH
Q 006303 385 VKEDML 390 (651)
Q Consensus 385 ~~~~m~ 390 (651)
.++.+.
T Consensus 290 aLNs~P 295 (395)
T PF09295_consen 290 ALNSCP 295 (395)
T ss_pred HHhcCc
Confidence 555443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0041 Score=58.94 Aligned_cols=97 Identities=15% Similarity=0.133 Sum_probs=51.3
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCH--H
Q 006303 550 SWTILIDACGGSGNVEGALQILKIMREDGMS-----PDVV-AYTTAIKVCVRSKRLKQAFSLFEEMKHY--QIQPNL--V 619 (651)
Q Consensus 550 ~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~--~ 619 (651)
++..+...+.+.|++++|.++|++....-.. .+.. .|-..+-++...||...|.+.+++.... ++..+. .
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 4556666777777777777777777653221 1121 2222333555667777777777777632 233332 3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 620 TYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 620 ~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
....|+.++ ..|+.+....++.-|+.+
T Consensus 237 ~~~~l~~A~-~~~D~e~f~~av~~~d~~ 263 (282)
T PF14938_consen 237 FLEDLLEAY-EEGDVEAFTEAVAEYDSI 263 (282)
T ss_dssp HHHHHHHHH-HTT-CCCHHHHCHHHTTS
T ss_pred HHHHHHHHH-HhCCHHHHHHHHHHHccc
Confidence 444555554 445555555555555443
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00061 Score=66.61 Aligned_cols=120 Identities=18% Similarity=0.189 Sum_probs=100.3
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHc--CCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTV--GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..+......++..+.. +.+.+..++...... ...--..|..++|+.|.+.|..++++.++..=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 4456677777887764 678888888888764 222233455699999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
.||+.+.+.|++..|.++..+|...+...+..|+..-+.+|.+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 99999999999999999999999777778888888888888776
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0015 Score=49.57 Aligned_cols=79 Identities=11% Similarity=0.295 Sum_probs=63.7
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGV-TPNTITWSSLINACANAG--------LVEQAMHLFEEMLQAGCEPNSQCCN 437 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 437 (651)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. +.-..+.+++.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3455666666889999999999999888 889999999998877653 2446778888999999999999999
Q ss_pred HHHHHHHh
Q 006303 438 ILLQACVE 445 (651)
Q Consensus 438 ~ll~~~~~ 445 (651)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99987765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00064 Score=58.56 Aligned_cols=87 Identities=24% Similarity=0.317 Sum_probs=52.4
Q ss_pred cHHHHHHHHHHHhcC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----------------CCHHHHHHH
Q 006303 547 NHISWTILIDACGGS-----GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRS----------------KRLKQAFSL 605 (651)
Q Consensus 547 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~----------------g~~~~A~~~ 605 (651)
+-.+|..+++.|.+. |.++=....+..|.+.|+.-|..+|+.|++.+=+. .+.+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 444444444444322 33444444455555555555555555555444321 234668888
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 606 FEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 606 ~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
+++|...|+-||..|+..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 8888888888888888888888877665
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.63 E-value=6.6e-05 Score=43.41 Aligned_cols=31 Identities=32% Similarity=0.581 Sum_probs=27.9
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 549 ISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.+|+.++++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3799999999999999999999999998764
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00072 Score=55.55 Aligned_cols=84 Identities=17% Similarity=0.118 Sum_probs=59.1
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
.+-+.|++++|..+|+-+.... |.+...|..|+..|...|++.+|...|... |+++..+..+..++...|+.+.
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~D--p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYD--AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHH
Confidence 4445799999999998887754 667777777777777777777777666553 5556666667777777777777
Q ss_pred HHHHHHHHHh
Q 006303 240 ALRAYDASKK 249 (651)
Q Consensus 240 a~~~~~~~~~ 249 (651)
|++.|+....
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 7776666554
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0039 Score=50.22 Aligned_cols=102 Identities=11% Similarity=-0.047 Sum_probs=75.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC--CCHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PNTITWS 402 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~ 402 (651)
.++..+...+.+.|++++|.+.|+.+...... .+.....+..+..++.+.|++++|...|+.+...... .....+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~ 80 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPK--STYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHH
Confidence 34566777788889999999999888763110 0112346667888899999999999999988865322 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++.+.|+.++|...++++.+..
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 77888888999999999999988874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.018 Score=52.80 Aligned_cols=183 Identities=8% Similarity=-0.012 Sum_probs=114.8
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
..+..+...|++++|+..|+.+... .|.+-. ...+...++..+.+.++++.|+..+++..+. .|+..... +
T Consensus 37 ~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~---a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~--~P~~~~~~--~ 107 (243)
T PRK10866 37 ATAQQKLQDGNWKQAITQLEALDNR--YPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNID--Y 107 (243)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CcCCCchH--H
Confidence 4455556789999999999999998 444311 2444567888899999999999999999984 45433111 1
Q ss_pred HHHHHHHHH--H---------------hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCC
Q 006303 156 KLLKNECQR--L---------------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVP 218 (651)
Q Consensus 156 ~~l~~~~~~--~---------------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 218 (651)
..+..+.+. + .+.....+|+..|++++... |++.. ..+|......+.
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S~y--------------a~~A~~rl~~l~ 171 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNSQY--------------TTDATKRLVFLK 171 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCChh--------------HHHHHHHHHHHH
Confidence 122222111 0 01122456777777777654 43321 112221111110
Q ss_pred CC-CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 219 RA-DILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 219 ~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
.. ..--..+...|.+.|++..|..-++.+.+.-.. ....+...+..+|...|..++|......+.
T Consensus 172 ~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 172 DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 00 011124677899999999999999999875321 235567788899999999999988776554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.0034 Score=47.92 Aligned_cols=94 Identities=20% Similarity=0.148 Sum_probs=54.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
+..+...+...|++++|...++.+.+. .+.+...+..+...+...+++++|.+.++....... .+..++..+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 76 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL-----DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGL 76 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHH
Confidence 334555556666666666666666542 122334555566666666666666666666655432 23345555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006303 407 ACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+...|+.+.|...+....+
T Consensus 77 ~~~~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 77 AYYKLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHHHHhHHHHHHHHHHHHc
Confidence 66666666666666665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0031 Score=59.47 Aligned_cols=142 Identities=10% Similarity=0.075 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC
Q 006303 434 QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP 513 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (651)
.+|..+++..-+.+..+.|..+|.+.++.+. ...
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~----------------------------------------------~~~ 35 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKR----------------------------------------------CTY 35 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC----------------------------------------------S-T
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCC----------------------------------------------CCH
Confidence 4677888888888888999999988764321 245
Q ss_pred CHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC---HHHHHHH
Q 006303 514 TTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPD---VVAYTTA 589 (651)
Q Consensus 514 ~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~---~~~~~~l 589 (651)
.+....+++..++ ++.+.|..||+...+. +..+...|...++.+.+.|+.+.|..+|++.+.. +.++ ...|..+
T Consensus 36 ~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~ 113 (280)
T PF05843_consen 36 HVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKF 113 (280)
T ss_dssp HHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHH
Confidence 6666777776664 5777799999998875 4557788889999999999999999999999875 3322 2488999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLL 625 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~ 625 (651)
+.-=.+.|+.+.+.++.+++.+. -|+...+..++
T Consensus 114 i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~ 147 (280)
T PF05843_consen 114 IEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS 147 (280)
T ss_dssp HHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence 99888999999999999988753 34433333333
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0066 Score=50.00 Aligned_cols=93 Identities=6% Similarity=-0.041 Sum_probs=66.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.+...+...|++++|.++|+.+... -+-+..-|-.|..++-..|++++|+..|.......+ -|...+-.+..++
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~-----Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~ 113 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIY-----DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence 3445556778888888888877763 233455667777777778888888888888777654 3667777777788
Q ss_pred HhcCCHHHHHHHHHHHHHc
Q 006303 409 ANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~ 427 (651)
...|+.+.|.+.|+..+..
T Consensus 114 L~lG~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 114 LACDNVCYAIKALKAVVRI 132 (157)
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 8888888888887776653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.19 Score=51.12 Aligned_cols=100 Identities=11% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+.....|++|.+.|..-.. ....+.++.+...+++-+.+...+|.+....-.+.+++.+.|.-++|.+.
T Consensus 805 ~fa~~~~We~A~~yY~~~~~----------~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a 874 (1189)
T KOG2041|consen 805 TFAEMMEWEEAAKYYSYCGD----------TENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEA 874 (1189)
T ss_pred HHHHHHHHHHHHHHHHhccc----------hHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHH
Confidence 34445666666666654211 23355556666666666667777777777777778888888887777776
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
|-+-.. |. +-+..|...++|.+|.++-+..
T Consensus 875 ~Lr~s~----pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 875 YLRRSL----PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred HHhccC----cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 654332 32 2344566667777777665543
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.013 Score=55.31 Aligned_cols=138 Identities=16% Similarity=0.052 Sum_probs=87.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc-CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH----CCC-CCCH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAK-GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS----AGV-TPNT 398 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~----~~~-~~~~ 398 (651)
..|..|.+.|.-.|+++.|+...+.-..+... |.-..-...+..+.++++-.|+++.|.+.|+.... .|- ....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 45666777777778888888766654432211 21112334667778888888888888887766542 221 1233
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+...|.+.|.-..++++|+.++.+-..- +..-....|..|..+|...|..++|+...+.-+..
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45566777777777888888887654331 11223456777888888888888887776654443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0052 Score=53.12 Aligned_cols=50 Identities=14% Similarity=0.195 Sum_probs=36.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKH 352 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 352 (651)
.+-+-|++++++|...|+-||..++..|++.+.+.+. ..+..++.-.|.+
T Consensus 117 ~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmpk 167 (228)
T PF06239_consen 117 RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMPK 167 (228)
T ss_pred HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 3567789999999999999999999999999876654 3334444444444
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0033 Score=47.98 Aligned_cols=95 Identities=17% Similarity=0.177 Sum_probs=78.7
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.+..+...+...|++++|..+++.+.+.. +.+...+..+...+...+++++|.+.++...+.. +.+...+..+...+.
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~ 79 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYY 79 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHH
Confidence 35567778888999999999999998764 2345778888999999999999999999998865 445567888888999
Q ss_pred hcCChhHHHHHHHHhhh
Q 006303 445 EACQFDRAFRLFRSWTL 461 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~ 461 (651)
..|+++.|...+.....
T Consensus 80 ~~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 80 KLGKYEEALEAYEKALE 96 (100)
T ss_pred HHHhHHHHHHHHHHHHc
Confidence 99999999999987654
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0028 Score=51.08 Aligned_cols=105 Identities=10% Similarity=-0.022 Sum_probs=75.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+-.++..+...|++++|+..|+.+... .|+... ...+...++..+...|+++.|+..|+++... .|+...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~ 74 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK--YPKSTY---APNAHYWLGEAYYAQGKYADAAKAFLAVVKK--YPKSPK 74 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccc---cHHHHHHHHHHHHhhccHHHHHHHHHHHHHH--CCCCCc
Confidence 345677888888999999999999999887 443210 1334456778899999999999999999874 343221
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.. ..+...+..+.+.|+.++|...++++....
T Consensus 75 ~~---~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 75 AP---DALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cc---HHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 11 223333445566899999999999988765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.15 Score=48.72 Aligned_cols=110 Identities=16% Similarity=0.192 Sum_probs=83.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
.+.+..+.-+...|+...|.++-.+.. -|+..-|-..+.+|+..++|++-.++... +-++.-|...
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk--------v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepF 243 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK--------VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPF 243 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC--------CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHH
Confidence 355566777778888888888877664 37888899999999999999887775432 1244678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 405 INACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+.+|.+.|...+|..+..++ + +..-+..|.++|++.+|.+.--+
T Consensus 244 v~~~~~~~~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 244 VEACLKYGNKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHHCCCHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999999998888873 1 24567788899999988776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.00067 Score=50.57 Aligned_cols=82 Identities=16% Similarity=0.190 Sum_probs=43.1
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
.|+++.|+.+++++...... .++...+..+..+|.+.|++++|..++++ ...+. .+......+..+|.+.|++++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~e 76 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEE 76 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---THHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHH
T ss_pred CccHHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHH
Confidence 45666777777766653200 01333444466666677777777766666 22111 122333344666666667776
Q ss_pred HHHHHHH
Q 006303 417 AMHLFEE 423 (651)
Q Consensus 417 a~~~~~~ 423 (651)
|+++|++
T Consensus 77 Ai~~l~~ 83 (84)
T PF12895_consen 77 AIKALEK 83 (84)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 6666654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0021 Score=63.04 Aligned_cols=88 Identities=11% Similarity=0.066 Sum_probs=53.4
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++++|+..|++++... |.+.. ++..+..+|.+.|++++|+..+
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~--P~~~~------------------------------a~~~~a~~~~~~g~~~eAl~~~ 59 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLD--PNNAE------------------------------LYADRAQANIKLGNFTEAVADA 59 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CCCHH------------------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 344689999999999988754 44444 4444555555556666666666
Q ss_pred HHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 245 DASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 245 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
+.+++... .+...|..+..+|...|++++|+..|+...+.
T Consensus 60 ~~Al~l~P-~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 60 NKAIELDP-SLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHhCc-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 66655321 23445555556666666666666666665554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00047 Score=51.42 Aligned_cols=81 Identities=20% Similarity=0.317 Sum_probs=61.1
Q ss_pred ccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006303 376 AKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
.|+++.|+.+++++.+.... ++...+..+..++.+.|++++|..+++. .+.+ ..+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 58899999999999987432 2455566689999999999999999988 3332 1233444456888999999999999
Q ss_pred HHHH
Q 006303 455 LFRS 458 (651)
Q Consensus 455 ~~~~ 458 (651)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 9875
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0011 Score=46.56 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=49.3
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~--~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQ--DPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCC--STT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 567788899999999999999998 676 3566677788899999999999999999873
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.012 Score=46.74 Aligned_cols=62 Identities=15% Similarity=0.090 Sum_probs=42.1
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~ 184 (651)
.....+-..|+.++|+.+|++..+.|+.... ....++.....+...|++++|+.++++....
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~ 67 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE 67 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3445566778888888888888876655432 3345566666666778888888888777653
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0078 Score=56.78 Aligned_cols=94 Identities=14% Similarity=0.152 Sum_probs=46.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CcccHHHHHHHHHhhc-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLNIYVFNSLMNVNA-HDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
.+|-.+++...+.+..+.|..+|.+.++.+ ...+++...++|..++ ++.+.|..+|+...+. .+.+...|...++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 356666666666666777777777766542 2233444444443332 3444455555544432 223444455555555
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006303 335 CLAGNTVLAQEIYGEVK 351 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~ 351 (651)
.+.|+.+.|..+|+...
T Consensus 81 ~~~~d~~~aR~lfer~i 97 (280)
T PF05843_consen 81 IKLNDINNARALFERAI 97 (280)
T ss_dssp HHTT-HHHHHHHHHHHC
T ss_pred HHhCcHHHHHHHHHHHH
Confidence 55555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.014 Score=54.00 Aligned_cols=105 Identities=9% Similarity=-0.009 Sum_probs=79.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...|......+.+.|++++|+..|+.+++. .|+.. ....++..++..|...|++++|+..|+++.+. .|+..
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~---~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~--yP~s~- 214 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDST---YQPNANYWLGQLNYNKGKKDDAAYYFASVVKN--YPKSP- 214 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCc---chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCc-
Confidence 556666666667789999999999999998 55531 12456678899999999999999999999974 34332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.....+.+....+...|+.++|...|++++...
T Consensus 215 --~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 215 --KAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred --chhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 233445555556667899999999999998755
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.013 Score=57.59 Aligned_cols=92 Identities=12% Similarity=0.069 Sum_probs=64.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
...+...|++++|++.|+++.+. .+.+...|..+..+|...|++++|+..+++++.... .+...|..+..+|..
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~-----~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDL-----DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHH
Confidence 34455667778888887777763 234556677777777777888888888777776542 256667777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 006303 411 AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~ 428 (651)
.|++++|...|++..+.+
T Consensus 83 lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 83 LEEYQTAKAALEKGASLA 100 (356)
T ss_pred hCCHHHHHHHHHHHHHhC
Confidence 888888888887777653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.035 Score=49.59 Aligned_cols=181 Identities=9% Similarity=-0.005 Sum_probs=106.3
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+=..+..+...|++.+|+..|+.+... .|.+- ....+...++.++.+.|+++.|+..+++.++. .|+...
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~--~P~s~---~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~ 77 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDR--YPNSP---YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPK 77 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH---TTST---THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCh---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcc
Confidence 444555667777899999999999999988 44321 13556678888999999999999999999984 443321
Q ss_pred cchhhHHHHHHHHHH----------hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC
Q 006303 151 DGSGFKLLKNECQRL----------LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~----------~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (651)
.. ...+..+.+.+ .+.+...+|+..|+.++... |++.. ..+|......+...
T Consensus 78 ~~--~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y--P~S~y--------------~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 78 AD--YALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY--PNSEY--------------AEEAKKRLAELRNR 139 (203)
T ss_dssp HH--HHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH---TTSTT--------------HHHHHHHHHHHHHH
T ss_pred hh--hHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC--cCchH--------------HHHHHHHHHHHHHH
Confidence 11 11222222221 22344567777777777654 33322 12222211111000
Q ss_pred -CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHH
Q 006303 221 -DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSR 276 (651)
Q Consensus 221 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 276 (651)
..--..++..|.+.|.+..|..-++.+.+.-... ...+...++.+|.+.|..+.+.
T Consensus 140 la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 140 LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 0112236788999999999999999998853221 1345677788888888877443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.095 Score=49.90 Aligned_cols=272 Identities=14% Similarity=0.072 Sum_probs=158.5
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+.++.+|..|+..+....+. .|+...+ +-+.+..+...|++++|.--.+.-+. +.+..........+++.
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~--~pd~a~y------y~nRAa~~m~~~~~~~a~~dar~~~r--~kd~~~k~~~r~~~c~~ 128 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDM--CPDNASY------YSNRAATLMMLGRFEEALGDARQSVR--LKDGFSKGQLREGQCHL 128 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHh--Cccchhh------hchhHHHHHHHHhHhhcccchhhhee--cCCCccccccchhhhhh
Confidence 45777888889888888874 4544221 22222233346777877766655443 23444455555666666
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHH-HHHHhcCCHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTII-DVCGICGDYMKSRAIYE 280 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~g~~~~a~~~~~ 280 (651)
..++..+|.+.++.- .++ ....++..++.+...... |.-..|..+- .++...|++++|.+.-.
T Consensus 129 a~~~~i~A~~~~~~~----~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 129 ALSDLIEAEEKLKSK----QAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred hhHHHHHHHHHhhhh----hhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 667766666665411 111 122233333333322221 2223333332 33455577777776665
Q ss_pred HHHhCCCcccHHHHHHHHHh----hcCChHHHHHHHHHHHHCCCCCCHHhH-------------HHHHHHHHhcCCHHHH
Q 006303 281 DLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKNMQKLGVMADMASY-------------NILLKACCLAGNTVLA 343 (651)
Q Consensus 281 ~~~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~-------------~~ll~~~~~~g~~~~a 343 (651)
..++... ...+..+++. +..+.+.+..-|++-+..+ |+...- ..-.+-..+.|.+..|
T Consensus 194 ~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A 268 (486)
T KOG0550|consen 194 DILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKA 268 (486)
T ss_pred HHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHH
Confidence 5554321 1222222332 3356666777776666543 332221 1122334578999999
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT--WSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~ 421 (651)
.+.|.+...+.... ..++...|........+.|+.++|+.-.+.....+ +... |..-..++...+++++|.+-|
T Consensus 269 ~E~Yteal~idP~n-~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD---~syikall~ra~c~l~le~~e~AV~d~ 344 (486)
T KOG0550|consen 269 YECYTEALNIDPSN-KKTNAKLYGNRALVNIRLGRLREAISDCNEALKID---SSYIKALLRRANCHLALEKWEEAVEDY 344 (486)
T ss_pred HHHHHHhhcCCccc-cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998865443 56777788888888899999999999888887642 2222 233334566678899999999
Q ss_pred HHHHHcC
Q 006303 422 EEMLQAG 428 (651)
Q Consensus 422 ~~~~~~~ 428 (651)
+...+..
T Consensus 345 ~~a~q~~ 351 (486)
T KOG0550|consen 345 EKAMQLE 351 (486)
T ss_pred HHHHhhc
Confidence 9887764
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.031 Score=48.49 Aligned_cols=86 Identities=15% Similarity=0.070 Sum_probs=62.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
...+..+...+...|++++|...|++....... .+ ....+..+...+.+.|++++|...+++...... -+...+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 110 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALN 110 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHH
Confidence 446677777888889999999999888763211 11 135678888888899999999999988887532 2456666
Q ss_pred HHHHHHHhcCC
Q 006303 403 SLINACANAGL 413 (651)
Q Consensus 403 ~ll~~~~~~g~ 413 (651)
.+...+...|+
T Consensus 111 ~lg~~~~~~g~ 121 (172)
T PRK02603 111 NIAVIYHKRGE 121 (172)
T ss_pred HHHHHHHHcCC
Confidence 77777777665
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=57.03 Aligned_cols=81 Identities=9% Similarity=-0.014 Sum_probs=50.3
Q ss_pred hcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHH
Q 006303 167 DSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALR 242 (651)
Q Consensus 167 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~ 242 (651)
+.+++.+|+..|.+.++.. |++.+++..-..+|++.|.++.|++-.+.. |....+|..|..+|...|++++|++
T Consensus 93 ~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~ 170 (304)
T KOG0553|consen 93 KNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIE 170 (304)
T ss_pred HhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHH
Confidence 3688888888888888744 666666666666666666666665544432 2223555555666666666666666
Q ss_pred HHHHHHh
Q 006303 243 AYDASKK 249 (651)
Q Consensus 243 ~~~~~~~ 249 (651)
.|++.++
T Consensus 171 aykKaLe 177 (304)
T KOG0553|consen 171 AYKKALE 177 (304)
T ss_pred HHHhhhc
Confidence 6555555
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.056 Score=46.87 Aligned_cols=90 Identities=14% Similarity=0.105 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
...+..+...+...|++++|...|++.......+. ...+..+...+.+.|++++|...+++..+.. +.+...+..+.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 113 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 44577777888889999999999998886543322 3577888888899999999999999888763 33455666666
Q ss_pred HHHHhcCChhHHH
Q 006303 441 QACVEACQFDRAF 453 (651)
Q Consensus 441 ~~~~~~g~~~~a~ 453 (651)
.+|...|+...+.
T Consensus 114 ~~~~~~g~~~~a~ 126 (172)
T PRK02603 114 VIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHcCChHhHh
Confidence 6777766655443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.045 Score=47.27 Aligned_cols=92 Identities=15% Similarity=0.094 Sum_probs=47.4
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
.|..+...+...|++++|+..|++.......+ ...++..+...+...|++++|...+++..... +.....+..+...
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i 115 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI 115 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence 34445555555566666666666555432111 12355556666666666666666666665542 2223344444444
Q ss_pred HH-------hcCChhHHHHHHH
Q 006303 443 CV-------EACQFDRAFRLFR 457 (651)
Q Consensus 443 ~~-------~~g~~~~a~~~~~ 457 (651)
+. +.|+++.|...++
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHH
Confidence 44 5556555544443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.024 Score=48.99 Aligned_cols=98 Identities=16% Similarity=0.056 Sum_probs=69.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...|..+...+...|++++|...|+....+... ......++..+...+...|++++|+..+++..... +....++..
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~--~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~ 111 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID--PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNN 111 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc--chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHH
Confidence 456677777888889999999999988764210 01123478888889999999999999999988753 223455666
Q ss_pred HHHHHH-------hcCCHHHHHHHHHHH
Q 006303 404 LINACA-------NAGLVEQAMHLFEEM 424 (651)
Q Consensus 404 ll~~~~-------~~g~~~~a~~~~~~~ 424 (651)
+...+. ..|+++.|...+++.
T Consensus 112 la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 112 MAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 666666 777877666665544
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.012 Score=48.73 Aligned_cols=93 Identities=10% Similarity=0.055 Sum_probs=67.8
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~ 230 (651)
++.+-.....+-+.|++++|..+|.-+...+ +.+...|..|+.++...+++++|...|... +.++........+
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC 114 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHH
Confidence 3333333444555799999999999888754 666677888888888888888888776653 5566777777788
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~ 249 (651)
|...|+.+.|+..|+...+
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888888888888877766
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.055 Score=55.66 Aligned_cols=66 Identities=17% Similarity=0.130 Sum_probs=51.4
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
.++..|..+.-.+...|++++|...+++... +.|+...|..+...+...|+.++|.+.+++.....
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~------L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAID------LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3556677666666667888888888888887 45777888888888888888888888888888764
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.063 Score=47.19 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=59.4
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc----CCC
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL----GVA 145 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~----~~~ 145 (651)
....|.....+|....++++|..-+....+-... .-+.++...++...+...-....+.+|..++++.... | .
T Consensus 30 aas~yekAAvafRnAk~feKakdcLlkA~~~yEn--nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G-s 106 (308)
T KOG1585|consen 30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKGYEN--NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG-S 106 (308)
T ss_pred hHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-C
Confidence 4678888899999999999999988777643111 1112223445555555555666677777777665543 2 2
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHH
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLE 182 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~ 182 (651)
|+. -..-+.-........++++|+.+|++..
T Consensus 107 pdt------AAmaleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 107 PDT------AAMALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred cch------HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 221 1112222333344556666666666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.021 Score=45.32 Aligned_cols=98 Identities=13% Similarity=0.061 Sum_probs=69.8
Q ss_pred HHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhh
Q 006303 76 DMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGF 155 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~ 155 (651)
.+...+-..|+.++|+.+|++.+..|..... ...++..+.+.+...|++++|+.+|++.... .|+......+
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l- 77 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----RRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAAL- 77 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHH-
Confidence 4556677789999999999999998765442 2456667889999999999999999999874 3442222112
Q ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 156 KLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 156 ~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
..+.. ..+...|+.++|++.+-..+.
T Consensus 78 ~~f~A--l~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 78 RVFLA--LALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHH--HHHHHCCCHHHHHHHHHHHHH
Confidence 22211 234457999999998876554
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.004 Score=44.24 Aligned_cols=64 Identities=13% Similarity=0.122 Sum_probs=55.8
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhc-ChhHHHHHHHHHHHc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~l~~~~~~ 142 (651)
...+..++..+...|++++|+..|++.++. .|+. ..++..++..+...| ++++|+..+++.++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--~p~~------~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--DPNN------AEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--STTH------HHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCC------HHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 567888999999999999999999999998 7773 556677788899999 799999999998873
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.93 E-value=0.32 Score=44.70 Aligned_cols=58 Identities=7% Similarity=-0.003 Sum_probs=39.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHY--QIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
.+.+-|.+.|.+..|..-++.+.+. +.+........++.++...|..++|.+..+++.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455677788888888878777742 333444566677778888888888777666553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.014 Score=52.94 Aligned_cols=98 Identities=17% Similarity=0.176 Sum_probs=69.6
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.+.+++++|+..|.+...+ .+-|.+.|..=..+|++.|.++.|++-.+..+..+. --..+|..|..+|...|
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~l-----~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp-~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIEL-----DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP-HYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHhc-----CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh-HHHHHHHHHHHHHHccC
Confidence 345677888888888888774 244556666777888888888888887777776532 24567888888888888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
++++|++.|++.++. .|+-.+|-.
T Consensus 164 k~~~A~~aykKaLel--dP~Ne~~K~ 187 (304)
T KOG0553|consen 164 KYEEAIEAYKKALEL--DPDNESYKS 187 (304)
T ss_pred cHHHHHHHHHhhhcc--CCCcHHHHH
Confidence 888888888877764 566555543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.1 Score=53.79 Aligned_cols=75 Identities=15% Similarity=0.041 Sum_probs=62.8
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITL 624 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 624 (651)
.+...|.++.-.+...|++++|...++++.+. .|+...|..+...|...|+.++|...+++... +.|...||...
T Consensus 418 ~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~~pt~~~~ 492 (517)
T PRK10153 418 VLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPGENTLYWI 492 (517)
T ss_pred CChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCchHHHH
Confidence 45677887777777789999999999999995 47889999999999999999999999999875 46777776443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0055 Score=43.35 Aligned_cols=63 Identities=16% Similarity=0.104 Sum_probs=46.8
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
.+.|++++|++.|+.+.+... -+..++..+..+|.+.|++++|.++++.+... .|+...|..+
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~--~~~~~~~~~l 64 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ--DPDNPEYQQL 64 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG--GTTHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCHHHHHHH
Confidence 457889999999999887532 26777888889999999999999999988876 3444444443
|
... |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.5 Score=45.25 Aligned_cols=59 Identities=15% Similarity=0.225 Sum_probs=33.1
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHh
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFG 232 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~ 232 (651)
.....|+.+-|..+++. .|. ...-+..+...|+.+.|+.---.-.+.+-+|..|+..-.
T Consensus 9 ~A~~~GR~~LA~~LL~~------Ep~----~~~qVplLL~m~e~e~AL~kAi~SgD~DLi~~vLl~L~~ 67 (319)
T PF04840_consen 9 KAYEEGRPKLATKLLEL------EPR----ASKQVPLLLKMGEDELALNKAIESGDTDLIYLVLLHLKR 67 (319)
T ss_pred HHHHcChHHHHHHHHHc------CCC----hHHHHHHHhcCCchHHHHHHHHHcCCccHHHHHHHHHHH
Confidence 44457888888887653 121 223455566677777776544444444455555555433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0065 Score=42.95 Aligned_cols=51 Identities=12% Similarity=0.042 Sum_probs=23.5
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
+.|++++|+++|+.+... .+-+...+..+..+|.+.|++++|..+++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR-----NPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH-----TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555555555554442 122344444455555555555555555555444
|
... |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.009 Score=41.77 Aligned_cols=56 Identities=18% Similarity=0.249 Sum_probs=28.8
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+.+.|++++|...|+++++.. +-+...+..+..++...|++++|...|+++.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34455555555555555555543 114445555555555555555555555555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0048 Score=45.14 Aligned_cols=68 Identities=15% Similarity=0.038 Sum_probs=54.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc--CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
...+..++..+...|++++|+..|++.++.. ..++ ......++.+++..+...|++++|++.+++..+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDD---HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTH---HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 6788999999999999999999999998762 1222 222366778999999999999999999998875
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.04 Score=50.42 Aligned_cols=113 Identities=9% Similarity=-0.047 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhc---CCHHHHHHH
Q 006303 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKK---RDLVSALRA 243 (651)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~---g~~~~a~~~ 243 (651)
.+..+.-++.-+..+ |.+...|..|+..|...|+.+.|...|.. .|+++..+..+.+++..+ ....++..+
T Consensus 138 ~~~l~a~Le~~L~~n--P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 138 MEALIARLETHLQQN--PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HHHHHHHHHHHHHhC--CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence 334444444444433 77777788888888888888888776655 366666666666655443 345567777
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
|++++..+. -|+.+...|...+...|++.+|...|+.|.+..
T Consensus 216 l~~al~~D~-~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 216 LRQALALDP-ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHhcCC-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 777776422 356666666777777788888888888777663
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.21 Score=47.52 Aligned_cols=300 Identities=14% Similarity=-0.005 Sum_probs=149.7
Q ss_pred HHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc----CCCcc-ccccc
Q 006303 78 ASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL----GVAPL-ELFDG 152 (651)
Q Consensus 78 ~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~----~~~~~-~~~~~ 152 (651)
..-+++.|+.+.-+..|+..++.|.+-- . ....++..+..+|.-.++|.+|++.-..=+.. |-+.- .-...
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl--~--tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssg 99 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDL--S--TLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSG 99 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHH--H--HHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccc
Confidence 4667899999999999999999876522 1 23556677888899999999998764432110 10000 00000
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHH----hcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLE----EFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (651)
.+-+++ .-.|.+++|+....+-+ +.|...-..-++..++..|...|+.-. ...|.+...++.=+
T Consensus 100 NLGNtl-------Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g-----~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 100 NLGNTL-------KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTG-----LEAPEEKGAFNAEV 167 (639)
T ss_pred cccchh-------hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccC-----CCChhhcccccHHH
Confidence 111111 11466777765543322 111111111112222222222211100 00010001111000
Q ss_pred HHHhhcCCHHHHHHHHHHHHh----cCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 229 REFGKKRDLVSALRAYDASKK----HLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~----~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
...++.|.+.|.+=++ .|-. .-..+|..|.+.|.-.|+++.|+...+.-+..
T Consensus 168 -----~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~i------------------ 224 (639)
T KOG1130|consen 168 -----TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEI------------------ 224 (639)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHH------------------
Confidence 0112233333332111 1100 11234555666666667777776655443211
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh-cCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEA-KGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
|.++=++.. ....+..|.+++.-.|+++.|.+.|+....+.. -|.-.........|.+.|.-..+++.|
T Consensus 225 ----a~efGDrAa------eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kA 294 (639)
T KOG1130|consen 225 ----AQEFGDRAA------ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKA 294 (639)
T ss_pred ----HHHhhhHHH------HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHH
Confidence 111111111 233566677778888888888888876544321 121123344566677777777888888
Q ss_pred HHHHHHHHHC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 383 LKVKEDMLSA-----GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 383 ~~~~~~m~~~-----~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
+.++.+-+.. ...-....+-.|..+|...|..++|+.+.+...+
T Consensus 295 I~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 295 ITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 8776553321 1122455677788888888888888877766554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.04 Score=46.24 Aligned_cols=123 Identities=15% Similarity=0.073 Sum_probs=72.1
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--CCcccc--chHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--LPVKEL--DEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
|..++.........++.+.++..++++.... ....+. ..|..-.... +... -..+...++..
T Consensus 6 F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~------------l~~~--~~~~~~~l~~~ 71 (146)
T PF03704_consen 6 FEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERER------------LREL--YLDALERLAEA 71 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHH------------HHHH--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHH------------HHHH--HHHHHHHHHHH
Confidence 3334443334444678888888888877542 111111 1122111111 1000 01345567778
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~ 292 (651)
+...|+++.|.+..+.+....+ -+...|..+|.+|...|+..+|.++|+.+.+ .|+.|+..
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP-~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDP-YDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHST-T-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HH
T ss_pred HHhccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHH
Confidence 8889999999999999998532 3788999999999999999999999998754 25555543
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.23 Score=41.81 Aligned_cols=133 Identities=14% Similarity=0.072 Sum_probs=100.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CCHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PNTI 399 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~ 399 (651)
.|+...--.|..++.+.|+..+|...|++.. .|.+..|....-.+.++....+++.+|...++.+.+.... .+..
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qal----sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd 161 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQAL----SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD 161 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHh----ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC
Confidence 4666666778899999999999999999987 4767778888889999999999999999999998876311 1223
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
+...+.+.+...|++.+|...|+..... -|+...-...-..+.+.|+.+++..-+..+
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 4556778889999999999999999876 455554444445566778776665444433
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.65 Score=43.89 Aligned_cols=59 Identities=8% Similarity=-0.040 Sum_probs=44.8
Q ss_pred hccCChHHHHHHHHHHHHhc--CChhHHHhhhhHHHHHhHHHHhhhhc-ChhHHHHHHHHHHHc
Q 006303 82 AKDGRLEEFAMIVESVVVSE--GNVSKFASMLSLEMVASGIVKSIREG-RIDCVVGVLKKLNEL 142 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~l~~~~~~ 142 (651)
.++|+++.|..++.++.... ..|+.... ....+.+++......+ +++.|..++++..+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~--La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEE--LARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHH--HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999886643 35554433 4556677777788888 999999999998774
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.08 Score=42.53 Aligned_cols=86 Identities=15% Similarity=0.121 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHHhcCCChHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 006303 547 NHISWTILIDACGGSGNVEGALQILKIMRE---------------DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK- 610 (651)
Q Consensus 547 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~~---------------~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~- 610 (651)
|..++.++|.++++.|+++....+++..=. ..+.|+..+..+++.+|+..|++..|+++++...
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 456788889999999999888888876421 1356889999999999999999999999999987
Q ss_pred HCCCCCCHHHHHHHHHHHHhcC
Q 006303 611 HYQIQPNLVTYITLLRARSRYG 632 (651)
Q Consensus 611 ~~g~~p~~~~~~~l~~~~~~~g 632 (651)
..+++.+..+|..|++=+...-
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~v~s 102 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAYVLS 102 (126)
T ss_pred HcCCCCCHHHHHHHHHHHHHhc
Confidence 6788889999999998554433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.071 Score=52.13 Aligned_cols=71 Identities=10% Similarity=0.024 Sum_probs=60.0
Q ss_pred CCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+|+. ...+..+..+|...|++++|+..|++.++. .|+.... ..++++++..|...|+.++|++.|++.++.
T Consensus 71 dP~~-a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA---~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 71 DVKT-AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEA---QAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3555 889999999999999999999999999998 6663211 134788899999999999999999999984
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.017 Score=40.97 Aligned_cols=62 Identities=15% Similarity=0.083 Sum_probs=31.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDML 390 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~ 390 (651)
+..|..+...+...|++++|+..|++..+. .+.+...|..+..+|...| ++++|+..+++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~-----~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL-----DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH-----STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 344555555555555555555555555542 1223344555555555555 4555555555444
|
... |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.72 Score=43.88 Aligned_cols=243 Identities=14% Similarity=0.053 Sum_probs=117.4
Q ss_pred chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhh----hCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 169 GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC----IVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 169 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
|++++|.+-|+.|.... ......+..|.-.-.+.|..+.|.++-+ ..|.-..++..++...|..|+++.|+++.
T Consensus 134 G~~~~Ar~kfeAMl~dP--EtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLv 211 (531)
T COG3898 134 GDYEDARKKFEAMLDDP--ETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLV 211 (531)
T ss_pred CchHHHHHHHHHHhcCh--HHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHH
Confidence 66666666666654311 1111112222222234555555555433 34555566666777777777777777777
Q ss_pred HHHHhcC-CCCcHH--hHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh----hcCChHHHHHHHHH
Q 006303 245 DASKKHL-SSPNMY--ICRTIIDVCGI---CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV----NAHDLKFTLEVYKN 314 (651)
Q Consensus 245 ~~~~~~~-~~~~~~--~~~~l~~~~~~---~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~----~~~~~~~a~~~~~~ 314 (651)
+.-.+.. +.++.. .-..|+.+-.. .-+...|.+.-.+..+. .||..-- .++.+ ..|+..++-.+++.
T Consensus 212 d~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPa-av~AAralf~d~~~rKg~~ilE~ 288 (531)
T COG3898 212 DAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPA-AVVAARALFRDGNLRKGSKILET 288 (531)
T ss_pred HHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchH-HHHHHHHHHhccchhhhhhHHHH
Confidence 6544332 223322 22233322111 12344444443333322 3332221 11111 22566666677777
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
+-+.. |.+..+. +..+.+.|+ .+..-++...++.. ++| +....-.+..+....|++..|..--+...+.
T Consensus 289 aWK~e--PHP~ia~--lY~~ar~gd--ta~dRlkRa~~L~s---lk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 289 AWKAE--PHPDIAL--LYVRARSGD--TALDRLKRAKKLES---LKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHhcC--CChHHHH--HHHHhcCCC--cHHHHHHHHHHHHh---cCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 76653 3333332 222334443 23333333333221 223 3445556666777777777776666655543
Q ss_pred CCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHc
Q 006303 394 VTPNTITWSSLINACAN-AGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~-~g~~~~a~~~~~~~~~~ 427 (651)
.|....|..|.+.-.. .|+-+++...+.+..+.
T Consensus 359 -~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 -APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 5666666666665443 37777777777776654
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.091 Score=44.09 Aligned_cols=71 Identities=18% Similarity=0.310 Sum_probs=50.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCC 436 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~ 436 (651)
....++..+...|++++|.++++.+.... +-|...|..+|.+|...|+...|.+.|+++.+ .|+.|+..+-
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 34456667778899999999999988764 34788899999999999999999999888754 4788877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.46 E-value=1.3 Score=45.49 Aligned_cols=56 Identities=13% Similarity=0.210 Sum_probs=33.6
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
+-+....-.|..++.+.|.-++|.+.|-+-- . |- .-+..|...+++.+|.++-+..
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s---~-pk-----aAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRS---L-PK-----AAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhcc---C-cH-----HHHHHHHHHHHHHHHHHHHHhc
Confidence 4455566667777777777777777664321 1 11 2345566667777776665543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.22 Score=45.77 Aligned_cols=102 Identities=16% Similarity=0.062 Sum_probs=83.9
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCCCCCC
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~~~~~ 397 (651)
+-|...|-.|...|...|+.+.|..-|.+..++ .+++...+..+..++... .+..++.++|++++..+. -|
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-----~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~-~~ 226 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-----AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDP-AN 226 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCC-cc
Confidence 457889999999999999999999999999986 345666666666665443 356788999999998753 37
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+...|...+...|++.+|...|+.|.+..
T Consensus 227 iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 227 IRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 7888888889999999999999999999875
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.46 Score=42.45 Aligned_cols=64 Identities=14% Similarity=0.081 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
......+..+...|++.+|++.|+.+....... -..+.-.++.++-+.|+++.|...++++.+.
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 334455667778888888888888888754321 2345666777888888888888888887765
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.016 Score=42.27 Aligned_cols=71 Identities=13% Similarity=-0.001 Sum_probs=50.7
Q ss_pred hHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 112 SLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 112 ~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
...++..++..|...|++++|+..|++..+. ..........+...+.+....+...|++++|++.+++..+
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3566788899999999999999999999875 1111111223455566666677778999999999888654
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.27 E-value=1.2 Score=42.90 Aligned_cols=260 Identities=10% Similarity=-0.047 Sum_probs=156.7
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
..++..|+..+....... |++...|..-...+...+++++|.--.+.. +...........++...++..+|.+.
T Consensus 62 ~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~ 139 (486)
T KOG0550|consen 62 QKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEAEEK 139 (486)
T ss_pred HhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHHHHH
Confidence 577888888888887755 778888888888888888887776543322 22223333344455555555555555
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHH---hhcCChHHHHHHHHHHHHCC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN---VNAHDLKFTLEVYKNMQKLG 319 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~---~~~~~~~~a~~~~~~m~~~~ 319 (651)
++. ...+ ....++..++........ |.-.+|..+=. ...++.+.|.+.--...+..
T Consensus 140 ~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld 199 (486)
T KOG0550|consen 140 LKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD 199 (486)
T ss_pred hhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc
Confidence 441 1111 112223333333322222 33333332222 13377888877766666542
Q ss_pred CCCCHHhHHHHHH--HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH---HH----------HHHHHHcccCHHHHHH
Q 006303 320 VMADMASYNILLK--ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY---ST----------IVKVFADAKWWQMALK 384 (651)
Q Consensus 320 ~~~~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~---~~----------l~~~~~~~~~~~~a~~ 384 (651)
..+ .+..+++ ++.-.++.+.+...|++...+ .|+...- .. =..-..+.|++..|.+
T Consensus 200 -~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~l------dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E 270 (486)
T KOG0550|consen 200 -ATN--AEALYVRGLCLYYNDNADKAINHFQQALRL------DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYE 270 (486)
T ss_pred -cch--hHHHHhcccccccccchHHHHHHHhhhhcc------ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHH
Confidence 112 2333333 344567889999999988763 3443321 11 1234467899999999
Q ss_pred HHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-H--HHHHHHHHHhcCChhHHHHHHHH
Q 006303 385 VKEDMLSAG---VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-C--CNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 385 ~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~--~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.|.+.+... ..++...|........+.|+..+|+.--+...+. |.. . |..-..++.-.++|++|.+-|++
T Consensus 271 ~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~ 346 (486)
T KOG0550|consen 271 CYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEK 346 (486)
T ss_pred HHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988653 4566777888888888999999999988888754 332 2 22333456667889999999988
Q ss_pred hhhc
Q 006303 459 WTLS 462 (651)
Q Consensus 459 ~~~~ 462 (651)
..+.
T Consensus 347 a~q~ 350 (486)
T KOG0550|consen 347 AMQL 350 (486)
T ss_pred HHhh
Confidence 7654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.1 Score=48.39 Aligned_cols=97 Identities=7% Similarity=-0.072 Sum_probs=65.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCCH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPNT 398 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~ 398 (651)
..|...+..+.+.|++++|...|+.+.+. .|+. ..+-.+...|...|++++|...|+.+...-. ....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~------yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK------YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH------CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchh
Confidence 34555555555668888888888888763 2332 3566677778888888888888888875421 1123
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+..+..++...|+.+.|..+|+.+.+.
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666777788888888888887766
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.96 Score=40.59 Aligned_cols=130 Identities=8% Similarity=0.077 Sum_probs=71.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~- 300 (651)
.+.+.++..+.-.+.+.-....+.++.+...+.++.....|++.-...||.+.|...|++..+..-+.|..+++.+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 4455566666667777777777777777665556777777777777778888887777766544333333333322221
Q ss_pred ----h--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 301 ----N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 301 ----~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+ ++++..+...+++..... +.|+...|.-.-+..-.|+..+|.+..+.+..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~ 314 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQ 314 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhc
Confidence 1 134444555555444432 12333333322233334555555555555554
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.71 Score=39.04 Aligned_cols=32 Identities=16% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 253 SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 253 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
.|+...--.|..++.+.|++.+|...|++...
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qals 117 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALS 117 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc
Confidence 46666666677777788888888888877654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.97 Score=40.56 Aligned_cols=96 Identities=11% Similarity=0.143 Sum_probs=64.2
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH---
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ--- 441 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~--- 441 (651)
..+.++..+.-.|.+.-...++++..+...+-+......|++.-.+.||.+.|..+|++..+..-..+..+.+.++.
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 34566677777788888888888888776666777788888888888888888888887766533344434433332
Q ss_pred --HHHhcCChhHHHHHHHHhh
Q 006303 442 --ACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 442 --~~~~~g~~~~a~~~~~~~~ 460 (651)
.|.-.+++..|...+.++.
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~ 279 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEIL 279 (366)
T ss_pred hhheecccchHHHHHHHhhcc
Confidence 3444556666666665544
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.088 Score=47.33 Aligned_cols=103 Identities=12% Similarity=0.121 Sum_probs=62.8
Q ss_pred CCCHHHHHHHHHHHhh-------cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHH
Q 006303 512 KPTTTTYNILMKACCT-------DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVV 584 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~-------~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~ 584 (651)
+.|-.+|-..+..+.. +.+-....++.|.+.|+.-|..+|+.|++.+=+..- .|..
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~n- 126 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQN- 126 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccHH-
Confidence 4455556555555542 456666677788888888888888888876644321 1111
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGS 633 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 633 (651)
.+-.....|-++ -+-+++++++|...|+.||..+-..+++++.+.|-
T Consensus 127 vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 127 VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 111122222222 23467777888888888888888888888777665
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=95.91 E-value=0.97 Score=42.79 Aligned_cols=139 Identities=12% Similarity=0.241 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--c----CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 414 VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE--A----CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 414 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
+++...+++.|.+.|++-+..+|-+..-.... . ....++..+|+.|++.....+
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLT-------------------- 137 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLT-------------------- 137 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcccc--------------------
Confidence 44566777888888887777666553333222 1 234578889999987754322
Q ss_pred ccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhc----HHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHhcC
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTD----YYRVKALMNEMRTVGLSPNHI--SWTILIDACGGS 561 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~----~~~a~~~~~~~~~~~~~p~~~--~~~~li~~~~~~ 561 (651)
.++...+..++..-..+ .+.++.+|+.+.+.|+..+.. ..+.++..+...
T Consensus 138 ------------------------s~~D~~~a~lLA~~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~ 193 (297)
T PF13170_consen 138 ------------------------SPEDYPFAALLAMTSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGD 193 (297)
T ss_pred ------------------------CccchhHHHHHhcccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhcccc
Confidence 56677777777775543 467888999999988876443 333433333222
Q ss_pred CC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 562 GN--VEGALQILKIMREDGMSPDVVAYTTAIKVCVRS 596 (651)
Q Consensus 562 g~--~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 596 (651)
.. ...+.++++.+.+.|+++....|..+.-...-.
T Consensus 194 ~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~ 230 (297)
T PF13170_consen 194 DQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLE 230 (297)
T ss_pred chHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcC
Confidence 22 457888999999999999888887665544333
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.073 Score=38.14 Aligned_cols=55 Identities=20% Similarity=0.271 Sum_probs=26.5
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.|.+.+++++|.++++.+...+.. +...+.....++.+.|++++|...|+...+.
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 344455555555555555544321 3444444445555555555555555555443
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.07 Score=38.24 Aligned_cols=58 Identities=14% Similarity=0.001 Sum_probs=46.5
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
-..|.+.+++++|.++++.+..+ .+.+...|.....++.+.|++++|...|+...+.+
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL-----DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh-----CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 35677888999999999988874 24466677888888889999999999998888764
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.28 Score=48.12 Aligned_cols=66 Identities=12% Similarity=-0.059 Sum_probs=58.1
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+.+...++.+..+|.+.|++++|+..|++..+ +.|+. .+|..+..+|...|++++|+..+++.++.
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe------L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE------LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh------hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44678899999999999999999999999988 45664 35899999999999999999999999875
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.71 E-value=1.9 Score=40.74 Aligned_cols=177 Identities=10% Similarity=-0.013 Sum_probs=99.6
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcc-hHHHHHHHHHHHHhc----CC-CccccchHHH
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSG-EVEMFVGLMEVLEEF----RL-PVKELDEEFR 196 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~----~~-~~~~~~~~~~ 196 (651)
..++|+.+.|..++.+........++.....+-..+.+........+ +++.|...+++..+. +. .........
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e- 81 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE- 81 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH-
Confidence 46899999999999998875322223323344455555555566677 888888888876542 10 000000000
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHH---HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLV---SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
+ ...+...|+.+|...+..+ +|.++++.+...... ...++-.-+..+.+.++.+
T Consensus 82 --------------l--------r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~ 138 (278)
T PF08631_consen 82 --------------L--------RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEE 138 (278)
T ss_pred --------------H--------HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChh
Confidence 0 0134555677777766654 455555566443221 2444545566667788899
Q ss_pred HHHHHHHHHHhCCCcccHHHHHHHHHhh---c-CChHHHHHHHHHHHHCCCCCCH
Q 006303 274 KSRAIYEDLRSQNVTLNIYVFNSLMNVN---A-HDLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~---~-~~~~~a~~~~~~m~~~~~~~~~ 324 (651)
++.+.+.+|...-.. ....+..++... . .....+...++.+....+.|..
T Consensus 139 ~~~~~L~~mi~~~~~-~e~~~~~~l~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 139 EYEEILMRMIRSVDH-SESNFDSILHHIKQLAEKSPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHHHHhccc-ccchHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence 999999998876221 223333333332 2 3556666666666554444443
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.17 Score=40.66 Aligned_cols=98 Identities=13% Similarity=0.053 Sum_probs=56.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
|..++..+|.++++.|+++....+++..=.....|....+. .-......|+..+..
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~------------------------~~~~spl~Pt~~lL~ 56 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGD------------------------YPPSSPLYPTSRLLI 56 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCc------------------------cCCCCCCCCCHHHHH
Confidence 34566677777777777777766665443221111100000 011233566777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILLQACV 444 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll~~~~ 444 (651)
+++.+|+..|++..|+++++...+. +++.+..+|..|++-+.
T Consensus 57 AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 57 AIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 7777777777777777777766553 45555666777766443
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.16 Score=42.32 Aligned_cols=88 Identities=10% Similarity=-0.136 Sum_probs=67.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+...|++++|..+|+-+... -.-+..-|..|..++-..+++++|...|......+. -|...+-....++...|
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~-----d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~ 119 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIY-----DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMR 119 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHh-----CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhC
Confidence 345678999999999888763 134555677778888888889999988887776553 35555667788888889
Q ss_pred CHHHHHHHHHHHHH
Q 006303 413 LVEQAMHLFEEMLQ 426 (651)
Q Consensus 413 ~~~~a~~~~~~~~~ 426 (651)
+.+.|...|.....
T Consensus 120 ~~~~A~~~f~~a~~ 133 (165)
T PRK15331 120 KAAKARQCFELVNE 133 (165)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999998888876
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=95.39 E-value=3 Score=40.84 Aligned_cols=428 Identities=10% Similarity=0.042 Sum_probs=198.1
Q ss_pred HhcCCChHHHHHHhhhCCC----CC------ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH--HHh
Q 006303 201 CVNKPDVNLAIRYACIVPR----AD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV--CGI 268 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~~~----~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~ 268 (651)
+.+++++.+|.++|.++-+ ++ .....++++|.. ++.+.....+.+..+.. | ...|-.+..+ +-+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 4467888888888777632 11 222335555554 45566555555555431 2 1223333222 346
Q ss_pred cCCHHHHHHHHHHHHhC--CCcc---cHH--------HH-HHHHHh--hcCChHHHHHHHHHHHHCC----CCCCHHhHH
Q 006303 269 CGDYMKSRAIYEDLRSQ--NVTL---NIY--------VF-NSLMNV--NAHDLKFTLEVYKNMQKLG----VMADMASYN 328 (651)
Q Consensus 269 ~g~~~~a~~~~~~~~~~--g~~~---~~~--------~~-~~ll~~--~~~~~~~a~~~~~~m~~~~----~~~~~~~~~ 328 (651)
.+++..|.+.+..-.+. +..+ |.. .+ +....+ -.|.+.++..+++++...= ..-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 67788888877765544 2221 111 11 111111 1267777777777765532 336777777
Q ss_pred HHHHHHHhcCCH---------------HHHHHHHHHHHHhhhc--CCccccHHHHHHHHHHHHcc--cCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNT---------------VLAQEIYGEVKHLEAK--GVLKLDVFTYSTIVKVFADA--KWWQMALKVKEDM 389 (651)
Q Consensus 329 ~ll~~~~~~g~~---------------~~a~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~m 389 (651)
.++-.+.+.=-+ +.+.-..+++...... ..+-|-......++....-. .+..--+++++.-
T Consensus 172 ~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~W 251 (549)
T PF07079_consen 172 RAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENW 251 (549)
T ss_pred HHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHH
Confidence 777777653111 1111111111110000 00112222222222211110 1111112222222
Q ss_pred HHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccc
Q 006303 390 LSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAGCE----PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKT 464 (651)
Q Consensus 390 ~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 464 (651)
...-+.|+.. ....+...+.+ +.+++..+.+.+....+. --..+|..++....+.++...|.+.+.-+....+
T Consensus 252 e~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 252 ENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 2222333322 22333444443 455655555554433211 1234678888888888998888888876665554
Q ss_pred ccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCH-HHHHHHHHHHh------hcHHHHHHHHH
Q 006303 465 QVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTT-TTYNILMKACC------TDYYRVKALMN 537 (651)
Q Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ll~~~~------~~~~~a~~~~~ 537 (651)
...++.........+..+...+....+.....+. +-+.... ...|. ..-..++.+-- +.-++|..+++
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~---lwe~~qs--~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLN---LWEEIQS--YDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHH---HHHHHHh--hcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 4333322211111222221111111000000000 0000000 00110 01111111110 12456777777
Q ss_pred HHHHcCCCC-cHHHHHHHH----HHHhc---CCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 006303 538 EMRTVGLSP-NHISWTILI----DACGG---SGNVEGALQILKIMREDGMSP----DVVAYTTAIKV--CVRSKRLKQAF 603 (651)
Q Consensus 538 ~~~~~~~~p-~~~~~~~li----~~~~~---~g~~~~A~~~~~~~~~~~~~p----~~~~~~~li~~--~~~~g~~~~A~ 603 (651)
.+.+ +.| |...-|.+. ..|.. ...+..-..+-+-+.+.|+.| +...-|.|.+| +..+|++.++.
T Consensus 405 ~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 7665 233 333322222 23322 122334444444445567766 34455666665 56789999998
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 604 SLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
-+-..+. .+.|+..+|..+.-++....++++|..++..
T Consensus 483 ~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 483 LYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 8777776 3789999999999999999999998876553
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.29 E-value=1.4 Score=44.78 Aligned_cols=58 Identities=19% Similarity=0.153 Sum_probs=33.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH-----------HHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT-----------YSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.++......++|.+|..+-+...+ +.+|+.. |...-.+|.+.|+-.+|.++++++-..
T Consensus 778 siVqlHve~~~W~eAFalAe~hPe------~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 778 SLVQLHVETQRWDEAFALAEKHPE------FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHhhheeecccchHhHhhhhhCcc------ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 355666666777777776666554 3333321 122234556667777777777776543
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.6 Score=41.27 Aligned_cols=232 Identities=8% Similarity=-0.017 Sum_probs=110.5
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc--CCCccccccchhhHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL--GVAPLELFDGSGFKLLK 159 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~--~~~~~~~~~~~~~~~l~ 159 (651)
....+.++|+....+.+.. --+.+. .+..+..+..+..+.|++++++..--..++. ..+.. ...+..++
T Consensus 17 y~s~~~~~al~~w~~~L~~--l~~~~~---Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds----~~~~ea~l 87 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEK--LSDLMG---RFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDS----DFLLEAYL 87 (518)
T ss_pred hcCchHHHHHHHHHHHHHH--HHHHHH---HHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH
Confidence 3466777888877776654 222222 2455667777888899888766543322221 11111 11333344
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhc-CCCc--cccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEF-RLPV--KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
+....+.+.-++.+++.+-+.-... |..+ +.. .+..++..++.-.+.
T Consensus 88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~g------------------------------q~~l~~~~Ahlgls~ 137 (518)
T KOG1941|consen 88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGG------------------------------QVSLSMGNAHLGLSV 137 (518)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccc------------------------------hhhhhHHHHhhhHHH
Confidence 4333333333344444443332221 1111 111 222334445555555
Q ss_pred HHHHHHHHHHHHhcCC-----CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccHHHHHHHHHh-------
Q 006303 237 LVSALRAYDASKKHLS-----SPNMYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNIYVFNSLMNV------- 300 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~g~~~~~~~~~~ll~~------- 300 (651)
++++++.|+...+.-. -....++-.|...|.+..|+++|.-...+..+ -++..-..-|..+...
T Consensus 138 fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR 217 (518)
T KOG1941|consen 138 FQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALR 217 (518)
T ss_pred HHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHH
Confidence 5555555555443211 01234555666666666666655444333322 1222111222222110
Q ss_pred hcCChHHHHHHHHHH----HHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 301 NAHDLKFTLEVYKNM----QKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m----~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
..|.+.+|.+.-++. ...|-.+ .......+.+.|...|+.+.|+.-|++...
T Consensus 218 ~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 218 LLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 124444454444443 3334222 234455677888899999998888877654
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.42 Score=37.64 Aligned_cols=88 Identities=13% Similarity=0.037 Sum_probs=62.2
Q ss_pred HHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHh---HHHHHHHHHhcCCH
Q 006303 200 LCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYI---CRTIIDVCGICGDY 272 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~g~~ 272 (651)
+..+.|+.+.|++.|.+ .|....+||+-..++.-+|+.++|+.-+++.++-.-...... |-.-...|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 44556666666666554 377788999999999999999999999888877422222222 33334457778899
Q ss_pred HHHHHHHHHHHhCCC
Q 006303 273 MKSRAIYEDLRSQNV 287 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~ 287 (651)
+.|..-|+..-+.|.
T Consensus 132 d~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 132 DAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHhHHHHHHhCC
Confidence 999988888877664
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=95.15 E-value=1.7 Score=36.72 Aligned_cols=102 Identities=12% Similarity=0.064 Sum_probs=62.2
Q ss_pred HHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 241 LRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
.+....+.+.++.|+...+..+++.+.+.|++ ..+..+...++-+|.......+-...+....+.++=-+|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~----~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR-- 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQF----SQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR-- 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----HHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHH--
Confidence 34455666778888999999999999999987 444555566666666555555544444333333333333221
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEV 350 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 350 (651)
=...+..++..+...|++-+|.++.+..
T Consensus 88 --L~~~~~~iievLL~~g~vl~ALr~ar~~ 115 (167)
T PF07035_consen 88 --LGTAYEEIIEVLLSKGQVLEALRYARQY 115 (167)
T ss_pred --hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 0012445566666777777777776654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.27 Score=44.58 Aligned_cols=102 Identities=9% Similarity=-0.031 Sum_probs=79.8
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.|+.-+..+ ..|++.+|++.|...++.. |++.- ..+++.+++..+..+|++++|...|..+.+. .|+.-
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~Y--P~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~--~P~s~--- 212 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKY--PNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVKD--YPKSP--- 212 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcC--CCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHHh--CCCCC---
Confidence 666666555 5688999999999999984 43211 3677889999999999999999999999984 33222
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
-.-+.+++......+.|+.++|...|+++.+..
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 234567777778888999999999999998865
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.75 Score=38.38 Aligned_cols=54 Identities=15% Similarity=0.096 Sum_probs=31.3
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
.+.+.+..++|+..|..+.+.|-..-.............+.|+...|...|+.+
T Consensus 67 ~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdei 120 (221)
T COG4649 67 KLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEI 120 (221)
T ss_pred HHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHH
Confidence 344568888999988888776643333333333344444555555555555543
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.12 E-value=3.5 Score=40.10 Aligned_cols=162 Identities=16% Similarity=0.118 Sum_probs=82.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCC---Cc--ccH-HHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 006303 260 RTIIDVCGICGDYMKSRAIYEDLRSQN---VT--LNI-YVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILL 331 (651)
Q Consensus 260 ~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~--~~~-~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 331 (651)
..++-.|....+|+..+++++.+.... +. +.+ +.|...++- ..|+.++|++++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 344445777777777777777776541 00 111 111111111 1367777777777755555566777777776
Q ss_pred HHHHh---------cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC-H---HHHHHHH---H-HHHHCC-
Q 006303 332 KACCL---------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW-W---QMALKVK---E-DMLSAG- 393 (651)
Q Consensus 332 ~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~---~~a~~~~---~-~m~~~~- 393 (651)
+.|-. ...++.|+..|.+.-+ +.+|...--.++..+...|. + .+..++- . .+.+.|
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe------~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~ 298 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFE------IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS 298 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHc------CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence 66542 1235667777766554 33443332222222222222 1 1222222 1 111222
Q ss_pred --CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 394 --VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 394 --~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
-..+-..+.+++.++.-.|+.++|.+..++|.+.
T Consensus 299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 1234445566667777777777777777777655
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.72 Score=46.44 Aligned_cols=161 Identities=9% Similarity=0.071 Sum_probs=101.5
Q ss_pred HHHHhhhccCChHHHHHHHH--HHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccch
Q 006303 76 DMASKLAKDGRLEEFAMIVE--SVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 76 ~l~~~~~~~g~~~~A~~~~~--~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
...+...-+|+++++.++.+ .++. .+.+ +..+.+++-+-+.|..+.|+.+...-..
T Consensus 266 ~~fk~av~~~d~~~v~~~i~~~~ll~-~i~~---------~~~~~i~~fL~~~G~~e~AL~~~~D~~~------------ 323 (443)
T PF04053_consen 266 LEFKTAVLRGDFEEVLRMIAASNLLP-NIPK---------DQGQSIARFLEKKGYPELALQFVTDPDH------------ 323 (443)
T ss_dssp HHHHHHHHTT-HHH-----HHHHTGG-G--H---------HHHHHHHHHHHHTT-HHHHHHHSS-HHH------------
T ss_pred HHHHHHHHcCChhhhhhhhhhhhhcc-cCCh---------hHHHHHHHHHHHCCCHHHHHhhcCChHH------------
Confidence 33455556788888777664 1111 1121 1224455557788999998887543221
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhh
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGK 233 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~ 233 (651)
-|++.++ .|+.+.|.+..++ .++...|..|+......|+++.|++.|.+.. -+..|+-.|.-
T Consensus 324 rFeLAl~-------lg~L~~A~~~a~~-------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~----d~~~L~lLy~~ 385 (443)
T PF04053_consen 324 RFELALQ-------LGNLDIALEIAKE-------LDDPEKWKQLGDEALRQGNIELAEECYQKAK----DFSGLLLLYSS 385 (443)
T ss_dssp HHHHHHH-------CT-HHHHHHHCCC-------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----HHHHHHHHHH
T ss_pred HhHHHHh-------cCCHHHHHHHHHh-------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhc----CccccHHHHHH
Confidence 4555555 8999999887654 3455679999999999999999999998875 46677778888
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
.|+.+...++.+.....|. +|....++.-.|+.++..+++.+.
T Consensus 386 ~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 386 TGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp CT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred hCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 8998888888877776542 455555566678888888887654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.16 Score=48.63 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=80.5
Q ss_pred HHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHH
Q 006303 120 IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQ 199 (651)
Q Consensus 120 ~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 199 (651)
...|.+.|++..|...|++++.. -.... .-+.++...... + -...+..+..
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~--l~~~~------------------~~~~ee~~~~~~-~--------k~~~~lNlA~ 265 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSF--LEYRR------------------SFDEEEQKKAEA-L--------KLACHLNLAA 265 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHH--hhccc------------------cCCHHHHHHHHH-H--------HHHHhhHHHH
Confidence 34578999999999999987763 11000 000011111110 0 0122444555
Q ss_pred HHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHH-
Q 006303 200 LCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYM- 273 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~- 273 (651)
++.+.+++..|++...+. |.+.-+...-..+|...|+++.|+..|+.+.+ +.| |..+-+.|+.+-.+...+.
T Consensus 266 c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~ 343 (397)
T KOG0543|consen 266 CYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEE 343 (397)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHH
Confidence 666666666666554442 55567777778888888999999999999888 556 4445555655555554444
Q ss_pred HHHHHHHHHHhC
Q 006303 274 KSRAIYEDLRSQ 285 (651)
Q Consensus 274 ~a~~~~~~~~~~ 285 (651)
...++|..|...
T Consensus 344 kekk~y~~mF~k 355 (397)
T KOG0543|consen 344 KEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHhhc
Confidence 446788888654
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.98 Score=43.45 Aligned_cols=128 Identities=13% Similarity=0.145 Sum_probs=89.0
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCC----------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
+.|.+.|++..|...|+.+...-.... ...-..+++.+..+|.+.+++..|+....+.+..+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 355666777777666666443211000 01234467788899999999999999999999886 4588888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCh-hHHHHHHHHhhhc
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCN-ILLQACVEACQF-DRAFRLFRSWTLS 462 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~~~g~~-~~a~~~~~~~~~~ 462 (651)
.--..+|...|+++.|...|+++++. .|+..... .++.+-.+.... +...++|..|-..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 88899999999999999999999987 45545444 444443333333 4457888888654
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.94 E-value=2 Score=37.54 Aligned_cols=29 Identities=10% Similarity=-0.031 Sum_probs=18.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.+|--|...+...|+.++|..+|+-....
T Consensus 238 EtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 238 ETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 45666666666667777776666665554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.93 E-value=5.7 Score=41.57 Aligned_cols=93 Identities=16% Similarity=0.292 Sum_probs=61.5
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFE 607 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~ 607 (651)
+..+|.++-.+.+ -||-..|-.-+.+++..+++++-+++-.... .+.-|..++.+|.+.|+.++|.+++-
T Consensus 699 ~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYip 768 (829)
T KOG2280|consen 699 QNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIP 768 (829)
T ss_pred chHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhh
Confidence 4556666655543 3777777777788888888776655543332 25567777888888888888888877
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 608 EMKHYQIQPNLVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 608 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
+... .. -.+.+|.+.|++.+|.+
T Consensus 769 rv~~--l~-------ekv~ay~~~~~~~eAad 791 (829)
T KOG2280|consen 769 RVGG--LQ-------EKVKAYLRVGDVKEAAD 791 (829)
T ss_pred ccCC--hH-------HHHHHHHHhccHHHHHH
Confidence 7631 11 35667777777777654
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.63 Score=42.15 Aligned_cols=101 Identities=15% Similarity=0.091 Sum_probs=62.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
+.++-....++.|.+.|++.|..+|+.|++.+-+..-. |. ..+....--|-++-+-+++++++
T Consensus 86 ~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfi----------------P~-nvfQ~~F~HYP~QQ~C~I~vLeq 148 (406)
T KOG3941|consen 86 THVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFI----------------PQ-NVFQKVFLHYPQQQNCAIKVLEQ 148 (406)
T ss_pred chHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccc----------------cH-HHHHHHHhhCchhhhHHHHHHHH
Confidence 55555566666666666666666666666655432211 10 11111111223345668899999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGN-TVLAQEIYGEVKH 352 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 352 (651)
|...|+-||..+-..|++++.+.+- ..+..++.-.|.+
T Consensus 149 ME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 149 MEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 9999999999999999999987765 3444555555554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=2.9 Score=41.47 Aligned_cols=114 Identities=11% Similarity=0.101 Sum_probs=78.6
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHHhhcCChHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
..+..+|.+.-+...+.+. -|..+...+..+....++++.|...|++....++. ++...|..++..++|+.++|.+.+
T Consensus 317 ~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i 395 (458)
T PRK11906 317 ELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICI 395 (458)
T ss_pred hHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 3456677777777777543 46777777777777788899999999988776433 456777888888889999999988
Q ss_pred HHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 313 KNMQKLG-VMADMASYNILLKACCLAGNTVLAQEIYGE 349 (651)
Q Consensus 313 ~~m~~~~-~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 349 (651)
++..+.. ...-.......++.|+.. .++.|+++|-+
T Consensus 396 ~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 432 (458)
T PRK11906 396 DKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYYK 432 (458)
T ss_pred HHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHhh
Confidence 8865542 111233444455567654 46777777654
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.73 E-value=3.5 Score=42.29 Aligned_cols=175 Identities=12% Similarity=-0.003 Sum_probs=98.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhh----hhcChhHHHHHHHHHHHcCCCc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSI----REGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~----~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|..+..++..+.-.|+-+.+++++....+.+.--..+..+.... ++..+..++ .....+.|.++++.+.+ ..|
T Consensus 188 Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~-y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP 264 (468)
T PF10300_consen 188 PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLW-YHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYP 264 (468)
T ss_pred CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHH-HHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCC
Confidence 44566777788888999999999998776532223343333322 223333332 24566778888888887 455
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
+.. ++ +......+...|+.++|++.|++....... |..+- ...+.-
T Consensus 265 ~s~----lf--l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~------~~Ql~----------------------~l~~~E 310 (468)
T PF10300_consen 265 NSA----LF--LFFEGRLERLKGNLEEAIESFERAIESQSE------WKQLH----------------------HLCYFE 310 (468)
T ss_pred CcH----HH--HHHHHHHHHHhcCHHHHHHHHHHhccchhh------HHhHH----------------------HHHHHH
Confidence 443 22 222223334468888888888865431100 11111 123445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH-HHHhcCCH-------HHHHHHHHHHH
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIID-VCGICGDY-------MKSRAIYEDLR 283 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~-------~~a~~~~~~~~ 283 (651)
++-.+.-.+++++|.+.|..+.+..- -+...|.-+.. ++...|+. ++|.++|.+..
T Consensus 311 l~w~~~~~~~w~~A~~~f~~L~~~s~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 311 LAWCHMFQHDWEEAAEYFLRLLKESK-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred HHHHHHHHchHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 66667778888888888888877321 12223333322 23445655 66666666554
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.70 E-value=1.5 Score=34.64 Aligned_cols=91 Identities=19% Similarity=0.052 Sum_probs=64.8
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHH
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT---ITWSSLINACA 409 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~ 409 (651)
++...|+++.|++.|.+...+ .+-....||.-..++--.|+.++|++=+++.++..-..+. ..|..-...|.
T Consensus 52 alaE~g~Ld~AlE~F~qal~l-----~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCL-----APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred HHHhccchHHHHHHHHHHHHh-----cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 566778888888888888774 3556778888888888888888888888887764211122 23334444566
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006303 410 NAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~ 428 (651)
..|+.+.|..-|+..-+.|
T Consensus 127 l~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 127 LLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HhCchHHHHHhHHHHHHhC
Confidence 7788888888888777665
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.65 E-value=4.8 Score=39.37 Aligned_cols=430 Identities=12% Similarity=0.116 Sum_probs=220.2
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhCCC----CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIVPR----ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|++...|..++..+..++..++-.+.+.++.. -+.+|..-+.+=....++.....+|.+.+... .+...|...+
T Consensus 39 PtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~lYl 116 (660)
T COG5107 39 PTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWMLYL 116 (660)
T ss_pred chhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHHHH
Confidence 77777888888888888888888888777633 23566666666666788888888898888754 3466677666
Q ss_pred HHHHhcCC------HHHHHHHHHHHHh-CCCccc-HHHHHHHHHhhc-----C------ChHHHHHHHHHHHHCCCCCCH
Q 006303 264 DVCGICGD------YMKSRAIYEDLRS-QNVTLN-IYVFNSLMNVNA-----H------DLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 264 ~~~~~~g~------~~~a~~~~~~~~~-~g~~~~-~~~~~~ll~~~~-----~------~~~~a~~~~~~m~~~~~~~~~ 324 (651)
....+... -....+.|+.... .++.|- ...|+....... + +.+.....+.+|....+..=.
T Consensus 117 ~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral~tP~~nle 196 (660)
T COG5107 117 EYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRALQTPMGNLE 196 (660)
T ss_pred HHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHcCccccHH
Confidence 65444331 1122334443333 244432 344554444311 2 344555666666543211001
Q ss_pred HhHH------HHHHHHHh---cC----CHHHHHHHHHHHHHhhhcCCc---cccHHHHHHHHH-----------HHHcc-
Q 006303 325 ASYN------ILLKACCL---AG----NTVLAQEIYGEVKHLEAKGVL---KLDVFTYSTIVK-----------VFADA- 376 (651)
Q Consensus 325 ~~~~------~ll~~~~~---~g----~~~~a~~~~~~~~~~~~~~~~---~~~~~~~~~l~~-----------~~~~~- 376 (651)
..|+ .=++.... -| -+-.|...+++...+. +|.- +.+..++|-... -=...
T Consensus 197 klW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt-~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwIkwE~en~ 275 (660)
T COG5107 197 KLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLT-RGLSVKNPINLRTANKAARTSDSNWLNWIKWEMENG 275 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHh-ccccccCchhhhhhccccccccchhhhHhhHhhcCC
Confidence 1111 11111100 01 1344555555554432 2210 112223332111 00000
Q ss_pred ----cC-H-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 006303 377 ----KW-W-QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD 450 (651)
Q Consensus 377 ----~~-~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 450 (651)
|+ . +..--++++.... +.-....|-.--..+...++-+.|+.....-... .|+... .+-..|.-.++-+
T Consensus 276 l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--spsL~~--~lse~yel~nd~e 350 (660)
T COG5107 276 LKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPSLTM--FLSEYYELVNDEE 350 (660)
T ss_pred cccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCchhe--eHHHHHhhcccHH
Confidence 00 0 1111122222211 1112223333333344556666666655543322 343211 1223333344444
Q ss_pred HHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh--c
Q 006303 451 RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT--D 528 (651)
Q Consensus 451 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~ 528 (651)
.....|++..+.- .........+...... .+..+.....-.....-...|...|....+ .
T Consensus 351 ~v~~~fdk~~q~L---------------~r~ys~~~s~~~s~~D---~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~G 412 (660)
T COG5107 351 AVYGCFDKCTQDL---------------KRKYSMGESESASKVD---NNFEYSKELLLKRINKLTFVFCVHLNYVLRKRG 412 (660)
T ss_pred HHhhhHHHHHHHH---------------HHHHhhhhhhhhcccc---CCccccHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 4444444332210 0000000000000000 000000000000112334556666666554 6
Q ss_pred HHHHHHHHHHHHHcC-CCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVG-LSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY-TTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~-~~li~~~~~~g~~~~A~~~~ 606 (651)
.+.|..+|-+..+.| +.++..+++++|..++ .|+...|..+|+.-... -||...| +-.+.-+.+-++-+.|..+|
T Consensus 413 l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~naraLF 489 (660)
T COG5107 413 LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARALF 489 (660)
T ss_pred HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHHHH
Confidence 788999999999998 6788999999999776 57888999999876654 3555544 46777788899999999999
Q ss_pred HHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 006303 607 EEMKHYQIQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQDM 647 (651)
Q Consensus 607 ~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~m 647 (651)
+..... +.-+ ...|..+|.-=...|+...+..+-+.|.+.
T Consensus 490 etsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 490 ETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 966532 3333 578999999999999987776655555443
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.51 E-value=0.79 Score=46.52 Aligned_cols=80 Identities=5% Similarity=-0.020 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
...+...+.+...+..|-++|..+.+ ..++++.+...+++.+|..+-+...+ ..|+ +|.--.+.++...+++
T Consensus 750 l~~~a~ylk~l~~~gLAaeIF~k~gD----~ksiVqlHve~~~W~eAFalAe~hPe--~~~d--Vy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 750 LLLCATYLKKLDSPGLAAEIFLKMGD----LKSLVQLHVETQRWDEAFALAEKHPE--FKDD--VYMPYAQWLAENDRFE 821 (1081)
T ss_pred HHHHHHHHhhccccchHHHHHHHhcc----HHHHhhheeecccchHhHhhhhhCcc--cccc--ccchHHHHhhhhhhHH
Confidence 33334444445555556666655532 23455666666666666666665544 2233 2333344445555555
Q ss_pred HHHHHHHH
Q 006303 274 KSRAIYED 281 (651)
Q Consensus 274 ~a~~~~~~ 281 (651)
+|.+.|.+
T Consensus 822 EAqkAfhk 829 (1081)
T KOG1538|consen 822 EAQKAFHK 829 (1081)
T ss_pred HHHHHHHH
Confidence 55555543
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.1 Score=36.54 Aligned_cols=72 Identities=11% Similarity=0.053 Sum_probs=54.3
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
+...+-.-+....+.|++.+|+..|+.+... .|..-- ...+.-.++-+|...+++++|+..+++.++. .|+.
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~r--yP~g~y---a~qAqL~l~yayy~~~~y~~A~a~~~rFirL--hP~h 80 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTR--YPFGEY---AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL--HPTH 80 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCCcc---cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCC
Confidence 3445555566667889999999999999887 443211 2445567888999999999999999999994 4543
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.33 E-value=2.3 Score=42.95 Aligned_cols=158 Identities=16% Similarity=0.040 Sum_probs=89.4
Q ss_pred HHHhhcCCHHHHHHHHH--HHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChH
Q 006303 229 REFGKKRDLVSALRAYD--ASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLK 306 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~ 306 (651)
....-+++++.+.++.. ++.. .-+....+.++..+.+.|-.+.|+++..+-.
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~---~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~----------------------- 322 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP---NIPKDQGQSIARFLEKKGYPELALQFVTDPD----------------------- 322 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG---G--HHHHHHHHHHHHHTT-HHHHHHHSS-HH-----------------------
T ss_pred HHHHHcCChhhhhhhhhhhhhcc---cCChhHHHHHHHHHHHCCCHHHHHhhcCChH-----------------------
Confidence 34445677777777665 2111 1124457777777777777777777654311
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.-.....++|+++.|.++.++ ..+...|..|.....+.|+++-|.+.|
T Consensus 323 ----------------------~rFeLAl~lg~L~~A~~~a~~----------~~~~~~W~~Lg~~AL~~g~~~lAe~c~ 370 (443)
T PF04053_consen 323 ----------------------HRFELALQLGNLDIALEIAKE----------LDDPEKWKQLGDEALRQGNIELAEECY 370 (443)
T ss_dssp ----------------------HHHHHHHHCT-HHHHHHHCCC----------CSTHHHHHHHHHHHHHTTBHHHHHHHH
T ss_pred ----------------------HHhHHHHhcCCHHHHHHHHHh----------cCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 223444566777777666532 235667777777777777777777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
.+..+ |..|+-.|.-.|+.+.-.++.+.....| -++..+.++...|+.++..+++.+-
T Consensus 371 ~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 371 QKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 66432 4556666667777777777766666655 2555566666667777777777653
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.24 E-value=9 Score=40.80 Aligned_cols=181 Identities=12% Similarity=0.098 Sum_probs=117.3
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
....-+..+.+...+..|+.+-.. .+.+++.. .+.+..-+.-+.+.|++++|...|-+-+.. ++|..
T Consensus 336 ~le~kL~iL~kK~ly~~Ai~LAk~---~~~d~d~~-----~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s~---- 402 (933)
T KOG2114|consen 336 DLETKLDILFKKNLYKVAINLAKS---QHLDEDTL-----AEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPSE---- 402 (933)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHh---cCCCHHHH-----HHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChHH----
Confidence 444455555666666666665542 23344432 233334455567899999999888766542 33321
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCcc--HHHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADIL--FCNFVRE 230 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~l~~~ 230 (651)
+ +..+.+..+...-..+++.+.+.+.. .......|+.+|.+.++.+.-.++.+..+..... ....+..
T Consensus 403 -----V---i~kfLdaq~IknLt~YLe~L~~~gla--~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~I 472 (933)
T KOG2114|consen 403 -----V---IKKFLDAQRIKNLTSYLEALHKKGLA--NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEI 472 (933)
T ss_pred -----H---HHHhcCHHHHHHHHHHHHHHHHcccc--cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHH
Confidence 2 22556678888888889999988854 3444667889999999999888888777643333 4456677
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+.+.+-.++|..+-.... .+.+....++. ..|++++|++.+..++-
T Consensus 473 lr~snyl~~a~~LA~k~~-----~he~vl~ille---~~~ny~eAl~yi~slp~ 518 (933)
T KOG2114|consen 473 LRKSNYLDEAELLATKFK-----KHEWVLDILLE---DLHNYEEALRYISSLPI 518 (933)
T ss_pred HHHhChHHHHHHHHHHhc-----cCHHHHHHHHH---HhcCHHHHHHHHhcCCH
Confidence 777777777766655433 24455555554 56889999999987753
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=94.14 E-value=6.8 Score=39.08 Aligned_cols=170 Identities=10% Similarity=0.047 Sum_probs=116.7
Q ss_pred HHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC---CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHH
Q 006303 181 LEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMY 257 (651)
Q Consensus 181 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 257 (651)
|+....+|-+......++..+...-.....+.+..++ ..+..++..++.+|... ..+.-..+|+++.+..+ -|+.
T Consensus 56 ~~~~s~~~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv 133 (711)
T COG1747 56 IISLSKQLLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVV 133 (711)
T ss_pred HHHhhhccccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHH
Confidence 3333334545555666667776666666555555553 44557888899999888 66788899998888654 3455
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-----ccHHHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHH
Q 006303 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-----LNIYVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILL 331 (651)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-----~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll 331 (651)
.-..|...|-+ ++.+.+...|.....+=++ .-...|.-+......+.+..+.+...+... |...-...+.-+-
T Consensus 134 ~~ReLa~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 134 IGRELADKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELIGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 55666666655 8888888888887655332 123467777766677888888888888664 3333445566666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHL 353 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~ 353 (651)
.-|....++.+|++++..+.+.
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEH 234 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhh
Confidence 7888899999999999988764
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.99 E-value=1.3 Score=41.21 Aligned_cols=151 Identities=10% Similarity=-0.106 Sum_probs=76.3
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhc-CCCccccchHHHHH-HH
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEF-RLPVKELDEEFRIV-QL 200 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~-~~ 200 (651)
....|+..+|...++++++. .|++.. .....-.++.. .|+.+.-...++++... +...+-..+...+. =.
T Consensus 113 ~~~~g~~h~a~~~wdklL~d--~PtDll---a~kfsh~a~fy---~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFg 184 (491)
T KOG2610|consen 113 LWGRGKHHEAAIEWDKLLDD--YPTDLL---AVKFSHDAHFY---NGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFG 184 (491)
T ss_pred hhccccccHHHHHHHHHHHh--Cchhhh---hhhhhhhHHHh---ccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhh
Confidence 45677777777777777763 343321 11112222222 56666666666666643 21111112222222 23
Q ss_pred HhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCCH
Q 006303 201 CVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDY 272 (651)
Q Consensus 201 ~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~ 272 (651)
+.+.|-+++|++..++. +.+..+..++...+.-.|++.++.+...+-...--... ..-|.. .-.+...+.+
T Consensus 185 L~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~-Al~~iE~aey 263 (491)
T KOG2610|consen 185 LEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHT-ALFHIEGAEY 263 (491)
T ss_pred HHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHH-HHhhhcccch
Confidence 44567777777665553 22334555566667777777777776554332110011 111222 2234555778
Q ss_pred HHHHHHHHHH
Q 006303 273 MKSRAIYEDL 282 (651)
Q Consensus 273 ~~a~~~~~~~ 282 (651)
+.|+++|+.=
T Consensus 264 e~aleIyD~e 273 (491)
T KOG2610|consen 264 EKALEIYDRE 273 (491)
T ss_pred hHHHHHHHHH
Confidence 8888888653
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.67 Score=42.15 Aligned_cols=92 Identities=11% Similarity=0.020 Sum_probs=53.8
Q ss_pred HhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHH
Q 006303 165 LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAY 244 (651)
Q Consensus 165 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 244 (651)
+...|++..|...|...++.. |.+.. .+.++.=|.+.+..+|++++|..+|
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~Y--P~s~~---------------------------~~nA~yWLGe~~y~qg~y~~Aa~~f 201 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKY--PNSTY---------------------------TPNAYYWLGESLYAQGDYEDAAYIF 201 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcC--CCCcc---------------------------cchhHHHHHHHHHhcccchHHHHHH
Confidence 334577777877777777654 32211 1234444666666666776666666
Q ss_pred HHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 245 DASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 245 ~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
..+.+.-.. | -..++--|.....+.|+.++|..+|+++.++
T Consensus 202 ~~~~k~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 202 ARVVKDYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 666553221 1 2345555666666667777777777666655
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=93.76 E-value=6.7 Score=37.69 Aligned_cols=246 Identities=12% Similarity=0.075 Sum_probs=122.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHH--hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMA--SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWW 379 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~ 379 (651)
|+++.|.+-|+.|... |... -...|.-...+.|+.+.|.+.-+..-. .-|. .-.+...+...|..|+|
T Consensus 134 G~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~------~Ap~l~WA~~AtLe~r~~~gdW 204 (531)
T COG3898 134 GDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAE------KAPQLPWAARATLEARCAAGDW 204 (531)
T ss_pred CchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHh------hccCCchHHHHHHHHHHhcCCh
Confidence 5555555555555441 1111 122233333456666666666655544 1222 33456666677777777
Q ss_pred HHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCChhHH
Q 006303 380 QMALKVKEDMLSAG-VTPNTI--TWSSLINACAN---AGLVEQAMHLFEEMLQAGCEPNSQC-CNILLQACVEACQFDRA 452 (651)
Q Consensus 380 ~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a 452 (651)
+.|+++++.-.... +.++.. .-..|+.+-.. ..+...|...-.+..+. .|+..- -..-..++.+.|+..++
T Consensus 205 d~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg 282 (531)
T COG3898 205 DGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKG 282 (531)
T ss_pred HHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhh
Confidence 77777776654332 233322 12222222111 12344444444444332 344321 22234466677777777
Q ss_pred HHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHH
Q 006303 453 FRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRV 532 (651)
Q Consensus 453 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a 532 (651)
-.+++.+-+. .|....+...+++-.+ +.+
T Consensus 283 ~~ilE~aWK~-------------------------------------------------ePHP~ia~lY~~ar~g--dta 311 (531)
T COG3898 283 SKILETAWKA-------------------------------------------------EPHPDIALLYVRARSG--DTA 311 (531)
T ss_pred hhHHHHHHhc-------------------------------------------------CCChHHHHHHHHhcCC--CcH
Confidence 7777766543 4444444333333322 222
Q ss_pred HHHHHHHHHc-CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHH
Q 006303 533 KALMNEMRTV-GLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVC-VRSKRLKQAFSLFEEM 609 (651)
Q Consensus 533 ~~~~~~~~~~-~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m 609 (651)
..=++...+. .++| +....-.+..+-...|++..|..--+.... ..|....|-.|.+.- ...||-.++...+-+.
T Consensus 312 ~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 312 LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 2222222110 1233 344555666666777777777665555554 356777776666553 3347777777777777
Q ss_pred HHC
Q 006303 610 KHY 612 (651)
Q Consensus 610 ~~~ 612 (651)
.+.
T Consensus 390 v~A 392 (531)
T COG3898 390 VKA 392 (531)
T ss_pred hcC
Confidence 654
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.8 Score=39.68 Aligned_cols=206 Identities=14% Similarity=0.085 Sum_probs=113.9
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc-CCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL-GVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~-~~~~~~~ 149 (651)
-..+..+..+..+.|.+++++..--.-... ..+--.+....+++.++.+.+-+..++.+++..-+.-... |..|...
T Consensus 43 f~~lG~l~~a~s~~g~y~~mL~~a~sqi~~--a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~ 120 (518)
T KOG1941|consen 43 FRVLGCLVTAHSEMGRYKEMLKFAVSQIDT--ARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQL 120 (518)
T ss_pred HHHhccchhhhhhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccc
Confidence 345566667777778777765432221111 0011112223666777777777777777777766655543 3333111
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC----ccccchHHHHHHHHhcCCChHHHHHHhhhC-------C
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP----VKELDEEFRIVQLCVNKPDVNLAIRYACIV-------P 218 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~-------~ 218 (651)
-+...+.....+...+.++++++.|+........ .-.....-.++..|.+..++++|.-+.... .
T Consensus 121 ----~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~ 196 (518)
T KOG1941|consen 121 ----GGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYG 196 (518)
T ss_pred ----cchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcC
Confidence 1111222233444468889999998887653322 223345566777788888877776553332 1
Q ss_pred -CC-C-----ccHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 219 -RA-D-----ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 219 -~~-~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
++ . .....+.-++...|+..+|.+.-++..+ .|-.+ -....-.+.+.|...|+.+.|+.-|++.
T Consensus 197 l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 197 LKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred cCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 11 1 2233455566667777777766665443 33322 2344556677777778877777776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.52 E-value=3.7 Score=33.93 Aligned_cols=125 Identities=13% Similarity=0.134 Sum_probs=79.1
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..++..+...+.......+++.+...+ ..+..
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~------------------------------------------------~~~~~ 42 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN------------------------------------------------SENPA 42 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC------------------------------------------------ccchh
Confidence 456666666777888888887766432 23455
Q ss_pred HHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 517 TYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 517 ~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
..+.++..|++ +.......+.. .++......++..|.+.+.++++..++.++.. |...+..+..
T Consensus 43 ~~~~li~ly~~~~~~~ll~~l~~------~~~~yd~~~~~~~c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~ 107 (140)
T smart00299 43 LQTKLIELYAKYDPQKEIERLDN------KSNHYDIEKVGKLCEKAKLYEEAVELYKKDGN---------FKDAIVTLIE 107 (140)
T ss_pred HHHHHHHHHHHHCHHHHHHHHHh------ccccCCHHHHHHHHHHcCcHHHHHHHHHhhcC---------HHHHHHHHHH
Confidence 67778888875 34444444442 13344455577888888888888888877643 2223333444
Q ss_pred c-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 596 S-KRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR 630 (651)
Q Consensus 596 ~-g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 630 (651)
. ++.+.|.+++++- -+...|..++..+..
T Consensus 108 ~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l~ 137 (140)
T smart00299 108 HLGNYEKAIEYFVKQ------NNPELWAEVLKALLD 137 (140)
T ss_pred cccCHHHHHHHHHhC------CCHHHHHHHHHHHHc
Confidence 4 7888888877762 366678887777654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.51 E-value=3.7 Score=33.92 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=18.2
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI 268 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 268 (651)
.++..+.+.+........++.+...+. .+...++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence 344444444444444444444444332 333344444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.50 E-value=5.3 Score=35.70 Aligned_cols=148 Identities=12% Similarity=0.070 Sum_probs=68.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH---CC--CCCCHHhHHHHHH
Q 006303 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK---LG--VMADMASYNILLK 332 (651)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~---~~--~~~~~~~~~~ll~ 332 (651)
.|+--...|..+|..+.|-..+++.-+. .-..++++|+++|++-.. .+ .+.-...+..+-+
T Consensus 93 l~eKAs~lY~E~GspdtAAmaleKAak~--------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr 158 (308)
T KOG1585|consen 93 LYEKASELYVECGSPDTAAMALEKAAKA--------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSR 158 (308)
T ss_pred HHHHHHHHHHHhCCcchHHHHHHHHHHH--------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhh
Confidence 4555556677777777766666654321 001234556666655432 11 0111223444445
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAG---VTPNTITWSSLINAC 408 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~ 408 (651)
.+.+...+++|-..+.+-......-.--++ -..|...|-.+....++..|.++++.-.+.+ -.-+..+...|+.+|
T Consensus 159 ~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay 238 (308)
T KOG1585|consen 159 VLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY 238 (308)
T ss_pred HhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh
Confidence 555666666655444332211000000111 1224444445555666777777666643322 112445555666654
Q ss_pred HhcCCHHHHHHH
Q 006303 409 ANAGLVEQAMHL 420 (651)
Q Consensus 409 ~~~g~~~~a~~~ 420 (651)
- .|+.+++.++
T Consensus 239 d-~gD~E~~~kv 249 (308)
T KOG1585|consen 239 D-EGDIEEIKKV 249 (308)
T ss_pred c-cCCHHHHHHH
Confidence 3 3555554443
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.49 E-value=1.5 Score=35.75 Aligned_cols=77 Identities=16% Similarity=0.066 Sum_probs=51.8
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
...+.|++++|++.|+.+..+. |.+. -...+...|+.+|.+.+++++|+..
T Consensus 19 ~~l~~~~Y~~A~~~le~L~~ry--P~g~---------------------------ya~qAqL~l~yayy~~~~y~~A~a~ 69 (142)
T PF13512_consen 19 EALQKGNYEEAIKQLEALDTRY--PFGE---------------------------YAEQAQLDLAYAYYKQGDYEEAIAA 69 (142)
T ss_pred HHHHhCCHHHHHHHHHHHHhcC--CCCc---------------------------ccHHHHHHHHHHHHHccCHHHHHHH
Confidence 3344688999999888887654 2221 1124556688899999999999999
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+++.++..+...-.-|...+.+++..
T Consensus 70 ~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 70 YDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 99998865443334455555555443
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.35 E-value=0.22 Score=31.25 Aligned_cols=33 Identities=9% Similarity=0.174 Sum_probs=29.4
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhH
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSK 106 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~ 106 (651)
..+..+...+...|++++|+++|+++++. .|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--~P~~ 34 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--DPDD 34 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCC
Confidence 46778999999999999999999999999 7764
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.29 E-value=6.8 Score=36.29 Aligned_cols=141 Identities=13% Similarity=0.097 Sum_probs=64.3
Q ss_pred HhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccc--cchHHHHHH
Q 006303 122 KSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKE--LDEEFRIVQ 199 (651)
Q Consensus 122 ~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~--~~~~~~l~~ 199 (651)
.....|++.+|...|+...... |.. -...+.....+...|+.+.|..++..+........- ......++.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~--~~~------~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAA--PEN------SEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhC--ccc------chHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 3455666666666666666532 211 111122222334456666666666654332111000 011122233
Q ss_pred HHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcC
Q 006303 200 LCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICG 270 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 270 (651)
.....++.....+-+..-|.+......+...+...|+.+.|++.+-.+.+++.. -|...-..|+..+...|
T Consensus 215 qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 215 QAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 333344444445555555555555566666666666666666655544443211 23334444444444444
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=93.25 E-value=8.8 Score=37.46 Aligned_cols=85 Identities=11% Similarity=-0.072 Sum_probs=55.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc---ccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD---AKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
..+...++-+|....+++..+++++.+....... +.-+...--...-++.+ .|+.++|++++..+....-.++..+
T Consensus 141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~-~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~ 219 (374)
T PF13281_consen 141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCD-VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDT 219 (374)
T ss_pred hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccc-hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHH
Confidence 3444456667888889999999999888631000 11122222344555666 7888888888888665555677788
Q ss_pred HHHHHHHHH
Q 006303 401 WSSLINACA 409 (651)
Q Consensus 401 ~~~ll~~~~ 409 (651)
|..+.+.|-
T Consensus 220 ~gL~GRIyK 228 (374)
T PF13281_consen 220 LGLLGRIYK 228 (374)
T ss_pred HHHHHHHHH
Confidence 877776654
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.24 E-value=1.2 Score=41.16 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYI 622 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~ 622 (651)
..++..++..+..+|+.+.+...++++.... +-|...|..+|.+|.+.|+...|+..|+.+. +.|+.|-..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~ 231 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA 231 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence 3467778889999999999999999999864 3488899999999999999999999999876 478999998888
Q ss_pred HHHHHH
Q 006303 623 TLLRAR 628 (651)
Q Consensus 623 ~l~~~~ 628 (651)
......
T Consensus 232 ~y~~~~ 237 (280)
T COG3629 232 LYEEIL 237 (280)
T ss_pred HHHHHh
Confidence 777773
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.15 E-value=1 Score=39.00 Aligned_cols=67 Identities=21% Similarity=0.108 Sum_probs=58.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
...+..++..|.+.|+.++|.+.|.++......|.+. .+++-++++.....+++..+...+.+....
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~-----id~~l~~irv~i~~~d~~~v~~~i~ka~~~ 102 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHK-----IDMCLNVIRVAIFFGDWSHVEKYIEKAESL 102 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHH-----HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 5678899999999999999999999999888777755 666778899999999999999998888764
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=93.04 E-value=8 Score=39.71 Aligned_cols=164 Identities=15% Similarity=0.139 Sum_probs=94.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-CCccc-----HHHHHHHHHhhc------CChHHHHHHHHHHHHCCCCCCHHh
Q 006303 259 CRTIIDVCGICGDYMKSRAIYEDLRSQ-NVTLN-----IYVFNSLMNVNA------HDLKFTLEVYKNMQKLGVMADMAS 326 (651)
Q Consensus 259 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-g~~~~-----~~~~~~ll~~~~------~~~~~a~~~~~~m~~~~~~~~~~~ 326 (651)
...++....-.||-+.+++.+.+..+. ++.-. ...|+..+..+. .+.+.+.++++.+... -|+...
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l 268 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL 268 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence 344555555556666666666554442 12111 122233332222 2456778888887765 466655
Q ss_pred HHHH-HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 327 YNIL-LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 327 ~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
|... .+.+...|++++|++.|+........ .-+.....+--+...+.-..+|++|...|..+.+.. ..+..+|.-+.
T Consensus 269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~-~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 269 FLFFEGRLERLKGNLEEAIESFERAIESQSE-WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHhccchhh-HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 5433 35566778888888888865431111 012233445556777888889999999999988753 22444444444
Q ss_pred HH-HHhcCCH-------HHHHHHHHHHHH
Q 006303 406 NA-CANAGLV-------EQAMHLFEEMLQ 426 (651)
Q Consensus 406 ~~-~~~~g~~-------~~a~~~~~~~~~ 426 (651)
.+ +...|+. ++|.++|.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 33 3455666 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.89 E-value=14 Score=38.87 Aligned_cols=83 Identities=17% Similarity=0.265 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 512 KPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTA 589 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~l 589 (651)
-||-..|..-+.+++. ++++-+++-+.+. .+.-|.-.+.+|.+.|+.++|.+++.+... .. -.
T Consensus 712 ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ek 776 (829)
T KOG2280|consen 712 IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EK 776 (829)
T ss_pred CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HH
Confidence 6788888888888873 6666665544432 245666788999999999999999877543 11 56
Q ss_pred HHHHHhcCCHHHHHHHHHHH
Q 006303 590 IKVCVRSKRLKQAFSLFEEM 609 (651)
Q Consensus 590 i~~~~~~g~~~~A~~~~~~m 609 (651)
..+|.+.|++.+|.++--+-
T Consensus 777 v~ay~~~~~~~eAad~A~~~ 796 (829)
T KOG2280|consen 777 VKAYLRVGDVKEAADLAAEH 796 (829)
T ss_pred HHHHHHhccHHHHHHHHHHh
Confidence 78999999999998866554
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.71 E-value=6.5 Score=34.49 Aligned_cols=160 Identities=11% Similarity=0.001 Sum_probs=81.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
..+||.|.-.+...|+++.|.+.|+...+..+.-+-...|.-|.. +.|++..|.+-+...-+.. +.|+. -...+-.-
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D-~~DPf-R~LWLYl~ 176 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDD-PNDPF-RSLWLYLN 176 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcC-CCChH-HHHHHHHH
Confidence 446777777777777777777777777766444333344444443 3467777766666655442 11221 11111111
Q ss_pred HhcCCHHHHHHHH-HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC------CCHHHHHHHHHH
Q 006303 335 CLAGNTVLAQEIY-GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT------PNTITWSSLINA 407 (651)
Q Consensus 335 ~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~------~~~~~~~~ll~~ 407 (651)
-..-+..+|..-+ ++... .|..-|...|-.|.- |++. ...+++++....-. .=..||--+..-
T Consensus 177 E~k~dP~~A~tnL~qR~~~--------~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~ 246 (297)
T COG4785 177 EQKLDPKQAKTNLKQRAEK--------SDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKY 246 (297)
T ss_pred HhhCCHHHHHHHHHHHHHh--------ccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHH
Confidence 2233455554433 33322 343444333322221 1111 12223333221100 113567778888
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 006303 408 CANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 408 ~~~~g~~~~a~~~~~~~~~~ 427 (651)
+...|+.++|..+|+-....
T Consensus 247 ~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 247 YLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhccccHHHHHHHHHHHHHH
Confidence 88889999999988887754
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.64 E-value=6.6 Score=36.88 Aligned_cols=94 Identities=11% Similarity=0.069 Sum_probs=40.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH----HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY----STIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
|...+...=++|...|+.+.-...++++... ..+|...| ..+..++...|-+++|++.-++..+.+ +-|.
T Consensus 136 Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-----wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~ 209 (491)
T KOG2610|consen 136 DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-----WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDC 209 (491)
T ss_pred hhhhhhhhhhHHHhccchhhhhhHHHHhccc-----cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-Ccch
Confidence 4444444444455555554444444444321 12222211 222333344555555555555544432 2234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 399 ITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
-.-.++...+...|+..++.+...
T Consensus 210 Wa~Ha~aHVlem~~r~Keg~eFM~ 233 (491)
T KOG2610|consen 210 WASHAKAHVLEMNGRHKEGKEFMY 233 (491)
T ss_pred HHHHHHHHHHHhcchhhhHHHHHH
Confidence 444444444444555555544443
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=92.62 E-value=6.3 Score=34.14 Aligned_cols=92 Identities=15% Similarity=0.121 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMREDGMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH---YQIQPNLVTYI 622 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~~p~~~~~~ 622 (651)
...+..+.+.|++.|+.+.|.+.+.++.+....+. ...+-.+|....-.|++..+.+.+.+... .|-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 34688899999999999999999999998655544 44667888999999999999999888763 33333333322
Q ss_pred HHHH--HHHhcCCHHHHHH
Q 006303 623 TLLR--ARSRYGSLHEVQQ 639 (651)
Q Consensus 623 ~l~~--~~~~~g~~~~a~~ 639 (651)
.+.. ++...|++.+|-+
T Consensus 116 k~~~gL~~l~~r~f~~AA~ 134 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAE 134 (177)
T ss_pred HHHHHHHHHHhchHHHHHH
Confidence 3333 2334667777655
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=92.47 E-value=21 Score=39.85 Aligned_cols=54 Identities=19% Similarity=0.136 Sum_probs=27.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHH--HHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFT--YSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
-+.+|..+|+|.+|..+..++.. ..+... -..|+.-+...++.-+|-++..+..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~-------~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE-------GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC-------CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 34555566666666666555431 112111 2445556666666666666555544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=92.28 E-value=0.092 Score=30.72 Aligned_cols=33 Identities=15% Similarity=0.261 Sum_probs=28.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAM 92 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 92 (651)
+.++++.+|++ ..+|..++..|...|++++|++
T Consensus 2 y~kAie~~P~n-~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNN-AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCC-HHHHHHHHHHHHHCcCHHhhcC
Confidence 34677888999 9999999999999999999863
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.23 E-value=3.6 Score=33.70 Aligned_cols=65 Identities=12% Similarity=0.000 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD 221 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 221 (651)
.+.++.....-...++.+++..+++.+.-.. |.....-..-+..+...|++.+|.++++.+....
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLr--P~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLR--PNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--CCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3334444434444688888988888887644 5554444444555566666666666666664443
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=91.94 E-value=4.3 Score=40.47 Aligned_cols=59 Identities=8% Similarity=0.117 Sum_probs=40.5
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 553 ILIDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
.+..++.+.|+.++|.+.+.+|.+..-. -+......|+.++...+.+.++..++.+--+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 3445556778888888888888764211 1333556788888888888888888887643
|
The molecular function of this protein is uncertain. |
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=91.93 E-value=24 Score=39.36 Aligned_cols=157 Identities=11% Similarity=0.155 Sum_probs=75.0
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH--------HHH
Q 006303 295 NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV--------FTY 366 (651)
Q Consensus 295 ~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~--------~~~ 366 (651)
..++....|..---.++|++.... ++..+....+-..+..|.++-+.+....+......-..+.+. ..|
T Consensus 662 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 738 (932)
T PRK13184 662 ELFLSFWSGFTPFLPELFQRAWDL---RDYRALADIFYVACDLGNWEFFSQFSDILAEVSDEITFTESIVEQKVEELMFF 738 (932)
T ss_pred HHHHHHHhcCchhhHHHHHHHhhc---ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhccchHHHHhhhHHHHHHH
Confidence 344444555555556666666653 355566666666678888887777666655311010011111 012
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNT--ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN--SQCCNILLQA 442 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~ 442 (651)
-.-+.++....+++++...+... .|.. ..+..++.-+.-.++.+....+.+.+.+.-.... .......+.+
T Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 813 (932)
T PRK13184 739 LKGLEALSNKEDYEKAFKHLDNT-----DPTLILYAFDLFAIQALLDEEGESIIQLLQLIYDYVSEEERHDHLLVYEIQA 813 (932)
T ss_pred HHHHHHHHccccHHHHHhhhhhC-----CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHhccCChhhhhhhhHHHHHH
Confidence 22234444444555555433221 2222 2233333333334445555555554444321111 1123445666
Q ss_pred HHhcCChhHHHHHHHHh
Q 006303 443 CVEACQFDRAFRLFRSW 459 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~ 459 (651)
|.-..++++|-++++..
T Consensus 814 ~~~~~~~~~~~~~~~~~ 830 (932)
T PRK13184 814 HLWNRDLKKAYKLLNRY 830 (932)
T ss_pred HHHhccHHHHHHHHHhC
Confidence 77777777777777554
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.58 E-value=7.7 Score=32.90 Aligned_cols=135 Identities=13% Similarity=0.173 Sum_probs=77.2
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCc
Q 006303 417 AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNF 496 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (651)
..++++.+.+.+++|+...+..+++.+.+.|++..-..++.. +
T Consensus 13 llEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq~----~--------------------------------- 55 (167)
T PF07035_consen 13 LLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQY----H--------------------------------- 55 (167)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHhh----c---------------------------------
Confidence 345666777778888888888899988888887665555432 1
Q ss_pred cCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 497 VPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 497 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+-+|.......+-.+...+..+.++--+|.++ =...+..+++.+...|++-+|.++......
T Consensus 56 --------------Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkR----L~~~~~~iievLL~~g~vl~ALr~ar~~~~ 117 (167)
T PF07035_consen 56 --------------VIPDSKPLACQLLSLGNQYPPAYQLGLDMLKR----LGTAYEEIIEVLLSKGQVLEALRYARQYHK 117 (167)
T ss_pred --------------ccCCcHHHHHHHHHhHccChHHHHHHHHHHHH----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCC
Confidence 24454444444444443333344443334331 011345566777788888888887766532
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 577 DGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 577 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
. +......++.+-.+.+|...=..+++-..
T Consensus 118 ~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~ 147 (167)
T PF07035_consen 118 V----DSVPARKFLEAAANSNDDQLFYAVFRFFE 147 (167)
T ss_pred c----ccCCHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 1 11222345566666666554444444443
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=91.55 E-value=4.5 Score=40.21 Aligned_cols=94 Identities=10% Similarity=0.007 Sum_probs=48.6
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-cccHHHHHH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV-TLNIYVFNS 296 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~-~~~~~~~~~ 296 (651)
.++.+...+..++.-.++++.|...|+.... ..|| ..+|......+.-.|+.++|.+.+++..+..+ ..-......
T Consensus 336 ~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~ 413 (458)
T PRK11906 336 VDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKE 413 (458)
T ss_pred CCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHH
Confidence 3334444455555555666667777766665 3343 33444444445556777777777766544421 122233333
Q ss_pred HHHhhc-CChHHHHHHHHH
Q 006303 297 LMNVNA-HDLKFTLEVYKN 314 (651)
Q Consensus 297 ll~~~~-~~~~~a~~~~~~ 314 (651)
.+..|. ...+.+..+|-+
T Consensus 414 ~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 414 CVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHcCCchhhhHHHHhh
Confidence 343344 456666666544
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.21 E-value=8.3 Score=32.53 Aligned_cols=122 Identities=12% Similarity=0.071 Sum_probs=71.8
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHH-----HHHHHhhcCC
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVF-----NSLMNVNAHD 304 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~-----~~ll~~~~~~ 304 (651)
+++.++.++|+.-|..+.+.|... ...............|+...|...|++.-.....|-..-= ..++-.-.|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 456677788888888887766532 2223333344456678888888888877665433332211 1111122356
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+++...-.+.+...+-+.....-..|.-+-.+.|++.+|.+.|.++..
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 666666666665555444445555666666677777777777777654
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=91.04 E-value=1 Score=28.15 Aligned_cols=27 Identities=15% Similarity=0.111 Sum_probs=15.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
++..+...|...|++++|+++|+++.+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344555566666666666666666655
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.04 E-value=0.54 Score=27.87 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=19.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+|+.|...|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46777888888888888888888754
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.03 E-value=13 Score=34.52 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=31.1
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
....|++.+|...|+...+... -+...--.+..+|...|+.+.|..++..+...
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3445666666666666655322 12344555666666666666666666665543
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=90.94 E-value=0.21 Score=29.63 Aligned_cols=28 Identities=11% Similarity=0.126 Sum_probs=23.6
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHh
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVS 100 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 100 (651)
++..|+..+.+.|++++|+.+|++.+..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l 28 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALAL 28 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3678999999999999999999997654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=90.94 E-value=7.5 Score=32.53 Aligned_cols=62 Identities=16% Similarity=0.034 Sum_probs=35.9
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV 217 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 217 (651)
++..|+.....-...++.+++..+++.+.... |...+.-..-+..+...|++.+|.++++.+
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvLR--P~~~e~~~~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVLR--PEFPELDLFDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44445555555555688888888888887644 544444433444444555555555555544
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.77 E-value=3.5 Score=38.28 Aligned_cols=77 Identities=9% Similarity=0.185 Sum_probs=51.1
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQCCNIL 439 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l 439 (651)
++..++..+...|+++.+...++++..... -+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+....
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 455566666677777777777777766543 3666777777777777777777777776654 4667776666555
Q ss_pred HHH
Q 006303 440 LQA 442 (651)
Q Consensus 440 l~~ 442 (651)
...
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 544
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=90.58 E-value=29 Score=37.65 Aligned_cols=261 Identities=10% Similarity=0.048 Sum_probs=134.9
Q ss_pred cchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH----hhcCCHHHHHHHHHHHHhcCCCCcHHhH--H--HH
Q 006303 191 LDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF----GKKRDLVSALRAYDASKKHLSSPNMYIC--R--TI 262 (651)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~--~l 262 (651)
...+..-...|...|.+++|+...-.+.+. .....++.-+ ...+++...+...+.+ |+.... . .+
T Consensus 347 ~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~-~~aa~lle~~~~~L~~~~~lsll~~~~~~l------P~~~l~~~P~Lvl 419 (894)
T COG2909 347 KELHRAAAEWFAEHGLPSEAIDHALAAGDP-EMAADLLEQLEWQLFNGSELSLLLAWLKAL------PAELLASTPRLVL 419 (894)
T ss_pred hHHHHHHHHHHHhCCChHHHHHHHHhCCCH-HHHHHHHHhhhhhhhcccchHHHHHHHHhC------CHHHHhhCchHHH
Confidence 445555666677777777777665444332 2222222222 2233433333333322 221111 1 12
Q ss_pred HHH--HHhcCCHHHHHHHHHHHHhCCCcccH-------HHHHHH---HHhhcCChHHHHHHHHHHHHC----CCCCCHHh
Q 006303 263 IDV--CGICGDYMKSRAIYEDLRSQNVTLNI-------YVFNSL---MNVNAHDLKFTLEVYKNMQKL----GVMADMAS 326 (651)
Q Consensus 263 ~~~--~~~~g~~~~a~~~~~~~~~~g~~~~~-------~~~~~l---l~~~~~~~~~a~~~~~~m~~~----~~~~~~~~ 326 (651)
..+ .....++++|..++.++...-..|+. ..|+.+ +..+.++++.+.++-+..... -..+....
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~ 499 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVA 499 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhh
Confidence 222 33457899999888887554222221 233333 334558888888877776543 23345667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHH-----HHHHHcccC--HHHHHHHHHHHHHCC---CC-
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTI-----VKVFADAKW--WQMALKVKEDMLSAG---VT- 395 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l-----~~~~~~~~~--~~~a~~~~~~m~~~~---~~- 395 (651)
+..+..+..-.|++++|..+.++..++.. ..+...+..+ ...+...|. +.+.+..|....... ..
T Consensus 500 ~sv~~~a~~~~G~~~~Al~~~~~a~~~a~----~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~ 575 (894)
T COG2909 500 LSVLGEAAHIRGELTQALALMQQAEQMAR----QHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPR 575 (894)
T ss_pred hhhhhHHHHHhchHHHHHHHHHHHHHHHH----HcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhccc
Confidence 77778888889999999999888877532 2233333322 233455663 333333343332210 01
Q ss_pred --CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHH--H--HHHHHHHHHhcCChhHHHHHHHHhhhcccc
Q 006303 396 --PNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPNSQ--C--CNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 396 --~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~--~--~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (651)
+-..++..++.++.+ .+.+..-...-.+.| ..|... - +..|+..+...|+.++|...+.++......
T Consensus 576 ~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 576 HEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred chhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 123445555666555 333222222221111 122222 2 235677778899999999998888765443
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.53 E-value=2.2 Score=43.23 Aligned_cols=153 Identities=10% Similarity=0.020 Sum_probs=102.8
Q ss_pred hhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHH
Q 006303 80 KLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLK 159 (651)
Q Consensus 80 ~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~ 159 (651)
.+...|+++.|..++..+.+. .. ..++.-+-++|-.++|+++ -..|+. -+.+.+
T Consensus 595 t~vmrrd~~~a~~vLp~I~k~--~r------------t~va~Fle~~g~~e~AL~~-------s~D~d~-----rFelal 648 (794)
T KOG0276|consen 595 TLVLRRDLEVADGVLPTIPKE--IR------------TKVAHFLESQGMKEQALEL-------STDPDQ-----RFELAL 648 (794)
T ss_pred HHhhhccccccccccccCchh--hh------------hhHHhHhhhccchHhhhhc-------CCChhh-----hhhhhh
Confidence 334567888887766665432 11 1222234566666666544 234433 455555
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHH
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
+ .|+++.|.++..+. ++..-|..|+.+....+++..|.+.|... .-+..|+-.+...|+-+.
T Consensus 649 ~-------lgrl~iA~~la~e~-------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a----~d~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 649 K-------LGRLDIAFDLAVEA-------NSEVKWRQLGDAALSAGELPLASECFLRA----RDLGSLLLLYTSSGNAEG 710 (794)
T ss_pred h-------cCcHHHHHHHHHhh-------cchHHHHHHHHHHhhcccchhHHHHHHhh----cchhhhhhhhhhcCChhH
Confidence 5 79999998876653 44566999999999999999999998775 346677778888888887
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...+-....+.|. .|.-.-+|-..|+++++.+++..-
T Consensus 711 l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence 7777777766553 233334566789999998888754
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.31 E-value=13 Score=33.46 Aligned_cols=199 Identities=16% Similarity=0.058 Sum_probs=92.9
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhc-CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-cHHHHHHH-HH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKH-LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-NIYVFNSL-MN 299 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-~~~~~~~l-l~ 299 (651)
.+......+...+++..+...+...... ........+......+...+++..+...+.........+ ....+... +.
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGAL 140 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHH
Confidence 3444555566666666666666655532 122344455555555666666666666666665543322 11222222 22
Q ss_pred hhcCChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADA 376 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 376 (651)
...++++.+...+.+...... ......+......+...++.+.+...+...... .+. ....+..+...+...
T Consensus 141 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 141 YELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL-----NPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh-----CcccchHHHHHhhHHHHHc
Confidence 233455555555555433110 012222223333344555666666666655542 112 234455555555555
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
++++.+...+......... ....+..+...+...+..+.+...+.+..+.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 216 GKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred ccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 5555665555555543211 1222223333333444455555555555443
|
|
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=90.25 E-value=22 Score=35.77 Aligned_cols=164 Identities=9% Similarity=0.039 Sum_probs=105.3
Q ss_pred ccHHHHHHHHHhhcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 289 LNIYVFNSLMNVNAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 289 ~~~~~~~~ll~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
.|....-+++..++. ...-++.+..+|...| -+...|-.++.+|... .-+.-..+++++.+ ..-+....
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve------~dfnDvv~ 134 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVE------YDFNDVVI 134 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHH------hcchhHHH
Confidence 456666677776664 3445667777887765 4667788888888877 44566777776665 23444444
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTP-----NTITWSSLINACANAGLVEQAMHLFEEMLQA-GCEPNSQCCNILL 440 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~ll 440 (651)
..-+..+...++.+.+...|.++...-++. -...|..+... -..+.+....+..++... |...-...+.-+.
T Consensus 135 ~ReLa~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 135 GRELADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 444444555578888888888876542210 12245555442 135677777777777653 3344455666667
Q ss_pred HHHHhcCChhHHHHHHHHhhhcc
Q 006303 441 QACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.-|....++++|++++..+.+.+
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhc
Confidence 77888899999999998877654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.17 E-value=30 Score=37.19 Aligned_cols=154 Identities=14% Similarity=0.059 Sum_probs=97.6
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
++.........+..+-..|++++|...|-+.+.. ++|+ .++..+....+...-...|+.+.+.|+..
T Consensus 364 ~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s------------~Vi~kfLdaq~IknLt~YLe~L~~~gla~ 430 (933)
T KOG2114|consen 364 EDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS------------EVIKKFLDAQRIKNLTSYLEALHKKGLAN 430 (933)
T ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH------------HHHHHhcCHHHHHHHHHHHHHHHHccccc
Confidence 3333444455556666789999999988776543 3554 23556778888888889999999988665
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
.+. ..+|++ .|.+.++.+.-.+..+... .|.. .......+..|.+.+=.++|..+..+......+...
T Consensus 431 ~dh-----ttlLLn---cYiKlkd~~kL~efI~~~~-~g~~---~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~i 498 (933)
T KOG2114|consen 431 SDH-----TTLLLN---CYIKLKDVEKLTEFISKCD-KGEW---FFDVETALEILRKSNYLDEAELLATKFKKHEWVLDI 498 (933)
T ss_pred chh-----HHHHHH---HHHHhcchHHHHHHHhcCC-Ccce---eeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHH
Confidence 442 233444 3444677666665554432 1111 112445667777778888888777766554444433
Q ss_pred HHHHHhhcCCHHHHHHHHHHHH
Q 006303 227 FVREFGKKRDLVSALRAYDASK 248 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~ 248 (651)
.+-..+++++|++.+..+.
T Consensus 499 ---lle~~~ny~eAl~yi~slp 517 (933)
T KOG2114|consen 499 ---LLEDLHNYEEALRYISSLP 517 (933)
T ss_pred ---HHHHhcCHHHHHHHHhcCC
Confidence 3445688999988887653
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.15 E-value=14 Score=33.54 Aligned_cols=61 Identities=11% Similarity=-0.018 Sum_probs=40.9
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
=+..-.+.|++++|.+.|+.+....+- | ...+.-.++.++-+.+++++|+..+++..+.-.
T Consensus 40 ~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP 102 (254)
T COG4105 40 EGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYP 102 (254)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC
Confidence 344455668888888888888764321 1 344555666677788888888888888776633
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.84 E-value=15 Score=33.38 Aligned_cols=55 Identities=15% Similarity=0.064 Sum_probs=28.1
Q ss_pred HHcccCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 373 FADAKWWQMALKVKEDMLSAGV--TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
-.+.|++++|.+.|+.+...-+ +-...+.-.++.++.+.+++++|...+++..+.
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 3455566666666665554311 112334444455555556666666666555554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.59 E-value=22 Score=37.60 Aligned_cols=17 Identities=12% Similarity=-0.039 Sum_probs=9.4
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~ 352 (651)
...+.+.|+..|+.+..
T Consensus 261 ~~~d~e~a~~~l~~aa~ 277 (552)
T KOG1550|consen 261 VTQDLESAIEYLKLAAE 277 (552)
T ss_pred ccccHHHHHHHHHHHHH
Confidence 34456666666655543
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.48 E-value=16 Score=33.19 Aligned_cols=55 Identities=18% Similarity=0.212 Sum_probs=45.1
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
+..++++|+.-|+..++...+-..|- +.++-.++..+.+.|++++..+.|.+++.
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWG----FKALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWG----FKALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhH----HHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 35688999999999999855545553 67778889999999999999999988875
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.27 E-value=12 Score=31.37 Aligned_cols=111 Identities=14% Similarity=0.161 Sum_probs=64.7
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHH-HHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 332 KACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYST-IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 332 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
..-.+.++.+++..+++.+.- +.|....... -...+...|+|.+|.++|+.+.+.. |....-..|+..|..
T Consensus 18 ~~al~~~~~~D~e~lL~ALrv------LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~ 89 (160)
T PF09613_consen 18 SVALRLGDPDDAEALLDALRV------LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLY 89 (160)
T ss_pred HHHHccCChHHHHHHHHHHHH------hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHH
Confidence 344567899999999999887 4555544332 3455788999999999999987653 333444455554444
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 411 AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 411 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
...-..-..+-+++.+.+- |+.+ ..+++.+....+...|.
T Consensus 90 ~~~D~~Wr~~A~evle~~~--d~~a-~~Lv~~Ll~~~~~~~a~ 129 (160)
T PF09613_consen 90 ALGDPSWRRYADEVLESGA--DPDA-RALVRALLARADLEPAH 129 (160)
T ss_pred HcCChHHHHHHHHHHhcCC--ChHH-HHHHHHHHHhccccchh
Confidence 3332233333344555543 3322 23445544444444443
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.81 E-value=9.6 Score=33.01 Aligned_cols=95 Identities=17% Similarity=0.072 Sum_probs=47.3
Q ss_pred HhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLL 158 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l 158 (651)
.-+-.+|++++|..-|..++.....-..-. ..-.+.+-+.+..+.++++.|+.-..+.++. .|+ ....+
T Consensus 103 N~~F~ngdyeeA~skY~~Ale~cp~~~~e~---rsIly~Nraaa~iKl~k~e~aI~dcsKaiel--~pt------y~kAl 171 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALESCPSTSTEE---RSILYSNRAAALIKLRKWESAIEDCSKAIEL--NPT------YEKAL 171 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHHhCccccHHH---HHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc--Cch------hHHHH
Confidence 444556666666666666666532211110 1112234444556666666666666666653 231 11223
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhc
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEF 184 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~ 184 (651)
.+-+..|-+..++++|++=|+++++.
T Consensus 172 ~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 172 ERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 33344455556666666666666553
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=88.51 E-value=11 Score=30.13 Aligned_cols=68 Identities=12% Similarity=0.053 Sum_probs=49.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccc
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (651)
+...+..-+..+.++|+.|+-.+++.++.+.+ .+++...-.+..+|.+.|+..++-+++++.-+.+.+
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 44556677888889999999999999987644 788888889999999999999999999988777653
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=88.38 E-value=2.9 Score=35.96 Aligned_cols=97 Identities=10% Similarity=0.113 Sum_probs=67.7
Q ss_pred HHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchh
Q 006303 75 ADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG 154 (651)
Q Consensus 75 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~ 154 (651)
..+...+...|++++|+..+...+....+ +.+..++. .++.+....+|++++|+..++...+.+..+ ......
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~D-e~lk~l~~----lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elr 165 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKD-ENLKALAA----LRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELR 165 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchh-HHHHHHHH----HHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHh
Confidence 44567778899999999999998865322 22332222 578888999999999999999877654222 101112
Q ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 155 FKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.++++ ..|+-++|...|++.+...
T Consensus 166 GDill-------~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 166 GDILL-------AKGDKQEARAAYEKALESD 189 (207)
T ss_pred hhHHH-------HcCchHHHHHHHHHHHHcc
Confidence 22333 3799999999999998865
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=87.80 E-value=29 Score=34.08 Aligned_cols=66 Identities=15% Similarity=0.114 Sum_probs=47.2
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSP---DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
....+|..+...+.+.|.++.|...+.++...+... ++...-...+.+...|+..+|++.++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345577888888888888888888888887643111 334444556777788888888888877765
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.76 E-value=5.5 Score=29.77 Aligned_cols=46 Identities=17% Similarity=0.306 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 531 RVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 531 ~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
++.+-++.+....+.|++.+..+-+++|.+.+++..|.++|+-.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~ 70 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD 70 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 5555556666666666666666666666666666666666665553
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.16 E-value=6.5 Score=36.58 Aligned_cols=49 Identities=14% Similarity=0.203 Sum_probs=29.6
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
+.+++..++..=++.|+-||..+++.+|+.+.+.+++.+|..+...|+.
T Consensus 115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4445555555555566666666666666666666666666665555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.06 E-value=8.1 Score=35.98 Aligned_cols=101 Identities=16% Similarity=0.110 Sum_probs=71.5
Q ss_pred cCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC---Cccc--HHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCH
Q 006303 250 HLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN---VTLN--IYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADM 324 (651)
Q Consensus 250 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g---~~~~--~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~ 324 (651)
.|......+...++.......+.+.++..+-+++... ..|+ .++|-.++.. -+.+.++.++..=+..|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlllk--y~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLLK--YDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHHc--cChHHHHHHHhCcchhccccch
Confidence 3444556666667766666778888888887776541 1122 2333333222 3566888888888889999999
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.+++.+|+.+.+.+++.+|.++.-.|..
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 9999999999999999998888776664
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=86.83 E-value=5.5 Score=29.77 Aligned_cols=65 Identities=15% Similarity=0.178 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
+.=++.+-++.+....+.|++....+.+++|.|.+|+..|.++|+-.+.. +..+...|..+++-.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lqei 86 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQEI 86 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHHHH
Confidence 34456777788888889999999999999999999999999999988732 223566787777754
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=86.69 E-value=1.4 Score=25.34 Aligned_cols=32 Identities=13% Similarity=0.099 Sum_probs=26.5
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
..+..++..+...|++++|+..|++.++. .|+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l--~p~ 33 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL--DPN 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--CcC
Confidence 45677889999999999999999999988 554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.61 E-value=0.72 Score=26.93 Aligned_cols=24 Identities=17% Similarity=0.284 Sum_probs=12.3
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
|.+..+|+.+...|...|++++|+
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 344455555555555555555543
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.78 E-value=54 Score=35.07 Aligned_cols=69 Identities=7% Similarity=-0.126 Sum_probs=36.2
Q ss_pred HHhcCCChHHHHHHhhhCCCCC------ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCH
Q 006303 200 LCVNKPDVNLAIRYACIVPRAD------ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDY 272 (651)
Q Consensus 200 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 272 (651)
.+.+.+.+++|+...+..+.+. .+....+..+.-.|++++|-...-.|.. -+..-|..-+..+...++.
T Consensus 365 Wll~~k~yeeAl~~~k~~~~~~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~g----n~~~eWe~~V~~f~e~~~l 439 (846)
T KOG2066|consen 365 WLLEKKKYEEALDAAKASIGNEERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLG----NNAAEWELWVFKFAELDQL 439 (846)
T ss_pred HHHHhhHHHHHHHHHHhccCCccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhc----chHHHHHHHHHHhcccccc
Confidence 3444555555555554443322 3344556666666666666666666554 3444555555555555444
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.75 E-value=1.7 Score=25.07 Aligned_cols=32 Identities=13% Similarity=0.146 Sum_probs=27.1
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
..|..++..+...|++++|+..|++.++. +|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL--DPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH--CcC
Confidence 46778899999999999999999999988 554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.32 E-value=2.6 Score=24.27 Aligned_cols=27 Identities=26% Similarity=0.186 Sum_probs=15.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+|..+..+|...|++++|+..|++..+
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 455555666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=85.27 E-value=45 Score=33.72 Aligned_cols=168 Identities=5% Similarity=0.055 Sum_probs=94.5
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH-HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNM-YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 302 (651)
-..++.-.-+..+...-++.-.+.++ +.|+- ..|..|.. -......++.++|++..+.|-. .+..-
T Consensus 171 Aq~IMq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE~----~lg~s----- 237 (539)
T PF04184_consen 171 AQEIMQKAWRERNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGEA----SLGKS----- 237 (539)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHHH----hhchh-----
Confidence 33456666667777777777777776 34543 23332222 2345678888888887654310 00000
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc--cHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL--DVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 380 (651)
......-..++.+......+-..+-..|..++.+.|+.++|++.++++.+. .+. ...+...|+.++...+.+.
T Consensus 238 ~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke-----~p~~~~l~IrenLie~LLelq~Ya 312 (539)
T PF04184_consen 238 QFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKE-----FPNLDNLNIRENLIEALLELQAYA 312 (539)
T ss_pred hhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhh-----CCccchhhHHHHHHHHHHhcCCHH
Confidence 000000011122222222222334445667777889999999999999762 122 2346778999999999999
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTP-NTITWSSLINACA 409 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~ 409 (651)
++..++.+-.+...+. -...|+..+-.+.
T Consensus 313 d~q~lL~kYdDi~lpkSAti~YTaALLkaR 342 (539)
T PF04184_consen 313 DVQALLAKYDDISLPKSATICYTAALLKAR 342 (539)
T ss_pred HHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 9999998865432221 2345666554333
|
The molecular function of this protein is uncertain. |
| >KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=85.24 E-value=31 Score=32.55 Aligned_cols=95 Identities=9% Similarity=0.039 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHh----cCCCCcHHhHHHHHHHH-HhcCCHHHHHHHHHHHHhCCCccc----HH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKK----HLSSPNMYICRTIIDVC-GICGDYMKSRAIYEDLRSQNVTLN----IY 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~g~~~~----~~ 292 (651)
.+.......||+-||-+.|++.+.+..+ .|...|+..+..-+..+ ....-..+-++..+.+.+.|-.-+ ..
T Consensus 105 ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlK 184 (393)
T KOG0687|consen 105 EAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLK 184 (393)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHH
Confidence 4455567777888888777776665443 34444544443333322 222223344444444444543322 23
Q ss_pred HHHHHHHhhcCChHHHHHHHHHHH
Q 006303 293 VFNSLMNVNAHDLKFTLEVYKNMQ 316 (651)
Q Consensus 293 ~~~~ll~~~~~~~~~a~~~~~~m~ 316 (651)
+|..+-....+++.+|-.+|-+..
T Consensus 185 vY~Gly~msvR~Fk~Aa~Lfld~v 208 (393)
T KOG0687|consen 185 VYQGLYCMSVRNFKEAADLFLDSV 208 (393)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHc
Confidence 444444444456666655555543
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=85.15 E-value=55 Score=34.64 Aligned_cols=174 Identities=13% Similarity=0.080 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHhcCCCccccchHHHHHHH-----HhcCCChHHHHHHhhhCC---------CCCccHHHHHHHHhhcC-
Q 006303 171 VEMFVGLMEVLEEFRLPVKELDEEFRIVQL-----CVNKPDVNLAIRYACIVP---------RADILFCNFVREFGKKR- 235 (651)
Q Consensus 171 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~---------~~~~~~~~l~~~~~~~g- 235 (651)
...|..+++.....+. ......++.. +....+.+.|..++...- ..+.+.+.+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~----~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGH----SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcc----hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCC
Confidence 3567777777766552 2222222222 334567777777766541 23345556666666642
Q ss_pred ----CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc----CChH
Q 006303 236 ----DLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA----HDLK 306 (651)
Q Consensus 236 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~----~~~~ 306 (651)
+.+.|+.+|....+.|. |+....-..+..... ..+...|.+.|...-..|.. ....+.+++.... .+.+
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHH
Confidence 56667777777776554 443332222222222 23566777777777776643 2222222222211 3667
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.|..++.+..+.| .|...--...+..+.. ++.+.+.-.+..+..
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~ 425 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAE 425 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHH
Confidence 7777777777766 2232222223333333 556655555555554
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=84.92 E-value=8.8 Score=33.50 Aligned_cols=44 Identities=7% Similarity=0.091 Sum_probs=20.3
Q ss_pred CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
.+.+++..++-.+.++...+ -.+|+..+..|++.|.+.|+++.|
T Consensus 154 rD~~Kt~~ll~~~L~l~~~~-~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 154 RDPEKTIQLLLRALELSNPD-DNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred cCHHHHHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHhcchhhh
Confidence 34455555554444433222 234444555555555555554444
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.87 E-value=61 Score=34.89 Aligned_cols=126 Identities=16% Similarity=0.237 Sum_probs=65.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCC----CcHHhHHHH-HHHHHhcCCHHHHHHHHHHHHhCC---CcccHHHHHHH
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSS----PNMYICRTI-IDVCGICGDYMKSRAIYEDLRSQN---VTLNIYVFNSL 297 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~g---~~~~~~~~~~l 297 (651)
.++..+.+.+... |.+.+++..+.-.. +-...+..+ +..+...+++..|.+.++.+.... ..|-...+..+
T Consensus 105 ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l 183 (608)
T PF10345_consen 105 LLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASL 183 (608)
T ss_pred HHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHH
Confidence 3556666666555 77777765543211 222333333 222323368888888887765532 22334444444
Q ss_pred HHh----hcCChHHHHHHHHHHHHCC---------CCCCHHhHHHHHHHHH--hcCCHHHHHHHHHHHHH
Q 006303 298 MNV----NAHDLKFTLEVYKNMQKLG---------VMADMASYNILLKACC--LAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 298 l~~----~~~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~~--~~g~~~~a~~~~~~~~~ 352 (651)
+.+ ..+..+++.+.++++.... ..|-..+|..+++.++ ..|+++.+.+.++++..
T Consensus 184 ~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~ 253 (608)
T PF10345_consen 184 SEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ 253 (608)
T ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 443 2345666666666653321 1234556666666554 45666666666555543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.76 E-value=76 Score=35.89 Aligned_cols=53 Identities=17% Similarity=0.206 Sum_probs=27.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMSPDVVA--YTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~--~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+.+|-.+|+|.+|+.+..++.. ..|... -..|+.-+...++.-+|-++..+..
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 4555566666666666555542 112221 1345555666666666666655553
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.45 E-value=16 Score=37.52 Aligned_cols=82 Identities=15% Similarity=0.114 Sum_probs=40.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+..-|..|.++....+++..|.+.|..... |..|+-.+...|+-+....+-....+.|.. |
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d-------------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N 725 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD-------------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------N 725 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc-------------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------c
Confidence 344566666666666666666666654432 334444555555555444444444444321 1
Q ss_pred HHHHHHHhcCCHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~ 423 (651)
.-..+|...|+++++.+++..
T Consensus 726 ~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 726 LAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred hHHHHHHHcCCHHHHHHHHHh
Confidence 222234445666665555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=84.38 E-value=14 Score=28.04 Aligned_cols=76 Identities=13% Similarity=0.188 Sum_probs=48.1
Q ss_pred HHHHHHHHhcCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHH
Q 006303 551 WTILIDACGGSGNVE--GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH-YQIQPNLVTYITLLRA 627 (651)
Q Consensus 551 ~~~li~~~~~~g~~~--~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~l~~~ 627 (651)
|+.--..|....+.+ +..+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+. .| +....|..+++-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lqE 88 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHHH
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHHH
Confidence 333334444444433 5666667777778889999999999999999999999999998873 33 223377777664
Q ss_pred H
Q 006303 628 R 628 (651)
Q Consensus 628 ~ 628 (651)
+
T Consensus 89 l 89 (108)
T PF02284_consen 89 L 89 (108)
T ss_dssp H
T ss_pred H
Confidence 3
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=84.04 E-value=2.9 Score=25.40 Aligned_cols=27 Identities=22% Similarity=0.247 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 584 VAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 584 ~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
.+++.+...|...|++++|.+++++..
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al 29 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEAL 29 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence 466777777888888888888877765
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=83.86 E-value=46 Score=32.69 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=50.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
....+|..+...+.+.|.++.|...+.++.+.+... .+.+.-.-.+.....|+..+|+..++....
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 355678889999999999999999999988754211 334444455666778999999999988776
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=83.76 E-value=2.7 Score=25.58 Aligned_cols=29 Identities=28% Similarity=0.291 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
..+++.|...|...|++++|..++++..+
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 45789999999999999999999999875
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=83.00 E-value=23 Score=28.52 Aligned_cols=141 Identities=10% Similarity=0.128 Sum_probs=80.7
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
..-.|..++..+++.+..... +-. -++.++ +...+.-+-+-..++++.+-..- .. .
T Consensus 12 ~ildG~V~qGveii~k~v~Ss--ni~-----E~NWvI---CNiiDaa~C~yvv~~LdsIGkiF-Di-------------s 67 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNSS--NIK-----EYNWVI---CNIIDAADCDYVVETLDSIGKIF-DI-------------S 67 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHHS---HH-----HHTHHH---HHHHHH--HHHHHHHHHHHGGGS--G-------------G
T ss_pred HHHhchHHHHHHHHHHHcCcC--Ccc-----ccceee---eecchhhchhHHHHHHHHHhhhc-Cc-------------h
Confidence 345677888888888777632 111 111121 12222334444455555543311 11 1
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..++.......+.......+.....++.+..+|+-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++.+++.+.
T Consensus 68 ~C~NlKrVi~C~~~~n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~A 146 (161)
T PF09205_consen 68 KCGNLKRVIECYAKRNKLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEA 146 (161)
T ss_dssp G-S-THHHHHHHHHTT---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 234444444444444444566667788999999999999999998753 3477888889999999999999999999999
Q ss_pred HhCCCc
Q 006303 283 RSQNVT 288 (651)
Q Consensus 283 ~~~g~~ 288 (651)
.+.|++
T Consensus 147 CekG~k 152 (161)
T PF09205_consen 147 CEKGLK 152 (161)
T ss_dssp HHTT-H
T ss_pred HHhchH
Confidence 999875
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=82.62 E-value=4 Score=23.38 Aligned_cols=27 Identities=22% Similarity=0.174 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
.+..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 344555556666666666666666555
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=82.36 E-value=33 Score=29.87 Aligned_cols=114 Identities=16% Similarity=0.044 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNI--LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~ 380 (651)
+.....+.+...+-.....++.. +...+...|++++|...++..... +.|. .+--.|.......|.++
T Consensus 70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~------t~De~lk~l~~lRLArvq~q~~k~D 143 (207)
T COG2976 70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQ------TKDENLKALAALRLARVQLQQKKAD 143 (207)
T ss_pred hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc------chhHHHHHHHHHHHHHHHHHhhhHH
Confidence 44445555554321112222222 346678899999999999887741 2222 22234567778899999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+|+.+++.....+. .......-.+.+...|+.++|..-|.+..+.+
T Consensus 144 ~AL~~L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 144 AALKTLDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HHHHHHhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 99999988776543 23334455678889999999999999988875
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.19 E-value=15 Score=31.97 Aligned_cols=95 Identities=14% Similarity=0.135 Sum_probs=61.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
-+.+.|++++|..-|.....+...-.-......|..-..++.+.+.++.|+.-..+.++.+.. ......--..+|.+..
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~e 182 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKME 182 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhhh
Confidence 455678888888888888764211000111234555566778888888888888887776432 2223333345677788
Q ss_pred CHHHHHHHHHHHHHcC
Q 006303 413 LVEQAMHLFEEMLQAG 428 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~ 428 (651)
.++.|+.=|.++.+..
T Consensus 183 k~eealeDyKki~E~d 198 (271)
T KOG4234|consen 183 KYEEALEDYKKILESD 198 (271)
T ss_pred hHHHHHHHHHHHHHhC
Confidence 8888888888887763
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=82.05 E-value=1.8 Score=24.65 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=25.0
Q ss_pred hHHHHHhhhccCChHHHHHHHHHHHHhcCChh
Q 006303 74 YADMASKLAKDGRLEEFAMIVESVVVSEGNVS 105 (651)
Q Consensus 74 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~ 105 (651)
+-.++..+.+.|++++|+..|+.+++. .|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~--~P~ 32 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKR--YPD 32 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHH--STT
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHH--CcC
Confidence 445677788899999999999999988 554
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.72 E-value=69 Score=33.17 Aligned_cols=111 Identities=14% Similarity=0.067 Sum_probs=73.0
Q ss_pred hhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh-cCCCh
Q 006303 129 IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV-NKPDV 207 (651)
Q Consensus 129 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~ 207 (651)
.+.+...+..++. -.|. .+..+.+-+..-.+.|..+.+.++|++-++.- |.....|......+. ..|++
T Consensus 61 ~~~~r~~y~~fL~--kyPl------~~gyW~kfA~~E~klg~~~~s~~Vfergv~ai--p~SvdlW~~Y~~f~~n~~~d~ 130 (577)
T KOG1258|consen 61 VDALREVYDIFLS--KYPL------CYGYWKKFADYEYKLGNAENSVKVFERGVQAI--PLSVDLWLSYLAFLKNNNGDP 130 (577)
T ss_pred HHHHHHHHHHHHh--hCcc------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHhccCCCH
Confidence 3555666666664 3442 33333333334455788999999999987632 567777777665544 45666
Q ss_pred HHHHHHhhhCC-------CCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 208 NLAIRYACIVP-------RADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 208 ~~A~~~~~~~~-------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
+.-...|+.+. .+...|...+..-..++++.....+|+.+++
T Consensus 131 ~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRile 179 (577)
T KOG1258|consen 131 ETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILE 179 (577)
T ss_pred HHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence 66666666642 2346677777777888899999999999887
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=81.67 E-value=69 Score=33.16 Aligned_cols=187 Identities=13% Similarity=0.095 Sum_probs=109.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCch
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNT 476 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 476 (651)
+..+|..-+....+.|+.+.+.-+|+...-- +..-...|-..+.-....|+.+-+..++....+-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~------------ 362 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHV------------ 362 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcC------------
Confidence 4567777777778888888888888776521 011122333333333344666666655543322111
Q ss_pred hhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHH-HHHHHH
Q 006303 477 DRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHI-SWTILI 555 (651)
Q Consensus 477 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~-~~~~li 555 (651)
.-.|....+.+.+.-+.++...|..+++.+...- |+.. .-..-+
T Consensus 363 ---------------------------------k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~ 407 (577)
T KOG1258|consen 363 ---------------------------------KKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--PGLVEVVLRKI 407 (577)
T ss_pred ---------------------------------CCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHH
Confidence 0156677777777777788888888888887652 4433 222233
Q ss_pred HHHhcCCChHHHHH---HHHHHHHCCCCCCHHHHHHHHHH-----HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006303 556 DACGGSGNVEGALQ---ILKIMREDGMSPDVVAYTTAIKV-----CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRA 627 (651)
Q Consensus 556 ~~~~~~g~~~~A~~---~~~~~~~~~~~p~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~ 627 (651)
....+.|+.+.+.. ++..... | +-+..+.+.+.-- +.-.++.+.|..++.+|.+. ++++...|..+++.
T Consensus 408 ~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~ 484 (577)
T KOG1258|consen 408 NWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLRYKIREDADLARIILLEANDI-LPDCKVLYLELIRF 484 (577)
T ss_pred hHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHH
Confidence 44556777777773 3332222 1 1222222222222 33367888899999988865 57777788888887
Q ss_pred HHhcCCH
Q 006303 628 RSRYGSL 634 (651)
Q Consensus 628 ~~~~g~~ 634 (651)
+...+..
T Consensus 485 ~~~~~~~ 491 (577)
T KOG1258|consen 485 ELIQPSG 491 (577)
T ss_pred HHhCCcc
Confidence 7766643
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=81.48 E-value=50 Score=31.45 Aligned_cols=129 Identities=14% Similarity=0.222 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHhCCCcccHHHHHHHHHhhc--------CChHHHHHHHHHHHHCC---CCCCHHhHHHHHHHHHhcCC--
Q 006303 273 MKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--------HDLKFTLEVYKNMQKLG---VMADMASYNILLKACCLAGN-- 339 (651)
Q Consensus 273 ~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--------~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~g~-- 339 (651)
++.+.+++.|.+.|+.-+.++|-+.+.... .....+..+|+.|++.- -.++...+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 344555556666666555555444322211 12344566666665542 12233444444433 2222
Q ss_pred --HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC---HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 340 --TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW---WQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 340 --~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
.+.++.+|+.+.. .|-.+-|..-+.+-+-+++.... ...+..+++.+.+.|+++....|..+.-
T Consensus 157 ~l~~~~E~~Y~~L~~---~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 157 ELAERMEQCYQKLAD---AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHH---hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 2344555555554 23222233223333333322211 3466777777777777766666654443
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=80.85 E-value=22 Score=27.00 Aligned_cols=63 Identities=16% Similarity=0.245 Sum_probs=44.1
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
+.-+..+-++.+....+.|.+.+..+.+.+|.+.+++..|.++|+-++.+- .+....|..+++
T Consensus 25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lq 87 (108)
T PF02284_consen 25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQ 87 (108)
T ss_dssp -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHH
Confidence 445677777888888899999999999999999999999999999887641 112226665554
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.80 E-value=49 Score=30.90 Aligned_cols=95 Identities=11% Similarity=0.058 Sum_probs=60.3
Q ss_pred CCCHHHHHHHHHHHhh----cHHHHHHHHHHHHH-cCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC-CCCCCHHH
Q 006303 512 KPTTTTYNILMKACCT----DYYRVKALMNEMRT-VGLSPNHISWTILIDACGGSGNVEGALQILKIMRED-GMSPDVVA 585 (651)
Q Consensus 512 ~~~~~~~~~ll~~~~~----~~~~a~~~~~~~~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~-~~~p~~~~ 585 (651)
--|..+...+++.... ....-.++.+.+.. .|-.++..+...++..++..+++.+-.++|+..... +..-|...
T Consensus 161 i~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rp 240 (292)
T PF13929_consen 161 IFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRP 240 (292)
T ss_pred eeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCch
Confidence 4455666666666543 23333344444443 234567777777888888888888888888777654 55567777
Q ss_pred HHHHHHHHHhcCCHHHHHHHH
Q 006303 586 YTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 586 ~~~li~~~~~~g~~~~A~~~~ 606 (651)
|..+|......|+..-..++.
T Consensus 241 W~~FI~li~~sgD~~~~~kiI 261 (292)
T PF13929_consen 241 WAEFIKLIVESGDQEVMRKII 261 (292)
T ss_pred HHHHHHHHHHcCCHHHHHHHh
Confidence 888888888888765444333
|
|
| >PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins | Back alignment and domain information |
|---|
Probab=80.29 E-value=49 Score=30.62 Aligned_cols=104 Identities=12% Similarity=0.030 Sum_probs=55.0
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhc------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSE------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
........+.-..||..|+++.++-++.= .+|..-..-+......-.|.+++..++|.+++.+.-+-.+. |
T Consensus 37 lLe~Aad~LvV~rdF~aal~tCerglqsL~~~a~~ee~~~~~~evK~sLcvvGIQALAEmnrWreVLsWvlqyYq~---p 113 (309)
T PF07163_consen 37 LLEEAADLLVVHRDFQAALETCERGLQSLASDADAEEPAGSSLEVKCSLCVVGIQALAEMNRWREVLSWVLQYYQV---P 113 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchhhhhhhhhhhhHHHHHHHhhHHHHHHHHHHHhcC---c
Confidence 34444555556788889999988876641 12211111112333344677788888888877766554432 2
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
... -..++.+-+- .|.+.+......++-...+.
T Consensus 114 Ekl-PpkIleLCIL---LysKv~Ep~amlev~~~WL~ 146 (309)
T PF07163_consen 114 EKL-PPKILELCIL---LYSKVQEPAAMLEVASAWLQ 146 (309)
T ss_pred ccC-CHHHHHHHHH---HHHHhcCHHHHHHHHHHHHh
Confidence 111 1122222222 44556666666666555543
|
Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=80.11 E-value=91 Score=33.54 Aligned_cols=90 Identities=12% Similarity=0.136 Sum_probs=40.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG-VTPNTITWSSLINAC 408 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~ 408 (651)
....+.-.|+++.|++.+-.... ...+.+++...+.-|.-.+-.+... ..+.... -.|...-+..||..|
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~~~~------~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y 334 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYRNEF------NRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQY 334 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT--T-------HHHHHHHHHHHHHTT---------------------------HHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHhhcc------CcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHH
Confidence 34455567888888888766222 3455666555554443222211111 2222111 011125577778777
Q ss_pred Hh---cCCHHHHHHHHHHHHHcC
Q 006303 409 AN---AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 409 ~~---~g~~~~a~~~~~~~~~~~ 428 (651)
.+ ..+...|.++|-.+....
T Consensus 335 ~~~F~~td~~~Al~Y~~li~~~~ 357 (613)
T PF04097_consen 335 TRSFEITDPREALQYLYLICLFK 357 (613)
T ss_dssp HHTTTTT-HHHHHHHHHGGGGS-
T ss_pred HHHHhccCHHHHHHHHHHHHHcC
Confidence 75 456788888887776543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 75.2 bits (183), Expect = 4e-14
Identities = 17/112 (15%), Positives = 35/112 (31%), Gaps = 4/112 (3%)
Query: 534 ALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE---DGMSPDVVAYTTAI 590
A + LS C + + A +L + + Y +
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 591 KVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHE-VQQCL 641
R K+ + +K + P+L++Y L+ R +++CL
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 69.8 bits (169), Expect = 2e-12
Identities = 36/273 (13%), Positives = 72/273 (26%), Gaps = 47/273 (17%)
Query: 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439
QMA +++ A +P + L+ ++ + QA Q
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPN 499
+ C+ Q A L K K
Sbjct: 134 FKCCLLTDQLPLAHHLL--------------------VVHHGQRQKRKL----------- 162
Query: 500 SHYSSFDKRFSFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDA 557
T YN +M + + ++ ++ GL+P+ +S+ +
Sbjct: 163 -------------LTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 558 CGGSGNVEGALQ-ILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP 616
G G ++ L+ M ++G+ + + R+ LK + P
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 617 NLVTYITLLRARSRYGSLHEVQQCLAVYQDMWK 649
V LLR + + +
Sbjct: 270 PPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQC 302
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 58.3 bits (139), Expect = 6e-09
Identities = 25/272 (9%), Positives = 65/272 (23%), Gaps = 13/272 (4%)
Query: 350 VKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKV---KEDMLSAGVTPNTITWSSLIN 406
++ L K +A + +++++
Sbjct: 114 PSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVML 173
Query: 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV 466
A G ++ +++ + AG P+ LQ Q Q+
Sbjct: 174 GWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC------LEQM 227
Query: 467 ALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526
+ + +D+ ++ + V + P T +L
Sbjct: 228 SQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL----PPPVNTSKLLRDVYA 283
Query: 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAY 586
D ++ + + + +VE K ++ + +
Sbjct: 284 KDGRVSYPKLHLPLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRD 343
Query: 587 TTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL 618
+C + K + + P L
Sbjct: 344 QWEKALCRALRETKNRLEREVYEGRFSLYPFL 375
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 53.7 bits (127), Expect = 2e-07
Identities = 26/180 (14%), Positives = 55/180 (30%), Gaps = 8/180 (4%)
Query: 260 RTIIDVCGICGDYMKSRAI---YEDLRSQNVTLNIYVFNSLMNVNAHDLKFT--LEVYKN 314
C + + + + R + L + ++N++M A F + V
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190
Query: 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFA 374
++ G+ D+ SY L+ E ++ + +G+ +F + ++
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC--LEQMSQEGLKLQALF-TAVLLSEED 247
Query: 375 DAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ 434
A + KVK P + S L+ L + C Q
Sbjct: 248 RATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ 307
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.8 bits (162), Expect = 1e-11
Identities = 80/514 (15%), Positives = 169/514 (32%), Gaps = 116/514 (22%)
Query: 16 VATQTRLYNHRNKPNKHPVTKLFPL----ASSSSLSSIP--TVH----SSQTALLSTVRR 65
+ + RLYN K+ V++L P + L + S +T + V
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 66 DLS--SRND---YYADMASKLAKDGRLE---EFAMIVESVVVSEGNVSKFASMLSLEMVA 117
+ D ++ ++ + + + LE + ++ S + S L + +
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS-NIKLRIHSIQ 231
Query: 118 SGIVKSIREGR-IDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL---DSGEVEM 173
+ + + ++ +C++ VL + F+ S C+ LL +
Sbjct: 232 AELRRLLKSKPYENCLL-VLLNVQNAKA--WNAFNLS--------CKILLTTRFKQVTDF 280
Query: 174 FVGLME---VLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC-IVPRADILFCNFVR 229
L+ + + DE ++ ++ +L R PR + +R
Sbjct: 281 LSAATTTHISLDHHSMTLTP-DEVKSLLLKYLDCRPQDLP-REVLTTNPRRLSIIAESIR 338
Query: 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL----RSQ 285
+ D + + K TII+ + + R +++ L S
Sbjct: 339 DGLATWD---NWKHVNCDKLT----------TIIESSLNVLEPAEYRKMFDRLSVFPPSA 385
Query: 286 NV---TLNIY-----------VFNSLMN---VNAHDLKFTLEVY----KNMQKLGVMADM 324
++ L++ V N L V + T+ + + KL +
Sbjct: 386 HIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 325 -----ASYNILLKACCLAGNTVLAQE----IYGEVK-HL-EAKGVLKLDVFTYSTIVKVF 373
YNI + ++ Y + HL + ++ +F VF
Sbjct: 446 HRSIVDHYNIPKTFDS---DDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFR-----MVF 497
Query: 374 ADAKWWQMALKVKEDMLS---AGVTPNTIT----WSSLINACANAGLVEQAMHLFEEMLQ 426
D ++ + K++ D + +G NT+ + I C N E+ ++ + L
Sbjct: 498 LDFRF--LEQKIRHDSTAWNASGSILNTLQQLKFYKPYI--CDNDPKYERLVNAILDFLP 553
Query: 427 AGCEPN---SQCCNIL---LQACVEACQFDRAFR 454
E N S+ ++L L A EA F+ A +
Sbjct: 554 -KIEENLICSKYTDLLRIALMAEDEAI-FEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 66.0 bits (160), Expect = 3e-11
Identities = 67/420 (15%), Positives = 128/420 (30%), Gaps = 88/420 (20%)
Query: 221 DILFCN---FVREFGKKRDLVSALRAYDASK--KH-LSSPNMYICRTIIDVCGICGDYMK 274
DIL FV F K D+ ++ + + H + S +
Sbjct: 20 DILSVFEDAFVDNFDCK-DVQDMPKSILSKEEIDHIIMSKD---------------AVSG 63
Query: 275 SRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334
+ ++ L S+ + + F + V + KF + K Q+ Y
Sbjct: 64 TLRLFWTLLSKQEEM-VQKF--VEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRDRL 119
Query: 335 CLAGNTVLAQ-EIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADA---KWWQMALKVKEDM 389
N V A+ + +L+ + L +L V + K W +AL V
Sbjct: 120 Y-NDNQVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKTW-VALDVCLSY 174
Query: 390 LSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449
I W +L N + ++E L ++ + NI L+ + + Q
Sbjct: 175 KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQ- 231
Query: 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH--------------KDKQSITNTPN 495
RL +S + L + N + + K +T+ +
Sbjct: 232 AELRRLLKSKPYENCLLVL--------LNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLS 282
Query: 496 FVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILI 555
+H S + P ++L+K D R + L E+ T +P +S +I
Sbjct: 283 AATTTHISLDHHSMTLTPDEVK-SLLLK--YLD-CRPQDLPREVLTT--NPRRLS---II 333
Query: 556 DACGGSGNVEGALQILKIMREDG-MSPDVVAYTTAIKVCVRS------KRLKQAFSLFEE 608
+ D + TT I+ + +++ S+F
Sbjct: 334 ----------AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 41/239 (17%), Positives = 70/239 (29%), Gaps = 54/239 (22%)
Query: 432 NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQV---------ALGEDYDGNTDRISNM 482
+ +I++ RLF WTL Q L +Y I
Sbjct: 48 KEEIDHIIMSKDAV----SGTLRLF--WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT- 100
Query: 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTV 542
+ +Q T ++ D+ ++ YN+ R++ ++R
Sbjct: 101 --EQRQPSMMTRMYI-----EQRDRLYNDNQVFAKYNV---------SRLQ-PYLKLRQA 143
Query: 543 --GLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLK 600
L P +LID GSG AL + + + + L+
Sbjct: 144 LLELRPAKN---VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE 200
Query: 601 QAFSLFEEMKHYQIQPNLVTY----------ITLLRAR-SRYGSLHEVQQCLAVYQDMW 648
L YQI PN + I ++A R + CL V ++
Sbjct: 201 MLQKLL-----YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 2e-05
Identities = 42/341 (12%), Positives = 102/341 (29%), Gaps = 103/341 (30%)
Query: 2 RVVFGSSSSSSSAIVATQTRLY---NHRNKPNKHPVTK-LFPLASSSSLSSIP----TVH 53
+++ + + ++ T + +H + K L +P T +
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN 326
Query: 54 SSQTALLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSL 113
+ ++++ RD + D + K ++ I+ES SL
Sbjct: 327 PRRLSIIAESIRDGLATWDNW--------KHVNCDKLTTIIES---------------SL 363
Query: 114 EMVASGIVKSIREGRIDCVV---------GVLKKL-NELGVAPLELFDGSGFKLLKNECQ 163
++ + + + V +L + ++ + + + N+
Sbjct: 364 NVLEPAEYRKMFD---RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV--------NKLH 412
Query: 164 R--LLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY---ACIVP 218
+ L++ E + + + E + +L+ E+ + + V+ N+ + I P
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELK---VKLENEYALHRSIVDH--YNIPKTFDSDDLIPP 467
Query: 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278
D F + + + HL + R +
Sbjct: 468 YLDQYFYSHI--------------GH-----HLKNIEHP------------ERMTLFRMV 496
Query: 279 YEDLR--SQ---NVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314
+ D R Q + + S++N LKF YK
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNT-LQQLKF----YKP 532
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.9 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.89 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.88 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.8 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.77 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.77 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.76 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.75 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.75 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.74 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.73 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.7 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.7 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.68 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.65 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.65 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.65 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.58 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.54 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.52 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.52 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.5 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.49 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.48 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.45 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.45 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.44 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.41 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.41 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.4 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.4 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.36 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.34 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.32 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.29 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.29 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.29 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.28 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.28 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.27 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.25 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.19 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.15 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.14 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.08 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.05 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.04 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.02 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.97 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.93 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.92 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.92 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.9 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.88 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.87 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.86 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.83 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.82 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.79 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.79 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.79 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.77 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.75 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.74 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.73 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.71 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.69 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.67 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.66 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.63 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.59 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.59 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.59 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.59 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.57 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.57 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.54 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.53 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.52 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.49 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.47 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.44 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.44 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.44 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.44 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.43 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.41 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.38 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.37 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.37 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.36 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.35 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.33 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.32 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.32 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.31 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.27 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.27 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.24 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.24 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.23 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.22 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.21 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.21 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.2 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.19 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.19 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.17 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.15 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.15 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.13 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.12 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.12 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.11 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.11 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.11 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.1 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.08 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.07 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.07 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.07 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.07 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.03 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.01 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.01 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.01 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.99 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.94 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.93 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.92 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.89 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.88 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.87 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.87 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.82 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.8 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.8 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.79 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.78 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.73 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.72 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.6 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.59 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.57 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.52 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.47 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.41 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.36 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.35 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.34 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.26 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.25 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.25 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.21 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.18 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.17 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.16 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.15 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.09 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.99 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.98 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.76 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.61 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 96.46 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.39 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.23 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.1 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.06 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.0 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.73 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 95.64 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.63 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.25 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.25 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 95.21 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 94.47 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 94.45 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.41 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.27 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 94.25 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.32 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 93.15 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.73 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 92.51 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 90.78 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.08 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.63 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 89.21 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 88.52 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.79 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.7 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 86.67 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 86.66 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 86.19 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 85.94 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.45 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 85.29 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 84.86 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 84.53 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 84.32 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.24 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 83.52 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 80.49 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.9e-36 Score=319.30 Aligned_cols=460 Identities=7% Similarity=-0.015 Sum_probs=346.6
Q ss_pred HHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccch
Q 006303 114 EMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDE 193 (651)
Q Consensus 114 ~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 193 (651)
..++.++..+.+.|++++|+.+|+++.+ ..|+.. .+..+.. .+...|++++|+.+|+++... +.+...
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~~---~~~~~~ 152 (597)
T 2xpi_A 85 DYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPN----DAFWLAQ---VYCCTGDYARAKCLLTKEDLY---NRSSAC 152 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHH----HHHHHHH---HHHHTTCHHHHHHHHHHTCGG---GTCHHH
T ss_pred HHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCch----HHHHHHH---HHHHcCcHHHHHHHHHHHhcc---ccchhH
Confidence 3445566666777777777777777764 333321 2222333 333467777777777765432 344556
Q ss_pred HHHHHHHHhcCCChHHHHHHhhh-CCCC-------------------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACI-VPRA-------------------DILFCNFVREFGKKRDLVSALRAYDASKKHLSS 253 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~-~~~~-------------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 253 (651)
+..++..|.+.|++++|.++|+. .|.. ..+++.++.+|.+.|++++|++.|+++.+.+.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p- 231 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA- 231 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-
Confidence 66777777777777777777763 3333 46788999999999999999999999988542
Q ss_pred CcHHhHHHHHHHHHhcCCHHHHH--HH-HHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHH
Q 006303 254 PNMYICRTIIDVCGICGDYMKSR--AI-YEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYN 328 (651)
Q Consensus 254 ~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~ 328 (651)
.+...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..+. |++++|.++|+++.+. +++..+++
T Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~ 309 (597)
T 2xpi_A 232 KCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLL 309 (597)
T ss_dssp TCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHH
T ss_pred hhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHH
Confidence 24556666665544433322221 11 444554444455556666666654 6889999999998765 57889999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.++.+|.+.|++++|.++|+++.+. .+.+..+++.++.+|.+.|++++|..+++++.... +.+..++..++..|
T Consensus 310 ~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 383 (597)
T 2xpi_A 310 CKADTLFVRSRFIDVLAITTKILEI-----DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYY 383 (597)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 9999999999999999999998863 23467789999999999999999999999998653 44788899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++....
T Consensus 384 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------------------------- 437 (597)
T 2xpi_A 384 LCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF------------------------- 437 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-------------------------
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 99999999999999998764 4567789999999999999999999999887542
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG 566 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~ 566 (651)
+.+..+|+.++.+|. +++++|.++|+++.+.. +.+..+|+.++..|.+.|++++
T Consensus 438 -----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 493 (597)
T 2xpi_A 438 -----------------------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQT 493 (597)
T ss_dssp -----------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred -----------------------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHH
Confidence 346678888888876 48899999999998753 2378889999999999999999
Q ss_pred HHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 567 ALQILKIMRED----GMSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQC 640 (651)
Q Consensus 567 A~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 640 (651)
|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.
T Consensus 494 A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 572 (597)
T 2xpi_A 494 AINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITH 572 (597)
T ss_dssp HHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999998875 66787 7899999999999999999999999998754 45788999999999999999998875
Q ss_pred HHHHH
Q 006303 641 LAVYQ 645 (651)
Q Consensus 641 ~~~~~ 645 (651)
++..-
T Consensus 573 ~~~~l 577 (597)
T 2xpi_A 573 LHESL 577 (597)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-36 Score=320.30 Aligned_cols=483 Identities=12% Similarity=-0.008 Sum_probs=389.0
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|......+..++..+.+.|++++|+.+|++++.. .|+. ..+..++..+.+.|++++|+.+|+++... .+
T Consensus 80 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~ 148 (597)
T 2xpi_A 80 SLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNP-------NDAFWLAQVYCCTGDYARAKCLLTKEDLY--NR 148 (597)
T ss_dssp --CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCH-------HHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GT
T ss_pred hHHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCc-------hHHHHHHHHHHHcCcHHHHHHHHHHHhcc--cc
Confidence 4345788999999999999999999999999976 4442 23356788899999999999999998753 23
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--------------CCccccchHHHHHHHHhcCCChHHHHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--------------LPVKELDEEFRIVQLCVNKPDVNLAIR 212 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~~~A~~ 212 (651)
+.. ....++. .+.+.|++++|+.+|+++.... ..+.+...+..++..|.+.|++++|.+
T Consensus 149 ~~~----~~~~l~~---~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 221 (597)
T 2xpi_A 149 SSA----CRYLAAF---CLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKE 221 (597)
T ss_dssp CHH----HHHHHHH---HHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred chh----HHHHHHH---HHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHH
Confidence 222 3333333 5566899999999998532211 012347789999999999999999999
Q ss_pred HhhhC----CCCCccHHHHHHHHhhcCCHHHHHH--H-HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 213 YACIV----PRADILFCNFVREFGKKRDLVSALR--A-YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 213 ~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.|+.+ |.+..++..+...+...++.+.+.. + +..+...+..+...+|+.++..|.+.|++++|.++|+++.+.
T Consensus 222 ~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 301 (597)
T 2xpi_A 222 CYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL 301 (597)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG
T ss_pred HHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC
Confidence 99876 5555666666666655443333222 1 455555444445667788888899999999999999998876
Q ss_pred CCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH
Q 006303 286 NVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (651)
Q Consensus 286 g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (651)
.++..+|+.+...+. |++++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+.+. .+.+.
T Consensus 302 --~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~ 373 (597)
T 2xpi_A 302 --EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-----HPEKA 373 (597)
T ss_dssp --GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTSH
T ss_pred --CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-----CcccH
Confidence 578889998888765 89999999999998765 347889999999999999999999999999863 35578
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
.+|+.++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 451 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQH 451 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 899999999999999999999999998754 3368899999999999999999999999999875 55788999999999
Q ss_pred HhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHH
Q 006303 444 VEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK 523 (651)
Q Consensus 444 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 523 (651)
.+.|++++|.++|+++.... ..+..+|+.+..
T Consensus 452 ~~~g~~~~A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~ 483 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSYALF------------------------------------------------QYDPLLLNELGV 483 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC------------------------------------------------CCCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC------------------------------------------------CCChHHHHHHHH
Confidence 99999999999999987642 446788999988
Q ss_pred HHh--hcHHHHHHHHHHHHHc----CCCCc--HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 524 ACC--TDYYRVKALMNEMRTV----GLSPN--HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 524 ~~~--~~~~~a~~~~~~~~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
.+. +++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+
T Consensus 484 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~ 562 (597)
T 2xpi_A 484 VAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLH 562 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 887 4899999999999876 66787 7899999999999999999999999998864 3488999999999999
Q ss_pred cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRAR 628 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 628 (651)
.|++++|.++|+++.+. .|+ ...+..+..+|
T Consensus 563 ~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 563 KKIPGLAITHLHESLAI--SPNEIMASDLLKRAL 594 (597)
T ss_dssp TTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTT
T ss_pred hCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 99999999999999975 454 45555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.1e-29 Score=254.21 Aligned_cols=188 Identities=15% Similarity=0.217 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------HHHHHHHHHHHHHcCCCCCHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---------VEQAMHLFEEMLQAGCEPNSQ 434 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---------~~~a~~~~~~~~~~~~~~~~~ 434 (651)
..++.+|.+|++.|++++|+++|++|.+.|+.||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 34566666666666666666666666666666666666666666665443 456666666666666666666
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC
Q 006303 435 CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT 514 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 (651)
+|+.||.+|++.|++++|.++|
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~---------------------------------------------------------- 128 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMV---------------------------------------------------------- 128 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHH----------------------------------------------------------
T ss_pred HHHHHHHHHHhcCCHHHHHHHH----------------------------------------------------------
Confidence 6666666666666666655555
Q ss_pred HHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 515 TTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 515 ~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|+
T Consensus 129 ----------------------~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 129 ----------------------KQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp ----------------------HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred ----------------------HHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 4555666778888888888888888888888888888888888888888888888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 595 RSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
+.|+.++|.+++++|.+.|+.|+..||+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888888777653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-28 Score=247.54 Aligned_cols=204 Identities=15% Similarity=0.236 Sum_probs=174.9
Q ss_pred HHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC-----------ChH
Q 006303 239 SALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH-----------DLK 306 (651)
Q Consensus 239 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-----------~~~ 306 (651)
.+..+.+++.+.+..+. ...++.+|++|++.|++++|.++|++|.+.|+.||..+||++|.+++. ..+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 34455566666665543 346788889999999999999999999999999999999999987652 367
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
.|.++|++|...|+.||..||++||.+|++.|++++|.++|++|.+ .| +.||..+|+.+|.+|++.|++++|.++|
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~---~g-~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA---FG-IQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH---TT-CCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cC-CCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 8999999999999999999999999999999999999999999987 45 8999999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
++|.+.|+.||..||+.||.+|++.|+.++|.++|++|.+.+..|+..||+.++..|+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999988764
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.6e-24 Score=214.84 Aligned_cols=294 Identities=12% Similarity=0.064 Sum_probs=161.9
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
++..+.+.|++++|++.++.+++. .|+.. .++..+...+...|++++|...++...+. .|+. ..
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~------~~~~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~------~~ 68 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNT------GVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLL------AE 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCc------hH
Confidence 344556677788888877777776 55532 23334455567777777777777777663 2321 11
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCC
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRD 236 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~ 236 (651)
.+......+.+.|++++|+..|++++... |+ ...++..++..+.+.|+
T Consensus 69 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~------------------------------~~~~~~~l~~~~~~~g~ 116 (388)
T 1w3b_A 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PD------------------------------FIDGYINLAAALVAAGD 116 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TT------------------------------CHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cc------------------------------hHHHHHHHHHHHHHcCC
Confidence 12222224444677777777777766533 33 33456666667777777
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHH
Q 006303 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQ 316 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~ 316 (651)
+++|++.|+++.+..+ .+...+..+...+...|++++|.+.|+++.+.. |
T Consensus 117 ~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p--------------------------- 166 (388)
T 1w3b_A 117 MEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ--P--------------------------- 166 (388)
T ss_dssp SSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC--T---------------------------
T ss_pred HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--C---------------------------
Confidence 7777777777766421 234456666677777777777777777776542 1
Q ss_pred HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC
Q 006303 317 KLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (651)
Q Consensus 317 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 396 (651)
.+..+|..+...+...|++++|...|+++.+. .+.+...|..+...+...|++++|...+++..... +.
T Consensus 167 -----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~ 235 (388)
T 1w3b_A 167 -----NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PN 235 (388)
T ss_dssp -----TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TT
T ss_pred -----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cC
Confidence 13344444455555555555555555555442 12233444455555555555555555555544432 11
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+..++..+...+.+.|++++|...|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555442 2234445555555555555555555555544
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-24 Score=215.13 Aligned_cols=370 Identities=13% Similarity=0.071 Sum_probs=276.9
Q ss_pred hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 166 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.+.|++++|+..++++.... |++...+..++..+...|++++|..++... |.+..++..++..|.+.|++++|+
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHH
Confidence 34699999999998887754 555555555555555555555555544332 344445555555555555555555
Q ss_pred HHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC
Q 006303 242 RAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV 320 (651)
Q Consensus 242 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~ 320 (651)
+.|+++.+. .| +..+|..+..++.+.|++++|.+.|+++. +..
T Consensus 88 ~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al---------------------------------~~~- 131 (388)
T 1w3b_A 88 EHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSAL---------------------------------QYN- 131 (388)
T ss_dssp HHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHH---------------------------------HHC-
T ss_pred HHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------------------HhC-
Confidence 555555542 22 23345555555555555555555555444 332
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+.+...+..+...+...|++++|.+.|+++... .+.+..+|..+...+...|++++|...|+++.+.+. .+...
T Consensus 132 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~ 205 (388)
T 1w3b_A 132 PDLYCVRSDLGNLLKALGRLEEAKACYLKAIET-----QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDA 205 (388)
T ss_dssp TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHH
Confidence 224567777888999999999999999999874 244578899999999999999999999999998753 36788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
|..+...+...|++++|...|++..+.. +.+..++..+..+|.+.|++++|.+.|+++....
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------- 267 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ----------------- 267 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----------------
Confidence 9999999999999999999999998874 4467889999999999999999999999987642
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 558 (651)
+.+..+|..+...+. +++++|...++++.+.. +.+..++..+...+
T Consensus 268 -------------------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 315 (388)
T 1w3b_A 268 -------------------------------PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK 315 (388)
T ss_dssp -------------------------------SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred -------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence 234567788877776 48999999999998863 45788999999999
Q ss_pred hcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 006303 559 GGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYG 632 (651)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g 632 (651)
...|++++|...++++.+.. +.+..++..+..+|.+.|++++|.+.|+++.+. .|+ ...|..+...+...|
T Consensus 316 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTC
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHcc
Confidence 99999999999999998752 335788999999999999999999999999864 454 556666666655544
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-20 Score=195.97 Aligned_cols=443 Identities=11% Similarity=-0.020 Sum_probs=257.4
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|++++... |+ ..++..++..+...|++++|+..++++.+. .|+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~-------~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~- 73 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--ED-------PVFYSNLSACYVSVGDLKKVVEMSTKALEL--KPDYS- 73 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CC-------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CSCCH-
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cc-------HHHHHhHHHHHHHHhhHHHHHHHHHHHhcc--ChHHH-
Confidence 5677888899999999999999999999984 54 345567788899999999999999999985 34332
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC-----CccHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA-----DILFC 225 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~ 225 (651)
..+......+...|++++|+..|+++...+ |.+......++..+........+.+.+..+... .....
T Consensus 74 -----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 146 (514)
T 2gw1_A 74 -----KVLLRRASANEGLGKFADAMFDLSVLSLNG--DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQ 146 (514)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SCCGGGTHHHHHHHHHHHHHHHHTTC-----------------
T ss_pred -----HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCC
Confidence 233334445666899999999999998866 333333333333332222222211111100000 00000
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCC---------CCcHHhHHHHHHHHHh---cCCHHHHHHHHHHHHh-----CCCc
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLS---------SPNMYICRTIIDVCGI---CGDYMKSRAIYEDLRS-----QNVT 288 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~g~~ 288 (651)
.-...............+...+..... +.+...+......+.. .|++++|+..|+++.+ ....
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 226 (514)
T 2gw1_A 147 PAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKN 226 (514)
T ss_dssp ----------CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccC
Confidence 000000000000001111111111110 1124444444444443 7888888888888776 3111
Q ss_pred cc--------HHHHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 289 LN--------IYVFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 289 ~~--------~~~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
|+ ...+..+... ..|+++.|...|+++.+.. |+...+..+...+...|++++|.+.++.+...
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----- 299 (514)
T 2gw1_A 227 NEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL----- 299 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT-----
T ss_pred ccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc-----
Confidence 21 2222222222 2255666666666655543 22556666666777777777777777766652
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
.+.+...+..+...|...|++++|...++++...... +...+..+...+...|++++|...++++.+.. +.+...+..
T Consensus 300 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 377 (514)
T 2gw1_A 300 DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNF 377 (514)
T ss_dssp CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHH
Confidence 2334556666677777777777777777776665322 45566666667777777777777777766653 334556666
Q ss_pred HHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHH
Q 006303 439 LLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTY 518 (651)
Q Consensus 439 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (651)
+..+|.+.|++++|...++++...... .++
T Consensus 378 la~~~~~~~~~~~A~~~~~~a~~~~~~----------------------------------------------~~~---- 407 (514)
T 2gw1_A 378 FAEILTDKNDFDKALKQYDLAIELENK----------------------------------------------LDG---- 407 (514)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHT----------------------------------------------SSS----
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhhhc----------------------------------------------cch----
Confidence 666777777777777776655432110 000
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 519 NILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG---SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR 595 (651)
Q Consensus 519 ~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~ 595 (651)
..-....+..+...|.. .|++++|...++++.+.. +.+..++..+...|.+
T Consensus 408 -------------------------~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 461 (514)
T 2gw1_A 408 -------------------------IYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQ 461 (514)
T ss_dssp -------------------------CSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 00013366777777777 888888888888877643 2356677778888888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHH
Q 006303 596 SKRLKQAFSLFEEMKHYQIQPNLV 619 (651)
Q Consensus 596 ~g~~~~A~~~~~~m~~~g~~p~~~ 619 (651)
.|++++|.+.|++..+. .|+..
T Consensus 462 ~g~~~~A~~~~~~a~~~--~~~~~ 483 (514)
T 2gw1_A 462 QEDIDEAITLFEESADL--ARTME 483 (514)
T ss_dssp TTCHHHHHHHHHHHHHH--CSSHH
T ss_pred hcCHHHHHHHHHHHHHh--ccccH
Confidence 88888888888888754 35543
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-20 Score=193.44 Aligned_cols=430 Identities=9% Similarity=-0.011 Sum_probs=293.8
Q ss_pred HHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhc
Q 006303 159 KNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKK 234 (651)
Q Consensus 159 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~ 234 (651)
......+.+.|++++|+..|++++... | +...+..++.++...|++++|...++.+ |.+..++..++.+|.+.
T Consensus 10 ~~~g~~~~~~g~~~~A~~~~~~al~~~--p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 86 (514)
T 2gw1_A 10 KDKGNQFFRNKKYDDAIKYYNWALELK--E-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGL 86 (514)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHC--C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcC--c-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 333445556899999999999998866 4 4667777788888888888888776653 55567777788888888
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCChHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHDLKFTLEVY 312 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~~~~a~~~~ 312 (651)
|++++|+..|+.+.+.+. ++......++..+........+.+.+..+...+..|+...+...... ..........+.
T Consensus 87 g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 87 GKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp TCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred hhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 888888888888777543 23333444444444333333333333222222111111111110000 000111111111
Q ss_pred HHHHHCCC---------CCCHHhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----hhhcCCc----cccHHHHHHHHH
Q 006303 313 KNMQKLGV---------MADMASYNILLKACCL---AGNTVLAQEIYGEVKH-----LEAKGVL----KLDVFTYSTIVK 371 (651)
Q Consensus 313 ~~m~~~~~---------~~~~~~~~~ll~~~~~---~g~~~~a~~~~~~~~~-----~~~~~~~----~~~~~~~~~l~~ 371 (651)
..+..... +.+...+..+...+.. .|++++|...|+++.. ....... +.+...+..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 11111110 1224455555555554 8999999999999886 2101000 234567888999
Q ss_pred HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 372 VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
.+...|++++|...++++.... |+...+..+..++...|++++|...++++.+.. +.+...+..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998864 338888999999999999999999999998875 4567788999999999999999
Q ss_pred HHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcH
Q 006303 452 AFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDY 529 (651)
Q Consensus 452 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~ 529 (651)
|...+++..... +.+...+..+...+. +++
T Consensus 323 A~~~~~~~~~~~------------------------------------------------~~~~~~~~~l~~~~~~~~~~ 354 (514)
T 2gw1_A 323 AGKDFDKAKELD------------------------------------------------PENIFPYIQLACLAYRENKF 354 (514)
T ss_dssp HHHHHHHHHHTC------------------------------------------------SSCSHHHHHHHHHTTTTTCH
T ss_pred HHHHHHHHHHhC------------------------------------------------hhhHHHHHHHHHHHHHcCCH
Confidence 999999887542 223456666666665 489
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHH
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD----VVAYTTAIKVCVR---SKRLKQ 601 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~----~~~~~~li~~~~~---~g~~~~ 601 (651)
++|...++.+.+.. +.+..++..+...|...|++++|...++++.+... .++ ...|..+...+.. .|++++
T Consensus 355 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 433 (514)
T 2gw1_A 355 DDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIE 433 (514)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHH
T ss_pred HHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHH
Confidence 99999999998753 23567889999999999999999999999987321 112 4488899999999 999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 602 AFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVYQ 645 (651)
Q Consensus 602 A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 645 (651)
|.+.++++.+.. +.+...+..+..++.+.|++++|.+.++..-
T Consensus 434 A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 476 (514)
T 2gw1_A 434 ATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESA 476 (514)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999998753 4467888999999999999999888655443
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.5e-20 Score=193.76 Aligned_cols=430 Identities=10% Similarity=0.004 Sum_probs=304.9
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
...+...+..+.+.|++++|+..|+++.+. .|+.. ..+......+...|++++|+..+++++... |.+..
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~------~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~ 94 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPNEP------VFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSK 94 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCCCc------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHH
Confidence 455677788899999999999999999985 34332 233334445666899999999999999865 77888
Q ss_pred hHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC--CcHHhHHHHHHHHHhcC
Q 006303 193 EEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSS--PNMYICRTIIDVCGICG 270 (651)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g 270 (651)
.+..++..+...|++++|...++.+..++......+..+...+....|...++.+...... +........+..+....
T Consensus 95 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 174 (537)
T 3fp2_A 95 ALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIF 174 (537)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhc
Confidence 8999999999999999999988766544444444555666777778899999888653110 11111222333344555
Q ss_pred CHHHHHHHHHHHHhCCCcccHH-HHHHHHHhhc----------CChHHHHHHHHHHHHCCCCCC-------HHhHHHHHH
Q 006303 271 DYMKSRAIYEDLRSQNVTLNIY-VFNSLMNVNA----------HDLKFTLEVYKNMQKLGVMAD-------MASYNILLK 332 (651)
Q Consensus 271 ~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~----------~~~~~a~~~~~~m~~~~~~~~-------~~~~~~ll~ 332 (651)
+.+.+...+...... .+... ....+...+. ++++.|..+++++.+.. +.+ ..++..+..
T Consensus 175 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 175 DSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGI 251 (537)
T ss_dssp CHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHH
Confidence 665555544433222 22221 2222222221 36788888888887753 122 235666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 333 ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG 412 (651)
Q Consensus 333 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g 412 (651)
.+...|++++|.+.|+.+.. ..|+...+..+...+...|++++|...++++.... +.+..++..+...+...|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 324 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESIN------LHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQ 324 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHH------HCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHhcccHHHHHHHHHHHHh------cCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcC
Confidence 88889999999999999987 45677888899999999999999999999998764 336788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccC
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITN 492 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (651)
++++|...|+++.+.. +.+...+..+..+|...|++++|...++++....
T Consensus 325 ~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~----------------------------- 374 (537)
T 3fp2_A 325 DYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF----------------------------- 374 (537)
T ss_dssp CHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------------------
Confidence 9999999999998875 4456788889999999999999999999887642
Q ss_pred CCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCC-----CCcHHHHHHHHHHHhcC----
Q 006303 493 TPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGL-----SPNHISWTILIDACGGS---- 561 (651)
Q Consensus 493 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~-----~p~~~~~~~li~~~~~~---- 561 (651)
+.+...+..+...+. +++++|...++++.+... ......+..+...+...
T Consensus 375 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 435 (537)
T 3fp2_A 375 -------------------PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQD 435 (537)
T ss_dssp -------------------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC-
T ss_pred -------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhcc
Confidence 223445566655554 588999999998876421 11222344555667777
Q ss_pred ------CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 562 ------GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 562 ------g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|++++|...++++.+.. +.+...|..+...|.+.|++++|.+.|++..+.
T Consensus 436 ~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 436 PTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred chhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 99999999999998853 236788899999999999999999999999864
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=184.77 Aligned_cols=335 Identities=12% Similarity=0.038 Sum_probs=238.6
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+.+..+|.. ...+..++..+.+.|++++|+.+|+.+++. .|. ...++..++..+...|++++|+..|++
T Consensus 15 ~~~~~~~~p~~-~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 85 (450)
T 2y4t_A 15 TENLYFQSMAD-VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPD------NYIAYYRRATVFLAMGKSKAALPDLTK 85 (450)
T ss_dssp --------CHH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccccccccHHH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555666766 889999999999999999999999999987 555 245566778889999999999999999
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCcccc---chHHHHHHHHhcCCChHHHHHHhh
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKEL---DEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
+.+.+ |+. ...+......+...|++++|+..|+++.... |.+. ..+..++..+..
T Consensus 86 al~~~--p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~------------ 143 (450)
T 2y4t_A 86 VIQLK--MDF------TAARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEM------------ 143 (450)
T ss_dssp HHHHC--TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHH------------
T ss_pred HHhcC--CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHH------------
Confidence 99854 432 1223333445666899999999999998755 5555 555555443211
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
..+..+...+.+.|++++|+..|+++.+... .+..++..+..+|.+.|++++|+..|+++.+... .+...|.
T Consensus 144 ------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 215 (450)
T 2y4t_A 144 ------QRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFY 215 (450)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHH
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 1233445566667777777777777766422 3566677777777777777777777777765422 2345555
Q ss_pred HHHHhhc--CChHHHHHHHHHHHHCCCCCCHHhHHHH------------HHHHHhcCCHHHHHHHHHHHHHhhhcCCccc
Q 006303 296 SLMNVNA--HDLKFTLEVYKNMQKLGVMADMASYNIL------------LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (651)
Q Consensus 296 ~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (651)
.+...+. |++++|+..|+++.... +.+...+..+ ...+...|++++|.+.|+.+... .|
T Consensus 216 ~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~------~p 288 (450)
T 2y4t_A 216 KISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EP 288 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CC
Confidence 5555433 67777777777776542 2233444433 78899999999999999999873 34
Q ss_pred c-----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 362 D-----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 362 ~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+ ...+..+...+.+.|++++|+..++++.... +.+...|..+..+|...|++++|...|+++.+.. +.+...+
T Consensus 289 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~ 366 (450)
T 2y4t_A 289 SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIR 366 (450)
T ss_dssp SSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHH
T ss_pred cchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHH
Confidence 4 4478889999999999999999999998763 3378899999999999999999999999999864 3345566
Q ss_pred HHHHH
Q 006303 437 NILLQ 441 (651)
Q Consensus 437 ~~ll~ 441 (651)
..+..
T Consensus 367 ~~l~~ 371 (450)
T 2y4t_A 367 EGLEK 371 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66553
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-19 Score=183.87 Aligned_cols=370 Identities=9% Similarity=0.031 Sum_probs=207.0
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|.+...+..++..+.+.|++++|..+|+.+ |.+..++..++.+|...|++++|+..|+++.+.+. .+..++..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHHHHH
Confidence 666667777777777778888877777653 55667777888888888888888888888877532 3567788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCcccH---HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 006303 264 DVCGICGDYMKSRAIYEDLRSQNVTLNI---YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT 340 (651)
Q Consensus 264 ~~~~~~g~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 340 (651)
.+|.+.|++++|...|+++.+.... +. ..+..+...+ ....+..+...+...|++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~---------------------~~~~~~~~a~~~~~~~~~ 159 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSD---------------------EMQRLRSQALNAFGSGDY 159 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHH---------------------HHHHHHHHHHHHHHcCCH
Confidence 8888888888888888888765321 22 3333332210 000111223334445555
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
++|...|+.+... .+.+...+..+..+|...|++++|..+|+++.+.. +.+..++..+...|...|++++|...
T Consensus 160 ~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 233 (450)
T 2y4t_A 160 TAAIAFLDKILEV-----CVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSE 233 (450)
T ss_dssp HHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5555555554442 12234445555555555555555555555554432 22444555555555555555555555
Q ss_pred HHHHHHcCCCCCHHHHHHH------------HHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 421 FEEMLQAGCEPNSQCCNIL------------LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
|+++.+.. +.+...+..+ ..+|.+.|++++|...|+++......
T Consensus 234 ~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~----------------------- 289 (450)
T 2y4t_A 234 VRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS----------------------- 289 (450)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-----------------------
T ss_pred HHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-----------------------
Confidence 55554432 2222223222 45555555666666555555543210
Q ss_pred cccCCCCccCCCcccccccccccCCC--HHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPT--TTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV 564 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 564 (651)
.+. ...|..+...+. +++++|...++.+.+.. +.+...|..+..+|...|++
T Consensus 290 -----------------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~ 345 (450)
T 2y4t_A 290 -----------------------IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMY 345 (450)
T ss_dssp -----------------------SHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred -----------------------chHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCH
Confidence 011 223333333333 35556666666655432 23567788888888888888
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHH------------HHhcC-----CHHHHHHHHHHHH-HCC--CCCCH-----
Q 006303 565 EGALQILKIMREDGMSP-DVVAYTTAIKV------------CVRSK-----RLKQAFSLFEEMK-HYQ--IQPNL----- 618 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p-~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m~-~~g--~~p~~----- 618 (651)
++|...++++.+. .| +...+..+..+ |...| +.+++.+.++++. +.. ..|+.
T Consensus 346 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~~ 423 (450)
T 2y4t_A 346 DEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKK 423 (450)
T ss_dssp HHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHHH
T ss_pred HHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHHH
Confidence 8888888888874 34 35555555532 33333 4566777777632 210 11221
Q ss_pred --HHHHHHHHHHHhcCCHHH
Q 006303 619 --VTYITLLRARSRYGSLHE 636 (651)
Q Consensus 619 --~~~~~l~~~~~~~g~~~~ 636 (651)
..|..+..+|...|+.+.
T Consensus 424 a~~~~~~i~~ay~~L~d~~~ 443 (450)
T 2y4t_A 424 AEKKFIDIAAAKEVLSDPEM 443 (450)
T ss_dssp HHHHHHHHHHHHHHSSGGGG
T ss_pred HHHHHHHHHHHHHHhCCHHH
Confidence 256666666666666554
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.8e-18 Score=180.10 Aligned_cols=431 Identities=10% Similarity=-0.015 Sum_probs=301.4
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
....+..++..+.+.|++++|+..|+++++. .|+ ...++..++..+...|++++|+..++++.+. .|+..
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~ 93 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIEL--DPN------EPVFYSNISACYISTGDLEKVIEFTTKALEI--KPDHS 93 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHH--CTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchH
Confidence 3678889999999999999999999999998 665 3456677788899999999999999999985 34322
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC-------CCc
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR-------ADI 222 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~ 222 (651)
..+......+...|++++|+..|+. .... |+.... .+..+...+....|...+...-. ...
T Consensus 94 ------~~~~~la~~~~~~g~~~~A~~~~~~-~~~~--~~~~~~---~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~ 161 (537)
T 3fp2_A 94 ------KALLRRASANESLGNFTDAMFDLSV-LSLN--GDFDGA---SIEPMLERNLNKQAMKVLNENLSKDEGRGSQVL 161 (537)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHH-HC----------------CHHHHHHHHHHHHHHHHHCC-------CCC
T ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHH-HhcC--CCCChH---HHHHHHHHHHHHHHHHHHHHHHHhCcccccccc
Confidence 2233344456668999999999974 3322 222211 12223333444566666555311 112
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCcccHH-
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC--------GDYMKSRAIYEDLRSQNVTLNIY- 292 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~g~~~~~~- 292 (651)
.....+..+....+.+.+...+..... ..+. ......+...+... |++++|+.+|+.+.+.... +..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~ 238 (537)
T 3fp2_A 162 PSNTSLASFFGIFDSHLEVSSVNTSSN--YDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPL 238 (537)
T ss_dssp CCHHHHHHHHHTSCHHHHHHTSCCCCS--SCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHH
T ss_pred chHhHHHHHHHhcChHHHHHHHhhccc--cccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchh
Confidence 334455666667777766665544333 1122 12333333333222 4788899888888876433 111
Q ss_pred ------HHHHHHHh--hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH
Q 006303 293 ------VFNSLMNV--NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF 364 (651)
Q Consensus 293 ------~~~~ll~~--~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 364 (651)
.+..+-.. ..|+++.|...|++..... |+...+..+...+...|++++|.+.|+.+... .+.+..
T Consensus 239 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~ 311 (537)
T 3fp2_A 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL-----NPEYPP 311 (537)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH-----CTTCHH
T ss_pred hHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc-----CCCCHH
Confidence 12222222 3378889999999888763 56788888999999999999999999999874 245677
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
++..+...+...|++++|...++++..... .+...+..+...+...|++++|..+++++.+.. +.+...+..+..+|.
T Consensus 312 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 389 (537)
T 3fp2_A 312 TYYHRGQMYFILQDYKNAKEDFQKAQSLNP-ENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILT 389 (537)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 899999999999999999999999987643 356788899999999999999999999999875 456678889999999
Q ss_pred hcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH--H
Q 006303 445 EACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL--M 522 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--l 522 (651)
..|++++|...|+++......... .......+... +
T Consensus 390 ~~g~~~~A~~~~~~a~~~~~~~~~------------------------------------------~~~~~~~~~~~a~~ 427 (537)
T 3fp2_A 390 DRGDFDTAIKQYDIAKRLEEVQEK------------------------------------------IHVGIGPLIGKATI 427 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHCSS------------------------------------------CSSTTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCcchh------------------------------------------hHHHHHHHHHHHHH
Confidence 999999999999988765421100 01111111111 2
Q ss_pred HHHh----------hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC
Q 006303 523 KACC----------TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRED 577 (651)
Q Consensus 523 ~~~~----------~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 577 (651)
.... +++++|...++.+.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus 428 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 491 (537)
T 3fp2_A 428 LARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL 491 (537)
T ss_dssp HHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 2223 67899999999998863 236788999999999999999999999999984
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=9.1e-17 Score=158.85 Aligned_cols=328 Identities=13% Similarity=0.037 Sum_probs=215.8
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
+..+..++..+...|++++|+..|+.++.. .|.. ..++..++..+...|++++|+..++++.+. .|+..
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~------~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~- 71 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDG--DPDN------YIAYYRRATVFLAMGKSKAALPDLTKVIAL--KMDFT- 71 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--Cccc------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCcc-
Confidence 567788899999999999999999999988 5652 445667788899999999999999999985 34321
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCc---cccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPV---KELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNF 227 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l 227 (651)
..+......+...|++++|+..++++.... | .....+..++.... ...+..+
T Consensus 72 -----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~------------------~~~~~~~ 126 (359)
T 3ieg_A 72 -----AARLQRGHLLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADE------------------MQRLRSQ 126 (359)
T ss_dssp -----HHHHHHHHHHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHH------------------HHHHHHH
T ss_pred -----hHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHH------------------HHHHHHH
Confidence 223333445566899999999999998754 5 55555554432110 0112223
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCCh
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDL 305 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~ 305 (651)
...+...|++++|++.++++.+... .+..++..+...+...|++++|...++.+.+... .+...+..+...+ .|++
T Consensus 127 a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~ 204 (359)
T 3ieg_A 127 ALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLKS-DNTEAFYKISTLYYQLGDH 204 (359)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCS-CCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 4445555555555555555544321 2344455555555555555555555555544321 1223333333322 2455
Q ss_pred HHHHHHHHHHHHCCCCCCHHhH------------HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-H----HHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASY------------NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V----FTYST 368 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~------------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~----~~~~~ 368 (651)
+.|...+++..+.. +.+...+ ..+...+.+.|++++|...++.+... .|+ . ..+..
T Consensus 205 ~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~ 277 (359)
T 3ieg_A 205 ELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT------EPSVAEYTVRSKER 277 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCchHHHHHHHHH
Confidence 55555555554432 1122222 23466788999999999999999874 233 2 23556
Q ss_pred HHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 369 IVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 369 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..++...|++++|...+++..+.. +.+..++..+...+.+.|++++|...|+++.+.. +.+...+..+..+...
T Consensus 278 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~ 352 (359)
T 3ieg_A 278 ICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRL 352 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence 7889999999999999999998863 3378899999999999999999999999999874 3345566666655443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.80 E-value=9.5e-16 Score=151.49 Aligned_cols=312 Identities=10% Similarity=-0.005 Sum_probs=222.7
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+...|++++|+..|+++.+... .+..++..+...+...|++++|+..|+++.+..
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------------- 67 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--------------- 67 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC---------------
Confidence 3456677778888888888888888877432 356777888888888888888888888776542
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc----cHHHHHHH--------
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL----DVFTYSTI-------- 369 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----~~~~~~~l-------- 369 (651)
+.+...+..+...+...|++++|...|+.+.+ ..| +...+..+
T Consensus 68 -------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~~ 122 (359)
T 3ieg_A 68 -------------------MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK------SNPSEQEEKEAESQLVKADEMQR 122 (359)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------CCcchHHHHHHHHHHHcCChHHHHHHHHHHHh------cCCcccChHHHHHHHHHHHHHHH
Confidence 12445566666666677777777777776665 233 23333333
Q ss_pred ----HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 370 ----VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 370 ----~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|..
T Consensus 123 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~ 200 (359)
T 3ieg_A 123 LRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQ 200 (359)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 567778888888888888887654 3367778888888888888888888888887764 4567778888888888
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHH----
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNIL---- 521 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---- 521 (651)
.|++++|...+++...... .+...+..+
T Consensus 201 ~~~~~~A~~~~~~a~~~~~------------------------------------------------~~~~~~~~~~~~~ 232 (359)
T 3ieg_A 201 LGDHELSLSEVRECLKLDQ------------------------------------------------DHKRCFAHYKQVK 232 (359)
T ss_dssp HTCHHHHHHHHHHHHHHCT------------------------------------------------TCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhCc------------------------------------------------cchHHHHHHHHHH
Confidence 8888888888887765321 112222111
Q ss_pred --------HHHH--hhcHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 522 --------MKAC--CTDYYRVKALMNEMRTVGLSPNH----ISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 522 --------l~~~--~~~~~~a~~~~~~~~~~~~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
...+ .+++++|...++++.+.... +. ..+..+...|.+.|++++|...+++..+.. +.+..+|.
T Consensus 233 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 310 (359)
T 3ieg_A 233 KLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHH
Confidence 2222 25899999999999885422 22 235567889999999999999999998852 33788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRAR 628 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~ 628 (651)
.+...|...|++++|.+.|+++.+. .|+ ...+..+..+.
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHH
Confidence 9999999999999999999999964 455 44455554443
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=7.4e-16 Score=150.36 Aligned_cols=303 Identities=9% Similarity=-0.045 Sum_probs=229.1
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
.+.+...+..++..+...|++++|+++|+++.+... .+...+..++..+...|++++|...++++.+..
T Consensus 18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---------- 86 (330)
T 3hym_B 18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLY---------- 86 (330)
T ss_dssp --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC----------
T ss_pred chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC----------
Confidence 456667788888888888999999999998887532 345567777788888889988888888877542
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG-NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD 375 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 375 (651)
+.+...+..+...+...| ++++|.+.|+++... .+.+...|..+...+..
T Consensus 87 ------------------------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~ 137 (330)
T 3hym_B 87 ------------------------PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTL-----EKTYGPAWIAYGHSFAV 137 (330)
T ss_dssp ------------------------TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTT-----CTTCTHHHHHHHHHHHH
T ss_pred ------------------------cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHH
Confidence 235667788888888888 899999999988863 23456778888899999
Q ss_pred ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 376 AKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
.|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...
T Consensus 138 ~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 215 (330)
T 3hym_B 138 ESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKW 215 (330)
T ss_dssp HTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHH
Confidence 99999999999998876432 45667778889999999999999999998875 55678888999999999999999999
Q ss_pred HHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHH
Q 006303 456 FRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKAL 535 (651)
Q Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~ 535 (651)
+++......... +
T Consensus 216 ~~~a~~~~~~~~----------------------------------------------~--------------------- 228 (330)
T 3hym_B 216 FLDALEKIKAIG----------------------------------------------N--------------------- 228 (330)
T ss_dssp HHHHHHHHTTTS----------------------------------------------C---------------------
T ss_pred HHHHHHHhhhcc----------------------------------------------c---------------------
Confidence 987664321000 0
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006303 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQ 615 (651)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 615 (651)
......+..++..+...|...|++++|...+++..+.. +.+...|..+...|.+.|++++|.+.++++.+.. +
T Consensus 229 -----~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p 301 (330)
T 3hym_B 229 -----EVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-R 301 (330)
T ss_dssp -----SCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-S
T ss_pred -----cccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-C
Confidence 00012345678888888889999999999999888753 2366788888889999999999999999887542 3
Q ss_pred CCHHHHHHHHHHH-HhcCCHH
Q 006303 616 PNLVTYITLLRAR-SRYGSLH 635 (651)
Q Consensus 616 p~~~~~~~l~~~~-~~~g~~~ 635 (651)
.+...+..+..++ ...|+.+
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC--
T ss_pred CchHHHHHHHHHHHHHhCchh
Confidence 3566777777777 4566543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.4e-14 Score=145.73 Aligned_cols=347 Identities=12% Similarity=0.035 Sum_probs=278.5
Q ss_pred ccchHHHHHHHHhc----CCChHHHHHHhhhC--CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhH
Q 006303 190 ELDEEFRIVQLCVN----KPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYIC 259 (651)
Q Consensus 190 ~~~~~~~l~~~~~~----~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~ 259 (651)
+......++..|.. .+++++|..++.+. ..+..++..|...|.. .+++++|++.|++..+.| +...+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 114 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQAQ 114 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 44556667777776 78888998888764 3455778889999988 899999999999998854 56777
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh------cCChHHHHHHHHHHHHCCCCCCHHhHHH
Q 006303 260 RTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNI 329 (651)
Q Consensus 260 ~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 329 (651)
..|...|.. .+++++|+..|++..+.|. ...+..+-..+ .++.+.|.+.|++..+.| +...+..
T Consensus 115 ~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~---~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~ 188 (490)
T 2xm6_A 115 QNLGVMYHEGNGVKVDKAESVKWFRLAAEQGR---DSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQ 188 (490)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 888888888 7899999999999988763 33333333332 358999999999998865 6788888
Q ss_pred HHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 330 LLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 330 ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
|...|.. .++.++|.+.|++..+ ..+...+..+...|.. .+++++|...|++..+.| +...+
T Consensus 189 Lg~~y~~g~g~~~~~~~A~~~~~~a~~-------~~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 189 LGYMYSRGLGVERNDAISAQWYRKSAT-------SGDELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHhcCCCCCcCHHHHHHHHHHHHH-------CCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 8888888 8999999999999886 2366778888888876 889999999999998865 56677
Q ss_pred HHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHhhhccccccccccc
Q 006303 402 SSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-----CQFDRAFRLFRSWTLSKTQVALGEDY 472 (651)
Q Consensus 402 ~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (651)
..+...|.. .++.++|...|++..+.+ +...+..+...|... +++++|...|++..+.+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~--------- 326 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG--------- 326 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---------
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---------
Confidence 778888887 899999999999998764 556777788888877 89999999999876532
Q ss_pred CCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-----hcHHHHHHHHHHHHHcCCCCc
Q 006303 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-----TDYYRVKALMNEMRTVGLSPN 547 (651)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-----~~~~~a~~~~~~~~~~~~~p~ 547 (651)
+...+..+-..+. ++.++|...|++..+.| +
T Consensus 327 -----------------------------------------~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~ 362 (490)
T 2xm6_A 327 -----------------------------------------DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---E 362 (490)
T ss_dssp -----------------------------------------CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---C
T ss_pred -----------------------------------------CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---C
Confidence 2234444444443 27899999999999863 6
Q ss_pred HHHHHHHHHHHhc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 006303 548 HISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQI 614 (651)
Q Consensus 548 ~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~ 614 (651)
...+..|...|.. .+++++|..+|++..+.| +...+..+...|.+ .++.++|.+.|++..+.+.
T Consensus 363 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 363 KAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 7788888888888 899999999999999864 67888889999988 8999999999999997663
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-14 Score=155.86 Aligned_cols=377 Identities=11% Similarity=0.094 Sum_probs=192.6
Q ss_pred HhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 117 ASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 117 ~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
..++..|...|.+.+|+++|+++.- .|+.+..+.....++-.+....+.++..+.+.-++... ...
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d-----------~~e 1054 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYD-----------APD 1054 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhcc-----------HHH
Confidence 3456667777777777777777772 33322222222222221222222333333333332111 233
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHH
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSR 276 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 276 (651)
++..+...|.+++|..+|++......+.+.++ ...+++++|.++.+++. +..+|..+..++...|++++|+
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDVNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHH
Confidence 56666677777777777776643333323222 25566777776666542 2456667777777777777777
Q ss_pred HHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc
Q 006303 277 AIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK 356 (651)
Q Consensus 277 ~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 356 (651)
+.|.+. -|...|..++.++.+.|++++|.+.|....+.
T Consensus 1126 dsYiKA---------------------------------------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~--- 1163 (1630)
T 1xi4_A 1126 DSYIKA---------------------------------------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--- 1163 (1630)
T ss_pred HHHHhc---------------------------------------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---
Confidence 776542 24445555666666666666666666655542
Q ss_pred CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 357 GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 357 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
.++....+.++.+|++.+++++...+. . .++...|..+...|...|++++|..+|... ..|
T Consensus 1164 ---~~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny 1224 (1630)
T 1xi4_A 1164 ---ARESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 1224 (1630)
T ss_pred ---cccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHH
Confidence 223223334566666666655433221 1 234444555666666666666666666653 245
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHH
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTT 516 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 516 (651)
..+..+|.+.|++++|.+.+++ ..+..
T Consensus 1225 ~rLA~tLvkLge~q~AIEaarK-----------------------------------------------------A~n~~ 1251 (1630)
T 1xi4_A 1225 GRLASTLVHLGEYQAAVDGARK-----------------------------------------------------ANSTR 1251 (1630)
T ss_pred HHHHHHHHHhCCHHHHHHHHHH-----------------------------------------------------hCCHH
Confidence 6666666666666666666654 22334
Q ss_pred HHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 517 TYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCV 594 (651)
Q Consensus 517 ~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~ 594 (651)
+|..+-.+|.. ++..|...... +..++..+..++..|.+.|.+++|+.+++...... .-....|+-+...|+
T Consensus 1252 aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLya 1325 (1630)
T 1xi4_A 1252 TWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 1325 (1630)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHH
Confidence 45444444432 33333332221 22345555566666666666666666666555432 223334444544444
Q ss_pred hc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHH
Q 006303 595 RS--KRLKQAFSLFEEMKHYQIQP------NLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 595 ~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
+. ++..++.++|..-. ++.| +...|.-++..|.+.|+++.|.
T Consensus 1326 Ky~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1326 KFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred hCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 43 23334444433221 2222 3455666666666666666554
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.4e-14 Score=151.77 Aligned_cols=406 Identities=12% Similarity=0.102 Sum_probs=282.3
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
+++-....+.+|...|.+.+|+++|++..-. |+.|... .+..+.++....+. +..+..+...+..... .
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n--~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d-~---- 1052 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEH--RNLQNLLILTAIKA-DRTRVMEYINRLDNYD-A---- 1052 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCccccc--HHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc-H----
Confidence 3555667778888999999999999999843 4423221 22333355555555 5566666655544211 1
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
.-+.. .+.+.|.+++|..+|++... . ...+...+...+++++|.++..+. ..+.+|..+..
T Consensus 1053 ------~eIA~---Iai~lglyEEAf~IYkKa~~------~---~~A~~VLie~i~nldrAiE~Aerv-n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1053 ------PDIAN---IAISNELFEEAFAIFRKFDV------N---TSAVQVLIEHIGNLDRAYEFAERC-NEPAVWSQLAK 1113 (1630)
T ss_pred ------HHHHH---HHHhCCCHHHHHHHHHHcCC------H---HHHHHHHHHHHhhHHHHHHHHHhc-CCHHHHHHHHH
Confidence 11222 33348999999999998521 1 111222333778899999998876 44688999999
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKF 307 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~ 307 (651)
++.+.|++++|++.|.+. .|...|..++..+.+.|++++|++.|...++..-.+...+. +..+++ +++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~--LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETE--LIFALAKTNRLAE 1185 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHH--HHHHHHhhcCHHH
Confidence 999999999999999663 46778888999999999999999999887766433333333 444444 45554
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
...+ .. .++...|..+...|...|++++|...|..+ ..|..+..+|++.|++++|.+.++
T Consensus 1186 le~f----I~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-------------~ny~rLA~tLvkLge~q~AIEaar 1245 (1630)
T 1xi4_A 1186 LEEF----IN---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------------SNFGRLASTLVHLGEYQAAVDGAR 1245 (1630)
T ss_pred HHHH----Hh---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-------------hHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3322 22 356677778999999999999999999864 368899999999999999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVA 467 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 467 (651)
+.. +..+|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1246 KA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~L----- 1309 (1630)
T 1xi4_A 1246 KAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGL----- 1309 (1630)
T ss_pred HhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----
Confidence 762 6789999999999999999988876643 456677888999999999999999999876532
Q ss_pred cccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCC-CHHHHHHHHHHHhh----cHHHHHHHHHHHHHc
Q 006303 468 LGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKP-TTTTYNILMKACCT----DYYRVKALMNEMRTV 542 (651)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~----~~~~a~~~~~~~~~~ 542 (651)
.+ ....|+-+...+++ +..++.++|..-..
T Consensus 1310 --------------------------------------------eraH~gmftELaiLyaKy~peklmEhlk~f~~rin- 1344 (1630)
T 1xi4_A 1310 --------------------------------------------ERAHMGMFTELAILYSKFKPQKMREHLELFWSRVN- 1344 (1630)
T ss_pred --------------------------------------------ChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-
Confidence 22 23455555555654 34455555543322
Q ss_pred CCCC------cHHHHHHHHHHHhcCCChHHHHHHHH-------------HHHHCCCCCCHHHHHHHHHHHHhcC
Q 006303 543 GLSP------NHISWTILIDACGGSGNVEGALQILK-------------IMREDGMSPDVVAYTTAIKVCVRSK 597 (651)
Q Consensus 543 ~~~p------~~~~~~~li~~~~~~g~~~~A~~~~~-------------~~~~~~~~p~~~~~~~li~~~~~~g 597 (651)
++| +...|..++-.|.+.|+++.|....- +.+. -..|...|...+.-|...+
T Consensus 1345 -i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1345 -IPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred -cchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 222 56679999999999999998883321 1111 1346667766666666554
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-14 Score=150.40 Aligned_cols=404 Identities=9% Similarity=0.042 Sum_probs=242.3
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTII 263 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 263 (651)
|.+...|..++.. .+.|++++|..+|+++ |.+...|..++..+.+.|++++|.++|+++.+. .|+...|...+
T Consensus 10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~ 86 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYL 86 (530)
T ss_dssp TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHH
T ss_pred CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHH
Confidence 4555555555553 4455666665555442 455556666666666666666666666666653 24555555555
Q ss_pred HHH-HhcCCHHHHHH----HHHHHHhC-CCcc-cHHHHHHHHHhh-----------cCChHHHHHHHHHHHHCCCCCCHH
Q 006303 264 DVC-GICGDYMKSRA----IYEDLRSQ-NVTL-NIYVFNSLMNVN-----------AHDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 264 ~~~-~~~g~~~~a~~----~~~~~~~~-g~~~-~~~~~~~ll~~~-----------~~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
... ...|+.++|.+ +|+..... |..| +...|...+... .|+++.|..+|++...........
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~ 166 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQ 166 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHH
Confidence 322 23455554443 45444332 3332 334454444432 245666666666666521111112
Q ss_pred hHHHHHHHH-------------HhcCCHHHHHHHHHHHHHhhhcC-----Ccccc--------HHHHHHHHHHHHcc---
Q 006303 326 SYNILLKAC-------------CLAGNTVLAQEIYGEVKHLEAKG-----VLKLD--------VFTYSTIVKVFADA--- 376 (651)
Q Consensus 326 ~~~~ll~~~-------------~~~g~~~~a~~~~~~~~~~~~~~-----~~~~~--------~~~~~~l~~~~~~~--- 376 (651)
.|....... ...+++..|..+++........- .++|+ ...|...+......
T Consensus 167 ~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~ 246 (530)
T 2ooe_A 167 LWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLR 246 (530)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCcc
Confidence 222211110 12345666776666543221100 02333 23455544332221
Q ss_pred -cCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHH
Q 006303 377 -KWW----QMALKVKEDMLSAGVTPNTITWSSLINACAN-------AGLVE-------QAMHLFEEMLQAGCEPNSQCCN 437 (651)
Q Consensus 377 -~~~----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~ 437 (651)
++. +.+..+|++++... +-+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|.
T Consensus 247 ~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~ 325 (530)
T 2ooe_A 247 TEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYF 325 (530)
T ss_dssp CSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHH
T ss_pred CCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHH
Confidence 222 46777888888753 3367788888887775 68876 8889999888632244677888
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-H-
Q 006303 438 ILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T- 515 (651)
Q Consensus 438 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 515 (651)
.++..+.+.|++++|..+|+++... .|+ .
T Consensus 326 ~~~~~~~~~g~~~~A~~~~~~al~~-------------------------------------------------~p~~~~ 356 (530)
T 2ooe_A 326 AYADYEESRMKYEKVHSIYNRLLAI-------------------------------------------------EDIDPT 356 (530)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHS-------------------------------------------------SSSCHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhCc-------------------------------------------------cccCch
Confidence 8888888899999999999987753 333 2
Q ss_pred HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006303 516 TTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDA-CGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKV 592 (651)
Q Consensus 516 ~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~ 592 (651)
..|..++..+. ++.++|..+|+...+... .+...|...... +...|+.++|..+|++..+.. +-+...|..++..
T Consensus 357 ~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 357 LVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 46666666554 478889999998887521 123333332222 335889999999999888742 2357888889998
Q ss_pred HHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 593 CVRSKRLKQAFSLFEEMKHYQ-IQPN--LVTYITLLRARSRYGSLHEVQQCLAVYQD 646 (651)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 646 (651)
+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.++.+...+
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999998653 2332 45788888888889998887775544433
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.76 E-value=1.5e-14 Score=150.79 Aligned_cols=438 Identities=9% Similarity=0.001 Sum_probs=263.2
Q ss_pred hccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHH
Q 006303 61 STVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLN 140 (651)
Q Consensus 61 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~ 140 (651)
+++..+|.. ...+..++.. .+.|++++|..+|+++++. .|.... .....+..+.+.|++++|..+|++++
T Consensus 4 ~al~~~P~~-~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~------~w~~~~~~~~~~~~~~~a~~~~~ral 73 (530)
T 2ooe_A 4 KKLEENPYD-LDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGR------FWKLYIEAEIKAKNYDKVEKLFQRCL 73 (530)
T ss_dssp HHHHHCTTC-HHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHH------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred hHhhhCCCC-HHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHH------HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 445566776 7888888884 7789999999999999988 676433 33344566778899999999999999
Q ss_pred HcCCCccccccchhhHHHHHHHHHHhhcchHHHHHH----HHHHHHhc-CCCccccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 141 ELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVG----LMEVLEEF-RLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 141 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~----~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
+. .|+.. +...++.. .....|+.+.|.+ +|++.+.. |..+++...|...+........
T Consensus 74 ~~--~p~~~----lw~~~~~~--~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~--------- 136 (530)
T 2ooe_A 74 MK--VLHID----LWKCYLSY--VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEA--------- 136 (530)
T ss_dssp TT--CCCHH----HHHHHHHH--HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCC---------
T ss_pred hc--CCChH----HHHHHHHH--HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCC---------
Confidence 74 45321 21112210 1112455555544 66655432 3334444444433332211100
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
. . .+...|+++.|+.+|++..+.........|..........|. .+..
T Consensus 137 ----~-~-------~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~--------------------~~~~ 184 (530)
T 2ooe_A 137 ----V-G-------SYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINI--------------------HLAK 184 (530)
T ss_dssp ----C-S-------STTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCH--------------------HHHH
T ss_pred ----c-c-------cHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhch--------------------hHHH
Confidence 0 0 012367888889999888872111112233322221111110 0111
Q ss_pred HHHHhhcCChHHHHHHHHHHH------HCC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHH
Q 006303 296 SLMNVNAHDLKFTLEVYKNMQ------KLG---VMAD--------MASYNILLKACCLA----GNT----VLAQEIYGEV 350 (651)
Q Consensus 296 ~ll~~~~~~~~~a~~~~~~m~------~~~---~~~~--------~~~~~~ll~~~~~~----g~~----~~a~~~~~~~ 350 (651)
.++....+++..|..++..+. +.. ++|+ ...|...+...... ++. ..+..+|++.
T Consensus 185 ~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 185 KMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 111111123334444443321 111 1222 13344333322221 222 3666777777
Q ss_pred HHhhhcCCccccHHHHHHHHHHHHc-------ccCHH-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006303 351 KHLEAKGVLKLDVFTYSTIVKVFAD-------AKWWQ-------MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQ 416 (651)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~ 416 (651)
... .+.+...|..++..+.+ .|+++ +|..+|++..+.-.+.+...|..++..+.+.|++++
T Consensus 265 l~~-----~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~ 339 (530)
T 2ooe_A 265 LLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEK 339 (530)
T ss_dssp HHH-----HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHH
T ss_pred HHh-----CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHH
Confidence 764 35567777777777765 67766 888888888752123357778888888888888888
Q ss_pred HHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCC
Q 006303 417 AMHLFEEMLQAGCEPN-S-QCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (651)
Q Consensus 417 a~~~~~~~~~~~~~~~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (651)
|..+|+++.+. .|+ . ..|..++..+.+.|++++|.++|++..+...
T Consensus 340 A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~------------------------------ 387 (530)
T 2ooe_A 340 VHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR------------------------------ 387 (530)
T ss_dssp HHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT------------------------------
T ss_pred HHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC------------------------------
Confidence 88888888875 333 2 4777777777788888888888888765321
Q ss_pred CccCCCcccccccccccCCCHHHHHHHHHH-HhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHH
Q 006303 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKA-CCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKI 573 (651)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~ 573 (651)
..+.......++.. ..++.++|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++
T Consensus 388 ----------------~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~ 450 (530)
T 2ooe_A 388 ----------------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFER 450 (530)
T ss_dssp ----------------CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHH
T ss_pred ----------------CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHH
Confidence 01111122222222 2357888888888887742 23678899999999999999999999999
Q ss_pred HHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 574 MREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 574 ~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
....+ ..| ....|...+......|+.+.+.++++++.+
T Consensus 451 al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 451 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99863 223 255888888888899999999999999875
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-16 Score=156.36 Aligned_cols=282 Identities=13% Similarity=0.014 Sum_probs=202.6
Q ss_pred chHHHHHH-HHHHHHhcCCC--ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 169 GEVEMFVG-LMEVLEEFRLP--VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 169 ~~~~~A~~-~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
|++++|+. .+++....... ..+...+..++..+...|++++|...+..+ |.+..++..++..|.+.|++++|+
T Consensus 39 ~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 118 (368)
T 1fch_A 39 SDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAI 118 (368)
T ss_dssp -------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHH
Confidence 55555555 55544332211 011334555566666666666666655543 445567777788888888888888
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHH------------------HHHHHHhhcC
Q 006303 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYV------------------FNSLMNVNAH 303 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~------------------~~~ll~~~~~ 303 (651)
..|+++.+... .+..++..+...+...|++++|+..|+++........... ...++ ..|
T Consensus 119 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 195 (368)
T 1fch_A 119 SALRRCLELKP-DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL--SDS 195 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH--HHH
T ss_pred HHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh--hcc
Confidence 88888777532 3567788888888888888888888888776543211111 11111 347
Q ss_pred ChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
++++|...|+++.+.... ++..++..+...+...|++++|...|+++... .+.+...+..+...+...|++++|
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~g~~~~A 270 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEA 270 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHcCCHHHH
Confidence 888999999998876421 15788999999999999999999999999874 244678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHHhcCChhHH
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP----------NSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~----------~~~~~~~ll~~~~~~g~~~~a 452 (651)
...|+++.+.. +.+...+..+..+|.+.|++++|...|+++.+..... ...+|..+..+|...|++++|
T Consensus 271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 349 (368)
T 1fch_A 271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY 349 (368)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence 99999998764 3467899999999999999999999999998753111 267899999999999999999
Q ss_pred HHHHHHh
Q 006303 453 FRLFRSW 459 (651)
Q Consensus 453 ~~~~~~~ 459 (651)
..++++.
T Consensus 350 ~~~~~~~ 356 (368)
T 1fch_A 350 GAADARD 356 (368)
T ss_dssp HHHHTTC
T ss_pred HHhHHHH
Confidence 9988743
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.4e-15 Score=148.41 Aligned_cols=281 Identities=11% Similarity=-0.049 Sum_probs=222.6
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcC-C
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKR-D 236 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g-~ 236 (651)
...+...|++++|+.++++++... |.+...+..++..+...|++++|..++..+ |.+..++..+...+...| +
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHK 106 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhh
Confidence 335555799999999999998865 777777888888899999999999887764 677788999999999999 9
Q ss_pred HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--hhcCChHHHHHHHHH
Q 006303 237 LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--VNAHDLKFTLEVYKN 314 (651)
Q Consensus 237 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~~~~~~~~a~~~~~~ 314 (651)
+++|++.|+++.+... .+..+|..+...+...|++++|+..|+++.+.... +...+..+.. ...|++++|...+++
T Consensus 107 ~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (330)
T 3hym_B 107 NEHARRYLSKATTLEK-TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQ 184 (330)
T ss_dssp HHHHHHHHHHHHTTCT-TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999987532 35778999999999999999999999999876433 2233333333 345899999999999
Q ss_pred HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC----ccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 315 MQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 315 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
..+.. +.+...+..+...+...|++++|...++++........ .+.....+..+...|...|++++|...++++.
T Consensus 185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 263 (330)
T 3hym_B 185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL 263 (330)
T ss_dssp HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 98764 34678888999999999999999999999887532110 13345688899999999999999999999998
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCh
Q 006303 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV-EACQF 449 (651)
Q Consensus 391 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~g~~ 449 (651)
+.. +.+...+..+..++.+.|++++|...|+++.+.. +.+...+..+..++. ..|+.
T Consensus 264 ~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 264 VLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC-
T ss_pred hhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCch
Confidence 764 3367788889999999999999999999988764 446667777777773 44544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.1e-13 Score=139.41 Aligned_cols=345 Identities=11% Similarity=0.004 Sum_probs=278.6
Q ss_pred CCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCccc
Q 006303 219 RADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLN 290 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~ 290 (651)
.+..+...|...|.. .+++++|+..|++..+.| +..++..|...|.. .+++++|.+.|++..+.| +
T Consensus 37 g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 110 (490)
T 2xm6_A 37 GEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---L 110 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C
T ss_pred CCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 344677778888887 899999999999998853 56788889999988 899999999999998876 3
Q ss_pred HHHHHHHHHhh------cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 291 IYVFNSLMNVN------AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 291 ~~~~~~ll~~~------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
...+..+-..+ .+++++|...|++..+.| +...+..|...|.. .+++++|.+.|++..+.
T Consensus 111 ~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~------- 180 (490)
T 2xm6_A 111 PQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ------- 180 (490)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 33333333332 358999999999998875 67788888888887 78999999999998862
Q ss_pred ccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCC
Q 006303 361 LDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
.+...+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|..+|++..+.+ +
T Consensus 181 ~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 181 GNVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred CCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 367888888888887 899999999999999875 66788888888886 789999999999998764 5
Q ss_pred HHHHHHHHHHHHh----cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 433 SQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 433 ~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
...+..+...|.. .++.++|++.|++..+.+
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~--------------------------------------------- 289 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG--------------------------------------------- 289 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---------------------------------------------
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---------------------------------------------
Confidence 5677777778887 899999999999876432
Q ss_pred cccCCCHHHHHHHHHHH--h-----hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHCC
Q 006303 509 FSFKPTTTTYNILMKAC--C-----TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDG 578 (651)
Q Consensus 509 ~~~~~~~~~~~~ll~~~--~-----~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~ 578 (651)
+...+..+-..+ . ++.++|...+++..+.| +...+..+...|...| +.++|.++|++..+.
T Consensus 290 -----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~- 360 (490)
T 2xm6_A 290 -----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK- 360 (490)
T ss_dssp -----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT-
T ss_pred -----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC-
Confidence 222333333333 2 58899999999999864 4567777888887767 789999999999986
Q ss_pred CCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHH
Q 006303 579 MSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLAVY 644 (651)
Q Consensus 579 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~ 644 (651)
.+...+..+...|.. .+++++|.++|++..+.| +...+..+...+.+ .++.++|...++.-
T Consensus 361 --~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 361 --GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 378889999999998 899999999999999875 57778888888888 89999888755543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=153.68 Aligned_cols=264 Identities=8% Similarity=-0.130 Sum_probs=188.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+.+.|++++|++.|+++.+... .+..+|..+...|...|++++|+..|+++.+..
T Consensus 66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--------------- 129 (365)
T 4eqf_A 66 PGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--------------- 129 (365)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---------------
Confidence 4588889999999999999999999987532 367788999999999999999999998877541
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-----------HHHHHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-----------FTYSTIV 370 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-----------~~~~~l~ 370 (651)
+.+..++..+...|...|++++|.+.|+++.+. .|+. ..+..+.
T Consensus 130 -------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~l~ 184 (365)
T 4eqf_A 130 -------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQ------NPKYKYLVKNKKGSPGLTRRMS 184 (365)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHCC---------------
T ss_pred -------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHh------CccchHHHhhhccchHHHHHHH
Confidence 235678888888999999999999999988873 2321 2233456
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
..+...|++++|..+++++...... .+..++..+...+...|++++|...|+++.+.. +.+..+|..+..+|.+.|++
T Consensus 185 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 185 KSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp ----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 7778888888888888888765322 156777788888888888888888888877764 44566777777788888888
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcH
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDY 529 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~ 529 (651)
++|...|++.....
T Consensus 264 ~~A~~~~~~al~~~------------------------------------------------------------------ 277 (365)
T 4eqf_A 264 EEAVEAYTRALEIQ------------------------------------------------------------------ 277 (365)
T ss_dssp HHHHHHHHHHHHHC------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcC------------------------------------------------------------------
Confidence 87777776654321
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHhcCC
Q 006303 530 YRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG---MS--------PDVVAYTTAIKVCVRSKR 598 (651)
Q Consensus 530 ~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~---~~--------p~~~~~~~li~~~~~~g~ 598 (651)
+.+..++..+...|.+.|++++|...|+++.+.. .. .+...|..+..++...|+
T Consensus 278 ---------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 278 ---------------PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp ---------------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred ---------------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 1235667777777888888888888888776621 00 125677778888888888
Q ss_pred HHHHHHHHHH
Q 006303 599 LKQAFSLFEE 608 (651)
Q Consensus 599 ~~~A~~~~~~ 608 (651)
.+.+.++.++
T Consensus 343 ~~~a~~~~~~ 352 (365)
T 4eqf_A 343 PELFQAANLG 352 (365)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHHh
Confidence 8777766654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-15 Score=150.99 Aligned_cols=150 Identities=15% Similarity=0.071 Sum_probs=104.6
Q ss_pred hcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 410 NAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
..|++++|...|+++.+..... +..++..+..+|.+.|++++|...|+++....
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------------------- 247 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR------------------------- 247 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------------
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------------------
Confidence 6677777777777777654211 46667777777777777777777776544221
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGAL 568 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~ 568 (651)
+.+..++..+...|...|++++|.
T Consensus 248 --------------------------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 248 --------------------------------------------------------PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp --------------------------------------------------------TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------------------------------------cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 124567777788888888888888
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----------CCCHHHHHHHHHHHHhcCCHHHHH
Q 006303 569 QILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQI----------QPNLVTYITLLRARSRYGSLHEVQ 638 (651)
Q Consensus 569 ~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~~~~l~~~~~~~g~~~~a~ 638 (651)
..++++.+.. +.+...+..+..+|.+.|++++|.+.|+++.+..- .....+|..+..++...|+.++|.
T Consensus 272 ~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 8888887742 23567788888888888888888888888764210 112578888888888888888877
Q ss_pred HHH
Q 006303 639 QCL 641 (651)
Q Consensus 639 ~~~ 641 (651)
.+.
T Consensus 351 ~~~ 353 (368)
T 1fch_A 351 AAD 353 (368)
T ss_dssp HHH
T ss_pred HhH
Confidence 654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.6e-18 Score=176.64 Aligned_cols=119 Identities=14% Similarity=0.203 Sum_probs=63.3
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCccccccccc
Q 006303 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRF 509 (651)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (651)
.....+|+++|++|++.|++++|.++|++|.... ..
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~--------------------------------------------~k 159 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQR--------------------------------------------QK 159 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSH--------------------------------------------HH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--------------------------------------------hc
Confidence 3344578888888888888888888887764211 01
Q ss_pred ccCCCHHHHHHHHHHHhh--cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHCCCCCCHHHH
Q 006303 510 SFKPTTTTYNILMKACCT--DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNV-EGALQILKIMREDGMSPDVVAY 586 (651)
Q Consensus 510 ~~~~~~~~~~~ll~~~~~--~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~~~~~~~~p~~~~~ 586 (651)
|+.||.+|||+||.+||+ +.++|.++|++|.+.|+.||..|||+||+++++.|+. ++|.++|++|.+.|+.||..+|
T Consensus 160 G~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY 239 (1134)
T 3spa_A 160 RKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFT 239 (1134)
T ss_dssp HTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhc
Confidence 134444445444444442 3444444444444444444444444444444444442 3444444444444444444444
Q ss_pred HHHHHH
Q 006303 587 TTAIKV 592 (651)
Q Consensus 587 ~~li~~ 592 (651)
++++.+
T Consensus 240 ~~ll~~ 245 (1134)
T 3spa_A 240 AVLLSE 245 (1134)
T ss_dssp HSCCCH
T ss_pred ccccCh
Confidence 444443
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-17 Score=172.36 Aligned_cols=124 Identities=17% Similarity=0.200 Sum_probs=115.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
.-..||++||++||+.|++++|.++|+.|.++...| ..||..+||+||.+||+.|++++|.++|++|.+.|+.||.+||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG-~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKR-KLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHH-TTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcC-CCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 346799999999999999999999999998765556 7899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 402 SSLINACANAGL-VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 402 ~~ll~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
+.+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 999999999998 588999999999999999999999999877664
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-16 Score=150.23 Aligned_cols=235 Identities=12% Similarity=0.077 Sum_probs=60.4
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|+.++|.++++++. ...+|+.+++++.+.|++++|.+.|.+.+ +...|..++..+...|++++|++.++..
T Consensus 16 ~~~ld~A~~fae~~~-------~~~vWs~La~A~l~~g~~~eAIdsfika~-D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 16 IGNLDRAYEFAERCN-------EPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccCHHHHHHHHHhCC-------ChHHHHHHHHHHHHcCCHHHHHHHHHcCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 578899999998862 22478899999999999999998887754 4458888888888889999999977776
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
.+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.+...+. |.+++|...|..+ .
T Consensus 88 rk~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~ 149 (449)
T 1b89_A 88 RKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 149 (449)
T ss_dssp -----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------T
T ss_pred HHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------h
Confidence 663 3556778888888999999888877764 234344444444433 4455555555544 2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|..+...+ ..+..-...++
T Consensus 150 n~~~LA~~L~~Lg~yq~AVea~~KA----------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv 214 (449)
T 1b89_A 150 NFGRLASTLVHLGEYQAAVDGARKA----------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELI 214 (449)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHH----------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHH
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHc----------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHH
Confidence 3445555555555555555555443 14445555555555555555553333221 11222233344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
..|.+.|.+++|..+++...... +-....|+-+--+|+
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ 252 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYS 252 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHH
Confidence 45555555555555555544333 333344444444443
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.3e-14 Score=147.46 Aligned_cols=364 Identities=11% Similarity=-0.050 Sum_probs=239.8
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc-------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE-------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
....|+.|+..+...|++++|++.|++.++.. .+|. ...++.+++..|...|++++|+..+++..+.
T Consensus 50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~------~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i 123 (472)
T 4g1t_A 50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIR------SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHV 123 (472)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTT------THHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchH------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 46789999999999999999999999987641 1222 2445678888999999999999999998764
Q ss_pred C---CCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH---HhcCCChHHHHHHhhh
Q 006303 143 G---VAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL---CVNKPDVNLAIRYACI 216 (651)
Q Consensus 143 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~A~~~~~~ 216 (651)
. ..+........+.....+. .....+++++|++.|++.++.. |++...+..++.+ +...++.++|+..+.+
T Consensus 124 ~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 124 CEKFSSPYRIESPELDCEEGWTR-LKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHSCCSSCCCCHHHHHHHHHHH-HHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred hHhcccccchhhHHHHHHHHHHH-HHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 1 1111111111111111111 1122468999999999999855 7777777776655 3456777778776655
Q ss_pred C----CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc
Q 006303 217 V----PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 217 ~----~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~ 288 (651)
. |.+..++..+...+.. .+++++|.+.+++...... .+..++..+...|...|++++|+..|++..+..+.
T Consensus 201 al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~ 279 (472)
T 4g1t_A 201 AIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN 279 (472)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC
Confidence 3 6666677666655554 4678899999999887532 46778999999999999999999999999876432
Q ss_pred ccHHHHHHHHHhhc---------------------CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 289 LNIYVFNSLMNVNA---------------------HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIY 347 (651)
Q Consensus 289 ~~~~~~~~ll~~~~---------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 347 (651)
+...+..+-.++. +..+.|...++...+.. +.+..++..+...+...|++++|.+.|
T Consensus 280 -~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~ 357 (472)
T 4g1t_A 280 -NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYF 357 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHH
Confidence 3344443322211 13466777777776654 345678888999999999999999999
Q ss_pred HHHHHhhhcCCccccHH----HHHHHHH-HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVF----TYSTIVK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFE 422 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~----~~~~l~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 422 (651)
++.... .++.. .+..+.. .+...|++++|+..|++.++. .|+...... ....+.++++
T Consensus 358 ~kaL~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~ 420 (472)
T 4g1t_A 358 QKEFSK------ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAK 420 (472)
T ss_dssp HHHHHS------CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHH
T ss_pred HHHHhc------CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHH
Confidence 998863 33332 2233332 335789999999999999876 344332222 2344455666
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 423 EMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 423 ~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
...+.+ +.+..+|..+..+|...|++++|++.|++..+.+
T Consensus 421 ~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 421 MRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 666654 5567789999999999999999999999887654
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.69 E-value=3.8e-15 Score=147.63 Aligned_cols=256 Identities=12% Similarity=0.004 Sum_probs=193.2
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC 269 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 269 (651)
+..++..+.+.|++++|..+|+.+ |.+..++..++..|.+.|++++|+..|+++.+... .+..++..+..+|...
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~ 146 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP-NNLKALMALAVSYTNT 146 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHcc
Confidence 444455555555555555554442 45557778888888888888888888888887532 3577888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCcccHH-HH----------HHHHHh--hcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHH
Q 006303 270 GDYMKSRAIYEDLRSQNVTLNIY-VF----------NSLMNV--NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACC 335 (651)
Q Consensus 270 g~~~~a~~~~~~~~~~g~~~~~~-~~----------~~ll~~--~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~ 335 (651)
|++++|+..|+++.+.. |+.. .+ ..+... ..|++++|...|+++.+.... ++..++..+...+.
T Consensus 147 g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 147 SHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp TCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 88888888888887653 2211 11 111222 236788899999988876421 26889999999999
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|.+.|+++.+. .+.+..+|..+..+|...|++++|+..|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 225 ~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALTV-----RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HCCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 999999999999999874 34567899999999999999999999999998864 336889999999999999999
Q ss_pred HHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 416 QAMHLFEEMLQAGCE-----------PNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 416 ~a~~~~~~~~~~~~~-----------~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+|...|+++.+.... .+...|..+..++...|+.+.+.+..+.
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999875311 1356789999999999999988877764
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-14 Score=140.24 Aligned_cols=264 Identities=10% Similarity=-0.102 Sum_probs=184.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..++..+...|++++|+.+|+++.+... .+..++..+...+...|++++|...|+++.+..
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--------------- 85 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD--------------- 85 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 5567788888889999999999998887532 366778888888888899998888888876542
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHH-----------
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTI----------- 369 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l----------- 369 (651)
+.+..++..+...+...|++++|.+.++++... .|+ ...+..+
T Consensus 86 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 140 (327)
T 3cv0_A 86 -------------------PKDIAVHAALAVSHTNEHNANAALASLRAWLLS------QPQYEQLGSVNLQADVDIDDLN 140 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT------STTTTTC---------------
T ss_pred -------------------cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCccHHHHHHHhHHHHHHHHHH
Confidence 235566777778888888888888888887763 222 2222222
Q ss_pred ---HH-HHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 370 ---VK-VFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 370 ---~~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
.. .+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|..
T Consensus 141 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 218 (327)
T 3cv0_A 141 VQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLAN 218 (327)
T ss_dssp -----CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 22 3667777777877777777653 2256677777777777777777777777777654 3456667777777777
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
.|++++|...++++....
T Consensus 219 ~~~~~~A~~~~~~a~~~~-------------------------------------------------------------- 236 (327)
T 3cv0_A 219 GNRPQEALDAYNRALDIN-------------------------------------------------------------- 236 (327)
T ss_dssp TTCHHHHHHHHHHHHHHC--------------------------------------------------------------
T ss_pred cCCHHHHHHHHHHHHHcC--------------------------------------------------------------
Confidence 777777777776544221
Q ss_pred hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHH
Q 006303 526 CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSP-----------DVVAYTTAIKVCV 594 (651)
Q Consensus 526 ~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p-----------~~~~~~~li~~~~ 594 (651)
+.+...+..+...|...|++++|.+.++++.+..... +...|..+..++.
T Consensus 237 -------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 297 (327)
T 3cv0_A 237 -------------------PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLN 297 (327)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHH
Confidence 1245566777788888888888888888877632111 3667778888888
Q ss_pred hcCCHHHHHHHHHHH
Q 006303 595 RSKRLKQAFSLFEEM 609 (651)
Q Consensus 595 ~~g~~~~A~~~~~~m 609 (651)
+.|++++|..++++.
T Consensus 298 ~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 298 VMNRPDLVELTYAQN 312 (327)
T ss_dssp HTTCHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHH
Confidence 888888888877654
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.68 E-value=8.4e-15 Score=142.61 Aligned_cols=234 Identities=8% Similarity=-0.082 Sum_probs=179.0
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH-
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL- 297 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l- 297 (651)
.+..++..++..+...|++++|.+.|+++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+
T Consensus 53 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~ 130 (327)
T 3cv0_A 53 EREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ-YEQLGSVNL 130 (327)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TTTC-----
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHh
Confidence 3345566667777777777777777777776432 35667777777777788888888888777665322 11112111
Q ss_pred -------------H---HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc
Q 006303 298 -------------M---NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL 361 (651)
Q Consensus 298 -------------l---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 361 (651)
. ....|++++|...++++.+.. +.+...+..+...+...|++++|.+.++++.+. .+.
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~ 204 (327)
T 3cv0_A 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL-----RPD 204 (327)
T ss_dssp ---------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCC
Confidence 1 122367888999999988764 347888999999999999999999999999874 244
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----------
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP---------- 431 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~---------- 431 (651)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.|+++.+.....
T Consensus 205 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 283 (327)
T 3cv0_A 205 DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASRE 283 (327)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCT
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhh
Confidence 67889999999999999999999999998764 3368889999999999999999999999998864221
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 432 -NSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 432 -~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+...+..+..++.+.|++++|..++++...
T Consensus 284 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 284 ATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 467889999999999999999999876543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-14 Score=135.62 Aligned_cols=251 Identities=10% Similarity=-0.009 Sum_probs=152.4
Q ss_pred hccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHH
Q 006303 82 AKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNE 161 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (651)
.-.|.+.+|+..++..... .|+.. .+....+++.|...|+++.|+..++.. -.| ....+...
T Consensus 10 ~~~g~y~~ai~~~~~~~~~--~p~~~-----~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~-------~~~a~~~l 71 (291)
T 3mkr_A 10 FYIGSYQQCINEAQRVKPS--SPERD-----VERDVFLYRAYLAQRKYGVVLDEIKPS----SAP-------ELQAVRMF 71 (291)
T ss_dssp HHTTCHHHHHHHHHHSCCC--SHHHH-----HHHHHHHHHHHHHTTCHHHHHHHSCTT----SCH-------HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccC--Cchhh-----HHHHHHHHHHHHHCCCHHHHHHHhccc----CCh-------hHHHHHHH
Confidence 3478999999988876554 56531 233345678889999999988766431 112 11222222
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
...+...++.++|++.+++++..+..|++...+..++..+...|++++|.+.+++ |.+..++..++..|.+.|++++|.
T Consensus 72 a~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-~~~~~~~~~l~~~~~~~g~~~~A~ 150 (291)
T 3mkr_A 72 AEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-GDSLECMAMTVQILLKLDRLDLAR 150 (291)
T ss_dssp HHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-CCSHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 3355557889999999999887665566666666666777777777777776666 555566666666666666666666
Q ss_pred HHHHHHHhcCCCCcHHhH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHC
Q 006303 242 RAYDASKKHLSSPNMYIC---RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~ 318 (651)
+.|+++.+.. |+.... ...+..+...|++++|..+|+++.+.
T Consensus 151 ~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--------------------------------- 195 (291)
T 3mkr_A 151 KELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--------------------------------- 195 (291)
T ss_dssp HHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH---------------------------------
T ss_pred HHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh---------------------------------
Confidence 6666666532 332111 11222223335555555555554433
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH-HHHHHHHHHHC
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM-ALKVKEDMLSA 392 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~m~~~ 392 (651)
.+.+...++.+..++.+.|++++|...|+++... .+-+..++..++..+...|+.++ +.++++++.+.
T Consensus 196 -~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~-----~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 196 -CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK-----DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp -SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 1345666666777777777777777777776653 23345566666666666666654 45666666654
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.6e-14 Score=132.07 Aligned_cols=268 Identities=9% Similarity=0.044 Sum_probs=191.3
Q ss_pred cchHHHHHHHHHHHHhcCCCccc-cchHHHHHHHHhcCCChHHHHHHhhhCCC-CCccHHHHHHHHhhcCCHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKE-LDEEFRIVQLCVNKPDVNLAIRYACIVPR-ADILFCNFVREFGKKRDLVSALRAYD 245 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~ 245 (651)
.|++..|+..++++.... |.+ ......+.++|...|+++.|...++...+ ...++..+...+...++.++|++.++
T Consensus 12 ~g~y~~ai~~~~~~~~~~--p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~ 89 (291)
T 3mkr_A 12 IGSYQQCINEAQRVKPSS--PERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELD 89 (291)
T ss_dssp TTCHHHHHHHHHHSCCCS--HHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccCC--chhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHH
Confidence 699999999988764432 443 23556678899999999999987766422 22566678888899999999999999
Q ss_pred HHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCCCCC
Q 006303 246 ASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMA 322 (651)
Q Consensus 246 ~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~ 322 (651)
++...+..| +...+..+...+...|++++|++.+++ ..+...+..+...+ .|+.++|.+.|+++.+.. |
T Consensus 90 ~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p 161 (291)
T 3mkr_A 90 REMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD--E 161 (291)
T ss_dssp HHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred HHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--c
Confidence 988766545 566777778889999999999999886 23455555555543 378888888888887763 4
Q ss_pred CHHhH---HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHH
Q 006303 323 DMASY---NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTI 399 (651)
Q Consensus 323 ~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 399 (651)
+.... ..++..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++++... +-+..
T Consensus 162 ~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-----~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~ 235 (291)
T 3mkr_A 162 DATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-----CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPE 235 (291)
T ss_dssp TCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred CcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 43211 12334444558888888888888864 35677788888888888899999998888888764 33777
Q ss_pred HHHHHHHHHHhcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 400 TWSSLINACANAGLVEQ-AMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
++..++..+...|+.++ +.++++++.+.. +.++. +.+...+.+.++++..-|
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~----~~d~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPF----IKEYRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChH----HHHHHHHHHHHHHHHHHc
Confidence 88888888888888765 567888887764 22332 233444555555554433
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-13 Score=138.37 Aligned_cols=332 Identities=11% Similarity=-0.012 Sum_probs=164.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcC------CCC-cHHhHHHHHHHHHhc--CCHHHHHHHHHHHHhCCCcccHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHL------SSP-NMYICRTIIDVCGIC--GDYMKSRAIYEDLRSQNVTLNIY 292 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~-~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~g~~~~~~ 292 (651)
.+|+.+...|...|++++|...+++..+.. ..+ ...++..+..++... +++++|++.|++..+..+. +..
T Consensus 95 ~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~ 173 (472)
T 4g1t_A 95 VTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPE 173 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHH
Confidence 445566666666666666666666554310 001 233444444444333 3466666666666554221 122
Q ss_pred HHHHHHHh-----hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccH
Q 006303 293 VFNSLMNV-----NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDV 363 (651)
Q Consensus 293 ~~~~ll~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~ 363 (651)
.+..+..+ ..++.++|++.+++..+.. +.+...+..+...+.. .|++++|.+.+++.... .+.+.
T Consensus 174 ~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-----~~~~~ 247 (472)
T 4g1t_A 174 FTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-----APGVT 247 (472)
T ss_dssp HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-----CSSCH
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-----CccHH
Confidence 22222111 1145555666666655543 2234444444444333 34556666666666553 23445
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-------------------cCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN-------------------AGLVEQAMHLFEEM 424 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------------~g~~~~a~~~~~~~ 424 (651)
..+..+...|...|++++|...+++..+... -+..++..+..+|.. .+..+.|...+++.
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 5666666677777777777777766665432 244455555444432 12356677777777
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccc
Q 006303 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSS 504 (651)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 504 (651)
.+.. +.+...+..+..+|...|++++|.+.|++......
T Consensus 327 ~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~---------------------------------------- 365 (472)
T 4g1t_A 327 DEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL---------------------------------------- 365 (472)
T ss_dssp HHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC----------------------------------------
T ss_pred hhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC----------------------------------------
Confidence 6654 33444667777788888888888888887664321
Q ss_pred cccccccCCCH--HHHHH---HHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC
Q 006303 505 FDKRFSFKPTT--TTYNI---LMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGM 579 (651)
Q Consensus 505 ~~~~~~~~~~~--~~~~~---ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~ 579 (651)
.+.. ..+.. +.....++.++|...|.+..+. .|+...... ..+.+.+++++..+.+
T Consensus 366 -------~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~~---------~~~~l~~~~~~~l~~~- 426 (472)
T 4g1t_A 366 -------TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKEK---------MKDKLQKIAKMRLSKN- 426 (472)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHHH---------HHHHHHHHHHHHHHHC-
T ss_pred -------CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHHH---------HHHHHHHHHHHHHHhC-
Confidence 1111 11111 1111224677888888887773 444332221 1233445555555532
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHH
Q 006303 580 SPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQ-IQPNLVTY 621 (651)
Q Consensus 580 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~ 621 (651)
+.+..+|..+...|...|++++|++.|++.++.+ ..|+..+|
T Consensus 427 p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~ 469 (472)
T 4g1t_A 427 GADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSW 469 (472)
T ss_dssp C-CTTHHHHHHHHHHHHHHCC----------------------
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhc
Confidence 3356788888888888888888888888887543 33444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-15 Score=147.54 Aligned_cols=313 Identities=9% Similarity=0.054 Sum_probs=101.4
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
+.|+.++|.+++++.+.+ .+|..|+.++.+.|++++|++.|.+. +|..+|..++..+...|++++|+..++..
T Consensus 15 ~~~~ld~A~~fae~~~~~-~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~a 87 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP-AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 87 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh-HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 345566677776666433 46777777777777777777777442 45556666666666667777776655544
Q ss_pred HhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc
Q 006303 283 RSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD 362 (651)
Q Consensus 283 ~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 362 (651)
++. . +++.+.+.++.+|.+.|+++++.++++ .|+
T Consensus 88 rk~--~---------------------------------~~~~i~~~Li~~Y~Klg~l~e~e~f~~-----------~pn 121 (449)
T 1b89_A 88 RKK--A---------------------------------RESYVETELIFALAKTNRLAELEEFIN-----------GPN 121 (449)
T ss_dssp --------------------------------------------------------CHHHHTTTTT-----------CC-
T ss_pred HHh--C---------------------------------ccchhHHHHHHHHHHhCCHHHHHHHHc-----------CCc
Confidence 432 2 234444455555555555555444442 134
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
..+|+.+...|...|++++|..+|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+
T Consensus 122 ~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~a 186 (449)
T 1b89_A 122 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 186 (449)
T ss_dssp ---------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHH
Confidence 445555555555555555555555543 23555555555555555555555544 144555555555
Q ss_pred HHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH
Q 006303 443 CVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM 522 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll 522 (651)
|...|+++.|......+. +.|+. ...++
T Consensus 187 Cv~~~ef~lA~~~~l~L~--------------------------------------------------~~ad~--l~~lv 214 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIV--------------------------------------------------VHADE--LEELI 214 (449)
T ss_dssp HHHTTCHHHHHHTTTTTT--------------------------------------------------TCHHH--HHHHH
T ss_pred HHHcCcHHHHHHHHHHHH--------------------------------------------------hCHhh--HHHHH
Confidence 555555555532221110 01111 11233
Q ss_pred HHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC--CChHHHHHHHHHHHHCCCCC------CHHHHHHHHHH
Q 006303 523 KACC--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS--GNVEGALQILKIMREDGMSP------DVVAYTTAIKV 592 (651)
Q Consensus 523 ~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~~~~~~~~p------~~~~~~~li~~ 592 (651)
..|. +.++++..+++...... +-....|+-|..+|++- +++.+.++.|..- .+++| +...|..+.-.
T Consensus 215 ~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~--ini~k~~~~~~~~~~w~e~~~l 291 (449)
T 1b89_A 215 NYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSR--VNIPKVLRAAEQAHLWAELVFL 291 (449)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--SCHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHHHHHHH
Confidence 3332 23444444444444332 34667788887777765 3344444444321 23333 45568888888
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 593 CVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAV 643 (651)
Q Consensus 593 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 643 (651)
|.+.++++.|.. .|.+. .|+...-..+.....+..+.+---+++..
T Consensus 292 y~~~~e~d~A~~---tm~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~f 337 (449)
T 1b89_A 292 YDKYEEYDNAII---TMMNH--PTDAWKEGQFKDIITKVANVELYYRAIQF 337 (449)
T ss_dssp HHHTTCHHHHHH---HHHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHH
T ss_pred HHhhchHHHHHH---HHHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHH
Confidence 888899887765 55544 34433334444555566666554444333
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-13 Score=122.27 Aligned_cols=201 Identities=11% Similarity=-0.033 Sum_probs=149.9
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
+|++..++..+...+.+.|++++|+..|++..+..+ .+...+..+..++.+.|++++|+..|++..+.. |
T Consensus 1 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P------- 70 (217)
T 2pl2_A 1 MQTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--P------- 70 (217)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T-------
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--C-------
Confidence 356677888888899999999999999999887432 367788888899999999999999998887652 1
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHhhhcCCccccHHH
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA-----------GNTVLAQEIYGEVKHLEAKGVLKLDVFT 365 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 365 (651)
.+...+..+..++... |++++|+..|++..+. .+-+...
T Consensus 71 -------------------------~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~P~~~~~ 120 (217)
T 2pl2_A 71 -------------------------RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERV-----NPRYAPL 120 (217)
T ss_dssp -------------------------TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH-----CTTCHHH
T ss_pred -------------------------CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh-----CcccHHH
Confidence 2444555555555555 8999999999998874 2345678
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..+..+|...|++++|+..|++..+.. .+...+..+..++...|++++|...|++..+.. +.+...+..+..++.+
T Consensus 121 ~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~ 197 (217)
T 2pl2_A 121 HLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLL 197 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHH
Confidence 8889999999999999999999998876 588889999999999999999999999998875 4567788888889999
Q ss_pred cCChhHHHHHHHHhh
Q 006303 446 ACQFDRAFRLFRSWT 460 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~ 460 (651)
.|++++|+..|++..
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999999887654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.7e-12 Score=119.93 Aligned_cols=223 Identities=13% Similarity=0.029 Sum_probs=169.9
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc--cc----HHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVT--LN----IYVFN 295 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~--~~----~~~~~ 295 (651)
..+..+...+...|++++|+..|+++.+.. .+..++..+..++...|++++|+..++...+.... ++ ...+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 456667777888888888888888887765 66777888888888888888888888877664211 11 34444
Q ss_pred HHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHH
Q 006303 296 SLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVF 373 (651)
Q Consensus 296 ~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 373 (651)
.+...+ .|++++|...|++..... |+. ..+...|++++|.+.++.+... .+.+...+..+...+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV-----NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc-----CcchHHHHHHHHHHH
Confidence 444443 378888888888887743 442 3456678889999999988763 233456788888999
Q ss_pred HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 374 ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 374 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
...|++++|...++++.... +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|.
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 227 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASAL 227 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHH
Confidence 99999999999999988764 3367888899999999999999999999998875 456778888999999999999999
Q ss_pred HHHHHhhhc
Q 006303 454 RLFRSWTLS 462 (651)
Q Consensus 454 ~~~~~~~~~ 462 (651)
..+++....
T Consensus 228 ~~~~~a~~~ 236 (258)
T 3uq3_A 228 ETLDAARTK 236 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999887654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=5.3e-13 Score=130.94 Aligned_cols=247 Identities=10% Similarity=-0.036 Sum_probs=138.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcC-hhHHHHHHHHHHHcCCCcccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR-IDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~-~~~a~~~l~~~~~~~~~~~~~ 149 (651)
...+..+...+...|++++|+..|+++++. .|+. ..++..++..+...|+ +++|+..|+++++. .|+..
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~~------~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~~~ 166 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIEL--NAAN------YTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPKNY 166 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHh--CccC------HHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCCCH
Confidence 445555556666666666666666666655 4442 3333444444555564 66666666666552 23221
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
..+......+...|++++|+..|++++... |.+..+|..+..
T Consensus 167 ------~a~~~~g~~~~~~g~~~eAl~~~~kal~ld--------------------------------P~~~~a~~~lg~ 208 (382)
T 2h6f_A 167 ------QVWHHRRVLVEWLRDPSQELEFIADILNQD--------------------------------AKNYHAWQHRQW 208 (382)
T ss_dssp ------HHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--------------------------------TTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------------------------------ccCHHHHHHHHH
Confidence 112222222333455555555555555533 444456666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHhCCCcccHHHHHHHHHhhc-
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI-CGDYMKS-----RAIYEDLRSQNVTLNIYVFNSLMNVNA- 302 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~g~~~~~~~~~~ll~~~~- 302 (651)
++.+.|++++|+..|+++++... -+..+|+.+..++.. .|..++| ++.|++....... +...|+.+-.++.
T Consensus 209 ~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~ 286 (382)
T 2h6f_A 209 VIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD 286 (382)
T ss_dssp HHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT
T ss_pred HHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHc
Confidence 66667777777777777766432 245667777776666 4444555 3666666554322 3344444444333
Q ss_pred -C--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHhhhcCCccccHHHHHHH
Q 006303 303 -H--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAG---------NTVLAQEIYGEV-KHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 303 -~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~l 369 (651)
| ++++|++.+.++ +. .+.+...+..+..+|.+.| .+++|.++|+.+ .+. -+.....|..+
T Consensus 287 ~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~-----DP~r~~~w~~~ 359 (382)
T 2h6f_A 287 RGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEK-----DTIRKEYWRYI 359 (382)
T ss_dssp TCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTT-----CGGGHHHHHHH
T ss_pred cCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHh-----CchhHHHHHHH
Confidence 2 466677777666 22 2446778888888888864 258899999988 552 12234456655
Q ss_pred HHHHH
Q 006303 370 VKVFA 374 (651)
Q Consensus 370 ~~~~~ 374 (651)
...+.
T Consensus 360 ~~~l~ 364 (382)
T 2h6f_A 360 GRSLQ 364 (382)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.52 E-value=9e-12 Score=116.35 Aligned_cols=222 Identities=11% Similarity=0.073 Sum_probs=124.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC--CC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT--PN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~--~~---- 397 (651)
...+..+...+...|++++|...|+++.+. . .+...+..+..++...|++++|...++++.+.... ++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~-----~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~ 78 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWEL-----H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI 78 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence 445666666677777777777777766653 1 45566666666677777777777777666653211 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchh
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTD 477 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (651)
..++..+...+.+.|++++|...|+++.+. .|+. ..+.+.|++++|...++++....
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-------------- 135 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-------------- 135 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC--------------
Confidence 355666666666666666666666666653 5553 23444555666666666554321
Q ss_pred hhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 478 RISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
+.+...+..+...+. +++++|...++++.+.. +.+..++..+.
T Consensus 136 ----------------------------------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 180 (258)
T 3uq3_A 136 ----------------------------------PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRA 180 (258)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ----------------------------------cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHH
Confidence 112223333333332 35556666666555532 12445555555
Q ss_pred HHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 556 DACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 556 ~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..|...|++++|...+++..+.. +.+...|..+...+.+.|++++|.+.+++..
T Consensus 181 ~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 181 AALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAAR 234 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 66666666666666666655532 1235555555566666666666666665554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.52 E-value=2.4e-12 Score=116.54 Aligned_cols=208 Identities=12% Similarity=0.000 Sum_probs=135.3
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+++...+..+...+.+.|++++|...|++.++... .+...+..+..++.+.|++++|...|++..+.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 45666777788888888888888888888877643 367778888888888888888888888888764 4456667777
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHH
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYN 519 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (651)
..++.+.+.. ....
T Consensus 80 g~~~~~~~~~--------------------------------------------------------------~~~~---- 93 (217)
T 2pl2_A 80 SEAYVALYRQ--------------------------------------------------------------AEDR---- 93 (217)
T ss_dssp HHHHHHHHHT--------------------------------------------------------------CSSH----
T ss_pred HHHHHHhhhh--------------------------------------------------------------hhhh----
Confidence 7766665100 0000
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 520 ILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL 599 (651)
Q Consensus 520 ~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~ 599 (651)
..-.+++++|...+++..+.. +-+...+..+...|...|++++|...|++..+.. .+...+..+..+|...|++
T Consensus 94 ---~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~ 167 (217)
T 2pl2_A 94 ---ERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRL 167 (217)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCH
T ss_pred ---cccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCH
Confidence 000134455555555555532 1245677777888888888888888888888765 5777888888888888888
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 600 KQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 600 ~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
++|...|++..+.. +-+...+..+..++.+.|++++|.+.++
T Consensus 168 ~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~ 209 (217)
T 2pl2_A 168 DEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAA 209 (217)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC------------
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888887642 3356677777788888888888776544
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-11 Score=125.08 Aligned_cols=271 Identities=13% Similarity=0.036 Sum_probs=144.3
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCCh---HHHHHHhhhCC-CCCccHHHHHHHHhhcC----
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV---NLAIRYACIVP-RADILFCNFVREFGKKR---- 235 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~-~~~~~~~~l~~~~~~~g---- 235 (651)
.+.+.|++++|+..|++..+.+ +..++..++..+...|++ ++|..+|.+.- .++.++..|...+...+
T Consensus 12 ~~~~~g~~~~A~~~~~~aa~~g----~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~ 87 (452)
T 3e4b_A 12 EALKRGDTVTAQQNYQQLAELG----YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATE 87 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT----CCTGGGTCC----------------------------CHHHHHHHHHTC--CCH
T ss_pred HHHhCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCC
Confidence 3344799999999999998754 445566677777777777 78888877652 25566777777555544
Q ss_pred -CHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH---HHHHHHHHHHhCCCcccHHHHHHHHHhhcC----ChHH
Q 006303 236 -DLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM---KSRAIYEDLRSQNVTLNIYVFNSLMNVNAH----DLKF 307 (651)
Q Consensus 236 -~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~~~~ 307 (651)
++++|++.|++..+.|. ..++..|...|...+..+ ++.+.+......|. +.....-..+....+ +.+.
T Consensus 88 ~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~-~~a~~~Lg~~y~~~~~~~~~~~~ 163 (452)
T 3e4b_A 88 AEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY-PEAGLAQVLLYRTQGTYDQHLDD 163 (452)
T ss_dssp HHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC-TTHHHHHHHHHHHHTCGGGGHHH
T ss_pred cCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCcccCHHH
Confidence 77888888888887543 226666777776655433 33444444443333 222222222222223 2333
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc----cCHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAG---NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----KWWQ 380 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 380 (651)
+..++..... .++..+..|...|...| +.++|.+.|+..... | +++...+..+...|... ++++
T Consensus 164 a~~~~~~a~~----~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~---g--~~~a~~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 164 VERICKAALN----TTDICYVELATVYQKKQQPEQQAELLKQMEAGVSR---G--TVTAQRVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HHHHHHHHTT----TCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT---T--CSCHHHHHHHHHHHTCGGGSSCCHH
T ss_pred HHHHHHHHHc----CCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHC---C--CHHHHHHHHHHHHHhCCCCCCCCHH
Confidence 3333333322 23336666777777777 677777777766652 2 34444445555666544 5777
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----ChhHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINA-C--ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC-----QFDRA 452 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g-----~~~~a 452 (651)
+|+..|++.. .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 7777777766 32 44455555554 3 34667777777777777655 4555555666555 34 66667
Q ss_pred HHHHHHh
Q 006303 453 FRLFRSW 459 (651)
Q Consensus 453 ~~~~~~~ 459 (651)
.+.|++.
T Consensus 307 ~~~~~~A 313 (452)
T 3e4b_A 307 EAHFEKA 313 (452)
T ss_dssp HHHHHTT
T ss_pred HHHHHHH
Confidence 6666654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.49 E-value=6e-13 Score=125.83 Aligned_cols=243 Identities=12% Similarity=-0.024 Sum_probs=135.3
Q ss_pred cchHHHHHHHHHHHHhcCC--CccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
.|++++|+..++++..... .|.....+..++..+...|++++|...+..+ |.+..++..++..|...|++++|+
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 6999999999999987532 2334455555666666666666666655542 444555666666666666666666
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCC
Q 006303 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVM 321 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~ 321 (651)
+.|+++.+... .+..++..+..+|...|++++|...|+++.+..
T Consensus 98 ~~~~~al~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~----------------------------------- 141 (275)
T 1xnf_A 98 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD----------------------------------- 141 (275)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------------------------
T ss_pred HHHHHHHhcCc-cccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-----------------------------------
Confidence 66666655321 234556666666666666666666666655432
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC---CCH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT---PNT 398 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~---~~~ 398 (651)
|+.......+..+...|++++|...++..... .+++...+ .++..+...++.++|...++........ .+.
T Consensus 142 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 215 (275)
T 1xnf_A 142 PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK-----SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLS 215 (275)
T ss_dssp TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH-----SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccccccc
Confidence 22222223333334556666666666555542 12222222 3555556666666666666665543211 013
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
..+..+...+.+.|++++|...|+++.+.. |+. +.....++...|++++|++.+
T Consensus 216 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 216 ETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 556666777777777777777777776553 321 122233455556666665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.8e-12 Score=118.55 Aligned_cols=202 Identities=13% Similarity=-0.006 Sum_probs=144.6
Q ss_pred CccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 67 LSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
|......+..++..+...|++++|+..|++++.. .|. ...++..++..+...|++++|+..++++.+.. |
T Consensus 33 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~ 102 (252)
T 2ho1_A 33 RDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI--DPS------SADAHAALAVVFQTEMEPKLADEEYRKALASD--S 102 (252)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T
T ss_pred hHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCC------hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--c
Confidence 4434778899999999999999999999999988 554 24455667888999999999999999999853 3
Q ss_pred cccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCc
Q 006303 147 LELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADI 222 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~ 222 (651)
+. ...+...+..+...|++++|+..++++...+..|.....+..++..+...|++++|...+... |.+..
T Consensus 103 ~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 176 (252)
T 2ho1_A 103 RN------ARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS 176 (252)
T ss_dssp TC------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH
T ss_pred Cc------HHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHH
Confidence 22 122333334556689999999999999873334555666666777777777777777766553 44556
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
++..++..|...|++++|...++.+.+... .+...+..+...+...|++++|.+.++.+.+.
T Consensus 177 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 177 VALEMADLLYKEREYVPARQYYDLFAQGGG-QNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 666677777777777777777777665322 34556666666777777777777777776654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.48 E-value=1.2e-11 Score=116.49 Aligned_cols=245 Identities=9% Similarity=0.013 Sum_probs=185.7
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTIT 400 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~ 400 (651)
|...+......+...|++++|...|+++.+. .+.+...+..+..+|...|++++|+..++++.+.+..+ ....
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 76 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAK-----KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSAD 76 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHT-----TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHH
Confidence 3445666778888999999999999998873 23345588888999999999999999999998743222 2345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
|..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...|++.....
T Consensus 77 ~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----------------- 138 (272)
T 3u4t_A 77 FEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT----------------- 138 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-----------------
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-----------------
Confidence 8889999999999999999999998875 4466788899999999999999999998876431
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHH-HHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILM-KACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll-~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 558 (651)
+.+...|..+. ..+. .++++|...++++.+.. +.+...+..+...+
T Consensus 139 -------------------------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~ 186 (272)
T 3u4t_A 139 -------------------------------TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARAN 186 (272)
T ss_dssp -------------------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred -------------------------------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 33455566555 4444 48999999999998853 22467777788888
Q ss_pred hcCCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHH
Q 006303 559 GGSGN---VEGALQILKIMREDG-MSPD------VVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNL-VTYITL 624 (651)
Q Consensus 559 ~~~g~---~~~A~~~~~~~~~~~-~~p~------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l 624 (651)
...|+ +++|...++++.+.. -.|+ ...|..+...|...|++++|.+.|++..+. .|+. ..+..+
T Consensus 187 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l 261 (272)
T 3u4t_A 187 AAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL--DPTNKKAIDGL 261 (272)
T ss_dssp HHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred HHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CccHHHHHHHh
Confidence 88888 888999998887631 1233 257788899999999999999999999865 3544 333333
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=8.5e-11 Score=110.80 Aligned_cols=222 Identities=12% Similarity=0.021 Sum_probs=170.2
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
..++..+...|...|++++|++.|++..+. .+..++..+...|.. .+++++|+..|++..+.+ +...+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 355666777777778888888888777762 345667777777777 788888888888777765 3333333
Q ss_pred HHH--hh----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 297 LMN--VN----AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 297 ll~--~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
+-. .. .+++++|+..|++..+.+ +...+..+...|.. .+++++|.+.|++..+. .+...+
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~ 149 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-------NDGDGC 149 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-------TCHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-------CcHHHH
Confidence 332 23 567888888888877764 67788888888888 89999999999988862 256677
Q ss_pred HHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 367 STIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 367 ~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..+...|.. .+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 150 ~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 223 (273)
T 1ouv_A 150 TILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFN 223 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHH
Confidence 788888887 899999999999988864 56778888888888 899999999999988875 3667778
Q ss_pred HHHHHHh----cCChhHHHHHHHHhhhccc
Q 006303 439 LLQACVE----ACQFDRAFRLFRSWTLSKT 464 (651)
Q Consensus 439 ll~~~~~----~g~~~~a~~~~~~~~~~~~ 464 (651)
+..+|.+ .+++++|.+.|++..+.+.
T Consensus 224 l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 224 LGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp HHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8888888 8999999999998876653
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=115.00 Aligned_cols=225 Identities=14% Similarity=0.031 Sum_probs=148.6
Q ss_pred HHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC---CCCCcc----HHHHHHHHh
Q 006303 160 NECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV---PRADIL----FCNFVREFG 232 (651)
Q Consensus 160 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~---~~~~~~----~~~l~~~~~ 232 (651)
..+..+...|++++|+..++++++.. |.+...+..++..+...|++++|...+..+ +.+... +..+...|.
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445566899999999999998855 677777888888888888888888877664 333333 677888888
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH-Hhh-cCChHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM-NVN-AHDLKFTLE 310 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll-~~~-~~~~~~a~~ 310 (651)
..|++++|++.|++..+... .+..++..+...|...|++++|+..|++..+.... +...|..+- ..+ .++++.|..
T Consensus 86 ~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRDT-TRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888887432 35667888888888888888888888887766221 333333333 322 246677777
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhcCCcccc------HHHHHHHHHHHHcccCHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLD------VFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~ 381 (651)
.|++..+.. +.+...+..+..++...|+ +++|...|+++.+..... |+ ...|..+...|...|++++
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPG---GAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGG---GGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcc---cccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 777666543 2235555556666666666 666666666665532111 22 1345555556666666666
Q ss_pred HHHHHHHHHHC
Q 006303 382 ALKVKEDMLSA 392 (651)
Q Consensus 382 a~~~~~~m~~~ 392 (651)
|...|+++.+.
T Consensus 240 A~~~~~~al~~ 250 (272)
T 3u4t_A 240 ADAAWKNILAL 250 (272)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhc
Confidence 66666666554
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-12 Score=121.73 Aligned_cols=220 Identities=9% Similarity=-0.082 Sum_probs=147.4
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+...|++++|+..++++.+.....++ .....+......+...|++++|+..|++++... |.+...+..++..+.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDD----ERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCc----hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHH
Confidence 45679999999999999985321111 123334444456667899999999999999865 778888999999999
Q ss_pred cCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 203 NKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAI 278 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 278 (651)
..|++++|...+..+ |.+..++..++..|.+.|++++|++.|+++.+. .|+.......+..+...|++++|...
T Consensus 89 ~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~ 166 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEV 166 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHH
Confidence 999999999998774 677889999999999999999999999999984 35444444455555677899999999
Q ss_pred HHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 279 YEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVM---ADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 279 ~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+......... +...+. +...+. ++.+.|...+......... .+...+..+...+...|++++|...|+++..
T Consensus 167 ~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 243 (275)
T 1xnf_A 167 LKQHFEKSDK-EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVA 243 (275)
T ss_dssp HHHHHHHSCC-CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHhcCCc-chHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8777654321 222222 111111 3444455555544332100 0123444455555555555555555555543
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.4e-11 Score=111.97 Aligned_cols=208 Identities=14% Similarity=0.028 Sum_probs=144.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|.+.|+++... .+.+...+..+...|...|++++|...++++.+.. +.+...+..
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 110 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI-----DPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNN 110 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhc-----CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHH
Confidence 455666777777778888888887777663 23456667777777777777777777777777653 225666777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
+...+...|++++|.++++++.+.+..| +...+..+..+|.+.|++++|.+.+++....
T Consensus 111 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-------------------- 170 (252)
T 2ho1_A 111 YGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL-------------------- 170 (252)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------------------
Confidence 7777777777777777777776622233 3445666666777777777777776654422
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 562 (651)
. +.+...+..+...|...|
T Consensus 171 ------------------------------------------------------------~-~~~~~~~~~la~~~~~~g 189 (252)
T 2ho1_A 171 ------------------------------------------------------------N-RNQPSVALEMADLLYKER 189 (252)
T ss_dssp ------------------------------------------------------------C-SCCHHHHHHHHHHHHHTT
T ss_pred ------------------------------------------------------------C-cccHHHHHHHHHHHHHcC
Confidence 1 124566777888888888
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTY 621 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 621 (651)
++++|..+++++.+.. ..+...+..+...+...|++++|.++++++.+. .|+...+
T Consensus 190 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~ 245 (252)
T 2ho1_A 190 EYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEY 245 (252)
T ss_dssp CHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHH
T ss_pred CHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHH
Confidence 8888888888887753 346677778888888888999998888888764 3554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=5e-11 Score=112.37 Aligned_cols=219 Identities=16% Similarity=0.056 Sum_probs=164.8
Q ss_pred cchHHHHHHHHhcCCChHHHHHHhhhC--CCCCccHHHHHHHHhh----cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 191 LDEEFRIVQLCVNKPDVNLAIRYACIV--PRADILFCNFVREFGK----KRDLVSALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 191 ~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
...+..++..+...|++++|...|.+. +.+..++..+...|.. .+++++|++.|++..+.+ +..++..+..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~ 82 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 334445555555555555555555443 3344666777777777 888888888888887754 5677778888
Q ss_pred HHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh--h----cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 265 VCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--N----AHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 265 ~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
.|.. .+++++|+..|++..+.+ +...+..+-.. . .+++++|+..|++..+.+ +...+..+...|
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 156 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLY 156 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHH
Confidence 8888 888888888888887765 33334333332 3 568888888888888765 567777888888
Q ss_pred Hh----cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 335 CL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 335 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
.. .+++++|...|++..+. .+...+..+...|.. .+++++|+..|++..+.+ +...+..+..
T Consensus 157 ~~~~~~~~~~~~A~~~~~~a~~~-------~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 157 DAGRGTPKDLKKALASYDKACDL-------KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HcCCCCCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 88 89999999999998862 356778888889988 999999999999999875 3677888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006303 407 ACAN----AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 407 ~~~~----~g~~~~a~~~~~~~~~~~ 428 (651)
.|.+ .+++++|.+.|++..+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 8988 899999999999998875
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-11 Score=108.41 Aligned_cols=211 Identities=9% Similarity=-0.054 Sum_probs=140.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|.+.|+.+.+. .+.+...+..+...|...|++++|...++++.... +.+..++.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~ 80 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS-----DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINN 80 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHH
Confidence 4556667777777777777777777777663 23346667777777777777777777777776653 23566677
Q ss_pred HHHHHHHhc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhh
Q 006303 403 SLINACANA-GLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRIS 480 (651)
Q Consensus 403 ~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (651)
.+...+... |++++|...++++.+.+..|+ ...+..+..++.+.|++++|...++++....
T Consensus 81 ~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----------------- 143 (225)
T 2vq2_A 81 NYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ----------------- 143 (225)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-----------------
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 777777777 777777777777776222232 4556666667777777777777766544321
Q ss_pred hhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhc
Q 006303 481 NMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGG 560 (651)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~ 560 (651)
+.+...+..+...|..
T Consensus 144 ----------------------------------------------------------------~~~~~~~~~la~~~~~ 159 (225)
T 2vq2_A 144 ----------------------------------------------------------------PQFPPAFKELARTKML 159 (225)
T ss_dssp ----------------------------------------------------------------TTCHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCCchHHHHHHHHHHH
Confidence 1235566677777777
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 561 SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYI 622 (651)
Q Consensus 561 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 622 (651)
.|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+. .|+.....
T Consensus 160 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~ 219 (225)
T 2vq2_A 160 AGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQ 219 (225)
T ss_dssp HTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHH
Confidence 8888888888888776432135666777777777888888888888877643 35544433
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-12 Score=127.75 Aligned_cols=319 Identities=14% Similarity=0.010 Sum_probs=215.0
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|.... ....++..++..+...|++++|+..+++..+..... ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~ 82 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GD 82 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT--TC
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhc--CcccHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc--cc
Confidence 556677888899999999999999999988 333211 123556778888999999999999999987641000 00
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
.......+......+...|++++|+..+++.+.......+ .. ....++..+...
T Consensus 83 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~~ 136 (406)
T 3sf4_A 83 QLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGNV 136 (406)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----------------HH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc----------------cc----------chHHHHHHHHHH
Confidence 1112333444445566688999999888887653210000 00 001456677788
Q ss_pred HhhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 231 FGKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 231 ~~~~g~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|...|+ +++|++.+++..+. +..+ ...++..+...|...|++++|+..+++..+.
T Consensus 137 ~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 216 (406)
T 3sf4_A 137 YHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 216 (406)
T ss_dssp HHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHH
T ss_pred HHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 888888 88888888766542 1112 2456788888888999999999888876542
Q ss_pred CCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cH
Q 006303 286 NVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DV 363 (651)
Q Consensus 286 g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~ 363 (651)
... .+. .....++..+...+...|++++|...+++...........+ ..
T Consensus 217 --------------------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 267 (406)
T 3sf4_A 217 --------------------------AKE---FGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 267 (406)
T ss_dssp --------------------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred --------------------------HHh---cCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHH
Confidence 110 000 01134677888899999999999999998876543221111 15
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNS 433 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~ 433 (651)
.++..+...|...|++++|...+++....... .+ ..++..+...|...|++++|...+++..+. +.. ...
T Consensus 268 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 347 (406)
T 3sf4_A 268 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGEL 347 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchh
Confidence 57888899999999999999999888753111 12 457888889999999999999999987653 111 123
Q ss_pred HHHHHHHHHHHhcCChh
Q 006303 434 QCCNILLQACVEACQFD 450 (651)
Q Consensus 434 ~~~~~ll~~~~~~g~~~ 450 (651)
.++..+...+...|+..
T Consensus 348 ~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 348 TARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhhHhH
Confidence 45666777777777664
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.1e-11 Score=109.97 Aligned_cols=198 Identities=8% Similarity=-0.092 Sum_probs=108.4
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH--h
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN--V 300 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~--~ 300 (651)
++..++..+...|++++|++.|+++.+... .+..++..+...+...|++++|.+.++++.+.... +...+..+.. .
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHHHHH
Confidence 344445555555555555555555544321 23444555555555555555555555555443211 1122222211 1
Q ss_pred hc-CChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 301 NA-HDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~~-~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
.. |++++|...++++.+.+..| +...+..+...+...|++++|.+.|+++.+. .+.+...+..+...+...|+
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~ 162 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA-----QPQFPPAFKELARTKMLAGQ 162 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHTC
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 22 33444444444443311122 2456666777777777777777777777653 13345667777777777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+++|..+++++.+.....+...+..+...+...|+.+.+..+++.+.+.
T Consensus 163 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 163 LGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 7777777777766532135566666666667777777777777777654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.45 E-value=1.7e-11 Score=120.16 Aligned_cols=215 Identities=10% Similarity=0.029 Sum_probs=133.3
Q ss_pred CCCccHHHHHHHHhhcCC-HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 219 RADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
.+..+|+.+...+...|+ +++|+..|+++++... .+..+|+.+..++...|++++|+..|+++.+.... +...|..+
T Consensus 129 ~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P-~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~l 206 (382)
T 2h6f_A 129 ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP-KNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHR 206 (382)
T ss_dssp TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHH
Confidence 334455555555555564 6666666666655321 24555666666666666666666666665554322 23333333
Q ss_pred HHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHH-----HHHHHHHHHhhhcCCccccHHHHHHH
Q 006303 298 MNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL-AGNTVLA-----QEIYGEVKHLEAKGVLKLDVFTYSTI 369 (651)
Q Consensus 298 l~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~g~~~~a-----~~~~~~~~~~~~~~~~~~~~~~~~~l 369 (651)
-.++ .|++++|+..|+++++.. +-+...|+.+..++.. .|..++| ++.|++...+ .+-+...|+.+
T Consensus 207 g~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l-----~P~~~~a~~~l 280 (382)
T 2h6f_A 207 QWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL-----VPHNESAWNYL 280 (382)
T ss_dssp HHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH-----STTCHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH-----CCCCHHHHHHH
Confidence 3322 255566666666665543 2367788888888888 5655777 4778887774 24456788888
Q ss_pred HHHHHccc--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------CHHHHHHHHHHH-HHcCCCCCHHHHH
Q 006303 370 VKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINACANAG---------LVEQAMHLFEEM-LQAGCEPNSQCCN 437 (651)
Q Consensus 370 ~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g---------~~~~a~~~~~~~-~~~~~~~~~~~~~ 437 (651)
...+...| ++++|+..+.++ +. .+.+...+..+..+|.+.| ..++|.++|+++ .+.+ +.....|.
T Consensus 281 ~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~ 357 (382)
T 2h6f_A 281 KGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWR 357 (382)
T ss_dssp HHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHH
T ss_pred HHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHH
Confidence 88888877 688999988887 33 2446778888888888864 258899999998 5543 23344555
Q ss_pred HHHHHHH
Q 006303 438 ILLQACV 444 (651)
Q Consensus 438 ~ll~~~~ 444 (651)
.+...+.
T Consensus 358 ~~~~~l~ 364 (382)
T 2h6f_A 358 YIGRSLQ 364 (382)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.44 E-value=4.7e-11 Score=121.03 Aligned_cols=307 Identities=10% Similarity=-0.015 Sum_probs=197.2
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchH---HHHHHHHHHHHhcCCCccccchH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEV---EMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
.++..+.+.|++++|+.+|++..+.|..+ .. ..+-.++ ...|+. ++|+..|++.... +...+
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~-A~--~~Lg~~y-------~~~g~~~d~~~A~~~~~~A~~~-----~~~A~ 72 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSE-AQ--VGLADIQ-------VGTRDPAQIKQAEATYRAAADT-----SPRAQ 72 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCT-GG--GTCC----------------------------------------CH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHH-HH--HHHHHHH-------HccCCCCCHHHHHHHHHHHHhC-----CHHHH
Confidence 34566789999999999999998876322 11 1111122 224666 9999999998753 45567
Q ss_pred HHHHHHHhcCC-----ChHHHHHHhhhC--CCCCccHHHHHHHHhhcCCHHH---HHHHHHHHHhcCCCCcHHhHHHHHH
Q 006303 195 FRIVQLCVNKP-----DVNLAIRYACIV--PRADILFCNFVREFGKKRDLVS---ALRAYDASKKHLSSPNMYICRTIID 264 (651)
Q Consensus 195 ~~l~~~~~~~~-----~~~~A~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~l~~ 264 (651)
..++..+...+ ++++|..++.+. +.+..++..|...|...++.+. +.+.+......| +...+..|..
T Consensus 73 ~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~ 149 (452)
T 3e4b_A 73 ARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVL 149 (452)
T ss_dssp HHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHH
Confidence 77888555555 778999998875 5566789999999988765444 455555555433 3557777888
Q ss_pred HHHhcCCHHHHHHH----HHHHHhCCCcccHHHHHHHHHhhcC---ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006303 265 VCGICGDYMKSRAI----YEDLRSQNVTLNIYVFNSLMNVNAH---DLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (651)
Q Consensus 265 ~~~~~g~~~~a~~~----~~~~~~~g~~~~~~~~~~ll~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (651)
.|...+.++++.+. +...... .|+....-..+....| +.++|++.|++..+.| +++...+..|...|...
T Consensus 150 ~y~~~~~~~~~~~~a~~~~~~a~~~--~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g 226 (452)
T 3e4b_A 150 LYRTQGTYDQHLDDVERICKAALNT--TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDA 226 (452)
T ss_dssp HHHHHTCGGGGHHHHHHHHHHHTTT--CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCG
T ss_pred HHHcCCCcccCHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCC
Confidence 88888865544444 4433322 3343222222333346 8899999999999987 45666666777777655
Q ss_pred ----CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH-H--HcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 338 ----GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-F--ADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 338 ----g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
+++++|.+.|+... +-+...+..+... | ...+++++|+..|++..+.| +...+..|...|.
T Consensus 227 ~~~~~d~~~A~~~~~~aa--------~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~- 294 (452)
T 3e4b_A 227 TLGTPDEKTAQALLEKIA--------PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY- 294 (452)
T ss_dssp GGSSCCHHHHHHHHHHHG--------GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-
T ss_pred CCCCCCHHHHHHHHHHHc--------CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-
Confidence 79999999999875 1355666777666 4 56899999999999999876 6778888888887
Q ss_pred cC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhh
Q 006303 411 AG-----LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTL 461 (651)
Q Consensus 411 ~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~ 461 (651)
.| ++++|...|++.. . -++..+..|...|.. ..++++|...|++..+
T Consensus 295 ~G~g~~~d~~~A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 295 EGKWVPADAKAAEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp HCSSSCCCHHHHHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred cCCCCCCCHHHHHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 55 9999999999987 3 356667777776665 2377777777776554
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=2.7e-11 Score=111.95 Aligned_cols=200 Identities=9% Similarity=0.024 Sum_probs=137.8
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
...+..+...+...|++++|+..|+++.+... .+..++..+...+...|++++|+..|+++.+..
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 87 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-------------- 87 (243)
T ss_dssp -------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--------------
Confidence 36677788888889999999999999887432 357788888888889999999999888876542
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+..+...+...|++++|.+.++++.+. .+.+...+..+...+...|+++
T Consensus 88 --------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 88 --------------------SSAATAYYGAGNVYVVKEMYKEAKDMFEKALRA-----GMENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----TCCSHHHHHHHHHHHHHTSCHH
T ss_pred --------------------CcchHHHHHHHHHHHHhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhccHH
Confidence 225566777777788888888888888887764 2345667777888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+|...++++.+.. +.+...+..+...+.+.|++++|...|+++.+.. +.+..++..+..+|.+.|++++|.+.++++.
T Consensus 143 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 8888888877653 2366777778888888888888888888887764 4456677788888888888888888888776
Q ss_pred hc
Q 006303 461 LS 462 (651)
Q Consensus 461 ~~ 462 (651)
..
T Consensus 221 ~~ 222 (243)
T 2q7f_A 221 DI 222 (243)
T ss_dssp HH
T ss_pred cc
Confidence 54
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=1.5e-11 Score=113.68 Aligned_cols=201 Identities=14% Similarity=0.109 Sum_probs=123.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
....|..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 95 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE-----NKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYY 95 (243)
T ss_dssp --------------------CCTTHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHH
Confidence 4556666777777777888888877777652 23456677777777777888888888877777653 23566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|...++++....
T Consensus 96 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~------------------- 155 (243)
T 2q7f_A 96 GAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN------------------- 155 (243)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-------------------
Confidence 77777777788888888777777664 3456667777777777777777777776654321
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSG 562 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g 562 (651)
+.+...+..+...|...|
T Consensus 156 --------------------------------------------------------------~~~~~~~~~l~~~~~~~~ 173 (243)
T 2q7f_A 156 --------------------------------------------------------------ENDTEARFQFGMCLANEG 173 (243)
T ss_dssp --------------------------------------------------------------TTCHHHHHHHHHHHHHHT
T ss_pred --------------------------------------------------------------CccHHHHHHHHHHHHHcC
Confidence 123445666667777777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
++++|...++++.+.. ..+..++..+...|...|++++|.+.++++.+.
T Consensus 174 ~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 222 (243)
T 2q7f_A 174 MLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI 222 (243)
T ss_dssp CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence 7777777777776642 234666777777777777777777777777653
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.41 E-value=1.3e-11 Score=124.29 Aligned_cols=295 Identities=14% Similarity=0.036 Sum_probs=192.6
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC--CCccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG--VAPLE 148 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~--~~~~~ 148 (651)
...+..++..+...|++++|+..|+++++. .|+... ....++..++..+...|++++|+..+++..+.. ...
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-- 121 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND-- 121 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC--
Confidence 455667888889999999999999999998 443211 123456778888999999999999999987741 111
Q ss_pred cccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHH
Q 006303 149 LFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFV 228 (651)
Q Consensus 149 ~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~ 228 (651)
.......+......+...|++++|+..+++.+...... ++. +....++..+.
T Consensus 122 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~----------------~~~----------~~~~~~~~~l~ 173 (411)
T 4a1s_A 122 --RLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQL----------------GDR----------LSEGRALYNLG 173 (411)
T ss_dssp --HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH----------------TCH----------HHHHHHHHHHH
T ss_pred --chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHh----------------hch----------HHHHHHHHHHH
Confidence 11233344444556666899999999888876531000 000 00124566777
Q ss_pred HHHhhcCC-----------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 229 REFGKKRD-----------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 229 ~~~~~~g~-----------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
..|...|+ +++|++.+++..+. +..+ ...++..+...|...|++++|+..+++..+.
T Consensus 174 ~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 252 (411)
T 4a1s_A 174 NVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRI- 252 (411)
T ss_dssp HHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-
Confidence 88888888 88888877766542 1111 2347777888888888888888888776542
Q ss_pred CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHH
Q 006303 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFT 365 (651)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~ 365 (651)
..... .......++..+...|...|++++|.+.|++......... ......+
T Consensus 253 -------------------------~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 305 (411)
T 4a1s_A 253 -------------------------AREFG--DRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQS 305 (411)
T ss_dssp -------------------------HHHHT--CHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHhcC--CcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 11100 0001134677788888899999999999988876432210 1112456
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+..+...|...|++++|...+++...... .....++..+...|.+.|++++|...|++..+.
T Consensus 306 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 306 CYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 77778888888888888888887764310 011335666777777777777777777777654
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-11 Score=122.08 Aligned_cols=308 Identities=14% Similarity=0.001 Sum_probs=201.3
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
..+..+...+...|++++|+..|+++.+...... ..++..+...+...|++++|...+++....
T Consensus 10 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------------- 76 (406)
T 3sf4_A 10 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL------------- 76 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------
Confidence 3455677888889999999999998888533211 356888888888999999999988876532
Q ss_pred HhhcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHcc
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~ 376 (651)
... .+.. ....++..+...+...|++++|...+++......... ......++..+...|...
T Consensus 77 -------------~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~ 140 (406)
T 3sf4_A 77 -------------ART---IGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAK 140 (406)
T ss_dssp -------------HHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHh---ccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHc
Confidence 110 0111 1245677788888899999999999988876432210 111144778888888899
Q ss_pred cC--------------------HHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C
Q 006303 377 KW--------------------WQMALKVKEDMLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-E 430 (651)
Q Consensus 377 ~~--------------------~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~ 430 (651)
|+ +++|...+++.... +.. ....++..+...+...|++++|...+++..+... .
T Consensus 141 g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 220 (406)
T 3sf4_A 141 GKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220 (406)
T ss_dssp HHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHT
T ss_pred CCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 99 88888888876542 111 1234677788888889999999998888765311 1
Q ss_pred CC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccc
Q 006303 431 PN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFD 506 (651)
Q Consensus 431 ~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 506 (651)
++ ...+..+..+|...|++++|...+++......
T Consensus 221 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------------------------------ 258 (406)
T 3sf4_A 221 GDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR------------------------------------------ 258 (406)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH------------------------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH------------------------------------------
Confidence 12 23677778888888999988888876543211
Q ss_pred cccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCC-CCC--
Q 006303 507 KRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSP-NHISWTILIDACGGSGNVEGALQILKIMREDGM-SPD-- 582 (651)
Q Consensus 507 ~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~p~-- 582 (651)
..+..+ ...++..+...|...|++++|...+++..+... ..+
T Consensus 259 ----------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~ 304 (406)
T 3sf4_A 259 ----------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI 304 (406)
T ss_dssp ----------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred ----------------------------------hCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence 000001 134566677777778888888887777665210 111
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCH
Q 006303 583 --VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY----QIQP-NLVTYITLLRARSRYGSL 634 (651)
Q Consensus 583 --~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~l~~~~~~~g~~ 634 (651)
..++..+...|...|++++|.+.+++..+. +..+ ...++..+...+...|+.
T Consensus 305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 446667777777888888888887776531 2111 134555556666665554
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.8e-11 Score=121.80 Aligned_cols=284 Identities=13% Similarity=0.008 Sum_probs=197.1
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
.+..+...+...|++++|+..|+++.+.... +. .++..+...|...|++++|+..|++..+.
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------------- 115 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL------------- 115 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------
Confidence 3456778889999999999999999886432 22 47888889999999999999999876542
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHccc
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAK 377 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 377 (651)
..... ..+....++..+...|...|++++|...|+++........ .+....++..+...|...|
T Consensus 116 -------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 180 (411)
T 4a1s_A 116 -------------AKSMN--DRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKG 180 (411)
T ss_dssp -------------HHHTT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------HHHcc--CchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcC
Confidence 11110 0012345677888889999999999999998876432211 1223457788888999999
Q ss_pred C-----------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC--
Q 006303 378 W-----------------WQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PN-- 432 (651)
Q Consensus 378 ~-----------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~-- 432 (651)
+ +++|+..+++..+. +. .....++..+...+...|++++|...+++..+.... .+
T Consensus 181 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 260 (411)
T 4a1s_A 181 KHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRA 260 (411)
T ss_dssp HHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred cccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcH
Confidence 9 89998888876542 11 112346777888888999999999998887654210 11
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 433 --SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 433 --~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
...+..+..+|...|++++|...+++......
T Consensus 261 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~---------------------------------------------- 294 (411)
T 4a1s_A 261 AERRANSNLGNSHIFLGQFEDAAEHYKRTLALAV---------------------------------------------- 294 (411)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH----------------------------------------------
Confidence 22677778888888888888888876543211
Q ss_pred cCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CC-CCCHH
Q 006303 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL-SPNHISWTILIDACGGSGNVEGALQILKIMRED----GM-SPDVV 584 (651)
Q Consensus 511 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~-~p~~~ 584 (651)
..+. .....++..+...|...|++++|..++++..+. +. .....
T Consensus 295 ------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 344 (411)
T 4a1s_A 295 ------------------------------ELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEAR 344 (411)
T ss_dssp ------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred ------------------------------HcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHH
Confidence 0000 012456677778888888888888888887652 10 01134
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 585 AYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 585 ~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
++..+...|...|++++|.+++++..+
T Consensus 345 ~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 345 ACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 667778888888888888888888764
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-11 Score=119.60 Aligned_cols=296 Identities=14% Similarity=0.022 Sum_probs=185.8
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
..+...+..+...|++++|+..|+++++. .|.... ....++..++..+...|++++|+..+++..+..... ...
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~--~~~ 79 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTI--GDQ 79 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH--TCH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc--ccc
Confidence 34556677888899999999999999988 343211 124556778888999999999999999887641000 001
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
......+......+...|++++|+..+++.........+ .. ....++..+...|
T Consensus 80 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----------------~~----------~~~~~~~~l~~~~ 133 (338)
T 3ro2_A 80 LGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELND----------------KV----------GEARALYNLGNVY 133 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----------------HH----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcC----------------ch----------HHHHHHHHHHHHH
Confidence 112233444444566678888888888876542211000 00 0013566677778
Q ss_pred hhcCC--------------------HHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 232 GKKRD--------------------LVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 232 ~~~g~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
...|+ +++|++.+++..+. +..+ ...++..+...+...|++++|...+++..+.
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~- 212 (338)
T 3ro2_A 134 HAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI- 212 (338)
T ss_dssp HHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-
T ss_pred HHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-
Confidence 88888 78888777765432 1111 2446777778888888888888888776532
Q ss_pred CcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHH
Q 006303 287 VTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFT 365 (651)
Q Consensus 287 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~ 365 (651)
..... .......++..+...+...|++++|.+.+++...........+ ...+
T Consensus 213 -------------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 265 (338)
T 3ro2_A 213 -------------------------AKEFG--DKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 265 (338)
T ss_dssp -------------------------HHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -------------------------HHhcC--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHH
Confidence 11100 0001234677788888888999999999888876432211111 1446
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGV-----TPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+..+...|...|++++|...+++...... .....++..+...+.+.|++++|...+++..+.
T Consensus 266 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 266 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 67777788888888888888877754310 011335666677777777777777777776653
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.1e-11 Score=118.54 Aligned_cols=302 Identities=10% Similarity=0.069 Sum_probs=185.6
Q ss_pred HhhcCCHHHHHHHHHHHHhcC--C--CCcHHhHHHHHHH--HHhcCCHHHHH-----------HHHHHHHhCCCcccHH-
Q 006303 231 FGKKRDLVSALRAYDASKKHL--S--SPNMYICRTIIDV--CGICGDYMKSR-----------AIYEDLRSQNVTLNIY- 292 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~--~--~~~~~~~~~l~~~--~~~~g~~~~a~-----------~~~~~~~~~g~~~~~~- 292 (651)
+.+.+++++|..+++++.+.. . .++...|-.++.. ....++++.+. +.++.+.......+..
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 356788888888888776532 1 1233333333322 11223333333 5555543321111110
Q ss_pred H-H----HHHHHhhcCChHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc--c
Q 006303 293 V-F----NSLMNVNAHDLKFTLEVYKNMQKL----GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL--K 360 (651)
Q Consensus 293 ~-~----~~ll~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~ 360 (651)
. | ........|+++.|...|++.... +-.+ ...++..+...|...|++++|...+++.......... +
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 181 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNI 181 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchH
Confidence 0 0 122222347888888888887653 1111 2457788888888999999999999888875433211 1
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-C
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TITWSSLINACANAGLVEQAMHLFEEMLQA----GC-E 430 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~-~ 430 (651)
....+++.+...|...|++++|+..+++..+.... ++ ..++..+..+|...|++++|...+++..+. +. +
T Consensus 182 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 261 (383)
T 3ulq_A 182 RLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILP 261 (383)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccch
Confidence 12346778888889999999999988887743111 11 246778888888999999999998888762 22 3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccc
Q 006303 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFS 510 (651)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 510 (651)
....++..+..+|.+.|++++|...+++.....
T Consensus 262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------------------------------------------- 294 (383)
T 3ulq_A 262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYS----------------------------------------------- 294 (383)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------------------------
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------------------------------------
Confidence 335567888888888899999988887654321
Q ss_pred cCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHCCCCCC-HHHH
Q 006303 511 FKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPD-VVAY 586 (651)
Q Consensus 511 ~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~-~~~~ 586 (651)
... +-......+..+...|...|+ +++|..++++. +..|+ ...+
T Consensus 295 --------------------------~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~ 342 (383)
T 3ulq_A 295 --------------------------QKA---GDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFA 342 (383)
T ss_dssp --------------------------HHH---TCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHH
T ss_pred --------------------------HHc---CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 110 011112234556777777887 66666666554 22222 3456
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 587 TTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 587 ~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
..+...|...|++++|.+++++..+
T Consensus 343 ~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 343 IDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777888888888888888887763
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-10 Score=113.81 Aligned_cols=284 Identities=13% Similarity=-0.013 Sum_probs=193.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+......+...|++++|+..|+++.+...... ..++..+...+...|++++|.+.+++..+.
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--------------- 72 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTL--------------- 72 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---------------
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------
Confidence 34457778889999999999999888543211 367888888899999999999998876532
Q ss_pred hcCChHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-cccHHHHHHHHHHHHcccC
Q 006303 301 NAHDLKFTLEVYKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 378 (651)
.... +.. ....++..+...+...|++++|.+.+++.......... .....++..+...|...|+
T Consensus 73 -----------~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 138 (338)
T 3ro2_A 73 -----------ARTI---GDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK 138 (338)
T ss_dssp -----------HHHH---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhcc---cccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence 1111 101 12456777888899999999999999988775432211 1113477788888888999
Q ss_pred --------------------HHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC
Q 006303 379 --------------------WQMALKVKEDMLSA----GV-TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN 432 (651)
Q Consensus 379 --------------------~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~ 432 (651)
+++|...+++.... +. .....++..+...+...|++++|...+++..+... .++
T Consensus 139 ~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~ 218 (338)
T 3ro2_A 139 SFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD 218 (338)
T ss_dssp TSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC
Confidence 88888888776532 11 11234677777788888888888888887765310 011
Q ss_pred ----HHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 433 ----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 433 ----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
...+..+...+...|++++|...+++......
T Consensus 219 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-------------------------------------------- 254 (338)
T 3ro2_A 219 KAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLAR-------------------------------------------- 254 (338)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--------------------------------------------
Confidence 22566677777788888888887776542210
Q ss_pred cccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCC-CC
Q 006303 509 FSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS-PNHISWTILIDACGGSGNVEGALQILKIMRED----GMS-PD 582 (651)
Q Consensus 509 ~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~-p~ 582 (651)
..+.. ....++..+...|...|++++|...+++..+. +-. ..
T Consensus 255 --------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 255 --------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp --------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred --------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 00000 12446777888888899999999998887652 111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 583 VVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 583 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
..++..+...|.+.|++++|.+++++..+.
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 332 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMHFAEKHLEI 332 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 446777888889999999999999888753
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.8e-10 Score=117.61 Aligned_cols=197 Identities=9% Similarity=-0.081 Sum_probs=130.1
Q ss_pred CccHHHHHHHHhhcCCH-HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 221 DILFCNFVREFGKKRDL-VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
...+..+...|...|++ ++|++.|++..+... .+..+|..+..+|...|++++|++.|++..+..
T Consensus 102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 167 (474)
T 4abn_A 102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC------------- 167 (474)
T ss_dssp HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC-------------
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-------------
Confidence 35566677777888888 888888888877432 246788888888888888888888888877652
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc---------CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA---------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (651)
|+...+..+...+... |++++|.+.|++..+. .+.+...|..+.
T Consensus 168 ----------------------p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg 220 (474)
T 4abn_A 168 ----------------------KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM-----DVLDGRSWYILG 220 (474)
T ss_dssp ----------------------CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHH
T ss_pred ----------------------CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHH
Confidence 3334444455555555 6667777777766653 233455666666
Q ss_pred HHHHcc--------cCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 371 KVFADA--------KWWQMALKVKEDMLSAGVT--PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 371 ~~~~~~--------~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
.+|... |++++|+..|++..+.... -+...|..+..+|...|++++|...|++..+.. +.+...+..+.
T Consensus 221 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~ 299 (474)
T 4abn_A 221 NAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQ 299 (474)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 666666 6677777777776664320 256667777777777777777777777766654 33455566666
Q ss_pred HHHHhcCChhHHHHHHHHh
Q 006303 441 QACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~ 459 (651)
.++...|++++|++.+.++
T Consensus 300 ~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 300 QLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 6666666666666655443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=3.8e-08 Score=103.21 Aligned_cols=425 Identities=11% Similarity=0.040 Sum_probs=275.1
Q ss_pred HHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh----CCCCCccHHHHHHHHhhcCC---HHHHHHHHHH
Q 006303 174 FVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI----VPRADILFCNFVREFGKKRD---LVSALRAYDA 246 (651)
Q Consensus 174 A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~ 246 (651)
.+..|++.+..+ |.+...|..++..+.+.+.++.+..+|++ +|.....|...+..-.+.++ ++.+..+|+.
T Consensus 51 ~i~~lE~~l~~n--p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeR 128 (679)
T 4e6h_A 51 VIGKLNDMIEEQ--PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLAR 128 (679)
T ss_dssp HHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC--cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHH
Confidence 344455555544 78888999999999888999988877665 47788888888888888888 9999999999
Q ss_pred HHhcCC-CCcHHhHHHHHHHHHhcCCH--------HHHHHHHHHHHh-CCC-ccc-HHHHHHHHHhhc-----------C
Q 006303 247 SKKHLS-SPNMYICRTIIDVCGICGDY--------MKSRAIYEDLRS-QNV-TLN-IYVFNSLMNVNA-----------H 303 (651)
Q Consensus 247 ~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~g~-~~~-~~~~~~ll~~~~-----------~ 303 (651)
.+.... .|+...|...+....+.++. +.+.++|+.... .|. .++ ...|...+.... +
T Consensus 129 al~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~ 208 (679)
T 4e6h_A 129 CLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQ 208 (679)
T ss_dssp HTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHH
T ss_pred HHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHh
Confidence 988542 37788888888766655543 334577776554 365 443 467777776421 2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-------------cCCHHHHHHHHHHHHHhhhcCC---cc-------
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCL-------------AGNTVLAQEIYGEVKHLEAKGV---LK------- 360 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------~g~~~~a~~~~~~~~~~~~~~~---~~------- 360 (651)
+.+.+..+|++........-..+|......-.. ..+++.|...+..+..... +. ++
T Consensus 209 ~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~-~l~r~~p~~~~~~~ 287 (679)
T 4e6h_A 209 RVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITK-GLKRNLPITLNQAT 287 (679)
T ss_dssp HHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCCCCCCSSSTTCC
T ss_pred HHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHH-hHhhccccccccch
Confidence 456788888888753211112333222111111 1123445555555443221 10 00
Q ss_pred ----c-----c---HHHHHHHHHHHHccc-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 006303 361 ----L-----D---VFTYSTIVKVFADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAM-HL 420 (651)
Q Consensus 361 ----~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~ 420 (651)
| + ...|...+.---..+ ..+.+..+|++++.. ++-+...|...+..+.+.|+.++|. .+
T Consensus 288 ~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~i 366 (679)
T 4e6h_A 288 ESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKY 366 (679)
T ss_dssp TTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHH
T ss_pred hccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 1 0 134555544332222 134566788888865 3447888988888888999999997 99
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCC
Q 006303 421 FEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNS 500 (651)
Q Consensus 421 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 500 (651)
|++.... ++.+...|-..+....+.|++++|.++|+++....... ......
T Consensus 367 l~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~------------~~~~~~---------------- 417 (679)
T 4e6h_A 367 LKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLD------------LAALME---------------- 417 (679)
T ss_dssp HHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH------------HHHHHH----------------
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH------------hhhhhh----------------
Confidence 9999875 34566677778888889999999999999887531000 000000
Q ss_pred cccccccccccCC------------CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhcC-CCh
Q 006303 501 HYSSFDKRFSFKP------------TTTTYNILMKACC--TDYYRVKALMNEMRTV-GLSPNHISWTILIDACGGS-GNV 564 (651)
Q Consensus 501 ~~~~~~~~~~~~~------------~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~-~~~p~~~~~~~li~~~~~~-g~~ 564 (651)
-.| ....|...+.... ++.+.|..+|..+.+. +. .....|...+..-.+. ++.
T Consensus 418 ----------~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~ 486 (679)
T 4e6h_A 418 ----------DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDT 486 (679)
T ss_dssp ----------HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCC
T ss_pred ----------ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCH
Confidence 012 1224555555443 3688999999999875 21 1233343333333344 559
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006303 565 EGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHEVQQCLA 642 (651)
Q Consensus 565 ~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~a~~~~~ 642 (651)
+.|.++|+..++. ..-+...|..++......|+.+.|..+|++.....-.+ ....|..++..=.+.|+.+.+.++.+
T Consensus 487 e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~ 565 (679)
T 4e6h_A 487 KTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEK 565 (679)
T ss_dssp HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHH
T ss_pred HHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 9999999999885 34467778889998889999999999999998653222 34688889988889999888777444
Q ss_pred H
Q 006303 643 V 643 (651)
Q Consensus 643 ~ 643 (651)
-
T Consensus 566 R 566 (679)
T 4e6h_A 566 R 566 (679)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-08 Score=107.11 Aligned_cols=448 Identities=8% Similarity=0.014 Sum_probs=263.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhh
Q 006303 88 EEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLD 167 (651)
Q Consensus 88 ~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 167 (651)
.+.+..|++.+.. .|..+ .....++......+.++.+..+|+++.. ..|... ....+-+....+
T Consensus 49 ~d~i~~lE~~l~~--np~d~------~~W~~yi~~~~~~~~~~~aR~vyEraL~--~fP~~~------~lW~~Yi~~E~~ 112 (679)
T 4e6h_A 49 SDVIGKLNDMIEE--QPTDI------FLYVKLLKHHVSLKQWKQVYETFDKLHD--RFPLMA------NIWCMRLSLEFD 112 (679)
T ss_dssp SCHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCH------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH--CcCCH------HHHHHHHHHHHhcCcHHHHHHHHHHHHH--HCCCCH------HHHHHHHHHHHh
Confidence 3456667777777 56533 3334445556678899999999999998 445332 223333334445
Q ss_pred cch---HHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCCh----HHH----HHHhhh--------CCCCCccHHHHH
Q 006303 168 SGE---VEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDV----NLA----IRYACI--------VPRADILFCNFV 228 (651)
Q Consensus 168 ~~~---~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~A----~~~~~~--------~~~~~~~~~~l~ 228 (651)
.++ ++.+..+|++.+.....+++...|...+....+.++. +++ .++|+. -+.+...|...+
T Consensus 113 ~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi 192 (679)
T 4e6h_A 113 KMEELDAAVIEPVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYL 192 (679)
T ss_dssp C--CCCHHHHHHHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHH
T ss_pred hCCcchHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 677 9999999999987552235666676666544443332 122 233332 122223444444
Q ss_pred HHHh---------hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 229 REFG---------KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 229 ~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
.... .+++++.+.++|+.++......-..+|......-...+. ..+..++.+
T Consensus 193 ~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e------------------ 253 (679)
T 4e6h_A 193 HFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGE------------------ 253 (679)
T ss_dssp HHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHH------------------
T ss_pred HHHHhccccCcHHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHH------------------
Confidence 3322 233455666666666642110011222211111000000 001111111
Q ss_pred hhcCChHHHHHHHHHHHH--CCC----C-----------C-----C---HHhHHHHHHHHHhcC-------CHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQK--LGV----M-----------A-----D---MASYNILLKACCLAG-------NTVLAQEIY 347 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~--~~~----~-----------~-----~---~~~~~~ll~~~~~~g-------~~~~a~~~~ 347 (651)
...+++.|...+.++.. .++ + | + ...|...+..--..+ ..+.+..+|
T Consensus 254 -~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Y 332 (679)
T 4e6h_A 254 -LSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVY 332 (679)
T ss_dssp -HHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred -hhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH
Confidence 01122233333333211 011 0 0 0 123333333222211 123455677
Q ss_pred HHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 348 GEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL-KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
++.... .+-+...|-..+..+...|+.++|. .+|++.... ++.+...|...+....+.|+++.|.++|+++.+
T Consensus 333 e~aL~~-----~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 333 MQAAQH-----VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHH-----TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHH-----cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 777763 4557778888888888888888886 999998864 344666777788888889999999999998876
Q ss_pred cC---------CCCC------------HHHHHHHHHHHHhcCChhHHHHHHHHhhhc-ccccccccccCCchhhhhhhhh
Q 006303 427 AG---------CEPN------------SQCCNILLQACVEACQFDRAFRLFRSWTLS-KTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 427 ~~---------~~~~------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
.. ..|+ ..+|...+....+.|..+.|..+|....+. ..
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-------------------- 466 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-------------------- 466 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG--------------------
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC--------------------
Confidence 41 0132 236777777777889999999999987654 11
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh-hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC-TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGN 563 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~-~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~ 563 (651)
..+......+.+.-.+ ++.+.|..+|+...+. ..-+...|...++.....|+
T Consensus 467 --------------------------~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 467 --------------------------VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp --------------------------SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred --------------------------CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 1233444445555444 3589999999998876 33466677888888888899
Q ss_pred hHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 564 VEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLR 626 (651)
Q Consensus 564 ~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~ 626 (651)
.+.|..+|++.......+ ....|..++.--.+.|+.+.+.++.+++.+. .|+......++.
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ 582 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTN 582 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHH
Confidence 999999999998854322 3467888888888899999999999999864 344444444443
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-10 Score=114.93 Aligned_cols=303 Identities=7% Similarity=0.017 Sum_probs=199.8
Q ss_pred HHhcCCHHHHHHHHHHHHhC--CC--cccHHHHHHHHHhhc----CChHHHH-----------HHHHHHHHCCCCCCHHh
Q 006303 266 CGICGDYMKSRAIYEDLRSQ--NV--TLNIYVFNSLMNVNA----HDLKFTL-----------EVYKNMQKLGVMADMAS 326 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~----~~~~~a~-----------~~~~~m~~~~~~~~~~~ 326 (651)
+.+.+++++|..+++++.+. .+ .++...|-.++.... +..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 45689999999999998664 22 234445555555321 2333333 6666654421 11111
Q ss_pred H------HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--C---
Q 006303 327 Y------NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--V--- 394 (651)
Q Consensus 327 ~------~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~--- 394 (651)
+ ......+...|++++|.+.|++...........+ ...++..+...|...|++++|...+++..+.- .
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1 2245567788999999999998876432211111 34567888888888999999988888876531 1
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccc
Q 006303 395 -TPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC-EPN----SQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVAL 468 (651)
Q Consensus 395 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 468 (651)
.....++..+...|...|++++|...|++..+... .++ ..++..+..+|...|++++|.+.+++...
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~------- 252 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA------- 252 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-------
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-------
Confidence 11234677788888888888888888888765311 011 13667777788888888888888775432
Q ss_pred ccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCC-CCc
Q 006303 469 GEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGL-SPN 547 (651)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~-~p~ 547 (651)
+. ...+. ...
T Consensus 253 ------------------------------------------------------------------~~---~~~~~~~~~ 263 (383)
T 3ulq_A 253 ------------------------------------------------------------------VF---EESNILPSL 263 (383)
T ss_dssp ------------------------------------------------------------------HH---HHTTCGGGH
T ss_pred ------------------------------------------------------------------HH---HhhccchhH
Confidence 11 11122 224
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HH
Q 006303 548 HISWTILIDACGGSGNVEGALQILKIMRED----GMSPDVVAYTTAIKVCVRSKR---LKQAFSLFEEMKHYQIQPN-LV 619 (651)
Q Consensus 548 ~~~~~~li~~~~~~g~~~~A~~~~~~~~~~----~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~ 619 (651)
..++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|+.++++. +..|+ ..
T Consensus 264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~ 340 (383)
T 3ulq_A 264 PQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLED 340 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHH
Confidence 567888999999999999999999988762 111122335667788888998 77777777766 33333 35
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Q 006303 620 TYITLLRARSRYGSLHEVQQCLAVYQDMWK 649 (651)
Q Consensus 620 ~~~~l~~~~~~~g~~~~a~~~~~~~~~m~~ 649 (651)
.+..+...+...|++++|.+.++..-++.+
T Consensus 341 ~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 341 FAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 677888999999999999987776666543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.32 E-value=3e-10 Score=99.77 Aligned_cols=168 Identities=16% Similarity=0.123 Sum_probs=115.9
Q ss_pred CCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 219 RADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 219 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
++..+|..+...|.+.|++++|++.|++..+..+ -+..++..+..+|.+.|++++|+..+........
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~----------- 70 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADP-NNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT----------- 70 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-----------
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-----------
Confidence 3456788888888889999999999988887432 2577888888888888888888888887765421
Q ss_pred HhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 299 NVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 299 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
.+...+..+...+...++++.+.+.+.+.... .+.+...+..+...|.+.|+
T Consensus 71 -----------------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~-----~~~~~~~~~~lg~~~~~~g~ 122 (184)
T 3vtx_A 71 -----------------------TSAEAYYILGSANFMIDEKQAAIDALQRAIAL-----NTVYADAYYKLGLVYDSMGE 122 (184)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTC
T ss_pred -----------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CccchHHHHHHHHHHHHhCC
Confidence 23445555556666667777777777666653 23345566666667777777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 379 WQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 379 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
+++|+..|++..+.. +.+..+|..+..+|.+.|++++|.+.|++..+.
T Consensus 123 ~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 170 (184)
T 3vtx_A 123 HDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred chhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence 777777777666553 225566666777777777777777777766654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.32 E-value=1.9e-09 Score=103.38 Aligned_cols=216 Identities=8% Similarity=-0.013 Sum_probs=159.0
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc-------ccCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD-------AKWW-------QMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~-------~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
++|..+|+++... .+.+...|..++..+.. .|++ ++|..+|++.+..-.+-+...|..++.
T Consensus 33 ~~a~~~~~~al~~-----~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~ 107 (308)
T 2ond_A 33 KRVMFAYEQCLLV-----LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYAD 107 (308)
T ss_dssp HHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHH-----cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 5777788877764 24466677777766653 4664 888888888887311235667888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 407 ACANAGLVEQAMHLFEEMLQAGCEPN-SQ-CCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
.+.+.|++++|..+|+++.+. .|+ .. .|..+...+.+.|++++|..+|++.....
T Consensus 108 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------------- 164 (308)
T 2ond_A 108 YEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--------------------- 164 (308)
T ss_dssp HHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST---------------------
T ss_pred HHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---------------------
Confidence 888888888888888888875 332 33 78888888888888888888888876532
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH---hhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC---CTDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS 561 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~---~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 561 (651)
+.+...|....... .++.++|..+|+...+.. +-+...|..++..+.+.
T Consensus 165 ---------------------------p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~ 216 (308)
T 2ond_A 165 ---------------------------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHL 216 (308)
T ss_dssp ---------------------------TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTT
T ss_pred ---------------------------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence 12223333332221 367888888888887752 23677889999999999
Q ss_pred CChHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006303 562 GNVEGALQILKIMREDG-MSP--DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY 612 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 612 (651)
|++++|..+|++..+.. +.| ....|..++..+.+.|+.++|..+++++.+.
T Consensus 217 g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 217 NEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp CCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999863 454 4678888899999999999999999998853
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.29 E-value=4.5e-10 Score=114.58 Aligned_cols=217 Identities=11% Similarity=-0.036 Sum_probs=170.0
Q ss_pred hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 305 LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNT-VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 305 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
++.++..+++..... +.+...+..+...+...|++ ++|++.|++..+. .+.+...|..+..+|...|++++|.
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~g~~~~A~ 157 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKL-----EPELVEAWNQLGEVYWKKGDVTSAH 157 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 455666666655432 34788888999999999999 9999999999874 2345788999999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANA---------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA-------- 446 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~-------- 446 (651)
..|++..+. .|+...+..+...+... |++++|...|++..+.. +.+...|..+..+|...
T Consensus 158 ~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~ 234 (474)
T 4abn_A 158 TCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNP 234 (474)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCH
T ss_pred HHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhcccc
Confidence 999999986 46778899999999999 99999999999999875 45677888888888877
Q ss_pred CChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh
Q 006303 447 CQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC 526 (651)
Q Consensus 447 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~ 526 (651)
|++++|++.|++..... |.
T Consensus 235 g~~~~A~~~~~~al~~~-------------------------------------------------p~------------ 253 (474)
T 4abn_A 235 KISQQALSAYAQAEKVD-------------------------------------------------RK------------ 253 (474)
T ss_dssp HHHHHHHHHHHHHHHHC-------------------------------------------------GG------------
T ss_pred chHHHHHHHHHHHHHhC-------------------------------------------------CC------------
Confidence 66666666665544311 00
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLF 606 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~ 606 (651)
..-+...|..+...|...|++++|.+.|++..+.. +-+...+..+..++...|++++|++.+
T Consensus 254 -----------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 254 -----------------ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp -----------------GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred -----------------cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 00267788888999999999999999999988753 225667888888889999888888765
Q ss_pred HHH
Q 006303 607 EEM 609 (651)
Q Consensus 607 ~~m 609 (651)
+++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.29 E-value=7.6e-10 Score=97.14 Aligned_cols=129 Identities=12% Similarity=0.026 Sum_probs=62.2
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...|..+...|...|++++|++.|++..+. -+-+...+..+..+|.+.|++++|...+........ .+...+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~ 77 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA-----DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYY 77 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHH
Confidence 3444555555555555555555555555542 122344455555555555555555555555544321 1344444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
.+...+...++++.+...+.+..+.. +.+...+..+..+|.+.|++++|++.|++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEK 132 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHH
Confidence 44444555555555555555544432 23344444444444455555555444443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.29 E-value=8.7e-10 Score=109.19 Aligned_cols=291 Identities=13% Similarity=0.012 Sum_probs=170.7
Q ss_pred hhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccccc
Q 006303 72 DYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFD 151 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~ 151 (651)
.....+...+...|++++|+..+++.+......+.. ....++..+...+...|++++|...+++..+.. +.....
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 89 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFY---SRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDVW 89 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHH---HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchh---HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH--HhcCcH
Confidence 344555666778899999999999998863221111 123455667778899999999999999988741 111101
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHH
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREF 231 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~ 231 (651)
......+......+...|++++|+..+++.+.......... .+....++..+...+
T Consensus 90 ~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~------------------------~~~~~~~~~~la~~~ 145 (373)
T 1hz4_A 90 HYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ------------------------LPMHEFLVRIRAQLL 145 (373)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT------------------------STHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc------------------------CcHHHHHHHHHHHHH
Confidence 11122233344456668999999999988765321000000 000012344566666
Q ss_pred hhcCCHHHHHHHHHHHHhcCCC--C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-HHHHHH-----HH--H
Q 006303 232 GKKRDLVSALRAYDASKKHLSS--P--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-IYVFNS-----LM--N 299 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~--~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~~~~~~-----ll--~ 299 (651)
...|++++|...+++..+.... + ...++..+...+...|++++|...+++.......++ ...+.. .. .
T Consensus 146 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 225 (373)
T 1hz4_A 146 WAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYW 225 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHH
Confidence 6777777777777766543221 1 134566666777777777777777776654311111 011111 11 1
Q ss_pred hhcCChHHHHHHHHHHHHCCCCC---CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMA---DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFAD 375 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~ 375 (651)
...|+++.|...+++.......+ ....+..+...+...|++++|...++............++. ..+..+..++..
T Consensus 226 ~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 305 (373)
T 1hz4_A 226 QMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQ 305 (373)
T ss_dssp HHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHH
Confidence 13367777777776665432111 12245667788888899999999988876643222112222 255566677777
Q ss_pred ccCHHHHHHHHHHHHH
Q 006303 376 AKWWQMALKVKEDMLS 391 (651)
Q Consensus 376 ~~~~~~a~~~~~~m~~ 391 (651)
.|+.++|...+++...
T Consensus 306 ~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 306 AGRKSDAQRVLLDALK 321 (373)
T ss_dssp HTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHH
Confidence 8888888887777664
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.4e-10 Score=111.49 Aligned_cols=240 Identities=10% Similarity=-0.001 Sum_probs=154.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhc-------CCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCc
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKH-------LSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVT 288 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~ 288 (651)
.++..+...+...|++++|+..|+++.+. .......++..+...|...|++++|...+++.... +-.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 66778899999999999999999988873 22234667889999999999999999999988754 212
Q ss_pred c-cHHHHHHHHHhh--cCChHHHHHHHHHHHHC------CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-
Q 006303 289 L-NIYVFNSLMNVN--AHDLKFTLEVYKNMQKL------GVMA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG- 357 (651)
Q Consensus 289 ~-~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~- 357 (651)
| ....+..+...+ .|++++|...+++..+. +..| ....+..+...+...|++++|.+.|+++.......
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 2 233444444443 37888888888887664 2222 34567777888888888888888888888753221
Q ss_pred -C-ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-------CCCCCHH-------HHHHHHHHHHhcCCHHHHHHHH
Q 006303 358 -V-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTI-------TWSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 358 -~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~-------~~~~ll~~~~~~g~~~~a~~~~ 421 (651)
. .+....++..+...|...|++++|...++++.+. ...+... .+..+...+...+.+.++...+
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 267 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY 267 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHH
Confidence 0 1223446777888888888888888888887752 1111111 1222222333344444555555
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 422 EEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 422 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
....... +....++..+..+|.+.|++++|.+.|++....
T Consensus 268 ~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 268 KACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp ------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 5554432 334567888999999999999999999987653
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.28 E-value=2.7e-09 Score=102.31 Aligned_cols=182 Identities=15% Similarity=0.110 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc-H-HHHHHHHHhh--cCChHHHHHHHH
Q 006303 238 VSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN-I-YVFNSLMNVN--AHDLKFTLEVYK 313 (651)
Q Consensus 238 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~-~-~~~~~ll~~~--~~~~~~a~~~~~ 313 (651)
++|+.+|++..+.-.+.+...|..++..+.+.|++++|..+|++..+.. |+ . ..|..+.... .|+++.|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 7777777777763111245567777777777777777777777776642 22 1 1333333322 134444444444
Q ss_pred HHHHCCCCCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 314 NMQKLGVMADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 314 ~m~~~~~~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+..+.. +.+...|........ ..|++++|..+|+...+. .+.+...|..++..+.+.|++++|..+|++....
T Consensus 159 ~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~ 232 (308)
T 2ond_A 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS 232 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 444432 122222322222211 145555555555555542 1223445555555555555555555555555553
Q ss_pred C-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 393 G-VTP--NTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 393 ~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
. +.| ....|..++....+.|+.+.|..+++++.+.
T Consensus 233 ~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 233 GSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 2 222 2344555555555555555555555555544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-10 Score=110.20 Aligned_cols=247 Identities=13% Similarity=0.063 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA-------GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GC 429 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~ 429 (651)
..++..+...+...|++++|..+++++.+. ........+..+...|...|++++|...++++.+. +.
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 445666666666666666666666666542 12223456667777777778888887777777654 21
Q ss_pred -CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccc
Q 006303 430 -EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKR 508 (651)
Q Consensus 430 -~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 508 (651)
......+..+...|...|++++|.+.+++......... .
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-------------------~--------------------- 146 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVL-------------------G--------------------- 146 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHH-------------------C---------------------
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhc-------------------C---------------------
Confidence 22345678888899999999999999988765321000 0
Q ss_pred cccCC-CHHHHHHHHHHHh--hcHHHHHHHHHHHHHc------CCCC-cHHHHHHHHHHHhcCCChHHHHHHHHHHHHC-
Q 006303 509 FSFKP-TTTTYNILMKACC--TDYYRVKALMNEMRTV------GLSP-NHISWTILIDACGGSGNVEGALQILKIMRED- 577 (651)
Q Consensus 509 ~~~~~-~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~------~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~- 577 (651)
+-.| ....+..+...+. +++++|...++++.+. +..| ...++..+...|...|++++|..+++++.+.
T Consensus 147 -~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 225 (311)
T 3nf1_A 147 -KDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA 225 (311)
T ss_dssp -TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred -CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 0012 2334555555544 4788888888877664 2223 3446777888888888888888888887752
Q ss_pred ------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 578 ------GMSPDV-------VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCLAVY 644 (651)
Q Consensus 578 ------~~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 644 (651)
...+.. ..+..+...+...+.+.++...++..... -..+..++..+..+|.+.|++++|.+.++..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 304 (311)
T 3nf1_A 226 HEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAA 304 (311)
T ss_dssp HHHHHC------CCHHHHHHHHHHC-------CCSCCCC----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 111111 11222223333344445555555555432 1334567888999999999999999987777
Q ss_pred HHHHhcC
Q 006303 645 QDMWKAG 651 (651)
Q Consensus 645 ~~m~~~g 651 (651)
-++..+|
T Consensus 305 l~l~~~~ 311 (311)
T 3nf1_A 305 MRSRKQG 311 (311)
T ss_dssp HHHHC--
T ss_pred HHHhhcC
Confidence 6665544
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.6e-09 Score=105.91 Aligned_cols=132 Identities=8% Similarity=-0.117 Sum_probs=95.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCC-ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC--C---C-CCHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGV-LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG--V---T-PNTITWS 402 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~--~---~-~~~~~~~ 402 (651)
....+...|++++|...|++......... ......++..+...|...|+++.|...+++..+.. . . ....++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44556788999999999999887432211 11124567888889999999999999998877531 1 1 1245677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..+|...|++++|.+.|++..+. +.. ....++..+..+|...|++++|.+.+++...
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888999999999999999887763 111 1124677788888899999999988877553
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-09 Score=108.20 Aligned_cols=238 Identities=11% Similarity=0.070 Sum_probs=157.1
Q ss_pred cHHHHHHHH--hhcCCHHHHHHHHHHHHhcC--CC--CcHHhHHHHHHHH--HhcCCHHHHH---------HHHHHHHhC
Q 006303 223 LFCNFVREF--GKKRDLVSALRAYDASKKHL--SS--PNMYICRTIIDVC--GICGDYMKSR---------AIYEDLRSQ 285 (651)
Q Consensus 223 ~~~~l~~~~--~~~g~~~~a~~~~~~~~~~~--~~--~~~~~~~~l~~~~--~~~g~~~~a~---------~~~~~~~~~ 285 (651)
+-..|-+.| .+.+++++|.++++++.+.. .+ .+...|-.++..- ...+.++.+. +.++.+...
T Consensus 12 v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 12 VGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 334445555 67888999998888876532 11 2333344443321 1112222222 555554332
Q ss_pred CCccc-HH-----HHHHHHHhhcCChHHHHHHHHHHHHCCC-CC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 286 NVTLN-IY-----VFNSLMNVNAHDLKFTLEVYKNMQKLGV-MA----DMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 286 g~~~~-~~-----~~~~ll~~~~~~~~~a~~~~~~m~~~~~-~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
....+ .. .+........|+++.|...|++...... .+ ...++..+...|...|+++.|...+++.....
T Consensus 92 ~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~ 171 (378)
T 3q15_A 92 QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIY 171 (378)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 11111 11 1112222344899999999999875411 12 24578888999999999999999999988764
Q ss_pred hcCCc-c-ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-
Q 006303 355 AKGVL-K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ- 426 (651)
Q Consensus 355 ~~~~~-~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~- 426 (651)
..... . ....+++.+..+|...|++++|...|++..+. +.. ....++..+..+|...|++++|...|++..+
T Consensus 172 ~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~ 251 (378)
T 3q15_A 172 QNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKV 251 (378)
T ss_dssp HTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 33211 1 12457888999999999999999999988753 111 1235688899999999999999999999887
Q ss_pred ----cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 427 ----AGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 427 ----~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.. +....++..+..+|.+.|++++|...+++...
T Consensus 252 ~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 289 (378)
T 3q15_A 252 SREKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLD 289 (378)
T ss_dssp HHHHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33 33366788889999999999999999988664
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.19 E-value=9.9e-09 Score=101.55 Aligned_cols=207 Identities=11% Similarity=-0.055 Sum_probs=102.8
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccHHHHHHHHH
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKHLSSPNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNIYVFNSLMN 299 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~~~~~~ll~ 299 (651)
..+...+...|++++|...+++........+. .+++.+...+...|++++|...+++....... .+..
T Consensus 18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 90 (373)
T 1hz4_A 18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWH------- 90 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH-------
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHH-------
Confidence 34455666778888888888887764322222 24566667777788888888888776542100 0000
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc--c-cHHHHHHHHHHHHcc
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--L-DVFTYSTIVKVFADA 376 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~-~~~~~~~l~~~~~~~ 376 (651)
....++..+...+...|++++|...+++........... | ....+..+...+...
T Consensus 91 ----------------------~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~ 148 (373)
T 1hz4_A 91 ----------------------YALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148 (373)
T ss_dssp ----------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHT
T ss_pred ----------------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHh
Confidence 001223344445555555555555555554432211111 2 233444455555555
Q ss_pred cCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHH----HHHHHHHhc
Q 006303 377 KWWQMALKVKEDMLSAGVT----PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEP--NSQCCN----ILLQACVEA 446 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~----~ll~~~~~~ 446 (651)
|++++|...+++....... ....++..+...+...|++++|...+++.......+ ...... ..+..+...
T Consensus 149 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T 1hz4_A 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMT 228 (373)
T ss_dssp TCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHC
Confidence 5555555555555432111 112344455555555566666666655554321111 111111 122234556
Q ss_pred CChhHHHHHHHHhh
Q 006303 447 CQFDRAFRLFRSWT 460 (651)
Q Consensus 447 g~~~~a~~~~~~~~ 460 (651)
|++++|...+++..
T Consensus 229 g~~~~A~~~~~~a~ 242 (373)
T 1hz4_A 229 GDKAAAANWLRHTA 242 (373)
T ss_dssp TCHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhCC
Confidence 66666666665543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=1.1e-09 Score=116.20 Aligned_cols=161 Identities=14% Similarity=0.075 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
.+++.|...|.+.|++++|++.|++.++. .| +..+|+.+..+|.+.|++++|++.|++..+.... +...|..+-.+
T Consensus 10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~ 86 (723)
T 4gyw_A 10 DSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNT 86 (723)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence 44555555555555555555555555542 23 3445555555555555555555555554443110 01111111111
Q ss_pred h--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccC
Q 006303 301 N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKW 378 (651)
Q Consensus 301 ~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 378 (651)
+ .|++++|++.|++..+.. +-+...|+.+..+|...|++++|++.|++..++ -+-+...+..+..+|...|+
T Consensus 87 l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l-----~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 87 LKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL-----KPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTC
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHhhhhhHHHhccc
Confidence 0 012222222222222211 123455666666666666666666666666553 12234455566666666666
Q ss_pred HHHHHHHHHHHHH
Q 006303 379 WQMALKVKEDMLS 391 (651)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (651)
+++|.+.++++.+
T Consensus 161 ~~~A~~~~~kal~ 173 (723)
T 4gyw_A 161 WTDYDERMKKLVS 173 (723)
T ss_dssp CTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.6e-09 Score=112.29 Aligned_cols=166 Identities=12% Similarity=0.047 Sum_probs=126.3
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
+..+|+.|...|.+.|++++|++.|++..+.. +-+..+|..+..+|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~----------------------------------P~~~~a~~nLg~~l 53 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF----------------------------------PEFAAAHSNLASVL 53 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------SCCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------------------------CCCHHHHHHHHHHH
Confidence 46789999999999999999999999887652 12466777778888
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLV 414 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~ 414 (651)
.+.|++++|++.|++..++ -+-+...|..+..+|.+.|++++|++.|++.++... -+...|..+..+|.+.|++
T Consensus 54 ~~~g~~~eA~~~~~~Al~l-----~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P-~~~~a~~~Lg~~~~~~g~~ 127 (723)
T 4gyw_A 54 QQQGKLQEALMHYKEAIRI-----SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINP-AFADAHSNLASIHKDSGNI 127 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred HHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 8888888888888887764 133466777888888888888888888888776542 2567788888888888888
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 415 EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 415 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
++|+..|++..+.. +-+...+..+..+|...|++++|.+.+++..+
T Consensus 128 ~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 128 PEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 88888888877764 34566777788888888888888777776654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.2e-08 Score=89.33 Aligned_cols=167 Identities=13% Similarity=0.055 Sum_probs=130.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (651)
...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~~~~~~ 53 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD----------------------------------AFDVDVALHLGIAYV 53 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT----------------------------------SCCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----------------------------------ccChHHHHHHHHHHH
Confidence 3456666777777788888877777665431 235667778888888
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|.+.++.+.+. .+.+...+..+...+...|++++|...++++.... +.+...+..+...+...|+++
T Consensus 54 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 54 KTGAVDRGTELLERSLAD-----APDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HcCCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHH
Confidence 889999999988888764 24466778888888888999999999998888764 346778888888889999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 416 QAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 416 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
+|..+++++.+.. +.+...+..+..+|...|++++|.+.+++.....
T Consensus 128 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 174 (186)
T 3as5_A 128 EAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 9999999888775 4567788888888999999999999998876543
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=8.1e-09 Score=90.40 Aligned_cols=165 Identities=8% Similarity=-0.001 Sum_probs=118.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|+..++++.+... .+..++..+...+...|++++|...++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--------------- 72 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA--------------- 72 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------
Confidence 4456677788888888888888888776422 356778888888888888888888888776541
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++
T Consensus 73 -------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~ 128 (186)
T 3as5_A 73 -------------------PDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEA-----NPINFNVRFRLGVALDNLGRFDE 128 (186)
T ss_dssp -------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CcHhHHHHHHHHHHHHHcCcHHH
Confidence 224556666777777777777777777777653 23456667777777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 382 ALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 382 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 129 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 173 (186)
T 3as5_A 129 AIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 777777777653 335667777777777788888888777777654
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-09 Score=99.48 Aligned_cols=222 Identities=12% Similarity=0.049 Sum_probs=128.4
Q ss_pred HHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCcc-cHHHHHHHHHhh--cCChHHHH
Q 006303 239 SALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ------NVTL-NIYVFNSLMNVN--AHDLKFTL 309 (651)
Q Consensus 239 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------g~~~-~~~~~~~ll~~~--~~~~~~a~ 309 (651)
+|+++++++.....+....++..+...|...|++++|+..+++..+. +-.| ...++..+-..+ .|++++|.
T Consensus 26 ~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 105 (283)
T 3edt_B 26 QALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAE 105 (283)
T ss_dssp HHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHH
Confidence 44444444443222234678899999999999999999999988754 1112 233344444433 36777887
Q ss_pred HHHHHHHHC-----CC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CC-ccccHHHHHHHHHHHHcccCH
Q 006303 310 EVYKNMQKL-----GV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GV-LKLDVFTYSTIVKVFADAKWW 379 (651)
Q Consensus 310 ~~~~~m~~~-----~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~-~~~~~~~~~~l~~~~~~~~~~ 379 (651)
..+.+.... +. +....++..+...+...|++++|.+.|+++...... +. .+....++..+...|...|++
T Consensus 106 ~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 185 (283)
T 3edt_B 106 PLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKY 185 (283)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCH
Confidence 777777653 11 112456667777777788888888888777764211 00 112344667777777788888
Q ss_pred HHHHHHHHHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 380 QMALKVKEDMLSA-------GVTPN-TITWSSLINACANAGL------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 380 ~~a~~~~~~m~~~-------~~~~~-~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
++|..+++++.+. ...+. ...+..+...+...+. +..+...++.... ..+....++..+..+|.+
T Consensus 186 ~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~ 264 (283)
T 3edt_B 186 QDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRR 264 (283)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHH
Confidence 8888877777642 11111 1223323222222222 2222222211110 112233467888899999
Q ss_pred cCChhHHHHHHHHhhh
Q 006303 446 ACQFDRAFRLFRSWTL 461 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~ 461 (651)
.|++++|...|++..+
T Consensus 265 ~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 265 QGKLEAAHTLEDCASR 280 (283)
T ss_dssp TTCHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHH
Confidence 9999999999998764
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.05 E-value=3.2e-08 Score=90.13 Aligned_cols=191 Identities=10% Similarity=0.019 Sum_probs=106.5
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+...|++++|+..|++..+....++...+..+..++...|++++|+..|++..+.... +...|..+-.++
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 86 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAY 86 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHH
Confidence 4566667777777777777777777777544355666666777777777777777777777655321 222222222222
Q ss_pred --cCChHHHHHHHHHHHHCCCCCCH-------HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHH
Q 006303 302 --AHDLKFTLEVYKNMQKLGVMADM-------ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTI 369 (651)
Q Consensus 302 --~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l 369 (651)
.|++++|+..+++..+.. +.+. ..|..+...+...|++++|++.|+++.+ ..|+ ...|..+
T Consensus 87 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~------~~p~~~~~~~~~~l 159 (228)
T 4i17_A 87 RDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD------VTSKKWKTDALYSL 159 (228)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT------SSCHHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh------cCCCcccHHHHHHH
Confidence 245555555555554432 1233 3455666666667777777777776665 3343 3455555
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+|...|+ .+++++...+ ..+...|.... ....+.+++|...|++..+..
T Consensus 160 ~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 555544432 2333333332 11233333322 223345677777777777653
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.6e-09 Score=99.21 Aligned_cols=140 Identities=14% Similarity=0.117 Sum_probs=111.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc---CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC------C
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK---GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA------G 393 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~------~ 393 (651)
...++..+...|...|++++|...++++...... +..+....++..+...|...|++++|...++++... .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 4678888999999999999999999998875311 111334567899999999999999999999998764 1
Q ss_pred -CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 394 -VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA------GCEP-NSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 394 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.+....++..+...+...|++++|..+++++.+. +..| ...++..+..+|...|++++|...+++....
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~ 198 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTR 198 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1224567888999999999999999999998875 1122 3457888889999999999999999987653
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.02 E-value=6.8e-08 Score=87.90 Aligned_cols=198 Identities=11% Similarity=0.011 Sum_probs=116.8
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
.|+..+......+...|++++|+..|++..+....++...+..+..++...|++++|...|++..+.. +.+...+..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 34556666666677777777777777776665433566666667777777777777777777777653 23445666677
Q ss_pred HHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCC-H----
Q 006303 441 QACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPT-T---- 515 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---- 515 (651)
.+|...|++++|...+++.... .|+ .
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~-------------------------------------------------~p~~~~~~~ 114 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA-------------------------------------------------VPGNATIEK 114 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-------------------------------------------------STTCHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH-------------------------------------------------CCCcHHHHH
Confidence 7777777777777777766543 222 2
Q ss_pred ---HHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 516 ---TTYNILMKACC--TDYYRVKALMNEMRTVGLSPN---HISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYT 587 (651)
Q Consensus 516 ---~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~ 587 (651)
..|..+-..+. +++++|...|+++.+. .|+ ...|..+...|... +..+++++...+ ..+...|.
T Consensus 115 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~-~~~~~~~~ 186 (228)
T 4i17_A 115 LYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN-----GADVLRKATPLA-SSNKEKYA 186 (228)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGT-TTCHHHHH
T ss_pred HHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcc-cCCHHHHH
Confidence 11222222222 4677788887777763 454 44566666666433 334445554432 22344443
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 588 TAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 588 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
... ....+.+++|...+++..+. .|+...
T Consensus 187 ~~~--~~~~~~~~~A~~~~~~a~~l--~p~~~~ 215 (228)
T 4i17_A 187 SEK--AKADAAFKKAVDYLGEAVTL--SPNRTE 215 (228)
T ss_dssp HHH--HHHHHHHHHHHHHHHHHHHH--CTTCHH
T ss_pred HHH--HHHHHHHHHHHHHHHHHhhc--CCCCHH
Confidence 333 23345678899998888864 455443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=2e-08 Score=95.24 Aligned_cols=215 Identities=11% Similarity=0.020 Sum_probs=131.6
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAP 146 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~ 146 (651)
....|...+..+...|++++|+..|++.+... .+|.. ...++..++..|...|++++|+..|++..+. .+
T Consensus 36 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~~ 108 (292)
T 1qqe_A 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FT 108 (292)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HH
Confidence 45678888899999999999999999988762 12221 2556788899999999999999999999874 22
Q ss_pred cccccchhhHHHHHHHHHHhhc-chHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHH
Q 006303 147 LELFDGSGFKLLKNECQRLLDS-GEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFC 225 (651)
Q Consensus 147 ~~~~~~~~~~~l~~~~~~~~~~-~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 225 (651)
...........+.+....+... |++++|+..|++.+... |.. ++... ...++.
T Consensus 109 ~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~ 162 (292)
T 1qqe_A 109 HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY--AQD--------------QSVAL----------SNKCFI 162 (292)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HhC--------------CChHH----------HHHHHH
Confidence 1111111223344444455554 88888888888776532 110 00000 013456
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCc-ccH---HHHH
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQNVT-LNI---YVFN 295 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~-~~~---~~~~ 295 (651)
.+...|.+.|++++|+..|++..+....... ..|..+..++...|++++|+..|++..+.... ++. ..+.
T Consensus 163 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~ 242 (292)
T 1qqe_A 163 KCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLK 242 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 6777777778888888887777764332211 14566667777778888888887777654211 111 1223
Q ss_pred HHHHhhc----CChHHHHHHHHHHHH
Q 006303 296 SLMNVNA----HDLKFTLEVYKNMQK 317 (651)
Q Consensus 296 ~ll~~~~----~~~~~a~~~~~~m~~ 317 (651)
.+...+. +++++|+..|+.+..
T Consensus 243 ~l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 243 SLIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHHcCCHHHHHHHHHHhccCCc
Confidence 3333332 356666666655543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.93 E-value=4.7e-07 Score=83.94 Aligned_cols=210 Identities=11% Similarity=0.013 Sum_probs=142.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHH
Q 006303 229 REFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFT 308 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a 308 (651)
+-..-.|.+..++.-...+. .........-+.++|...|+++.. ....|....+..+.....++ +
T Consensus 21 kn~fy~G~yq~~i~e~~~~~---~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~~~~---a 85 (310)
T 3mv2_B 21 KQNYYTGNFVQCLQEIEKFS---KVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFLDTK---N 85 (310)
T ss_dssp HHHHTTTCHHHHTHHHHTSS---CCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHHTTT---C
T ss_pred HHHHHhhHHHHHHHHHHhcC---ccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHhccc---H
Confidence 34445688888887333221 111223333445777778877531 12234433444443333332 6
Q ss_pred HHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 309 LEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 309 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+..|+++...+ .++..++..+..++...|++++|++++.+... .+...-+...+..++..+.+.|+.+.|.+.++.
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~---~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~ 161 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGID---NDEAEGTTELLLLAIEVALLNNNVSTASTIFDN 161 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT---SSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhc---cCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 77788777655 45666667888999999999999999998754 110013667888899999999999999999999
Q ss_pred HHHCCCCC-----CHHHHHHHHHHHH--hcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHh
Q 006303 389 MLSAGVTP-----NTITWSSLINACA--NAG--LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSW 459 (651)
Q Consensus 389 m~~~~~~~-----~~~~~~~ll~~~~--~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 459 (651)
|.+. .| +..+...+..++. ..| ++.+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+
T Consensus 162 ~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 162 YTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9875 55 3566666666633 334 899999999998765 455444455555899999999999999876
Q ss_pred hh
Q 006303 460 TL 461 (651)
Q Consensus 460 ~~ 461 (651)
.+
T Consensus 238 ~~ 239 (310)
T 3mv2_B 238 LS 239 (310)
T ss_dssp HS
T ss_pred HH
Confidence 54
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.92 E-value=1e-07 Score=86.42 Aligned_cols=195 Identities=7% Similarity=-0.048 Sum_probs=131.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+-.++..+...|++++|+..|++++.. .|.... ...++..++..+...|++++|+..|+++.+. .|+...
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~---~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~ 76 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNR--YPFGPY---SQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPN 76 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTT---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCc
Confidence 455667788889999999999999999987 443211 2456677888899999999999999999984 444321
Q ss_pred cchhhHHHHHHH---------------HHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhh
Q 006303 151 DGSGFKLLKNEC---------------QRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC 215 (651)
Q Consensus 151 ~~~~~~~l~~~~---------------~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 215 (651)
....+-.+..+. ..+.+.|++++|+..|++++... |++...+......-.-.+..
T Consensus 77 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~-------- 146 (225)
T 2yhc_A 77 IDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRL-------- 146 (225)
T ss_dssp HHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHH--------
Confidence 111111111110 01123688999999999998755 55554443222111000000
Q ss_pred hCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc--HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 216 IVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 216 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
......+...|.+.|++++|+..|+++.+...... ..++..+..+|.+.|++++|++.++.+...+.
T Consensus 147 -----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 147 -----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp -----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred -----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 01224567888999999999999999988543211 35788899999999999999999998887643
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-08 Score=93.30 Aligned_cols=191 Identities=6% Similarity=-0.040 Sum_probs=132.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+-.++..+...|++++|+..|+.++.. .|+.. ....++..++..+...|++++|+..|++..+. .|+...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~---~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~p~~~~ 87 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTY--GRTHE---WAADAQFYLARAYYQNKEYLLAASEYERFIQI--YQIDPR 87 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGG--CSCST---THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTT
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCc---chHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--CCCCch
Confidence 677778888999999999999999999988 44421 02456677888899999999999999999985 343221
Q ss_pred cchhhHHHHHHHHHHhh--------cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCc
Q 006303 151 DGSGFKLLKNECQRLLD--------SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADI 222 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 222 (651)
....+......+.. .|++++|+..|++++... |++......+.......+.. ..
T Consensus 88 ---~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~-------------~~ 149 (261)
T 3qky_A 88 ---VPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL-------------AR 149 (261)
T ss_dssp ---HHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH-------------HH
T ss_pred ---hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH-------------HH
Confidence 22233344445555 899999999999998855 55444333221111100000 12
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHhCC
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGIC----------GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~g 286 (651)
.+..+...|.+.|++++|+..|+++.+..... ....+..+..+|... |++++|+..|+.+.+..
T Consensus 150 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 150 KQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 24567788888889999998888888754321 245677777777765 78888888888887763
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-07 Score=77.61 Aligned_cols=130 Identities=15% Similarity=0.168 Sum_probs=103.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|..+++++...+ +.+...+..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 76 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLG 76 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc-----CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHH
Confidence 4667778888888999999988888763 23456777888888888889999999988887764 33667788888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+...|++++|..+++++.+.. +.+...+..+..++.+.|++++|...++++...
T Consensus 77 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 77 NAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 88888899999999998888764 445677888888888899999998888877653
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.88 E-value=1.3e-07 Score=89.59 Aligned_cols=213 Identities=10% Similarity=-0.027 Sum_probs=148.9
Q ss_pred hHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 207 VNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYED 281 (651)
Q Consensus 207 ~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 281 (651)
+++|...+.. .+..|...|++++|+..|++..+. |..+ ...+|+.+..+|.+.|++++|+..|++
T Consensus 33 ~~~A~~~~~~----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 102 (292)
T 1qqe_A 33 FEEAADLCVQ----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLEN 102 (292)
T ss_dssp HHHHHHHHHH----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 6666655443 356778889999999988877653 2112 256888899999999999999999887
Q ss_pred HHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCC-CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHhhhcCCc
Q 006303 282 LRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMA-DMASYNILLKACCLA-GNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 282 ~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~-g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
..+. +. ..|-.. -..+++.+...|... |++++|+..|++..++......
T Consensus 103 Al~l--------------------------~~---~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~ 153 (292)
T 1qqe_A 103 AIQI--------------------------FT---HRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS 153 (292)
T ss_dssp HHHH--------------------------HH---HTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHH--------------------------HH---HcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC
Confidence 6542 11 111000 134677888899996 9999999999999885432111
Q ss_pred ccc-HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 006303 360 KLD-VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT------ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN 432 (651)
Q Consensus 360 ~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 432 (651)
... ..+++.+...+.+.|++++|+..|++..+....... ..|..+..++...|++++|...|++..+.. |+
T Consensus 154 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~ 231 (292)
T 1qqe_A 154 VALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PN 231 (292)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----
T ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC
Confidence 111 356888999999999999999999999986433222 157778889999999999999999987642 32
Q ss_pred H------HHHHHHHHHHH--hcCChhHHHHHHHHhh
Q 006303 433 S------QCCNILLQACV--EACQFDRAFRLFRSWT 460 (651)
Q Consensus 433 ~------~~~~~ll~~~~--~~g~~~~a~~~~~~~~ 460 (651)
. ..+..++.+|. ..+++++|+..|+++.
T Consensus 232 ~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 232 FADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp ------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 1 13444556664 3456888888886654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.87 E-value=1.9e-08 Score=87.32 Aligned_cols=166 Identities=11% Similarity=0.013 Sum_probs=117.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..|+++.+. .|+..
T Consensus 6 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~------~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~- 74 (176)
T 2r5s_A 6 DEQLLKQVSELLQQGEHAQALNVIQTLSDE--LQS------RGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNS- 74 (176)
T ss_dssp CTTHHHHHHHHHHTTCHHHHHHHHHTSCHH--HHT------SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChH-
Confidence 455677788889999999999999998887 666 3555667788899999999999999998764 33211
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
..... . ...+...+...+|+..+++.+... |.+..++..+...
T Consensus 75 ---~~~~~-~-~~~~~~~~~~~~a~~~~~~al~~~--------------------------------P~~~~~~~~la~~ 117 (176)
T 2r5s_A 75 ---YKSLI-A-KLELHQQAAESPELKRLEQELAAN--------------------------------PDNFELACELAVQ 117 (176)
T ss_dssp ---HHHHH-H-HHHHHHHHTSCHHHHHHHHHHHHS--------------------------------TTCHHHHHHHHHH
T ss_pred ---HHHHH-H-HHHHHhhcccchHHHHHHHHHHhC--------------------------------CCCHHHHHHHHHH
Confidence 11111 1 011111122234566666665533 3445677778888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
+...|++++|+..|+++.+....+ +...+..+..++...|+.++|...|++...
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 888999999999999888854432 356788888889999999999988887653
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.3e-07 Score=84.56 Aligned_cols=113 Identities=13% Similarity=0.092 Sum_probs=69.5
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHh----------------HHHHhhhhcChhHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVAS----------------GIVKSIREGRIDCVVG 134 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~----------------~~~~~~~~g~~~~a~~ 134 (651)
...+...+..+...|++++|+..|+++++. .|+.. .++.. ++..+...|++++|+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~------~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 75 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRT------EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYL 75 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHH------HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCh------HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHH
Confidence 445566677788899999999999999998 77743 23333 5556666677777777
Q ss_pred HHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHH
Q 006303 135 VLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLC 201 (651)
Q Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~ 201 (651)
.|++.++. .|+.. ..+......+...|++++|+..|++++... |++...+..++..+
T Consensus 76 ~~~~al~~--~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 76 FYKELLQK--APNNV------DCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHH--CTTCH------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHH--CCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 76666663 33221 222233334444666666666666666643 54544444444444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.5e-07 Score=86.05 Aligned_cols=192 Identities=9% Similarity=-0.087 Sum_probs=136.9
Q ss_pred ccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhH-------HHHhhhhcChhHHHHHHHHHHHcCCCccccccchh-
Q 006303 83 KDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASG-------IVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSG- 154 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~-------~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~- 154 (651)
..++...|++.|.++.+. +|+. .++...+ ...+.+.++..+++..+.+-.+ +.|+.......
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~------~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~ 87 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESA------CDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAI 87 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEEC
T ss_pred cCCCHHHHHHHHHHHHHh--Chhh------hHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhcc
Confidence 579999999999999998 7763 3333333 4556666777777777776665 55544322222
Q ss_pred --------------hHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCC
Q 006303 155 --------------FKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRA 220 (651)
Q Consensus 155 --------------~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 220 (651)
-.+.+..+..+...|++++|.++|+.+...+ |.+. ....++..+.+.+++++|+..|......
T Consensus 88 ~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 88 GGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp CTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred CCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH-HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 1122333345556899999999999887644 5555 6677777888999999999998765332
Q ss_pred ------CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 221 ------DILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 221 ------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
..++..+..++.+.|++++|++.|++.......| ..........++.+.|+.++|..+|+++....+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 2367778889999999999999999887543324 344667777788889999999999999888743
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.83 E-value=8.5e-07 Score=82.26 Aligned_cols=167 Identities=8% Similarity=-0.002 Sum_probs=88.3
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcc-----cHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSS-PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTL-----NIYV 293 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~-----~~~~ 293 (651)
+..++..+..++...|++++|++++.+.+..+.. -+...+..++..+.+.|+.+.|.+.++.|.+. .| +..+
T Consensus 99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~ 176 (310)
T 3mv2_B 99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEM 176 (310)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHH
Confidence 3344556677777777788887777777654431 24556667777777777777777777777655 33 1223
Q ss_pred HHHHHHh----hcC--ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CC---cccc
Q 006303 294 FNSLMNV----NAH--DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GV---LKLD 362 (651)
Q Consensus 294 ~~~ll~~----~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~---~~~~ 362 (651)
...+..+ ..| +..+|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.... .. -+.+
T Consensus 177 l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~ 254 (310)
T 3mv2_B 177 ILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYK 254 (310)
T ss_dssp HHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSH
T ss_pred HHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCC
Confidence 2222222 112 566666666665443 233223333334555666666666666554432100 00 0223
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
..+...+|......|+ +|.+++.++.+.
T Consensus 255 ~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 255 PTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp HHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 3344334433334444 555555555554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.9e-07 Score=85.63 Aligned_cols=172 Identities=11% Similarity=-0.021 Sum_probs=115.8
Q ss_pred CCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHH
Q 006303 220 ADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNS 296 (651)
Q Consensus 220 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ 296 (651)
+...+..+...+.+.|++++|+..|+++.+.... + ..++..+..+|.+.|++++|+..|+...+.....
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~------- 85 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID------- 85 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-------
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC-------
Confidence 3466777888888999999999999998875422 2 5678888888999999999999999887753210
Q ss_pred HHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--------cCCHHHHHHHHHHHHHhhhcCCccccHHH---
Q 006303 297 LMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL--------AGNTVLAQEIYGEVKHLEAKGVLKLDVFT--- 365 (651)
Q Consensus 297 ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~--- 365 (651)
+.....+..+..++.. .|++++|...|+++.... +.+...
T Consensus 86 ------------------------~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-----p~~~~~~~a 136 (261)
T 3qky_A 86 ------------------------PRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-----PNHELVDDA 136 (261)
T ss_dssp ------------------------TTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-----TTCTTHHHH
T ss_pred ------------------------chhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-----cCchhHHHH
Confidence 0012233334444444 555666666665555421 111111
Q ss_pred --------------HHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc----------CCHHHHHH
Q 006303 366 --------------YSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITWSSLINACANA----------GLVEQAMH 419 (651)
Q Consensus 366 --------------~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~----------g~~~~a~~ 419 (651)
+..+...|.+.|++++|+..|+++++..... ....+..+..+|... |++++|..
T Consensus 137 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~ 216 (261)
T 3qky_A 137 TQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVE 216 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHH
Confidence 2456778888899999999998888753211 234677777777765 88899999
Q ss_pred HHHHHHHcC
Q 006303 420 LFEEMLQAG 428 (651)
Q Consensus 420 ~~~~~~~~~ 428 (651)
.|+++.+..
T Consensus 217 ~~~~~~~~~ 225 (261)
T 3qky_A 217 LYERLLQIF 225 (261)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 999888764
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=8.7e-08 Score=90.47 Aligned_cols=165 Identities=10% Similarity=-0.041 Sum_probs=105.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..++++.+. .|+..
T Consensus 117 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~------~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~- 185 (287)
T 3qou_A 117 EELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQ------NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTR- 185 (287)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTS------CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHH-
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCc------chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchH-
Confidence 445556666666667777777777666666 554 2334455556666667777776666666553 23211
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
...+.....+...++.++|+..+++.+... |.+..++..+...
T Consensus 186 -----~~~~~~~~~l~~~~~~~~a~~~l~~al~~~--------------------------------P~~~~~~~~la~~ 228 (287)
T 3qou_A 186 -----YQGLVAQIELLXQAADTPEIQQLQQQVAEN--------------------------------PEDAALATQLALQ 228 (287)
T ss_dssp -----HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC--------------------------------TTCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHhhcccCccHHHHHHHHhcC--------------------------------CccHHHHHHHHHH
Confidence 111222222333455555666665555433 4555777788888
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
|...|++++|+..|.++.+..... +...+..++..+...|+.++|...|++..
T Consensus 229 l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 229 LHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 888999999999999888854322 26678888999999999988888887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.8e-07 Score=74.62 Aligned_cols=128 Identities=14% Similarity=0.110 Sum_probs=67.8
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
+..++..+...|++++|+.+++++.+... .+...+..+...+...|++++|...++++...+
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~----------------- 65 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------- 65 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-----------------
Confidence 44555566666666666666666555322 234455555555555666666666555554321
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
+.+...+..+...+...|++++|.+.++.+... .+.+...+..+...+...|++++|.
T Consensus 66 -----------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~ 123 (136)
T 2fo7_A 66 -----------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPRSAEAWYNLGNAYYKQGDYDEAI 123 (136)
T ss_dssp -----------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred -----------------CCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHccHHHHH
Confidence 123344445555555556666666666555542 1223444555555555555555555
Q ss_pred HHHHHHHH
Q 006303 384 KVKEDMLS 391 (651)
Q Consensus 384 ~~~~~m~~ 391 (651)
..++++..
T Consensus 124 ~~~~~~~~ 131 (136)
T 2fo7_A 124 EYYQKALE 131 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 55555543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.5e-06 Score=80.01 Aligned_cols=180 Identities=9% Similarity=-0.029 Sum_probs=101.3
Q ss_pred hHHHHHHHHHHhhcc-hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCC--ChHHHHHHhhhC----CCCCccHHHH
Q 006303 155 FKLLKNECQRLLDSG-EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP--DVNLAIRYACIV----PRADILFCNF 227 (651)
Q Consensus 155 ~~~l~~~~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~----~~~~~~~~~l 227 (651)
+..+...+....+.| ..++|+..++.++..+ |...++|..-...+...+ ++++++++++.+ |.+..+|+.-
T Consensus 32 y~~~~~~~~a~~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R 109 (306)
T 3dra_A 32 YKQIMGLLLALMKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYR 109 (306)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 333333333333334 3468999999988855 778788887777777777 777777665543 5666666654
Q ss_pred HHHH----hhc---CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH--HHHHHHHHHHhCCCcccHHHHHHHH
Q 006303 228 VREF----GKK---RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM--KSRAIYEDLRSQNVTLNIYVFNSLM 298 (651)
Q Consensus 228 ~~~~----~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~g~~~~~~~~~~ll 298 (651)
...+ ... +++++++.+++.+.+... .+..+|+.-.-++.+.|.++ ++++.++.+.+..+. |...|+...
T Consensus 110 ~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p-kny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~ 187 (306)
T 3dra_A 110 QLIIGQIMELNNNDFDPYREFDILEAMLSSDP-KNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRF 187 (306)
T ss_dssp HHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHHHHHHHHhccccCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHH
Confidence 4443 333 567777777777776432 36666766666666666666 666666666655332 333443322
Q ss_pred Hhhc--CC------hHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 299 NVNA--HD------LKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 299 ~~~~--~~------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
.... +. ++++++.++++.... +-|...|+.+-..+.+.|+
T Consensus 188 ~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 188 FLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTC
T ss_pred HHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCC
Confidence 2211 11 344444444444432 2244444444444444444
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.77 E-value=4.3e-07 Score=81.04 Aligned_cols=112 Identities=17% Similarity=0.138 Sum_probs=60.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
...+......+...|++++|+..|++.... .|+. ..|... .... ..........
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~-----~~~~--------------~~~~~~~~~~ 58 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWT-----NVDK--------------NSEISSKLAT 58 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHH-----HSCT--------------TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHh-----hhcc--------------hhhhhHHHHH
Confidence 334444555666777777777777777662 3332 223220 0000 0000111122
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
.+..++.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...|++...
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666666666777776666666654 33555666666666666777766666666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.75 E-value=5.6e-08 Score=103.83 Aligned_cols=168 Identities=12% Similarity=0.006 Sum_probs=111.5
Q ss_pred hccCChHHHHHHHHHHH--------HhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccch
Q 006303 82 AKDGRLEEFAMIVESVV--------VSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 82 ~~~g~~~~A~~~~~~~~--------~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
...|++++|++.|++++ +. .|+. ..++..++..+...|++++|+..|+++.+. .|+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~------~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~---- 467 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD--FSES------VELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRW---- 467 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C--CTTC------SHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCH----
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc--cccc------hhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchH----
Confidence 67899999999999998 44 5652 445566778899999999999999999984 44332
Q ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHH
Q 006303 154 GFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVR 229 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~ 229 (651)
..+......+...|++++|++.|++.++.. |.+...+..++.++.+.|++++ .+.|+++ |.+..++..+..
T Consensus 468 --~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~ 542 (681)
T 2pzi_A 468 --RLVWYRAVAELLTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLAR 542 (681)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHH
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHH
Confidence 223333334556899999999999998855 6666666666666666666666 5555442 445566666666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcC
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICG 270 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g 270 (651)
+|.+.|++++|++.|++..+ ..|+ ..++..+..++...+
T Consensus 543 ~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 543 ARSAEGDRVGAVRTLDEVPP--TSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHTTCHHHHHHHHHTSCT--TSTTHHHHHHHHHHHTC---
T ss_pred HHHHcCCHHHHHHHHHhhcc--cCcccHHHHHHHHHHHHccC
Confidence 66666666666666666655 2332 445555555554433
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.74 E-value=1.4e-07 Score=100.64 Aligned_cols=173 Identities=13% Similarity=-0.025 Sum_probs=118.7
Q ss_pred hhcCCHHHHHHHHHHHH--------hcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 232 GKKRDLVSALRAYDASK--------KHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
...|++++|++.+++.. +. .+.+...+..+...+...|++++|++.|++..+..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~----------------- 463 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERV----------------- 463 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-----------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-----------------
Confidence 67788999999888887 32 12356678888888888888888888888877642
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMAL 383 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 383 (651)
+.+...|..+..++...|++++|.+.|+++.++ .+.+...|..+..+|.+.|++++ +
T Consensus 464 -----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~~~~~lg~~~~~~g~~~~-~ 520 (681)
T 2pzi_A 464 -----------------GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT-----FPGELAPKLALAATAELAGNTDE-H 520 (681)
T ss_dssp -----------------CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----STTCSHHHHHHHHHHHHHTCCCT-T
T ss_pred -----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCChHH-H
Confidence 235566777777777777777777777777763 13345667777777777777777 7
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCC
Q 006303 384 KVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQACVEACQ 448 (651)
Q Consensus 384 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~g~ 448 (651)
..|++..+... -+...|..+..++.+.|++++|...|+++.+. .|+ ...+..+..++...++
T Consensus 521 ~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 521 KFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp CHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred HHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence 77777776542 25667777777777778888887777777654 333 3455555556544333
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.3e-07 Score=81.83 Aligned_cols=158 Identities=8% Similarity=-0.040 Sum_probs=83.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV- 300 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~- 300 (651)
..+..+...+.+.|++++|+..|++..+... .+...+..+..++...|++++|+..|+....... +...+......
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHH
Confidence 4455667777888888888888887765321 2566788888888888888888888887765422 22211111000
Q ss_pred h-c-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHHHHHc
Q 006303 301 N-A-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVKVFAD 375 (651)
Q Consensus 301 ~-~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 375 (651)
. . +....+...+++..+.. +.+...+..+...+...|++++|...|+++.+ ..|+ ...+..+...+..
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~------~~p~~~~~~a~~~l~~~~~~ 156 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILK------VNLGAQDGEVKKTFMDILSA 156 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT------TCTTTTTTHHHHHHHHHHHH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH------hCcccChHHHHHHHHHHHHH
Confidence 0 0 11122344444443322 12344444555555555555555555555443 1222 2344444555555
Q ss_pred ccCHHHHHHHHHHH
Q 006303 376 AKWWQMALKVKEDM 389 (651)
Q Consensus 376 ~~~~~~a~~~~~~m 389 (651)
.|+.++|...|++.
T Consensus 157 ~g~~~~A~~~y~~a 170 (176)
T 2r5s_A 157 LGQGNAIASKYRRQ 170 (176)
T ss_dssp HCSSCHHHHHHHHH
T ss_pred hCCCCcHHHHHHHH
Confidence 55555555554443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.71 E-value=6e-05 Score=76.63 Aligned_cols=203 Identities=9% Similarity=-0.045 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 341 VLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHL 420 (651)
Q Consensus 341 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 420 (651)
+.+..+|+++... .+.+...|...+.-+.+.|+.+.|..++++.... +.+...|.. |....+.++.
T Consensus 196 ~Rv~~~ye~al~~-----~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~--- 261 (493)
T 2uy1_A 196 SRMHFIHNYILDS-----FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAV--- 261 (493)
T ss_dssp HHHHHHHHHHHHH-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHH---
T ss_pred HHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHH---
Confidence 3456677777653 3455677887888888888888888888888876 223222221 2221111111
Q ss_pred HHHHHHcC---------C---CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccc
Q 006303 421 FEEMLQAG---------C---EPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQ 488 (651)
Q Consensus 421 ~~~~~~~~---------~---~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 488 (651)
++.+.+.- . ......|...+....+.+..+.|..+|+.. ....
T Consensus 262 ~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~~------------------------ 316 (493)
T 2uy1_A 262 YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNEG------------------------ 316 (493)
T ss_dssp HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTSC------------------------
T ss_pred HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCCC------------------------
Confidence 22222210 0 011235666666666778889999999876 2100
Q ss_pred cccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh-cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHH
Q 006303 489 SITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT-DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGA 567 (651)
Q Consensus 489 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 567 (651)
.........+.+....+ +.+.|..+|+...+.- .-+...+...++...+.|+.+.|
T Consensus 317 ----------------------~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 317 ----------------------VGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp ----------------------CCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------------CChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 01122222233443343 6889999999888753 22345566677777788999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 568 LQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 568 ~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..+|+++. .....|...+.--...|+.+.+.++++++.
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 99999873 257778888877777899999988888876
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.69 E-value=4.8e-07 Score=86.44 Aligned_cols=60 Identities=8% Similarity=0.011 Sum_probs=32.8
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC---C--cHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSS---P--NMYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
++..+...|.. |++++|+..|++..+.... + ...+++.+...|.+.|++++|+..|++..
T Consensus 118 ~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 118 ALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44555666666 6666666666655542100 0 13345555666666666666666665554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.67 E-value=1.4e-06 Score=78.80 Aligned_cols=204 Identities=10% Similarity=0.009 Sum_probs=112.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHH--HHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIY--VFNSL 297 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~--~~~~l 297 (651)
..+..++..+.+.|++++|+..|+++.+.... | ...++..+..+|.+.|++++|+..|+++.+........ .+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 45566777888899999999999998875432 1 13577888889999999999999999988764321111 11111
Q ss_pred HHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH-HHHHHHHHHHHcc
Q 006303 298 MNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV-FTYSTIVKVFADA 376 (651)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 376 (651)
-.++.. +.. .....|..+...+...|++++|...|+.+.+. .|+. ..+.......
T Consensus 85 g~~~~~-----------~~~----~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~------~P~~~~a~~a~~~l~--- 140 (225)
T 2yhc_A 85 GLTNMA-----------LDD----SALQGFFGVDRSDRDPQQARAAFSDFSKLVRG------YPNSQYTTDATKRLV--- 140 (225)
T ss_dssp HHHHHH-----------HHC------------------CCHHHHHHHHHHHHHHTT------CTTCTTHHHHHHHHH---
T ss_pred HHHHHh-----------hhh----hhhhhhhccchhhcCcHHHHHHHHHHHHHHHH------CcCChhHHHHHHHHH---
Confidence 111100 000 00011222333444567788888888888763 2332 2222111100
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHH
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN--SQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
.+...+ ......+...+.+.|++++|...|+++.+...... ...+..+..+|.+.|++++|.+
T Consensus 141 -------~~~~~~--------~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~ 205 (225)
T 2yhc_A 141 -------FLKDRL--------AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEK 205 (225)
T ss_dssp -------HHHHHH--------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred -------HHHHHH--------HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHH
Confidence 000000 01122455667777778888888877776631111 2356667777777788888877
Q ss_pred HHHHhhhccc
Q 006303 455 LFRSWTLSKT 464 (651)
Q Consensus 455 ~~~~~~~~~~ 464 (651)
.++.+....+
T Consensus 206 ~~~~l~~~~~ 215 (225)
T 2yhc_A 206 VAKIIAANSS 215 (225)
T ss_dssp HHHHHHHCCS
T ss_pred HHHHHHhhCC
Confidence 7776665543
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.2e-07 Score=84.58 Aligned_cols=163 Identities=12% Similarity=0.009 Sum_probs=104.7
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
|.+...+..+...+.+.|++++|+..|++..+... -+...+..+...+...|++++|...++.+.... |+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSN-QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence 34445666778888888999999999998887432 256788888888999999999999998876652 333222211
Q ss_pred HHh---hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---HHHHHHHHH
Q 006303 298 MNV---NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---VFTYSTIVK 371 (651)
Q Consensus 298 l~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---~~~~~~l~~ 371 (651)
... ..++.+.|...+++..... +.+...+..+...+...|++++|...|+++.+. .|+ ...+..++.
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~------~p~~~~~~a~~~l~~ 263 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRX------DLTAADGQTRXTFQE 263 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTGGGGHHHHHHHH
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------ccccccchHHHHHHH
Confidence 111 1134555566666655543 335566666666777777777777777666652 222 445666666
Q ss_pred HHHcccCHHHHHHHHHHHH
Q 006303 372 VFADAKWWQMALKVKEDML 390 (651)
Q Consensus 372 ~~~~~~~~~~a~~~~~~m~ 390 (651)
.|...|+.++|...|++..
T Consensus 264 ~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 264 ILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHCTTCHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHH
Confidence 6666666666666665543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=2.2e-07 Score=77.88 Aligned_cols=53 Identities=8% Similarity=-0.058 Sum_probs=23.9
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRS 284 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 284 (651)
.+...|++++|+..++..... .| +...+..+...|.+.|++++|++.|++..+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~ 59 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN 59 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 334445555555555544431 12 223344444555555555555555554443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.4e-06 Score=74.62 Aligned_cols=175 Identities=15% Similarity=0.010 Sum_probs=101.8
Q ss_pred HHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC----CHHHHH
Q 006303 343 AQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAG----LVEQAM 418 (651)
Q Consensus 343 a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g----~~~~a~ 418 (651)
|.+.|++..+ .-+...+..+...|...+++++|+..|++..+.| +...+..|...|.. + +.++|.
T Consensus 5 A~~~~~~aa~-------~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~ 73 (212)
T 3rjv_A 5 PGSQYQQQAE-------AGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQAR 73 (212)
T ss_dssp TTHHHHHHHH-------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHH
T ss_pred HHHHHHHHHH-------CCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHH
Confidence 4455555543 1355566666666666666666666666666654 44555555555555 4 666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCC
Q 006303 419 HLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTP 494 (651)
Q Consensus 419 ~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (651)
++|++..+.+ +...+..|...|.. .+++++|++.|+
T Consensus 74 ~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~------------------------------------- 113 (212)
T 3rjv_A 74 QLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQ------------------------------------- 113 (212)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHH-------------------------------------
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHH-------------------------------------
Confidence 6666665543 34444455555443 444455554444
Q ss_pred CccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhc----CCChHHHHH
Q 006303 495 NFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLS-PNHISWTILIDACGG----SGNVEGALQ 569 (651)
Q Consensus 495 ~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~-p~~~~~~~li~~~~~----~g~~~~A~~ 569 (651)
+..+.|.. .+...+..|...|.. .+++++|..
T Consensus 114 -------------------------------------------~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 114 -------------------------------------------DAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp -------------------------------------------HHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred -------------------------------------------HHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 44433211 014555566666665 667788888
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 006303 570 ILKIMREDGMSPDVVAYTTAIKVCVRS-K-----RLKQAFSLFEEMKHYQ 613 (651)
Q Consensus 570 ~~~~~~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g 613 (651)
+|++..+. ..+...+..|...|... | +.++|.++|++..+.|
T Consensus 151 ~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 88887764 23444566666666543 2 7788888887777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-06 Score=91.60 Aligned_cols=152 Identities=8% Similarity=-0.090 Sum_probs=93.4
Q ss_pred cCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 006303 269 CGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEI 346 (651)
Q Consensus 269 ~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 346 (651)
.|++++|++.|++..+.... +...+..+-..+ .|++++|.+.|++..+.. +.+...+..+...|...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 36778888888877665321 334444444433 377888888888877653 23566777777888888888888888
Q ss_pred HHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHH
Q 006303 347 YGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA---GLVEQAMHLFEE 423 (651)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---g~~~~a~~~~~~ 423 (651)
|++..+. .+.+...+..+..+|.+.|++++|.+.|++..+... .+...+..+..++... |+.++|.+.+++
T Consensus 80 ~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~ 153 (568)
T 2vsy_A 80 LQQASDA-----APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRA 153 (568)
T ss_dssp HHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred HHHHHhc-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8877764 233566777778888888888888888888776542 3566777777777777 888888888888
Q ss_pred HHHcC
Q 006303 424 MLQAG 428 (651)
Q Consensus 424 ~~~~~ 428 (651)
..+.+
T Consensus 154 al~~~ 158 (568)
T 2vsy_A 154 AVAQG 158 (568)
T ss_dssp HHHHT
T ss_pred HHhcC
Confidence 77765
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.59 E-value=5.5e-06 Score=73.98 Aligned_cols=141 Identities=14% Similarity=0.056 Sum_probs=109.9
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc----CHHHH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK----WWQMA 382 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a 382 (651)
+|++.|++..+.| ++..+..|...|...+++++|.+.|++..+. -+...+..|...|.. + ++++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-------g~~~a~~~lg~~y~~-~g~~~~~~~A 72 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-------GDGDALALLAQLKIR-NPQQADYPQA 72 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHTTS-STTSCCHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHc-CCCCCCHHHH
Confidence 4667777777754 7788888888998999999999999998762 366778888888887 6 89999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCChhHHH
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCE-PNSQCCNILLQACVE----ACQFDRAF 453 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~ll~~~~~----~g~~~~a~ 453 (651)
+..|++..+.| +...+..|...|.. .+++++|+.+|++..+.+.. ..+..+..|...|.. .+++++|+
T Consensus 73 ~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~ 149 (212)
T 3rjv_A 73 RQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKAS 149 (212)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHH
T ss_pred HHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 99999998765 66778888888877 78999999999999877521 125677777777777 66777777
Q ss_pred HHHHHhhh
Q 006303 454 RLFRSWTL 461 (651)
Q Consensus 454 ~~~~~~~~ 461 (651)
..|++...
T Consensus 150 ~~~~~A~~ 157 (212)
T 3rjv_A 150 EYFKGSSS 157 (212)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766543
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.59 E-value=5.1e-07 Score=75.63 Aligned_cols=119 Identities=7% Similarity=-0.097 Sum_probs=89.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...|.+.|++++|++.|++..++ -+-+..+|..+..+|...|++++|+..|++..+... -+...|.
T Consensus 30 ~~~~~~~la~~y~~~~~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 103 (150)
T 4ga2_A 30 KSIKGFYFAKLYYEAKEYDLAKKYICTYINV-----QERDPKAHRFLGLLYELEENTDKAVECYRRSVELNP-TQKDLVL 103 (150)
T ss_dssp HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCC-CCHHHHH
Confidence 3455667888888999999999999988874 244677888888899999999999999988887643 2677888
Q ss_pred HHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006303 403 SLINACANAGLVEQAMHL-FEEMLQAGCEPNSQCCNILLQACVEACQ 448 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 448 (651)
.+...|.+.|+.+++.+. +++..+.. +-++.+|......+...|+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 888888888888766554 57777764 4466677766666665553
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.59 E-value=8.2e-07 Score=84.80 Aligned_cols=183 Identities=13% Similarity=0.046 Sum_probs=111.6
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL 149 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~ 149 (651)
....|...+..|...|++++|+..|++.+... +..-.......++..++..|...|++++|+..|++..+.-.....
T Consensus 35 A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~- 111 (307)
T 2ifu_A 35 AASEYAKAAVAFKNAKQLEQAKDAYLQEAEAH--ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT- 111 (307)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC-
Confidence 46678888889999999999999999988762 111001113556778888899999999999999998774111100
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVR 229 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~ 229 (651)
.......+.+....+.. |++++|+..|++.+... +.. ++... ...++..+..
T Consensus 112 -~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~--~~~--------------~~~~~----------~~~~~~~lg~ 163 (307)
T 2ifu_A 112 -PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF--ENE--------------ERLRQ----------AAELIGKASR 163 (307)
T ss_dssp -HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH--HHT--------------TCHHH----------HHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH--HhC--------------CChhH----------HHHHHHHHHH
Confidence 11123344555556666 88899988888876532 110 00000 0134555666
Q ss_pred HHhhcCCHHHHHHHHHHHHhcC----CCCc-HHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 230 EFGKKRDLVSALRAYDASKKHL----SSPN-MYICRTIIDVCGICGDYMKSRAIYEDLR 283 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 283 (651)
.|.+.|++++|+..|++..+.. ..+. ...+..+..++...|++++|...|++..
T Consensus 164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 6666666666666666655421 1011 1245555555666667777776666665
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.57 E-value=8.5e-05 Score=69.62 Aligned_cols=217 Identities=9% Similarity=-0.004 Sum_probs=149.7
Q ss_pred CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----Hhc-
Q 006303 339 NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK--WWQMALKVKEDMLSAGVTPNTITWSSLINAC----ANA- 411 (651)
Q Consensus 339 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~- 411 (651)
..++|+++++.+..+ -+-+...|+.--.++...| +++++++.++.++....+ +..+|+.-...+ ...
T Consensus 48 ~s~~aL~~t~~~L~~-----nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~ 121 (306)
T 3dra_A 48 YSERALHITELGINE-----LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNN 121 (306)
T ss_dssp CSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHH-----CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcc
Confidence 345788888877764 1334455777777777777 888888888888776433 455555544444 444
Q ss_pred --CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--HHHHHHHHhhhcccccccccccCCchhhhhhhhhhcc
Q 006303 412 --GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD--RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDK 487 (651)
Q Consensus 412 --g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 487 (651)
+++++++.+++++.+.. +-+...|+.-..++.+.|.++ ++++.++++.+.+
T Consensus 122 ~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d------------------------ 176 (306)
T 3dra_A 122 NDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD------------------------ 176 (306)
T ss_dssp TCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC------------------------
T ss_pred ccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC------------------------
Confidence 67888888888888765 556677777777777778777 8888888877653
Q ss_pred ccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hc------HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 006303 488 QSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TD------YYRVKALMNEMRTVGLSPNHISWTILIDACG 559 (651)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~------~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~ 559 (651)
..|...|+.-...+. +. ++++.+.++.++...+ -|...|+-+...+.
T Consensus 177 ------------------------~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~ 231 (306)
T 3dra_A 177 ------------------------LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHE 231 (306)
T ss_dssp ------------------------TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHH
T ss_pred ------------------------CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHH
Confidence 234444443333222 12 6778888888887643 37788888888888
Q ss_pred cCCChH-HHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 560 GSGNVE-GALQILKIMREDG--MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 560 ~~g~~~-~A~~~~~~~~~~~--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
+.|+.. .+..+.+++.+.+ -..+...+..+...|.+.|+.++|.++++.+.+
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 232 RFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888744 4555666665432 134778888999999999999999999999975
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=1.8e-06 Score=90.51 Aligned_cols=149 Identities=9% Similarity=-0.038 Sum_probs=95.7
Q ss_pred CChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHH
Q 006303 205 PDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYE 280 (651)
Q Consensus 205 ~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 280 (651)
|++++|...+++. |.+..++..+...|.+.|++++|++.|++..+... .+..++..+...|...|++++|.+.|+
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 4555555555443 33345555566666666666666666666555321 234555555555666666666666555
Q ss_pred HHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 281 DLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 281 ~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
+..+. . +.+...+..+..++...|++++|.+.|++..+. .+
T Consensus 82 ~al~~---------------------------------~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-----~p 122 (568)
T 2vsy_A 82 QASDA---------------------------------A-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL-----LP 122 (568)
T ss_dssp HHHHH---------------------------------C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CT
T ss_pred HHHhc---------------------------------C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CC
Confidence 55433 2 336789999999999999999999999999874 23
Q ss_pred ccHHHHHHHHHHHHcc---cCHHHHHHHHHHHHHCC
Q 006303 361 LDVFTYSTIVKVFADA---KWWQMALKVKEDMLSAG 393 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~---~~~~~a~~~~~~m~~~~ 393 (651)
.+...+..+...+... |++++|.+.+++..+.+
T Consensus 123 ~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 123 EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 4577889999999999 99999999999998865
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.54 E-value=0.0012 Score=67.01 Aligned_cols=348 Identities=9% Similarity=-0.029 Sum_probs=199.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC-HHHHHHHHHHHHhC-CCc-ccHHHHHHHHHhhc------CCh
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD-YMKSRAIYEDLRSQ-NVT-LNIYVFNSLMNVNA------HDL 305 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~-g~~-~~~~~~~~ll~~~~------~~~ 305 (651)
|+++.+..+|+..... .|+...|...+....+.++ .+....+|+..... |.. .+...|...+.... ++.
T Consensus 28 ~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 7788888888888773 4688888888877666653 35566677766553 433 35677777776533 356
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-------------hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACC-------------LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV 372 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 372 (651)
+.+..+|++........-...|......-. ..+.+..|..+++.+...... .+...|...+.-
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~----~s~~~W~~y~~~ 181 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRG----WSVKNAARLIDL 181 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhh----ccHHHHHHHHHH
Confidence 678888888876321111112221111100 112233444555544432110 133355554443
Q ss_pred HHccc-------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 373 FADAK-------WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 373 ~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
-...+ ..+.+..+|++++... +.+...|...+..+.+.|+.+.|..++++.... +.+...+. .|..
T Consensus 182 E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~y~~ 254 (493)
T 2uy1_A 182 EMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----YYGL 254 (493)
T ss_dssp HHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----HHHH
T ss_pred HhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----HHHh
Confidence 22211 1345677888888753 446778888888888899999999999999887 33332222 2333
Q ss_pred cCChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH
Q 006303 446 ACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC 525 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~ 525 (651)
....++. ++.+....... ...... . . ........|...+...
T Consensus 255 ~~e~~~~---~~~l~~~~~~~----------------~~~~~~-----------------~-~-~~~~~~~lw~~y~~~~ 296 (493)
T 2uy1_A 255 VMDEEAV---YGDLKRKYSMG----------------EAESAE-----------------K-V-FSKELDLLRINHLNYV 296 (493)
T ss_dssp HTTCTHH---HHHHHHHTC---------------------------------------------CHHHHHHHHHHHHHHH
T ss_pred hcchhHH---HHHHHHHHHhh----------------ccchhh-----------------h-h-cccccHHHHHHHHHHH
Confidence 2222222 22222110000 000000 0 0 0011123454445544
Q ss_pred h--hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcC-CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006303 526 C--TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGS-GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 526 ~--~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~-g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A 602 (651)
. ++.+.|..+|+.+ +. ...+..+|......-... ++.+.|..+|+...+.. .-++..|...++-..+.|+.+.|
T Consensus 297 ~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~a 373 (493)
T 2uy1_A 297 LKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENA 373 (493)
T ss_dssp HHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 2 3688999999999 32 122444554322222222 36999999999998852 22456677788888889999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSRYGSLHEVQQCL 641 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 641 (651)
..+|+++. -....|...+.-=...|+.+.++.++
T Consensus 374 R~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~ 407 (493)
T 2uy1_A 374 RALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELV 407 (493)
T ss_dssp HHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999983 25788888888778889988877733
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-06 Score=78.75 Aligned_cols=178 Identities=11% Similarity=-0.003 Sum_probs=98.8
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDG 152 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~ 152 (651)
.+...+..+...|++++|+..++..+.......... .....+..++..+...|++++|+..+++..+...... ...
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~--~~~ 152 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ--QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI--DVY 152 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHH--HHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS--CTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHH--HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC--chH
Confidence 334445555666666666666666555422111110 1122223344445556666666666666654311110 011
Q ss_pred hhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCC----ccHHHHH
Q 006303 153 SGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRAD----ILFCNFV 228 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~l~ 228 (651)
.....+...+..+...|++++|+..|++.+... ...+.+. .+++.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~-----------------------------~~~~~~~~~~~~~~~nlg 203 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQL-----------------------------EALHDNEEFDVKVRYNHA 203 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------------------HHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----------------------------HhcCccccchHHHHHhHH
Confidence 112233333444445566666666665554210 0111111 4677889
Q ss_pred HHHhhcCCHHHHHHHHHHHHhcC----CCC-cHHhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 006303 229 REFGKKRDLVSALRAYDASKKHL----SSP-NMYICRTIIDVCGICGDYMKS-RAIYEDLR 283 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~ 283 (651)
..|.+.|++++|+..+++..+.. ... -..+|..+..+|.+.|++++| ...+++..
T Consensus 204 ~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 204 KALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 99999999999999999876531 111 156788999999999999999 77677654
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-05 Score=71.14 Aligned_cols=129 Identities=10% Similarity=0.044 Sum_probs=91.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH----HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----HH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV----FTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN----TI 399 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~ 399 (651)
..+..+...|++++|.+++++..... . ..++. ..+..+...+...+++++|+..++++...... ++ ..
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~--~-~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKE--E-YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC--C-CCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccc--c-CChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 34667788899999999999887621 1 12232 13345667777788999999999998874222 22 23
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQA-----GCEPN-SQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~-----~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
+++.+...|...|++++|..+|+++.+. +..+. ..++..+..+|.+.|++++|...+++..
T Consensus 157 ~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 6888888999999999999999988742 11122 2367778888889999999988887654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.49 E-value=6.1e-06 Score=66.45 Aligned_cols=109 Identities=13% Similarity=0.030 Sum_probs=89.9
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+......|.+.|++++|++.|++..+. .+.+...|..+..+|.+.|++++|+..|++.++... .+...|..
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~ 86 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKR-----DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIR 86 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHH
Confidence 456778888999999999999999998874 245678899999999999999999999999988653 36788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+..++...|++++|.+.|++..+.. +-+...+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l 121 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGV 121 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHH
Confidence 9999999999999999999998874 3344444444
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.47 E-value=8.2e-06 Score=69.43 Aligned_cols=131 Identities=11% Similarity=0.048 Sum_probs=107.2
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..... +.+...+..
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 86 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYR 86 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHH
Confidence 456777888899999999999999998874 24467889999999999999999999999998764 346788999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCChhHHHHHHHHhhh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI--LLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
+..++...|++++|...|++..+.. +.+...+.. ....+.+.|++++|+..+.....
T Consensus 87 ~a~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 87 RAASNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999998875 334555533 34447788999999999987654
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=9.8e-06 Score=72.43 Aligned_cols=132 Identities=17% Similarity=0.083 Sum_probs=87.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcC
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAH 303 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 303 (651)
+..+...+...|++++|+..|++.. .|+..++..+...|...|++++|+..|++..+..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----------------- 67 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD----------------- 67 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----------------
Confidence 3455666777777777777777653 3566677777777777777777777777665431
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC----------ccc-cHHHHHHHHHH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKL-DVFTYSTIVKV 372 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~-~~~~~~~l~~~ 372 (651)
+.+...+..+..++...|++++|.+.|+.+.+...... ..| ....+..+..+
T Consensus 68 -----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 130 (213)
T 1hh8_A 68 -----------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFM 130 (213)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHH
T ss_pred -----------------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHH
Confidence 23456677777777788888888888877776321110 011 22566677777
Q ss_pred HHcccCHHHHHHHHHHHHHCC
Q 006303 373 FADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 373 ~~~~~~~~~a~~~~~~m~~~~ 393 (651)
|...|++++|...|++..+..
T Consensus 131 ~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 131 YAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHccCHHHHHHHHHHHHHcC
Confidence 777777777777777777653
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.44 E-value=0.00029 Score=66.41 Aligned_cols=134 Identities=9% Similarity=0.049 Sum_probs=94.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC---CC
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGV---TP 396 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~---~~ 396 (651)
...+...+..+...|++++|.+.++...+... ..++ ...+..+...+...|++++|+..+++...... .+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 151 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEE---YHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV 151 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC---CCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhcccc---CChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCch
Confidence 34555677788899999999999988776311 0111 12244466677788899999999998875421 11
Q ss_pred C--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC-CC--CHHHHHHHHHHHHhcCChhHHHHHHHHhh
Q 006303 397 N--TITWSSLINACANAGLVEQAMHLFEEMLQ---AGC-EP--NSQCCNILLQACVEACQFDRAFRLFRSWT 460 (651)
Q Consensus 397 ~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 460 (651)
. ..+++.+...|...|++++|..+|++..+ ... .+ ...++..+..+|.+.|++++|+..+++..
T Consensus 152 ~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 152 YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 2 45788889999999999999999998873 211 11 12577888888999999999999887654
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.1e-05 Score=65.33 Aligned_cols=120 Identities=11% Similarity=0.058 Sum_probs=99.8
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++..... +.+...+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 84 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIEL-----NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYG 84 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHH
Confidence 4567778888999999999999999998874 24467788889999999999999999999998764 33678888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
.+...+...|++++|...|++..+.. +.+...+..+..++.+.|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence 89999999999999999999998875 44667788888888877765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-05 Score=63.94 Aligned_cols=115 Identities=17% Similarity=0.172 Sum_probs=92.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
...+..+...+...|++++|.+.|+++... .+.+...+..+...+...|++++|..+++++.... +.+..++..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 82 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYN 82 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHH
Confidence 567788888899999999999999998874 23467788889999999999999999999988764 346778888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+...+...|++++|...|+++.+.. +.+...+..+..++.+
T Consensus 83 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 83 LGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence 9999999999999999999988764 3455556555555544
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.43 E-value=1.9e-06 Score=71.72 Aligned_cols=97 Identities=10% Similarity=-0.041 Sum_probs=54.7
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSL 404 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 404 (651)
..+..+...+.+.|++++|...|+++... -+.+...|..+..+|...|++++|+..|++....... +...|..+
T Consensus 37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~-----~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~l 110 (151)
T 3gyz_A 37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIY-----DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHT 110 (151)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHH
Confidence 34445555555666666666666666553 1234455555666666666666666666666554322 44555556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006303 405 INACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 405 l~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
..+|.+.|++++|...|++..+.
T Consensus 111 g~~~~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 111 GQCQLRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh
Confidence 66666666666666666665554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.41 E-value=8e-06 Score=73.03 Aligned_cols=129 Identities=10% Similarity=-0.105 Sum_probs=108.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+...|++++|.+.|++.. .++...+..+...|...|++++|+..|++..... +.+...+..+.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg 78 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--------DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRG 78 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--------CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHH
Confidence 45567778889999999999998763 4688899999999999999999999999998764 34778899999
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 406 NACANAGLVEQAMHLFEEMLQAGCE--------------P-NSQCCNILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~~~~~--------------~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.++...|++++|...|++..+.... | ....+..+..+|.+.|++++|.+.|++.....
T Consensus 79 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 79 MLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 9999999999999999999885421 1 22678888999999999999999999987664
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.38 E-value=9.3e-06 Score=65.98 Aligned_cols=120 Identities=14% Similarity=0.089 Sum_probs=96.2
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 321 MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTIT 400 (651)
Q Consensus 321 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~ 400 (651)
+.+...+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|+..+++..+.. +.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~ 86 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKR-----NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKG 86 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHH
Confidence 345678888889999999999999999998863 23467788889999999999999999999988764 336788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 401 WSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 401 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
+..+..++.+.|++++|...|++..+.. +.+...+..+..++.+.|
T Consensus 87 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 87 YTRKAAALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8889999999999999999999988764 234456666666666554
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.37 E-value=2e-05 Score=72.11 Aligned_cols=184 Identities=7% Similarity=-0.134 Sum_probs=105.8
Q ss_pred hcCCHHHHHHHHHHHHhcCCCC-cHHhHHHH-------HHHHHhcCCHHHHHHHHHHHHhCCCcccH-------------
Q 006303 233 KKRDLVSALRAYDASKKHLSSP-NMYICRTI-------IDVCGICGDYMKSRAIYEDLRSQNVTLNI------------- 291 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~g~~~~~------------- 291 (651)
..++...|.+.|.++.+. .| ....|..+ ..++.+.++..+++..+..-.+ +.|+.
T Consensus 18 ~~~d~~~A~~~F~~a~~~--dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNY--DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHh--ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccc
Confidence 578888888888888874 34 45677766 4455555555555555544433 12211
Q ss_pred ---------HHH--HHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc
Q 006303 292 ---------YVF--NSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK 360 (651)
Q Consensus 292 ---------~~~--~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 360 (651)
..+ .+.+....|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+.... .+
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~------~~ 165 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK------WP 165 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG------CS
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc------cC
Confidence 001 1111122356667776666665533 3332444455566777777777777764432 11
Q ss_pred cc---HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 361 LD---VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 361 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
++ ...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++....
T Consensus 166 d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 166 DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 23556666777777777777777777764322143 2345556666777777777777777777663
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=7.3e-05 Score=70.84 Aligned_cols=115 Identities=11% Similarity=0.048 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-------HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH
Q 006303 307 FTLEVYKNMQKLGVMADMASYNILLKACCLAGN-------TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (651)
Q Consensus 307 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (651)
++++.++++.+.. +-|...|+.....+.+.++ ++++++.+++.... .+-|...|+.+-..+.+.|+.
T Consensus 185 eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~-----~P~n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 185 SELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHL-----IPHNVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhcCCC
Confidence 4444444444433 2245555555555544443 45566666555543 234455555554444444332
Q ss_pred --------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 380 --------------------QMALKVKEDMLSAG-----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 380 --------------------~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.........+...+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 259 LVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp SGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 22222222222211 1346666777777777777777777777776543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.9e-06 Score=80.94 Aligned_cols=193 Identities=6% Similarity=-0.054 Sum_probs=120.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..|+++++. .|+ ...++..++..+...|++++|+..+++..+ ..|+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~------~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~- 72 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITR--NPL------VAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSV- 72 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCH-
Confidence 567788889999999999999999999988 565 245566778889999999999999999997 455432
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHH-hhhCCCCCccHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRY-ACIVPRADILFCNFVR 229 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~-~~~~~~~~~~~~~l~~ 229 (651)
..+......+...|++++|+..|++.+... |.+...+...+....+..+....... -...+.+..+...+..
T Consensus 73 -----~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 145 (281)
T 2c2l_A 73 -----KAHFFLGQCQLEMESYDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTR 145 (281)
T ss_dssp -----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHH
T ss_pred -----HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 233344445666899999999999987644 33321111111111111111111111 1233444444444433
Q ss_pred HHhhcCCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhc-CCHHHHHHHHHHHHhC
Q 006303 230 EFGKKRDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGIC-GDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 230 ~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~ 285 (651)
. ..|++++|++.++...+. .|+ ......+...+.+. +.+++|.++|....+.
T Consensus 146 l--~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 146 L--IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp H--HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred H--HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 2 257888888888777663 343 33334444444444 5677788888776543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.35 E-value=8.2e-06 Score=67.89 Aligned_cols=83 Identities=11% Similarity=-0.076 Sum_probs=38.7
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
|++++|...|++..... +.+...|..+..+|...|++++|+..|++...+ .+.+...|..+..+|...|++++|
T Consensus 50 g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l-----~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 50 GRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-----GKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----SSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-----CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 44555555555544442 223444444444555555555555555544442 122334444444455555555555
Q ss_pred HHHHHHHHH
Q 006303 383 LKVKEDMLS 391 (651)
Q Consensus 383 ~~~~~~m~~ 391 (651)
...|++.++
T Consensus 124 ~~~~~~al~ 132 (151)
T 3gyz_A 124 KECFELVIQ 132 (151)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555554444
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.35 E-value=2.5e-05 Score=73.15 Aligned_cols=194 Identities=9% Similarity=-0.120 Sum_probs=125.0
Q ss_pred CccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 221 DILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 221 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..+++..+..
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-------------- 68 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-------------- 68 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--------------
Confidence 35667778888889999999999998887432 267788888888999999999999888877652
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
+.+...+..+..++...|++++|...|+...++............+..+ ...+...
T Consensus 69 --------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~~~-- 124 (281)
T 2c2l_A 69 --------------------GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKKKR-- 124 (281)
T ss_dssp --------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHHHH--
T ss_pred --------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHHHH--
Confidence 2356778888899999999999999999888754222111111112111 1111111
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhc-CChhHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQ-CCNILLQACVEA-CQFDRAFRLFRS 458 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~ll~~~~~~-g~~~~a~~~~~~ 458 (651)
+..........+......+.. + ..|+.++|++.+++..+. .|+.. ....+-..+.+. +.++++.++|.+
T Consensus 125 -----~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~ 195 (281)
T 2c2l_A 125 -----WNSIEERRIHQESELHSYLTR-L-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQ 195 (281)
T ss_dssp -----HHHHHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHh
Confidence 122222333444444443333 2 268889999888887765 45443 333444444444 668889999987
Q ss_pred hhhc
Q 006303 459 WTLS 462 (651)
Q Consensus 459 ~~~~ 462 (651)
..+.
T Consensus 196 a~~~ 199 (281)
T 2c2l_A 196 VDEK 199 (281)
T ss_dssp SSCT
T ss_pred hhcc
Confidence 7654
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.33 E-value=2.3e-05 Score=63.07 Aligned_cols=98 Identities=8% Similarity=0.016 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
...+......|.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..|++.++.+ +.+...|..+..+
T Consensus 13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~ 90 (126)
T 4gco_A 13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHH
Confidence 3467788899999999999999999999875 3478899999999999999999999999999875 5577889999999
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 006303 443 CVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~ 462 (651)
|...|++++|++.|++..+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.32 E-value=3.8e-05 Score=72.59 Aligned_cols=172 Identities=9% Similarity=-0.080 Sum_probs=97.7
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCC-CcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSS-PNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
.+..+...|++++|...+++..+.... |+. ..+..+...+...|++++|+..|++........+.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~---------- 150 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGID---------- 150 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSC----------
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhccccc----------
Confidence 456677778888888888777763221 221 12334555566666777777777776653211000
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-Ccccc-HHHHHHHHHHHHcccCH
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLD-VFTYSTIVKVFADAKWW 379 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~~~~~ 379 (651)
..-...+++.+...|...|++++|...|+++.+....- ...+. ..++..+...|.+.|++
T Consensus 151 ------------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y 212 (293)
T 3u3w_A 151 ------------------VYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRY 212 (293)
T ss_dssp ------------------TTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHH
Confidence 00012246666666667777777777666665322210 12333 34666677777777777
Q ss_pred HHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHHHHHHHHH
Q 006303 380 QMALKVKEDMLSA----GVTPN-TITWSSLINACANAG-LVEQAMHLFEEMLQ 426 (651)
Q Consensus 380 ~~a~~~~~~m~~~----~~~~~-~~~~~~ll~~~~~~g-~~~~a~~~~~~~~~ 426 (651)
++|+..+++..+. +..+. ..+|..+..++.+.| ++++|.+.+++...
T Consensus 213 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 213 EESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 7777766665532 22222 456666777777777 35777777766654
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.32 E-value=9.8e-06 Score=78.21 Aligned_cols=131 Identities=12% Similarity=-0.041 Sum_probs=112.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----------------HHHHHHHHHHHHcccCHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----------------VFTYSTIVKVFADAKWWQMALKVK 386 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~~~~~~a~~~~ 386 (651)
+...+..+...+.+.|++++|...|++...+ .|+ ...|..+..+|.+.|++++|+..+
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~ 219 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW------LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESC 219 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH------hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4567888889999999999999999999884 233 478999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH-HHHHHHhhh
Q 006303 387 EDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA-FRLFRSWTL 461 (651)
Q Consensus 387 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a-~~~~~~~~~ 461 (651)
++.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|+.+++ ...|+.|..
T Consensus 220 ~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 220 NKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999875 3378899999999999999999999999999875 45677888899999999999988 556666653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.5e-05 Score=70.56 Aligned_cols=165 Identities=15% Similarity=0.001 Sum_probs=107.2
Q ss_pred hhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHH
Q 006303 232 GKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEV 311 (651)
Q Consensus 232 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~ 311 (651)
...|++++|.+.++.+.. .......++..+...+...|++++|...+++....
T Consensus 3 ~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------- 55 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQ-------------------------- 55 (203)
T ss_dssp ----CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------
T ss_pred cccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH--------------------------
Confidence 456888888885555543 12235667888888888889999988888876542
Q ss_pred HHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcc--ccHHHHHHHHHHHHcccCHHHHHHHHHH
Q 006303 312 YKNMQKLGVM-ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLK--LDVFTYSTIVKVFADAKWWQMALKVKED 388 (651)
Q Consensus 312 ~~~m~~~~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 388 (651)
+. ..+.. ....++..+...+...|++++|.+.+++.....+..... .....+..+...+...|++++|...+++
T Consensus 56 ~~---~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 132 (203)
T 3gw4_A 56 AQ---KSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEK 132 (203)
T ss_dssp HH---TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HH---HcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 10 11111 134567778888889999999999998887753322101 1234577778888888888888888887
Q ss_pred HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 389 MLSA----GVT-PNTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 389 m~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.... +.. .-..++..+...+...|++++|...+++..+
T Consensus 133 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 133 SLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 7642 111 0123456677778888888888888777654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.27 E-value=4.2e-05 Score=64.93 Aligned_cols=129 Identities=14% Similarity=-0.057 Sum_probs=91.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh
Q 006303 257 YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL 336 (651)
Q Consensus 257 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 336 (651)
..+..+...+...|++++|...|++..+.. +.+...+..+...+..
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----------------------------------~~~~~~~~~~a~~~~~ 59 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN----------------------------------PSNAIYYGNRSLAYLR 59 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----------------------------------TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------------------------CCChHHHHHHHHHHHH
Confidence 345666666777777777777777665431 2356677788888888
Q ss_pred cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHhcCCH
Q 006303 337 AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS--LINACANAGLV 414 (651)
Q Consensus 337 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--ll~~~~~~g~~ 414 (651)
.|++++|.+.+++.... .+.+...+..+..++...|++++|...|+++..... .+...+.. .+..+.+.|++
T Consensus 60 ~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~ 133 (166)
T 1a17_A 60 TECYGYALGDATRAIEL-----DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAF 133 (166)
T ss_dssp TTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh-----CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHH
Confidence 89999999988888774 244567788888888889999999999988887532 24444433 33346677888
Q ss_pred HHHHHHHHHHH
Q 006303 415 EQAMHLFEEML 425 (651)
Q Consensus 415 ~~a~~~~~~~~ 425 (651)
++|...+....
T Consensus 134 ~~A~~~~~~~~ 144 (166)
T 1a17_A 134 ERAIAGDEHKR 144 (166)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHcccchH
Confidence 88888877654
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.27 E-value=1.6e-05 Score=70.31 Aligned_cols=159 Identities=10% Similarity=-0.026 Sum_probs=114.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-cccHHHHHHHHHHHHcccCHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-KLDVFTYSTIVKVFADAKWWQM 381 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 381 (651)
|++++|.+.++.+... ......++..+...+...|++++|...+++.......... +.....+..+...|...|++++
T Consensus 6 g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 84 (203)
T 3gw4_A 6 HDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDA 84 (203)
T ss_dssp -CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred ccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 4555555533333221 1235678888899999999999999999998875433322 2234578888999999999999
Q ss_pred HHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHhcCChh
Q 006303 382 ALKVKEDMLSA----GVTP--NTITWSSLINACANAGLVEQAMHLFEEMLQAG---CEPN--SQCCNILLQACVEACQFD 450 (651)
Q Consensus 382 a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~--~~~~~~ll~~~~~~g~~~ 450 (651)
|...+++..+. +..+ ....+..+...+...|++++|...+++..+.. ..+. ..++..+..++...|+++
T Consensus 85 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 164 (203)
T 3gw4_A 85 ARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLL 164 (203)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHH
Confidence 99999887753 2111 23467888889999999999999999887531 1111 224577888899999999
Q ss_pred HHHHHHHHhhhc
Q 006303 451 RAFRLFRSWTLS 462 (651)
Q Consensus 451 ~a~~~~~~~~~~ 462 (651)
+|.+.+++....
T Consensus 165 ~A~~~~~~al~~ 176 (203)
T 3gw4_A 165 EAQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.24 E-value=3.1e-05 Score=62.40 Aligned_cols=108 Identities=15% Similarity=0.106 Sum_probs=84.7
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 397 (651)
...+..+...+.+.|++++|++.|++..++ .+.+...|..+..+|...|++++|+..+++.++... .++
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~-----~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 82 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIEL-----DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLI 82 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHH
Confidence 446777888999999999999999998875 244577888999999999999999999998876421 111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNI 438 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 438 (651)
..+|..+..++...|++++|++.|++..+. .|++.+...
T Consensus 83 a~~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~ 121 (127)
T 4gcn_A 83 AKAMSRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKK 121 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHH
Confidence 246777888899999999999999998875 466655443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=5.7e-06 Score=68.89 Aligned_cols=93 Identities=8% Similarity=-0.070 Sum_probs=41.8
Q ss_pred HHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 366 YSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 366 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+..+...+...|++++|...|++..... +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..+|..
T Consensus 24 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~ 101 (148)
T 2vgx_A 24 LYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQ 101 (148)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHH
Confidence 3344444444444444444444444332 1134444444444444444444444444444432 2233344444444444
Q ss_pred cCChhHHHHHHHHhh
Q 006303 446 ACQFDRAFRLFRSWT 460 (651)
Q Consensus 446 ~g~~~~a~~~~~~~~ 460 (651)
.|++++|...|++..
T Consensus 102 ~g~~~~A~~~~~~al 116 (148)
T 2vgx_A 102 XGELAEAESGLFLAQ 116 (148)
T ss_dssp TTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 455555544444443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.23 E-value=4.4e-05 Score=61.34 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=82.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... .+...|.
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 76 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR-----APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYI 76 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHH
Confidence 3456777888888999999999999998874 244677888899999999999999999999887643 3677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~ 427 (651)
.+..++...|++++|...|++..+.
T Consensus 77 ~lg~~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 77 RKATAQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHh
Confidence 8999999999999999999988775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.0013 Score=62.40 Aligned_cols=221 Identities=9% Similarity=0.007 Sum_probs=151.0
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWSSLINACANA-G- 412 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-g- 412 (651)
+.+..++|+++++.+..+ -+-+..+|+.--..+...| ++++++.+++.++....+ +..+|+.-...+.+. +
T Consensus 66 ~~e~se~AL~lt~~~L~~-----nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRM-----NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp TTCCSHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCS
T ss_pred hCCCCHHHHHHHHHHHHh-----CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCC
Confidence 334456888999888874 2344566777777777777 599999999999987644 778888877777776 6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh--------HHHHHHHHhhhcccccccccccCCchhhhhhhhh
Q 006303 413 LVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFD--------RAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEH 484 (651)
Q Consensus 413 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~--------~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 484 (651)
++++++++++++.+.. +-+...|+.-..++.+.|.++ ++++.++++.+.+
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d--------------------- 197 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD--------------------- 197 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC---------------------
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC---------------------
Confidence 7889999999998775 456777777666666666666 8888888887654
Q ss_pred hccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh---------cHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 006303 485 KDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT---------DYYRVKALMNEMRTVGLSPNHISWTILI 555 (651)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~---------~~~~a~~~~~~~~~~~~~p~~~~~~~li 555 (651)
.-|...|+..-..+.+ .++++.+.+++++.... -|...|+-+-
T Consensus 198 ---------------------------p~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr 249 (349)
T 3q7a_A 198 ---------------------------GRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIP-HNVSAWNYLR 249 (349)
T ss_dssp ---------------------------TTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred ---------------------------CCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHH
Confidence 3345555555444332 15678888888877532 3677787777
Q ss_pred HHHhcCCCh--------------------HHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 556 DACGGSGNV--------------------EGALQILKIMREDG-----MSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 556 ~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..+.+.|+. ........++...+ -.+....+..+...|...|+.++|.++++.+.
T Consensus 250 ~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 250 GFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 767666553 22333333332221 13577788888999999999999999999987
Q ss_pred HC
Q 006303 611 HY 612 (651)
Q Consensus 611 ~~ 612 (651)
+.
T Consensus 330 ~~ 331 (349)
T 3q7a_A 330 SE 331 (349)
T ss_dssp HT
T ss_pred hh
Confidence 53
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-05 Score=68.80 Aligned_cols=119 Identities=10% Similarity=0.118 Sum_probs=93.3
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHH-HHcccCH--
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKV-FADAKWW-- 379 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~-- 379 (651)
++++.|...+++..... +.+...+..+...|...|++++|...|+.+.... +.+...+..+..+ +...|++
T Consensus 24 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-----p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 24 QNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-----GENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp ---CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----CSCHHHHHHHHHHHHHHTTTCCC
T ss_pred cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCHHHHHHHHHHHHHhcCCcch
Confidence 45666666776665543 3467888889999999999999999999988752 3466677788888 7788998
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
++|...++++..... .+...+..+...+...|++++|...|+++.+..
T Consensus 98 ~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 98 AQTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999887642 367788888899999999999999999998864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=8.6e-06 Score=67.78 Aligned_cols=100 Identities=8% Similarity=-0.073 Sum_probs=85.1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|+..|++...... .+...+.
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~ 93 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVL-----DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPF 93 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHc-----CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHH
Confidence 4556777888899999999999999998874 245777888999999999999999999999987643 3667888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++...|++++|...|++..+..
T Consensus 94 ~lg~~~~~~g~~~~A~~~~~~al~~~ 119 (148)
T 2vgx_A 94 HAAECLLQXGELAEAESGLFLAQELI 119 (148)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 89999999999999999999988753
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.20 E-value=7.3e-05 Score=58.91 Aligned_cols=110 Identities=19% Similarity=0.070 Sum_probs=85.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|.+.|+..... .+.+...+..+...+...|++++|...+++..+.. +.+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 76 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYS 76 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHH
Confidence 3456777888888899999999999988874 23467788888888999999999999999888764 23677888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
.+..++...|++++|...+++..+.. +.+...+..+
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 112 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGL 112 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHH
Confidence 88889999999999999999888764 3344444433
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-05 Score=59.67 Aligned_cols=115 Identities=15% Similarity=0.075 Sum_probs=78.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 006303 256 MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACC 335 (651)
Q Consensus 256 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 335 (651)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~la~~~~ 54 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD----------------------------------PNNAEAWYNLGNAYY 54 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC----------------------------------cCcHHHHHHHHHHHH
Confidence 4567777777777788888887777766431 224556677777778
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN 410 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 410 (651)
..|++++|...++.+... .+.+...+..+...+...|++++|...++++.+... .+...+..+...+..
T Consensus 55 ~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 55 KQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQNLGNAKQK 123 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHh
Confidence 888888888888877763 234566777778888888888888888888776532 244555555544443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.19 E-value=4.6e-05 Score=73.45 Aligned_cols=129 Identities=9% Similarity=-0.032 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCc--------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPN--------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQNV 287 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~ 287 (651)
..+..+...|.+.|++++|+..|++..+...... ..+|..+..+|.+.|++++|+..|++..+..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 5677788889999999999999999887533211 3455555555555555555555555554331
Q ss_pred cccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHH
Q 006303 288 TLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYS 367 (651)
Q Consensus 288 ~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 367 (651)
+.+...|..+..+|...|++++|...|+++.++ .+.+...+.
T Consensus 227 ---------------------------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----~P~~~~a~~ 268 (336)
T 1p5q_A 227 ---------------------------------SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-----YPNNKAAKT 268 (336)
T ss_dssp ---------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHH
T ss_pred ---------------------------------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCCHHHHH
Confidence 124455555666666666666666666666553 123344555
Q ss_pred HHHHHHHcccCHHHH-HHHHHHH
Q 006303 368 TIVKVFADAKWWQMA-LKVKEDM 389 (651)
Q Consensus 368 ~l~~~~~~~~~~~~a-~~~~~~m 389 (651)
.+..++...|+++++ ..+|+.|
T Consensus 269 ~l~~~~~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 269 QLAVCQQRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666555 2344444
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=2e-05 Score=68.01 Aligned_cols=121 Identities=9% Similarity=0.048 Sum_probs=99.5
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCC
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINA-CANAGL 413 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~g~ 413 (651)
...|++++|...++..... .+.+...|..+...|...|++++|...|+++.... +.+...+..+..+ +...|+
T Consensus 21 ~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~ 94 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRA-----NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQ 94 (177)
T ss_dssp C-----CCCCHHHHHHHHH-----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTT
T ss_pred hhccCHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCC
Confidence 4568889999999988764 24567889999999999999999999999998764 2367788888888 778999
Q ss_pred H--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 414 V--EQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 414 ~--~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+ ++|...|+++.+.. +.+...+..+..+|...|++++|...|++....
T Consensus 95 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 95 HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 8 99999999999875 456778888999999999999999999998764
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-05 Score=61.59 Aligned_cols=115 Identities=11% Similarity=0.008 Sum_probs=69.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+...+.+.|++++|+..|++..+... .+..++..+...+...|++++|+..+++..+..
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--------------- 80 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE--------------- 80 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC---------------
Confidence 4556666677777777777777777665321 245566666666777777777777666655431
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 376 (651)
+.+...+..+..++...|++++|.+.|++..+. .+.+...+..+..++...
T Consensus 81 -------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 81 -------------------PTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL-----DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp -------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CGGGTHHHHHHHHHHHHH
T ss_pred -------------------CCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHh-----CCCchHHHHHHHHHHHHh
Confidence 224556666667777777777777777776653 122334455555544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=0.00083 Score=63.34 Aligned_cols=228 Identities=8% Similarity=-0.021 Sum_probs=131.4
Q ss_pred cchH-HHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHH
Q 006303 168 SGEV-EMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDA 246 (651)
Q Consensus 168 ~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 246 (651)
.|.+ ++|+.+++.++..+ |...++|..-...+...+.. .++ . .....+++++.+++.
T Consensus 42 ~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~---------~~~--~---------~~~~~l~~EL~~~~~ 99 (331)
T 3dss_A 42 AGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETE---------KSP--E---------ESAALVKAELGFLES 99 (331)
T ss_dssp TTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHH---------SCH--H---------HHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhccc---------ccc--h---------hhhHHHHHHHHHHHH
Confidence 3444 47899999988855 77777776554433221110 000 0 001125566667776
Q ss_pred HHhcCCCCcHHhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCcccHHHHHHHHHh--hcCC-hHHHHHHHHHHHHCCCC
Q 006303 247 SKKHLSSPNMYICRTIIDVCGICG--DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV--NAHD-LKFTLEVYKNMQKLGVM 321 (651)
Q Consensus 247 ~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~--~~~~-~~~a~~~~~~m~~~~~~ 321 (651)
+....+ .+..+|+.-..++.+.+ ++++++++++.+.+.... |...|+.--.+ ..+. .+++++.++.+.+.. +
T Consensus 100 ~L~~~P-Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p 176 (331)
T 3dss_A 100 CLRVNP-KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-F 176 (331)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-S
T ss_pred HHHhCC-CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-C
Confidence 666422 35666666666666666 367777777777665433 44444433332 2244 467777777776654 3
Q ss_pred CCHHhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcc-----------
Q 006303 322 ADMASYNILLKACCLA--------------GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADA----------- 376 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------- 376 (651)
-|...|+.....+.+. +.++++++.++..... .+-|...|+-+-..+.+.
T Consensus 177 ~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~-----~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~ 251 (331)
T 3dss_A 177 SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT-----DPNDQSAWFYHRWLLGAGSGRCELSVEKS 251 (331)
T ss_dssp CCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHSSSCGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhccCccccchHHH
Confidence 3666666665555544 3467788888877764 355667777655555554
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHHcC
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLIN-----ACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-----~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+.++++++.++++.+. .||. .|..+.. .....|..+++...+.++.+.+
T Consensus 252 ~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 252 TVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 4578888888888875 3443 2322211 2223566777777888777653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.4e-05 Score=60.18 Aligned_cols=119 Identities=13% Similarity=-0.068 Sum_probs=82.5
Q ss_pred cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 006303 255 NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKAC 334 (651)
Q Consensus 255 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 334 (651)
+...+..+...+...|++++|...|++..... +.+...+..+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~----------------------------------~~~~~~~~~~a~~~ 56 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN----------------------------------PANAVYFCNRAAAY 56 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------------------------TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC----------------------------------CCCHHHHHHHHHHH
Confidence 34556666666777777777777777665431 23556677777788
Q ss_pred HhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 006303 335 CLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL 413 (651)
Q Consensus 335 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 413 (651)
...|++++|.+.++..... .+.+...+..+...+...|++++|...|++..+... .+...+..+..++.+.|+
T Consensus 57 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 57 SKLGNYAGAVQDCERAICI-----DPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred HHhhchHHHHHHHHHHHhc-----CccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence 8888888888888887763 234466777778888888888888888888776532 256666677777666654
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.12 E-value=6.4e-05 Score=63.77 Aligned_cols=100 Identities=13% Similarity=0.054 Sum_probs=87.3
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|++.|++..+. .+.+...|..+..+|...|++++|+..|++.++... .+...|.
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 83 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI-----APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWS 83 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4667888889999999999999999999874 244678899999999999999999999999998753 3688899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..++...|++++|...|++..+..
T Consensus 84 ~lg~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 84 RLGLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999998764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.12 E-value=8.6e-05 Score=59.61 Aligned_cols=99 Identities=11% Similarity=0.050 Sum_probs=87.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...|..+...+.+.|++++|+..|++.++.. +.+...|..+..++.+.|++++|+..+++..+.. +.+...|..+..
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34567788889999999999999999999864 3378899999999999999999999999999875 456778999999
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...|++++|...|++....
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 999999999999999988764
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.11 E-value=0.00011 Score=60.88 Aligned_cols=112 Identities=10% Similarity=-0.007 Sum_probs=90.1
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc----HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD----VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN 397 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 397 (651)
.+...+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|+..+++..... +.+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~ 98 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGD 98 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCC
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccC
Confidence 3567788888999999999999999999987 3455 5778888999999999999999999988764 336
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
...+..+..++...|++++|...|++..+.. +.+...+..+..
T Consensus 99 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (148)
T 2dba_A 99 VKALYRRSQALEKLGRLDQAVLDLQRCVSLE-PKNKVFQEALRN 141 (148)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHH
Confidence 7788889999999999999999999998864 334444444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.11 E-value=2e-05 Score=66.53 Aligned_cols=149 Identities=7% Similarity=-0.113 Sum_probs=98.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|+..+++.+... +..-.......++..++..+...|++++|+..+++..+.. +....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 84 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIA--KEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLA--RQLKD 84 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCC
Confidence 5678888999999999999999999988762 2211111224566788888999999999999999987741 11100
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
.......+...+..+...|++++|+..+++........ ++.. ....++..+...
T Consensus 85 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~----------------~~~~----------~~~~~~~~la~~ 138 (164)
T 3ro3_A 85 RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL----------------KDRI----------GEGRACWSLGNA 138 (164)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT----------------TCHH----------HHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHc----------------cchH----------hHHHHHHHHHHH
Confidence 11122334444445666788888888888766421100 0000 001455667788
Q ss_pred HhhcCCHHHHHHHHHHHHh
Q 006303 231 FGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~ 249 (651)
|...|++++|.+.+++..+
T Consensus 139 ~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 139 YTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHH
Confidence 8888888888888887665
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.11 E-value=5e-05 Score=61.25 Aligned_cols=113 Identities=12% Similarity=0.102 Sum_probs=88.0
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCC--CCC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGV--TPN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~---- 397 (651)
...+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...++++..... .++
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 78 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQI 78 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHH
Confidence 456777888888999999999999988874 244677888888999999999999999998876532 122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
..++..+..++.+.|++++|...|+++.+.. |+......+..+.
T Consensus 79 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~ 122 (131)
T 1elr_A 79 AKAYARIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQAE 122 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence 6678888889999999999999999988864 5665555554443
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.10 E-value=1.6e-05 Score=70.17 Aligned_cols=28 Identities=21% Similarity=0.185 Sum_probs=18.4
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
..+..+...+.+.|++++|+..|++..+
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~ 66 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALD 66 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3455566666677777777777776665
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=60.14 Aligned_cols=98 Identities=10% Similarity=-0.028 Sum_probs=52.4
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|+..... .+.+...|..+..++...|++++|...+++..+... .+...+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~ 81 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHF 81 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh-----CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHH
Confidence 4445555555555666666666666555542 122344555555555555555555555555554431 2444555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+..++...|++++|...|++..+
T Consensus 82 ~l~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 82 FLGQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHH
Confidence 555555555555555555555544
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.07 E-value=3.9e-05 Score=59.85 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=64.8
Q ss_pred ccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC--cHHhHHH
Q 006303 188 VKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP--NMYICRT 261 (651)
Q Consensus 188 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 261 (651)
|.+...+..++..+...|++++|...++.. |.+..++..+...+...|++++|++.|++..+... . +..++..
T Consensus 3 p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~ 81 (112)
T 2kck_A 3 DQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIE-DEYNKDVWAA 81 (112)
T ss_dssp CSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSC-CTTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCc-ccchHHHHHH
Confidence 334444555555555666666665555442 44456667777777778888888888887776432 2 4667777
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHhCC
Q 006303 262 IIDVCGIC-GDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 262 l~~~~~~~-g~~~~a~~~~~~~~~~g 286 (651)
+..++... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 77778888 88888888887776653
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.07 E-value=7.4e-05 Score=65.75 Aligned_cols=135 Identities=12% Similarity=-0.044 Sum_probs=98.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-----------HHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-----------VFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
...+..+...+...|++++|.+.|++............. ...|..+..+|...|++++|+..+++.+..
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 445667788888999999999999998874211100000 267888899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 006303 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~ 460 (651)
. +.+...+..+..++...|++++|...|++..+.. +.+...+..+..++...++.+++. ..|..+.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4 3477889999999999999999999999998874 446677877888877777776665 4444443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.07 E-value=5.3e-05 Score=59.09 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=57.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC--CHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP--NTITW 401 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~ 401 (651)
...+..+...+...|++++|...|+++.+. .+.+...+..+...+...|++++|...+++..+.. +. +...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~ 79 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQL-----DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVW 79 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-----CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHH
Confidence 344555566666666666666666666553 12344555666666666666666666666666542 22 35555
Q ss_pred HHHHHHHHhc-CCHHHHHHHHHHHHHc
Q 006303 402 SSLINACANA-GLVEQAMHLFEEMLQA 427 (651)
Q Consensus 402 ~~ll~~~~~~-g~~~~a~~~~~~~~~~ 427 (651)
..+..++.+. |++++|.+.+++..+.
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhc
Confidence 5666666666 6666666666666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=4.7e-05 Score=62.80 Aligned_cols=95 Identities=14% Similarity=-0.045 Sum_probs=45.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
.+..+...+.+.|++++|...|+.+... .+.+...|..+..+|...|++++|+..|++...... .+...+..+.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg 93 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML-----DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAA 93 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHH
Confidence 3334444455555555555555555442 122344444555555555555555555555544321 1334444445
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006303 406 NACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 406 ~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.++...|++++|...|++..+
T Consensus 94 ~~~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 94 ECHLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 555555555555555555443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.07 E-value=6.5e-05 Score=61.91 Aligned_cols=100 Identities=14% Similarity=-0.004 Sum_probs=82.1
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...+..+...+.+.|++++|...|++...... .+...|..+..++.+.|++++|...|++..+.. +.++..+..+..
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 345566777888899999999999999887643 377888888889999999999999999998875 456667788888
Q ss_pred HHHhcCChhHHHHHHHHhhhcc
Q 006303 442 ACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
+|...|++++|.+.|+......
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999998887664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.0034 Score=59.15 Aligned_cols=144 Identities=10% Similarity=-0.053 Sum_probs=80.5
Q ss_pred HHHhhhhcChh-HHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHh----hcchHHHHHHHHHHHHhcCCCccccchH
Q 006303 120 IVKSIREGRID-CVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLL----DSGEVEMFVGLMEVLEEFRLPVKELDEE 194 (651)
Q Consensus 120 ~~~~~~~g~~~-~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 194 (651)
+....+.|.++ +|+.+++.++. +.|+..+....-..++....... ....+++++.+++.++... |.+..+|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~--~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW 111 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTW 111 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHH
Confidence 33345667776 89999999998 66766544333333333211100 0112678888888888755 7777777
Q ss_pred HHHHHHHhcCCC--hHHHHHHhhhC----CCCCccHHHHHHHHhhcCC-HHHHHHHHHHHHhcCCCCcHHhHHHHHHHHH
Q 006303 195 FRIVQLCVNKPD--VNLAIRYACIV----PRADILFCNFVREFGKKRD-LVSALRAYDASKKHLSSPNMYICRTIIDVCG 267 (651)
Q Consensus 195 ~~l~~~~~~~~~--~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 267 (651)
..-...+...+. +++++.+++.+ |.+..+|+.-.-.+...|. ++++++.++.+.+..+ -|..+|+.....+.
T Consensus 112 ~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p-~N~SAW~~R~~ll~ 190 (331)
T 3dss_A 112 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 190 (331)
T ss_dssp HHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
Confidence 776666655553 45555554443 4444555555444455555 3566666666555332 24445555444443
Q ss_pred h
Q 006303 268 I 268 (651)
Q Consensus 268 ~ 268 (651)
+
T Consensus 191 ~ 191 (331)
T 3dss_A 191 Q 191 (331)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00012 Score=59.75 Aligned_cols=102 Identities=10% Similarity=-0.015 Sum_probs=90.6
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...+++..+.. +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4567889999999999999999999999998864 3368899999999999999999999999999875 4567889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcc
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+|...|++++|...|++.....
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHC
Confidence 999999999999999999887654
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00021 Score=71.86 Aligned_cols=215 Identities=6% Similarity=-0.091 Sum_probs=119.7
Q ss_pred HHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHH
Q 006303 162 CQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 162 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
+..+.+.|++++|++.|.+++.......+..... +........ ...++..|+..|...|++++|.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~---------~~~~~~~~~------~~~al~~l~~~y~~~~~~~~a~ 75 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGA---------SVDDKRRNE------QETSILELGQLYVTMGAKDKLR 75 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSS---------SBCSHHHHH------HHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHH---------HHHHHHhhh------HHHHHHHHHHHHHHCCCHHHHH
Confidence 4455568999999999999887553322211000 000000000 0123455666777777777777
Q ss_pred HHHHHHHhcCCC-CcH----HhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCccc-HHHHHHHHHhh--cCChHHHH
Q 006303 242 RAYDASKKHLSS-PNM----YICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLN-IYVFNSLMNVN--AHDLKFTL 309 (651)
Q Consensus 242 ~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~-~~~~~~ll~~~--~~~~~~a~ 309 (651)
+.+..+...-.. ++. .+.+.+...+...|+++.+..++...... +..+. ..++..+...+ .|++++|.
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 155 (434)
T 4b4t_Q 76 EFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSL 155 (434)
T ss_dssp HHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHH
Confidence 766655432111 111 23333444444556777777766665432 22222 22333333332 26666776
Q ss_pred HHHHHHHHC--CC--CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc--HHHHHHHHHHHHcccCHHHH
Q 006303 310 EVYKNMQKL--GV--MA-DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD--VFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 310 ~~~~~m~~~--~~--~~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a 382 (651)
.+++++... +. .+ ...++..++..|...|++++|..++++.......-..++. ...+..+...+...|++++|
T Consensus 156 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A 235 (434)
T 4b4t_Q 156 ALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTA 235 (434)
T ss_dssp HHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHH
T ss_pred HHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHH
Confidence 666665432 11 11 2457888889999999999999999888764332211111 23566677777888899998
Q ss_pred HHHHHHHHH
Q 006303 383 LKVKEDMLS 391 (651)
Q Consensus 383 ~~~~~~m~~ 391 (651)
...|.+..+
T Consensus 236 ~~~~~~a~~ 244 (434)
T 4b4t_Q 236 FSYFFESFE 244 (434)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888777653
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00028 Score=55.40 Aligned_cols=99 Identities=13% Similarity=-0.014 Sum_probs=86.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
+...+..+...+...|++++|...|++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45567888889999999999999999998764 3378889999999999999999999999999875 456788889999
Q ss_pred HHHhcCChhHHHHHHHHhhhc
Q 006303 442 ACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 442 ~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++...|++++|.+.+++....
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHhhHHHHHHHHHHHHHc
Confidence 999999999999999987754
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00011 Score=59.09 Aligned_cols=98 Identities=8% Similarity=0.052 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 436 (651)
...+..+...+.+.|++++|+..|++.++... -+...|..+..+|.+.|++++|++.+++.++... .++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 45677889999999999999999999998753 3788899999999999999999999999887531 122 2367
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhh
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTL 461 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~ 461 (651)
..+..++...|++++|++.|++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 7788889999999999999998765
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.00 E-value=9.8e-05 Score=62.60 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=90.2
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
+.+...+..+...+...|++++|+..|++.++.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+
T Consensus 8 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 8 TPESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 3456678889999999999999999999999874 3378899999999999999999999999999885 4568889999
Q ss_pred HHHHHhcCChhHHHHHHHHhhhcc
Q 006303 440 LQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 440 l~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
..+|.+.|++++|...|++.....
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHhC
Confidence 999999999999999999988764
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=0.00057 Score=68.59 Aligned_cols=199 Identities=11% Similarity=-0.102 Sum_probs=138.0
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCc----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC-Cccc
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPN----------------MYICRTIIDVCGICGDYMKSRAIYEDLRSQN-VTLN 290 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g-~~~~ 290 (651)
...+.+.|++++|++.|..+.+...... ..++..+...|...|++++|.+.+..+...- ..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 4556778999999999998887533211 1247788999999999999999999876531 1122
Q ss_pred HH---HHHHHHHh---hcCChHHHHHHHHHHHH----CCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc
Q 006303 291 IY---VFNSLMNV---NAHDLKFTLEVYKNMQK----LGVMAD-MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL 359 (651)
Q Consensus 291 ~~---~~~~ll~~---~~~~~~~a~~~~~~m~~----~~~~~~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 359 (651)
.. .....+.. ..++.+.+..++..... .+..+. ..++..+...|...|++++|..+++++........-
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 21 22222332 22688888888887654 232232 557788899999999999999999988764322211
Q ss_pred c-ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 360 K-LDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----GVTPN--TITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 360 ~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
. .....+..++..|...|++++|..++++.... +.++. ...+..+...+...+++++|...|.+..+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 1 22457888899999999999999999887642 11111 24566667777888999999988877754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00012 Score=61.61 Aligned_cols=139 Identities=14% Similarity=0.023 Sum_probs=104.4
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC----
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN---- 397 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~---- 397 (651)
..++..+...+...|++++|...+++........ ....-...+..+...+...|++++|...+++..+.... .+
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 3467788889999999999999999988754321 11111247888899999999999999999988753111 11
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 398 TITWSSLINACANAGLVEQAMHLFEEMLQA----GCE-PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 398 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
...+..+...+...|++++|...+++..+. +.. .....+..+...|...|++++|.+.+++....
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 456778888999999999999999988754 111 11346777888899999999999999887643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00011 Score=58.46 Aligned_cols=95 Identities=9% Similarity=-0.088 Sum_probs=61.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
+..+...+.+.|++++|...|+++.+. .+.+...|..+..++...|++++|+..|++..+... -+...+..+..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~ 93 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAV 93 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 444556666777777777777777663 233556666677777777777777777777766532 25566666777
Q ss_pred HHHhcCCHHHHHHHHHHHHHc
Q 006303 407 ACANAGLVEQAMHLFEEMLQA 427 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~ 427 (651)
++.+.|++++|...|++..+.
T Consensus 94 ~~~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 94 SHTNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 777777777777777766643
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00012 Score=58.33 Aligned_cols=97 Identities=13% Similarity=0.032 Sum_probs=83.8
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACV 444 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 444 (651)
.+..+...+.+.|++++|+..|++.++.. +.+...|..+..++...|++++|+..|++..+.. +.+...+..+..+|.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45667788999999999999999999864 3378889999999999999999999999999885 446778889999999
Q ss_pred hcCChhHHHHHHHHhhhcc
Q 006303 445 EACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 445 ~~g~~~~a~~~~~~~~~~~ 463 (651)
+.|++++|+..+++.....
T Consensus 97 ~~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHHC--
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 9999999999999887543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.89 E-value=6.8e-05 Score=75.52 Aligned_cols=60 Identities=7% Similarity=0.061 Sum_probs=47.8
Q ss_pred HhhhccCChHHHHHHHHHHHHhcC---ChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 79 SKLAKDGRLEEFAMIVESVVVSEG---NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 79 ~~~~~~g~~~~A~~~~~~~~~~~~---~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
..+..+|++++|+.++++.++... .|++.. ...++++++..|..+|++++|+.++++.++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~ 379 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLY---VLRLLSIASEVLSYLQAYEEASHYARRMVD 379 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHH---HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 345678999999999999987632 223222 477789999999999999999999998776
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00022 Score=72.29 Aligned_cols=123 Identities=11% Similarity=0.074 Sum_probs=95.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.+...+.+.|++++|.+.|++..+. .+.+...|..+..+|.+.|++++|+..+++..+... .+...+..+..+|
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~ 84 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASN 84 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh-----CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 3445566789999999999999874 244578899999999999999999999999998753 3778899999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHH
Q 006303 409 ANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRLFRS 458 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~~~~ 458 (651)
.+.|++++|.+.|++..+.. +.+...+..+..+ +.+.|++++|++.+++
T Consensus 85 ~~~g~~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~~ 135 (477)
T 1wao_1 85 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEH 135 (477)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC------
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999999999999998874 2233455555555 7888999999999874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00043 Score=55.58 Aligned_cols=95 Identities=13% Similarity=-0.009 Sum_probs=77.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-H---HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC---HH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-V---FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN---TI 399 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~ 399 (651)
+..+...+...|++++|.+.|+.+.+. .|+ . ..+..+..++...|++++|...|+++...... + ..
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~ 77 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLEL------YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAG 77 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHH
Confidence 345667788899999999999998873 233 2 47778888999999999999999999876422 3 56
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+..+..++.+.|++++|...|+++.+..
T Consensus 78 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 78 GLLKLGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888899999999999999999998874
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00078 Score=55.48 Aligned_cols=100 Identities=9% Similarity=-0.057 Sum_probs=87.3
Q ss_pred cccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 006303 360 KLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPN----TITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQC 435 (651)
Q Consensus 360 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 435 (651)
+.+...+..+...+...|++++|...|++..+. .|+ ...+..+..++...|++++|...+++..+.. +.+...
T Consensus 25 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 25 ASSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 346678888999999999999999999999976 455 6788889999999999999999999998874 446778
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 436 CNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 436 ~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+..+..+|...|++++|...|++....
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888999999999999999999988754
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00028 Score=56.64 Aligned_cols=99 Identities=10% Similarity=0.097 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHH
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGC--EPN----SQCC 436 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~ 436 (651)
...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+... .++ ...+
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY 82 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence 4567888889999999999999999998764 34778899999999999999999999999987641 122 6778
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 437 NILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 437 ~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
..+..+|.+.|++++|.+.|++....
T Consensus 83 ~~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 83 ARIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 88899999999999999999988753
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00034 Score=68.20 Aligned_cols=128 Identities=12% Similarity=0.006 Sum_probs=100.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-----------CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
..+..+...+.+.|++++|++.|++..+..... ..+.+...|..+..+|.+.|++++|+..+++.++..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 303 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID 303 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC
Confidence 446778888999999999999999887621110 023346688899999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 006303 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFR 454 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 454 (651)
. .+...|..+..+|...|++++|...|++..+.. +.+...+..+..++.+.++.+++.+
T Consensus 304 p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 304 P-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred c-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 378889999999999999999999999999874 3466677777777777776665543
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.80 E-value=9.1e-05 Score=58.55 Aligned_cols=90 Identities=14% Similarity=-0.004 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVE 415 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~ 415 (651)
..|++++|+..|++..+.. ..-+.+...+..+..+|...|++++|+..|++..+.... +...+..+..++.+.|+++
T Consensus 2 ~~g~~~~A~~~~~~al~~~--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~ 78 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASG--LQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYE 78 (117)
T ss_dssp -----CCCHHHHHHHHSSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHH
T ss_pred CCCcHHHHHHHHHHHHHcC--CCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHH
Confidence 3578888888998887620 000234567888888899999999999999998876433 6778888888999999999
Q ss_pred HHHHHHHHHHHcC
Q 006303 416 QAMHLFEEMLQAG 428 (651)
Q Consensus 416 ~a~~~~~~~~~~~ 428 (651)
+|...|++..+..
T Consensus 79 ~A~~~~~~al~~~ 91 (117)
T 3k9i_A 79 QGVELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC
Confidence 9999999887763
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0002 Score=72.22 Aligned_cols=131 Identities=13% Similarity=0.087 Sum_probs=106.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc---------------HHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD---------------VFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~---------------~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
....+..+...+.+.|++++|...|++..++. +.+ ...|..+..+|.+.|++++|+..++
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-----p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~ 341 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-----EMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCD 341 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----TTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-----cccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 35577888899999999999999999998853 222 5788999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-HHHHHhh
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF-RLFRSWT 460 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~-~~~~~~~ 460 (651)
++++... .+...|..+..+|...|++++|...|+++.+.. +.+...+..+..++.+.++.+++. ..+..|.
T Consensus 342 ~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 342 KALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998753 378899999999999999999999999999864 334557888888888888887765 4455544
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00033 Score=57.56 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=57.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-------CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC-----
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-------VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA----- 392 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----- 392 (651)
..+......+.+.|++++|+..|++..++.... ..+.+...|..+..++.+.|++++|+..+++.++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 345556667778888888888888887743110 00001225666666666666666666666666553
Q ss_pred CCCC-CHHHH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 393 GVTP-NTITW----SSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 393 ~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+.| +...| .....++...|++++|+..|++..+
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 0022 23344 5555555555555555555555544
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00024 Score=71.54 Aligned_cols=137 Identities=5% Similarity=-0.070 Sum_probs=96.7
Q ss_pred HHHhhcCCHHHHHHHHHHHHhc-----CCC-C-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 229 REFGKKRDLVSALRAYDASKKH-----LSS-P-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 229 ~~~~~~g~~~~a~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
..+..+|++++|+.++++.++. |.. | ...+++.|..+|...|++++|..++++.+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL------------------ 378 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMV------------------ 378 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH------------------
Confidence 3456789999999998877653 211 2 24578889999999999999999887654
Q ss_pred cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhc--CCccccH-HHHHHHHHHHHcccC
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAK--GVLKLDV-FTYSTIVKVFADAKW 378 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~-~~~~~l~~~~~~~~~ 378 (651)
.++........+-...+++.|...|...|++++|+.++++...+.+. |.-.|++ .+.+.+..++...++
T Consensus 379 --------~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~ 450 (490)
T 3n71_A 379 --------DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM 450 (490)
T ss_dssp --------HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred --------HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence 33333333222223568899999999999999999999988765432 3223333 345566677778888
Q ss_pred HHHHHHHHHHHHH
Q 006303 379 WQMALKVKEDMLS 391 (651)
Q Consensus 379 ~~~a~~~~~~m~~ 391 (651)
+++|+.+|..+.+
T Consensus 451 ~~~ae~~~~~~~~ 463 (490)
T 3n71_A 451 FRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 8888888888764
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.78 E-value=5e-05 Score=60.10 Aligned_cols=87 Identities=8% Similarity=-0.000 Sum_probs=71.0
Q ss_pred cccCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 006303 375 DAKWWQMALKVKEDMLSAG--VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRA 452 (651)
Q Consensus 375 ~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a 452 (651)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++.+.|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 4688999999999999864 12355778899999999999999999999999885 45677888999999999999999
Q ss_pred HHHHHHhhhc
Q 006303 453 FRLFRSWTLS 462 (651)
Q Consensus 453 ~~~~~~~~~~ 462 (651)
+..+++....
T Consensus 81 ~~~~~~al~~ 90 (117)
T 3k9i_A 81 VELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999988765
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00067 Score=57.19 Aligned_cols=104 Identities=10% Similarity=0.016 Sum_probs=84.1
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC-----C--------ccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG-----V--------LKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-----~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
...+......+.+.|++++|+..|.......... . .+.+...|..+..+|.+.|++++|+..+++.+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567778888999999999999999888741100 0 02234678889999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 391 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
... +.+...|..+..++...|++++|...|++..+..
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 875 3378889999999999999999999999998874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00097 Score=53.43 Aligned_cols=98 Identities=13% Similarity=-0.013 Sum_probs=64.4
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcH---HhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNM---YICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
.+..+...+.+.|++++|+..|+.+.+.... +. .++..+..++...|++++|+..|+...+.....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---------- 72 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---------- 72 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS----------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC----------
Confidence 3455667777788888888888887764321 22 466677777778888888888877776542110
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+.....+..+..++...|++++|...|+.+..
T Consensus 73 ---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 73 ---------------------DKAAGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp ---------------------TTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00044556666777777777777777777765
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.72 E-value=4.2e-05 Score=77.59 Aligned_cols=127 Identities=13% Similarity=0.058 Sum_probs=91.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
...+..++..+...|++++|++.|+++++. .|+ ...++..++..+.+.|++++|+..+++..+. .|+.
T Consensus 6 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~--~p~------~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~-- 73 (477)
T 1wao_1 6 AEELKTQANDYFKAKDYENAIKFYSQAIEL--NPS------NAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKY-- 73 (477)
T ss_dssp HTTSSSSSSSTTTTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTC--
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCC--
Confidence 344556667778899999999999999998 665 3556677888899999999999999999984 4533
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH--HhcCCChHHHHHHhh
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL--CVNKPDVNLAIRYAC 215 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 215 (651)
...+......+...|++++|++.|++.++.. |.+...+..+..+ +.+.|++++|.+.++
T Consensus 74 ----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~--p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 74 ----IKGYYRRAASNMALGKFRAALRDYETVVKVK--PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 2233344445666899999999999998854 6666666666555 666677777777666
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.001 Score=55.95 Aligned_cols=100 Identities=17% Similarity=0.103 Sum_probs=84.2
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSA--------G---------VTPNTITWSSLINACANAGLVEQAMHLFEEM 424 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--------~---------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 424 (651)
....+......+.+.|++++|+..|.+.+.. . .+.+...|..+..+|.+.|++++|+..+++.
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3456777888999999999999999998864 1 0113467888999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 425 LQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 425 ~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
++.. +.+...|..+..+|...|++++|...|++....
T Consensus 90 l~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 9875 557788999999999999999999999988764
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=69.50 Aligned_cols=129 Identities=12% Similarity=-0.003 Sum_probs=70.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccH------------------HHHHHHHHHHHcccCHHHHHHHHH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDV------------------FTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
.+..+...+.+.|++++|...|++.... .|+. ..|..+..+|.+.|++++|+..++
T Consensus 181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~------~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~ 254 (338)
T 2if4_A 181 RRKMDGNSLFKEEKLEEAMQQYEMAIAY------MGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCN 254 (338)
T ss_dssp HHHHHHHHTCSSSCCHHHHHHHHHHHHH------SCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH------hccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3445555666666777777766666552 2332 277888889999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCChhHHHHHHHHhhhc
Q 006303 388 DMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA-CVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~ 462 (651)
+.++.. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+... ....+..+.+...|.+|...
T Consensus 255 ~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 255 IVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------------------
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 988764 3367888889999999999999999999887653 2233444444444 23345667777788777644
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00087 Score=67.59 Aligned_cols=29 Identities=10% Similarity=-0.001 Sum_probs=24.1
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhc
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKH 250 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 250 (651)
..+..+...|.+.|++++|+..|++..+.
T Consensus 269 ~~~~~~G~~~~~~g~~~~A~~~y~~Al~~ 297 (457)
T 1kt0_A 269 AIVKEKGTVYFKGGKYMQAVIQYGKIVSW 297 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 56777888888999999999999888773
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.57 E-value=0.0005 Score=66.97 Aligned_cols=124 Identities=10% Similarity=0.003 Sum_probs=82.1
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc--------------CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHH
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE--------------GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVL 136 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------------~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l 136 (651)
...+..++..+.+.|++++|+..|+++++.- ..|. ...++.+++..+.+.|++++|+..+
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~------~~~~~~nla~~~~~~g~~~~A~~~~ 296 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPV------ALSCVLNIGACKLKMSDWQGAVDSC 296 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHH------HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHH------HHHHHHHHHHHHHhccCHHHHHHHH
Confidence 4457788889999999999999999998731 1222 3455667777788888888888888
Q ss_pred HHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHH
Q 006303 137 KKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLA 210 (651)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 210 (651)
++.++ ..|+. ...+......+...|++++|+..|++.++.. |.+...+..+...+...++.+++
T Consensus 297 ~~al~--~~p~~------~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~--P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 297 LEALE--IDPSN------TKALYRRAQGWQGLKEYDQALADLKKAQEIA--PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HHHHT--TCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH--hCchh------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHHHH
Confidence 88887 34432 1223333445556788888888888877644 54544444444444444444433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.0014 Score=53.94 Aligned_cols=101 Identities=12% Similarity=-0.023 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 006303 363 VFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP------NT-----ITWSSLINACANAGLVEQAMHLFEEMLQA---- 427 (651)
Q Consensus 363 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~------~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~---- 427 (651)
...+......+...|++++|+..|++.++..... +. ..|..+..++.+.|++++|+..+++.++.
T Consensus 11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~ 90 (159)
T 2hr2_A 11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 90 (159)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence 3445667778889999999999999998753221 22 38999999999999999999999999886
Q ss_pred -CCCC-CHHHH----HHHHHHHHhcCChhHHHHHHHHhhhcc
Q 006303 428 -GCEP-NSQCC----NILLQACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 428 -~~~~-~~~~~----~~ll~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.+.| +...| .....++...|++++|+..|++..+..
T Consensus 91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 91 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1134 44577 888899999999999999999887654
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.47 E-value=0.00027 Score=68.08 Aligned_cols=144 Identities=11% Similarity=0.054 Sum_probs=79.1
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
...+...+..+...|++++|+..|++.++. .|+.. .+...++.+++...+. ..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~--------------~~~~~~~~~~~~~~l~-----------~~ 231 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDF--------------MFQLYGKYQDMALAVK-----------NP 231 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHH--------------HHTCCHHHHHHHHHHH-----------TH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccch--------------hhhhcccHHHHHHHHH-----------HH
Confidence 344566777889999999999999999874 34321 0112355555543332 12
Q ss_pred hHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHH-H
Q 006303 193 EEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDV-C 266 (651)
Q Consensus 193 ~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~-~ 266 (651)
.+..++.++.+.|++++|...+... |.+..++..+..+|...|++++|+..|++..+. .| +..++..+... .
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~ 309 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAE 309 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHH
Confidence 4667778888888888888777664 666788888899999999999999999888763 34 34455555555 2
Q ss_pred HhcCCHHHHHHHHHHHHhC
Q 006303 267 GICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 267 ~~~g~~~~a~~~~~~~~~~ 285 (651)
...+..+.+...|..|...
T Consensus 310 ~~~~~~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 310 QEKALYQKQKEMYKGIFKG 328 (338)
T ss_dssp -------------------
T ss_pred HHHHHHHHHHHHHHHhhCC
Confidence 3446677788888887655
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00028 Score=54.82 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=57.7
Q ss_pred cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 006303 362 DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-------SQ 434 (651)
Q Consensus 362 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-------~~ 434 (651)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. |+ ..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~ 79 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK 79 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence 34556666677777777777777777776653 2256667777777777777777777777777653 32 33
Q ss_pred HHHHHHHHHHhcCChhHHHHHH
Q 006303 435 CCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 435 ~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
.+..+..++...|+.+.|.+.+
T Consensus 80 ~~~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 80 LQYRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHHHhHhhhHhHH
Confidence 4444555555555555554443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0056 Score=63.21 Aligned_cols=172 Identities=7% Similarity=-0.121 Sum_probs=119.7
Q ss_pred cCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcC----------hhHHHHHHHHHHHcCCCccccccch
Q 006303 84 DGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGR----------IDCVVGVLKKLNELGVAPLELFDGS 153 (651)
Q Consensus 84 ~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~----------~~~a~~~l~~~~~~~~~~~~~~~~~ 153 (651)
....++|++.++.++.. .|+.++.... -...+...|+ ++++++.++++.+. .|...
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~------R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y---- 107 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNC------RREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSY---- 107 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHH------HHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCH----
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHH------HHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCH----
Confidence 34446889999999998 7776554222 2222334445 89999999999984 44332
Q ss_pred hhHHHHHHHHHHhhcc--hHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCC-ChHHHHHHhhhC----CCCCccHHH
Q 006303 154 GFKLLKNECQRLLDSG--EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKP-DVNLAIRYACIV----PRADILFCN 226 (651)
Q Consensus 154 ~~~~l~~~~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~----~~~~~~~~~ 226 (651)
.++..-.-.+.+.+ +++++++.++++++.. |.+..+|.....++...| .++++.+++..+ |.+..+|+.
T Consensus 108 --~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d--~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~ 183 (567)
T 1dce_A 108 --GTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHY 183 (567)
T ss_dssp --HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHH
T ss_pred --HHHHHHHHHHHHcccccHHHHHHHHHHHHhhc--cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHH
Confidence 22322222334467 6799999999999865 888889998888888888 788888887665 556677777
Q ss_pred HHHHHhhc--------------CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHH
Q 006303 227 FVREFGKK--------------RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMK 274 (651)
Q Consensus 227 l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 274 (651)
....+.+. +.++++++.+++.....+ -+..+|+.+...+.+.++.++
T Consensus 184 r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P-~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 184 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP-NDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS-SCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC-CCccHHHHHHHHHhcCCCccc
Confidence 66665553 567888888888887432 367788888877777776444
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0068 Score=49.20 Aligned_cols=110 Identities=15% Similarity=-0.009 Sum_probs=69.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 379 (651)
+.++|.+.|++..+.| .++.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-------g~~~a~~~Lg~~y~~G~g~~~d~ 77 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL-------NSGNGCRFLGDFYENGKYVKKDL 77 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC-------CCHHHHHHHHHHHHcCCCCCccH
Confidence 4556666666666655 22222 555555556666677777766652 355666666666666 6677
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 428 (651)
++|+..|++..+.| +...+..|...|.. .++.++|.+.|++..+.|
T Consensus 78 ~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 78 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 77777777776654 45666666666666 667777777777776665
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00024 Score=58.28 Aligned_cols=107 Identities=7% Similarity=-0.027 Sum_probs=69.3
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.+.+++|++.++..++.. |.+...|..++.++...++++.+.... +.+++|+..|++.
T Consensus 15 ~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al--------------------~~~~eAi~~le~A 72 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAK--------------------QMIQEAITKFEEA 72 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHH--------------------HHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhH--------------------hHHHHHHHHHHHH
Confidence 588999999999998866 777777777777776665544222111 1256777777777
Q ss_pred HhcCCCC-cHHhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 248 KKHLSSP-NMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 248 ~~~~~~~-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
++. .| +..+|..+..+|...| ++++|++.|++..+. .|+...|...+..
T Consensus 73 L~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 73 LLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 663 34 4556666777766553 677777777777665 4555555555444
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.014 Score=60.28 Aligned_cols=181 Identities=10% Similarity=-0.024 Sum_probs=120.1
Q ss_pred CCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCH---HHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDY---MKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (651)
...++|++.++++.+. .| +..+|+.-..++...|+. +... ..++++++
T Consensus 43 ~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~--------------------------~~~~~eL~ 94 (567)
T 1dce_A 43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESA--------------------------ALVKAELG 94 (567)
T ss_dssp CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHH--------------------------HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhh--------------------------hhHHHHHH
Confidence 3446778888888874 34 455666665555555440 0000 01234444
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAG--NTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKE 387 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~ 387 (651)
.++.+.+.. +-+..+|..-..++.+.+ +++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++
T Consensus 95 ~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~-----d~~N~~aW~~R~~~l~~l~~~~~~el~~~~ 168 (567)
T 1dce_A 95 FLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEA-----DERNFHCWDYRRFVAAQAAVAPAEELAFTD 168 (567)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhh-----ccccccHHHHHHHHHHHcCCChHHHHHHHH
Confidence 444444432 336667777777777778 668888888888874 2456777887777777788 8888888888
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 006303 388 DMLSAGVTPNTITWSSLINACANA--------------GLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDR 451 (651)
Q Consensus 388 ~m~~~~~~~~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 451 (651)
++++..+. |...|+.....+.+. +.++++++.+++..... +-+...|...-..+.+.+..++
T Consensus 169 ~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 169 SLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp TTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 88877544 778888777776663 45789999999988875 4466677777777766666433
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0013 Score=50.82 Aligned_cols=88 Identities=13% Similarity=0.072 Sum_probs=67.6
Q ss_pred CcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-------H
Q 006303 546 PNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-------L 618 (651)
Q Consensus 546 p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~ 618 (651)
++...+..+...+...|++++|...|++..+.. +.+...|..+..+|.+.|++++|.+.+++..+. .|+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHH
Confidence 356678888899999999999999999998853 236788889999999999999999999999854 455 4
Q ss_pred HHHHHHHHHHHhcCCHHH
Q 006303 619 VTYITLLRARSRYGSLHE 636 (651)
Q Consensus 619 ~~~~~l~~~~~~~g~~~~ 636 (651)
..+..+..++...|+.+.
T Consensus 79 ~~~~~~~~~~~~~~~~~~ 96 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQI 96 (111)
T ss_dssp HHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHHhHhh
Confidence 455555555555555443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0041 Score=45.85 Aligned_cols=79 Identities=16% Similarity=0.205 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQAC 443 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~ 443 (651)
..+..+...+...|++++|+..|++..+.. +.+...+..+..++.+.|++++|...|++..+.. +.+...+..+..++
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345555555555666666666665555442 2244555555666666666666666666665543 22344444444444
Q ss_pred H
Q 006303 444 V 444 (651)
Q Consensus 444 ~ 444 (651)
.
T Consensus 88 ~ 88 (91)
T 1na3_A 88 Q 88 (91)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.023 Score=45.96 Aligned_cols=105 Identities=10% Similarity=-0.049 Sum_probs=85.5
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQA 602 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A 602 (651)
++.++|...|++..+.|. |+.. |...|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 478899999999999873 3444 7777888888999999999999864 77888888888988 8899999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 006303 603 FSLFEEMKHYQIQPNLVTYITLLRARSR----YGSLHEVQQCLA 642 (651)
Q Consensus 603 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~ 642 (651)
.++|++..+.| +......+...|.. .++.++|.+.++
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~ 121 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFE 121 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHH
Confidence 99999998875 56677778888888 788888766433
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0029 Score=49.45 Aligned_cols=78 Identities=14% Similarity=-0.065 Sum_probs=48.8
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHH
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKE 387 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 387 (651)
++..|++..+.. +.+...+..+...+...|++++|...|++.... .+.+...|..+..+|...|++++|...|+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~la~~~~~~g~~~~A~~~~~ 77 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF-----DPTYSVAWKWLGKTLQGQGDRAGARQAWE 77 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555554432 235566666777777777777777777776653 13345566666777777777777777776
Q ss_pred HHHH
Q 006303 388 DMLS 391 (651)
Q Consensus 388 ~m~~ 391 (651)
+..+
T Consensus 78 ~al~ 81 (115)
T 2kat_A 78 SGLA 81 (115)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00084 Score=66.36 Aligned_cols=95 Identities=7% Similarity=-0.136 Sum_probs=72.6
Q ss_pred ccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCccccccchhhH
Q 006303 83 KDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELFDGSGFK 156 (651)
Q Consensus 83 ~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~~~~~~~~~~ 156 (651)
..|++++|+.++++.++.. ..|++.. ...++++++..|..+|+|++|+.++++.++. -..|+ +..+..
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~---~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~---Hp~~a~ 383 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVY---MLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVY---SLNVAS 383 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSS---CHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchH---HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCC---ChHHHH
Confidence 4589999999999998753 2333322 4778899999999999999999999998765 22232 334555
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
.+.+....|...|++++|+.+|++.++
T Consensus 384 ~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 384 MWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 666777788889999999999988764
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0053 Score=45.20 Aligned_cols=83 Identities=16% Similarity=0.075 Sum_probs=65.5
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...+..+...+...|++++|...|++.... .+.+...+..+..++...|++++|...+++..+... .+...+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~ 81 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-----DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAKQ 81 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc-----CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCHHHHH
Confidence 3567778888899999999999999998874 234677888899999999999999999999887642 3566677
Q ss_pred HHHHHHHhc
Q 006303 403 SLINACANA 411 (651)
Q Consensus 403 ~ll~~~~~~ 411 (651)
.+..++.+.
T Consensus 82 ~l~~~~~~~ 90 (91)
T 1na3_A 82 NLGNAKQKQ 90 (91)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 666666544
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.15 E-value=0.0019 Score=52.96 Aligned_cols=99 Identities=13% Similarity=0.024 Sum_probs=68.4
Q ss_pred hcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH----------HHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006303 336 LAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW----------QMALKVKEDMLSAGVTPNTITWSSLI 405 (651)
Q Consensus 336 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~ll 405 (651)
+.+.+++|.+.++...++ -+.+...|..+..++...+++ ++|+..|++.++.... +...|..+.
T Consensus 14 r~~~feeA~~~~~~Ai~l-----~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG 87 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS-----NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIG 87 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHH
Confidence 445667777777777764 244566777777777766654 5888888888876433 667788888
Q ss_pred HHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 406 NACANAG-----------LVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 406 ~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
.+|.+.| ++++|++.|++.++. .|+...|...+..
T Consensus 88 ~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~~ 133 (158)
T 1zu2_A 88 NAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 8887764 788999999988886 5665555544443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0024 Score=49.94 Aligned_cols=80 Identities=18% Similarity=0.136 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006303 342 LAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLF 421 (651)
Q Consensus 342 ~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 421 (651)
++.+.|++..+. .+.+...+..+...|...|++++|+..|++..... +.+...|..+..++...|++++|...|
T Consensus 3 ~a~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~ 76 (115)
T 2kat_A 3 AITERLEAMLAQ-----GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAW 76 (115)
T ss_dssp CHHHHHHHHHTT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 466777777653 24467788899999999999999999999998764 336778889999999999999999999
Q ss_pred HHHHHc
Q 006303 422 EEMLQA 427 (651)
Q Consensus 422 ~~~~~~ 427 (651)
++..+.
T Consensus 77 ~~al~~ 82 (115)
T 2kat_A 77 ESGLAA 82 (115)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 988764
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0015 Score=64.70 Aligned_cols=101 Identities=9% Similarity=-0.009 Sum_probs=76.4
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc---CCCccccc
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL---GVAPLELF 150 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~---~~~~~~~~ 150 (651)
.+..+...|++++|+.++++.++.. ..|++.. ...++++++..|..+|+|++|+.+++++++. -..|+
T Consensus 293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~---~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~--- 366 (429)
T 3qwp_A 293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIY---QLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGS--- 366 (429)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHH---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSS---
T ss_pred HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchH---HHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCC---
Confidence 3455667899999999999998753 2333322 4778899999999999999999999998765 12222
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHh
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEE 183 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~ 183 (651)
+..+...+.+....|...|++++|+.++++.+.
T Consensus 367 Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 367 HPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 334555666777788889999999999988764
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=48.69 Aligned_cols=68 Identities=13% Similarity=-0.025 Sum_probs=56.9
Q ss_pred CCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+|+. ...+..++..+...|++++|+..|+++++. .|+. ..++..++..+...|++++|+..|++..+.
T Consensus 3 ~p~~-~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 3 DPED-PFTRYALAQEHLKHDNASRALALFEELVET--DPDY------VGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp --CC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTC------THHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CccC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 3555 778899999999999999999999999998 6652 345667788899999999999999998873
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0027 Score=48.10 Aligned_cols=67 Identities=9% Similarity=-0.017 Sum_probs=51.7
Q ss_pred CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 218 PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 218 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
|.+..++..+...|.+.|++++|+..|++..+... .+..+|..+..+|...|++++|++.|++..+.
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 44556777888888888888888888888887532 24667888888888888988888888877643
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.048 Score=51.61 Aligned_cols=163 Identities=15% Similarity=0.117 Sum_probs=91.0
Q ss_pred ChHHHHHHhhhCCCCCccHHHHHHHHh--hc---CCHHHHHHHHHHHHhcCCCCc-HHhHHHHHHHHHhcCCHHHHHHHH
Q 006303 206 DVNLAIRYACIVPRADILFCNFVREFG--KK---RDLVSALRAYDASKKHLSSPN-MYICRTIIDVCGICGDYMKSRAIY 279 (651)
Q Consensus 206 ~~~~A~~~~~~~~~~~~~~~~l~~~~~--~~---g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~ 279 (651)
...+..+.....|.+..+|...+.+.. .. .+..+|+.+|++..+ ..|+ ...|..+..+|...
T Consensus 179 ~~~e~~r~~~~~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~---------- 246 (372)
T 3ly7_A 179 PQRMQETLQKILPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVR---------- 246 (372)
T ss_dssp CHHHHHHHHHHSCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHH----------
T ss_pred hHHHHHHHhccCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHH----------
Confidence 344445555666777777777665443 22 345788888998888 3454 34555444444300
Q ss_pred HHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHH-CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC
Q 006303 280 EDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQK-LGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV 358 (651)
Q Consensus 280 ~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 358 (651)
... .+. +...... ...+.+ .... ...+.++.+|..+...+...|++++|...++++..+
T Consensus 247 ~~~--~~~--~~~~~~~--------l~~a~~---a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L----- 306 (372)
T 3ly7_A 247 HSQ--HPL--DEKQLAA--------LNTEID---NIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL----- 306 (372)
T ss_dssp HHH--SCC--CHHHHHH--------HHHHHH---HHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----
T ss_pred hcc--CCC--chhhHHH--------HHHHHH---HHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----
Confidence 000 000 0000000 011111 1111 112446667777666666668888888888877773
Q ss_pred ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006303 359 LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSS 403 (651)
Q Consensus 359 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 403 (651)
.|+...|..+...+.-.|++++|.+.|++.... .|...+|..
T Consensus 307 -n~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~~ 348 (372)
T 3ly7_A 307 -EMSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLYW 348 (372)
T ss_dssp -CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHHH
Confidence 467777777777788888888888888777775 455555543
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.61 E-value=0.025 Score=53.55 Aligned_cols=129 Identities=9% Similarity=-0.071 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHHhh--cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhc----CCCh-H------HHHHHh---hh
Q 006303 153 SGFKLLKNECQRLLD--SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVN----KPDV-N------LAIRYA---CI 216 (651)
Q Consensus 153 ~~~~~l~~~~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~-~------~A~~~~---~~ 216 (651)
..+..++++...+.+ .....+|+.+|++.++.. |+...++..+.-++.. .+.. . .+.+.. ..
T Consensus 195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~ 272 (372)
T 3ly7_A 195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272 (372)
T ss_dssp GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence 356666665444332 456789999999999855 7776666665544431 0000 0 111111 11
Q ss_pred CCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 217 VPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 217 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
.|.+..++..+...+...|++++|+..++++...+ |+...|..+...+.-.|++++|.+.|++....
T Consensus 273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 13444555555555555566666666666666632 55555555555666666666666666665554
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.029 Score=55.42 Aligned_cols=96 Identities=9% Similarity=0.041 Sum_probs=70.7
Q ss_pred hcCCHHHHHHHHHHHHhc-----CCC-Cc-HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCCh
Q 006303 233 KKRDLVSALRAYDASKKH-----LSS-PN-MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDL 305 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~-----~~~-~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~ 305 (651)
..|++++|+.++++.++. |.. |+ ..+++.|..+|...|++++|+.++++...
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~--------------------- 368 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIK--------------------- 368 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------------
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------------
Confidence 457889999999877653 211 22 45788999999999999999999887543
Q ss_pred HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 306 KFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
+++.......+-...+++.|...|...|++++|+.+|++..++.
T Consensus 369 -----i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~ 412 (433)
T 3qww_A 369 -----PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIM 412 (433)
T ss_dssp -----HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred -----HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence 33333322222235679999999999999999999999888754
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.048 Score=53.94 Aligned_cols=101 Identities=10% Similarity=-0.076 Sum_probs=68.8
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcC---CCC----cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh
Q 006303 228 VREFGKKRDLVSALRAYDASKKHL---SSP----NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV 300 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 300 (651)
+..+.++|++++|+..+++.++.. +.| ...+++.+..+|...|++++|+.++++...
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~---------------- 357 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTME---------------- 357 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH----------------
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH----------------
Confidence 445566778888888887776531 112 134677777788888888888887776542
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhh
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLE 354 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 354 (651)
+++...-...+....+++.|...|...|++++|..++++..++.
T Consensus 358 ----------i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~ 401 (429)
T 3qwp_A 358 ----------PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIM 401 (429)
T ss_dssp ----------HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred ----------hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 33333222222235678899999999999999999999887654
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.025 Score=41.90 Aligned_cols=65 Identities=11% Similarity=0.005 Sum_probs=52.4
Q ss_pred hhhhHHHHHhhhccCC---hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC
Q 006303 71 NDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~ 143 (651)
+..+..++.++...++ ..+|..+|++.++. +|+.. .++..++..+...|++++|+..|+++.+..
T Consensus 6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~------rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNE------AALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 6777788887764444 79999999999998 88744 444556777999999999999999999853
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.026 Score=42.29 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=32.2
Q ss_pred HHHHcccCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 371 KVFADAKWWQMALKVKEDMLSAGVTPNTI-TWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 371 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
..+...|++++|...|+++.+... .+.. .+..+..++...|++++|...|++..+..
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 344555666666666666555421 2344 55556666666666666666666665553
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.12 Score=46.94 Aligned_cols=67 Identities=9% Similarity=0.018 Sum_probs=32.7
Q ss_pred ccHHHHHHHHhhc-----CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCc
Q 006303 222 ILFCNFVREFGKK-----RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGIC-GDYMKSRAIYEDLRSQNVT 288 (651)
Q Consensus 222 ~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~g~~ 288 (651)
.+|..|...|.+. |+.++|.+.|++.++....-+..++....+.++.. |+.+++.+.+++.......
T Consensus 200 sA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 200 AVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCC
Confidence 3455555555552 55555555555555522211244444445554442 5555555555555554443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.00 E-value=0.17 Score=55.28 Aligned_cols=130 Identities=15% Similarity=0.091 Sum_probs=78.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 006303 260 RTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGN 339 (651)
Q Consensus 260 ~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~ 339 (651)
..++..+.+.|.+++|.++.++- ....-+....|+++.|.++.+.+ .+...|..|...+.+.|+
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~----------~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~ 696 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQ----------DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFN 696 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCH----------HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCChHHheecCCCc----------chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCC
Confidence 55556666667776666554311 11122333456777776664433 367788899999999999
Q ss_pred HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 340 TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMH 419 (651)
Q Consensus 340 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~ 419 (651)
++.|++.|.++.. |..+...|...|+.+...++.+.....|. ++.-..+|.+.|++++|.+
T Consensus 697 ~~~A~~~y~~~~d-------------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 697 FKLAIEAFTNAHD-------------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HHHHHHHHHHHTC-------------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHccC-------------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHH
Confidence 9999999987753 33444455556666666666555555431 2333344555667777766
Q ss_pred HHHHH
Q 006303 420 LFEEM 424 (651)
Q Consensus 420 ~~~~~ 424 (651)
++.++
T Consensus 758 ~~~~~ 762 (814)
T 3mkq_A 758 LLIKS 762 (814)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66554
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.55 Score=39.01 Aligned_cols=98 Identities=9% Similarity=0.009 Sum_probs=72.6
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|+++.|.++.+.+ ++...|..++......|+++.|.+.|.+..+ +..+.-.|.-.|+.+...++-+..
T Consensus 18 lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----~~~L~~Ly~~tg~~e~L~kla~iA 86 (177)
T 3mkq_B 18 YGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS----FDKLSFLYLVTGDVNKLSKMQNIA 86 (177)
T ss_dssp TTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----HHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 79999999998875 3456799999999999999999999888753 555566677778887777666655
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...| -++.....+...|++++++++|.+.
T Consensus 87 ~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 87 QTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 5433 2444455566678888888888654
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.21 Score=41.56 Aligned_cols=98 Identities=15% Similarity=0.203 Sum_probs=54.1
Q ss_pred hcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 301 NAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 301 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|.+... +..+.-.|.-.|+.+
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D-------------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS-------------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC-------------HHHHHHHHHHHTCHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC-------------HHHHHHHHHHhCCHH
Confidence 346666666665554 3666666666666666666666666665432 334444455556655
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
....+-+.....|- ++.-..++.-.|+++++.++|.+
T Consensus 78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 55555444444331 33334444455666666666644
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.14 Score=46.43 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=75.7
Q ss_pred cHHHHHHHHHHHHHcCCCCc---HHHHHHHHHHHhcC-----CChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhc-
Q 006303 528 DYYRVKALMNEMRTVGLSPN---HISWTILIDACGGS-----GNVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRS- 596 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~- 596 (651)
....|..++++.++. .|+ ...|..+...|.+. |+.++|.+.|++.++. .| +..++..+...+++.
T Consensus 178 ~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L--nP~~~id~~v~YA~~l~~~~ 253 (301)
T 3u64_A 178 TVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY--CSAHDPDHHITYADALCIPL 253 (301)
T ss_dssp HHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH--CCTTCSHHHHHHHHHTTTTT
T ss_pred hHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh--CCCCCchHHHHHHHHHHHhc
Confidence 356888888888884 565 56889999999984 9999999999999994 55 477888888888884
Q ss_pred CCHHHHHHHHHHHHHCCCC--CCHHHHHHHH
Q 006303 597 KRLKQAFSLFEEMKHYQIQ--PNLVTYITLL 625 (651)
Q Consensus 597 g~~~~A~~~~~~m~~~g~~--p~~~~~~~l~ 625 (651)
|+.+++.+++++.++.... |+....+.+-
T Consensus 254 gd~~~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 254 NNRAGFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp TCHHHHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 9999999999999987666 7655544443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.041 Score=41.10 Aligned_cols=59 Identities=15% Similarity=0.125 Sum_probs=45.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHH-HHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
....+...|++++|.+.|+++.+. .+.+.. .+..+..+|...|++++|...|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT-----EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH-----CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455677788888888888888763 233556 78888888888888888888888888764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.25 E-value=0.41 Score=52.14 Aligned_cols=98 Identities=8% Similarity=0.001 Sum_probs=51.5
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.|++++|.++.+. .++...|..++..+.+.++++.|++.|..+.+ +..+...|...|+.+...++-+..
T Consensus 665 ~~~~~~A~~~~~~-------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----~~~l~~l~~~~~~~~~~~~~~~~a 733 (814)
T 3mkq_A 665 VGQLTLARDLLTD-------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD----LESLFLLHSSFNNKEGLVTLAKDA 733 (814)
T ss_dssp HTCHHHHHHHHTT-------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHh-------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----hhhhHHHHHHcCCHHHHHHHHHHH
Confidence 5777777766543 23445667777777777777777766655422 333444444455555544444443
Q ss_pred HhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 248 KKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 248 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
...| -++....+|.+.|++++|++++.++
T Consensus 734 ~~~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 734 ETTG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp HHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHcC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 3322 1222333344455555555555543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.24 Score=40.01 Aligned_cols=87 Identities=10% Similarity=0.040 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (651)
...+.+-|.+....|. ++..+.-.+.+++++.+ +.+++..+|++..+.+ .| +...+-.+.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 4456666676666655 68888888999999988 6679999999998864 24 3455666778899999999999
Q ss_pred HHHHHHHHCCCCCCHH
Q 006303 604 SLFEEMKHYQIQPNLV 619 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~~ 619 (651)
++++.+.+ +.|+..
T Consensus 92 ~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHH--HCTTCH
T ss_pred HHHHHHHh--cCCCCH
Confidence 99999996 467543
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.23 Score=36.50 Aligned_cols=66 Identities=11% Similarity=-0.043 Sum_probs=40.0
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 322 ADMASYNILLKACCLAGN---TVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
.|+..+..+..++...++ .++|..++++..+. -+-+......+...+.+.|++++|+..|+++.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~-----dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL-----EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH-----CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 455566666666554433 56677777766663 2334455666666666777777777777776655
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=94.47 E-value=5.5e-06 Score=79.39 Aligned_cols=235 Identities=11% Similarity=0.059 Sum_probs=143.9
Q ss_pred CCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHH
Q 006303 186 LPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDV 265 (651)
Q Consensus 186 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 265 (651)
...+.+..|+.++++....+...+|..-|-+.. ++..|..++....+.|.+++-++.+....+.. .+..+=+.|+.+
T Consensus 49 ~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~-Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~a 125 (624)
T 3lvg_A 49 ERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKAD-DPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFA 125 (624)
T ss_dssp SSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCS-CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHH
T ss_pred HHhCCccHHHHHHHHHHccCchHHHHHHHHhCC-ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHH
Confidence 346677889999999999999999988776653 45678889999999999999999988777653 344555688999
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHh-hc-CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 006303 266 CGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNV-NA-HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLA 343 (651)
Q Consensus 266 ~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~-~~-~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a 343 (651)
|++.++..+..+++. .|+..-...+-.- +. |.++.|.-+|.. ..-|..|...+.+.|++..|
T Consensus 126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~---------isN~akLAstLV~L~~yq~A 189 (624)
T 3lvg_A 126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNN---------VSNFGRLASTLVHLGEYQAA 189 (624)
T ss_dssp HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGG---------SCCCTTTSSSSSSCSGGGSS
T ss_pred HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHh---------CccHHHHHHHHHHHHHHHHH
Confidence 999998755444332 1221111111111 11 222222222221 12234445555566666655
Q ss_pred HHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006303 344 QEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEE 423 (651)
Q Consensus 344 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 423 (651)
.+.-++ .-++.+|..+..+|...+.+.-|..+--.++-. + .-...++..|.+.|.+++-+.+++.
T Consensus 190 VdaArK----------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---a--deL~elv~~YE~~G~f~ELIsLlEa 254 (624)
T 3lvg_A 190 VDGARK----------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---A--DELEELINYYQDRGYFEELITMLEA 254 (624)
T ss_dssp TTTTTT----------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---S--SCCSGGGSSSSTTCCCTTSTTTHHH
T ss_pred HHHHHh----------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---H--HHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 543321 236667888888888887776665544333321 1 1123456667778888887777777
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 424 MLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 424 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
-.... .....+|+-|.-.|+|- ++++..+.+
T Consensus 255 glglE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 255 ALGLE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp HTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred HhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 66332 45666777777777663 444444444
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=94.45 E-value=0.22 Score=40.23 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=62.9
Q ss_pred hhhccccCCccchhhhHHHHHhhhccC---ChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDG---RLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGV 135 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~ 135 (651)
+.+....++ .+..+.-.+..++.+.+ ++++++.+|+.+.+.. .|.. ..+.+..+...+.+.|++++|...
T Consensus 21 y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~-----~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 21 FQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEE-----QRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHH-----HHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-Cccc-----hHHHHHHHHHHHHHccCHHHHHHH
Confidence 333344444 34788888889999887 7779999999999983 2631 266778889999999999999999
Q ss_pred HHHHHHcCCCccc
Q 006303 136 LKKLNELGVAPLE 148 (651)
Q Consensus 136 l~~~~~~~~~~~~ 148 (651)
++.+++ ++|+.
T Consensus 94 ~~~lL~--ieP~n 104 (152)
T 1pc2_A 94 VRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHH--HCTTC
T ss_pred HHHHHh--cCCCC
Confidence 999999 56744
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.41 E-value=0.6 Score=35.12 Aligned_cols=70 Identities=10% Similarity=-0.054 Sum_probs=41.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC--ccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV--LKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+..-+..+...+.+.|++..|...|+...+...... -.....++..+..++.+.|+++.|...++++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 444555667777777777777777777665432210 0123455666666666666666666666666654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.29 Score=39.94 Aligned_cols=73 Identities=8% Similarity=0.051 Sum_probs=54.9
Q ss_pred chhhhHHHHHhhhccCChHHHHHHHHHHHHhc-CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 70 RNDYYADMASKLAKDGRLEEFAMIVESVVVSE-GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 70 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
+.+.+..-+..+...|.++.|+.+.+.++... .+|+..+.-....++...+.++..+|++.+|...|++.+..
T Consensus 19 ~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 19 SHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 35677777888889999999999999877652 23443333344667778888999999999999999998663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.5 Score=35.56 Aligned_cols=68 Identities=16% Similarity=0.048 Sum_probs=55.7
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAG------VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
.+...+..|...+.+.|+++.|...|+...+.- -.+....+..+..++.+.|+++.|..+++++.+..
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 466677788999999999999999998887531 12356778889999999999999999999998763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.32 E-value=1.2 Score=43.19 Aligned_cols=127 Identities=7% Similarity=-0.060 Sum_probs=78.8
Q ss_pred ccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC--CCccccchHHHHHHHHhcCCChHHHHH-HhhhCCCCCccHHH
Q 006303 150 FDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR--LPVKELDEEFRIVQLCVNKPDVNLAIR-YACIVPRADILFCN 226 (651)
Q Consensus 150 ~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~-~~~~~~~~~~~~~~ 226 (651)
.+...|..++.........|+.+.|...+++++..- ....+.. ...+..+.+ .++.. -..+...
T Consensus 110 ~D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~--~~~a~~~ 176 (388)
T 2ff4_A 110 CDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVED--KVLAHTA 176 (388)
T ss_dssp BHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHH--HHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHH--HHHHHHH
Confidence 344445555554444444678888888888887642 1111110 001111100 00000 0023445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCccc
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLN 290 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~ 290 (651)
++..+...|++++++..+..+.... +-+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|.
T Consensus 177 ~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~ 244 (388)
T 2ff4_A 177 KAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPG 244 (388)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 7788889999999999998887743 24788999999999999999999999998754 255554
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=93.15 E-value=2.2 Score=34.14 Aligned_cols=113 Identities=12% Similarity=0.059 Sum_probs=77.6
Q ss_pred CCHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHhhhcCCccccHH-HHHHHHH------HHHcccCHHHHHHHHHH
Q 006303 322 ADMASYNILLKACCLAGNT------VLAQEIYGEVKHLEAKGVLKLDVF-TYSTIVK------VFADAKWWQMALKVKED 388 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~~~~~-~~~~l~~------~~~~~~~~~~a~~~~~~ 388 (651)
-|..+|-..+...-+.|+. +...++|++.... ++|+.. .|...+. .+...++.++|.++|+.
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-----~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~ 85 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-----LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQM 85 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-----SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-----CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 4677787777777777887 7888888887763 555532 1222222 12345889999999999
Q ss_pred HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 389 MLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 389 m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
++..+-. =...|......-.+.|+...|.+++...+..+.+| ...+...+.
T Consensus 86 a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~-~~~le~a~~ 136 (161)
T 4h7y_A 86 ARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP-LEMLEIALR 136 (161)
T ss_dssp HHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC-HHHHHHHHH
T ss_pred HHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc-HHHHHHHHH
Confidence 9765322 26777777777789999999999999999876443 334444443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.73 E-value=4.6 Score=39.90 Aligned_cols=163 Identities=12% Similarity=0.157 Sum_probs=82.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHHHHhc--CCCCc---HHhHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCcccH----
Q 006303 225 CNFVREFGKKRDLVSALRAYDASKKH--LSSPN---MYICRTIIDVCGICGDYMKSRAIYEDLRS----QNVTLNI---- 291 (651)
Q Consensus 225 ~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~g~~~~~---- 291 (651)
..|...|...|++.+|.+++.++... |.... ...+...++.|...+++..|..++..... ....|+.
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 44667777777777777777776532 11111 34566667777777777777777776532 2222221
Q ss_pred HHHHHHHHhhcCChHHHHHHHHHHHHC-CCCCCHHhHHHHHH----HHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHH
Q 006303 292 YVFNSLMNVNAHDLKFTLEVYKNMQKL-GVMADMASYNILLK----ACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTY 366 (651)
Q Consensus 292 ~~~~~ll~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 366 (651)
..+...+....+++.+|-+.|.+.... ....|...+..++. ...-.+....-..+...... .. .-++...|
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~---~~-~~~~l~~~ 296 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQN---DN-NLKKLESQ 296 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHH---HS-SCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhh---cc-cccccHHH
Confidence 122333333446777666666555331 11112222222111 11111111111222222221 11 23567778
Q ss_pred HHHHHHHHc--ccCHHHHHHHHHHHHH
Q 006303 367 STIVKVFAD--AKWWQMALKVKEDMLS 391 (651)
Q Consensus 367 ~~l~~~~~~--~~~~~~a~~~~~~m~~ 391 (651)
..++.+|.. ..+++.+...|.....
T Consensus 297 ~~L~k~f~~~~L~~~~~~~~~~~~~L~ 323 (445)
T 4b4t_P 297 ESLVKLFTTNELMRWPIVQKTYEPVLN 323 (445)
T ss_dssp HHHHHHHHHCCSSSHHHHHHHTCSSTT
T ss_pred HHHHHHHHhchHhhhHHHHHHHHHHhc
Confidence 888888865 3678888887776554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=92.51 E-value=3 Score=32.52 Aligned_cols=139 Identities=12% Similarity=-0.030 Sum_probs=86.2
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
-.|.+++..++..+.... .+..-||.++--....-+=+-..++++..-+. -|. ..++++.....-+
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi--------s~C~NlKrVi~C~ 84 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL--------DKCQNLKSVVECG 84 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG--------GGCSCTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc--------HhhhcHHHHHHHH
Confidence 457788888888777662 35556666665554444444444444443221 111 1234444444444
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
-.+- .+..-+...++.+...|+.++-.+++..+.. ..+|++...-.+..+|.+.|+..++.+++.+..+.
T Consensus 85 ~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-----n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 85 VINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-----NNEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC-------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-----cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 4332 3555666777778888888888887777422 14677777788888888888888888888888887
Q ss_pred CCC
Q 006303 393 GVT 395 (651)
Q Consensus 393 ~~~ 395 (651)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 754
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=90.78 E-value=1.5 Score=34.00 Aligned_cols=86 Identities=9% Similarity=0.021 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEG---ALQILKIMREDGMSP--DVVAYTTAIKVCVRSKRLKQAF 603 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~~~~~~~~p--~~~~~~~li~~~~~~g~~~~A~ 603 (651)
...+.+-|......|. ++..+--.+.+++.+..+... ++.+++++.+.+ .| .....-.+.-++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 3455555555555454 677777788999999887665 899999988753 23 2334446677899999999999
Q ss_pred HHHHHHHHCCCCCCH
Q 006303 604 SLFEEMKHYQIQPNL 618 (651)
Q Consensus 604 ~~~~~m~~~g~~p~~ 618 (651)
++++.+.+. .|+-
T Consensus 95 ~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 95 KYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHH--CTTC
T ss_pred HHHHHHHHh--CCCC
Confidence 999999864 5654
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.08 E-value=3.6 Score=39.81 Aligned_cols=77 Identities=17% Similarity=0.123 Sum_probs=62.1
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCCHHHHHHHH
Q 006303 551 WTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK-----HYQIQPNLVTYITLL 625 (651)
Q Consensus 551 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-----~~g~~p~~~~~~~l~ 625 (651)
...++..+...|++++|...+..+.... +.+...|..+|.++.+.|+..+|++.|+++. +.|+.|...+-...-
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~ 252 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE 252 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 4456778888999999999999887743 3478899999999999999999999999875 469999998765544
Q ss_pred HHH
Q 006303 626 RAR 628 (651)
Q Consensus 626 ~~~ 628 (651)
..+
T Consensus 253 ~il 255 (388)
T 2ff4_A 253 RIL 255 (388)
T ss_dssp HHH
T ss_pred HHH
Confidence 444
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.63 E-value=7.8 Score=43.79 Aligned_cols=218 Identities=11% Similarity=0.020 Sum_probs=119.1
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA 302 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~ 302 (651)
....++..+...+.++.+.++..-. +.+....-.+..+|...|++++|.+.|.+.-. |+..+....
T Consensus 814 ~~~~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~-------- 879 (1139)
T 4fhn_B 814 LVTELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQF-------- 879 (1139)
T ss_dssp HHHHHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSC--------
T ss_pred hHHHHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhh--------
Confidence 3445677777888887777654332 23444445567778889999999999976522 221110000
Q ss_pred CChHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHH
Q 006303 303 HDLKFTLEVYKNMQKLGV--MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQ 380 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (651)
.. ..-+..+..... ..-..=|..++..+.+.+.++.+.+.-....+....+........|..+.+.+...|+++
T Consensus 880 ~~----~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye 955 (1139)
T 4fhn_B 880 AV----LREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFD 955 (1139)
T ss_dssp SS----HHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSG
T ss_pred hh----hcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHH
Confidence 00 001111211110 112234666777777888888888777666553211100011225778888888888888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH------------HHHHHHHHHHHH-c-CCCCCHHHHHHHHHHHHhc
Q 006303 381 MALKVKEDMLSAGVTPNTITWSSLINACANAGLV------------EQAMHLFEEMLQ-A-GCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 381 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~------------~~a~~~~~~~~~-~-~~~~~~~~~~~ll~~~~~~ 446 (651)
+|...+-.+..... -......++..+|..|.. +++.+++....+ . .+...+.-|..|-.-+...
T Consensus 956 ~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r 1033 (1139)
T 4fhn_B 956 AAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKH 1033 (1139)
T ss_dssp GGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhcc
Confidence 88888877766533 344566666666655543 344444443221 1 1122223355555555667
Q ss_pred CChhHH-HHHHHHhh
Q 006303 447 CQFDRA-FRLFRSWT 460 (651)
Q Consensus 447 g~~~~a-~~~~~~~~ 460 (651)
|++.+| .-+|+.+.
T Consensus 1034 ~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 1034 QNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HTTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHH
Confidence 777655 44555543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=89.21 E-value=7.4 Score=31.15 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=36.2
Q ss_pred hcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 527 TDYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 527 ~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
++.++|.++|+.++..+-. -..+|.....--.+.|+++.|.+++.+.+..+.+ +...++..+.
T Consensus 74 ~D~d~aR~vy~~a~~~hKk-FAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k-~~~~le~a~~ 136 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKK-FAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV-PLEMLEIALR 136 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTT-BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB-CHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC-cHHHHHHHHH
Confidence 4666777777776554222 2555555555556677777777777777665544 3333444333
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.52 E-value=3.5 Score=43.44 Aligned_cols=54 Identities=13% Similarity=0.071 Sum_probs=42.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHH
Q 006303 331 LKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDM 389 (651)
Q Consensus 331 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m 389 (651)
.+.+...|+++.|.++-++.... .+.+-.+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~-----aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTEL-----ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH-----CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhc-----CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 34456778899999988888773 3444668999999999999999998887776
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.79 E-value=5.9 Score=41.75 Aligned_cols=139 Identities=12% Similarity=0.094 Sum_probs=80.2
Q ss_pred hhhHHHHHhhhccCC-hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhh-cChhHHHHHHHHHHHc------C
Q 006303 72 DYYADMASKLAKDGR-LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIRE-GRIDCVVGVLKKLNEL------G 143 (651)
Q Consensus 72 ~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-g~~~~a~~~l~~~~~~------~ 143 (651)
.....++..+...|+ .+.|+.+|+++... +|..-.. .. ..++...... .+--+|+.++.+.++. .
T Consensus 249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~--~~---~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~ 321 (754)
T 4gns_B 249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIY--YK---TAMITILDHIETKELDMITILNETLDPLLSLLND 321 (754)
T ss_dssp HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHH--HH---HHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcccccHHHHHHHHHHHHHhh--CCchhHH--HH---HHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhh
Confidence 344556666666677 47799999999888 6642110 00 1111111111 2333555555555431 1
Q ss_pred CCccccc----cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCC
Q 006303 144 VAPLELF----DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPR 219 (651)
Q Consensus 144 ~~~~~~~----~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 219 (651)
..+.... ......+|.--+.-+.+.|+++.|+++-++.+... |.++..|..|...|...|+++.|+-.+...|-
T Consensus 322 l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNScPm 399 (754)
T 4gns_B 322 LPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSMPR 399 (754)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSCC
T ss_pred hcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcCCC
Confidence 2222110 01111222222233445788999999988887744 88888888888888888888888888777763
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.70 E-value=7.6 Score=28.44 Aligned_cols=48 Identities=19% Similarity=0.361 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Q 006303 529 YYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE 576 (651)
Q Consensus 529 ~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~ 576 (651)
.-+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+-++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~ 73 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 73 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344445555555555555555555555555555555555555555544
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=86.67 E-value=9.9 Score=29.74 Aligned_cols=141 Identities=9% Similarity=0.046 Sum_probs=96.1
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
..-.|..++..++..+..... +-. -++.++ +...+.-+-+-..++++.+-..- . ..
T Consensus 17 ~ildG~v~qGveii~k~~~ss--ni~-----E~NW~I---CNiiD~a~C~y~v~vLd~IGkiF-D-------------is 72 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS--TKS-----EYNWFI---CNLLESIDCRYMFQVLDKIGSYF-D-------------LD 72 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CHH-----HHTHHH---HHHHHHCCHHHHHHHHHHHGGGS-C-------------GG
T ss_pred HHHhhhHHHHHHHHHHHcCCC--Ccc-----ccceee---eecchhhchhHHHHHHHHHhhhc-C-------------cH
Confidence 345778888888888877632 111 122222 12222344455566666653321 1 12
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..++.......+-.+....+.....++.+..+|+-++-.+++.++.. +.+|++...-.+..+|.+.|+..++.+++.+.
T Consensus 73 ~C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 73 KCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp GCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 35566666666666666667778888999999999999999999654 24578888999999999999999999999999
Q ss_pred HhCCCc
Q 006303 283 RSQNVT 288 (651)
Q Consensus 283 ~~~g~~ 288 (651)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 999875
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=86.66 E-value=5.8 Score=29.05 Aligned_cols=73 Identities=12% Similarity=0.196 Sum_probs=54.3
Q ss_pred HHHHhcCC-ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 555 IDACGGSG-NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 555 i~~~~~~g-~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
...|.+.. +.=+..+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+.. +.+...+|..+++-+
T Consensus 16 ~~~F~~~~iD~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lqEl 89 (109)
T 1v54_E 16 VTYFNKPDIDAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 89 (109)
T ss_dssp HHHHTCTTCCHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred HHHcCCcCccHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHHHH
Confidence 33343444 45567777788888889999999999999999999999999999988743 233345677777643
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=86.19 E-value=5 Score=31.08 Aligned_cols=84 Identities=10% Similarity=-0.009 Sum_probs=61.8
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHH
Q 006303 562 GNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQ---AFSLFEEMKHYQIQP--NLVTYITLLRARSRYGSLHE 636 (651)
Q Consensus 562 g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~~~~~l~~~~~~~g~~~~ 636 (651)
..+..+.+-+.+....|. ++..+--.+..++.+..+... ++.++++..+.+ .| .......+.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence 344556666666655443 788888888899999887665 889999987653 24 44566677779999999999
Q ss_pred HHHHHHHHHHH
Q 006303 637 VQQCLAVYQDM 647 (651)
Q Consensus 637 a~~~~~~~~~m 647 (651)
|.+..+.+-++
T Consensus 93 A~~~~~~lL~~ 103 (126)
T 1nzn_A 93 ALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99977766554
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.94 E-value=6 Score=32.30 Aligned_cols=124 Identities=12% Similarity=0.055 Sum_probs=64.4
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHc-CCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCC-ccccchHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNEL-GVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLP-VKELDEEF 195 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~ 195 (651)
.-+..+...|.++.|+-+.+.+... +..|+...-..-+..+......+...+++..|...|++.++.... ++......
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 3456677889999999888886664 223332222233444444444566689999999999987643211 11111000
Q ss_pred HHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHh
Q 006303 196 RIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKK 249 (651)
Q Consensus 196 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 249 (651)
.+.. ....+. . +. .+.+.++..-+..+|.+.+++++|+.+++.+..
T Consensus 105 ~~~~---~ss~p~---s-~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 105 STGN---SASTPQ---S-QC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp -------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred cccc---cCCCcc---c-cc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 0000 000000 0 00 112224555577777777777777777766543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.45 E-value=23 Score=39.92 Aligned_cols=193 Identities=7% Similarity=-0.028 Sum_probs=104.6
Q ss_pred HHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcC--------------------C-
Q 006303 194 EFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHL--------------------S- 252 (651)
Q Consensus 194 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------------------~- 252 (651)
...++..+...+.++.+..+....+.++.....++.+|...|++++|.+.|.+....- .
T Consensus 815 ~~~l~~~l~~~~~~~~~~~l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~ 894 (1139)
T 4fhn_B 815 VTELVEKLFLFKQYNACMQLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHH 894 (1139)
T ss_dssp HHHHHHHHHHHSCTTHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccc
Confidence 3445556666677777777766666666555666777777777777777776432100 0
Q ss_pred -CCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCccc----HHHHHHHHHhhc--CChHHHHHHHHHHHHCCCCCCHH
Q 006303 253 -SPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLN----IYVFNSLMNVNA--HDLKFTLEVYKNMQKLGVMADMA 325 (651)
Q Consensus 253 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~----~~~~~~ll~~~~--~~~~~a~~~~~~m~~~~~~~~~~ 325 (651)
..-..-|..++..+.+.+.++.+.++-....+....-+ ...|..+++... +++++|...+-.+..... -..
T Consensus 895 ~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~--r~~ 972 (1139)
T 4fhn_B 895 QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL--KKS 972 (1139)
T ss_dssp CCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS--CHH
T ss_pred cccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH--HHH
Confidence 00123466677777777777777766665554322111 124555555433 677777666666655432 234
Q ss_pred hHHHHHHHHHh------------cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH-HHHHHHHH
Q 006303 326 SYNILLKACCL------------AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA-LKVKEDML 390 (651)
Q Consensus 326 ~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~m~ 390 (651)
.+..|+..+|. .|..++..+++..-.+.... .......|..|=.-+...|++..| .-+|+.+.
T Consensus 973 cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~--~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 973 CLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMIN--VESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHH--HCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCc--cccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 45555554443 25567777776544321100 122233455555555666776544 33444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=85.29 E-value=8.9 Score=27.92 Aligned_cols=87 Identities=7% Similarity=-0.100 Sum_probs=57.2
Q ss_pred cCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHH
Q 006303 234 KRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYK 313 (651)
Q Consensus 234 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~ 313 (651)
....++|..+-+-+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+.
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~ 93 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEYRLGLGSALESRLN 93 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHHHHTCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHH
Confidence 3455666666666555322 12222222334667899999988877665 78999999988888888888888887
Q ss_pred HHHHCCCCCCHHhH
Q 006303 314 NMQKLGVMADMASY 327 (651)
Q Consensus 314 ~m~~~~~~~~~~~~ 327 (651)
++..+|. |....|
T Consensus 94 ~la~sg~-p~~q~F 106 (116)
T 2p58_C 94 RLARSQD-PRIQTF 106 (116)
T ss_dssp HHTTCCC-HHHHHH
T ss_pred HHHhCCC-HHHHHH
Confidence 8877663 344444
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.86 E-value=8.5 Score=27.99 Aligned_cols=86 Identities=9% Similarity=-0.111 Sum_probs=56.7
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKN 314 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~ 314 (651)
...++|..+-+-+...+. ...+--+-+..+...|+|++|..+.+.+. .||...|-++-....|-.+.+..-+.+
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~rlGl~s~le~rL~~ 93 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCEWHLGLGAALDRRLAG 93 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHHhcccHHHHHHHHHH
Confidence 455666666666555322 12222222334667899999988776554 789999999888888888888888878
Q ss_pred HHHCCCCCCHHhH
Q 006303 315 MQKLGVMADMASY 327 (651)
Q Consensus 315 m~~~~~~~~~~~~ 327 (651)
+..+|. |....|
T Consensus 94 la~sg~-p~~q~F 105 (115)
T 2uwj_G 94 LGGSSD-PALADF 105 (115)
T ss_dssp HHTCSS-HHHHHH
T ss_pred HHhCCC-HHHHHH
Confidence 877763 344444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=84.53 E-value=49 Score=35.83 Aligned_cols=271 Identities=9% Similarity=-0.040 Sum_probs=131.8
Q ss_pred cCChHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh--cCC-ccccHHHHHHHHHHHHcc
Q 006303 302 AHDLKFTLEVYKNMQKLGVMADM--ASYNILLKACCLAGNTVLAQEIYGEVKHLEA--KGV-LKLDVFTYSTIVKVFADA 376 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~-~~~~~~~~~~l~~~~~~~ 376 (651)
.++.++++.+++.....+-..+. ..-..+.-+....|..+++..++........ .|. -.+....-.++.-+++-.
T Consensus 387 ~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~ 466 (963)
T 4ady_A 387 KGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAM 466 (963)
T ss_dssp SSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHST
T ss_pred cCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhc
Confidence 35666666666655432101122 2222233344555655566666665543110 000 001111222333333333
Q ss_pred cC-HHHHHHHHHHHHHCCCCCCHHH--HH--HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCh
Q 006303 377 KW-WQMALKVKEDMLSAGVTPNTIT--WS--SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQF 449 (651)
Q Consensus 377 ~~-~~~a~~~~~~m~~~~~~~~~~~--~~--~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~ 449 (651)
|. -+++...+..++... +... .. .|...+.-.|+.+....++..+.+. .+..+...+.-+ +...|+.
T Consensus 467 GS~~eev~e~L~~~L~dd---~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~ 540 (963)
T 4ady_A 467 GSANIEVYEALKEVLYND---SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQ 540 (963)
T ss_dssp TCCCHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCG
T ss_pred CCCCHHHHHHHHHHHhcC---CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCCh
Confidence 32 245556666555432 2211 12 2333344567777777777766653 233333333333 3356788
Q ss_pred hHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHH--HHhh
Q 006303 450 DRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMK--ACCT 527 (651)
Q Consensus 450 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~--~~~~ 527 (651)
+.+..+++.+.... .|....-..+.. +|++
T Consensus 541 e~~~~li~~L~~~~------------------------------------------------dp~vRygaa~alglAyaG 572 (963)
T 4ady_A 541 ELADDLITKMLASD------------------------------------------------ESLLRYGGAFTIALAYAG 572 (963)
T ss_dssp GGGHHHHHHHHHCS------------------------------------------------CHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhCC------------------------------------------------CHHHHHHHHHHHHHHhcC
Confidence 88877777665421 233322223333 3444
Q ss_pred --cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHH
Q 006303 528 --DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRL-KQAFS 604 (651)
Q Consensus 528 --~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~ 604 (651)
+.....++++.+... ...+..-...+.-++...|+.+.+.++++.+.+.+ .|....-..+.-+....|.. .++..
T Consensus 573 TGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid 650 (963)
T 4ady_A 573 TGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAID 650 (963)
T ss_dssp SCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHH
Confidence 555666688888764 22233333334445555777777777777666643 34444333444444445443 57788
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 605 LFEEMKHYQIQPNLVTYITLLRARSRY 631 (651)
Q Consensus 605 ~~~~m~~~g~~p~~~~~~~l~~~~~~~ 631 (651)
++..+.. .+|..+-...+.++...
T Consensus 651 ~L~~L~~---D~d~~Vrq~Ai~ALG~I 674 (963)
T 4ady_A 651 VLDPLTK---DPVDFVRQAAMIALSMI 674 (963)
T ss_dssp HHHHHHT---CSSHHHHHHHHHHHHHH
T ss_pred HHHHHcc---CCCHHHHHHHHHHHHHH
Confidence 8888863 35555554444444433
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=84.32 E-value=4.7 Score=31.45 Aligned_cols=75 Identities=12% Similarity=-0.034 Sum_probs=57.1
Q ss_pred CCccchhhhHHHHHhhhccCC---hHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHc
Q 006303 66 DLSSRNDYYADMASKLAKDGR---LEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNEL 142 (651)
Q Consensus 66 ~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~ 142 (651)
.+.+++.+--.++.++.+... ...++.+++.+.+. .|.. ..+-+..++.++.+.|++++|....+.+++
T Consensus 35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~--~~~~-----~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~- 106 (134)
T 3o48_A 35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESR-----RRECLYYLTIGCYKLGEYSMAKRYVDTLFE- 106 (134)
T ss_dssp GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGG-----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHT-
T ss_pred CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc--Ccch-----hHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-
Confidence 355566777777777776644 45789999999987 4532 256667888899999999999999999998
Q ss_pred CCCcccc
Q 006303 143 GVAPLEL 149 (651)
Q Consensus 143 ~~~~~~~ 149 (651)
+.|+..
T Consensus 107 -~eP~N~ 112 (134)
T 3o48_A 107 -HERNNK 112 (134)
T ss_dssp -TCTTCH
T ss_pred -hCCCCH
Confidence 677553
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.24 E-value=13 Score=28.93 Aligned_cols=45 Identities=16% Similarity=0.274 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 566 GALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 566 ~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
+..+-++.+...++.|++......+++|-+.+|+..|.++|+-.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444445555555555555566655666655655555554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=83.52 E-value=12 Score=29.13 Aligned_cols=75 Identities=11% Similarity=-0.074 Sum_probs=54.8
Q ss_pred CCCcHHHHHHHHHHHhcCCC---hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 544 LSPNHISWTILIDACGGSGN---VEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 544 ~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
-.|+..+--.+.+++.+..+ ..+++.+++++.+.+..-....+-.+.-++.+.|++++|.++.+.+.+ +.|+-.-
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~Q 113 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNKQ 113 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCHH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCHH
Confidence 34667776667788877765 457888999888754212345566777899999999999999999985 4676543
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=80.49 E-value=18 Score=28.10 Aligned_cols=63 Identities=13% Similarity=0.158 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006303 378 WWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQ 441 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 441 (651)
|.=+..+-++.+...++.|+.......+++|.+.+++..|.++|+-++..- .+...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~-~~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc-CCchhhHHHHHH
Confidence 334556667777777889999999999999999999999999999887652 333445666554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 651 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.89 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.88 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.52 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.44 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.19 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.05 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.01 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.89 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.87 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.84 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.51 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.42 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.31 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.29 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.28 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.24 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.2 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.17 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.05 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.03 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.03 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.01 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.99 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.95 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.9 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.9 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.85 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.81 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.81 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.75 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.74 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.74 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.72 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.72 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.67 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.61 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.59 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.57 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.52 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.36 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.35 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.24 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.11 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.04 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.92 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.9 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.73 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.68 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 96.63 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.73 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.64 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 93.25 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 92.19 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 88.8 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.65 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 87.45 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 83.39 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=2.9e-19 Score=176.47 Aligned_cols=374 Identities=14% Similarity=0.095 Sum_probs=206.6
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
.+.+.|++++|++.++++++.. |++...+..++..+.+.|++++|...++.+ |.+..++..++..|.+.|++++
T Consensus 8 ~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~ 85 (388)
T d1w3ba_ 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence 3444799999999999988754 666666666666666666666666655443 4444555556666666666666
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHH-hhcCChHHHHHHHHHHHHC
Q 006303 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMN-VNAHDLKFTLEVYKNMQKL 318 (651)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~-~~~~~~~~a~~~~~~m~~~ 318 (651)
|+..+....+... .+...+..........+....+........................ ...+....+...+......
T Consensus 86 A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (388)
T d1w3ba_ 86 AIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET 164 (388)
T ss_dssp HHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence 6666665555322 2222333333333333444444333333333222212111111111 1223444444444444332
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 319 GVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 319 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
. +.+...+..+...+...|++++|...++..... .+-+...|..+...+...|++++|...+++....+ ..+.
T Consensus 165 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~ 237 (388)
T d1w3ba_ 165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL-----DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHA 237 (388)
T ss_dssp C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCH
T ss_pred C-cchhHHHHhhcccccccCcHHHHHHHHHHHHHh-----CcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHH
Confidence 2 223444445555555555555555555555442 12233445555555555555555555555555432 2244
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhh
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDR 478 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (651)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|.+.++
T Consensus 238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~--------------------- 295 (388)
T d1w3ba_ 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYN--------------------- 295 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH---------------------
Confidence 444555555555555555555555555442 2234445555555555555555555554
Q ss_pred hhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006303 479 ISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWTILIDAC 558 (651)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~ 558 (651)
..... .+.+...+..+...+
T Consensus 296 -----------------------------------------------------------~~~~~-~~~~~~~~~~l~~~~ 315 (388)
T d1w3ba_ 296 -----------------------------------------------------------TALRL-CPTHADSLNNLANIK 315 (388)
T ss_dssp -----------------------------------------------------------HHHHH-CTTCHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hhhcc-CCccchhhhHHHHHH
Confidence 44332 234566777777888
Q ss_pred hcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 006303 559 GGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPN-LVTYITLLRARSRYGS 633 (651)
Q Consensus 559 ~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~ 633 (651)
...|++++|...+++..+. .| +..+|..+..+|.+.|++++|.+.|++..+ +.|+ ...|..+..++.+.||
T Consensus 316 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 316 REQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HTTTCHHHHHHHHHHHTTS--CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTCC
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCC
Confidence 8888888888888888764 33 466777888888888888888888888875 3454 5677777777777664
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=3.1e-18 Score=168.91 Aligned_cols=379 Identities=14% Similarity=0.052 Sum_probs=260.9
Q ss_pred HHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhH
Q 006303 77 MASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFK 156 (651)
Q Consensus 77 l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~ 156 (651)
++..+-+.|++++|+..|+++++. .|+. ..++..++..+.+.|++++|+..|+++++. .|+.. .
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~p~~~------~ 68 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDN------TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA------E 68 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCH------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCH------H
Confidence 455667789999999999999888 6663 445566777788999999999999998884 44321 2
Q ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhh----hCCCCCccHHHHHHHHh
Q 006303 157 LLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYAC----IVPRADILFCNFVREFG 232 (651)
Q Consensus 157 ~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~----~~~~~~~~~~~l~~~~~ 232 (651)
.+......+...|++++|+..+....... +.....................+..... ..+..............
T Consensus 69 a~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
T d1w3ba_ 69 AYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK 146 (388)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 23333335556799999999998887754 3333333333333333333322222211 11222333344444444
Q ss_pred hcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHH
Q 006303 233 KKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVY 312 (651)
Q Consensus 233 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~ 312 (651)
..+....+...+........ .+...+..+...+...|++++|...++...
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al----------------------------- 196 (388)
T d1w3ba_ 147 ALGRLEEAKACYLKAIETQP-NFAVAWSNLGCVFNAQGEIWLAIHHFEKAV----------------------------- 196 (388)
T ss_dssp TTSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-----------------------------
T ss_pred ccchhhhhHHHHHHhhccCc-chhHHHHhhcccccccCcHHHHHHHHHHHH-----------------------------
Confidence 55555555555554444211 133444455555555555555555555443
Q ss_pred HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 313 KNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
+.. +-+...+..+...+...|++++|...++..... .+.+...+..+...+.+.|++++|+..|++..+.
T Consensus 197 ----~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 266 (388)
T d1w3ba_ 197 ----TLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL-----SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL 266 (388)
T ss_dssp ----HHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ----HhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHH-----hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 322 235677888889999999999999999988874 2456677888899999999999999999999887
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhccccccccccc
Q 006303 393 GVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDY 472 (651)
Q Consensus 393 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 472 (651)
.. -+..++..+...+...|++++|.+.++...... +.+...+..+..++.+.|++++|++.|++..+.
T Consensus 267 ~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---------- 334 (388)
T d1w3ba_ 267 QP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEV---------- 334 (388)
T ss_dssp CS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTS----------
T ss_pred CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHHh----------
Confidence 43 367888899999999999999999999988774 667778888889999999999999998876532
Q ss_pred CCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhhcHHHHHHHHHHHHHcCCCCcHHHHH
Q 006303 473 DGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCTDYYRVKALMNEMRTVGLSPNHISWT 552 (651)
Q Consensus 473 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~a~~~~~~~~~~~~~p~~~~~~ 552 (651)
.| -+..++.
T Consensus 335 ---------------------------------------~p--------------------------------~~~~~~~ 343 (388)
T d1w3ba_ 335 ---------------------------------------FP--------------------------------EFAAAHS 343 (388)
T ss_dssp ---------------------------------------CT--------------------------------TCHHHHH
T ss_pred ---------------------------------------CC--------------------------------CCHHHHH
Confidence 11 1355677
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCC
Q 006303 553 ILIDACGGSGNVEGALQILKIMREDGMSP-DVVAYTTAIKVCVRSKR 598 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p-~~~~~~~li~~~~~~g~ 598 (651)
.+...|.+.|++++|...|++.++. .| +...|..+..+|.+.||
T Consensus 344 ~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 7888888999999999999988874 45 46788888888887775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=4e-12 Score=121.01 Aligned_cols=265 Identities=15% Similarity=0.039 Sum_probs=167.4
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVS 239 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~ 239 (651)
.+.+.|++++|+..|+++++.. |.+..++..++..+...|++++|...+.++ |.+...+..++..|...|++++
T Consensus 28 ~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~ 105 (323)
T d1fcha_ 28 RRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQ 105 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccc
Confidence 4455799999999999988755 666666666666666666666666555442 4444555556666666666666
Q ss_pred HHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCC
Q 006303 240 ALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLG 319 (651)
Q Consensus 240 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~ 319 (651)
|.+.++...... |+.......................... + ...+...++...+.+.....
T Consensus 106 A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~--~~~~~~~~a~~~~~~al~~~ 166 (323)
T d1fcha_ 106 ACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGS---------------L--LSDSLFLEVKELFLAAVRLD 166 (323)
T ss_dssp HHHHHHHHHHTS--TTTGGGCC---------------CTTHH---------------H--HHHHHHHHHHHHHHHHHHHS
T ss_pred cccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHH---------------H--HHhhHHHHHHHHHHHHHHHh
Confidence 666666555421 2111000000000000000000000000 0 01134556777777765532
Q ss_pred -CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH
Q 006303 320 -VMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 320 -~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
-..+...+..+...+...|++++|...|+..... .+-+...|..+..+|...|++++|++.|++.++.. +-+.
T Consensus 167 p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 240 (323)
T d1fcha_ 167 PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV-----RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYI 240 (323)
T ss_dssp TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred hcccccccchhhHHHHHHHHHHhhhhccccccccc-----ccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccH
Confidence 2345778888889999999999999999998874 23457789999999999999999999999998764 2367
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHhcCChhHHHHH
Q 006303 399 ITWSSLINACANAGLVEQAMHLFEEMLQAG----------CEPNSQCCNILLQACVEACQFDRAFRL 455 (651)
Q Consensus 399 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----------~~~~~~~~~~ll~~~~~~g~~~~a~~~ 455 (651)
.+|..+..+|.+.|++++|+..|++.++.. .......|..+-.++...++.+.+...
T Consensus 241 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~ 307 (323)
T d1fcha_ 241 RSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA 307 (323)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 789999999999999999999999987631 122233455566666666666655433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.44 E-value=5.8e-11 Score=112.76 Aligned_cols=254 Identities=13% Similarity=0.021 Sum_probs=160.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006303 330 LLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACA 409 (651)
Q Consensus 330 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 409 (651)
....+.+.|++++|+..|+.+.+. .+-+..+|..+..+|...|++++|...|.+..+... -+...+..+..+|.
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~-----~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~ 98 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQ-----DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 98 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHS-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc-cccccccccccccc
Confidence 444556667777777777766652 122355666666677777777777777766665432 24556666666667
Q ss_pred hcCCHHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCc
Q 006303 410 NAGLVEQAMHLFEEMLQAGCE--------------PNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGN 475 (651)
Q Consensus 410 ~~g~~~~a~~~~~~~~~~~~~--------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 475 (651)
..|++++|.+.++++...... .+.......+..+...+.+.++.+.|.+......
T Consensus 99 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p----------- 167 (323)
T d1fcha_ 99 NESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP----------- 167 (323)
T ss_dssp HTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHST-----------
T ss_pred ccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhh-----------
Confidence 777777777777666553210 0000111122233344556666666665543221
Q ss_pred hhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--hcHHHHHHHHHHHHHcCCCCcHHHHHH
Q 006303 476 TDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--TDYYRVKALMNEMRTVGLSPNHISWTI 553 (651)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~a~~~~~~~~~~~~~p~~~~~~~ 553 (651)
-..+...+..+...+. +++++|...+++...... -+...|..
T Consensus 168 -----------------------------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~ 211 (323)
T d1fcha_ 168 -----------------------------------TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNK 211 (323)
T ss_dssp -----------------------------------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred -----------------------------------cccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhh
Confidence 1234445555544443 478888888888876532 25778889
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHHHHHH
Q 006303 554 LIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHY----------QIQPNLVTYIT 623 (651)
Q Consensus 554 li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~ 623 (651)
+...|...|++++|.+.|++..+.. +-+...|..+..+|.+.|++++|++.|++.++. ........|..
T Consensus 212 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~ 290 (323)
T d1fcha_ 212 LGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWST 290 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHH
T ss_pred hhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHH
Confidence 9999999999999999999998842 225778889999999999999999999988741 12233345666
Q ss_pred HHHHHHhcCCHHHH
Q 006303 624 LLRARSRYGSLHEV 637 (651)
Q Consensus 624 l~~~~~~~g~~~~a 637 (651)
+-.++...|+.+.+
T Consensus 291 l~~al~~~~~~d~~ 304 (323)
T d1fcha_ 291 LRLALSMLGQSDAY 304 (323)
T ss_dssp HHHHHHHHTCGGGH
T ss_pred HHHHHHHcCCHHHH
Confidence 66677777766543
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.19 E-value=2.8e-09 Score=102.34 Aligned_cols=292 Identities=12% Similarity=0.002 Sum_probs=175.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELF 150 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~ 150 (651)
.......+..+...|++++|+++|++.+.. .|+.... ....++..++..+...|++++|+..|++..+.. +....
T Consensus 12 ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~--~~~~~~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~--~~~~~ 86 (366)
T d1hz4a_ 12 AEFNALRAQVAINDGNPDEAERLAKLALEE--LPPGWFY-SRIVATSVLGEVLHCKGELTRSLALMQQTEQMA--RQHDV 86 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CCTTCHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CcCCCcH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--Hhhcc
Confidence 444555567778899999999999999887 4432111 123456677888999999999999999988742 11111
Q ss_pred cchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHH
Q 006303 151 DGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVRE 230 (651)
Q Consensus 151 ~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~ 230 (651)
.......+......+...|++..+...+.+............ . +.....+..+...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~-------------~-----------~~~~~~~~~la~~ 142 (366)
T d1hz4a_ 87 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ-------------L-----------PMHEFLVRIRAQL 142 (366)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT-------------S-----------THHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccch-------------h-----------hHHHHHHHHHHHH
Confidence 122333444445566667888888888877654210000000 0 0001234456667
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCC----CcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCcccH--HHHHHHHH-
Q 006303 231 FGKKRDLVSALRAYDASKKHLSS----PNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ----NVTLNI--YVFNSLMN- 299 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----g~~~~~--~~~~~ll~- 299 (651)
+...|+++.+...+......... ....++..+...+...+++..+...+...... +..+.. ..+..+..
T Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 222 (366)
T d1hz4a_ 143 LWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIY 222 (366)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH
T ss_pred HHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence 77778888888877776654322 12345556666677778887777777665432 111111 11111111
Q ss_pred -hhcCChHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCcccc-HHHHHHHHHHHH
Q 006303 300 -VNAHDLKFTLEVYKNMQKLGVM---ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLD-VFTYSTIVKVFA 374 (651)
Q Consensus 300 -~~~~~~~~a~~~~~~m~~~~~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~ 374 (651)
...++.+.|...+......... .....+..+...+...|++++|...++.+..........|+ ...+..+...|.
T Consensus 223 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 302 (366)
T d1hz4a_ 223 WQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 302 (366)
T ss_dssp HHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHH
Confidence 2336777777777665543211 12344556777888888888888888877654333222232 345667777788
Q ss_pred cccCHHHHHHHHHHHHH
Q 006303 375 DAKWWQMALKVKEDMLS 391 (651)
Q Consensus 375 ~~~~~~~a~~~~~~m~~ 391 (651)
..|++++|.+.+++.++
T Consensus 303 ~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 303 QAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH
Confidence 88888888888777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=1.1e-07 Score=90.83 Aligned_cols=308 Identities=12% Similarity=-0.016 Sum_probs=195.3
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHhcCCCCc----HHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh
Q 006303 226 NFVREFGKKRDLVSALRAYDASKKHLSSPN----MYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN 301 (651)
Q Consensus 226 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 301 (651)
.....+...|++++|++.+++..+.....+ ..++..+..+|...|++++|+..|++..+....
T Consensus 17 lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~------------- 83 (366)
T d1hz4a_ 17 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQ------------- 83 (366)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh-------------
Confidence 346677888999999999999887432211 346777888899999999999999877543100
Q ss_pred cCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc---cHHHHHHHHHHHHccc
Q 006303 302 AHDLKFTLEVYKNMQKLGV-MADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL---DVFTYSTIVKVFADAK 377 (651)
Q Consensus 302 ~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~ 377 (651)
.+. ......+..+...+...|++..+...+.............. ....+..+...+...|
T Consensus 84 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 147 (366)
T d1hz4a_ 84 ----------------HDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWA 147 (366)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTT
T ss_pred ----------------hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhc
Confidence 000 01123455566778888999999988888766433221111 1234566777888999
Q ss_pred CHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcC
Q 006303 378 WWQMALKVKEDMLSAG----VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAG--CEPN----SQCCNILLQACVEAC 447 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~--~~~~----~~~~~~ll~~~~~~g 447 (651)
+++.+...+....... .......+......+...++...+...+.+..... .... ...+..+...+...|
T Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (366)
T d1hz4a_ 148 RLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG 227 (366)
T ss_dssp CHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTT
T ss_pred chhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcc
Confidence 9999999988887532 22234556666777888899998888887765531 1111 223555566777888
Q ss_pred ChhHHHHHHHHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh
Q 006303 448 QFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT 527 (651)
Q Consensus 448 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 527 (651)
++++|...++....... ..
T Consensus 228 ~~~~a~~~~~~~~~~~~-------------------------------------------------~~------------ 246 (366)
T d1hz4a_ 228 DKAAAANWLRHTAKPEF-------------------------------------------------AN------------ 246 (366)
T ss_dssp CHHHHHHHHHHSCCCCC-------------------------------------------------TT------------
T ss_pred cHHHHHHHHHHHHHhcc-------------------------------------------------cc------------
Confidence 99988888876543211 00
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMRE----DGMSPD-VVAYTTAIKVCVRSKRLKQA 602 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~----~~~~p~-~~~~~~li~~~~~~g~~~~A 602 (651)
.......+..+...+...|++++|...++++.. .+..|+ ...+..+...|.+.|++++|
T Consensus 247 ----------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 247 ----------------NHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp ----------------CGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred ----------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 011233455566677777777777777777653 233332 34566667777788888888
Q ss_pred HHHHHHHHH----CCCC----CCHHHHHHHHHHHHhcCCHHHHHH
Q 006303 603 FSLFEEMKH----YQIQ----PNLVTYITLLRARSRYGSLHEVQQ 639 (651)
Q Consensus 603 ~~~~~~m~~----~g~~----p~~~~~~~l~~~~~~~g~~~~a~~ 639 (651)
.+.+++..+ .|.. -....+..++..+...++.+++++
T Consensus 311 ~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 311 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence 887776642 2221 122345556666777777666544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=6.9e-08 Score=90.04 Aligned_cols=195 Identities=11% Similarity=0.086 Sum_probs=119.6
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcC-CHHHHHHHHHHHHhCCCcccHHHHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICG-DYMKSRAIYEDLRSQNVTLNIYVFNSLMN 299 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 299 (651)
.+++.+...+.+.+++++|++.++++++. .| +..+|+....++...| ++++|+..++...+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p------------ 109 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------------ 109 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------------
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH------------
Confidence 45666677777888888888888888883 45 4667787777777765 47888888877765521
Q ss_pred hhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCH
Q 006303 300 VNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWW 379 (651)
Q Consensus 300 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 379 (651)
-+..+|..+...+.+.|++++|++.++.+.+. -+.+...|..+...+...|++
T Consensus 110 ----------------------~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~-----dp~n~~a~~~~~~~~~~~~~~ 162 (315)
T d2h6fa1 110 ----------------------KNYQVWHHRRVLVEWLRDPSQELEFIADILNQ-----DAKNYHAWQHRQWVIQEFKLW 162 (315)
T ss_dssp ----------------------TCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCC
T ss_pred ----------------------hhhhHHHHHhHHHHhhccHHHHHHHHhhhhhh-----hhcchHHHHHHHHHHHHHHhh
Confidence 24556666666666666666666666666653 233455666666666666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACANAGL------VEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAF 453 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~------~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 453 (651)
++|+..++++++.++. +...|+.+...+.+.+. +++|+..+.+..+.. +.+...|+.+...+.. ...+++.
T Consensus 163 ~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~ 239 (315)
T d2h6fa1 163 DNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYP 239 (315)
T ss_dssp TTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCH
T ss_pred HHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHH
Confidence 6666666666655322 55555555555444443 456666666666553 3345555555444333 3345555
Q ss_pred HHHHHhh
Q 006303 454 RLFRSWT 460 (651)
Q Consensus 454 ~~~~~~~ 460 (651)
+.++...
T Consensus 240 ~~~~~~~ 246 (315)
T d2h6fa1 240 NLLNQLL 246 (315)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.03 E-value=9e-08 Score=89.23 Aligned_cols=188 Identities=9% Similarity=0.003 Sum_probs=147.2
Q ss_pred cCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 006303 377 KWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLF 456 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 456 (651)
+..++|..+|++.++...+.+...|...+..+.+.|+.+.|..+|+++.+........+|...+..+.+.|+.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34688899999998765555677888888999999999999999999987654444567889999999999999999999
Q ss_pred HHhhhcccccccccccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHH-hhcHHHHHHH
Q 006303 457 RSWTLSKTQVALGEDYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKAC-CTDYYRVKAL 535 (651)
Q Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~-~~~~~~a~~~ 535 (651)
+....... ..+........+... .++.+.|..+
T Consensus 158 ~~al~~~~----------------------------------------------~~~~~~~~~a~~e~~~~~~~~~a~~i 191 (308)
T d2onda1 158 KKAREDAR----------------------------------------------TRHHVYVTAALMEYYCSKDKSVAFKI 191 (308)
T ss_dssp HHHHTSTT----------------------------------------------CCTHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHhCC----------------------------------------------CcHHHHHHHHHHHHHhccCHHHHHHH
Confidence 98765431 133333333333333 3588999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 536 MNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDG-MSPD--VVAYTTAIKVCVRSKRLKQAFSLFEEMKH 611 (651)
Q Consensus 536 ~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 611 (651)
|+.+.+. .+.+...|...++.+.+.|+++.|..+|++..... ..|+ ...|...+.--...|+.+.+.++++++.+
T Consensus 192 ~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 192 FELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 9999885 23467889999999999999999999999998853 3332 46788888888889999999999998864
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=2.1e-07 Score=86.69 Aligned_cols=215 Identities=9% Similarity=0.018 Sum_probs=156.6
Q ss_pred HHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 324 MASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK-WWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 324 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
...++.+...+.+.+.+++|+++++.+.++ -|-+...|+....++...| ++++|+..+++.++.... +..+|.
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l-----nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~ 116 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIEL-----NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWH 116 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 446666777788888899999999999884 2445567888888888776 489999999988876533 788888
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccccccccccCCchhhhhhh
Q 006303 403 SLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQVALGEDYDGNTDRISNM 482 (651)
Q Consensus 403 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 482 (651)
.+...+.+.|++++|+..++++.+.. +.+...|..+..++.+.|++++|++.++++.+.+
T Consensus 117 ~~~~~~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~------------------- 176 (315)
T d2h6fa1 117 HRRVLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED------------------- 176 (315)
T ss_dssp HHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-------------------
T ss_pred HHhHHHHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-------------------
Confidence 88889999999999999999998875 5567888888889999999999999998887653
Q ss_pred hhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHh--------hcHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006303 483 EHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACC--------TDYYRVKALMNEMRTVGLSPNHISWTIL 554 (651)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--------~~~~~a~~~~~~~~~~~~~p~~~~~~~l 554 (651)
+.+...|+.+...+. +..++|...+..+.+... .+...|+.+
T Consensus 177 -----------------------------p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l 226 (315)
T d2h6fa1 177 -----------------------------VRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYL 226 (315)
T ss_dssp -----------------------------TTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHH
T ss_pred -----------------------------CccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHH
Confidence 234555654443332 136788888888877532 266677777
Q ss_pred HHHHhcCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh
Q 006303 555 IDACGGSGNVEGALQILKIMREDGMS-PDVVAYTTAIKVCVR 595 (651)
Q Consensus 555 i~~~~~~g~~~~A~~~~~~~~~~~~~-p~~~~~~~li~~~~~ 595 (651)
...+... ..+++.+.++...+.... .+...+..++..|..
T Consensus 227 ~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~ 267 (315)
T d2h6fa1 227 KGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED 267 (315)
T ss_dssp HHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence 6666554 457788888877763222 245566666666644
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.89 E-value=3.4e-07 Score=85.16 Aligned_cols=186 Identities=13% Similarity=0.087 Sum_probs=108.1
Q ss_pred CCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhc--CChHHHHHHH
Q 006303 235 RDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNA--HDLKFTLEVY 312 (651)
Q Consensus 235 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~--~~~~~a~~~~ 312 (651)
+..++|..+|+...+...+.+...|...+....+.|+++.|..+|+.+.+.........|...+.... ++.+.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 44577888888877654444566777777888888888888888888776543333334555544432 4556666666
Q ss_pred HHHHHCCCCCCHHhHHHHHHH-HHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHH
Q 006303 313 KNMQKLGVMADMASYNILLKA-CCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLS 391 (651)
Q Consensus 313 ~~m~~~~~~~~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~ 391 (651)
++..+.+. .+...|...... +...|+.+.|..+|+.+... .+.+...|...+..+...|+++.|..+|++...
T Consensus 158 ~~al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-----~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~ 231 (308)
T d2onda1 158 KKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-----YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231 (308)
T ss_dssp HHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-----HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 66655431 223333332222 22345666666666666653 233455666666666666666666666666655
Q ss_pred CC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 392 AG-VTP--NTITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 392 ~~-~~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.. ..| ....|...+..-...|+.+.+.++++++.+
T Consensus 232 ~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 232 SGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp SSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred hCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 42 122 133555555555566666666666665544
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=3.6e-08 Score=89.54 Aligned_cols=118 Identities=12% Similarity=-0.039 Sum_probs=84.6
Q ss_pred cchHHHHHHHHHHHHhcCC--CccccchHHHHHHHHhcCCChHHHHHHhhhC----CCCCccHHHHHHHHhhcCCHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRL--PVKELDEEFRIVQLCVNKPDVNLAIRYACIV----PRADILFCNFVREFGKKRDLVSAL 241 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~ 241 (651)
..+.+.++.-+++++.... .+.....+..++..|.+.|++++|...|.+. |.+..+++.++.+|.+.|++++|+
T Consensus 12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~ 91 (259)
T d1xnfa_ 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 91 (259)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence 4566777777777775432 1233445666777888888888888777664 666778888888888888888888
Q ss_pred HHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006303 242 RAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQN 286 (651)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g 286 (651)
+.|+++.+... -+..++..+..+|...|++++|+..|+...+..
T Consensus 92 ~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~ 135 (259)
T d1xnfa_ 92 EAFDSVLELDP-TYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD 135 (259)
T ss_dssp HHHHHHHHHCT-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHh-hhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc
Confidence 88888877432 245677777788888888888888888777653
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.84 E-value=5.9e-07 Score=81.19 Aligned_cols=146 Identities=10% Similarity=-0.083 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHCCC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 306 KFTLEVYKNMQKLGV-MA--DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 306 ~~a~~~~~~m~~~~~-~~--~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
+.++.-+++...... .+ ...+|..+..+|.+.|++++|.+.|++..++ -+-+..+|+.+..+|.+.|++++|
T Consensus 16 e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l-----~p~~~~a~~~lg~~~~~~g~~~~A 90 (259)
T d1xnfa_ 16 EVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI-----RPDMPEVFNYLGIYLTQAGNFDAA 90 (259)
T ss_dssp HHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc-----CCCCHHHHhhhchHHHHHHHHHHh
Confidence 344455555544321 11 2346667788888999999999999998875 244667888899999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 006303 383 LKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRS 458 (651)
Q Consensus 383 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~ 458 (651)
+..|+++.+.... +..++..+..++...|++++|...|+...+.. +.+......+..++.+.+..+....+...
T Consensus 91 ~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (259)
T d1xnfa_ 91 YEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQH 164 (259)
T ss_dssp HHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred hhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999998876432 56678888888889999999999999888774 33444444444445555554444444433
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.84 E-value=1.2e-08 Score=96.82 Aligned_cols=253 Identities=8% Similarity=-0.087 Sum_probs=145.1
Q ss_pred hhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH----HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHH
Q 006303 125 REGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ----RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQL 200 (651)
Q Consensus 125 ~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~ 200 (651)
..+..++|+++++++++ ..|+..........++.... .+...|++++|+..++.++... |++...|..++.+
T Consensus 41 ~~~~~~~al~~~~~~l~--~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~--pk~~~~~~~~~~~ 116 (334)
T d1dcea1 41 AGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWL 116 (334)
T ss_dssp TTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHhhHH
Confidence 34445899999999998 45655322111111111111 1233577899999999998855 7788888887777
Q ss_pred HhcCC--ChHHHHHHhhhC----CCCCccHH-HHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHH
Q 006303 201 CVNKP--DVNLAIRYACIV----PRADILFC-NFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYM 273 (651)
Q Consensus 201 ~~~~~--~~~~A~~~~~~~----~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 273 (651)
+...+ +.++|...+..+ |++...+. .+...+...++++.|+..++.+.+..+ -+..+|+.+..++.+.|+++
T Consensus 117 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~~~~~~~ 195 (334)
T d1dcea1 117 LSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLPQLHPQP 195 (334)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHHHHSCCC
T ss_pred HHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCHH
Confidence 66655 466777666553 44444443 345666677888888888887777432 35677888888888888877
Q ss_pred HHHHHHHHHHhCCCcccH-HHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 274 KSRAIYEDLRSQNVTLNI-YVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 274 ~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
+|...+...... .|+. ..+... ...+..+.+...+....... +++...+..+...+...++.++|...+.+...
T Consensus 196 ~A~~~~~~~~~~--~~~~~~~~~~~--~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 196 DSGPQGRLPENV--LLKELELVQNA--FFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp CSSSCCSSCHHH--HHHHHHHHHHH--HHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHhHHh--HHHHHHHHHHH--HHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 665554433322 1111 011110 11233444555555544432 23344444555555555666666666655543
Q ss_pred hhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Q 006303 353 LEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSA 392 (651)
Q Consensus 353 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 392 (651)
. .+.+...+..+..+|...|++++|.+.++++.+.
T Consensus 271 ~-----~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 271 E-----NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp T-----CHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred h-----CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 1 1223345555666666666666666666666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.73 E-value=3.5e-08 Score=93.41 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=150.0
Q ss_pred hHHHHHHHHHHHHhcCCCccccchHHHHHHHHh---cC-------CChHHHHHHhhhC----CCCCccHHHHHHHHhhcC
Q 006303 170 EVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV---NK-------PDVNLAIRYACIV----PRADILFCNFVREFGKKR 235 (651)
Q Consensus 170 ~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~-------~~~~~A~~~~~~~----~~~~~~~~~l~~~~~~~g 235 (651)
..++|+++++++++.. |++..+|......+. .. +.+.+|+.+++.+ |++..++..+...+...+
T Consensus 44 ~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~ 121 (334)
T d1dcea1 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLP 121 (334)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhc
Confidence 3489999999998855 777777765443332 22 2345666655443 566666666666665554
Q ss_pred --CHHHHHHHHHHHHhcCCCCcHHhHH-HHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhh--cCChHHHHH
Q 006303 236 --DLVSALRAYDASKKHLSSPNMYICR-TIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVN--AHDLKFTLE 310 (651)
Q Consensus 236 --~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~--~~~~~~a~~ 310 (651)
++++|+..++++.+... ++...+. .....+...+.+++|+..++.+.+..+. +...|+.+-.++ .|++++|..
T Consensus 122 ~~~~~~a~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~ 199 (334)
T d1dcea1 122 EPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (334)
T ss_dssp SCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhCc-hhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHH
Confidence 46777777777776432 2344443 3445666677778888777777666432 344444443332 244444333
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDML 390 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 390 (651)
.+...... .|+ ...+...+...+..+++...+...... -+++...+..+...+...+++++|...+.+..
T Consensus 200 ~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 269 (334)
T d1dcea1 200 QGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLG-----RAEPLFRCELSVEKSTVLQSELESCKELQELE 269 (334)
T ss_dssp CCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHS-----CCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHh-----CcchhhHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222111 011 112223344556666666666665542 23344455666667777788888888887776
Q ss_pred HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 006303 391 SAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPN-SQCCNILLQAC 443 (651)
Q Consensus 391 ~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~ 443 (651)
.... .+..++..+..++.+.|+.++|.+.++++.+.. |+ ...|..+...+
T Consensus 270 ~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld--P~~~~y~~~L~~~~ 320 (334)
T d1dcea1 270 PENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAVD--PMRAAYLDDLRSKF 320 (334)
T ss_dssp TTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHH
T ss_pred hhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--cccHHHHHHHHHHH
Confidence 5532 245667777778888888888888888887763 43 33455444433
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.51 E-value=2.8e-06 Score=77.98 Aligned_cols=182 Identities=12% Similarity=-0.021 Sum_probs=120.2
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhc---CChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSE---GNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPL 147 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~ 147 (651)
...|...+..|...|++++|+..|+++.... ..+.. ....+..++..|.+.|++++|++.+++..+. .++
T Consensus 37 a~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~-----~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~--~~~ 109 (290)
T d1qqea_ 37 ADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----AGNTYVEAYKCFKSGGNSVNAVDSLENAIQI--FTH 109 (290)
T ss_dssp HHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHH-----HHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH--hhh
Confidence 5679999999999999999999999998752 12221 2566788889999999999999999988774 121
Q ss_pred ccccchhhHHHHHHHHHH-hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHH
Q 006303 148 ELFDGSGFKLLKNECQRL-LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCN 226 (651)
Q Consensus 148 ~~~~~~~~~~l~~~~~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 226 (651)
..........+......+ ...|++++|++.+++..... ...++...+ ..++..
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~----------------~~~~~~~~~----------~~~~~~ 163 (290)
T d1qqea_ 110 RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWY----------------AQDQSVALS----------NKCFIK 163 (290)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH----------------HHTTCHHHH----------HHHHHH
T ss_pred cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHH----------------HhcCchhhh----------hhHHHH
Confidence 111112223333333333 23588888888887765321 011111110 145667
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHhcCCCCcH------HhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 227 FVREFGKKRDLVSALRAYDASKKHLSSPNM------YICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 227 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
++..|...|++++|+..|+++......... ..+...+..+...|+++.|...++...+.
T Consensus 164 la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~ 228 (290)
T d1qqea_ 164 CADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE 228 (290)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC
T ss_pred HHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 888889999999999999888764322111 12334455566778899998888888765
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.42 E-value=1.1e-05 Score=73.86 Aligned_cols=209 Identities=10% Similarity=-0.027 Sum_probs=134.0
Q ss_pred cHHHHHHHHhhcCCHHHHHHHHHHHHhc----CCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 223 LFCNFVREFGKKRDLVSALRAYDASKKH----LSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 223 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
.|......|...|++++|.+.|.+..+. +-.+ -..+|..+..+|.+.|++++|++.++...+.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~------------ 106 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI------------ 106 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHH------------
Confidence 3455677888888888888888877652 1111 2457888888899999999998888765432
Q ss_pred HHhhcCChHHHHHHHHHHHHCCC-CCCHHhHHHHHHHHH-hcCCHHHHHHHHHHHHHhhhcCCccc-cHHHHHHHHHHHH
Q 006303 298 MNVNAHDLKFTLEVYKNMQKLGV-MADMASYNILLKACC-LAGNTVLAQEIYGEVKHLEAKGVLKL-DVFTYSTIVKVFA 374 (651)
Q Consensus 298 l~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~ 374 (651)
+.. .|. .....++..+...|. ..|++++|++.|++..++......++ -..++..+...|.
T Consensus 107 --------------~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~ 169 (290)
T d1qqea_ 107 --------------FTH---RGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKA 169 (290)
T ss_dssp --------------HHH---TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------hhh---cccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHH
Confidence 111 110 011334555566664 46899999999988876543321122 2345778889999
Q ss_pred cccCHHHHHHHHHHHHHCCCCCC-----H-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHH
Q 006303 375 DAKWWQMALKVKEDMLSAGVTPN-----T-ITWSSLINACANAGLVEQAMHLFEEMLQAGCE-PN---SQCCNILLQACV 444 (651)
Q Consensus 375 ~~~~~~~a~~~~~~m~~~~~~~~-----~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-~~---~~~~~~ll~~~~ 444 (651)
..|++++|...|+++........ . ..+...+.++...|+++.|...+++..+.... ++ ......++.++.
T Consensus 170 ~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~ 249 (290)
T d1qqea_ 170 LDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVN 249 (290)
T ss_dssp HTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHH
T ss_pred HcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHH
Confidence 99999999999999887532211 1 12344555677889999999999988765321 11 224455666665
Q ss_pred h--cCChhHHHHHHHHhh
Q 006303 445 E--ACQFDRAFRLFRSWT 460 (651)
Q Consensus 445 ~--~g~~~~a~~~~~~~~ 460 (651)
. .+.+++|+..|+++.
T Consensus 250 ~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 250 EGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp TTCTTTHHHHHHHHTTSS
T ss_pred hcCHHHHHHHHHHHHHHh
Confidence 5 234677777776543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=2e-05 Score=66.62 Aligned_cols=119 Identities=11% Similarity=-0.012 Sum_probs=88.5
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHH
Q 006303 303 HDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMA 382 (651)
Q Consensus 303 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 382 (651)
++++.|++.|.++ .+|++.+|..+..+|...|++++|++.|++..++ -+-+...|..+..+|.+.|++++|
T Consensus 19 ~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l-----dp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 19 KDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-----DKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp TCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHH-----hhhhhhhHHHHHHHHHhhccHHHH
Confidence 5566666655543 2467778888889999999999999999998875 244567888888899999999999
Q ss_pred HHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006303 383 LKVKEDMLSAGVT--------------P-NTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (651)
Q Consensus 383 ~~~~~~m~~~~~~--------------~-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 430 (651)
+..|++.+..... . ...++..+..++.+.|++++|.+.|....+....
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999888753110 0 1245667777888899999999998888766433
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.29 E-value=2.1e-05 Score=64.35 Aligned_cols=122 Identities=11% Similarity=0.093 Sum_probs=95.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLIN 406 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 406 (651)
+......|.+.|++++|...|+++.++ .+.+...|..+..+|...|++++|...|+++++.. +-+..+|..+..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~-----~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~ 86 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIEL-----NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAA 86 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhcccc-----chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHH
Confidence 344566788999999999999999985 35567789999999999999999999999999875 337789999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHH
Q 006303 407 ACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA--CVEACQFDRAFRL 455 (651)
Q Consensus 407 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~g~~~~a~~~ 455 (651)
++...|++++|...+++..+.. +-+...+..+..+ ..+.+.++++...
T Consensus 87 ~~~~~g~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 87 SNMALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999875 3345555444333 2333445555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.28 E-value=2e-05 Score=60.33 Aligned_cols=94 Identities=19% Similarity=0.063 Sum_probs=78.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.-...+.+.|++++|+..|++..+. -+.+...|..+..+|...|++++|+..+.+..+.+ +.+...|..+..++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~ 81 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKL-----DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 81 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc-----CCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHH
Confidence 3456778889999999999998874 35567788889999999999999999999988775 34788888999999
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006303 409 ANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~~~~ 428 (651)
...|++++|+..|++..+..
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 82 EFLNRFEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHccCHHHHHHHHHHHHHhC
Confidence 99999999999999988764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=3.5e-05 Score=65.11 Aligned_cols=130 Identities=17% Similarity=0.068 Sum_probs=81.3
Q ss_pred HHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHH
Q 006303 228 VREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKF 307 (651)
Q Consensus 228 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~ 307 (651)
...+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++..+..
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld--------------------- 66 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD--------------------- 66 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh---------------------
Confidence 445566677777777766542 2556666677777777777777777777665541
Q ss_pred HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCC----------cccc-HHHHHHHHHHHHcc
Q 006303 308 TLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGV----------LKLD-VFTYSTIVKVFADA 376 (651)
Q Consensus 308 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----------~~~~-~~~~~~l~~~~~~~ 376 (651)
+.+...|..+..++.+.|++++|.+.|++.....+... .+++ ..++..+..++.+.
T Consensus 67 -------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~ 133 (192)
T d1hh8a_ 67 -------------KHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKK 133 (192)
T ss_dssp -------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHT
T ss_pred -------------hhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHC
Confidence 22456666677777777777777777766654211100 0111 23455667778888
Q ss_pred cCHHHHHHHHHHHHHCCCC
Q 006303 377 KWWQMALKVKEDMLSAGVT 395 (651)
Q Consensus 377 ~~~~~a~~~~~~m~~~~~~ 395 (651)
|++++|.+.+.........
T Consensus 134 ~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 134 EEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp TCHHHHHHHHHHHHTTCCS
T ss_pred CCHHHHHHHHHHHHhcCCC
Confidence 8888888888887765433
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=6.8e-06 Score=63.13 Aligned_cols=89 Identities=11% Similarity=0.082 Sum_probs=57.6
Q ss_pred HHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHH
Q 006303 164 RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRA 243 (651)
Q Consensus 164 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 243 (651)
.+...|++++|+..|++.+... |.+ ..+|..+..+|...|++++|+..
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~--p~~------------------------------~~~~~~~a~~~~~~~~~~~A~~~ 59 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD--PHN------------------------------HVLYSNRSAAYAKKGDYQKAYED 59 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--TTC------------------------------HHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC--Ccc------------------------------hhhhhcccccccccccccccchh
Confidence 3444788888888888887744 444 35555566666666666666666
Q ss_pred HHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006303 244 YDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQ 285 (651)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 285 (651)
++...+.+. .+...|..+..++...|++++|+..|+...+.
T Consensus 60 ~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 60 GCKTVDLKP-DWGKGYSRKAAALEFLNRFEEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hhhHHHhcc-chhhHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 666665432 35556666666666666666666666666654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.20 E-value=0.0017 Score=57.71 Aligned_cols=224 Identities=11% Similarity=0.024 Sum_probs=140.8
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCcccHHHHHHH
Q 006303 222 ILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGI----CGDYMKSRAIYEDLRSQNVTLNIYVFNSL 297 (651)
Q Consensus 222 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~g~~~~~~~~~~l 297 (651)
..+..|...+.+.+++++|++.|++..+.| +..++..|...|.. ..+...|...+......+...-......+
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~ 79 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNL 79 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccccc
Confidence 455666777777788888888888887754 45556666666665 45777888877777666532111111111
Q ss_pred HHh-h--cCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHH
Q 006303 298 MNV-N--AHDLKFTLEVYKNMQKLGVMADMASYNILLKACCL----AGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIV 370 (651)
Q Consensus 298 l~~-~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~ 370 (651)
... . ..+.+.+...++.....|. ......+...+.. ......+...+..... ..+...+..|.
T Consensus 80 ~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~L~ 149 (265)
T d1ouva_ 80 YYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-------LNDGDGCTILG 149 (265)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------TTCHHHHHHHH
T ss_pred cccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc-------ccccchhhhhh
Confidence 111 1 1366778888887777653 2222333333332 3345666666665543 34666677777
Q ss_pred HHHHc----ccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006303 371 KVFAD----AKWWQMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQA 442 (651)
Q Consensus 371 ~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 442 (651)
..|.. ..+...+...++...+.| +......+...|.. ..+.+.|..+|.+..+.| ++..+..|..+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 77764 456777888888877765 56666666666665 567888999998888876 45566666666
Q ss_pred HHh----cCChhHHHHHHHHhhhccc
Q 006303 443 CVE----ACQFDRAFRLFRSWTLSKT 464 (651)
Q Consensus 443 ~~~----~g~~~~a~~~~~~~~~~~~ 464 (651)
|.+ ..+.++|.+.|++....+.
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g~ 249 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLGA 249 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCcC
Confidence 664 3478889999988766654
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.17 E-value=1.6e-05 Score=68.05 Aligned_cols=99 Identities=10% Similarity=-0.027 Sum_probs=74.2
Q ss_pred CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHH
Q 006303 322 ADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITW 401 (651)
Q Consensus 322 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~ 401 (651)
|+...+......+.+.|++++|+..|+++... .+.+...|..+..+|.+.|++++|+..|++.++... -+..+|
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~-----~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~ 75 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR-----NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAH 75 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHH
Confidence 56666677777888888888888888877764 245666777888888888888888888888776532 256677
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 402 SSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 402 ~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
..+..+|.+.|++++|+..|+++.+
T Consensus 76 ~~lg~~~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 76 FFLGQCQLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7788888888888888888877665
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.05 E-value=2.8e-05 Score=66.56 Aligned_cols=101 Identities=10% Similarity=-0.015 Sum_probs=88.4
Q ss_pred ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006303 361 LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILL 440 (651)
Q Consensus 361 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll 440 (651)
|+...+......|.+.|++++|+..|++.+... +.+...|..+..+|.+.|++++|+..|++.++.. +-+...|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 566677778899999999999999999998875 3488899999999999999999999999998764 44677899999
Q ss_pred HHHHhcCChhHHHHHHHHhhhcc
Q 006303 441 QACVEACQFDRAFRLFRSWTLSK 463 (651)
Q Consensus 441 ~~~~~~g~~~~a~~~~~~~~~~~ 463 (651)
.+|.+.|++++|+..|++.....
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999877543
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.03 E-value=0.0039 Score=55.25 Aligned_cols=224 Identities=12% Similarity=0.001 Sum_probs=149.9
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCHHHHHHHHHHHHHCCCCCCH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWWQMALKVKEDMLSAGVTPNT 398 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~m~~~~~~~~~ 398 (651)
|+..+..|...+.+.+++++|++.|++..+. -+...+..|...|.. ..++..+...+......+ +.
T Consensus 1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~-------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~ 70 (265)
T d1ouva_ 1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL-------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YS 70 (265)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---cc
Confidence 4566777878888899999999999998762 256666667777765 668899999999888765 44
Q ss_pred HHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHhhhccccccccc
Q 006303 399 ITWSSLINACAN----AGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE----ACQFDRAFRLFRSWTLSKTQVALGE 470 (651)
Q Consensus 399 ~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 470 (651)
.....+...+.. ..+.+.|...++...+.|. ......+...+.. ......+...+.....
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~--------- 138 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD--------- 138 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---------
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---------
Confidence 444555544443 4678889999998887763 2223333333332 2334455555544332
Q ss_pred ccCCchhhhhhhhhhccccccCCCCccCCCcccccccccccCCCHHHHHHHHHHHhh------cHHHHHHHHHHHHHcCC
Q 006303 471 DYDGNTDRISNMEHKDKQSITNTPNFVPNSHYSSFDKRFSFKPTTTTYNILMKACCT------DYYRVKALMNEMRTVGL 544 (651)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~------~~~~a~~~~~~~~~~~~ 544 (651)
..+...+..+...+.. +...+...++...+.|
T Consensus 139 -----------------------------------------~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g- 176 (265)
T d1ouva_ 139 -----------------------------------------LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK- 176 (265)
T ss_dssp -----------------------------------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-
T ss_pred -----------------------------------------ccccchhhhhhhhhccCCCcccccccchhhhhcccccc-
Confidence 3344555555555542 5667777888877754
Q ss_pred CCcHHHHHHHHHHHhc----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 006303 545 SPNHISWTILIDACGG----SGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVR----SKRLKQAFSLFEEMKHYQIQ 615 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~ 615 (651)
+......+...|.. ..++++|..+|.+..+.| ++..+..|...|.+ .++.++|.++|++..+.|..
T Consensus 177 --~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 177 --DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp --CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred --ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 45555556555554 568999999999998865 56677777777765 34788899999998877743
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=0.00018 Score=58.44 Aligned_cols=94 Identities=13% Similarity=0.064 Sum_probs=83.3
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEA 446 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 446 (651)
......|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|+++++.. +.+...|..+..+|...
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 344567889999999999999999875 3478899999999999999999999999999885 55778999999999999
Q ss_pred CChhHHHHHHHHhhhc
Q 006303 447 CQFDRAFRLFRSWTLS 462 (651)
Q Consensus 447 g~~~~a~~~~~~~~~~ 462 (651)
|++++|...+++....
T Consensus 92 g~~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 92 GKFRAALRDYETVVKV 107 (159)
T ss_dssp TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 9999999999988764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.01 E-value=3.4e-06 Score=83.87 Aligned_cols=217 Identities=8% Similarity=-0.043 Sum_probs=115.0
Q ss_pred hhhccccCCccchhhhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHH
Q 006303 59 LLSTVRRDLSSRNDYYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKK 138 (651)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~ 138 (651)
+.+++..+|+. ...+..+...+...|++++| |++++.. +|..... . .....+. ...+..+++.+++
T Consensus 9 ~~qA~~l~p~~-a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~------~-~~e~~Lw-~~~y~~~ie~~r~ 74 (497)
T d1ya0a1 9 LRQAEVLKADM-TDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALD------K-KVEQDLW-NHAFKNQITTLQG 74 (497)
T ss_dssp HHHHHHHHGGG-TCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHH------H-THHHHHH-HHHTHHHHHHHHH
T ss_pred HHHHHHcCCCC-HHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHH------H-hHHHHHH-HHHHHHHHHHHHH
Confidence 44555666666 66777788888888888876 8888877 6652111 1 1111111 2235567777777
Q ss_pred HHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhC-
Q 006303 139 LNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIV- 217 (651)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~- 217 (651)
..+....++.. .....+.. + .....+.++.|+..++.... ..|+....+..++..+.+.++.++|...+...
T Consensus 75 ~~k~~~~~~~~---~~~~~~~~-~-l~~a~~~Y~~ai~~l~~~~~--l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al 147 (497)
T d1ya0a1 75 QAKNRANPNRS---EVQANLSL-F-LEAASGFYTQLLQELCTVFN--VDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSC 147 (497)
T ss_dssp HHSCSSCTTTT---HHHHHHHH-H-HHHHHHHHHHHHHHHTC---------------------------------CCHHH
T ss_pred hcccccCccHH---HHHHHHHH-H-HHHHHHHHHHHHHHHHHHHC--CChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHh
Confidence 77643333221 11111111 0 11113566666666555443 34667777888888888888888888766543
Q ss_pred -CCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCC-cHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHH
Q 006303 218 -PRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSP-NMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFN 295 (651)
Q Consensus 218 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~ 295 (651)
+....++..++..+...|++++|+..|++..+. .| +...|+.|...+...|+..+|+..|.+...... |-...+.
T Consensus 148 ~~~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~-~~~~a~~ 224 (497)
T d1ya0a1 148 SYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF-PFPAAST 224 (497)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB-CCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCHHHHH
Confidence 112356777889999999999999999998884 45 567899999999999999999999988876532 3444444
Q ss_pred HHHH
Q 006303 296 SLMN 299 (651)
Q Consensus 296 ~ll~ 299 (651)
.|..
T Consensus 225 nL~~ 228 (497)
T d1ya0a1 225 NLQK 228 (497)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.99 E-value=3.8e-05 Score=58.19 Aligned_cols=87 Identities=11% Similarity=-0.023 Sum_probs=43.2
Q ss_pred HHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 006303 370 VKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF 449 (651)
Q Consensus 370 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 449 (651)
...+.+.|++++|+..|++.+..... +...|..+..++.+.|++++|+..|++..+.. +.+...+..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 33444455555555555555443211 34455555555555555555555555555443 23344455555555555555
Q ss_pred hHHHHHHHH
Q 006303 450 DRAFRLFRS 458 (651)
Q Consensus 450 ~~a~~~~~~ 458 (651)
++|.+.+++
T Consensus 101 ~~A~~~l~~ 109 (112)
T d1hxia_ 101 NAALASLRA 109 (112)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555544
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.95 E-value=5.8e-05 Score=57.10 Aligned_cols=91 Identities=10% Similarity=-0.063 Sum_probs=72.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 329 ILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINAC 408 (651)
Q Consensus 329 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 408 (651)
.+...+.+.|++++|+..|++.... -+-+...|..+..++.+.|++++|+..|++.++.. +.+...|..+..+|
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y 94 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQK-----EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 94 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhccc-----ccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHH
Confidence 4566777888999999999888874 23357788888888888999999999998888764 33678888888888
Q ss_pred HhcCCHHHHHHHHHHHH
Q 006303 409 ANAGLVEQAMHLFEEML 425 (651)
Q Consensus 409 ~~~g~~~~a~~~~~~~~ 425 (651)
...|+.++|.+.|++.+
T Consensus 95 ~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 95 TNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHh
Confidence 88899999988888753
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.90 E-value=7e-05 Score=57.42 Aligned_cols=96 Identities=11% Similarity=0.035 Sum_probs=76.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHccc---CHHHHHHHHHHHHHCCCCCC-HHHHHH
Q 006303 328 NILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAK---WWQMALKVKEDMLSAGVTPN-TITWSS 403 (651)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~m~~~~~~~~-~~~~~~ 403 (651)
..+++.+...+++++|++.|+..... -+.+..++..+..++.+.+ ++++|+.+|+++...+..|+ ..++..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~-----~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~ 77 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAA-----GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH-----SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhh-----CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHH
Confidence 45778888889999999999999874 2556788888888888654 55679999999887654443 246788
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 006303 404 LINACANAGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 404 ll~~~~~~g~~~~a~~~~~~~~~~~ 428 (651)
+..+|.+.|++++|.+.|+++++..
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhC
Confidence 8999999999999999999999864
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.90 E-value=0.0062 Score=55.30 Aligned_cols=50 Identities=2% Similarity=-0.011 Sum_probs=35.6
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006303 553 ILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSL 605 (651)
Q Consensus 553 ~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~ 605 (651)
-++..+-+.+++.....+++...+.| +....+++...|...++++.-.+.
T Consensus 253 r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~ 302 (336)
T d1b89a_ 253 RAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTS 302 (336)
T ss_dssp HHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHH
Confidence 34555667778888888888777654 346788999999999986554333
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.85 E-value=2.7e-05 Score=77.21 Aligned_cols=42 Identities=7% Similarity=-0.056 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHH
Q 006303 89 EFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNE 141 (651)
Q Consensus 89 ~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~ 141 (651)
+|++.|+++.+. +|+. .+++..++..+..+|++++| |++++.
T Consensus 4 eA~q~~~qA~~l--~p~~------a~a~~~la~~~~~~~~l~ea---ye~~i~ 45 (497)
T d1ya0a1 4 QSAQYLRQAEVL--KADM------TDSKLGPAEVWTSRQALQDL---YQKMLV 45 (497)
T ss_dssp HHHHHHHHHHHH--HGGG------TCSSSCSSSSHHHHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHc--CCCC------HHHHhhHHHHHHHHchHHHH---HHHHHH
Confidence 688899998887 6663 23334556667788888775 677765
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.81 E-value=0.00023 Score=58.78 Aligned_cols=134 Identities=7% Similarity=-0.045 Sum_probs=92.8
Q ss_pred ccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHH--HHHHhhhCCCCCcc
Q 006303 146 PLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNL--AIRYACIVPRADIL 223 (651)
Q Consensus 146 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--A~~~~~~~~~~~~~ 223 (651)
|+..++...|..+.+........|++++|...|.+.+... +.+..... ..+.+.. +.++- +....+
T Consensus 2 ~~~~~D~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l~~~-------~~~~w~~~~r~~l~---~~~~~a 69 (179)
T d2ff4a2 2 PDNTCDLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREW--RGPVLDDL-------RDFQFVEPFATALV---EDKVLA 69 (179)
T ss_dssp CGGGBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CSSTTGGG-------TTSTTHHHHHHHHH---HHHHHH
T ss_pred CchhccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cccccccC-------cchHHHHHHHHHHH---HHHHHH
Confidence 3444566677777777777888999999999999988743 11110000 0011110 11110 111256
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCcccHH
Q 006303 224 FCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRS-----QNVTLNIY 292 (651)
Q Consensus 224 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~g~~~~~~ 292 (651)
+..++..+.+.|++++|+..++.+.+... -+...|..++.+|.+.|+.++|++.|+++.+ .|+.|...
T Consensus 70 ~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 70 HTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 77789999999999999999999998532 3788999999999999999999999998744 46666643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.81 E-value=0.00049 Score=56.43 Aligned_cols=120 Identities=13% Similarity=-0.035 Sum_probs=88.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCc-c---------ccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVL-K---------LDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~---------~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 395 (651)
.+......+.+.|++++|+..|.+.......... . .-..+|+.+..+|.+.|++++|+..++..+....
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p- 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS- 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-
Confidence 3445566778888888888888887764221100 0 1134567788899999999999999999998753
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEAC 447 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 447 (651)
.+...|..+..+|...|++++|...|++..+.. +-+..+...+-.+..+.+
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~ 144 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIR 144 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHH
Confidence 388899999999999999999999999999875 335555555555444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.75 E-value=0.014 Score=52.87 Aligned_cols=275 Identities=9% Similarity=0.022 Sum_probs=151.2
Q ss_pred hHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHH
Q 006303 118 SGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRI 197 (651)
Q Consensus 118 ~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l 197 (651)
.++..+.+.|.++.|..+|..+.. +-++...+.+.+++..|.+++.+. .....|..+
T Consensus 19 ~i~~~c~~~~lye~A~~lY~~~~d----------------~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~ 75 (336)
T d1b89a_ 19 QVGDRCYDEKMYDAAKLLYNNVSN----------------FGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEV 75 (336)
T ss_dssp ----------CTTTHHHHHHHTTC----------------HHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHhCCC----------------HHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHH
Confidence 445567789999999999986653 112222344578899998887764 345578888
Q ss_pred HHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHH
Q 006303 198 VQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRA 277 (651)
Q Consensus 198 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 277 (651)
...|.+......|...-......+.....++..|-..|.+++...+++..... -..+...++.++..|++.+. ++
T Consensus 76 ~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~~-~k--- 150 (336)
T d1b89a_ 76 CFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFKP-QK--- 150 (336)
T ss_dssp HHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTCH-HH---
T ss_pred HHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhCh-HH---
Confidence 88888887777664432222233344567888999999999999999987643 23567788888888888653 33
Q ss_pred HHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcC
Q 006303 278 IYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKG 357 (651)
Q Consensus 278 ~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 357 (651)
+.+.+...+..-| .+.+. +...+.+ .|.-++-.|.+.|+++.|..+.-.
T Consensus 151 l~e~l~~~s~~y~--------------~~k~~---~~c~~~~------l~~elv~Ly~~~~~~~~A~~~~i~-------- 199 (336)
T d1b89a_ 151 MREHLELFWSRVN--------------IPKVL---RAAEQAH------LWAELVFLYDKYEEYDNAIITMMN-------- 199 (336)
T ss_dssp HHHHHHHHSTTSC--------------HHHHH---HHHHTTT------CHHHHHHHHHHTTCHHHHHHHHHH--------
T ss_pred HHHHHHhccccCC--------------HHHHH---HHHHHcC------ChHHHHHHHHhcCCHHHHHHHHHH--------
Confidence 3333332111111 11111 1112211 134455566666666665544321
Q ss_pred CccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCH-----------HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 358 VLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNT-----------ITWSSLINACANAGLVEQAMHLFEEMLQ 426 (651)
Q Consensus 358 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 426 (651)
.+++..-....+..+.+..+.+...++.....+. .|+. ..-..++..+.+.++.......++...+
T Consensus 200 -~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~ 276 (336)
T d1b89a_ 200 -HPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQN 276 (336)
T ss_dssp -STTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHT
T ss_pred -cchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 1222222333344444444444444444433332 1111 0123345555566666666667766555
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 006303 427 AGCEPNSQCCNILLQACVEACQFDRAFRLFR 457 (651)
Q Consensus 427 ~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~ 457 (651)
.+ +..+.+++.+.|...++++.-.+..+
T Consensus 277 ~n---~~~vn~al~~lyie~~d~~~l~~~i~ 304 (336)
T d1b89a_ 277 HN---NKSVNESLNNLFITEEDYQALRTSID 304 (336)
T ss_dssp TC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence 44 45789999999999999766544443
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00012 Score=56.02 Aligned_cols=95 Identities=13% Similarity=0.140 Sum_probs=78.1
Q ss_pred HHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006303 367 STIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGL---VEQAMHLFEEMLQAGCEPN-SQCCNILLQA 442 (651)
Q Consensus 367 ~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~ 442 (651)
..+++.+...+++++|.+.|++.+..+ +.+..++..+..++.+.++ +++|+.+|+++...+..|+ ...+..+..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 467888899999999999999999875 3478889899999987655 4569999999887653333 2367788899
Q ss_pred HHhcCChhHHHHHHHHhhhc
Q 006303 443 CVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 443 ~~~~g~~~~a~~~~~~~~~~ 462 (651)
|.+.|++++|++.|+++...
T Consensus 82 y~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHh
Confidence 99999999999999998864
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.74 E-value=0.00011 Score=57.11 Aligned_cols=103 Identities=5% Similarity=-0.059 Sum_probs=78.1
Q ss_pred hhHHHHHhhhccCChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCcccc-cc
Q 006303 73 YYADMASKLAKDGRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLEL-FD 151 (651)
Q Consensus 73 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~-~~ 151 (651)
.+..++..+...|++++|+..|++.++. .|+ ...++.+++..|.+.|++++|+..++++++. .|+.. .+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~--~p~------~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l--~~~~~~~~ 75 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPT------NMTYITNQAAVYFEKGDYNKCRELCEKAIEV--GRENREDY 75 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HHHSTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--Ccc------cHHHHHhHHHHHHHcCchHHHHHHHHHHHHh--CcccHHHH
Confidence 4567788899999999999999999998 666 3556778888999999999999999999884 34322 12
Q ss_pred chhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcC
Q 006303 152 GSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFR 185 (651)
Q Consensus 152 ~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~ 185 (651)
.....++......+...+++++|+..|++.+...
T Consensus 76 ~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 76 RQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 2222344455555666889999999998877643
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.72 E-value=0.00048 Score=53.29 Aligned_cols=104 Identities=12% Similarity=0.124 Sum_probs=78.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-CC-----HH
Q 006303 326 SYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT-PN-----TI 399 (651)
Q Consensus 326 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~-----~~ 399 (651)
.+..+...+...|++++|++.|.+..++ .+.+...+..+..+|.+.|++++|+..++++++.... +. ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~-----~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~ 80 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKEL-----DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAK 80 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 3455777888899999999999998875 2456778888999999999999999999888753211 11 24
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006303 400 TWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCC 436 (651)
Q Consensus 400 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 436 (651)
+|..+...+...+++++|+..|++.... .++....
T Consensus 81 ~~~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 115 (128)
T d1elra_ 81 AYARIGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVL 115 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCHHHH
Confidence 6777778888889999999999887765 3444443
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.72 E-value=0.00059 Score=54.78 Aligned_cols=111 Identities=13% Similarity=-0.016 Sum_probs=79.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-----------cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCC
Q 006303 327 YNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVT 395 (651)
Q Consensus 327 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~ 395 (651)
+..-...+.+.|++.+|+..|.+...........+ ...+|+.+..+|.+.|++++|+..++..++.. +
T Consensus 20 ~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p 98 (153)
T d2fbna1 20 IKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-K 98 (153)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-T
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-c
Confidence 44455667778888888888887765322111111 13456778888899999999999999988775 3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006303 396 PNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNIL 439 (651)
Q Consensus 396 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 439 (651)
.+..+|..+..++...|++++|...|++..+.. +-+..+...+
T Consensus 99 ~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l 141 (153)
T d2fbna1 99 NNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSY 141 (153)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred hhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 478889999999999999999999999988874 2344444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.67 E-value=0.00053 Score=56.55 Aligned_cols=71 Identities=11% Similarity=0.117 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 006303 364 FTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANAGLVEQAMHLFEEMLQ-----AGCEPNSQC 435 (651)
Q Consensus 364 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 435 (651)
..+..+...+...|++++|+..+++++... +-+...|..++.+|.+.|+.++|++.|+++.+ .|+.|+..+
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 456778889999999999999999998875 34888999999999999999999999998744 588888765
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.00068 Score=55.53 Aligned_cols=116 Identities=13% Similarity=0.024 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhhhc-----------CCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCC
Q 006303 328 NILLKACCLAGNTVLAQEIYGEVKHLEAK-----------GVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTP 396 (651)
Q Consensus 328 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~ 396 (651)
......+...|++++|++.|.++.+.... ..-+.....|..+..++.+.|++++|+..+.++++... .
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p-~ 109 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-S 109 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-T
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-h
Confidence 34455667778888888877766432110 00122444677788899999999999999999998753 4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVE 445 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 445 (651)
+...|..+..++.+.|++++|+..|++..+.. +.+......+..+..+
T Consensus 110 ~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 110 NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK 157 (169)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 78899999999999999999999999999875 3455566555554433
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.59 E-value=0.0022 Score=52.34 Aligned_cols=97 Identities=12% Similarity=0.001 Sum_probs=80.0
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCCC-C-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGVT-P-------------NTITWSSLINACANAGLVEQAMHLFEEMLQAGCE 430 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~-------------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 430 (651)
.+......+.+.|++++|+..|.+.+..... + -..+|+.+..+|.+.|++++|+..++..++.. +
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p 93 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-S 93 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-c
Confidence 3455667889999999999999988754111 0 12457778889999999999999999999985 5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 431 PNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 431 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
.++..+..+..+|...|++++|+..|++..+.
T Consensus 94 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 94 NNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 57889999999999999999999999998764
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.57 E-value=0.0017 Score=51.85 Aligned_cols=97 Identities=10% Similarity=-0.077 Sum_probs=79.9
Q ss_pred HHHHHHHHHHcccCHHHHHHHHHHHHHCCC----CCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006303 365 TYSTIVKVFADAKWWQMALKVKEDMLSAGV----TPN-----------TITWSSLINACANAGLVEQAMHLFEEMLQAGC 429 (651)
Q Consensus 365 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~----~~~-----------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~ 429 (651)
.+......+.+.|++.+|+..|.+.+..-. .++ ..+|+.+..+|.+.|++++|++.++..++.+
T Consensus 19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~- 97 (153)
T d2fbna1 19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 97 (153)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-
Confidence 344455678899999999999999886421 111 2367778899999999999999999999886
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhc
Q 006303 430 EPNSQCCNILLQACVEACQFDRAFRLFRSWTLS 462 (651)
Q Consensus 430 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 462 (651)
+.+...|..+..++...|++++|+..|++....
T Consensus 98 p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 98 KNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567889999999999999999999999988764
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.52 E-value=0.0035 Score=50.98 Aligned_cols=133 Identities=15% Similarity=0.087 Sum_probs=94.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-----------cHHHHHHHHHHHHcccCHHHHHHHHHHHHHCC
Q 006303 325 ASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-----------DVFTYSTIVKVFADAKWWQMALKVKEDMLSAG 393 (651)
Q Consensus 325 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~ 393 (651)
..+......+.+.|++.+|...|+......... ... ....|+.+..+|.+.|++++|+..++..+...
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~-~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~ 94 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEME-YGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 94 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC-CSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-hccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence 345556778888999999999998877543211 111 12346667888999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh-hHHHHHHHHhh
Q 006303 394 VTPNTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQF-DRAFRLFRSWT 460 (651)
Q Consensus 394 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~-~~a~~~~~~~~ 460 (651)
+.+...|..+..++...|++++|...|.++.+.. +.+......+-.+..+.+.. +...++|..|-
T Consensus 95 -p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f 160 (168)
T d1kt1a1 95 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKKAKEHNERDRRTYANMF 160 (168)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 4488899999999999999999999999999875 34555555554444444333 23444544443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.36 E-value=0.0017 Score=52.95 Aligned_cols=80 Identities=8% Similarity=-0.092 Sum_probs=63.0
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWS 402 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 402 (651)
+...|..+..++.+.|++++|+..+..+.++ -+.+...|..+..+|...|++++|+..|++.++... .+.....
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~-----~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p-~n~~~~~ 149 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI-----DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQA 149 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhh-----hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHH
Confidence 4556777888999999999999999999874 245677899999999999999999999999998642 2555555
Q ss_pred HHHHHH
Q 006303 403 SLINAC 408 (651)
Q Consensus 403 ~ll~~~ 408 (651)
.+..+.
T Consensus 150 ~l~~~~ 155 (169)
T d1ihga1 150 ELLKVK 155 (169)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.35 E-value=0.016 Score=46.78 Aligned_cols=129 Identities=12% Similarity=-0.022 Sum_probs=85.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 006303 258 ICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNMQKLGVMADMASYNILLKACCLA 337 (651)
Q Consensus 258 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 337 (651)
.+......+.+.|++++|+..|...... +................+ ....|+.+..+|.+.
T Consensus 17 ~~~e~G~~~~~~~~~~~A~~~Y~~al~~------------~~~~~~~~~~~~~~~~~~-------~~~~~~Nla~~~~~l 77 (168)
T d1kt1a1 17 IVKEKGTVYFKGGKYVQAVIQYGKIVSW------------LEMEYGLSEKESKASESF-------LLAAFLNLAMCYLKL 77 (168)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------------HTTCCSCCHHHHHHHHHH-------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------------HHHhhccchhhhhhcchh-------HHHHHHhHHHHHHHh
Confidence 3445566677788888888888765432 000001001111111111 134567788889999
Q ss_pred CCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 006303 338 GNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFADAKWWQMALKVKEDMLSAGVTPNTITWSSLINACANA 411 (651)
Q Consensus 338 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 411 (651)
|++++|+..++.+..+ -+.+...|..+..+|...|++++|...|++++...+ .+......+-....+.
T Consensus 78 ~~~~~Ai~~~~~al~l-----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~~~ 145 (168)
T d1kt1a1 78 REYTKAVECCDKALGL-----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQKKA 145 (168)
T ss_dssp TCHHHHHHHHHHHHHH-----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhc-----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHH
Confidence 9999999999999885 356778899999999999999999999999998642 3555555544443333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.24 E-value=0.00034 Score=55.52 Aligned_cols=122 Identities=8% Similarity=-0.001 Sum_probs=79.3
Q ss_pred cchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006303 168 SGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDAS 247 (651)
Q Consensus 168 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 247 (651)
.+.+++|+..|+..++.. |.+..++..++.++...+++..+.+ ..+.+++|+..|++.
T Consensus 10 ~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e--------------------~~~~~~~Ai~~~~kA 67 (145)
T d1zu2a1 10 ILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISD--------------------AKQMIQEAITKFEEA 67 (145)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHH--------------------HHHHHHHHHHHHHHH
T ss_pred HccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhH--------------------HHHHHHHHHHHHHHH
Confidence 688999999999999865 8888888888877765444433222 224456777777777
Q ss_pred HhcCCCC-cHHhHHHHHHHHHhcC-----------CHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHHHHHHH
Q 006303 248 KKHLSSP-NMYICRTIIDVCGICG-----------DYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLEVYKNM 315 (651)
Q Consensus 248 ~~~~~~~-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~~~~~m 315 (651)
++. .| +..+|..+..+|...| .+++|.+.|+...+. .|+...+..-+..+ ..+.+++.+.
T Consensus 68 l~l--~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----~ka~~~~~e~ 139 (145)
T d1zu2a1 68 LLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----AKAPQLHAEA 139 (145)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----HTHHHHHHHH
T ss_pred HHh--cchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----HHHHHHHHHH
Confidence 763 34 4667777777776544 356777777777765 45555555555444 3345555555
Q ss_pred HHCC
Q 006303 316 QKLG 319 (651)
Q Consensus 316 ~~~~ 319 (651)
.+.|
T Consensus 140 ~k~~ 143 (145)
T d1zu2a1 140 YKQG 143 (145)
T ss_dssp HHSS
T ss_pred HHHh
Confidence 5544
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.11 E-value=0.002 Score=50.82 Aligned_cols=97 Identities=6% Similarity=-0.075 Sum_probs=61.2
Q ss_pred HhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCcccHHHHHHHHHhhcCChHHHHH
Q 006303 231 FGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDLRSQNVTLNIYVFNSLMNVNAHDLKFTLE 310 (651)
Q Consensus 231 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~~~~a~~ 310 (651)
|-+.+.+++|++.|+...+..+ .+..++..+..++...+++..+.+-... +++|+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P-~~~~~~~~~g~~l~~~~~~~~~~e~~~~-----------------------~~~Ai~ 62 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQM-----------------------IQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHH-----------------------HHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCC-cchHHHHHHHHHHHHhhhhhhhhHHHHH-----------------------HHHHHH
Confidence 4566778999999999988432 3677888888888766655444433222 244566
Q ss_pred HHHHHHHCCCCCCHHhHHHHHHHHHhcCC-----------HHHHHHHHHHHHH
Q 006303 311 VYKNMQKLGVMADMASYNILLKACCLAGN-----------TVLAQEIYGEVKH 352 (651)
Q Consensus 311 ~~~~m~~~~~~~~~~~~~~ll~~~~~~g~-----------~~~a~~~~~~~~~ 352 (651)
.|++..+.. +.+..+|..+..+|...|+ +++|.+.|++...
T Consensus 63 ~~~kAl~l~-P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~ 114 (145)
T d1zu2a1 63 KFEEALLID-PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD 114 (145)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc-chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccc
Confidence 666666543 3356677777777765542 4556666666655
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.04 E-value=0.00018 Score=63.69 Aligned_cols=49 Identities=14% Similarity=0.073 Sum_probs=33.2
Q ss_pred hhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHhcCCChHHHHHHhhh
Q 006303 166 LDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCVNKPDVNLAIRYACI 216 (651)
Q Consensus 166 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 216 (651)
.+.|++++|+..+++.++.. |.+...+..++..++..|++++|.+.++.
T Consensus 7 L~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~ 55 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQ 55 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 34699999999999988855 66666555555555555555555555444
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.92 E-value=0.008 Score=47.98 Aligned_cols=100 Identities=17% Similarity=0.133 Sum_probs=55.9
Q ss_pred hHHHH--HHHHHhcCCHHHHHHHHHHHHHhhhcCCccc-------cHHHHHHHHHHHHcccCHHHHHHHHHHHHHC----
Q 006303 326 SYNIL--LKACCLAGNTVLAQEIYGEVKHLEAKGVLKL-------DVFTYSTIVKVFADAKWWQMALKVKEDMLSA---- 392 (651)
Q Consensus 326 ~~~~l--l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~---- 392 (651)
+|..+ ...+...|++++|++.|++..++.....-.. ....|+.+..+|...|++++|...+++.+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 44444 4455667888888888888877542210000 1245666666777777777777666665532
Q ss_pred -CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 393 -GVTPN-----TITWSSLINACANAGLVEQAMHLFEEML 425 (651)
Q Consensus 393 -~~~~~-----~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 425 (651)
...++ ...+..+..+|...|++++|+..|++..
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 11111 1134445556666666666666665554
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.90 E-value=0.0013 Score=58.06 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=15.6
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006303 323 DMASYNILLKACCLAGNTVLAQEIYGEVKH 352 (651)
Q Consensus 323 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 352 (651)
|...+..+...++..|++++|.+.|+...+
T Consensus 29 d~~ar~~La~lL~~~G~~e~A~~~l~~a~~ 58 (264)
T d1zbpa1 29 DASLRSSFIELLCIDGDFERADEQLMQSIK 58 (264)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 444555555555555555555555555544
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.73 E-value=0.012 Score=46.99 Aligned_cols=62 Identities=16% Similarity=0.103 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHC-----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006303 549 ISWTILIDACGGSGNVEGALQILKIMRED-----GMSPD-----VVAYTTAIKVCVRSKRLKQAFSLFEEMK 610 (651)
Q Consensus 549 ~~~~~li~~~~~~g~~~~A~~~~~~~~~~-----~~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~ 610 (651)
..|+.+..+|.+.|++++|...+++.++. ...++ ...|+.+..+|...|++++|++.|++..
T Consensus 56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555555555555555431 11111 1133444555555555555555555554
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.68 E-value=0.0033 Score=45.22 Aligned_cols=82 Identities=10% Similarity=-0.087 Sum_probs=56.7
Q ss_pred HHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccc
Q 006303 113 LEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELD 192 (651)
Q Consensus 113 ~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 192 (651)
.+-+..++..+.+.|++++|+..|++.++.... +.........++-..+..+.+.|++++|+..++++++.. |++..
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~-~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--P~~~~ 81 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDE-GEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--PEHQR 81 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT-TCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhh-hhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC--cCCHH
Confidence 445567788899999999999999999875211 111111223444455556777899999999999999855 66665
Q ss_pred hHHHH
Q 006303 193 EEFRI 197 (651)
Q Consensus 193 ~~~~l 197 (651)
++..+
T Consensus 82 a~~Nl 86 (95)
T d1tjca_ 82 ANGNL 86 (95)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.63 E-value=0.0016 Score=47.03 Aligned_cols=74 Identities=11% Similarity=0.073 Sum_probs=57.7
Q ss_pred hhhhHHHHHhhhccCChHHHHHHHHHHHHhcC-ChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcCCCccc
Q 006303 71 NDYYADMASKLAKDGRLEEFAMIVESVVVSEG-NVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELGVAPLE 148 (651)
Q Consensus 71 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~ 148 (651)
.+.+-.++..+.+.|++.+|+..|++.++... .+... .-...++.+++..+.+.|++++|+..++++++ +.|+.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~--~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~--l~P~~ 79 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEIST--IDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE--LDPEH 79 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCS--SCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccC--ccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH--hCcCC
Confidence 45566889999999999999999999987621 11111 11356788899999999999999999999998 45654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.73 E-value=0.18 Score=38.34 Aligned_cols=15 Identities=20% Similarity=-0.059 Sum_probs=6.6
Q ss_pred CHHHHHHHHHHHHHC
Q 006303 378 WWQMALKVKEDMLSA 392 (651)
Q Consensus 378 ~~~~a~~~~~~m~~~ 392 (651)
+.++|..+|++..+.
T Consensus 110 d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 110 NEKQAVKTFEKACRL 124 (133)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHC
Confidence 344444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.64 E-value=0.57 Score=35.27 Aligned_cols=110 Identities=15% Similarity=0.049 Sum_probs=57.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHhhhcCCccccHHHHHHHHHHHHc----ccCH
Q 006303 304 DLKFTLEVYKNMQKLGVMADMASYNILLKACCLAGNTVLAQEIYGEVKHLEAKGVLKLDVFTYSTIVKVFAD----AKWW 379 (651)
Q Consensus 304 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 379 (651)
++++|.+.|.+..+.| +...+..|.. ....+.++|.+.+++..+. | +...+..|...|.. ..+.
T Consensus 8 d~~~A~~~~~kaa~~g---~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~---g----~~~a~~~Lg~~y~~g~~~~~d~ 75 (133)
T d1klxa_ 8 DLKKAIQYYVKACELN---EMFGCLSLVS--NSQINKQKLFQYLSKACEL---N----SGNGCRFLGDFYENGKYVKKDL 75 (133)
T ss_dssp HHHHHHHHHHHHHHTT---CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT---T----CHHHHHHHHHHHHHCSSSCCCH
T ss_pred CHHHHHHHHHHHHHCC---Chhhhhhhcc--ccccCHHHHHHHHhhhhcc---c----chhhhhhHHHhhhhccccchhh
Confidence 3445555555555544 1122222221 1234556666666665541 1 34444444444433 3456
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006303 380 QMALKVKEDMLSAGVTPNTITWSSLINACAN----AGLVEQAMHLFEEMLQAG 428 (651)
Q Consensus 380 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~ 428 (651)
++|.++|++..+.| +......|...|.. ..+.++|.++|++..+.|
T Consensus 76 ~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 76 RKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 77777777777665 34444555555554 346777777777776665
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.25 E-value=0.2 Score=36.81 Aligned_cols=73 Identities=12% Similarity=-0.033 Sum_probs=55.8
Q ss_pred CccchhhhHHHHHhhhcc---CChHHHHHHHHHHHHhcCChhHHHhhhhHHHHHhHHHHhhhhcChhHHHHHHHHHHHcC
Q 006303 67 LSSRNDYYADMASKLAKD---GRLEEFAMIVESVVVSEGNVSKFASMLSLEMVASGIVKSIREGRIDCVVGVLKKLNELG 143 (651)
Q Consensus 67 ~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~l~~~~~~~ 143 (651)
+..+..+--..+.++.+. .+.++++.+|+.+.+. .|..- .+.+..++..|.+.|++++|...++.+++
T Consensus 31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~--~p~~~-----rd~lY~Lav~yyklgdy~~A~~~~~~~L~-- 101 (124)
T d2pqrb1 31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE--AESRR-----RECLYYLTIGCYKLGEYSMAKRYVDTLFE-- 101 (124)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH--CGGGH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--
T ss_pred CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc--CchhH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHc--
Confidence 444455556666666654 5667999999999987 56432 46777888999999999999999999999
Q ss_pred CCccc
Q 006303 144 VAPLE 148 (651)
Q Consensus 144 ~~~~~ 148 (651)
+.|+.
T Consensus 102 ieP~n 106 (124)
T d2pqrb1 102 HERNN 106 (124)
T ss_dssp HCTTC
T ss_pred cCCCc
Confidence 56754
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=92.19 E-value=1.5 Score=31.86 Aligned_cols=68 Identities=10% Similarity=-0.009 Sum_probs=56.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHhhhcccc
Q 006303 397 NTITWSSLINACANAGLVEQAMHLFEEMLQAGCEPNSQCCNILLQACVEACQFDRAFRLFRSWTLSKTQ 465 (651)
Q Consensus 397 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 465 (651)
+...+..-++.+.++|+-++-.++++.+.+.+ ++++...-.+..+|-+.|...++-+++.+.-+.+..
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 44556777888899999999999999987755 888888999999999999999999999988777653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.76 E-value=7.8 Score=35.98 Aligned_cols=138 Identities=12% Similarity=0.072 Sum_probs=77.7
Q ss_pred HHHHhhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHH--HHhhcchHHHHHHHHHHHHhcCCCccccchHHH
Q 006303 119 GIVKSIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQ--RLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFR 196 (651)
Q Consensus 119 ~~~~~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 196 (651)
.+....+.|+..++..+...+.+..+.| ++.... .........+...++++- ...|........
T Consensus 12 ~a~~a~~~~~~~~~~~~~~~L~dypL~p-----------Yl~~~~l~~~~~~~~~~~i~~Fl~~~---p~~P~~~~lr~~ 77 (450)
T d1qsaa1 12 QIKQAWDNRQMDVVEQMMPGLKDYPLYP-----------YLEYRQITDDLMNQPAVTVTNFVRAN---PTLPPARTLQSR 77 (450)
T ss_dssp HHHHHHHTTCHHHHHHHSGGGTTSTTHH-----------HHHHHHHHHTGGGCCHHHHHHHHHHC---TTCHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhhhcCCCCHH-----------HHHHHHHHhccccCCHHHHHHHHHHC---CCChhHHHHHHH
Confidence 3455678889988887777664321111 111111 111223444444444431 111211122223
Q ss_pred HHHHHhcCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCC
Q 006303 197 IVQLCVNKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGD 271 (651)
Q Consensus 197 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 271 (651)
-...+.+.+++......+...|.+...-+....+....|+...|.+.+..+-..|. .....+..+...+.+.|.
T Consensus 78 ~l~~L~~~~~w~~~~~~~~~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~~~ 151 (450)
T d1qsaa1 78 FVNELARREDWRGLLAFSPEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGK 151 (450)
T ss_dssp HHHHHHHTTCHHHHHHHCCSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTC
T ss_pred HHHHHHhccCHHHHHHhccCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-CCchHHHHHHHHHHhcCC
Confidence 35567778888888877777676666667788888888999888888877766543 223344555555544443
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.80 E-value=1.9 Score=31.50 Aligned_cols=74 Identities=9% Similarity=-0.064 Sum_probs=53.3
Q ss_pred CCcHHHHHHHHHHHhcCC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006303 545 SPNHISWTILIDACGGSG---NVEGALQILKIMREDGMSPDV-VAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVT 620 (651)
Q Consensus 545 ~p~~~~~~~li~~~~~~g---~~~~A~~~~~~~~~~~~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 620 (651)
.|...|--...+++.+.. +.++++.+++++.+.+ +.+. ..+-.|..+|.+.|++++|.++++.+.+. .|+..-
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i--eP~n~q 108 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH--ERNNKQ 108 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHH
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc--CCCcHH
Confidence 355666666777777664 4568999999988743 2233 46667888899999999999999999864 576543
Q ss_pred H
Q 006303 621 Y 621 (651)
Q Consensus 621 ~ 621 (651)
.
T Consensus 109 A 109 (124)
T d2pqrb1 109 V 109 (124)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.65 E-value=2.3 Score=29.14 Aligned_cols=65 Identities=14% Similarity=0.221 Sum_probs=50.7
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006303 563 NVEGALQILKIMREDGMSPDVVAYTTAIKVCVRSKRLKQAFSLFEEMKHYQIQPNLVTYITLLRAR 628 (651)
Q Consensus 563 ~~~~A~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l~~~~ 628 (651)
+.=++.+-++.+....+.|++....+.+++|.|.+++..|.++|+-.+.. +.++...|..+++-+
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilqel 85 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQEL 85 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHHHH
Confidence 44466777777777888999999999999999999999999999988743 334566777776643
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.45 E-value=3.1 Score=28.48 Aligned_cols=63 Identities=21% Similarity=0.388 Sum_probs=49.4
Q ss_pred cHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhcCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006303 528 DYYRVKALMNEMRTVGLSPNHISWTILIDACGGSGNVEGALQILKIMREDGMSPDVVAYTTAIK 591 (651)
Q Consensus 528 ~~~~a~~~~~~~~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~p~~~~~~~li~ 591 (651)
+.-++.+-++.+....+.|.+.+..+-+.+|.+.+++..|.++|+-.+.+. .++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHHH
Confidence 456777788888888899999999999999999999999999999887642 223445655543
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=83.39 E-value=6.3 Score=28.47 Aligned_cols=141 Identities=9% Similarity=0.064 Sum_probs=95.2
Q ss_pred hhhhcChhHHHHHHHHHHHcCCCccccccchhhHHHHHHHHHHhhcchHHHHHHHHHHHHhcCCCccccchHHHHHHHHh
Q 006303 123 SIREGRIDCVVGVLKKLNELGVAPLELFDGSGFKLLKNECQRLLDSGEVEMFVGLMEVLEEFRLPVKELDEEFRIVQLCV 202 (651)
Q Consensus 123 ~~~~g~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (651)
+.-.|..++..+++.+..... +-. -++.++ +...+.-+-+-..++++.+-..- .. .
T Consensus 12 ~ildG~ve~Gveii~k~~~ss--~~~-----E~NW~I---CNiidt~dC~~v~~~Ld~IG~~F-Dl-------------s 67 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKSS--TKS-----EYNWFI---CNLLESIDCRYMFQVLDKIGSYF-DL-------------D 67 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS--CHH-----HHTHHH---HHHHHHCCHHHHHHHHHHHGGGS-CG-------------G
T ss_pred HHHhhhHHhHHHHHHHHcccC--Ccc-----ccceee---eecccccchHHHHHHHHHHhhhc-Cc-------------h
Confidence 456788888888888877632 111 122222 12223345555666666654321 11 1
Q ss_pred cCCChHHHHHHhhhCCCCCccHHHHHHHHhhcCCHHHHHHHHHHHHhcCCCCcHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 006303 203 NKPDVNLAIRYACIVPRADILFCNFVREFGKKRDLVSALRAYDASKKHLSSPNMYICRTIIDVCGICGDYMKSRAIYEDL 282 (651)
Q Consensus 203 ~~~~~~~A~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 282 (651)
..++.......+-.+..........++.+.++|+-+.-.+++.++.+. -++++...-.+..+|.+.|+..++.+++.+.
T Consensus 68 ~C~Nlk~vv~C~~~~n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~A 146 (161)
T d1wy6a1 68 KCQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 146 (161)
T ss_dssp GCSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 234444445555555555677777889999999999999999998774 4578888889999999999999999999999
Q ss_pred HhCCCc
Q 006303 283 RSQNVT 288 (651)
Q Consensus 283 ~~~g~~ 288 (651)
.+.|++
T Consensus 147 Ce~G~K 152 (161)
T d1wy6a1 147 CKKGEK 152 (161)
T ss_dssp HHTTCH
T ss_pred HHHhHH
Confidence 999875
|