Citrus Sinensis ID: 006305

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-
Protein Sequence
MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEGKNGGESWNLQATEFTFVA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccHHcHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccHHcccHHHHHHHHHHHcccccHHHHHccHHHcccccccccHHHHHHccccHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEcccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccccccccEEcccccEEcc
Coil and Loop (DISEMBL)
mdrrswlwrrksgggaaggetessgsvsslserfsddqthssqsseatskappldevvnDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRkaspntenksftpssiyvgsftdsqsdngerllgnetdnckisdsevnecepnsstswasalaiepdknvkavgrnvmvpsvdinlMDDFLEMERlaalpdtesrsfcvevgpasdqpnadeSSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLddflidsekplehtgegknggeswnlqateftfva
Flexible Loop (DISEMBL)
mdrrswlwrrksgggaaggetessgsVSSLSERFSddqthssqsseatskappldeVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIqetvskqnleweskKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAvvrkaspntenksftpssiyvgsFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAiepdknvkavgrnVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPasdqpnadesSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEeevksakskkeaaesRLRAVEAEMETLrskvisledevekeralseenianfqkskdELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDsekplehtgegknggeswnlqaTEFTFVA
Low Complexity Region (SEG)
MDRRSWLWRRKsgggaaggetessgsvsslseRFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVrqlrqareeqeqriqeTVSKQNleweskkselesklVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAlklellslvkelelRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAeleeeleNMRAEKSELEMDLKESQRRLETSQNqlkeaelkleeletqlaFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANkskqaaeeevksakskkeaaesRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEGKNGGESWNLQATEFTFVA
Disordered region (IsUnstruct)
***********************************************************************ALLN************************************************************************************************************************************LKLELLSLVKELELRIVER*******************KLAKVEAECLRLKAVV**************************************************************LAI***KNVKAVGRNVMVPSVDINLMDDFLEMERLAAL*******FC*****************************************************************************************************************************************************************************************************EVKLQYLAG******I***EELAVAASKFAECQKTIASLGRQLRSLVTLDDFLID*****************************
Disordered Region (DISOPRED)
*DRRSWLW**********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************QA**FTF**
Disordered Region (DISEMBL)
MDRRSWLWR********************************************LDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ************ENRVSHLDGALKECVRQL************************KKSELESKLVDLQKK**************DLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISD*************WASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEV**********ESSIKAELEVLIHRTAELEEELE*************************QLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQL*****************************AVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEGKNGGESWNLQATEFTFVA
Disordered Region (DISPRO)
****************************************************PLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP*********S*I*****TDSQSDN*ERLL**********************TSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALP***********************SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDS***********************FTFVA
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxQxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxDLCSKxxxxxxxxxxxxxxxxxxxxxLELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxMKAAIAARGVAESKLSVVxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEGKNGGESWNLQATEFTFVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	651	2.2.26 [Sep-21-2011]
Q9MA92	615	Filament-like plant prote	yes	no	0.867	0.918	0.463	1e-125
Q8LLE5	582	Filament-like plant prote	N/A	no	0.780	0.872	0.474	1e-118
Q9SFF4	629	Filament-like plant prote	no	no	0.749	0.775	0.368	5e-70
Q9CAP9	779	Filament-like plant prote	no	no	0.450	0.376	0.460	5e-67
Q0WSY2	982	Filament-like plant prote	no	no	0.437	0.290	0.345	9e-41
O65649	996	Filament-like plant prote	no	no	0.397	0.260	0.381	5e-40
Q9C698	1054	Filament-like plant prote	no	no	0.321	0.198	0.405	6e-35
Q9SLN1	898	Filament-like plant prote	no	no	0.354	0.257	0.341	2e-24

>sp|Q9MA92|FPP3_ARATH Filament-like plant protein 3 OS=Arabidopsis thaliana GN=FPP3 PE=2 SV=2

 Score =  451 bits (1159), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 312/673 (46%), Positives = 411/673 (61%), Gaps = 108/673 (16%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVND 60
           MDRRSWLWRRKS   + G ETES+GSVSS SERFSDDQ   SQS E  SK    +E    
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESTGSVSSHSERFSDDQ--RSQSPELNSKPVTREEEATA 57

Query: 61  SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSA 120
            +K LTE+LSAALLNVS KEDL KQHAKVAEEAVSGWEKAENE + LKQQL A++ K SA
Sbjct: 58  DIKILTERLSAALLNVSLKEDLAKQHAKVAEEAVSGWEKAENEAAALKQQLDASTSKVSA 117

Query: 121 LENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180
           LE+R SHLD ALKECVRQL Q REEQ Q+I+E ++ +  EWE+ KS+LE+++ +LQ +  
Sbjct: 118 LEDRNSHLDSALKECVRQLWQGREEQNQKIEEAINNKCKEWETTKSQLEARIEELQARQD 177

Query: 181 TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
              S    S   DL  KLEA EK+NSALKL+LLS  +E+++R +ERDLST+AAE+ASKQ 
Sbjct: 178 VTTS----SVHEDLYPKLEALEKENSALKLQLLSKSEEVKIRTIERDLSTQAAESASKQQ 233

Query: 241 LESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETD 300
           LE IKKL K+EAEC +L+ +VR+    ++N S   SSI      D+QSD   R+      
Sbjct: 234 LEGIKKLTKLEAECRKLRVMVRR----SDNSSDLKSSI------DNQSDYSGRV------ 277

Query: 301 NCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAA 360
               SD+E+    P+                 K +G++ M  SVDI LMDDFLEME+LAA
Sbjct: 278 --SFSDNEMQ--SPSE----------------KIIGKSSMATSVDIGLMDDFLEMEKLAA 317

Query: 361 LPDTESRSFCVEVGPASDQPNADESSIKAEL----------------------------- 391
           LP +E      E     ++ NA  + +K EL                             
Sbjct: 318 LPHSEPGRKHSESNKELEKSNAHVNQLKHELKTSLRRISELEEKVEMVEVEKLQLEMALN 377

Query: 392 ------EVLIHRTAELEEELENMR---AEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
                 E L  R  E+E +L  M+   AE  ELE+ L ES +++E  Q QL +A++ L E
Sbjct: 378 GSKEQIEALQSRLKEIEGKLSEMKKLEAENQELELLLGESGKQMEDLQRQLNKAQVNLSE 437

Query: 443 LETQLA-------FANKSKQAVEVEMKAAIAARGVAESKLSVVE---AEMKTQLALANKS 492
           LET+ A         N +K+ +E            ++++L   E    E++T L L   +
Sbjct: 438 LETRRAEKLELTMCLNGTKKQLE-----------TSQNRLKETERKLTELQTLLHLTKDA 486

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
           K+AAE+ +K+A  K EA ESRL+ VEAE E+L  K+ SLED  EKERALS ++ +   + 
Sbjct: 487 KEAAEDGLKAANGKTEAIESRLKDVEAEAESLILKIKSLEDVTEKERALSAKHNSKCNEL 546

Query: 553 KDELSKVKQEIELQHEVK--LQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQL 610
           +DE+SK+KQE+E   E +    ++ G     ++ QE+ELAVAASKFAECQ+TIASLG++L
Sbjct: 547 QDEISKLKQELEHHQETEPAPNHIKG----FELKQEKELAVAASKFAECQRTIASLGQRL 602

Query: 611 RSLVTLDDFLIDS 623
           +SL T +DFLI+S
Sbjct: 603 QSLATFEDFLIES 615

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LLE5|FPP_SOLLC Filament-like plant protein (Fragment) OS=Solanum lycopersicum GN=FPP PE=1 SV=1

 Score =  427 bits (1097), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 274/577 (47%), Positives = 359/577 (62%), Gaps = 69/577 (11%)

Query: 79  KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQ 138
           KEDLVKQHAKVAEEA++GWEKAENE++ LKQQL AA Q+N  LE RVSHLDGALKECVRQ
Sbjct: 1   KEDLVKQHAKVAEEAIAGWEKAENEVAVLKQQLDAAVQQNLTLEVRVSHLDGALKECVRQ 60

Query: 139 LRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKL 198
           LRQAR+EQE+ IQ+ ++++N E ES+K+ LE +L+ LQ +++  K+E   S D D+  +L
Sbjct: 61  LRQARDEQEKMIQDAMAEKN-EMESEKTALEKQLLKLQTQVEAGKAEMPTSTDPDILVRL 119

Query: 199 EAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258
           +  EK+N+ALK+EL+S  + LE+R +ERDLST+AAETASKQ LESIKKL K+E EC +L+
Sbjct: 120 KYLEKENAALKIELVSCSEVLEIRTIERDLSTQAAETASKQQLESIKKLTKLEVECRKLQ 179

Query: 259 AVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSST 318
           A+ RK+SP  + +S   SS YV S TDSQSD+GERL   + D  K+S  E  E EP+ S 
Sbjct: 180 AMARKSSPFNDQRSSAVSSFYVDSVTDSQSDSGERLNTVDNDALKMSKLETREYEPSCSN 239

Query: 319 SWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCV--EVG 374
           SWASAL  E D  KN KA+ + +   S++I++MDDFLEME+LAAL +T +++  V  +  
Sbjct: 240 SWASALIAELDQFKNEKAMPKTLAACSIEIDMMDDFLEMEQLAALSETANKTPSVTSDAV 299

Query: 375 PASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLK 434
           P  D PN  E+ + AE   +  R  ELE++LE + AEK+ELE    ESQ  L+ S  QLK
Sbjct: 300 P-HDSPNI-ENPLAAEYNSISQRVVELEQKLEKIEAEKAELENAFNESQDALKVSSLQLK 357

Query: 435 EAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ 494
           E + +LE L+ +L   N+S                                         
Sbjct: 358 ETQTRLEGLQKELDVVNES----------------------------------------- 376

Query: 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554
                       KE  E +L  +E E  T+   + SL+ EVEKE++LS E  A   + ++
Sbjct: 377 ------------KELLEFQLYGMEVEARTMSVNIDSLKTEVEKEKSLSSEMEAKCHELEN 424

Query: 555 ELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLV 614
           +L K  QE E Q        +GSN ELKI QE+ LAVAA K AECQKTIASLG+QL+SL 
Sbjct: 425 DLRKKSQEAEAQQ------TSGSNSELKIKQED-LAVAADKLAECQKTIASLGKQLQSLA 477

Query: 615 TLDDFLIDSEK-PLEHTGEGKNGGESWNLQATEFTFV 650
           TL+DFL D+   P       K GGE W L   E TF 
Sbjct: 478 TLEDFLTDTANLPGGGAVVAKAGGELWKLHVNE-TFT 513

Solanum lycopersicum (taxid: 4081)

>sp|Q9SFF4|FPP2_ARATH Filament-like plant protein 2 OS=Arabidopsis thaliana GN=FPP2 PE=1 SV=1

 Score =  266 bits (679), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 216/586 (36%), Positives = 319/586 (54%), Gaps = 98/586 (16%)

Query: 76  VSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC 135
           + +K++LVKQHAKVAE+AV+GWEKAENE+  LKQ+L+ A+ KN  LE+RVSHLDGALKEC
Sbjct: 13  MDSKDELVKQHAKVAEDAVAGWEKAENEVVELKQKLEDAADKNIVLEDRVSHLDGALKEC 72

Query: 136 VRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLC 195
           VRQLRQ R+EQE+ IQ  V++   E  S  + LE ++++LQK+ + AKSE          
Sbjct: 73  VRQLRQFRDEQEKNIQAAVTESTKELHSANTGLEKRVLELQKEAEAAKSE---------- 122

Query: 196 SKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECL 255
                    N  L+ E L+  ++LE+ ++ERDLST+AAETASKQHL+ IKKLAK+EAEC 
Sbjct: 123 ---------NMMLRREFLTQREDLEIVMIERDLSTQAAETASKQHLDIIKKLAKLEAECR 173

Query: 256 RLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNG-ERLLGNETDNCKISDSEVNECEP 314
           +L+ + +           T SS+      DS SD G ER+ G+ +D              
Sbjct: 174 KLRILAK-----------TSSSLSSNQSVDSHSDGGRERVEGSCSD-------------- 208

Query: 315 NSSTSWASALAI-EPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALP------- 362
               SWAS+  I E D  KN K   R++     S +I+LMDDFLEMERL ALP       
Sbjct: 209 ----SWASSAFISELDQIKNEKGGNRSLQGTTSSTEIDLMDDFLEMERLVALPTETQAKN 264

Query: 363 --DTESRSFCVEVGPASDQPNADESSIKA----------ELEVLIHRTAELEEELENMRA 410
             D    S   ++     + +  E  +K           E+E ++    ELE+ L+ + A
Sbjct: 265 SKDGYELSLMEKLEKIQAEKDDLEREVKCCREAEKRLSLEIEAVVGDKMELEDMLKRVEA 324

Query: 411 EKSELEMDLKESQRRLETSQNQLKEAELKLE-------ELETQLAFANKSKQAVEVEMKA 463
           EK+EL+      + + + S+   +E + KLE       EL++++    ++++   +E++A
Sbjct: 325 EKAELKTSFDVLKDKYQESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEA 384

Query: 464 AIAARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAE 520
            +  +   E +L  +E   AE+K    +     Q +    +  + K EA +  L+     
Sbjct: 385 VVGDKIEMEDELEKMEAEKAELKISFDVIKDQYQESRVCFQEVEMKLEAMKRELKLANES 444

Query: 521 METLRSKVISLEDEVEKERALSE---ENIANFQKSKDELSKVKQEIELQHEVKLQYLAGS 577
                S+V  +E EV KER +S+   E    F++      + K  I+ +           
Sbjct: 445 KTQAESRVTRMEAEVRKERIVSDGLKEKCETFEEELRREIEEKTMIKRE----------- 493

Query: 578 NQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDS 623
             E KI Q E++A AA KFA+CQKTIASLG+QL+SL TL++FLID+
Sbjct: 494 KVEPKIKQ-EDIATAAGKFADCQKTIASLGKQLQSLATLEEFLIDT 538

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAP9|FPP1_ARATH Filament-like plant protein 1 OS=Arabidopsis thaliana GN=FPP1 PE=2 SV=1

 Score =  256 bits (653), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 159/345 (46%), Positives = 221/345 (64%), Gaps = 52/345 (15%)

Query: 56  EVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAAS 115
           E + DS+KTL EKLSAAL NVSAK+DLVKQH KVAEEAV+GWEKAENE+  LK++L+AA 
Sbjct: 56  EELKDSMKTLAEKLSAALANVSAKDDLVKQHVKVAEEAVAGWEKAENEVVELKEKLEAAD 115

Query: 116 QKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDL 175
            KN  LE+RVSHLDGALKECVRQLRQAR+EQEQRIQ+ V ++  E +S ++ LE+++ + 
Sbjct: 116 DKNRVLEDRVSHLDGALKECVRQLRQARDEQEQRIQDAVIERTQELQSSRTSLENQIFE- 174

Query: 176 QKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAET 235
                       A+   +L    E+  K+N  L+ ELL+  +ELE+R +ERDLST+AAET
Sbjct: 175 -----------TATKSEELSQMAESVAKENVMLRHELLARCEELEIRTIERDLSTQAAET 223

Query: 236 ASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLL 295
           ASKQ L+SIKK+AK+EAEC + + + + ++   +++S           TDS SD GER+ 
Sbjct: 224 ASKQQLDSIKKVAKLEAECRKFRMLAKSSASFNDHRS-----------TDSHSDGGERM- 271

Query: 296 GNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEM 355
                            + + S SWAS+  IE  ++++         S++++LM DFLEM
Sbjct: 272 -----------------DVSCSDSWASSTLIEK-RSLQGTS-----SSIELDLMGDFLEM 308

Query: 356 ERLAALPDTESRSFCVEVGPAS---DQPNADESSIKAELEVLIHR 397
           ERL ALP+T   +   + GP S   +     E+S+ +E+EVL  R
Sbjct: 309 ERLVALPETPDGNG--KSGPESVTEEVVVPSENSLASEIEVLTSR 351

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WSY2|FPP4_ARATH Filament-like plant protein 4 OS=Arabidopsis thaliana GN=FPP4 PE=2 SV=1

 Score =  169 bits (427), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 113/327 (34%), Positives = 183/327 (55%), Gaps = 42/327 (12%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS--EATSKAPPLDEV- 57
           MDR+SW W++KS        +E + +V+ + ++ +  +    Q S  + T+     DEV 
Sbjct: 1   MDRKSWPWKKKS--------SEKTATVTEVVDQENGKKPSYIQISFDQYTNLNGLKDEVK 52

Query: 58  --------VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ 109
                   + D +K L  KLS A  ++ AKE LVKQH+KVAEEAV+GWEKAE E S LK 
Sbjct: 53  SYEEKVTKLEDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKT 112

Query: 110 QLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELE 169
            L+  +     +E+R +HLDGALKEC+RQ+R  +EE EQ++ + ++ +  + ++ ++E E
Sbjct: 113 HLETITLAKLTVEDRAAHLDGALKECMRQIRSLKEENEQKLHDVIATKTNQMDNLRAEFE 172

Query: 170 SKLVDLQKKLQTAKSE-----------------------AAASADRDLCSKLEAAEKQNS 206
           S++ + +++L    +E                        A S    L + +E+ E++ +
Sbjct: 173 SRIGEYEEELLRCGAENDALSRSLQERSNMLMRISEEKSQAESEIEHLKNNIESCEREIN 232

Query: 207 ALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
            LK E   + KELE+R  E+++S ++AE A+KQHLE +KK+AK+EAEC RL+ +VRK  P
Sbjct: 233 TLKYETHVITKELEIRNEEKNMSMRSAEAANKQHLEGVKKIAKLEAECQRLRTLVRKKLP 292

Query: 267 NTENKSFTPSSIYVGSFTDSQSDNGER 293
                +     +    F D + D+ +R
Sbjct: 293 GPAALAQMKMEVESLGFGDHRQDHRQR 319

Arabidopsis thaliana (taxid: 3702)

>sp|O65649|FPP5_ARATH Filament-like plant protein 5 OS=Arabidopsis thaliana GN=FPP5 PE=2 SV=2

 Score =  166 bits (420), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 118/309 (38%), Positives = 171/309 (55%), Gaps = 50/309 (16%)

Query: 1   MDRRSWLWRRKSGGGA------AGGETESSGSVSSLS--------------ERFSDDQTH 40
           M+ R W W+RKS   A       G E+    S+S L+              +   D  TH
Sbjct: 1   MEGRGWPWKRKSSDKATTEKPVVGIESTPVCSLSYLASLENQEKCKNTNYVQITMDSYTH 60

Query: 41  SSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKA 100
            S+  +       L EV    VK L EKL+ A   ++ KE L+ QHAKVAEEAVSGWEKA
Sbjct: 61  MSRMEDQVK----LFEV---QVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVSGWEKA 113

Query: 101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE 160
           + E   LK+QL++ +      E+R SHLD ALKEC RQ+R  +EE ++++Q+ +  +  +
Sbjct: 114 DAETLALKRQLESVTLLKLTAEDRASHLDDALKECTRQIRIVKEESDKKLQDVILAKTSQ 173

Query: 161 WESKKSELESKLVDLQKKLQTAKSEAAA--------------------SADRD---LCSK 197
           W+  K+ELE K+ +L + L  A S+ AA                     A+ D   L + 
Sbjct: 174 WDKIKAELEGKIDELSEGLHRAASDNAALTRSLQERSEMIVRISEERSKAEADVEKLKTN 233

Query: 198 LEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRL 257
           L+ AEK+ S LK +L    KE+E+R  E+++S K+A+ A+KQHLE +KK+AK+EAEC RL
Sbjct: 234 LQLAEKEISYLKYDLHVASKEVEIRNEEKNMSLKSADIANKQHLEGVKKIAKLEAECHRL 293

Query: 258 KAVVRKASP 266
           + ++RK  P
Sbjct: 294 RGLLRKKLP 302

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C698|FPP6_ARATH Filament-like plant protein 6 OS=Arabidopsis thaliana GN=FPP6 PE=2 SV=1

 Score =  149 bits (377), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 94/232 (40%), Positives = 143/232 (61%), Gaps = 23/232 (9%)

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           +N+ V+ L EKLS A   +  KE LVKQH+KVAE+AVSGWEKA+ E   LK  L++ +  
Sbjct: 111 LNEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTLS 170

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQET-------VSKQNLEWESKKSELES 170
               E+R +HLDGALKEC+RQ+R  +++ E ++ +        + K  +E+E +  + E 
Sbjct: 171 KLTAEDRAAHLDGALKECMRQIRNLKKDHEVKLHDVALSKTKQIEKMTMEFEKRMCDYEQ 230

Query: 171 KLVD-------LQKKLQ------TAKSEAAASADRD---LCSKLEAAEKQNSALKLELLS 214
           +L+        L + LQ         SE  + AD +   L S LE  E++  +LK E+  
Sbjct: 231 ELLRSAADSDALSRTLQERSNMLVKVSEEKSRADAEIETLKSNLEMCEREIKSLKYEVHV 290

Query: 215 LVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           + KELE+R  E+++  ++AE+A+KQHLE +KK+AK+EAEC RL+++VRK  P
Sbjct: 291 VSKELEIRNEEKNMCIRSAESANKQHLEGVKKIAKLEAECQRLRSLVRKKLP 342

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SLN1|FPP7_ARATH Filament-like plant protein 7 OS=Arabidopsis thaliana GN=FPP7 PE=3 SV=2

 Score =  115 bits (287), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/290 (34%), Positives = 156/290 (53%), Gaps = 59/290 (20%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEV-VN 59
           MD ++W W++KS         ES+G V +                         D++ + 
Sbjct: 1   MDHKAWPWKKKSMEKTV---VESNGEVVA-------------------------DKIELE 32

Query: 60  DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNS 119
             VK+L +KL++    V A+ +   +H   A+EA+ GWEK + E+++LK++L  A  +  
Sbjct: 33  HRVKSLNDKLNS----VEAESN---KHETEAQEAIVGWEKTKAEVASLKKKLDEALNEKH 85

Query: 120 ALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKL 179
             E R SH D  LKECV+QLR  REEQE+R+ + ++K + E+E +   ++++L    K+L
Sbjct: 86  RSEERSSHTDAGLKECVQQLRFVREEQERRMHDALTKASQEYERRLIVIKTELAGSGKRL 145

Query: 180 QTAKSEAAA---------------SADRD--------LCSKLEAAEKQNSALKLELLSLV 216
             A+ E A                + +RD        L S LE+ EK+N +L+ E+  L 
Sbjct: 146 AEAEGENAQLSKALLAKNKTVEDLNRERDRIEVDFNSLVSSLESKEKENVSLRYEVRVLE 205

Query: 217 KELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           KELELR  ER+ S + AE + K HLE++KK+AK+E+EC RL+ +VRK  P
Sbjct: 206 KELELRNEEREFSRRTAEASHKLHLENVKKVAKLESECQRLRVLVRKRLP 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	651
147866605	749	hypothetical protein VITISV_031800 [Viti	0.874	0.759	0.597	1e-175
359480767	633	PREDICTED: filament-like plant protein 3	0.857	0.881	0.578	1e-170
224096133	664	predicted protein [Populus trichocarpa]	0.897	0.879	0.573	1e-168
359480769	646	PREDICTED: filament-like plant protein 3	0.877	0.883	0.591	1e-167
356527538	671	PREDICTED: filament-like plant protein 3	0.895	0.868	0.524	1e-162
224083536	548	predicted protein [Populus trichocarpa]	0.834	0.990	0.558	1e-162
356512872	673	PREDICTED: filament-like plant protein 3	0.929	0.898	0.505	1e-158
357520147	640	Filament-like plant protein [Medicago tr	0.904	0.920	0.520	1e-156
356518810	649	PREDICTED: filament-like plant protein-l	0.904	0.907	0.522	1e-147
296082619	571	unnamed protein product [Vitis vinifera]	0.766	0.873	0.526	1e-143

>gi|147866605|emb|CAN83687.1| hypothetical protein VITISV_031800 [Vitis vinifera]

 Score =  621 bits (1601), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 373/624 (59%), Positives = 456/624 (73%), Gaps = 55/624 (8%)

Query: 27  VSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQH 86
           +SSLS+ + +    +S S E TSKA P+DE VNDSVK+LTEKLSAALLN+SAKEDLVKQH
Sbjct: 9   LSSLSKVYPN---QNSPSPEVTSKAAPVDEEVNDSVKSLTEKLSAALLNISAKEDLVKQH 65

Query: 87  AKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQ 146
           AKVAEEAVSGWEKAENE+ +LKQQL+A  QKNS LE+RV HLDGALKEC+RQLRQAREEQ
Sbjct: 66  AKVAEEAVSGWEKAENEVFSLKQQLEAXXQKNSXLEDRVGHLDGALKECLRQLRQAREEQ 125

Query: 147 EQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNS 206
           EQ+I E V K+  EWES KSELES++V++Q +LQTAK+E  A+ D  L  KL AAEK+N+
Sbjct: 126 EQKIHEAVVKRTHEWESTKSELESQIVEIQAQLQTAKAEXVATVDPGLELKLGAAEKENA 185

Query: 207 ALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           ALKL+LLS  +ELE+R +E++LST+AAETASKQ+LESIKK+AK+EAEC RLKA+ RKAS 
Sbjct: 186 ALKLQLLSREEELEIRTIEQELSTQAAETASKQNLESIKKVAKLEAECRRLKAMARKASS 245

Query: 267 NTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAI 326
             ++KS T SS+ V S TDSQSD+GERLL  E D  K++  + NECEP+ S SWAS L  
Sbjct: 246 ANDHKSXTASSVCVESLTDSQSDSGERLLALEIDTRKMTGLDTNECEPSRSDSWASGLIQ 305

Query: 327 EPD--KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQP-NAD 383
           E D  KN K + +N+M PSV+ +LMDDFLEMERLAALP+TE+RS C+E G  SD+     
Sbjct: 306 ELDRFKNEKPLVKNLMAPSVEXDLMDDFLEMERLAALPETENRSRCLESGAISDKHIGGS 365

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           ES +KA+LE +I RTAELEE+LE M AEK EL+M L E Q +LETSQ +LKE E KL EL
Sbjct: 366 ESPLKAQLEAMIDRTAELEEKLEKMEAEKMELDMALSECQNQLETSQGRLKEVEEKLVEL 425

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
           +TQLA A++SK+  E E++A  A R VAES+L  VEAE+KT L                 
Sbjct: 426 QTQLALASESKRNAEEEIQATNAKREVAESRLIXVEAEIKTML----------------- 468

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
                                 SKV+SLE+EVEKERALS E  +  +K +DELS++K+E 
Sbjct: 469 ----------------------SKVLSLEEEVEKERALSAEAASKCRKFEDELSRMKRET 506

Query: 564 ELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDS 623
           EL++      LA SN ELKI QE+ELAVAASK AECQKTIASLGRQL+SL TL+D L+DS
Sbjct: 507 ELRN------LASSNGELKIKQEKELAVAASKLAECQKTIASLGRQLKSLATLEDLLLDS 560

Query: 624 EKPLEHTGEG----KNGGESWNLQ 643
           EKPL+   EG    K+G E W L 
Sbjct: 561 EKPLQPMSEGLHHPKDGAEQWTLH 584

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480767|ref|XP_003632521.1| PREDICTED: filament-like plant protein 3-like isoform 2 [Vitis vinifera]

 Score =  606 bits (1562), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 378/653 (57%), Positives = 458/653 (70%), Gaps = 95/653 (14%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ + +Q+S   E TSK+ P+DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPNQNSPSPEVTSKSAPVDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           VNDSVK+LTEKLSAALLN+SAKEDLVKQHAKVAEEAVSGWEKAENE+ +LKQQL+AA+QK
Sbjct: 60  VNDSVKSLTEKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAENEVFSLKQQLEAAAQK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLDGALKEC+RQLRQAREEQEQ+I E V K+  EWES KSELES++V++Q 
Sbjct: 120 NSALEDRVGHLDGALKECLRQLRQAREEQEQKIHEAVVKRTHEWESTKSELESQIVEIQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAK+E  A+ D  L  KL AAEK+N+ALKL+LLS  +ELE+R +E++LST+AAETAS
Sbjct: 180 QLQTAKAETVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTIEQELSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQ+LESIKK+AK+EAEC RLKA+ RKAS   ++KS TPS                     
Sbjct: 240 KQNLESIKKVAKLEAECRRLKAMARKASSANDHKSITPS--------------------- 278

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
                              S SWAS L  E D  KN K + +N+M PSV+++LMDDFLEM
Sbjct: 279 ------------------RSDSWASGLIQELDRFKNEKPLVKNLMAPSVELDLMDDFLEM 320

Query: 356 ERLAALPDTESRSFCVEVGPASDQP-NADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERLAALP+TE+RS C+E G  SD+     ES +KA+LE +I RTAELEE+LE M AEK E
Sbjct: 321 ERLAALPETENRSRCLESGAISDKHIGGSESPLKAQLEAMIDRTAELEEKLEKMEAEKME 380

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           L+M L E Q +LETSQ +LKE E KL EL+TQLA A++SK+  E E++   A R VAES+
Sbjct: 381 LDMALSECQNQLETSQGRLKEVEEKLVELQTQLALASESKRNAEEEIQTTNAKREVAESR 440

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
           L  VEAE+KT L                                       SKV+SLE+E
Sbjct: 441 LIAVEAEIKTML---------------------------------------SKVLSLEEE 461

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAAS 594
           VEKERALS E  +  +K +DELS++K+E EL++      LA SN ELKI QE+ELAVAAS
Sbjct: 462 VEKERALSAEAASKCRKFEDELSRMKRETELRN------LASSNGELKIKQEKELAVAAS 515

Query: 595 KFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEG----KNGGESWNLQ 643
           K AECQKTIASLGRQL+SL TL+D L+DSEKPL+   EG    K+G E W L 
Sbjct: 516 KLAECQKTIASLGRQLKSLATLEDLLLDSEKPLQPMSEGLHHPKDGAEQWTLH 568

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224096133|ref|XP_002310544.1| predicted protein [Populus trichocarpa] gi|222853447|gb|EEE90994.1| predicted protein [Populus trichocarpa]

 Score =  599 bits (1544), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 366/638 (57%), Positives = 451/638 (70%), Gaps = 54/638 (8%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQT---HSSQSSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ET+SSGS+SS SERFSDDQ    H+ QS E TSK+   DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETDSSGSISSRSERFSDDQVYTIHNPQSPEVTSKSVLTDED 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
            +D+V+TLTEKLSAALLN+SAKE+LVKQHAKVAEEAVSGWEKAEN+LS LKQQL+ A++K
Sbjct: 60  HSDNVRTLTEKLSAALLNISAKEELVKQHAKVAEEAVSGWEKAENDLSALKQQLEDATKK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLD ALKECVRQLRQ+REEQ++RI E V+K+  EWES KSELE++L     
Sbjct: 120 NSALEDRVGHLDAALKECVRQLRQSREEQDERINEVVTKKISEWESTKSELEAQL----- 174

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
             QTAK EA  SAD DL  + +A EK+N +LK ELLS  +E+E+RI+ERDLST+AAETAS
Sbjct: 175 --QTAKDEATTSADSDLWKRFDAVEKENMSLKRELLSRAEEIEIRILERDLSTQAAETAS 232

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           K HLESIKKLAK+EAEC +LKA+ RKAS   + KS T SSI   S TD QSD GERLL  
Sbjct: 233 KLHLESIKKLAKLEAECRKLKAMARKASAANDYKSLTASSIGDESITDRQSDIGERLLAV 292

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+ +CK+S  E+NEC+P+ S S A A A E D  KN K +GRN  V SV+INLMDDFLEM
Sbjct: 293 ESHSCKMSGLEMNECDPSCSDSRACAHATEFDQYKNWKPIGRNRTVHSVEINLMDDFLEM 352

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSEL 415
           ERLAA P T S    +E  P SD+ N   +  K ELE +I+RTAELEE+L+ M  EK++ 
Sbjct: 353 ERLAAFPYTLSGRSYLEAEPVSDKGNGSGNPWKEELESMINRTAELEEKLDKMEEEKNKS 412

Query: 416 EMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475
           EM L + QR+LET ++ L EA+ K+                                   
Sbjct: 413 EMALTKCQRQLETLRSHLHEADTKI----------------------------------- 437

Query: 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535
                E++ +LALAN+S QA EEE+K  ++K E  +S+LR  EAE++TL SKV+SL+ EV
Sbjct: 438 ----GELQAKLALANESSQAREEEMKDIEAKSEE-KSQLRIAEAEIKTLLSKVVSLDSEV 492

Query: 536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASK 595
           EKERALS EN    Q+ +DELSK+K E ELQHE + + +A  N+ELKI Q  +LAVAASK
Sbjct: 493 EKERALSTENAVKSQQLEDELSKMKCEAELQHENERRRVASFNEELKITQ-VKLAVAASK 551

Query: 596 FAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEG 633
            A+CQKTI+SLG QL+SL T +D L DSEK  + + EG
Sbjct: 552 LADCQKTISSLGLQLKSLATFEDLLFDSEKSSDASSEG 589

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480769|ref|XP_002273488.2| PREDICTED: filament-like plant protein 3-like isoform 1 [Vitis vinifera]

 Score =  596 bits (1537), Expect = e-167,   Method: Compositional matrix adjust.
 Identities = 386/653 (59%), Positives = 468/653 (71%), Gaps = 82/653 (12%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ + +Q+S   E TSK+ P+DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPNQNSPSPEVTSKSAPVDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           VNDSVK+LTEKLSAALLN+SAKEDLVKQHAKVAEEAVSGWEKAENE+ +LKQQL+AA+QK
Sbjct: 60  VNDSVKSLTEKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAENEVFSLKQQLEAAAQK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLDGALKEC+RQLRQAREEQEQ+I E V K+  EWES KSELES++V++Q 
Sbjct: 120 NSALEDRVGHLDGALKECLRQLRQAREEQEQKIHEAVVKRTHEWESTKSELESQIVEIQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAK+E  A+ D  L  KL AAEK+N+ALKL+LLS  +ELE+R +E++LST+AAETAS
Sbjct: 180 QLQTAKAETVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTIEQELSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQ+LESIKK+AK+EAEC RLKA+ RKAS   ++KS T SS+ V S TDSQS         
Sbjct: 240 KQNLESIKKVAKLEAECRRLKAMARKASSANDHKSITASSVCVESLTDSQS--------- 290

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
                            +SS SWAS L  E D  KN K + +N+M PSV+++LMDDFLEM
Sbjct: 291 -----------------DSSDSWASGLIQELDRFKNEKPLVKNLMAPSVELDLMDDFLEM 333

Query: 356 ERLAALPDTESRSFCVEVGPASDQP-NADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERLAALP+TE+RS C+E G  SD+     ES +KA+LE +I RTAELEE+LE M AEK E
Sbjct: 334 ERLAALPETENRSRCLESGAISDKHIGGSESPLKAQLEAMIDRTAELEEKLEKMEAEKME 393

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           L+M L E Q +LETSQ +LKE E KL EL+TQLA A++SK+  E E++   A R VAES+
Sbjct: 394 LDMALSECQNQLETSQGRLKEVEEKLVELQTQLALASESKRNAEEEIQTTNAKREVAESR 453

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
           L  VEAE+KT L                                       SKV+SLE+E
Sbjct: 454 LIAVEAEIKTML---------------------------------------SKVLSLEEE 474

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAAS 594
           VEKERALS E  +  +K +DELS++K+E EL++      LA SN ELKI QE+ELAVAAS
Sbjct: 475 VEKERALSAEAASKCRKFEDELSRMKRETELRN------LASSNGELKIKQEKELAVAAS 528

Query: 595 KFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEG----KNGGESWNLQ 643
           K AECQKTIASLGRQL+SL TL+D L+DSEKPL+   EG    K+G E W L 
Sbjct: 529 KLAECQKTIASLGRQLKSLATLEDLLLDSEKPLQPMSEGLHHPKDGAEQWTLH 581

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356527538|ref|XP_003532366.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  578 bits (1490), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 356/679 (52%), Positives = 456/679 (67%), Gaps = 96/679 (14%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQ-------THSSQSSEATSKAPP 53
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q       T ++ S E TSKA P
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSLSERFSDEQDVVKVYPTQAAFSPEVTSKAAP 59

Query: 54  LDEVVND-------SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELST 106
            +EV N         +K LT+KL+AALL +SAKEDLVKQH+KVAEEAVSGWEKAENE+S+
Sbjct: 60  NEEVSNPKKSKEDTGLKILTDKLAAALLTISAKEDLVKQHSKVAEEAVSGWEKAENEVSS 119

Query: 107 LKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKS 166
           LKQQL AA QKNS LE+RV HLDGALKEC+RQLRQARE QEQ++ E V   + +WESKKS
Sbjct: 120 LKQQLDAARQKNSILEDRVGHLDGALKECMRQLRQARELQEQKMVEAVVNSSRDWESKKS 179

Query: 167 ELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVER 226
           ELE K+ + + +LQTAK++AAAS   DL  +LEA + +NS+LK EL S ++ELE RIVER
Sbjct: 180 ELERKVAEFEAQLQTAKADAAASIHFDLHQRLEAVQNENSSLKHELQSRLEELEFRIVER 239

Query: 227 DLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDS 286
           DLS++AAETASKQHLES+KK+AK+EAEC RLKA+ RK     +++S T SS+YV SFTDS
Sbjct: 240 DLSSQAAETASKQHLESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYVESFTDS 299

Query: 287 QSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSV 344
            SD+G                E+NECE     S +S+  +E D  KN KA G+N +V S 
Sbjct: 300 MSDSG---------------WEMNECELRRFDSCSSSFVMELDQFKNEKANGKNHVVSST 344

Query: 345 DINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEE 404
           +INLMDDFLEMERLA LPD+ES S  V    ASDQ N  +++IKAE+E +I + AELE++
Sbjct: 345 EINLMDDFLEMERLATLPDSESGSNFVRKEVASDQSNVGQATIKAEIEAMIEKNAELEKK 404

Query: 405 LENMRAE---------------------KSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           L  M AE                     K E++M L + Q +LETS++Q++EAELK+   
Sbjct: 405 LGKMEAEMEGMIQKNVELEKKLKKMEAGKVEVDMVLTKYQMQLETSESQIREAELKV--- 461

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
                                               AE +TQLALA KS Q A EE+K+ 
Sbjct: 462 ------------------------------------AEFQTQLALAKKSNQEACEELKAT 485

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
           K+KKE  ES L+  E E+E L SK+ SLE+E+ KERALS EN       + ELSK+K ++
Sbjct: 486 KAKKEIVESTLKHTETEVEELISKIRSLEEEIHKERALSTENSIKCGNLEVELSKMKHKV 545

Query: 564 ELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDS 623
           ++Q + ++++  G N +LK+ QE++LA+AAS+FAECQKTIASLG+QL+SL TL+DFL+DS
Sbjct: 546 QVQQDTEIKHTEGVNLDLKLKQEKDLALAASRFAECQKTIASLGQQLKSLATLEDFLLDS 605

Query: 624 EKPLEHTGE----GKNGGE 638
           + P+E T E     +NGGE
Sbjct: 606 DNPMESTCEVTKGHQNGGE 624

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224083536|ref|XP_002307062.1| predicted protein [Populus trichocarpa] gi|222856511|gb|EEE94058.1| predicted protein [Populus trichocarpa]

 Score =  577 bits (1486), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 349/625 (55%), Positives = 434/625 (69%), Gaps = 82/625 (13%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQ---THSSQSSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ   TH+ QS E TS+A   DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPTHNPQSPEVTSEALLTDED 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           + D+V+TLT+KLSAALLN+SAKE+LVKQHAKVAEEAVSGWEKAE ELS LKQQ++A ++K
Sbjct: 60  IRDNVRTLTDKLSAALLNLSAKEELVKQHAKVAEEAVSGWEKAEKELSALKQQIEAGTKK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NS LE+RVSHLD ALKECVRQLRQ+REEQE+RI E V+K+  E ES KSELE++L++LQ 
Sbjct: 120 NSGLEDRVSHLDAALKECVRQLRQSREEQERRINEAVTKKICERESTKSELEAQLIELQA 179

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAKS+A  SAD +L  KL A EK+N +LK EL S  +E+++RI+ERDLST+AAETAS
Sbjct: 180 RLQTAKSDATVSADSELWQKLNAVEKENLSLKRELFSRAEEIQVRILERDLSTQAAETAS 239

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           K  LESIKKLAK+EAEC +L A+                                     
Sbjct: 240 KLQLESIKKLAKLEAECRKLLAI------------------------------------- 262

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+D+CK S  E+NEC+   S SWA A A E D  K  + +GRNVM PS++INLMDDFLEM
Sbjct: 263 ESDSCKRSGLEMNECDQICSDSWACAHATELDQSKKQRPIGRNVMAPSLEINLMDDFLEM 322

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSEL 415
           ERLAAL DTES    +E GP SD+ N   + +K ELE +I+RT ELEE+L+ M  EK + 
Sbjct: 323 ERLAALLDTESGISYLEAGPVSDKGNGSGNPLKEELESIINRTTELEEKLDKMEEEKFKS 382

Query: 416 EMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL 475
           EM L E QR+LET ++QLKEA+ K+EEL+  L                            
Sbjct: 383 EMALTECQRQLETLRSQLKEADAKMEELQDLLT--------------------------- 415

Query: 476 SVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV 535
                       LAN+S+QA EEE+  + SK++  ES+LR  EAE++TL SK++SL+ EV
Sbjct: 416 ------------LANESRQAREEEIMRSDSKRKETESQLRIAEAEIKTLLSKIVSLDAEV 463

Query: 536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASK 595
           EKERALS EN A  Q+ +DELSK+K E+ELQHE++ + +A  N+ELKI QE+ELAVAASK
Sbjct: 464 EKERALSAENAAKSQELEDELSKMKCEVELQHEIERKRIASFNEELKITQEKELAVAASK 523

Query: 596 FAECQKTIASLGRQLRSLVTLDDFL 620
            AECQKTI+SLG QL+SL TL+D L
Sbjct: 524 LAECQKTISSLGLQLKSLATLEDLL 548

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512872|ref|XP_003525139.1| PREDICTED: filament-like plant protein 3-like [Glycine max]

 Score =  565 bits (1457), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 342/676 (50%), Positives = 452/676 (66%), Gaps = 71/676 (10%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVND 60
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q   ++      K+   D     
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSLSERFSDEQAAPNEEVSTPKKSKEED----T 55

Query: 61  SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSA 120
            VK +T+KL+ ALL +SAKEDLVKQH+KVAEEAVSGWEKAENE+S+LKQ+L A  +KNS 
Sbjct: 56  DVKIITDKLATALLTISAKEDLVKQHSKVAEEAVSGWEKAENEVSSLKQKLDAERKKNSI 115

Query: 121 LENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ 180
           LE+RV HLDGALKEC+RQLRQARE QEQ+I E V   + +WESKKSELE K+ +L+ +LQ
Sbjct: 116 LEDRVGHLDGALKECMRQLRQAREVQEQKIVEAVVNSSRDWESKKSELERKVAELEAQLQ 175

Query: 181 TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
           T K++AAAS   DL  +LEA +K+NS+LK EL S ++ELE RIVERDL ++AAETASKQH
Sbjct: 176 TVKADAAASIRFDLHQRLEAVQKENSSLKHELQSRLEELEFRIVERDLRSQAAETASKQH 235

Query: 241 LESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETD 300
           LES+KK+AK+EAEC RLKA+ RK     +++S T SS+Y  SFTDS SD+G+RLL  E+D
Sbjct: 236 LESVKKVAKLEAECRRLKAMTRKTFSVNDHRSVTASSVYAESFTDSMSDSGDRLLAVESD 295

Query: 301 NCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEMERL 358
             K+   E+NECE +   S +S+L +E D  KN K  G+N  VPS +INLMDDFLEMERL
Sbjct: 296 MRKLGGWEMNECELSRFDSCSSSLVMELDQFKNEKGNGKNHAVPSTEINLMDDFLEMERL 355

Query: 359 AALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAE------- 411
           AALPD ES S  V  G ASDQ N  ++++KAE+E +I +  ELE++L  M AE       
Sbjct: 356 AALPDGESGSSFVREGVASDQSNVGQATMKAEIEAMIQKDDELEKKLGKMEAEMEAMIQK 415

Query: 412 --------------KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV 457
                         K E++M L + Q +LETS++Q +EAELK+ E +TQLA A KS Q  
Sbjct: 416 NVELEKKLKKMEAGKVEVDMVLTKYQMQLETSESQTREAELKVAEFQTQLALAKKSNQEA 475

Query: 458 EVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAV 517
             E+KA  A + + ES L +                                        
Sbjct: 476 CEELKATKAKKAIVESTLKL---------------------------------------T 496

Query: 518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGS 577
           + E+E L S++ SLE++++KERALS +N   + K +DELSK+K ++ +Q + ++++    
Sbjct: 497 QTEVEELISQIRSLEEKIQKERALSAKNSIKWGKLEDELSKMKHKVLVQQDTEIKHRECV 556

Query: 578 NQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGE----G 633
           N +LK+ QE+ELA AAS+FAECQKTIASLG+QL+SL TL+DFL+DS+ P+E T +     
Sbjct: 557 NLDLKLKQEKELARAASRFAECQKTIASLGQQLKSLATLEDFLLDSDNPMESTCQVTKGH 616

Query: 634 KNGGESWNLQATEFTF 649
           +NGGE   L  ++ + 
Sbjct: 617 QNGGEHLKLHHSDLSL 632

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357520147|ref|XP_003630362.1| Filament-like plant protein [Medicago truncatula] gi|355524384|gb|AET04838.1| Filament-like plant protein [Medicago truncatula]

 Score =  558 bits (1439), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 347/667 (52%), Positives = 444/667 (66%), Gaps = 78/667 (11%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQ---SSEATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SSLSERFSD+Q +  Q   S E TSK  P +EV
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSLSSLSERFSDEQVYPIQATLSPEVTSKLAPNEEV 59

Query: 58  VND--------SVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQ 109
                       VKTLT +L+AALL +SAKED+VKQH+KVAEEA+SGWEKAENE+S+LKQ
Sbjct: 60  STPKKYNEEGIDVKTLTNELAAALLEISAKEDMVKQHSKVAEEAISGWEKAENEVSSLKQ 119

Query: 110 QLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELE 169
           QL AA QKNS LE+RVSHLDGALKEC+RQLRQARE QEQ+I E V+  + +  S++ ELE
Sbjct: 120 QLDAARQKNSGLEDRVSHLDGALKECMRQLRQAREVQEQKIHEAVANNSHDSGSRRFELE 179

Query: 170 SKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLS 229
            K+ +L+ +LQT+K+EAAAS   DL  +LEA EK+NS+L+LEL S ++ELE RI ERDLS
Sbjct: 180 RKVAELEAQLQTSKAEAAASIRSDLQRRLEAVEKENSSLQLELQSRLEELEFRIAERDLS 239

Query: 230 TKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSD 289
           T+AAETASKQHLES KK+AK+EAEC RLK++ RK     +N+S T SS+Y+ S TDS SD
Sbjct: 240 TQAAETASKQHLESTKKVAKLEAECRRLKSMTRKTFNVNDNRSLTASSVYIESLTDSISD 299

Query: 290 NGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDIN 347
            GE                +NE EP+ S S +SAL  E D  KN K   +N +  S +IN
Sbjct: 300 GGE----------------LNEYEPSCSDSCSSALITEFDQFKNKKVTRKNHIATSTEIN 343

Query: 348 LMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELEN 407
           LMDDFLEMERLAALPDTES S     G   DQ    + +    +E +I + AELE++LE 
Sbjct: 344 LMDDFLEMERLAALPDTESGSHYANGGRVLDQSIVGQGT----MEAMIEKNAELEKKLEK 399

Query: 408 MRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA 467
           M A K ++EM L E Q +LE S+N+++ AELK+EEL+T                      
Sbjct: 400 MEAAKLDVEMSLTECQMQLEKSENRIRAAELKVEELQT---------------------- 437

Query: 468 RGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK 527
                            QLALANKS Q A EE+K  K+KKE  ES+L+  + E+E L SK
Sbjct: 438 -----------------QLALANKSNQEAYEELKETKTKKEIVESKLKFAQTEVEELISK 480

Query: 528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEE 587
           + SLE+E++KERALS EN    +K + ELS++K E ++Q + K  +    N++LK  Q++
Sbjct: 481 IHSLEEEIQKERALSAENSIKSRKLEGELSRMKHEAQVQQDAKTLHKENINRDLKSKQDK 540

Query: 588 ELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEK-PLEHTGE----GKNGGESWNL 642
           ELA+A SKFAECQKTIASLG+QL+SL TL+DFL+DS+  P+E T E     + GGE   L
Sbjct: 541 ELALATSKFAECQKTIASLGKQLKSLATLEDFLLDSDNSPMELTCEVTQSPQKGGEKLKL 600

Query: 643 QATEFTF 649
             ++ + 
Sbjct: 601 NHSDLSM 607

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518810|ref|XP_003528070.1| PREDICTED: filament-like plant protein-like [Glycine max]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 339/649 (52%), Positives = 424/649 (65%), Gaps = 60/649 (9%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSW WRRKS   + G ETESSGS+SS SERF DDQ + +Q++   E   +A P DE 
Sbjct: 1   MDRRSWPWRRKSSEKSPG-ETESSGSMSSHSERFFDDQVYPTQTTPPPEGMFEAAPNDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
            ND VKTLTE+LSAALLN  AKEDL KQHAKVAEEAVSGWEKAENEL  LKQQL    Q+
Sbjct: 60  AND-VKTLTERLSAALLNSRAKEDLAKQHAKVAEEAVSGWEKAENELLILKQQLIDGKQQ 118

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NS LE++VSHL+ ALKEC+R LRQA+EEQEQ+I E ++  +   ESK+ + E      + 
Sbjct: 119 NSVLEDQVSHLNEALKECMRNLRQAKEEQEQKIHEALTNNSYGLESKRPDHE-----WKV 173

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
            +      AA+S   DL  +LE  EK+N++LK+EL S ++ELE R +ER+LST+AAE AS
Sbjct: 174 VVAAKADAAASSVHLDLQQRLEGKEKENASLKIELQSRLEELEFRTIERNLSTQAAEAAS 233

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQHLESIK +AK+EAEC RLKAV RK     +++S   SS+YV SFTDS SD GER L  
Sbjct: 234 KQHLESIKTVAKLEAECRRLKAVTRKTLSANDHRSLASSSVYVESFTDSMSDIGERQLIV 293

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPD--KNVKAVGRNVMVPSVDINLMDDFLEM 355
           E+D  K+   ++NE EPN   SW S L  E D  KN    G+N MV S +INLMDDFLEM
Sbjct: 294 ESDMRKLGGWDMNEGEPNHHDSWPSTLIKELDQFKNENTAGKNSMVFSTEINLMDDFLEM 353

Query: 356 ERLAALPDTES-RSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSE 414
           ERL ALPDTES  SF VE G ASDQ N    +  AE+E ++ + A LE++LE M AEK E
Sbjct: 354 ERLVALPDTESVSSFPVE-GAASDQLNVGPRTKNAEVEAIVQKNAALEKKLEKMEAEKLE 412

Query: 415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK 474
           LEMDL E Q++LE S +++KE EL++ EL+T+LA AN S +    +++A    + +AESK
Sbjct: 413 LEMDLTECQKQLEASLSRIKEVELEVVELQTKLALANNSNEEAYEKLEATEEKKEIAESK 472

Query: 475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE 534
                                                  LR    E E L SK+ SLE+E
Sbjct: 473 ---------------------------------------LRVAHTEAEELVSKICSLEEE 493

Query: 535 VEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAAS 594
           +EKERALS EN+A   K +DEL ++K E +L  +  +    G N ELK  QE+ELA+AAS
Sbjct: 494 IEKERALSTENMAKCGKLEDELLRIKNEAQLHKDTLILPGEGVNSELK--QEKELALAAS 551

Query: 595 KFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGE-----GKNGGE 638
           KFAEC+KTI SLG QL+SL TL+DFL+DSE P+E T E      +NGGE
Sbjct: 552 KFAECRKTIESLGLQLKSLATLEDFLLDSESPMELTCEVTQPGFQNGGE 600

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082619|emb|CBI21624.3| unnamed protein product [Vitis vinifera]

 Score =  515 bits (1327), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 342/650 (52%), Positives = 419/650 (64%), Gaps = 151/650 (23%)

Query: 1   MDRRSWLWRRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSS---EATSKAPPLDEV 57
           MDRRSWLWRRKS   + G ETESSGS+SS SERFSDDQ + +Q+S   E TSK+ P+DE 
Sbjct: 1   MDRRSWLWRRKSSEKSPG-ETESSGSISSHSERFSDDQVYPNQNSPSPEVTSKSAPVDEE 59

Query: 58  VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
           VNDSVK+LTEKLSAALLN+SAKEDLVKQHAKVAEEAVSGWEKAENE+ +LKQQL+AA+QK
Sbjct: 60  VNDSVKSLTEKLSAALLNISAKEDLVKQHAKVAEEAVSGWEKAENEVFSLKQQLEAAAQK 119

Query: 118 NSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQK 177
           NSALE+RV HLDGALKEC+RQLRQAREEQEQ+I E                         
Sbjct: 120 NSALEDRVGHLDGALKECLRQLRQAREEQEQKIHEAA----------------------- 156

Query: 178 KLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETAS 237
           +LQTAK+E  A+ D  L  KL AAEK+N+ALKL+LLS  +ELE+R +E++LST+AAETAS
Sbjct: 157 QLQTAKAETVATVDPGLELKLGAAEKENAALKLQLLSREEELEIRTIEQELSTQAAETAS 216

Query: 238 KQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGN 297
           KQ+LESIKK+AK+EAEC RLKA+ RKAS   ++K     SI   S T           G 
Sbjct: 217 KQNLESIKKVAKLEAECRRLKAMARKASSANDHK-----SITASSMT-----------GL 260

Query: 298 ETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMER 357
           +T+                                           ++++LMDDFLEMER
Sbjct: 261 DTNE------------------------------------------LELDLMDDFLEMER 278

Query: 358 LAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEM 417
           LAALP+TE+RS C+E G  SD+                   AELEE+LE M AEK EL+M
Sbjct: 279 LAALPETENRSRCLESGAISDK-----------------HIAELEEKLEKMEAEKMELDM 321

Query: 418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV 477
            L E Q +LETSQ +LKE E KL                                     
Sbjct: 322 ALSECQNQLETSQGRLKEVEEKL------------------------------------- 344

Query: 478 VEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK 537
              E++TQLALA++SK+ AEEE+++  +K+E AESRL AVEAE++T+ SKV+SLE+EVEK
Sbjct: 345 --VELQTQLALASESKRNAEEEIQTTNAKREVAESRLIAVEAEIKTMLSKVLSLEEEVEK 402

Query: 538 ERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFA 597
           ERALS E  +  +K +DELS++K+E EL++      LA SN ELKI QE+ELAVAASK A
Sbjct: 403 ERALSAEAASKCRKFEDELSRMKRETELRN------LASSNGELKIKQEKELAVAASKLA 456

Query: 598 ECQKTIASLGRQLRSLVTLDDFLIDSEKPLEHTGEG----KNGGESWNLQ 643
           ECQKTIASLGRQL+SL TL+D L+DSEKPL+   EG    K+G E W L 
Sbjct: 457 ECQKTIASLGRQLKSLATLEDLLLDSEKPLQPMSEGLHHPKDGAEQWTLH 506

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	651
TAIR|locus:2204755	779	AT1G77580 [Arabidopsis thalian	0.847	0.708	0.299	2.2e-43
TAIR|locus:2824556	982	AT1G19835 "AT1G19835" [Arabido	0.207	0.137	0.407	1.7e-37
TAIR|locus:2135154	996	AT4G36120 "AT4G36120" [Arabido	0.142	0.093	0.49	3.3e-33
TAIR|locus:2204990	1054	AT1G47900 "AT1G47900" [Arabido	0.121	0.074	0.531	2.5e-32
TAIR|locus:2090684	704	AT3G19370 [Arabidopsis thalian	0.344	0.318	0.209	1.2e-09
UNIPROTKB|F5H4J1	852	NUMA1 "Nuclear mitotic apparat	0.278	0.212	0.258	5.7e-06
ZFIN|ZDB-GENE-050531-1	1974	myh11a "myosin, heavy polypept	0.311	0.102	0.208	1.1e-05
UNIPROTKB|Q14980	2115	NUMA1 "Nuclear mitotic apparat	0.278	0.085	0.258	4.1e-05
CGD|CAL0003255	1128	SMC6 [Candida albicans (taxid:	0.144	0.083	0.275	5.5e-05
UNIPROTKB|Q9BTE9	979	NUMA1 "Nuclear mitotic apparat	0.147	0.098	0.277	0.00019

TAIR|locus:2204755 AT1G77580 [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 182/607 (29%), Positives = 276/607 (45%)

Query:    37 DQTHSSQSSEATSKAPPLD-----EVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAE 91
             + T  S+  E  S    L+     E + DS+KTL EKLSAAL NVSAK+DLVKQH KVAE
Sbjct:    32 ESTMESRDDEIQSPTVSLEVETEKEELKDSMKTLAEKLSAALANVSAKDDLVKQHVKVAE 91

Query:    92 EAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVXXXXXXXXXXXXXXX 151
             EAV+GWEKAENE+  LK++L+AA  KN  LE+RVSHLDGALKECV               
Sbjct:    92 EAVAGWEKAENEVVELKEKLEAADDKNRVLEDRVSHLDGALKECVRQLRQARDEQEQRIQ 151

Query:   152 XTVSKQNXXXXXXXXXXXXXXVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAXXXX 211
               V ++                  +  L+    E A  ++ +L    E+  K+N      
Sbjct:   152 DAVIERTQELQSS-----------RTSLENQIFETATKSE-ELSQMAESVAKENVMLRHE 199

Query:   212 XXXXXXXXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENK 271
                       R +ERDLST+AAETASKQ L+SIKK+AK+EAEC + + + + ++   +++
Sbjct:   200 LLARCEELEIRTIERDLSTQAAETASKQQLDSIKKVAKLEAECRKFRMLAKSSASFNDHR 259

Query:   272 SFTPSSIYVGSFTD-SQSDN--GERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEP 328
             S T S    G   D S SD+     L+   +     S  E++            AL   P
Sbjct:   260 S-TDSHSDGGERMDVSCSDSWASSTLIEKRSLQGTSSSIELDLMGDFLEMERLVALPETP 318

Query:   329 DKNVKA----VGRNVMVPSV-----DINLMDDFL-EMERLAALPDTESRSFCVEVGPASD 378
             D N K+    V   V+VPS      +I ++   + E+E      + E      EV     
Sbjct:   319 DGNGKSGPESVTEEVVVPSENSLASEIEVLTSRIKELEEKLEKLEAEKHELENEV----- 373

Query:   379 QPNADESSIKAE-LEVLIHRTAXXXXXXXNMRAEKSELEMDLK-ESQRRLETSQNXXXXX 436
             + N +E+ +  E  EVL  RT         + AEK EL+ ++K   ++ +   +N     
Sbjct:   374 KCNREEAVVHIENSEVLTSRTKELEEKLEKLEAEKEELKSEVKCNREKAVVHVENSLAAE 433

Query:   437 XXXXXXXXXXXXFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANXXXXXX 496
                            +  +A +VE+++ +      E  ++ VE  + T++ +        
Sbjct:   434 IEVLTSRTKELEEQLEKLEAEKVELESEVKCN--REEAVAQVENSLATEIEVLTCRIKQL 491

Query:   497 XXXXXXXXXXXXXXXXRL---RAVEA----EMETLRSKVISLEDEVEKERALSEENIANF 549
                              +   R VE+    E+E +  + + LE+++EK      E   +F
Sbjct:   492 EEKLEKLEVEKDELKSEVKCNREVESTLRFELEAIACEKMELENKLEKLEVEKAELQISF 551

Query:   550 Q--KSKDELSKV-KQEIELQ-HEVKLQYLAGSNQELKINQEEE-LAVAASKFAECQKTIA 604
                K K E S+V  QEIE +  E++ +    +  ELK   E + +A+ A    +  K I 
Sbjct:   552 DIIKDKYEESQVCLQEIETKLGEIQTEMKLVN--ELKAEVESQTIAMEADAKTKSAK-IE 608

Query:   605 SLGRQLR 611
             SL   +R
Sbjct:   609 SLEEDMR 615

GO:0005737 "cytoplasm" evidence=ISM

TAIR|locus:2824556 AT1G19835 "AT1G19835" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.7e-37, Sum P(3) = 1.7e-37
 Identities = 57/140 (40%), Positives = 77/140 (55%)

Query:     1 MDRRSWLWRRKXXXXXXXXXXXXXXXXXX--XXXRFSDDQ-TH-SSQSSEATSKAPPLDE 56
             MDR+SW W++K                       + S DQ T+ +    E  S    + +
Sbjct:     1 MDRKSWPWKKKSSEKTATVTEVVDQENGKKPSYIQISFDQYTNLNGLKDEVKSYEEKVTK 60

Query:    57 VVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQ 116
             +  D +K L  KLS A  ++ AKE LVKQH+KVAEEAV+GWEKAE E S LK  L+  + 
Sbjct:    61 L-EDQIKDLDLKLSTANADIVAKEVLVKQHSKVAEEAVTGWEKAEAEASALKTHLETITL 119

Query:   117 KNSALENRVSHLDGALKECV 136
                 +E+R +HLDGALKEC+
Sbjct:   120 AKLTVEDRAAHLDGALKECM 139

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2135154 AT4G36120 "AT4G36120" [Arabidopsis thaliana (taxid:3702)]

 Score = 206 (77.6 bits), Expect = 3.3e-33, Sum P(4) = 3.3e-33
 Identities = 49/100 (49%), Positives = 61/100 (61%)

Query:    36 DDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVS 95
             D  TH S+  +       L EV    VK L EKL+ A   ++ KE L+ QHAKVAEEAVS
Sbjct:    56 DSYTHMSRMEDQVK----LFEV---QVKDLKEKLTLAHSEINTKESLILQHAKVAEEAVS 108

Query:    96 GWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKEC 135
             GWEKA+ E   LK+QL++ +      E+R SHLD ALKEC
Sbjct:   109 GWEKADAETLALKRQLESVTLLKLTAEDRASHLDDALKEC 148

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2204990 AT1G47900 "AT1G47900" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.5e-32, Sum P(3) = 2.5e-32
 Identities = 42/79 (53%), Positives = 55/79 (69%)

Query:    58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK 117
             +N+ V+ L EKLS A   +  KE LVKQH+KVAE+AVSGWEKA+ E   LK  L++ +  
Sbjct:   111 LNEDVEDLNEKLSVANEEIVTKEALVKQHSKVAEDAVSGWEKADAEALALKNTLESVTLS 170

Query:   118 NSALENRVSHLDGALKECV 136
                 E+R +HLDGALKEC+
Sbjct:   171 KLTAEDRAAHLDGALKECM 189

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2090684 AT3G19370 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.2e-09, Sum P(3) = 1.2e-09
 Identities = 52/248 (20%), Positives = 98/248 (39%)

Query:    38 QTHSSQSSEATSKAPPLDEVVNDSV-KTLTEKLSAALLNVSAKEDLVKQHAK--VAEEAV 94
             Q  S +        PP+  V ++   K+L+EKL    LN   K+  V  + +  V +E  
Sbjct:    20 QVSSRRGRGQARMVPPVSGVRSERARKSLSEKLETVALNSPKKDARVSLYGEKSVVDEIF 79

Query:    95 ---------SGWEKAENE-----LSTLKQQLKAASQKNSA--LENRVSHLDGALKECVXX 138
                      +G +  E+         L Q+++   + + A  L+N       ++K+    
Sbjct:    80 LEDEEMGHETGLKNGESSPFCGVSDKLLQRIELLGRDHEATRLDNNKFRSIESMKKRQEE 139

Query:   139 XXXXXXXXXXXXXXTVSKQNXXXXXXXXXXXXXXVDLQKKLQTAKSEAAASADRDLCSKL 198
                           T++ +N              V LQ++    +SE  A     L ++L
Sbjct:   140 SACDDLVDMKTKIQTLAAENTQLKKSLVAKEELAVSLQERKFQVESEFEA-----LMTRL 194

Query:   199 EAAEKQNSAXXXXXXXXXXXXXXRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK 258
             ++ EK+N+               +  E + + ++ E   KQ L ++ K+ ++EAEC RL+
Sbjct:   195 DSTEKENAFLRYEYTVLEKDLQVKTEETEHTRRSMELTHKQQLRNVNKIVELEAECQRLR 254

Query:   259 AVVRKASP 266
              + RK  P
Sbjct:   255 LLFRKKFP 262

GO:0005737 "cytoplasm" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

UNIPROTKB|F5H4J1 NUMA1 "Nuclear mitotic apparatus protein 1" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 5.7e-06, Sum P(2) = 5.7e-06
 Identities = 51/197 (25%), Positives = 83/197 (42%)

Query:   450 ANKSKQAVEVEMKAAIAARGVAESKLSVVEAE-------MKTQLALANXXXXXXXXXXXX 502
             A +   A E E +A++  R  A  +L  +E E       ++ QL +AN            
Sbjct:   582 AQQLATAAE-EREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQTSVTQ 640

Query:   503 XXXXXXXXXXRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
                       ++  ++A +ET R +    + E + + A  E  + + Q+   E  +V QE
Sbjct:   641 AQREKAELSRKVEELQACVETARQE----QHEAQAQVAELELQLRSEQQKATEKERVAQE 696

Query:   563 IELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLID 622
              + Q + +LQ L  S +  K + EEE   AA    E Q+ I+ L  + RSLV        
Sbjct:   697 KD-QLQEQLQALKESLKVTKGSLEEEKRRAADALEEQQRCISELKAETRSLVEQHK---R 752

Query:   623 SEKPLEHTGEGKNGGES 639
               K LE    G+ G E+
Sbjct:   753 ERKELEEERAGRKGLEA 769

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

ZFIN|ZDB-GENE-050531-1 myh11a "myosin, heavy polypeptide 11, smooth muscle a" [Danio rerio (taxid:7955)]

 Score = 101 (40.6 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
 Identities = 45/216 (20%), Positives = 81/216 (37%)

Query:   408 MRAEKSELEMDLKESQRRLETSQNXXXXXXXXXXXXXXXXXFANKSKQAVEVEMKAAIAA 467
             + A K +LE DLK+ + ++ETS                      +         +  +++
Sbjct:  1613 LAASKKKLEGDLKDLEGQIETSNKGRDEAIKQLRKLQAQMKDFQRELDDAHAAREEVLSS 1672

Query:   468 RGVAESKLSVVEAEM---KTQLALANXXXXXXXXXXXXXXXXXXXXXXRLRAVEAEMETL 524
                 E K   +EAE+   +  LA A                          A+  E   L
Sbjct:  1673 AKENERKAKTLEAELLQLQEDLAAAERAKKQVEAERDELADELASNASGKSALSDEKRRL 1732

Query:   525 RSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ------HEVKLQYLAGSN 578
              +K+  LE+E+E+E+   E      +KS  ++ ++  E++ +      +E   Q +   N
Sbjct:  1733 EAKIQQLEEELEEEQGNMEMLNDRLRKSAQQVDQLTNELQAERTTSQKNESARQLMERQN 1792

Query:   579 QELKINQEEELAVAASKF----AECQKTIASLGRQL 610
             +ELK   +E      SKF    +  +  +A L  QL
Sbjct:  1793 KELKAKLQEMENQVKSKFKSSISALEAKVAQLEEQL 1828

GO:0016459 "myosin complex" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030860 "regulation of polarized epithelial cell differentiation" evidence=IMP

GO:0048546 "digestive tract morphogenesis" evidence=IMP

GO:0048565 "digestive tract development" evidence=IMP

GO:0003779 "actin binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q14980 NUMA1 "Nuclear mitotic apparatus protein 1" [Homo sapiens (taxid:9606)]

 Score = 104 (41.7 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
 Identities = 51/197 (25%), Positives = 83/197 (42%)

Query:   450 ANKSKQAVEVEMKAAIAARGVAESKLSVVEAE-------MKTQLALANXXXXXXXXXXXX 502
             A +   A E E +A++  R  A  +L  +E E       ++ QL +AN            
Sbjct:   582 AQQLATAAE-EREASLRERDAALKQLEALEKEKAAKLEILQQQLQVANEARDSAQTSVTQ 640

Query:   503 XXXXXXXXXXRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
                       ++  ++A +ET R +    + E + + A  E  + + Q+   E  +V QE
Sbjct:   641 AQREKAELSRKVEELQACVETARQE----QHEAQAQVAELELQLRSEQQKATEKERVAQE 696

Query:   563 IELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLID 622
              + Q + +LQ L  S +  K + EEE   AA    E Q+ I+ L  + RSLV        
Sbjct:   697 KD-QLQEQLQALKESLKVTKGSLEEEKRRAADALEEQQRCISELKAETRSLVEQHK---R 752

Query:   623 SEKPLEHTGEGKNGGES 639
               K LE    G+ G E+
Sbjct:   753 ERKELEEERAGRKGLEA 769

GO:0051301 "cell division" evidence=IEA

GO:0000132 "establishment of mitotic spindle orientation" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0060487 "lung epithelial cell differentiation" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0016363 "nuclear matrix" evidence=IEA

GO:0000922 "spindle pole" evidence=IDA

GO:0000090 "mitotic anaphase" evidence=TAS

GO:0005198 "structural molecule activity" evidence=TAS

GO:0005819 "spindle" evidence=TAS

GO:0005876 "spindle microtubule" evidence=TAS

GO:0006997 "nucleus organization" evidence=TAS

GO:0000086 "G2/M transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

CGD|CAL0003255 SMC6 [Candida albicans (taxid:5476)]

 Score = 104 (41.7 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
 Identities = 27/98 (27%), Positives = 53/98 (54%)

Query:   513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQ 572
             +++ +  E E LRSK   ++ E+E  +  +++NI      K+++++ + +IE Q   ++Q
Sbjct:   395 QIKDIVEEFEGLRSKRSEMKSELEINKKETKKNIDEMNSLKEDITRTETKIE-QERRRIQ 453

Query:   573 YLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQL 610
              L G N+E      EEL    S+  E +  + +L +QL
Sbjct:   454 ELQGGNKE---KMAEELEKLNSEIDELESQLENLKKQL 488

GO:0003684 "damaged DNA binding" evidence=IEA

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0035861 "site of double-strand break" evidence=IEA

GO:0030915 "Smc5-Smc6 complex" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0051276 "chromosome organization" evidence=IEA

GO:0071139 "resolution of recombination intermediates" evidence=IEA

GO:0000724 "double-strand break repair via homologous recombination" evidence=IEA

UNIPROTKB|Q9BTE9 NUMA1 "Nuclear mitotic apparatus protein 1, isoform CRA_e" [Homo sapiens (taxid:9606)]

 Score = 91 (37.1 bits), Expect = 0.00019, Sum P(2) = 0.00019
 Identities = 28/101 (27%), Positives = 53/101 (52%)

Query:   518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDEL-SKVKQEIELQHEVK-LQYLA 575
             + E + L++++  L+ ++ ++   +E      +K+K    +K +Q  ELQ +++ L+ L 
Sbjct:   447 QQEAQRLQAQLNELQAQLSQKEQAAEHYKLQMEKAKTHYDAKKQQNQELQEQLRSLEQLQ 506

Query:   576 GSNQELKINQEE---ELAVAASKFAECQKTIASLGRQLRSL 613
               N+EL+   E    EL  A  K  E ++T   L  Q+RSL
Sbjct:   507 KENKELRAEAERLGHELQQAGLKTKEAEQTCRHLTAQVRSL 547

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MA92	FPP3_ARATH	No assigned EC number	0.4635	0.8678	0.9186	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	651
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	3e-51
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	2e-21
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-13
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-10
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-09
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-08
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	8e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	8e-08
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-07
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	3e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-07
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	1e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-06
pfam05911	767	pfam05911, DUF869, Plant protein of unknown functi	3e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	6e-06
pfam09726	680	pfam09726, Macoilin, Transmembrane protein	6e-06
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	7e-06
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	9e-06
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	2e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	2e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	4e-05
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	4e-05
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	6e-05
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
COG1579	239	COG1579, COG1579, Zn-ribbon protein, possibly nucl	2e-04
pfam02463	1162	pfam02463, SMC_N, RecF/RecN/SMC N terminal domain	3e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	3e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	4e-04
TIGR01843	423	TIGR01843, type_I_hlyD, type I secretion membrane	4e-04
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	7e-04
COG0419	908	COG0419, SbcC, ATPase involved in DNA repair [DNA	9e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.001
PTZ00121	2084	PTZ00121, PTZ00121, MAEBL; Provisional	0.001
COG4942	420	COG4942, COG4942, Membrane-bound metallopeptidase	0.001
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.002
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.004
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	0.004
PRK02224	880	PRK02224, PRK02224, chromosome segregation protein	0.004

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score =  189 bits (481), Expect = 3e-51
 Identities = 114/211 (54%), Positives = 147/211 (69%), Gaps = 23/211 (10%)

Query: 79  KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQ 138
           KE LVKQHAKVAEEAVSGWEKAE E + LKQQL+  + K  A E+R SHLDGALKEC+RQ
Sbjct: 1   KEALVKQHAKVAEEAVSGWEKAEAEAAALKQQLEDVTLKKLAAEDRASHLDGALKECMRQ 60

Query: 139 LRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD------- 191
           LRQ REEQEQ+IQ+  +++  EWE  K+ELE KL++LQK+L  A +E  A +        
Sbjct: 61  LRQVREEQEQKIQDAATEKTKEWEKVKAELEKKLLELQKELARAAAENDALSRSLQEKSK 120

Query: 192 ----------------RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAET 235
                            DL ++LE+AEK+NS+LK E+  L KELE+R  ER++S ++A+ 
Sbjct: 121 MIMELSEEKSRAESEIEDLKARLESAEKENSSLKYEVHVLSKELEIRNEERNMSLQSADA 180

Query: 236 ASKQHLESIKKLAKVEAECLRLKAVVRKASP 266
           ASKQHLE +KK+AK+EAEC RL+ +VRK  P
Sbjct: 181 ASKQHLEGVKKIAKLEAECQRLRGLVRKRLP 211

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 98.9 bits (246), Expect = 2e-21
 Identities = 79/240 (32%), Positives = 124/240 (51%), Gaps = 47/240 (19%)

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           E  I +  EV         EELE +++EK  L+ +L + +  LE S+N+L+E E KLEE 
Sbjct: 575 EKEINSPDEVKGAVCISTLEELETLKSEKENLDGELSKCKDDLEESKNKLQETEKKLEE- 633

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
                                                 +K++L  + +S   AE ++K  
Sbjct: 634 --------------------------------------LKSELDASQESNSLAETQLKCM 655

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI 563
               E+ E R + +EAE ++L+ K+ SLEDE+EKER   +E IA  ++ ++++ + +QE 
Sbjct: 656 VESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEE 715

Query: 564 ELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDS 623
            +Q            +E KI QE+E+A AA K AECQ+TI SLG+QL+SL   ++FL+DS
Sbjct: 716 NMQKL--------DEEEQKIKQEKEIAAAAEKLAECQETILSLGKQLQSLAPPEEFLLDS 767

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 72.0 bits (177), Expect = 6e-13
 Identities = 57/214 (26%), Positives = 109/214 (50%), Gaps = 6/214 (2%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
            ELEE+LE +R E SELE +++E Q+ L    N++   E + + L  +LA   +  + +E
Sbjct: 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELE 322

Query: 459 VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            +++   +       +L    AE++ +L    +  ++ E E++  +++ E  ESRL  +E
Sbjct: 323 AQLEELESKLDELAEEL----AELEEKLEELKEELESLEAELEELEAELEELESRLEELE 378

Query: 519 AEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSN 578
            ++ETLRSKV  LE ++       E   A  ++ +D   +++QEIE +   KL+      
Sbjct: 379 EQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIE-ELLKKLEEAELKE 437

Query: 579 QELKINQ-EEELAVAASKFAECQKTIASLGRQLR 611
            + ++ + EEEL     +    ++ +  L  +L 
Sbjct: 438 LQAELEELEEELEELQEELERLEEALEELREELE 471

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 64.0 bits (156), Expect = 2e-10
 Identities = 67/249 (26%), Positives = 122/249 (48%), Gaps = 13/249 (5%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
            A    ++ EL+ L +    LE+ LE +R +  ELE  L+E +R L   + +L++ + +L
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
           EELE +L    +  + ++  ++         E  L    A++K ++    + +QA +EE+
Sbjct: 740 EELEEELEELEEELEELQERLEELEEELESLEEAL----AKLKEEIEELEEKRQALQEEL 795

Query: 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560
           +  + + E AE RL A+E E+E+L  +   LE E+E+     EE      + ++EL +++
Sbjct: 796 EELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELE 855

Query: 561 QEIELQHE---------VKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLR 611
           +E+E   E          +L+      +E K   EEEL    S+ AE ++ I  L  +L 
Sbjct: 856 KELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLE 915

Query: 612 SLVTLDDFL 620
            L    + L
Sbjct: 916 ELEAKLERL 924

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 58.6 bits (142), Expect = 8e-09
 Identities = 55/235 (23%), Positives = 108/235 (45%), Gaps = 2/235 (0%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
             +   ++ EL  L     EL+EELE    E  EL+ +L+E +  LE  Q +L E + ++
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
           EELE +++   +  + +E E++         + K+  ++ E++ +  L  + +Q   E  
Sbjct: 298 EELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELE 357

Query: 501 KSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK 560
           ++ +  +E   + L  +E   E LR ++  LE E+ + R   EE     +  ++ L ++ 
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLS 417

Query: 561 QEIELQHEVKLQYLAGSNQELKINQE--EELAVAASKFAECQKTIASLGRQLRSL 613
           + +E   E   +  A   +     +E  EEL     +  E +  +  L R+L  L
Sbjct: 418 ERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRDRLKELERELAEL 472

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 58.2 bits (141), Expect = 1e-08
 Identities = 48/206 (23%), Positives = 91/206 (44%), Gaps = 5/206 (2%)

Query: 387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
            + E   L+     LE + E +  + + LE +L++    +   + +L+E E  LEEL  +
Sbjct: 221 REYEGYELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKK 280

Query: 447 LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSK 506
           +       +  ++ +K  I       + L    AE + +L  A +     E E+    ++
Sbjct: 281 I---KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAE 337

Query: 507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE-L 565
            E  E  +       + L  +   L++E+E  RA  EE    F +++DEL   ++++E L
Sbjct: 338 IEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKL 397

Query: 566 QHEV-KLQYLAGSNQELKINQEEELA 590
           + E+ +L+      QE      EELA
Sbjct: 398 KREINELKRELDRLQEELQRLSEELA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 7e-08
 Identities = 56/232 (24%), Positives = 116/232 (50%), Gaps = 5/232 (2%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441
            + + + A+L+ L     ELEEEL  +  E  EL+ +L+E+++ +E  +++L+E   +LE
Sbjct: 225 LELALLLAKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELE 284

Query: 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVK 501
           EL+ +L      ++  E+E + ++    + E +  + E E +  L    +  +A +EE++
Sbjct: 285 ELQEEL--LELKEEIEELEGEISLLRERLEELENELEELEER--LEELKEKIEALKEELE 340

Query: 502 SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ 561
             ++  E  E  L  +E   E L  K+ +L +E+E+      E +A  +    E+    +
Sbjct: 341 ERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELE 400

Query: 562 EIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
           E++ + E   + L   ++ L+ + +EEL    ++  E Q  +  L  +L  L
Sbjct: 401 ELKREIESLEERLERLSERLE-DLKEELKELEAELEELQTELEELNEELEEL 451

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 8e-08
 Identities = 50/218 (22%), Positives = 101/218 (46%), Gaps = 8/218 (3%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
            ELEE++E +  + +ELE  L E ++ LE  + +L++   +LEEL  Q++   K    +E
Sbjct: 680 EELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLE 739

Query: 459 VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            E++           +L+ +EAE++       +    AEEE+  A+++ E  E+++  ++
Sbjct: 740 AEVEQLEERIAQLSKELTELEAEIEELEERLEE----AEEELAEAEAEIEELEAQIEQLK 795

Query: 519 AEMETLRSKVISLEDEVEKERALS---EENIANFQKSKDELSKVKQEIELQHEVKLQYLA 575
            E++ LR  +  L  E+      +    E + + ++      +  +++E Q E   + + 
Sbjct: 796 EELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIE 855

Query: 576 GSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
               E++   EE +    S+        ASL   L  L
Sbjct: 856 SLAAEIE-ELEELIEELESELEALLNERASLEEALALL 892

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 55.4 bits (134), Expect = 8e-08
 Identities = 51/217 (23%), Positives = 101/217 (46%), Gaps = 6/217 (2%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
           AEL +ELE +  E  +L  +L+E  R++   +  L   E ++E+LE ++A  +K    +E
Sbjct: 701 AELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELE 760

Query: 459 VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            E++        AE +L+  EAE++   A   +     +EE+K+ +   +   + L  + 
Sbjct: 761 AEIEELEERLEEAEEELAEAEAEIEELEAQIEQ----LKEELKALREALDELRAELTLLN 816

Query: 519 AEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV--KLQYLAG 576
            E   LR ++ SLE  +       E+     ++  +++  +  EIE   E+  +L+    
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876

Query: 577 SNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
           +    + + EE LA+  S+  E  + +  L  +   L
Sbjct: 877 ALLNERASLEEALALLRSELEELSEELRELESKRSEL 913

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 55.5 bits (134), Expect = 8e-08
 Identities = 51/229 (22%), Positives = 103/229 (44%), Gaps = 18/229 (7%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
            ++   ++ ELE L     EL+EE+E +  E S L   L+E +  LE  + +L+E + K+
Sbjct: 273 KSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKI 332

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKT--------------QL 486
           E L+ +L       + +E  +     A+   E KLS +  E++               +L
Sbjct: 333 EALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAEL 392

Query: 487 ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546
           A      +  + E++S + + E    RL  ++ E++ L +++  L+ E+E+     EE  
Sbjct: 393 AEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELE 452

Query: 547 ANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASK 595
              ++ +D L ++++E+    E     L    +EL   +     + A +
Sbjct: 453 EQLEELRDRLKELERELAELQEE----LQRLEKELSSLEARLDRLEAEQ 497

Length = 1163

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 54.3 bits (131), Expect = 2e-07
 Identities = 43/187 (22%), Positives = 89/187 (47%), Gaps = 5/187 (2%)

Query: 381  NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
                  ++ E+E L     ELEE+L+ +  E  ELE +L+E +  LE  + + +E E +L
Sbjct: 820  EQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDEL 879

Query: 441  EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEV 500
            +ELE +     +  + +E E+            +L  +EA+++       + ++  EEE 
Sbjct: 880  KELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEY 939

Query: 501  KSAKSKKEAAESRLRAVEAEMETLR---SKVISLEDEVEKERALSEENIANFQKSKDELS 557
            +     +   E  +  +E E+E L     + I   +EVE+     +    + +++K++L 
Sbjct: 940  EDTLETE--LEREIERLEEEIEALGPVNLRAIEEYEEVEERYEELKSQREDLEEAKEKLL 997

Query: 558  KVKQEIE 564
            +V +E++
Sbjct: 998  EVIEELD 1004

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 53.5 bits (129), Expect = 3e-07
 Identities = 60/263 (22%), Positives = 120/263 (45%), Gaps = 29/263 (11%)

Query: 395 IHRTAELEEELENMRAEKSELE-----MDLKESQRRLETSQNQLKEAELKLEELETQLA- 448
           + R AE  E  + ++AE  ELE     + L+E +  LE  Q +LKEAE +LEEL  +L  
Sbjct: 205 LERQAEKAERYKELKAELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQE 264

Query: 449 ----FANKSKQAVEVEMKAAIAARGVAE-----SKLSVVEAEMKTQLALANKSKQAAEEE 499
                     +  E+E +     + +       S+L   +  ++ +LA   +  +  E +
Sbjct: 265 LEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQ 324

Query: 500 VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
           ++  +SK +     L  +E ++E L+ ++ SLE E+E+  A  EE  +  ++ +++L  +
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384

Query: 560 KQEI-ELQHEV------------KLQYLAGSNQELKINQEEELAVAAS-KFAECQKTIAS 605
           + ++ +L+ ++            +L+ L    + L+   EE L      +  E Q  +  
Sbjct: 385 RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEE 444

Query: 606 LGRQLRSLVTLDDFLIDSEKPLE 628
           L  +L  L    + L ++ + L 
Sbjct: 445 LEEELEELQEELERLEEALEELR 467

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 52.0 bits (125), Expect = 9e-07
 Identities = 50/232 (21%), Positives = 107/232 (46%), Gaps = 5/232 (2%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           S  AEL+ L  R   L+ EL ++++E   +E  L E  + L  +  ++ E E ++E+LE 
Sbjct: 671 SEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQ 730

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM-KTQLALANKSKQAAEEEVKSAK 504
           +     +  + +E ++ +        +S+L  +EA + + +  L    +   + E + + 
Sbjct: 731 EEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSH 790

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEK---ERALSEENIANFQKSKDELSKVKQ 561
           S+    ++ L  +E E+  + +++  +E ++ +   E+   E+ I   Q+ + +L +  +
Sbjct: 791 SRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIK 850

Query: 562 EIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
            IE + E          +EL+   E  L    S+  + +K    L  QLR L
Sbjct: 851 SIEKEIENLNGKKEELEEELE-ELEAALRDLESRLGDLKKERDELEAQLREL 901

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.6 bits (124), Expect = 1e-06
 Identities = 41/215 (19%), Positives = 91/215 (42%), Gaps = 6/215 (2%)

Query: 356 ERLAALPDTESRSFCVEVGPASDQPNADESSIKA---ELEVLIHRTAELEEELENMRAEK 412
           +++  L + E      ++G    +  + E SI     ELE    R A+LE E++ + AE 
Sbjct: 279 KKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEI 338

Query: 413 SELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAE 472
            ELE +++E ++R +    +  E + +LE+L  +L   +K       E+K         +
Sbjct: 339 EELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLK 398

Query: 473 SKLSVVEAEMKTQLALANKSKQA---AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI 529
            +++ ++ E+        +  +        +   ++K    E        E++    K+ 
Sbjct: 399 REINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLE 458

Query: 530 SLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            L  ++ K      +    + + + ELSK+++E+ 
Sbjct: 459 QLAADLSKYEQELYDLKEEYDRVEKELSKLQRELA 493

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 44/204 (21%), Positives = 93/204 (45%), Gaps = 4/204 (1%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           ++  E+  L  +   L E L N+  +  ELE  L+E + +L+    +L E E KLEEL+ 
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKE 351

Query: 446 Q---LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
           +   L    +  +A   E+++ +         L    A+++ Q+A  N   +  E  ++ 
Sbjct: 352 ELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLER 411

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLE-DEVEKERALSEENIANFQKSKDELSKVKQ 561
            + ++E  +  +  +  ++E    K +  E +E+E+E    +E +   +++ +EL +  +
Sbjct: 412 LEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELE 471

Query: 562 EIELQHEVKLQYLAGSNQELKINQ 585
           E E   +   + LA     L   +
Sbjct: 472 EAEQALDAAERELAQLQARLDSLE 495

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 8/186 (4%)

Query: 377 SDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA 436
            D+   + + ++ +LE L      LE ELE + AE  ELE  L+E + +LET ++++ + 
Sbjct: 332 LDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQL 391

Query: 437 ELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE--------AEMKTQLAL 488
           EL++  L  ++       + +E   +           KL   E         E++ +L  
Sbjct: 392 ELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEE 451

Query: 489 ANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN 548
             +  +  EE ++  + + E AE  L A E E+  L++++ SLE   E     SE   A 
Sbjct: 452 LQEELERLEEALEELREELEEAEQALDAAERELAQLQARLDSLERLQENLEGFSEGVKAL 511

Query: 549 FQKSKD 554
            +    
Sbjct: 512 LKNQSG 517

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 51.2 bits (123), Expect = 2e-06
 Identities = 41/190 (21%), Positives = 86/190 (45%), Gaps = 10/190 (5%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRL----ETSQNQLKEAE 437
             + +I+ +L  L     +L EE+  +     E+E  L+E  +++    E  Q ++KE  
Sbjct: 237 RQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKE-- 294

Query: 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQ 494
            K+ ELE ++A   +S    E E++ A       E+++  + AE+   + ++    K + 
Sbjct: 295 -KIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEEERKRRD 353

Query: 495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD 554
              EE    K + E   + L  V+ E    R ++    +++EK +    E      + ++
Sbjct: 354 KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQE 413

Query: 555 ELSKVKQEIE 564
           EL ++ +E+ 
Sbjct: 414 ELQRLSEELA 423

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869)

 Score = 50.3 bits (120), Expect = 3e-06
 Identities = 42/162 (25%), Positives = 58/162 (35%), Gaps = 25/162 (15%)

Query: 310 NECEPNSSTSWASALAIEPD----KNVKAVGRNVMVPSVDINLMDDFLEMERLAALPD-- 363
           N+ E + S SWASAL  E +    +            S ++ LMDDFLEME+LA LP   
Sbjct: 339 NDDEGSCSESWASALISELEQFKKEKGMGKSSKGTASSSEMELMDDFLEMEKLAMLPPES 398

Query: 364 -----TESRSFCVEVGPASDQPNADES--------------SIKAELEVLIHRTAELEEE 404
                  S   C +   A   P   E                   +L +  H  +E+ E 
Sbjct: 399 SADGSKVSSPKCSDSSVALTGPVEHEDNLESKLSDRLPEVLQSVLKLVMEKHIISEISEI 458

Query: 405 LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
           LE++ AE   LE          E +       E       +Q
Sbjct: 459 LEDIEAELDSLERSSNGDDENEEVAMVGSLVEESSAVIERSQ 500

This family consists of a number of sequences found in Arabidopsis thaliana, Oryza sativa and Lycopersicon esculentum (Tomato). The function of this family is unknown. Length = 767

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 50.1 bits (120), Expect = 4e-06
 Identities = 45/189 (23%), Positives = 90/189 (47%), Gaps = 4/189 (2%)

Query: 378 DQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437
           ++   +   ++ ELE L  + + L ++L  + AE  +LE  + +  + L   + +++E E
Sbjct: 708 EELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELE 767

Query: 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAE 497
            +LEE E +LA A    + +E +++            L  + AE    L L N+      
Sbjct: 768 ERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAE----LTLLNEEAANLR 823

Query: 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS 557
           E ++S + +  A E RL  +E ++E L   + SL  E+E+   L EE  +  +   +E +
Sbjct: 824 ERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERA 883

Query: 558 KVKQEIELQ 566
            +++ + L 
Sbjct: 884 SLEEALALL 892

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 49.3 bits (118), Expect = 5e-06
 Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 9/218 (4%)

Query: 410 AEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARG 469
           A  S+ +   +E++R+LE ++  L+  E  LEELE QL    +  +  E   +   A   
Sbjct: 165 AGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAE-RYQELKAELR 223

Query: 470 VAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVI 529
             E  L + +      L    K  +  EEE+   + + E  +  L   E E+E L+S++ 
Sbjct: 224 ELELALLLAK------LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELE 277

Query: 530 SLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAG--SNQELKINQEE 587
            L +E+E+ +    E     ++ + E+S +++ +E       +        +E     +E
Sbjct: 278 ELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKE 337

Query: 588 ELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEK 625
           EL    +   E ++ +A L      L      L++  +
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 49.3 bits (118), Expect = 6e-06
 Identities = 47/208 (22%), Positives = 97/208 (46%), Gaps = 8/208 (3%)

Query: 409 RAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468
           R E  ELE  ++E + ++   +  L E   +LEELE +L    K  + +  ++ A     
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDL 735

Query: 469 GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKV 528
              E+++  +E     ++A  +K     E E++  + + E AE  L   EAE+E L +++
Sbjct: 736 ARLEAEVEQLEE----RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQI 791

Query: 529 ISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQEL---KINQ 585
             L++E++  R   +E  A      +E + +++ +E   E ++       ++L       
Sbjct: 792 EQLKEELKALREALDELRAELTLLNEEAANLRERLE-SLERRIAATERRLEDLEEQIEEL 850

Query: 586 EEELAVAASKFAECQKTIASLGRQLRSL 613
            E++   A++  E ++ I  L  +L +L
Sbjct: 851 SEDIESLAAEIEELEELIEELESELEAL 878

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|220365 pfam09726, Macoilin, Transmembrane protein

 Score = 49.1 bits (117), Expect = 6e-06
 Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 26/257 (10%)

Query: 9   RRKSGGGAAGGETESSGSVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEK 68
              +   AA G   S  S S+     +   +     S A    P      N+S +    K
Sbjct: 313 TTSNSSSAAAGSIGSKSSKSAKHSNRNKSNSSPKSHSSANGSVPSSSVSDNESKQKRASK 372

Query: 69  LSAALLNVSAKEDLVKQHAKVAEEAV-------SGWEKAENELSTLKQQLKAASQKNSAL 121
            S+   +       +  +  V            S  E+ E ++  L+ +L+ A Q  S L
Sbjct: 373 SSSGARDSKKDASGMSANGTVENCIPENKISTPSAIERLEQDIKKLQAELQQARQNESEL 432

Query: 122 ENRVSHLD---GALKECVRQLRQAREEQEQRIQETVS-----KQNLEWESK--KSE---- 167
            N++S L     +LK  + QL++  +  + ++   VS     KQ+++   K  KSE    
Sbjct: 433 RNQISLLTSLERSLKSDLGQLKKENDMLQTKLNSMVSAKQKDKQSMQSMEKRLKSEADSR 492

Query: 168 --LESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSA---LKLELLSLVKELELR 222
              E +L + +K+ +  +  AA +A +   S+ E AE    A   L++E+  L  +L+L+
Sbjct: 493 VNAEKQLAEEKKRKKEEEETAARAAAQAAASREECAESLKQAKQDLEMEIKKLEHDLKLK 552

Query: 223 IVERDLSTKAAETASKQ 239
             E  +  K A+   K 
Sbjct: 553 EEECRMLEKEAQELRKY 569

This entry is a highly conserved protein present in eukaryotes. Length = 680

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 48.9 bits (117), Expect = 7e-06
 Identities = 55/238 (23%), Positives = 108/238 (45%), Gaps = 22/238 (9%)

Query: 397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE------------------L 438
           R  E E +LE        LE  L+E +++LE  + Q ++AE                   
Sbjct: 173 RKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLA 232

Query: 439 KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA---EMKTQLALANKSKQA 495
           KL+EL  +L    +    +E E++        AE ++  +++   E++ +L    +    
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292

Query: 496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555
            +EE++  + +      RL  +E E+E L  ++  L++++E  +   EE     ++ +  
Sbjct: 293 LKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQL 352

Query: 556 LSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
           L+++++  E + E KL  L    +EL     EELA   ++ AE +  +  L R++ SL
Sbjct: 353 LAELEEAKE-ELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESL 409

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 48.9 bits (117), Expect = 9e-06
 Identities = 46/213 (21%), Positives = 92/213 (43%), Gaps = 15/213 (7%)

Query: 381 NADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKL 440
                 +K EL  L      +E  L+ +  E S+    + E ++ +E  + + ++ + +L
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739

Query: 441 EELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM--------KTQLALANKS 492
           EELE  L+   +  + V+ E+K   A     E  L  +E  +         +++      
Sbjct: 740 EELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAE 799

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
               EEEV   +++    E +L  +  E E L  ++     E++++R   +E I + +K 
Sbjct: 800 LSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEI----QELQEQRIDLKEQIKSIEKE 855

Query: 553 KDELSKVKQEIELQ---HEVKLQYLAGSNQELK 582
            + L+  K+E+E +    E  L+ L     +LK
Sbjct: 856 IENLNGKKEELEEELEELEAALRDLESRLGDLK 888

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 47.4 bits (113), Expect = 2e-05
 Identities = 51/236 (21%), Positives = 110/236 (46%), Gaps = 8/236 (3%)

Query: 376 ASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKE 435
             ++ +   S+++ +L  L     +LEE +  +  E +ELE +++E + RLE ++ +L E
Sbjct: 720 ELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAE 779

Query: 436 AELKLEELETQLAFANKSKQAVE---VEMKAAIAARGVAESKLSVVEAEMKTQLALANKS 492
           AE ++EELE Q+    +  +A+     E++A +       + L      ++ ++A   + 
Sbjct: 780 AEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERR 839

Query: 493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKS 552
            +  EE+++      E+  + +  +E  +E L S++    + +  ERA  EE +A  +  
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESEL----EALLNERASLEEALALLRSE 895

Query: 553 KDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGR 608
            +ELS+  +E+E     +L+      +E     E  L     +    Q+ ++    
Sbjct: 896 LEELSEELRELE-SKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYS 950

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 47.8 bits (114), Expect = 2e-05
 Identities = 45/166 (27%), Positives = 79/166 (47%), Gaps = 6/166 (3%)

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
               +  L+ L      LE+  E +  E  ELE +++E + +L+  + +L+E E +LEEL
Sbjct: 802 LEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEEL 861

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
           + +L      K+ +E E+K     +   E +L  +E+E    LA   +  +   E ++  
Sbjct: 862 KEELEELEAEKEELEDELKELEEEKEELEEELRELESE----LAELKEEIEKLRERLEEL 917

Query: 504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANF 549
           ++K E  E  L  +E E+E       +LE E+E+E    EE I   
Sbjct: 918 EAKLERLEVELPELEEELEEEYE--DTLETELEREIERLEEEIEAL 961

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 42/227 (18%), Positives = 80/227 (35%), Gaps = 32/227 (14%)

Query: 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS 453
            I  +     EL+ +R     L+ +L   Q  L   +N+L E   +L +   ++      
Sbjct: 665 GILFSRSEPAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKI--GEIE 722

Query: 454 KQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR 513
           K+  ++E +       + E                        EE++ S + + E  +S 
Sbjct: 723 KEIEQLEQEEEKLKERLEEL-----------------------EEDLSSLEQEIENVKSE 759

Query: 514 LRAVEAEMETLRSKVISLEDEVEK-ERALSEENIANFQKSKDELSKVKQEIEL------Q 566
           L+ +EA +E L   +  LE+ +   E  LS   I   Q    +L +    IE       Q
Sbjct: 760 LKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQ 819

Query: 567 HEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
              +L       ++     +E+      +    +K I +L  +   L
Sbjct: 820 KLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEEL 866

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 46.6 bits (111), Expect = 4e-05
 Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 20/240 (8%)

Query: 390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF 449
           E E L     +LEE  E +R E +ELE +L+E++  +E  + +++E E ++EEL  +   
Sbjct: 343 EAESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGD 402

Query: 450 ANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEE--------EVK 501
           A       E  ++     R     + + +EA ++T      +++   E          V+
Sbjct: 403 APVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCPECGQPVE 462

Query: 502 SAKSKKEAAESRLRA--VEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
            +   +   E R R   +EAE+E L  +V  +E+ +E+   L E      ++ ++    +
Sbjct: 463 GSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAE-DRIERLEERREDL 521

Query: 560 KQEIELQHEV------KLQYLAGSNQELKINQEEELAVAA---SKFAECQKTIASLGRQL 610
           ++ I  + E       + + L     EL+   EE+   AA    +  E ++ +A L  +L
Sbjct: 522 EELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKL 581

Length = 880

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 46.2 bits (110), Expect = 6e-05
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 11/147 (7%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
           +++ EL  L    AE+  ELE ++ E   LE  L+    RLE  + +LKE E +LEEL+T
Sbjct: 380 ALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQT 439

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
           +L   N+  + +E +++                  E++ +LA   +  Q  E+E+ S ++
Sbjct: 440 ELEELNEELEELEEQLEELRDRL-----------KELERELAELQEELQRLEKELSSLEA 488

Query: 506 KKEAAESRLRAVEAEMETLRSKVISLE 532
           + +  E+  RA +     L +    L 
Sbjct: 489 RLDRLEAEQRASQGVRAVLEALESGLP 515

Length = 1163

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 44.3 bits (105), Expect = 2e-04
 Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 22/184 (11%)

Query: 384  ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
              SI+ E+E L  +  ELEEELE + A   +LE  L + ++  +  + QL+E E K+EEL
Sbjct: 849  IKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEEL 908

Query: 444  ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSA 503
            E Q+       +     +    A     E +LS +E                 +EE+   
Sbjct: 909  EAQI-------EKKRKRLSELKAKLEALEEELSEIEDPKG------------EDEEIPEE 949

Query: 504  KSKKEAAESRLRAVEAEMETLRS---KVISLEDEVEKERALSEENIANFQKSKDELSKVK 560
            +   E  ++ L+ VE E+  L       I   +EV K     +E  A  ++ +  + +  
Sbjct: 950  ELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERI 1009

Query: 561  QEIE 564
            +E E
Sbjct: 1010 EEYE 1013

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 23/180 (12%)

Query: 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
             +  E + L  R  E+ + L+  +AE   L   L+  +  LE  +NQ+ + E +++E+ 
Sbjct: 13  QKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQEIR 72

Query: 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
            ++                       AE KLS V+ E   +L   N   Q A+E + S +
Sbjct: 73  ERIK---------------------RAEEKLSAVKDE--RELRALNIEIQIAKERINSLE 109

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            +       +  +E E+E L+ ++  LE  + +  A  EE +A  ++   ELS  ++E++
Sbjct: 110 DELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELK 169

Length = 239

>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain

 Score = 43.8 bits (103), Expect = 3e-04
 Identities = 56/242 (23%), Positives = 100/242 (41%), Gaps = 12/242 (4%)

Query: 384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL 443
           +   + EL++L     EL+ EL  +   K + E  LKES++ L+  + +LK+ + ++EEL
Sbjct: 282 KKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEEL 341

Query: 444 ETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK-------TQLALANKSKQAA 496
           E +L      ++A E E +     +   E     + A+ K       +   L  +  +  
Sbjct: 342 EKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 401

Query: 497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS-----EENIANFQK 551
            EE K AK   E +E     ++ E +     V  LE+ +E ++        E      + 
Sbjct: 402 NEEEKEAKLLLELSEQEEDLLKEEKKEELKIVEELEESLETKQGKLTEEKEELEKQALKL 461

Query: 552 SKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLR 611
            KD+L   K E  L+    ++ L      L   + EE +   SK  E    + +L +   
Sbjct: 462 LKDKLELKKSEDLLKETKLVKLLEQLELLLLRQKLEEASQKESKAREGLAVLLALIKDGV 521

Query: 612 SL 613
            L
Sbjct: 522 GL 523

This domain is found at the N terminus of SMC proteins. The SMC (structural maintenance of chromosomes) superfamily proteins have ATP-binding domains at the N- and C-termini, and two extended coiled-coil domains separated by a hinge in the middle. The eukaryotic SMC proteins form two kind of heterodimers: the SMC1/SMC3 and the SMC2/SMC4 types. These heterodimers constitute an essential part of higher order complexes, which are involved in chromatin and DNA dynamics. This family also includes the RecF and RecN proteins that are involved in DNA metabolism and recombination. Length = 1162

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 43.6 bits (103), Expect = 3e-04
 Identities = 59/241 (24%), Positives = 106/241 (43%), Gaps = 26/241 (10%)

Query: 388 KAELEVLIHRTA--ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
             ELE L  +    +L+EEL  +     EL+ +L E  R L T + +L+E   +L+EL+ 
Sbjct: 542 LEELEELKEKLQLQQLKEELRQLEDRLQELK-ELLEELRLLRTRKEELEELRERLKELKK 600

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
           +L    +    +E  +++                     +L+ A    + AEEE++S   
Sbjct: 601 KLKELEERLSQLEELLQSL--------------------ELSEAENELEEAEEELESELE 640

Query: 506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIEL 565
           K          ++A +E L  KV  LE E+ +E     EN    ++  +EL ++++E+E 
Sbjct: 641 KLNLQAELEELLQAALEELEEKVEELEAEIRRE-LQRIENEEQLEEKLEELEQLEEELE- 698

Query: 566 QHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEK 625
           Q   +L+ L     E++    EEL    ++  E +K +  L + L  L  L + L  +  
Sbjct: 699 QLREELEELLKKLGEIE-QLIEELESRKAELEELKKELEKLEKALELLEELREKLGKAGL 757

Query: 626 P 626
            
Sbjct: 758 R 758

Length = 908

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 43.5 bits (103), Expect = 4e-04
 Identities = 40/193 (20%), Positives = 89/193 (46%), Gaps = 2/193 (1%)

Query: 30  LSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKV 89
           L ER ++ +    +      +     + + + +  L EKL      + + E  +++    
Sbjct: 307 LRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAE 366

Query: 90  AEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQR 149
            EE  S  E+ E +L TL+ ++     + ++L N +  L+  L+    +  + ++E E+ 
Sbjct: 367 LEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEEL 426

Query: 150 IQETVSKQNLEWESKKSELESKLVDLQKKLQT--AKSEAAASADRDLCSKLEAAEKQNSA 207
           +++    +  E +++  ELE +L +LQ++L+      E       +    L+AAE++ + 
Sbjct: 427 LKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486

Query: 208 LKLELLSLVKELE 220
           L+  L SL +  E
Sbjct: 487 LQARLDSLERLQE 499

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|130902 TIGR01843, type_I_hlyD, type I secretion membrane fusion protein, HlyD family

 Score = 43.1 bits (102), Expect = 4e-04
 Identities = 37/187 (19%), Positives = 71/187 (37%), Gaps = 23/187 (12%)

Query: 353 LEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHR-TAELEEELENMRAE 411
            E+ RL A  D++          A + P+   S+    +  LI    +  E     +RA+
Sbjct: 95  AEVARLRAEADSQ---------AAIEFPDDLLSAEDPAVPELIKGQQSLFESRKSTLRAQ 145

Query: 412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK--SKQAV--------EVEM 461
              +   +K+ +  L   Q QL+    +LE +  +L    K   K  V        E E 
Sbjct: 146 LELILAQIKQLEAELAGLQAQLQALRQQLEVISEELEARRKLKEKGLVSRLELLELERER 205

Query: 462 KAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEM 521
             A    G  E++L V++ +      L  + +Q  +   +    +   A++RL  +   +
Sbjct: 206 AEAQGELGRLEAELEVLKRQ---IDELQLERQQIEQTFREEVLEELTEAQARLAELRERL 262

Query: 522 ETLRSKV 528
              R ++
Sbjct: 263 NKARDRL 269

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins [Protein fate, Protein and peptide secretion and trafficking]. Length = 423

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 42.7 bits (101), Expect = 7e-04
 Identities = 49/197 (24%), Positives = 82/197 (41%), Gaps = 25/197 (12%)

Query: 420 KESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE 479
           KE++R+LE ++  L   E  L ELE QL   +  +QA              AE    +  
Sbjct: 175 KETERKLERTRENLDRLEDILNELERQLK--SLERQAE------------KAERYKELKA 220

Query: 480 AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER 539
              + +LAL     +   EE++  + + + AE  L  + AE++ L  K+  L  EV +  
Sbjct: 221 ELRELELALLVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELE 280

Query: 540 ALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQEL----------KINQEEEL 589
              EE         +E+S+++Q+ +     +L  L    +EL               EEL
Sbjct: 281 EEIEELQKELYALANEISRLEQQKQ-ILRERLANLERQLEELEAQLEELESKLDELAEEL 339

Query: 590 AVAASKFAECQKTIASL 606
           A    K  E ++ + SL
Sbjct: 340 AELEEKLEELKEELESL 356

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair]

 Score = 42.1 bits (99), Expect = 9e-04
 Identities = 53/206 (25%), Positives = 98/206 (47%), Gaps = 5/206 (2%)

Query: 383 DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
               ++ ELE  + R  +LEE ++ ++ E +EL   L+E Q  LE  + +L+E E +LEE
Sbjct: 369 RLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELEKELEELERELEE 428

Query: 443 LETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
           LE ++    +    +E   +  IA    A  K  V   E+  +           E E   
Sbjct: 429 LEEEIKKLEEQINQLE-SKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELE 487

Query: 503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE 562
            +  +E  E+ LR    E+E L  ++  LE+E+ +   L E      ++  ++L  + +E
Sbjct: 488 EELSREKEEAELR---EEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEE 544

Query: 563 IE-LQHEVKLQYLAGSNQELKINQEE 587
           +E L+ +++LQ L    ++L+   +E
Sbjct: 545 LEELKEKLQLQQLKEELRQLEDRLQE 570

Length = 908

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.0 bits (99), Expect = 0.001
 Identities = 30/160 (18%), Positives = 68/160 (42%), Gaps = 4/160 (2%)

Query: 385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
           + +K ELE L     E+++E    R E  +    L++ +R +   + +L   + +L+ L 
Sbjct: 360 AELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLS 419

Query: 445 TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
            +LA  N +   +E ++      +     ++   E +++             E+E+   K
Sbjct: 420 EELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQ----LAADLSKYEQELYDLK 475

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEE 544
            + +  E  L  ++ E+    ++  + E+ V   RA+ E 
Sbjct: 476 EEYDRVEKELSKLQRELAEAEAQARASEERVRGGRAVEEV 515

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional

 Score = 42.1 bits (98), Expect = 0.001
 Identities = 109/504 (21%), Positives = 192/504 (38%), Gaps = 26/504 (5%)

Query: 109  QQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL 168
             +LK A +K  A E + +       E  ++  +A++  E + +   +K+  +   KK+E 
Sbjct: 1281 DELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEE 1340

Query: 169  ESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDL 228
              K  +  K    A ++ A +A+     K EAAEK+    K +  +  K+ E +    + 
Sbjct: 1341 AKKAAEAAKAEAEAAADEAEAAEE----KAEAAEKKKEEAKKKADAAKKKAEEKKKADEA 1396

Query: 229  STKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQS 288
              KA E   K         AK +A+  + KA  +K +   + K+              ++
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEA 1456

Query: 289  DNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINL 348
               E     + +  K +D    + E       A   A E  K      +         + 
Sbjct: 1457 KKAEE-AKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEA-KKAAEAKKKADE 1514

Query: 349  MDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAEL----EVLIHRTAELEEE 404
                 E ++       E      E   A ++  ADE     EL    E      A+  EE
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574

Query: 405  LENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEEL---ETQLAFANKSKQAVEVEM 461
             +NM   K+E E    E  R  E  +   +E ++K EE    E     A + K+A E + 
Sbjct: 1575 DKNMALRKAE-EAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKK 1633

Query: 462  KAAIAARGVAES--KLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEA 519
            K     +  AE   K   ++   +     A +  + AEE+ K A+  K+A E   +A EA
Sbjct: 1634 KVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEA 1693

Query: 520  EM--ETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGS 577
                     K   L+ +  +E+  +EE     +++K +  + K+E E   +         
Sbjct: 1694 LKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKK--------K 1745

Query: 578  NQELKINQEEELAVAASKFAECQK 601
             +E K ++EE+  +A  K  E +K
Sbjct: 1746 AEEAKKDEEEKKKIAHLKKEEEKK 1769

Length = 2084

>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning]

 Score = 41.2 bits (97), Expect = 0.001
 Identities = 45/210 (21%), Positives = 87/210 (41%), Gaps = 15/210 (7%)

Query: 399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
           A LE+++   + ++++LE  LK  +  + + + QL E    L++L  Q+A  N    A+E
Sbjct: 48  AALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLNARLNALE 107

Query: 459 VEMK----------AAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKE 508
           V+ +          AA+   G       +V  E   +         A            +
Sbjct: 108 VQEREQRRRLAEQLAALQRSGRNPPPALLVSPEDAQRSVRLAIYYGALNPARAERIDALK 167

Query: 509 AAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHE 568
           A   +L AV AE+   ++++ +L  E   ++A   + +   +K+  +L+          +
Sbjct: 168 ATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQLNSELSA----DQ 223

Query: 569 VKLQYLAGSNQELKINQEEELAVAASKFAE 598
            KL+ L  +   LK N+      AA+K  E
Sbjct: 224 KKLEELRANESRLK-NEIASAEAAAAKARE 252

Length = 420

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 41.6 bits (98), Expect = 0.002
 Identities = 32/165 (19%), Positives = 69/165 (41%), Gaps = 6/165 (3%)

Query: 382 ADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLE 441
                ++  L  L     ELEE+L  +  E  EL   L+E    LE    +L E   +LE
Sbjct: 344 TLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELE---AELAEIRNELE 400

Query: 442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---KTQLALANKSKQAAEE 498
           EL+ ++    +  + +   ++         E++L  ++ E+     +L    +  +   +
Sbjct: 401 ELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEEQLEELRD 460

Query: 499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE 543
            +K  + +    +  L+ +E E+ +L +++  LE E    + +  
Sbjct: 461 RLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505

Length = 1163

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 39.6 bits (93), Expect = 0.002
 Identities = 18/95 (18%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 98  EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157
            + + EL+ L+++L    ++ + L+     L   L     +L + ++E   RI++  S  
Sbjct: 69  PELQQELAELQEELAELQEQLAELQQENQELKQELSTLEAELERLQKEL-ARIKQL-SAN 126

Query: 158 NLEWESKKSELESKLVDLQKKLQTAKSEAAASADR 192
            +E + +  EL  +L +L+++ +  ++E     + 
Sbjct: 127 AIELDEENRELREELAELKQENEALEAENERLQEN 161

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 36/162 (22%), Positives = 76/162 (46%), Gaps = 7/162 (4%)

Query: 60  DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNS 119
             ++ L E+L      +   E+ +++     +E     E+   E+S L+++++   ++  
Sbjct: 232 LRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELY 291

Query: 120 ALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKL 179
           AL N +S L+   +    +L     + E+     +  Q  E ESK  EL  +L +L++KL
Sbjct: 292 ALANEISRLEQQKQILRERLANLERQLEE-----LEAQLEELESKLDELAEELAELEEKL 346

Query: 180 QTAKSEAAASADR--DLCSKLEAAEKQNSALKLELLSLVKEL 219
           +  K E  +      +L ++LE  E +   L+ +L +L  ++
Sbjct: 347 EELKEELESLEAELEELEAELEELESRLEELEEQLETLRSKV 388

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 33/179 (18%), Positives = 76/179 (42%), Gaps = 12/179 (6%)

Query: 387  IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ 446
            ++ ++E L      L  E+E +     ELE +L+       + +  L     +LEEL  +
Sbjct: 843  LEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEE 902

Query: 447  LAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM-KTQLALANKSKQAAEEEVKSAKS 505
            L       + +E +             KL+ +E  +   ++ + N  ++ +EE   +   
Sbjct: 903  L-------RELESKRSELRRELEELREKLAQLELRLEGLEVRIDNLQERLSEEYSLTL-- 953

Query: 506  KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
              E AE+    +E + E  R ++  LE+++++   ++   I  +++ K+    +  + E
Sbjct: 954  --EEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYEELKERYDFLTAQKE 1010

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 32/132 (24%), Positives = 63/132 (47%), Gaps = 11/132 (8%)

Query: 386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELET 445
            +K EL+ L      L EEL ++ A  + +E  + E +   E    ++K+ E KLE+L  
Sbjct: 403 ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAA 462

Query: 446 QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
            L+   +    ++ E           E +LS    +++ +LA A    +A+EE V+  ++
Sbjct: 463 DLSKYEQELYDLKEEYDR-------VEKELS----KLQRELAEAEAQARASEERVRGGRA 511

Query: 506 KKEAAESRLRAV 517
            +E  ++ ++ V
Sbjct: 512 VEEVLKASIQGV 523

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 46/208 (22%), Positives = 94/208 (45%), Gaps = 15/208 (7%)

Query: 56  EVVNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAAS 115
           +   + ++ LT +L      +      V +  +  EE         NE+S L+QQ +   
Sbjct: 249 KEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILR 308

Query: 116 QKNSALENRVSHLDGALKECVRQLRQAREE---QEQRIQET------VSKQNLEWESKKS 166
           ++ + LE ++  L+  L+E   +L +  EE    E++++E       +  +  E E++  
Sbjct: 309 ERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELE 368

Query: 167 ELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELE-LRIVE 225
           ELES+L +L+++L+T +S+ A      L  ++ +   +   L+  L  L    E L+   
Sbjct: 369 ELESRLEELEEQLETLRSKVA-----QLELQIASLNNEIERLEARLERLEDRRERLQQEI 423

Query: 226 RDLSTKAAETASKQHLESIKKLAKVEAE 253
            +L  K  E   K+    +++L +   E
Sbjct: 424 EELLKKLEEAELKELQAELEELEEELEE 451

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 40.1 bits (94), Expect = 0.004
 Identities = 38/187 (20%), Positives = 86/187 (45%), Gaps = 12/187 (6%)

Query: 378 DQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE 437
            +  A+ S ++ E+  +  R  E+E++L  +  EK  LE +++E Q +    + Q+K  E
Sbjct: 794 PEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIE 853

Query: 438 LKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAE 497
            ++E L  +             E++  +     A   L     ++K +        +  E
Sbjct: 854 KEIENLNGKKE-----------ELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE 902

Query: 498 EEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELS 557
            +++  +++ E    RL  ++A++E L  ++  +ED   ++  + EE   + +  + EL 
Sbjct: 903 RKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEE-ELSLEDVQAELQ 961

Query: 558 KVKQEIE 564
           +V++EI 
Sbjct: 962 RVEEEIR 968

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional

 Score = 40.0 bits (94), Expect = 0.004
 Identities = 37/181 (20%), Positives = 74/181 (40%), Gaps = 3/181 (1%)

Query: 388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
           + E + ++    E  EELE + AE  +L   + E++R  E    ++++   +LEELE + 
Sbjct: 236 RDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEER 295

Query: 448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAK 504
                     + + +A  A R   E +   +     E +      N+  ++  E+    +
Sbjct: 296 DDLLAEAGLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLE 355

Query: 505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            + E        +E+E+E  R  V    +E+E+     EE    F  +  +L   +  +E
Sbjct: 356 ERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLE 415

Query: 565 L 565
            
Sbjct: 416 E 416

Length = 880

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	651
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	100.0
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	98.34
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	98.34
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	98.14
PF09730	717	BicD: Microtubule-associated protein Bicaudal-D; I	98.08
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.93
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.87
TIGR02169	1164	SMC_prok_A chromosome segregation protein SMC, pri	97.67
PRK02224	880	chromosome segregation protein; Provisional	97.57
PF00261	237	Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop	97.57
PRK02224	880	chromosome segregation protein; Provisional	97.47
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	97.44
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	97.27
TIGR02168	1179	SMC_prok_B chromosome segregation protein SMC, com	97.27
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	97.27
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	96.89
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.74
PF00038	312	Filament: Intermediate filament protein; InterPro:	96.62
PRK11637	428	AmiB activator; Provisional	96.54
PF05911	769	DUF869: Plant protein of unknown function (DUF869)	96.48
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.47
TIGR00606	1311	rad50 rad50. This family is based on the phylogeno	96.25
PRK09039	343	hypothetical protein; Validated	96.23
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	96.17
KOG0933	1174	consensus Structural maintenance of chromosome pro	96.05
KOG0971	1243	consensus Microtubule-associated protein dynactin	95.96
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.93
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	95.46
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	95.26
PRK03918	880	chromosome segregation protein; Provisional	95.19
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	95.16
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	95.13
KOG0250	1074	consensus DNA repair protein RAD18 (SMC family pro	94.91
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.86
PF05557	722	MAD: Mitotic checkpoint protein; InterPro: IPR0086	94.74
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	94.73
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	94.71
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	94.69
PF04849	306	HAP1_N: HAP1 N-terminal conserved region; InterPro	94.69
COG1579	239	Zn-ribbon protein, possibly nucleic acid-binding [	94.66
PRK04863	1486	mukB cell division protein MukB; Provisional	94.6
PF14662	193	CCDC155: Coiled-coil region of CCDC155	94.55
KOG4674	1822	consensus Uncharacterized conserved coiled-coil pr	94.07
PF01576	859	Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu	93.75
PF10174	775	Cast: RIM-binding protein of the cytomatrix active	93.71
KOG0996	1293	consensus Structural maintenance of chromosome pro	93.67
KOG0933	1174	consensus Structural maintenance of chromosome pro	93.48
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	93.48
KOG1029	1118	consensus Endocytic adaptor protein intersectin [S	93.27
KOG0996	1293	consensus Structural maintenance of chromosome pro	92.79
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	92.24
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.67
KOG0980	980	consensus Actin-binding protein SLA2/Huntingtin-in	90.91
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	89.87
PF15619	194	Lebercilin: Ciliary protein causing Leber congenit	89.7
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	89.45
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	89.38
PF04156	191	IncA: IncA protein; InterPro: IPR007285 Chlamydia	88.27
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	87.97
PF00038	312	Filament: Intermediate filament protein; InterPro:	87.95
KOG0964	1200	consensus Structural maintenance of chromosome pro	87.33
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	87.3
KOG0963	629	consensus Transcription factor/CCAAT displacement	87.19
PF15070	617	GOLGA2L5: Putative golgin subfamily A member 2-lik	86.66
KOG0995	581	consensus Centromere-associated protein HEC1 [Cell	86.64
KOG0963	629	consensus Transcription factor/CCAAT displacement	86.51
smart00787	312	Spc7 Spc7 kinetochore protein. This domain is foun	86.04
PF07926	132	TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro:	85.52
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.12
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	84.19
KOG1003	205	consensus Actin filament-coating protein tropomyos	83.73
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	83.39
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	83.29
KOG1003	205	consensus Actin filament-coating protein tropomyos	82.89
PF09755	310	DUF2046: Uncharacterized conserved protein H4 (DUF	82.84
KOG0999	772	consensus Microtubule-associated protein Bicaudal-	82.52
KOG0964	1200	consensus Structural maintenance of chromosome pro	82.22
KOG4807	593	consensus F-actin binding protein, regulates actin	81.95
PF08826	61	DMPK_coil: DMPK coiled coil domain like; InterPro:	81.94
PF00769	246	ERM: Ezrin/radixin/moesin family; InterPro: IPR011	81.93
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	81.76
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	81.71
PLN03229	762	acetyl-coenzyme A carboxylase carboxyl transferase	81.68
KOG0994	1758	consensus Extracellular matrix glycoprotein Lamini	81.65
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.59
TIGR03185	650	DNA_S_dndD DNA sulfur modification protein DndD. T	81.59
TIGR01843	423	type_I_hlyD type I secretion membrane fusion prote	81.16
PF10481	307	CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR0	80.77
PF08317	325	Spc7: Spc7 kinetochore protein; InterPro: IPR01325	80.49

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=100.00  E-value=1.2e-134  Score=1136.91  Aligned_cols=498  Identities=54%  Similarity=0.714  Sum_probs=431.0

Q ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Q 006305           79 KEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQN  158 (651)
Q Consensus        79 Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks  158 (651)
                      ||||||||+|||||||+||||||+||++||+|||+++++++++||||+||||||||||||||+|||||||+|||||+++|
T Consensus         1 k~~lvkqh~kvaeeav~gwekae~e~~~lk~~l~~~~~~~~~~e~r~~hld~aLkec~~qlr~~ree~eq~i~~~~~~~s   80 (769)
T PF05911_consen    1 KDDLVKQHAKVAEEAVSGWEKAEAEAASLKQQLEAATQQKLALEDRVSHLDGALKECMRQLRQVREEQEQKIHEAVAKKS   80 (769)
T ss_pred             CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhh-----------------------HHHHHHHHHHHHhhhhhhHHHHHh
Q 006305          159 LEWESKKSELESKLVDLQKKLQTAKSEAAASAD-----------------------RDLCSKLEAAEKQNSALKLELLSL  215 (651)
Q Consensus       159 ~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~-----------------------~~L~~rLes~EKen~sLkyE~~~l  215 (651)
                      +||++++.+||.+|.+++++|.++++||+++.+                       .+|+.||+++||||++|||||||+
T Consensus        81 ~e~e~~~~~le~~l~e~~~~l~~~~~e~~~l~~~l~~~~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~  160 (769)
T PF05911_consen   81 KEWEKIKSELEAKLAELSKRLAESAAENSALSKALQEKEKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVL  160 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999986654                       589999999999999999999999


Q ss_pred             hhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhhcCCCCC------------------C---CCCC
Q 006305          216 VKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTE------------------N---KSFT  274 (651)
Q Consensus       216 ~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK~lp~~d------------------~---rs~~  274 (651)
                      +|||+|||+||||++||||+|||||||||||||||||||||||+||||+||||.                  +   |+..
T Consensus       161 ~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaEC~rLr~l~rk~lpgpaa~a~mk~ev~~~~~~~~~~r~r~~~~  240 (769)
T PF05911_consen  161 SKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAECQRLRALVRKKLPGPAALAQMKNEVESLGRDSGENRRRRSPS  240 (769)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHhHHHHHHhccccccccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999983                  1   2322


Q ss_pred             C-Ccccc---cccCCCCCC---ccccccccccccc-------------------------cc------------------
Q 006305          275 P-SSIYV---GSFTDSQSD---NGERLLGNETDNC-------------------------KI------------------  304 (651)
Q Consensus       275 ~-ss~~~---~s~~d~~sd---~~erL~~~E~e~~-------------------------k~------------------  304 (651)
                      + ++++.   .+++.++.+   +++||++||+||+                         |+                  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~eeEnk~Lke~l~~k~~ELq~sr~~~a~ta~kL~~~e~ql~~~~~~~~e~~  320 (769)
T PF05911_consen  241 RPSSPHDFSPQNPQKRSKESEFLTERLQAMEEENKMLKEALAKKNSELQFSRNMYAKTASKLSQLEAQLKSSGQVSMELS  320 (769)
T ss_pred             cccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence            2 22222   222232222   3799999999973                         11                  


Q ss_pred             ------------Ccc-ccccCCCCCCCchhhhccCCCc--ccccccCCcc--cCCccccccchhHHHHHHhhcCCCCCCC
Q 006305          305 ------------SDS-EVNECEPNSSTSWASALAIEPD--KNVKAVGRNV--MVPSVDINLMDDFLEMERLAALPDTESR  367 (651)
Q Consensus       305 ------------s~~-~~~d~~~scsdSWAsALisELd--k~~k~~~~~~--~~~s~di~LMDDFlEMEkLA~l~~~~~~  367 (651)
                                  |.+ +++||++|||||||||||||||  |++|.++++.  +..++||+|||||||||||||+|.+.++
T Consensus       321 ~s~~~~~~~s~~s~se~~~dd~~s~s~SWAsaLiseldqfk~~k~~~~~~~~~~~~~~i~LMDDFlEmEkLA~~s~~~~~  400 (769)
T PF05911_consen  321 SSQNTSNPPSLTSMSEDGNDDEGSCSDSWASALISELDQFKNEKVISRSSSKTISSSDIDLMDDFLEMEKLAALSRDSSS  400 (769)
T ss_pred             cccCCCCCCchhcccccCCCCCCcccchhHHHHhchHHHhccccccccccccCCccccHHHHHHHHHHHHHHhcCCCCCC
Confidence                        122 3579999999999999999999  7888766654  5667899999999999999999976554


Q ss_pred             Cccc-cCCCCCCCCC-----------ccc-------------------------------------------------c-
Q 006305          368 SFCV-EVGPASDQPN-----------ADE-------------------------------------------------S-  385 (651)
Q Consensus       368 ~~~~-~~~~~~d~~~-----------~~~-------------------------------------------------~-  385 (651)
                      +++. ....+.+..+           ...                                                 . 
T Consensus       401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wLqsv~k~v~~q~~~s~i~~ILedI~~al~~~~~~~~~~~~~  480 (769)
T PF05911_consen  401 PSSCSSSEVDSDSSVTLESSSKRESVLESDKLSDRIPEWLQSVLKLVLEQKEVSKISEILEDIEIALDSINNSSNCDDDS  480 (769)
T ss_pred             CCCCCCccccccccccccccccccccccchhhcccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcccccccccc
Confidence            4332 2122111110           000                                                 0 


Q ss_pred             -c-------hH----------HHH--------------------------------------------------------
Q 006305          386 -S-------IK----------AEL--------------------------------------------------------  391 (651)
Q Consensus       386 -s-------l~----------~El--------------------------------------------------------  391 (651)
                       .       +.          .++                                                        
T Consensus       481 ~~~~~~~~sL~e~~~s~~~~s~eL~~avskIsEfv~~LekeVh~C~DLLsgkadLE~fieE~s~tLdwIls~~~SLqDv~  560 (769)
T PF05911_consen  481 EEYESMEASLVEESKSMIEISQELNVAVSKISEFVLVLEKEVHVCQDLLSGKADLERFIEEFSLTLDWILSNCFSLQDVS  560 (769)
T ss_pred             chhhhhhhhHHHHHHHHHhhcccHHHHHHhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence             0       00          011                                                        


Q ss_pred             ------------------------HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          392 ------------------------EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL  447 (651)
Q Consensus       392 ------------------------e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL  447 (651)
                                              ++.....+.++++|++|+++|.+|++.|.+|+++|+.++.+|++++++|++||++ 
T Consensus       561 s~~sEIK~~f~~~ss~e~E~~~~dea~~~~~~el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~e-  639 (769)
T PF05911_consen  561 SMRSEIKKNFDGDSSSEAEINSEDEADTSEKKELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSE-  639 (769)
T ss_pred             HHHHHHHHhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence                                    1122256778999999999999999999999999999999999999999999999 


Q ss_pred             HHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305          448 AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK  527 (651)
Q Consensus       448 ~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K  527 (651)
                                                            |..+++|++.+++||+|++++|+.+++|+..+++|++.|..|
T Consensus       640 --------------------------------------L~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e~E~~~l~~K  681 (769)
T PF05911_consen  640 --------------------------------------LESAKESNSLAETQLKAMKESYESLETRLKDLEAEAEELQSK  681 (769)
T ss_pred             --------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence                                                  777777779999999999999999999999999999999999


Q ss_pred             HhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHH
Q 006305          528 VISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLG  607 (651)
Q Consensus       528 i~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLG  607 (651)
                      |++|++||++||++|+|+.+||++||+||+|+++      +..++..+  +.|+|+|||||||+||+|||||||||++||
T Consensus       682 i~~Le~Ele~er~~~~e~~~kc~~Le~el~r~~~------~~~~~~~~--~~~~k~kqe~EiaaAA~KLAECQeTI~sLG  753 (769)
T PF05911_consen  682 ISSLEEELEKERALSEELEAKCRELEEELERMKK------EESLQQLA--NEDKKIKQEKEIAAAAEKLAECQETIASLG  753 (769)
T ss_pred             HHHHHHHHHHHHhcchhhhhHHHHHHHHHHhhhc------ccchhhcc--ccccccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999997      44444444  999999999999999999999999999999


Q ss_pred             HhhhhcccccccccCC
Q 006305          608 RQLRSLVTLDDFLIDS  623 (651)
Q Consensus       608 rQLKSLa~ledfl~d~  623 (651)
                      ||||||||++||++|+
T Consensus       754 kQLksLa~~~d~~~ds  769 (769)
T PF05911_consen  754 KQLKSLATPEDFLLDS  769 (769)
T ss_pred             HHHHhcCChhhhhccC
Confidence            9999999999999985

The function of this family is unknown.

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=98.34  E-value=0.016  Score=68.31  Aligned_cols=65  Identities=28%  Similarity=0.419  Sum_probs=28.3

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK  452 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane  452 (651)
                      ..+++.+..++..++.++..++.+...++..+..++.+++..+..+...+..+..++.++..+..
T Consensus       676 ~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  740 (1179)
T TIGR02168       676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEA  740 (1179)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444444444444444444444444433333333333333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=98.34  E-value=0.017  Score=68.48  Aligned_cols=50  Identities=30%  Similarity=0.418  Sum_probs=24.9

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAE  437 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE  437 (651)
                      +.++..+..++..++..++.+..+...++..+..++..+......+..+.
T Consensus       673 ~~~l~~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~  722 (1164)
T TIGR02169       673 PAELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIE  722 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555565555555555555555555555555444444433333333333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=98.14  E-value=0.053  Score=66.32  Aligned_cols=61  Identities=39%  Similarity=0.478  Sum_probs=35.9

Q ss_pred             HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA  450 (651)
Q Consensus       390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a  450 (651)
                      ++..+..++..++..+++...+-..+...+..+...+...+.++..+...+..+..++..+
T Consensus       668 ~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  728 (1163)
T COG1196         668 ELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAAL  728 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555566666666666666666666666666665555555555555555555555555433

>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []

Probab=98.08  E-value=0.049  Score=63.88  Aligned_cols=57  Identities=35%  Similarity=0.452  Sum_probs=53.6

Q ss_pred             HhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305          396 HRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK  452 (651)
Q Consensus       396 ~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane  452 (651)
                      +.+..|+..|..++.||..|-..|.++|.+|+.++..|.+...++..|-.+++....
T Consensus       265 ~EiqKL~qQL~qve~EK~~L~~~L~e~Q~qLe~a~~als~q~eki~~L~e~l~aL~~  321 (717)
T PF09730_consen  265 SEIQKLKQQLLQVEREKSSLLSNLQESQKQLEHAQGALSEQQEKINRLTEQLDALRK  321 (717)
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            478889999999999999999999999999999999999999999999999888766

Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.93  E-value=0.17  Score=64.80  Aligned_cols=197  Identities=23%  Similarity=0.369  Sum_probs=113.5

Q ss_pred             HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---
Q 006305          407 NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK---  483 (651)
Q Consensus       407 KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~---  483 (651)
                      ||+++-.+|++.|..++.......-+++-...-+-+||.+++.+.-+...+..++.       .+++|+..+++|+.   
T Consensus      1608 kle~di~elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~-------~aerr~~~l~~E~eeL~ 1680 (1930)
T KOG0161|consen 1608 KLEGDINELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLA-------EAERRLAALQAELEELR 1680 (1930)
T ss_pred             hhhcchHHHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            78888899999999998888888888888888888888888887777765554443       45677777777644   


Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305          484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI  563 (651)
Q Consensus       484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~  563 (651)
                      .-|..+...+..|+.++--..+-...+=++...+-.+=..|..+|..|+.+++.+=....-+.-+.++..-+..++..++
T Consensus      1681 ~~l~~~~Rarr~aE~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~~~~~~Er~kka~~~a~~~~~el 1760 (1930)
T KOG0161|consen 1681 EKLEALERARRQAELELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSELRAAEERAKKAQADAAKLAEEL 1760 (1930)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhHHHH
Confidence            44666666666555555433332222222222222222233333444444444443333333334444444444443322


Q ss_pred             HHHHHH------HHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305          564 ELQHEV------KLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL  613 (651)
Q Consensus       564 ~~~~e~------~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSL  613 (651)
                      ...|+.      .-......++|++++=. |+-.||-+-..  ++|+-|-.+...|
T Consensus      1761 ~~Eq~~~~~le~~k~~LE~~~kdLq~rL~-e~E~~a~~~~k--~~i~~Learir~L 1813 (1930)
T KOG0161|consen 1761 RKEQETSQKLERLKKSLERQVKDLQLRLD-EAEQAALKGGK--KQIAKLEARIREL 1813 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhhccH--HHHHHHHHHHHHH
Confidence            222222      22234456778877776 77777755554  6677666665544

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.87  E-value=0.0059  Score=61.98  Aligned_cols=216  Identities=24%  Similarity=0.345  Sum_probs=129.4

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~  465 (651)
                      .++.+++.+..++..++.+|+.........+..+.-.++.+......|.-++.+|...+..|..+......++-.+..++
T Consensus         5 ~l~~eld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE   84 (237)
T PF00261_consen    5 QLKDELDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLE   84 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777777777777666666666666666666666655555555555555556565555555555555555555


Q ss_pred             HhhhhhhhhhhhHHHHHHH---HHHHHHHhH-------HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305          466 AARGVAESKLSVVEAEMKT---QLALANKSK-------QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (651)
Q Consensus       466 ~~~~~~e~kl~~lE~Ei~~---eL~la~~s~-------~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei  535 (651)
                      ......+.|+..||..++.   .+.-+..-+       ...+..|..+.++...+|+++..++.++..+.+.+.+|+.-.
T Consensus        85 ~r~~~~eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~  164 (237)
T PF00261_consen   85 NREQSDEERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASE  164 (237)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhh
Confidence            5555556666665554332   222222112       234455556667788888888888888888888888887554


Q ss_pred             HHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHH
Q 006305          536 EKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASL  606 (651)
Q Consensus       536 ekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasL  606 (651)
                      .+==.--..+..+++.|.++|......++. -|..+........+    -|.+|...=.++..+++++...
T Consensus       165 ~~~~~re~~~e~~i~~L~~~lkeaE~Rae~-aE~~v~~Le~~id~----le~eL~~~k~~~~~~~~eld~~  230 (237)
T PF00261_consen  165 EKASEREDEYEEKIRDLEEKLKEAENRAEF-AERRVKKLEKEIDR----LEDELEKEKEKYKKVQEELDQT  230 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            422222266777888888888776653322 12222222222222    2346666667777777776543

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type

Probab=97.67  E-value=0.24  Score=58.92  Aligned_cols=66  Identities=21%  Similarity=0.375  Sum_probs=36.8

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN  451 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an  451 (651)
                      .+..+++.+..++..++..+..++.+...++..+..+...+.....++..++..+..+..++....
T Consensus       678 ~l~~~l~~l~~~l~~l~~~~~~~~~~l~~l~~~~~~~~~~~~~l~~~l~~~~~~l~~~~~~~~~l~  743 (1164)
T TIGR02169       678 RLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELE  743 (1164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555666666666666666666666666555555555555555555555444444444444444433

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.

>PRK02224 chromosome segregation protein; Provisional

Probab=97.57  E-value=0.31  Score=57.42  Aligned_cols=208  Identities=24%  Similarity=0.266  Sum_probs=99.4

Q ss_pred             HHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 006305          394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES  473 (651)
Q Consensus       394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~  473 (651)
                      +..++..++.+++.++.+...++..+..++..++.+-..+...+..+.+++.+++.++.....++..+.........+..
T Consensus       368 l~~~~~~~~~~l~~~~~~l~~l~~el~el~~~l~~~~~~~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~  447 (880)
T PRK02224        368 LESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARERVEEAEA  447 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444444455555555444444334455555555555555555554444443333222222111111


Q ss_pred             ----hhhh--------HH-----HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          474 ----KLSV--------VE-----AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (651)
Q Consensus       474 ----kl~~--------lE-----~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie  536 (651)
                          -.|-        .+     .++...+.-........+.+|..++..+..++..+. .+.++..+..+++.++..++
T Consensus       448 ~l~~~~Cp~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~e~l~~~~~-~~~~l~~l~~~~~~l~~~~~  526 (880)
T PRK02224        448 LLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVE-AEDRIERLEERREDLEELIA  526 (880)
T ss_pred             HHhcccCCCCCCcCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence                1110        00     012222222222333444455555555555555433 35566666666666666666


Q ss_pred             HHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhhhcc
Q 006305          537 KERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLV  614 (651)
Q Consensus       537 kER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLKSLa  614 (651)
                      .-+..-++...+|..|++++......+      .-+..      -.-.-+.++..+..++.+|.+.+..|-.+|..|-
T Consensus       527 ~~~e~le~~~~~~~~l~~e~~~l~~~~------~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~le  592 (880)
T PRK02224        527 ERRETIEEKRERAEELRERAAELEAEA------EEKRE------AAAEAEEEAEEAREEVAELNSKLAELKERIESLE  592 (880)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHH------HHHHH------HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555555666777777777776664321      11110      0011233445555667777777777766666665

>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.57  E-value=0.014  Score=59.24  Aligned_cols=156  Identities=32%  Similarity=0.398  Sum_probs=97.4

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhh-------hHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH--
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEK-------SELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV--  457 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK-------~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~--  457 (651)
                      ...|+..+..++..|+..|++.+.--       .+++..+.++.+.+....++....+.++..|..+|..+...-..+  
T Consensus        34 aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~~de~er~~k~lE~r~~~~eeri~~lE~~l~ea~~~~ee~e~  113 (237)
T PF00261_consen   34 AEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKRADESERARKVLENREQSDEERIEELEQQLKEAKRRAEEAER  113 (237)
T ss_dssp             HHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34577777777777777776655433       333444444555555556666666666666666666554444433  


Q ss_pred             ------------HHHHHHHHHhhhhhhhhhhhHHHHHHH------HHHHH----HHhHHHHHHHHHHHHhhHHHHHHHHH
Q 006305          458 ------------EVEMKAAIAARGVAESKLSVVEAEMKT------QLALA----NKSKQAAEEEVKSAKSKKEAAESRLR  515 (651)
Q Consensus       458 ------------E~el~a~~~~~~~~e~kl~~lE~Ei~~------eL~la----~~s~~~a~eelk~~~~k~~~lEs~l~  515 (651)
                                  +..+..++.....+++++.-|+.++..      .|..+    +.--...++.|+.+..+++.+|.|..
T Consensus       114 k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE~el~~~~~~lk~lE~~~~~~~~re~~~e~~i~~L~~~lkeaE~Rae  193 (237)
T PF00261_consen  114 KYEEVERKLKVLEQELERAEERAEAAESKIKELEEELKSVGNNLKSLEASEEKASEREDEYEEKIRDLEEKLKEAENRAE  193 (237)
T ss_dssp             HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                        333333333334455555555555431      12221    11123556678899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305          516 AVEAEMETLRSKVISLEDEVEKERALS  542 (651)
Q Consensus       516 ~~eaE~~~L~~Ki~~Le~EiekER~~s  542 (651)
                      .++..+..|...|+.|+.+|..++.-+
T Consensus       194 ~aE~~v~~Le~~id~le~eL~~~k~~~  220 (237)
T PF00261_consen  194 FAERRVKKLEKEIDRLEDELEKEKEKY  220 (237)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888643

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....

>PRK02224 chromosome segregation protein; Provisional

Probab=97.47  E-value=0.41  Score=56.39  Aligned_cols=30  Identities=27%  Similarity=0.264  Sum_probs=14.3

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhh
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMD  418 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEma  418 (651)
                      ..+..+..++.+|+..++.++..+..++..
T Consensus       475 ~~~~~~~~~~~~le~~l~~~~~~~e~l~~~  504 (880)
T PRK02224        475 ERVEELEAELEDLEEEVEEVEERLERAEDL  504 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444445555555555555544444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=97.44  E-value=0.6  Score=57.49  Aligned_cols=80  Identities=25%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             hhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhh-------hhhhhhhhcchhhHH
Q 006305           60 DSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQK-------NSALENRVSHLDGAL  132 (651)
Q Consensus        60 ~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~-------~~~~edrvshLD~AL  132 (651)
                      ..++.++.+|...-.+++.....+..+..--.++-..++..+.++..+...+......       ...++..+.++..-+
T Consensus       232 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~  311 (1163)
T COG1196         232 AKLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERL  311 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4677777788888888877777777777777788788888888888777777766322       223445555555555


Q ss_pred             HHHHHHH
Q 006305          133 KECVRQL  139 (651)
Q Consensus       133 KECmrQL  139 (651)
                      +....++
T Consensus       312 ~~~~~~~  318 (1163)
T COG1196         312 EELENEL  318 (1163)
T ss_pred             HHHHHHH
Confidence            5555443

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=97.27  E-value=1.2  Score=57.49  Aligned_cols=129  Identities=30%  Similarity=0.348  Sum_probs=81.6

Q ss_pred             HHHHHHHHHHHhHHHHHHHHHH---------------------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH---HH
Q 006305          481 EMKTQLALANKSKQAAEEEVKS---------------------AKSKKEAAESRLRAVEAEMETLRSKVISLEDE---VE  536 (651)
Q Consensus       481 Ei~~eL~la~~s~~~a~eelk~---------------------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E---ie  536 (651)
                      ||...|..||+-+..+.-+|+-                     +.+.+..+|-++..+++|+..|+.++..++..   .+
T Consensus      1615 elE~~ld~ank~~~d~~K~lkk~q~~~k~lq~~~e~~~~~~~e~~~q~~~aerr~~~l~~E~eeL~~~l~~~~Rarr~aE 1694 (1930)
T KOG0161|consen 1615 ELEIQLDHANKANEDAQKQLKKLQAQLKELQRELEDAQRAREELLEQLAEAERRLAALQAELEELREKLEALERARRQAE 1694 (1930)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            3455577777776655555531                     23558889999999999999999998887643   22


Q ss_pred             HHHhhcHH-----------HHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHH
Q 006305          537 KERALSEE-----------NIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIAS  605 (651)
Q Consensus       537 kER~~s~E-----------~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIas  605 (651)
                      -|+.-..|           ....=++||.+|.....+++-.+..    .. ...|.--|=..+++..+..|+.=|.|+.-
T Consensus      1695 ~e~~E~~e~i~~~~~~~s~l~~~KrklE~~i~~l~~elee~~~~----~~-~~~Er~kka~~~a~~~~~el~~Eq~~~~~ 1769 (1930)
T KOG0161|consen 1695 LELEELAERVNELNAQNSSLTAEKRKLEAEIAQLQSELEEEQSE----LR-AAEERAKKAQADAAKLAEELRKEQETSQK 1769 (1930)
T ss_pred             HHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHHHHHHH----HH-hhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            22222222           2234467888888887654321111    11 12222222235778888999999999998


Q ss_pred             HHHhhhhcc
Q 006305          606 LGRQLRSLV  614 (651)
Q Consensus       606 LGrQLKSLa  614 (651)
                      |-++.|+|-
T Consensus      1770 le~~k~~LE 1778 (1930)
T KOG0161|consen 1770 LERLKKSLE 1778 (1930)
T ss_pred             HHHHHHHHH
Confidence            888888774

>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type

Probab=97.27  E-value=0.72  Score=54.74  Aligned_cols=73  Identities=29%  Similarity=0.394  Sum_probs=37.7

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM  461 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el  461 (651)
                      .++..+..++..++..++.+..+...++..+..++.+++..+.++..++..+..++.++.........++.++
T Consensus       670 ~~~~~l~~e~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  742 (1179)
T TIGR02168       670 SSILERRREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEV  742 (1179)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444445555555555555555555555555555555555555555555555555555555444444444333

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=97.27  E-value=0.045  Score=52.39  Aligned_cols=86  Identities=22%  Similarity=0.374  Sum_probs=65.2

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~  465 (651)
                      .|++|.+.++.+...++.++..++.+-..++..+.-.+..+..+..+|-.++..|.+++..+.........++       
T Consensus         4 ~lk~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~~~~~~E-------   76 (143)
T PF12718_consen    4 ALKLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEKRKSNAE-------   76 (143)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhHH-------
Confidence            5889999999999999999999999988888888877777777777777777777777777666555443332       


Q ss_pred             HhhhhhhhhhhhHHHHH
Q 006305          466 AARGVAESKLSVVEAEM  482 (651)
Q Consensus       466 ~~~~~~e~kl~~lE~Ei  482 (651)
                          .+.+||.+||.++
T Consensus        77 ----~l~rriq~LEeel   89 (143)
T PF12718_consen   77 ----QLNRRIQLLEEEL   89 (143)
T ss_pred             ----HHHhhHHHHHHHH
Confidence                5667776666653

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=96.89  E-value=2.5  Score=54.35  Aligned_cols=476  Identities=20%  Similarity=0.262  Sum_probs=254.9

Q ss_pred             hhhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH---HHH
Q 006305           58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA---LKE  134 (651)
Q Consensus        58 ~~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A---LKE  134 (651)
                      +...|+.|+.-|.....+.+..+.       ..+|.+   .+..-|+..++.+|+...-...-+.+|..-|-..   +|.
T Consensus       634 ~e~~l~qLe~~le~~~~E~~~~~~-------~l~e~~---~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~  703 (1822)
T KOG4674|consen  634 KEKRLRQLENELESYKKEKRENLK-------KLQEDF---DSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKE  703 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            477889999999987777766543       334444   3456688899999988887777777887776654   455


Q ss_pred             HHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhHhhhhh--hHHHHHHHHHHHHhhhhhh
Q 006305          135 CVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAAASA--DRDLCSKLEAAEKQNSALK  209 (651)
Q Consensus       135 CmrQLr~~rEEqEqki~dav~kks~e~e~~~~el---E~kl~e~~~~L~~a~~e~~a~~--~~~L~~rLes~EKen~sLk  209 (651)
                      =|-.|+    ++-+.++..|.+.=+....+..+|   ..++.-+...+...+.|+....  ..-|..-++++    ...+
T Consensus       704 e~~tL~----er~~~l~~~i~~~~q~~~~~s~eL~~a~~k~~~le~ev~~LKqE~~ll~~t~~rL~~e~~~l----~~e~  775 (1822)
T KOG4674|consen  704 EVETLE----ERNKNLQSTISKQEQTVHTLSQELLSANEKLEKLEAELSNLKQEKLLLKETEERLSQELEKL----SAEQ  775 (1822)
T ss_pred             HHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHH
Confidence            555554    677778888777654444444444   4455555555555555554322  12344444444    4456


Q ss_pred             HHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccCCCCCC
Q 006305          210 LELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSD  289 (651)
Q Consensus       210 yE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~rK~lp~~d~rs~~~ss~~~~s~~d~~sd  289 (651)
                      |.++.+-..|++=..+++.+    ++|-|+-++  .+|-.|+-+.++|+.=......  +.|          +++.+.  
T Consensus       776 ~~L~~~l~~lQt~~~~~e~s----~~~~k~~~e--~~i~eL~~el~~lk~klq~~~~--~~r----------~l~~~~--  835 (1822)
T KOG4674|consen  776 ESLQLLLDNLQTQKNELEES----EMATKDKCE--SRIKELERELQKLKKKLQEKSS--DLR----------ELTNSL--  835 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHH----HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH--HHH----------HHHhhh--
Confidence            66777777777777777665    577788888  7889999999998765443221  111          111110  


Q ss_pred             cccccccccccccccCccccccCCCCCCCchhhhccCCCcccccccCCcccCCccccccc-hhHHHHHHhhcCCCCCCCC
Q 006305          290 NGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLM-DDFLEMERLAALPDTESRS  368 (651)
Q Consensus       290 ~~erL~~~E~e~~k~s~~~~~d~~~scsdSWAsALisELdk~~k~~~~~~~~~s~di~LM-DDFlEMEkLA~l~~~~~~~  368 (651)
                                               +..--||..+|.++...-...........++|+-| --.-+|++=-.......  
T Consensus       836 -------------------------~~~l~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~~~~~~~--  888 (1822)
T KOG4674|consen  836 -------------------------EKQLENAQNLVDELESELKSLLTSLDSVSTNIAKLEIKLSELEKRLKSAKTQL--  888 (1822)
T ss_pred             -------------------------hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH--
Confidence                                     11223444444433311000000000001111111 11112221111100000  


Q ss_pred             ccccCCCCCCCCCccccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          369 FCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLA  448 (651)
Q Consensus       369 ~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~  448 (651)
                      ...+.+                  ..+-++.-+...|++...+-..|...|..+..++...+...+-+++-|..+...++
T Consensus       889 ~~l~~~------------------~~~~d~~~~~~~Lr~~~eq~~~l~~~L~~a~s~i~~yqe~~~s~eqsl~~~ks~ld  950 (1822)
T KOG4674|consen  889 LNLDSK------------------SSNEDATILEDTLRKELEEITDLKEELTDALSQIREYQEEYSSLEQSLESVKSELD  950 (1822)
T ss_pred             hhcccc------------------chhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            000000                  00001111122222222222233333444444455555555556666555555544


Q ss_pred             HHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH---HHHHHHHHhHH----HHHHHHHHHH-------hhHHHHHHHH
Q 006305          449 FANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK---TQLALANKSKQ----AAEEEVKSAK-------SKKEAAESRL  514 (651)
Q Consensus       449 ~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~---~eL~la~~s~~----~a~eelk~~~-------~k~~~lEs~l  514 (651)
                      ...   ..++.+++.-......++.+|+.|+.+|.   .++.++.+..+    .+..+|.++.       .....+...+
T Consensus       951 e~~---~~~ea~ie~~~~k~tslE~~ls~L~~~~~~l~~e~~~~~k~~e~~~~~~~~e~~sl~ne~~~~~~~~s~~~~~~ 1027 (1822)
T KOG4674|consen  951 ETR---LELEAKIESLHKKITSLEEELSELEKEIENLREELELSTKGKEDKLLDLSREISSLQNELKSLLKAASQANEQI 1027 (1822)
T ss_pred             HHH---HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence            433   44455555555556666666666666544   33444444332    2233344433       3344555666


Q ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHH--hhhcCcchhhhhhHHHHHH
Q 006305          515 RAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIEL-QHEVKLQ--YLAGSNQELKINQEEELAV  591 (651)
Q Consensus       515 ~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~-~~e~~~~--~~~~~n~dlKiKQEkELA~  591 (651)
                      ..+...+.+....+...+..-+.|=..|.+...++.+|.+++..+..++.- --.....  .......+...++. -|- 
T Consensus      1028 ~~~k~dl~~~~~~~~~a~~~Ye~el~~ha~~~q~l~kl~ee~~~~~~e~~~Lk~~~~~~~~~l~e~~~~w~E~~~-~Le- 1105 (1822)
T KOG4674|consen 1028 EDLQNDLKTETEQLRKAQSKYESELVQHADLTQKLIKLREEFAKCNDELLKLKKSRESRHALLSEQERDWSEKED-ALE- 1105 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhHHhhcccchHHHHH-HHH-
Confidence            666777777777788889999999999999999999999999988854321 0000011  12222333333322 111 


Q ss_pred             HhhhhHHHHHHHHHHHHhhhhcccccccccCC
Q 006305          592 AASKFAECQKTIASLGRQLRSLVTLDDFLIDS  623 (651)
Q Consensus       592 AA~KLAECQkTIasLGrQLKSLa~ledfl~d~  623 (651)
                        .-+..|=+-|++|-.|.+.|-++=+-+.++
T Consensus      1106 --qe~~~~~~~~~~L~~qNslLh~qie~~s~~ 1135 (1822)
T KOG4674|consen 1106 --QEVNELKKRIESLEKQNSLLHDQFEELSQQ 1135 (1822)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence              336778888999999999997665544443

>TIGR00606 rad50 rad50

Probab=96.74  E-value=2.7  Score=52.57  Aligned_cols=142  Identities=15%  Similarity=0.226  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH------HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 006305          421 ESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA------AIAARGVAESKLSVVEAEMKTQLALANKSKQ  494 (651)
Q Consensus       421 e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a------~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~  494 (651)
                      .++.++......+...+..++++...+.........++.=+..      +..+...++.+|..++.++..--.  ..+..
T Consensus       748 ~l~~~l~~le~~l~~~~~~le~~~~~l~~~~~~~~~~esL~~~v~~i~r~~~ei~~l~~qie~l~~~l~~~~~--~~s~~  825 (1311)
T TIGR00606       748 ELRNKLQKVNRDIQRLKNDIEEQETLLGTIMPEEESAKVCLTDVTIMERFQMELKDVERKIAQQAAKLQGSDL--DRTVQ  825 (1311)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cCCHH
Confidence            3444444444444444444444444444444444444331111      122233444555444443331100  12334


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhh---HHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHH
Q 006305          495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISL---EDEVEKERALSEENIANFQKSKDELSKVKQEIE  564 (651)
Q Consensus       495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~L---e~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~  564 (651)
                      ..+.+|......+..+...+..+..+...+..+|..|   ..++..++.--.+.+.+..+|+++|...+.+..
T Consensus       826 ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~~klkl~~~l~~r~~le~~L~el~~el~  898 (1311)
T TIGR00606       826 QVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQ  898 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5566666667777777777777777777777777777   666777777767777788888888888876543

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=96.62  E-value=1.1  Score=46.54  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=48.3

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS  453 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneS  453 (651)
                      .+..++..+...+.++..+++...+....++..+..++..++.....-...++++.-|+.+|+.....
T Consensus        72 ~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~eEl~fl~~~  139 (312)
T PF00038_consen   72 RLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKEELEFLKQN  139 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHHHHHHHHhh
Confidence            44556666667777777777777777777777777777777777777777777777777777664433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PRK11637 AmiB activator; Provisional

Probab=96.54  E-value=1.4  Score=48.40  Aligned_cols=68  Identities=18%  Similarity=0.354  Sum_probs=33.3

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSK  454 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEm-------aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk  454 (651)
                      +..++..+..++..++.++..+..+..+++.       .|...+.+|.....++..++..+..++.++...+...
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~i~~~~~ei~~l~~eI~~~q~~l  119 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKLRETQNTLNQLNKQIDELNASIAKLEQQQ  119 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555444444444444       4444444444444455555555555555544444443

>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants

Probab=96.48  E-value=3  Score=49.91  Aligned_cols=153  Identities=27%  Similarity=0.349  Sum_probs=107.1

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAI  465 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~  465 (651)
                      .+..+++.+......|+..+.+.......+.+.|.+....|...+.+|.-+...-..+..|+.....++..++.++..++
T Consensus       593 el~eelE~le~eK~~Le~~L~~~~d~lE~~~~qL~E~E~~L~eLq~eL~~~keS~s~~E~ql~~~~e~~e~le~~~~~~e  672 (769)
T PF05911_consen  593 ELEEELEKLESEKEELEMELASCQDQLESLKNQLKESEQKLEELQSELESAKESNSLAETQLKAMKESYESLETRLKDLE  672 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            45668888888888888878777777777788888888888888888887777777788888888888888888888888


Q ss_pred             HhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcH--
Q 006305          466 AARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE--  543 (651)
Q Consensus       466 ~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~--  543 (651)
                      ++.+++-.|++.|++||.++-.+..+.-           .++..||-++.....+.......  .=+-.+.+|+.++.  
T Consensus       673 ~E~~~l~~Ki~~Le~Ele~er~~~~e~~-----------~kc~~Le~el~r~~~~~~~~~~~--~~~~k~kqe~EiaaAA  739 (769)
T PF05911_consen  673 AEAEELQSKISSLEEELEKERALSEELE-----------AKCRELEEELERMKKEESLQQLA--NEDKKIKQEKEIAAAA  739 (769)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcchhhh-----------hHHHHHHHHHHhhhcccchhhcc--ccccccchHHHHHHHH
Confidence            8999999999999999988866544322           12334555555444432211111  22234555555554  


Q ss_pred             HHHHHHHH
Q 006305          544 ENIANFQK  551 (651)
Q Consensus       544 E~~aKc~~  551 (651)
                      +=+|-|++
T Consensus       740 ~KLAECQe  747 (769)
T PF05911_consen  740 EKLAECQE  747 (769)
T ss_pred             HHHHHHHH
Confidence            34788876

The function of this family is unknown.

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.47  E-value=0.63  Score=54.84  Aligned_cols=218  Identities=24%  Similarity=0.379  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhhcch---hhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhh-HHHHHHHHH
Q 006305           99 KAENELSTLKQQLKAASQKNSALENRVSHL---DGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKK-SELESKLVD  174 (651)
Q Consensus        99 KAe~E~~slK~qLe~~~~~~~~~edrvshL---D~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~-~elE~kl~e  174 (651)
                      +-|+|+..||..|-..-+.--.|..+++.|   ++.||.|+.|||+--|+-+-||+..+..+  +-|+-- ..||.+|.+
T Consensus       422 rLE~dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aR--q~DKq~l~~LEkrL~e  499 (697)
T PF09726_consen  422 RLEADVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLVQAR--QQDKQSLQQLEKRLAE  499 (697)
T ss_pred             HHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHH
Confidence            789999999999999999988888896665   46799999999999999999999998854  444322 557888877


Q ss_pred             HHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhH----------HhHHhH
Q 006305          175 LQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASK----------QHLESI  244 (651)
Q Consensus       175 ~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asK----------QhlEsv  244 (651)
                      .+..-..                   +|++....|                 .-.+++.++|.+          -.-|..
T Consensus       500 E~~~R~~-------------------lEkQL~eEr-----------------k~r~~ee~~aar~~~~~~~~r~e~~e~~  543 (697)
T PF09726_consen  500 ERRQRAS-------------------LEKQLQEER-----------------KARKEEEEKAARALAQAQATRQECAESC  543 (697)
T ss_pred             HHHHHHH-------------------HHHHHHHHH-----------------HHHhHHHHhhhhccccchhccchhHHHH
Confidence            5443221                   122211111                 111111111111          233444


Q ss_pred             H-HHHHHHHHHHHHHHHhhhcCCCCCCCCCCCCcccccccCCCCCCcccccccccccccccCccccccCCCCCCCchhhh
Q 006305          245 K-KLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASA  323 (651)
Q Consensus       245 K-KiakLEaECqRLr~l~rK~lp~~d~rs~~~ss~~~~s~~d~~sd~~erL~~~E~e~~k~s~~~~~d~~~scsdSWAsA  323 (651)
                      | ++..||.||++||.=++.+                          .+++..+|.+.                      
T Consensus       544 r~r~~~lE~E~~~lr~elk~k--------------------------ee~~~~~e~~~----------------------  575 (697)
T PF09726_consen  544 RQRRRQLESELKKLRRELKQK--------------------------EEQIRELESEL----------------------  575 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHH----------------------
Confidence            3 7899999999999876642                          23333333111                      


Q ss_pred             ccCCCcccccccCCcccCCccccccchhHHHHHHhhcCCCCCCCCccccCCCCCCCCCccccchHHHHHHHHHhHHhHHH
Q 006305          324 LAIEPDKNVKAVGRNVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEE  403 (651)
Q Consensus       324 LisELdk~~k~~~~~~~~~s~di~LMDDFlEMEkLA~l~~~~~~~~~~~~~~~~d~~~~~~~sl~~Ele~~~~q~~eLEe  403 (651)
                        .+|.+                     |-                   .+  +   ...-..|-..|-+|+-+..-||+
T Consensus       576 --~~lr~---------------------~~-------------------~e--~---~~~~e~L~~aL~amqdk~~~LE~  608 (697)
T PF09726_consen  576 --QELRK---------------------YE-------------------KE--S---EKDTEVLMSALSAMQDKNQHLEN  608 (697)
T ss_pred             --HHHHH---------------------HH-------------------hh--h---hhhHHHHHHHHHHHHHHHHHHHH
Confidence              00000                     00                   00  0   00011344567777777777776


Q ss_pred             HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF  449 (651)
Q Consensus       404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~  449 (651)
                      -|--=--=|.+|=-+|-+++++|+....+++.-+..+.+|++.++.
T Consensus       609 sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~~  654 (697)
T PF09726_consen  609 SLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIAQ  654 (697)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6633223356688899999999999999999999999999998543

; GO: 0016021 integral to membrane

>TIGR00606 rad50 rad50

Probab=96.25  E-value=5.2  Score=50.19  Aligned_cols=26  Identities=23%  Similarity=0.543  Sum_probs=14.9

Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305          588 ELAVAASKFAECQKTIASLGRQLRSL  613 (651)
Q Consensus       588 ELA~AA~KLAECQkTIasLGrQLKSL  613 (651)
                      +|....+-+.+||..|..+..++..|
T Consensus       978 el~~~~~~ie~le~e~~~l~~~i~~l 1003 (1311)
T TIGR00606       978 ELNTVNAQLEECEKHQEKINEDMRLM 1003 (1311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55555555566666666666555544

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PRK09039 hypothetical protein; Validated

Probab=96.23  E-value=0.8  Score=49.51  Aligned_cols=138  Identities=14%  Similarity=0.199  Sum_probs=95.2

Q ss_pred             HHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q 006305          404 ELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK  483 (651)
Q Consensus       404 KlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~  483 (651)
                      .+...+.+-..|+..+...-+.|..-+.+...++..+.+|+.+++.++..+..++..+.........++.++..+..++.
T Consensus        47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r~~Le~~~~~~~~~~~~~~~~~~~l~~~L~  126 (343)
T PRK09039         47 EISGKDSALDRLNSQIAELADLLSLERQGNQDLQDSVANLRASLSAAEAERSRLQALLAELAGAGAAAEGRAGELAQELD  126 (343)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcchHHHHHHHHHHHHH
Confidence            44444555555555555556666777778888899999999999988888887777665433334567777777776666


Q ss_pred             HHHHHHHHhH---HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhh
Q 006305          484 TQLALANKSK---QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERAL  541 (651)
Q Consensus       484 ~eL~la~~s~---~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~  541 (651)
                      .+.....+.+   ..+..||..+......|+..|..++........+|..|+.+|+.=.+.
T Consensus       127 ~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~  187 (343)
T PRK09039        127 SEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQ  187 (343)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555544443   455667777777777888888888888888888888888777654433

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=96.17  E-value=5.4  Score=49.67  Aligned_cols=70  Identities=16%  Similarity=0.151  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHh
Q 006305          192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVV  261 (651)
Q Consensus       192 ~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~  261 (651)
                      ..+...++..++.+....-++......+..-..+..--++.=+.|..+.-.-=..+.++++.|..|..++
T Consensus       465 ~e~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~l~~~L  534 (1201)
T PF12128_consen  465 EEEKEQLEQADKRLEQAQEQQNQAQQAVEELQAEEQELRKERDQAEEELRQARRELEELRAQIAELQRQL  534 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3445555555555544444444444433332222222222233333222222256777888888776654

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=96.05  E-value=5.7  Score=48.75  Aligned_cols=222  Identities=25%  Similarity=0.308  Sum_probs=116.0

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhh-------hhHHHhhHHH---HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHh
Q 006305          387 IKAELEVLIHRTAELEEELENMRAE-------KSELEMDLKE---SQRRLET-----SQNQLKEAELKLEELETQLAFAN  451 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaE-------K~ELEmaL~e---~q~~Le~-----s~~~L~EaE~kl~ELQ~qL~~an  451 (651)
                      +.-++++.+..+..+|..|+-+++-       +.+|++.+++   +..+++.     ....+.+....+.+++.++-...
T Consensus       682 ~~~~~~~~q~el~~le~eL~~le~~~~kf~~l~~ql~l~~~~l~l~~~r~~~~e~~~~~~~~~~~~e~v~e~~~~Ike~~  761 (1174)
T KOG0933|consen  682 AQKELRAIQKELEALERELKSLEAQSQKFRDLKQQLELKLHELALLEKRLEQNEFHKLLDDLKELLEEVEESEQQIKEKE  761 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666666666666665444432       2233333332   2222222     22233444455555555554433


Q ss_pred             hhHHHHHHHHH----HHHHhhhhhhhhhhhHHHHHHHHHHHHHHh----------HHHHHHHHHHHHhhHHHHHHHHHHH
Q 006305          452 KSKQAVEVEMK----AAIAARGVAESKLSVVEAEMKTQLALANKS----------KQAAEEEVKSAKSKKEAAESRLRAV  517 (651)
Q Consensus       452 eSk~~~E~el~----a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s----------~~~a~eelk~~~~k~~~lEs~l~~~  517 (651)
                      ..-...+.+..    .|-....+-++++.-|+.||+.--.-+.++          ++...=+...++-...+.++++..+
T Consensus       762 ~~~k~~~~~i~~lE~~~~d~~~~re~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e~l~lE~e~l~~e~~~~k~~l~~~  841 (1174)
T KOG0933|consen  762 RALKKCEDKISTLEKKMKDAKANRERRLKDLEKEIKTAKQRAEESSKELEKRENEYERLQLEHEELEKEISSLKQQLEQL  841 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333332    222234577888888888877443332222          1222222334555577777888888


Q ss_pred             HHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH---HHHHHHHHHhhhcCcchhhh-hhHHHHHHHh
Q 006305          518 EAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI---ELQHEVKLQYLAGSNQELKI-NQEEELAVAA  593 (651)
Q Consensus       518 eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~---~~~~e~~~~~~~~~n~dlKi-KQEkELA~AA  593 (651)
                      +..+..|...+..|++.|.+.-..+....+...+....+.-.-.++   ...++. | .....++.+++ |-|.|+..--
T Consensus       842 ~~~~~~l~~e~~~l~~kv~~~~~~~~~~~~el~~~k~k~~~~dt~i~~~~~~~e~-~-~~e~~~~~l~~kkle~e~~~~~  919 (1174)
T KOG0933|consen  842 EKQISSLKSELGNLEAKVDKVEKDVKKAQAELKDQKAKQRDIDTEISGLLTSQEK-C-LSEKSDGELERKKLEHEVTKLE  919 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHhhhHHHhhhhhHHHH-H-HHHhhcccchHHHHHhHHHHhh
Confidence            8888888888888887777776666666665555555444333222   112222 2 22223444443 3456666666


Q ss_pred             hhhHHHHHHHHHHHHhh
Q 006305          594 SKFAECQKTIASLGRQL  610 (651)
Q Consensus       594 ~KLAECQkTIasLGrQL  610 (651)
                      .--+.|-+-|..|-+--
T Consensus       920 ~e~~~~~k~v~~l~~k~  936 (1174)
T KOG0933|consen  920 SEKANARKEVEKLLKKH  936 (1174)
T ss_pred             hhHHHHHHHHHHHHHhc
Confidence            66678888777765544

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=95.96  E-value=3  Score=50.49  Aligned_cols=58  Identities=26%  Similarity=0.400  Sum_probs=38.5

Q ss_pred             HHHhHHhHHHHHHHHHhhhhHHHhhHH---HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305          394 LIHRTAELEEELENMRAEKSELEMDLK---ESQ---RRLETSQNQLKEAELKLEELETQLAFANKSK  454 (651)
Q Consensus       394 ~~~q~~eLEeKlEKleaEK~ELEmaL~---e~q---~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk  454 (651)
                      +..|+.+|.+|||-+..-+.|-...|.   +..   ++++.-++++++.   .++||.+|-.+....
T Consensus       229 Lr~QvrdLtEkLetlR~kR~EDk~Kl~ElekmkiqleqlqEfkSkim~q---qa~Lqrel~raR~e~  292 (1243)
T KOG0971|consen  229 LRAQVRDLTEKLETLRLKRAEDKAKLKELEKMKIQLEQLQEFKSKIMEQ---QADLQRELKRARKEA  292 (1243)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Confidence            888999999999988877666554444   344   4455555555544   456888876654443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.93  E-value=0.92  Score=52.15  Aligned_cols=155  Identities=25%  Similarity=0.291  Sum_probs=101.5

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQ---------------RRLETSQNQLKEAELKLEELETQLAFANK  452 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q---------------~~Le~s~~~L~EaE~kl~ELQ~qL~~ane  452 (651)
                      +.||-.+..+++.-=+||..|+++=..|+.++...+               ..|-+.+.-+.++....++++.++.-+.+
T Consensus        41 K~El~~LNDRLA~YIekVR~LEaqN~~L~~di~~lr~~~~~~ts~ik~~ye~El~~ar~~l~e~~~~ra~~e~ei~kl~~  120 (546)
T KOG0977|consen   41 KKELQELNDRLAVYIEKVRFLEAQNRKLEHDINLLRGVVGRETSGIKAKYEAELATARKLLDETARERAKLEIEITKLRE  120 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            458888889999999999999999999999888644               33334444444444444444444444333


Q ss_pred             hHHHHHHHHHHH-------HHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 006305          453 SKQAVEVEMKAA-------IAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLR  525 (651)
Q Consensus       453 Sk~~~E~el~a~-------~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~  525 (651)
                      .......++...       .........+++-+++                  ++.-.+..++.+|..+..+..|+..|.
T Consensus       121 e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leA------------------e~~~~krr~~~le~e~~~Lk~en~rl~  182 (546)
T KOG0977|consen  121 ELKELRKKLEKAEKERRGAREKLDDYLSRLSELEA------------------EINTLKRRIKALEDELKRLKAENSRLR  182 (546)
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhh------------------HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            333332222222       1112223333322222                  233344556778888888888888888


Q ss_pred             HHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305          526 SKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (651)
Q Consensus       526 ~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k  560 (651)
                      .-|..+..++++|..+-.++..+|+.|.++|.=+.
T Consensus       183 ~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~  217 (546)
T KOG0977|consen  183 EELARARKQLDDETLLRVDLQNRVQTLLEELAFLK  217 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            88888888888888888888888888888887665

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=95.46  E-value=2.9  Score=49.52  Aligned_cols=101  Identities=21%  Similarity=0.336  Sum_probs=55.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh---HHHHHHHHHHHHHHhHHHHHHHHH----
Q 006305          429 SQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV---VEAEMKTQLALANKSKQAAEEEVK----  501 (651)
Q Consensus       429 s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~---lE~Ei~~eL~la~~s~~~a~eelk----  501 (651)
                      ++..|..+.++-+.||..+..+..+++.=..-+       ..+|+||..   +..+++++|.--.+.+..+++.-.    
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l-------~~LEkrL~eE~~~R~~lEkQL~eErk~r~~ee~~aar~~~  530 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSL-------QQLEKRLAEERRQRASLEKQLQEERKARKEEEEKAARALA  530 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhccc
Confidence            344445555555555555555554443321111       234555433   112455555555444433222111    


Q ss_pred             -----------HHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          502 -----------SAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (651)
Q Consensus       502 -----------~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie  536 (651)
                                 ..+..++.||+.+..+..|++...+.+..||.+++
T Consensus       531 ~~~~~r~e~~e~~r~r~~~lE~E~~~lr~elk~kee~~~~~e~~~~  576 (697)
T PF09726_consen  531 QAQATRQECAESCRQRRRQLESELKKLRRELKQKEEQIRELESELQ  576 (697)
T ss_pred             cchhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                       12355788888888888888888888888888884

; GO: 0016021 integral to membrane

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=95.26  E-value=0.0049  Score=73.22  Aligned_cols=149  Identities=23%  Similarity=0.414  Sum_probs=0.0

Q ss_pred             HHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHH---
Q 006305          406 ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEM---  482 (651)
Q Consensus       406 EKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei---  482 (651)
                      .||+++..+|++.|..++.......-+++-....+.+||.+++.+.-....+..+       ...+++++..|++|+   
T Consensus       549 kKLE~~l~eLe~~ld~~n~~~~e~~k~~kk~q~qlkdlq~~lee~~~~~~~~~~~-------~~~~e~r~~~l~~elee~  621 (859)
T PF01576_consen  549 KKLESDLNELEIQLDHANRANEEAQKQLKKLQAQLKDLQRELEEAQRAREELREQ-------LAVSERRLRALQAELEEL  621 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Confidence            7788889999999988888888888888888888888888888777666544333       334566777777654   


Q ss_pred             HHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305          483 KTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ  561 (651)
Q Consensus       483 ~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~  561 (651)
                      ...+..|...+..|+.++.-+......+-++...+-.+...|..+|..|+.+++.+........-|+++...++.++..
T Consensus       622 ~~~~~~a~r~rk~aE~el~e~~~~~~~l~~~~~~l~~~kr~le~~i~~l~~eleE~~~~~~~~~ek~kka~~~~~~l~~  700 (859)
T PF01576_consen  622 REALEQAERARKQAESELDELQERLNELTSQNSSLSEEKRKLEAEIQQLEEELEEEQSEAEAAEEKAKKAQAQAAQLAE  700 (859)
T ss_dssp             -------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            3557777777777777776666555555555555666666677777778888888888888888888888888777764

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PRK03918 chromosome segregation protein; Provisional

Probab=95.19  E-value=9.1  Score=45.25  Aligned_cols=68  Identities=19%  Similarity=0.184  Sum_probs=32.4

Q ss_pred             HHHHHHHHHHHhhhhhhHHHHHhhhhhh-HHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhh
Q 006305          193 DLCSKLEAAEKQNSALKLELLSLVKELE-LRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVR  262 (651)
Q Consensus       193 ~L~~rLes~EKen~sLkyE~~~l~kELe-IR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~r  262 (651)
                      .+...++.++++...++.++..+++.+. +...-..+.... ... ++-.+.+..+..+..++.+++.+.+
T Consensus       304 ~l~~~~~~l~~~~~~l~~~~~~l~~~l~~~e~~~~~~~e~~-~~~-~~~~~~~~~l~~~~~~l~~~~~~~~  372 (880)
T PRK03918        304 EYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELK-KKL-KELEKRLEELEERHELYEEAKAKKE  372 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3555666666666666666666666554 111111111111 111 3333444455555555555555543

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=95.16  E-value=3.1  Score=40.02  Aligned_cols=133  Identities=22%  Similarity=0.322  Sum_probs=65.5

Q ss_pred             HHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhh
Q 006305          395 IHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESK  474 (651)
Q Consensus       395 ~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~k  474 (651)
                      .........+++.+++....++-.+.....+|.....++.-++..|+.++.+|..++......+              . 
T Consensus         6 k~E~d~a~~r~e~~e~~~K~le~~~~~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~--------------~-   70 (143)
T PF12718_consen    6 KLEADNAQDRAEELEAKVKQLEQENEQKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE--------------K-   70 (143)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH--------------H-
Confidence            3334444445555555555555555555555555555555555555555555443333321110              0 


Q ss_pred             hhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHH
Q 006305          475 LSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKD  554 (651)
Q Consensus       475 l~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEe  554 (651)
                             ........+.-.+..+++|..+..+.+..-.+|..+...+..+-.+|..|+.+.       .....||..|+.
T Consensus        71 -------~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~-------~~~E~k~eel~~  136 (143)
T PF12718_consen   71 -------RKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQER-------DQWEEKYEELEE  136 (143)
T ss_pred             -------HHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhH-------HHHHHHHHHHHH
Confidence                   001122333334555666666666666666666666666666666666666543       334455555554


Q ss_pred             HH
Q 006305          555 EL  556 (651)
Q Consensus       555 eL  556 (651)
                      ++
T Consensus       137 k~  138 (143)
T PF12718_consen  137 KY  138 (143)
T ss_pred             HH
Confidence            43

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=95.13  E-value=8.5  Score=44.60  Aligned_cols=58  Identities=34%  Similarity=0.480  Sum_probs=28.1

Q ss_pred             HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL  447 (651)
Q Consensus       390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL  447 (651)
                      |.+.+......|+..++.|+.+...|+..|...+...+....+.+++......|..+.
T Consensus       151 E~eeL~~~~~~Le~e~~~l~~~v~~l~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~  208 (546)
T PF07888_consen  151 EKEELLKENEQLEEEVEQLREEVERLEAELEQEEEEMEQLKQQQKELTESSEELKEER  208 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444445555555555555555555555555444444444444444444343333

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]

Probab=94.91  E-value=14  Score=45.83  Aligned_cols=228  Identities=18%  Similarity=0.272  Sum_probs=102.6

Q ss_pred             HHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 006305          391 LEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAEL-----KLEELETQLAFANKSKQAVEVEMKAAI  465 (651)
Q Consensus       391 le~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~-----kl~ELQ~qL~~aneSk~~~E~el~a~~  465 (651)
                      ++.+...+...++.+.-|+.+-.+.+.-|... ++++....+++-...     -+.+.++||+.+.+...-++.++-...
T Consensus       223 ~~~~~~~i~~~~e~i~~l~k~i~e~~e~~~~~-~~~e~~~~~l~~Lk~k~~W~~V~~~~~ql~~~~~~i~~~qek~~~l~  301 (1074)
T KOG0250|consen  223 LDHAKELIDLKEEEIKNLKKKIKEEEEKLDNL-EQLEDLKENLEQLKAKMAWAWVNEVERQLNNQEEEIKKKQEKVDTLQ  301 (1074)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555444444444433321 122222222222222     233555666666666555554443333


Q ss_pred             HhhhhhhhhhhhHH---HHHHHHHHHHHHhHHHHHHHHHHHH-------hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305          466 AARGVAESKLSVVE---AEMKTQLALANKSKQAAEEEVKSAK-------SKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (651)
Q Consensus       466 ~~~~~~e~kl~~lE---~Ei~~eL~la~~s~~~a~eelk~~~-------~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei  535 (651)
                      .......+++..+.   .+|++++.-.-..-..-.++|+++.       -.+..++......+..++.++..++.|+..|
T Consensus       302 ~ki~~~~~k~~~~r~k~teiea~i~~~~~e~~~~d~Ei~~~r~~~~~~~re~~~~~~~~~~~~n~i~~~k~~~d~l~k~I  381 (1074)
T KOG0250|consen  302 EKIEEKQGKIEEARQKLTEIEAKIGELKDEVDAQDEEIEEARKDLDDLRREVNDLKEEIREIENSIRKLKKEVDRLEKQI  381 (1074)
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333   2333333332222222222333222       2233455555555555555555555565555


Q ss_pred             HHHHhhc-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhc----CcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhh
Q 006305          536 EKERALS-EENIANFQKSKDELSKVKQEIELQHEVKLQYLAG----SNQELKINQEEELAVAASKFAECQKTIASLGRQL  610 (651)
Q Consensus       536 ekER~~s-~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~----~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQL  610 (651)
                      .+.+..- .+....--+.+.++...+.+++--++. ...+..    .-.+.+..+| +...--++...=+++|..-..+|
T Consensus       382 ~~~~~~~~~~~~~~~~e~e~k~~~L~~evek~e~~-~~~L~~e~~~~~~~~~~~~e-e~~~i~~~i~~l~k~i~~~~~~l  459 (1074)
T KOG0250|consen  382 ADLEKQTNNELGSELEERENKLEQLKKEVEKLEEQ-INSLREELNEVKEKAKEEEE-EKEHIEGEILQLRKKIENISEEL  459 (1074)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence            5554444 444444444444444444433222221 000000    1112223334 45445578888899999999999


Q ss_pred             hhccc-cccccc
Q 006305          611 RSLVT-LDDFLI  621 (651)
Q Consensus       611 KSLa~-ledfl~  621 (651)
                      +.|.. ..|++.
T Consensus       460 ~~lk~~k~dkvs  471 (1074)
T KOG0250|consen  460 KDLKKTKTDKVS  471 (1074)
T ss_pred             HHHHhcccchhh
Confidence            99973 445443

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.86  E-value=2.7  Score=43.99  Aligned_cols=46  Identities=37%  Similarity=0.555  Sum_probs=23.3

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL  433 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L  433 (651)
                      ++|++.+...+..++..++.++-++.-++..+.+.+.++...+..+
T Consensus        37 ~~e~e~~~~~~~~~~~e~e~le~qv~~~e~ei~~~r~r~~~~e~kl   82 (239)
T COG1579          37 KAELEALNKALEALEIELEDLENQVSQLESEIQEIRERIKRAEEKL   82 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455555555555555555555555555555555544444444433

>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins

Probab=94.74  E-value=0.11  Score=60.73  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=30.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305          504 KSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK  537 (651)
Q Consensus       504 ~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek  537 (651)
                      .+.+..|..++..++.|+..|...+..|+.+|++
T Consensus       502 ~e~~~~L~~~~~~Le~e~~~L~~~~~~Le~~l~~  535 (722)
T PF05557_consen  502 SEELNELQKEIEELERENERLRQELEELESELEK  535 (722)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778999999999999999999999999986

The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=94.73  E-value=10  Score=44.06  Aligned_cols=88  Identities=20%  Similarity=0.282  Sum_probs=39.6

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR  468 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~  468 (651)
                      ..++.+.....+|......|+.+...|...+...       +..|.........|+.+......+...+..+........
T Consensus       143 ~qlE~~qkE~eeL~~~~~~Le~e~~~l~~~v~~l-------~~eL~~~~ee~e~L~~~~kel~~~~e~l~~E~~~L~~q~  215 (546)
T PF07888_consen  143 NQLEECQKEKEELLKENEQLEEEVEQLREEVERL-------EAELEQEEEEMEQLKQQQKELTESSEELKEERESLKEQL  215 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444444444444333       344444444444444444444444444444444444444


Q ss_pred             hhhhhhhhhHHHHHH
Q 006305          469 GVAESKLSVVEAEMK  483 (651)
Q Consensus       469 ~~~e~kl~~lE~Ei~  483 (651)
                      .++..+|.-|+.+|.
T Consensus       216 ~e~~~ri~~LEedi~  230 (546)
T PF07888_consen  216 AEARQRIRELEEDIK  230 (546)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            455556666665544

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=94.71  E-value=14  Score=44.97  Aligned_cols=151  Identities=21%  Similarity=0.291  Sum_probs=79.4

Q ss_pred             hhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH
Q 006305          412 KSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANK  491 (651)
Q Consensus       412 K~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~  491 (651)
                      +..++...-+++..+...+.++.+++-.+.+-|.+...+.+..+.+..++-...+.+.+.+.-..+.++-+.+.|..-|.
T Consensus       346 ~~~l~~~~~ear~~~~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~r  425 (980)
T KOG0980|consen  346 KAQLENLKEEARRRIEQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENR  425 (980)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            33344444556666666666666666666666665555555555544444444444444444443333333344444444


Q ss_pred             hHH--HHHHHHHH----HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHH
Q 006305          492 SKQ--AAEEEVKS----AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQE  562 (651)
Q Consensus       492 s~~--~a~eelk~----~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~  562 (651)
                      ++.  ..++++..    +-.||..+--|+...+.-+..+..+...|...|++=..-...+..|++...+.+...++|
T Consensus       426 y~klkek~t~l~~~h~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~E  502 (980)
T KOG0980|consen  426 YEKLKEKYTELRQEHADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQE  502 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            432  33444432    445666666666665555555555555666555554444455555666655555555543

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=94.69  E-value=7.7  Score=45.30  Aligned_cols=210  Identities=25%  Similarity=0.369  Sum_probs=102.8

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH---H---HHHH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV---E---VEMK  462 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~---E---~el~  462 (651)
                      .+...-...+.+|+..|..+..+..+++..+..++..+......+.+.+....+++.++..-......+   +   .+|.
T Consensus       321 ~~~~~~~~el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~  400 (594)
T PF05667_consen  321 DEQEEQEQELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQ  400 (594)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            334444445555555555555555555555555555555555555555555566665544332222211   0   1111


Q ss_pred             HHHHhhhhhhhhhhhHHHHHHHHHHHHHHh---HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305          463 AAIAARGVAESKLSVVEAEMKTQLALANKS---KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER  539 (651)
Q Consensus       463 a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s---~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER  539 (651)
                      .++             ++-..+-..++++-   ..-..++++.+..+...-++.....-.+++.++.++..+..++..=-
T Consensus       401 ~~v-------------~~s~~rl~~L~~qWe~~R~pL~~e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Ke  467 (594)
T PF05667_consen  401 ALV-------------EASEQRLVELAQQWEKHRAPLIEEYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKE  467 (594)
T ss_pred             HHH-------------HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            111             11111112222221   11222333333333334444555556777777778877777776543


Q ss_pred             hhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHHHHHHHhhh-hcccccc
Q 006305          540 ALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLR-SLVTLDD  618 (651)
Q Consensus       540 ~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTIasLGrQLK-SLa~led  618 (651)
                      ..+       ..|..++.++...  ++.-.-+.++--.-+-++ ||..||..--.=-..=||.|-+|+-+|. +.+=.|+
T Consensus       468 e~~-------~qL~~e~e~~~k~--~~Rs~Yt~RIlEIv~NI~-KQk~eI~KIl~DTr~lQkeiN~l~gkL~RtF~v~dE  537 (594)
T PF05667_consen  468 ELY-------KQLVKELEKLPKD--VNRSAYTRRILEIVKNIR-KQKEEIEKILSDTRELQKEINSLTGKLDRTFTVTDE  537 (594)
T ss_pred             HHH-------HHHHHHHHhCCCC--CCHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333       3444444444321  111111222222222222 6777999998888899999999999885 3333344


Q ss_pred             ccc
Q 006305          619 FLI  621 (651)
Q Consensus       619 fl~  621 (651)
                      .|.
T Consensus       538 lif  540 (594)
T PF05667_consen  538 LIF  540 (594)
T ss_pred             HHH
Confidence            433

>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues

Probab=94.69  E-value=2.7  Score=45.42  Aligned_cols=139  Identities=22%  Similarity=0.328  Sum_probs=113.2

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQ----RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA  464 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q----~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~  464 (651)
                      .-++++..++..||+.-..|..|-..|...-....    .=+..+-.+|.+|...++.|+.+|+.-.+....-+.++-..
T Consensus       160 ~~le~Lq~Klk~LEeEN~~LR~Ea~~L~~et~~~EekEqqLv~dcv~QL~~An~qia~LseELa~k~Ee~~rQQEEIt~L  239 (306)
T PF04849_consen  160 IQLEALQEKLKSLEEENEQLRSEASQLKTETDTYEEKEQQLVLDCVKQLSEANQQIASLSEELARKTEENRRQQEEITSL  239 (306)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35788899999999998888888888776555332    22344567899999999999999999888888888888777


Q ss_pred             HHhhhhhhhhhhhHHH---HHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305          465 IAARGVAESKLSVVEA---EMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK  527 (651)
Q Consensus       465 ~~~~~~~e~kl~~lE~---Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K  527 (651)
                      .+...++..|+..+-.   |+...|..+..++.....+|.-+..+|...-.-|.+++.|++.++.|
T Consensus       240 lsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~EaQEElk~lR~~  305 (306)
T PF04849_consen  240 LSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLHEAQEELKTLRKR  305 (306)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            7777788877766443   46677888888888888899999999999999999999999999765

HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].

>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]

Probab=94.66  E-value=4.3  Score=42.52  Aligned_cols=50  Identities=24%  Similarity=0.331  Sum_probs=36.6

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305          499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN  548 (651)
Q Consensus       499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK  548 (651)
                      ++...+....+|+..+..+..++..|..++..|...+..-+....++.+.
T Consensus        97 E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~~~  146 (239)
T COG1579          97 EIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAEAR  146 (239)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455566677888888888888888888888888887777776666554

>PRK04863 mukB cell division protein MukB; Provisional

Probab=94.60  E-value=15  Score=47.22  Aligned_cols=100  Identities=12%  Similarity=0.101  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh--hcCcchhhhhhHH
Q 006305          510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYL--AGSNQELKINQEE  587 (651)
Q Consensus       510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~--~~~n~dlKiKQEk  587 (651)
                      .+..+..++.++..+..++..++.++..=+..-.++......++.++..+...+..-..++.||-  +-+..+++.    
T Consensus       367 ~eeeLeeleeeleeleeEleelEeeLeeLqeqLaelqqel~elQ~el~q~qq~i~~Le~~~~~~~~~~~SdEeLe~----  442 (1486)
T PRK04863        367 QNEVVEEADEQQEENEARAEAAEEEVDELKSQLADYQQALDVQQTRAIQYQQAVQALERAKQLCGLPDLTADNAED----  442 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHH----
Confidence            33333333333333333333333333333333334444444444444444433333334555553  333344432    


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHhhhhc
Q 006305          588 ELAVAASKFAECQKTIASLGRQLRSL  613 (651)
Q Consensus       588 ELA~AA~KLAECQkTIasLGrQLKSL  613 (651)
                      -+..-..++++.+..+..|-.+|..+
T Consensus       443 ~LenF~aklee~e~qL~elE~kL~~l  468 (1486)
T PRK04863        443 WLEEFQAKEQEATEELLSLEQKLSVA  468 (1486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344455555555555555555443

>PF14662 CCDC155: Coiled-coil region of CCDC155

Probab=94.55  E-value=6.2  Score=40.23  Aligned_cols=162  Identities=16%  Similarity=0.224  Sum_probs=113.4

Q ss_pred             hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhh
Q 006305          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEA---ELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAES  473 (651)
Q Consensus       397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~Ea---E~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~  473 (651)
                      ....|.-.++.++-.=+.|--.+...+.++..++..+..+   +..+++|..-+...++.+..+-.+-..++.+...+..
T Consensus        23 en~kL~~~ve~~ee~na~L~~e~~~L~~q~~s~Qqal~~aK~l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~  102 (193)
T PF14662_consen   23 ENAKLQRSVETAEEGNAQLAEEITDLRKQLKSLQQALQKAKALEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVA  102 (193)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555666666666666666667777888888888877776   8888888888888888887777777777777777777


Q ss_pred             hhhhHHHHHH---HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHH
Q 006305          474 KLSVVEAEMK---TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQ  550 (651)
Q Consensus       474 kl~~lE~Ei~---~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~  550 (651)
                      ++.-|.+|-.   .+....++-.....++-..+.-..=..|+=+-..++.+..-...|..|..-|+.=|..-.+...+..
T Consensus       103 ~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~s  182 (193)
T PF14662_consen  103 EIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEKS  182 (193)
T ss_pred             HHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777776633   3333333322222222222222232344444556777888888999999999999999999999999


Q ss_pred             HHHHHHHh
Q 006305          551 KSKDELSK  558 (651)
Q Consensus       551 ~LEeeL~R  558 (651)
                      .||++|+-
T Consensus       183 ~LEeql~q  190 (193)
T PF14662_consen  183 RLEEQLSQ  190 (193)
T ss_pred             HHHHHHHh
Confidence            99999864

>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]

Probab=94.07  E-value=27  Score=45.68  Aligned_cols=184  Identities=22%  Similarity=0.244  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHH------HHHHHHHHH
Q 006305           82 LVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQ------EQRIQETVS  155 (651)
Q Consensus        82 lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEq------Eqki~dav~  155 (651)
                      +=.+|..+.++==.--.-...+...+-.+.+...+++--+.-+|.-+++-|+.|-.+.-+-.++=      -.+|-|...
T Consensus       211 ~~re~s~~~~~L~~~L~~~~~~~~~~q~~~~~l~q~~~eLs~~ie~~~~~ls~~k~t~~s~~~kf~~El~~q~kL~eL~k  290 (1822)
T KOG4674|consen  211 LRREHSIEVEQLEEKLSDLKESLAELQEKNKSLKQQNEELSKKIESLNLELSKLKDTAESSEEKFEKELSTQKKLNELWK  290 (1822)
T ss_pred             HHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555554444445556666777777777778888888888888999999988766543322      245666666


Q ss_pred             HHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhhhhhh--------------------------------------------
Q 006305          156 KQNLEWESKKSELESKLVDLQKKLQTAKSEAAASAD--------------------------------------------  191 (651)
Q Consensus       156 kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~--------------------------------------------  191 (651)
                      .++.+|..--.+|...|.++.+-|.++...++...+                                            
T Consensus       291 s~~ee~~~~~~el~~~i~~~~klled~~~~~~e~~d~l~e~~~sl~~~~~~~~k~~~~le~~l~~an~~~~~~~~~~~~s  370 (1822)
T KOG4674|consen  291 SKLEELSHEVAELQRAIEELEKLLEDASERNKENTDQLKELEQSLSKLNEKLEKKVSRLEGELEDANDSLSATGESSMVS  370 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHhhcccchhh
Confidence            667777666666766676666666555443221000                                            


Q ss_pred             ----------------HHHHHHHHHHHHhhhhhhHHHH--------------HhhhhhhHHHHhhhhhhhHHHHHhHHhH
Q 006305          192 ----------------RDLCSKLEAAEKQNSALKLELL--------------SLVKELELRIVERDLSTKAAETASKQHL  241 (651)
Q Consensus       192 ----------------~~L~~rLes~EKen~sLkyE~~--------------~l~kELeIR~~Ere~s~~aAe~asKQhl  241 (651)
                                      .++......++-++.+++.|+-              .+.=.|+=-..+-+-...+--.-+..|-
T Consensus       371 ~~~a~~s~~~~~~~sLtk~ys~~~~~qqqle~~~lele~~~~~l~s~~eev~~~~p~lk~qr~~~e~~~~~~~~l~~el~  450 (1822)
T KOG4674|consen  371 EKAALASSLIRPGSSLTKLYSKYSKLQQQLESLKLELERLQNILSSFKEEVKQKAPILKEQRSELERMQETKAELSEELD  450 (1822)
T ss_pred             hHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                            0122222333333333333333              3333333333333344445555678899


Q ss_pred             HhHHHHHHHHHHHHHHHHHhhhcC
Q 006305          242 ESIKKLAKVEAECLRLKAVVRKAS  265 (651)
Q Consensus       242 EsvKKiakLEaECqRLr~l~rK~l  265 (651)
                      .++++|.++|++.++|+...+..-
T Consensus       451 ~~~q~~~~~e~~~~~l~~~~~~~~  474 (1822)
T KOG4674|consen  451 FSNQKIQKLEKELESLKKQLNDLE  474 (1822)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999987765433

>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=93.75  E-value=0.018  Score=68.57  Aligned_cols=73  Identities=30%  Similarity=0.391  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHH
Q 006305          101 ENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQ  180 (651)
Q Consensus       101 e~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~  180 (651)
                      .+++..|+..|+....+...++.....|-+=|.+++-|+-.            ..+...++++.+..||..+.+++..|.
T Consensus       411 ~te~~~Lk~~lee~~e~~e~lere~k~L~~El~dl~~q~~~------------~~k~v~eLek~kr~LE~e~~El~~~le  478 (859)
T PF01576_consen  411 ETELFKLKNELEELQEQLEELERENKQLQDELEDLTSQLDD------------AGKSVHELEKAKRRLEQEKEELQEQLE  478 (859)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhccchhhhhh------------hccchHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677777777777777777777777777777776655432            233446788888999999999988888


Q ss_pred             HhhhH
Q 006305          181 TAKSE  185 (651)
Q Consensus       181 ~a~~e  185 (651)
                      ++...
T Consensus       479 E~E~~  483 (859)
T PF01576_consen  479 EAEDA  483 (859)
T ss_dssp             -----
T ss_pred             HHHHH
Confidence            77654

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.

>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []

Probab=93.71  E-value=21  Score=43.15  Aligned_cols=60  Identities=30%  Similarity=0.372  Sum_probs=49.3

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHH
Q 006305          503 AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEI  563 (651)
Q Consensus       503 ~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~  563 (651)
                      +..+..--.+.+..++.++...+.++.-|+.++.+.|.. .++..+++.|+.+..++..+.
T Consensus       505 l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~~~-~e~~~r~~~Le~ev~~~~ee~  564 (775)
T PF10174_consen  505 LASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLRAN-AELRDRIQQLEQEVTRYREES  564 (775)
T ss_pred             HhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-HhhcchHHHHHHHHHHHHHHH
Confidence            333433347888999999999999999999999998877 588999999999998887543

Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.67  E-value=26  Score=44.05  Aligned_cols=56  Identities=18%  Similarity=0.182  Sum_probs=33.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305          505 SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (651)
Q Consensus       505 ~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k  560 (651)
                      +....+|-.+......++..++++.-.+.++..=...+....-++.+|+..|.+..
T Consensus       479 ~e~~~~ekel~~~~~~~n~~~~e~~vaesel~~L~~~~~~~~~~~e~lk~~L~~~~  534 (1293)
T KOG0996|consen  479 EEIEKLEKELMPLLKQVNEARSELDVAESELDILLSRHETGLKKVEELKGKLLASS  534 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33455555555555556666666666666666555556666666666666666644

>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.48  E-value=26  Score=43.48  Aligned_cols=37  Identities=27%  Similarity=0.368  Sum_probs=20.1

Q ss_pred             hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHH
Q 006305          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL  433 (651)
Q Consensus       397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L  433 (651)
                      .+..+.+.++.++.+.-+.++.+..|++.+.+.....
T Consensus       742 ~~~~~~e~v~e~~~~Ike~~~~~k~~~~~i~~lE~~~  778 (1174)
T KOG0933|consen  742 DLKELLEEVEESEQQIKEKERALKKCEDKISTLEKKM  778 (1174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444556666666666666666666554444333

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=93.48  E-value=7.1  Score=45.22  Aligned_cols=208  Identities=24%  Similarity=0.379  Sum_probs=132.7

Q ss_pred             cchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-HHHHHHH
Q 006305          385 SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA-VEVEMKA  463 (651)
Q Consensus       385 ~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~-~E~el~a  463 (651)
                      +.+.+|+.-+..+...+++++..|+.|-.-|.-.|..++.+++.-..-..+.+++.-.|-.+|+...-.... |.....-
T Consensus       151 ~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~  230 (546)
T KOG0977|consen  151 SELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRK  230 (546)
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            456788889999999999999999999999999999998888877777777777777777777665433221 1111111


Q ss_pred             HHHh-----hhhhhhhhhhHHHHHHHH-------------------HHHHH-------HhHHHHHHHHHHHHhhHHHHHH
Q 006305          464 AIAA-----RGVAESKLSVVEAEMKTQ-------------------LALAN-------KSKQAAEEEVKSAKSKKEAAES  512 (651)
Q Consensus       464 ~~~~-----~~~~e~kl~~lE~Ei~~e-------------------L~la~-------~s~~~a~eelk~~~~k~~~lEs  512 (651)
                      ...+     +.+-..+|-..=.||..+                   +.-++       -..-.+.|+++.+....-.|-+
T Consensus       231 ~~rd~t~~~r~~F~~eL~~Ai~eiRaqye~~~~~nR~diE~~Y~~kI~~i~~~~~~~~~~~~~~rEEl~~~R~~i~~Lr~  310 (546)
T KOG0977|consen  231 ARRDTTADNREYFKNELALAIREIRAQYEAISRQNRKDIESWYKRKIQEIRTSAERANVEQNYAREELRRIRSRISGLRA  310 (546)
T ss_pred             HhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHhcccchhh
Confidence            1100     112233332222233221                   22222       2234677899999888888889


Q ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHH
Q 006305          513 RLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVA  592 (651)
Q Consensus       513 ~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~A  592 (651)
                      ++..+|.-..-|...|..|+.++..++..++..+.   +.+.+|.++..+.+- +-..+..+.    |+|+.=+.||+.=
T Consensus       311 klselE~~n~~L~~~I~dL~~ql~e~~r~~e~~L~---~kd~~i~~mReec~~-l~~Elq~Ll----D~ki~Ld~EI~~Y  382 (546)
T KOG0977|consen  311 KLSELESRNSALEKRIEDLEYQLDEDQRSFEQALN---DKDAEIAKMREECQQ-LSVELQKLL----DTKISLDAEIAAY  382 (546)
T ss_pred             hhccccccChhHHHHHHHHHhhhhhhhhhhhhhhh---hHHHHHHHHHHHHHH-HHHHHHHhh----chHhHHHhHHHHH
Confidence            99999999999999999999999999999876654   455566666543211 111122222    4455556677643


Q ss_pred             hhhhHHHHH
Q 006305          593 ASKFAECQK  601 (651)
Q Consensus       593 A~KLAECQk  601 (651)
                       -||=|=.+
T Consensus       383 -RkLLegee  390 (546)
T KOG0977|consen  383 -RKLLEGEE  390 (546)
T ss_pred             -HHHhcccc
Confidence             55555444

>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.27  E-value=4.4  Score=48.51  Aligned_cols=151  Identities=16%  Similarity=0.268  Sum_probs=104.6

Q ss_pred             ccchHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305          384 ESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA  463 (651)
Q Consensus       384 ~~sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a  463 (651)
                      ...+..|++++..++-.|..||--+...+-.-..++...+.+.+...+......+.+-|+|..|--.--.++..+.++.+
T Consensus       439 ~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~Ekq~l~~qlkq  518 (1118)
T KOG1029|consen  439 KKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAPEKQELNHQLKQ  518 (1118)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            34578999999999999999999999998888888888888888888888888888888887766666666666666666


Q ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcH
Q 006305          464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSE  543 (651)
Q Consensus       464 ~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~  543 (651)
                      +......--.+++.|+        .|-.-++++          +..|+-++..++.|.++-.+.|+.+...+.+=|.-+-
T Consensus       519 ~q~a~~~~~~~~s~L~--------aa~~~ke~i----------rq~ikdqldelskE~esk~~eidi~n~qlkelk~~~~  580 (1118)
T KOG1029|consen  519 KQSAHKETTQRKSELE--------AARRKKELI----------RQAIKDQLDELSKETESKLNEIDIFNNQLKELKEDVN  580 (1118)
T ss_pred             hhhhccCcchHHHHHH--------HHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            6544433333332222        222222222          3345666777777777777777777777776666665


Q ss_pred             HHHHHHHHH
Q 006305          544 ENIANFQKS  552 (651)
Q Consensus       544 E~~aKc~~L  552 (651)
                      --..+|++|
T Consensus       581 ~q~lake~~  589 (1118)
T KOG1029|consen  581 SQQLAKEEL  589 (1118)
T ss_pred             HHHHHHHHH
Confidence            555666554

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.79  E-value=34  Score=43.02  Aligned_cols=162  Identities=21%  Similarity=0.312  Sum_probs=81.7

Q ss_pred             HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH---HHHhhhhhhhh
Q 006305          398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA---AIAARGVAESK  474 (651)
Q Consensus       398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a---~~~~~~~~e~k  474 (651)
                      +..++..+.++.-..+.+.-.++.++.+....+.+..+++..+..+++....+-.--..++.++.+   ++.....=..+
T Consensus       780 v~~le~~l~~~~~~~~~~~~~~~~~ee~~~~lr~~~~~l~~~l~~~~~~~k~~~~~~~~l~~~i~~~E~~~~k~~~d~~~  859 (1293)
T KOG0996|consen  780 VEKLERALSKMSDKARQHQEQLHELEERVRKLRERIPELENRLEKLTASVKRLAELIEYLESQIAELEAAVLKKVVDKKR  859 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCcHHH
Confidence            445555555555555556666666666666666666677776666666654444333333333322   22222222333


Q ss_pred             hhhHH---HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHhhhHHHHHHHHhh---cHHHHH
Q 006305          475 LSVVE---AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR-LRAVEAEMETLRSKVISLEDEVEKERAL---SEENIA  547 (651)
Q Consensus       475 l~~lE---~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~-l~~~eaE~~~L~~Ki~~Le~EiekER~~---s~E~~a  547 (651)
                      +..++   +++++++.-+++...- .++|+....++..+=.. ++.-..+++.+..+++-|+.+|.+.-+.   +.-+.+
T Consensus       860 l~~~~~~ie~l~kE~e~~qe~~~K-k~~i~~lq~~i~~i~~e~~q~qk~kv~~~~~~~~~l~~~i~k~~~~i~~s~~~i~  938 (1293)
T KOG0996|consen  860 LKELEEQIEELKKEVEELQEKAAK-KARIKELQNKIDEIGGEKVQAQKDKVEKINEQLDKLEADIAKLTVAIKTSDRNIA  938 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHhhchhhHHhHHHHHHHHHHHHHHHHHHHHhHHHHhcCcccHH
Confidence            33333   3577777777633221 25555444443333221 2233445555555555555555555433   344555


Q ss_pred             HHHHHHHHHHhhH
Q 006305          548 NFQKSKDELSKVK  560 (651)
Q Consensus       548 Kc~~LEeeL~R~k  560 (651)
                      ||++.-.++.|+.
T Consensus       939 k~q~~l~~le~~~  951 (1293)
T KOG0996|consen  939 KAQKKLSELEREI  951 (1293)
T ss_pred             HHHHHHHHHHHHH
Confidence            5555555555444

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=92.24  E-value=34  Score=41.69  Aligned_cols=65  Identities=15%  Similarity=0.226  Sum_probs=41.2

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN  451 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an  451 (651)
                      |+.+|-.+..++.-|-.|+..|+-..+.+.|+....+..+++-+--++-.-...+++|.|.++..
T Consensus       335 irc~LlEarrk~egfddk~~eLEKkrd~al~dvr~i~e~k~nve~elqsL~~l~aerqeQidelK  399 (1265)
T KOG0976|consen  335 IRCALLEARRKAEGFDDKLNELEKKRDMALMDVRSIQEKKENVEEELQSLLELQAERQEQIDELK  399 (1265)
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555666667777777777777777777777666666666666666666666543

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.67  E-value=41  Score=41.46  Aligned_cols=78  Identities=26%  Similarity=0.303  Sum_probs=43.0

Q ss_pred             HHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHHHH---
Q 006305          527 KVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTI---  603 (651)
Q Consensus       527 Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQkTI---  603 (651)
                      ||..||++|.+        +.-.+++-|||....++.++.==.   -+...++-.|+=+ +.+.+|-+-+++-+-||   
T Consensus       463 kVklLeetv~d--------lEalee~~EQL~Esn~ele~DLre---Eld~~~g~~kel~-~r~~aaqet~yDrdqTI~Kf  530 (1243)
T KOG0971|consen  463 KVKLLEETVGD--------LEALEEMNEQLQESNRELELDLRE---ELDMAKGARKELQ-KRVEAAQETVYDRDQTIKKF  530 (1243)
T ss_pred             HHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHhhHHHHHH-HHHHHHHHHHHhHHHHHHHH
Confidence            66667766643        233455555555544432221000   1222333333322 46667778888888888   


Q ss_pred             ----HHHHHhhhhcccc
Q 006305          604 ----ASLGRQLRSLVTL  616 (651)
Q Consensus       604 ----asLGrQLKSLa~l  616 (651)
                          +.|.-||+-+++.
T Consensus       531 Relva~Lqdqlqe~~dq  547 (1243)
T KOG0971|consen  531 RELVAHLQDQLQELTDQ  547 (1243)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence                5678888888773

>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]

Probab=90.91  E-value=47  Score=40.73  Aligned_cols=132  Identities=24%  Similarity=0.264  Sum_probs=63.0

Q ss_pred             HHHHhhhhHHHhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHH--
Q 006305          406 ENMRAEKSELEMDLKESQRRLETSQN---QLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEA--  480 (651)
Q Consensus       406 EKleaEK~ELEmaL~e~q~~Le~s~~---~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~--  480 (651)
                      +..+.--..++|+|...+...+.-+.   +|+.-...+.--|.|++.++.....++.+-.+.++.-..+-.++.-|..  
T Consensus       361 ~q~~~ql~~le~~~~e~q~~~qe~~~e~eqLr~elaql~a~r~q~eka~~~~ee~e~~~l~~e~ry~klkek~t~l~~~h  440 (980)
T KOG0980|consen  361 EQYENQLLALEGELQEQQREAQENREEQEQLRNELAQLLASRTQLEKAQVLVEEAENKALAAENRYEKLKEKYTELRQEH  440 (980)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555566666654433332211   2222222222233343344433333333333333333333333333332  


Q ss_pred             --------HHHHHHHHHHHhHHHHHHHHHH--------------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305          481 --------EMKTQLALANKSKQAAEEEVKS--------------AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK  537 (651)
Q Consensus       481 --------Ei~~eL~la~~s~~~a~eelk~--------------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek  537 (651)
                              .|.++|..+..+....++++..              ...|+++....+..++.|...|..++..|+..+.-
T Consensus       441 ~~lL~K~~di~kQle~~~~s~~~~~~~~~~L~d~le~~~~~~~~~~~K~e~~~~~le~l~~El~~l~~e~~~lq~~~~~  519 (980)
T KOG0980|consen  441 ADLLRKYDDIQKQLESAEQSIDDVEEENTNLNDQLEELQRAAGRAETKTESQAKALESLRQELALLLIELEELQRTLSN  519 (980)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence                    3667788877776544444332              23456666666666666666666666666665443

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=89.87  E-value=20  Score=34.84  Aligned_cols=89  Identities=22%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHh-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEM-------DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM  461 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEm-------aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el  461 (651)
                      .+|..+.+..+.|+.+++.|+++....+.       +.-.++..+++.+.++.++-..+-.|..+|+.+...|..+.-.+
T Consensus        10 ~kLK~~~~e~dsle~~v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~l   89 (140)
T PF10473_consen   10 EKLKESESEKDSLEDHVESLERELEMSQENKECLILDAENSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKEL   89 (140)
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35555555566666666555555444444       44456677777777777777777777777777777777666666


Q ss_pred             HHHHHhhhhhhhhhhh
Q 006305          462 KAAIAARGVAESKLSV  477 (651)
Q Consensus       462 ~a~~~~~~~~e~kl~~  477 (651)
                      ..+.....++++..+.
T Consensus        90 q~~q~kv~eLE~~~~~  105 (140)
T PF10473_consen   90 QKKQEKVSELESLNSS  105 (140)
T ss_pred             HHHHHHHHHHHHHhHH
Confidence            6665555555555543

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease

Probab=89.70  E-value=25  Score=35.64  Aligned_cols=105  Identities=24%  Similarity=0.348  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH---HHHHh-----hhhhhhhhhhHHHH----------HHH
Q 006305          423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMK---AAIAA-----RGVAESKLSVVEAE----------MKT  484 (651)
Q Consensus       423 q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~---a~~~~-----~~~~e~kl~~lE~E----------i~~  484 (651)
                      ++.+.+.+.+|+......-.+...+...+.-......++.   ..+..     +.++..+|..++.+          +.+
T Consensus        67 ~eEvr~Lr~~LR~~q~~~r~~~~klk~~~~el~k~~~~l~~L~~L~~dknL~eReeL~~kL~~~~~~l~~~~~ki~~Lek  146 (194)
T PF15619_consen   67 NEEVRVLRERLRKSQEQERELERKLKDKDEELLKTKDELKHLKKLSEDKNLAEREELQRKLSQLEQKLQEKEKKIQELEK  146 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444443333333333333332   22221     34566666666554          335


Q ss_pred             HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305          485 QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVIS  530 (651)
Q Consensus       485 eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~  530 (651)
                      .+.+++++..   -+|..-+.|...+...+..++.||..|..||..
T Consensus       147 ~leL~~k~~~---rql~~e~kK~~~~~~~~~~l~~ei~~L~~klkE  189 (194)
T PF15619_consen  147 QLELENKSFR---RQLASEKKKHKEAQEEVKSLQEEIQRLNQKLKE  189 (194)
T ss_pred             HHHHHhhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666654   244445555666666667777777777766643

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=89.45  E-value=25  Score=35.57  Aligned_cols=123  Identities=24%  Similarity=0.321  Sum_probs=91.4

Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh
Q 006305           81 DLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLE  160 (651)
Q Consensus        81 ~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmrQLr~~rEEqEqki~dav~kks~e  160 (651)
                      +|++.|.+.              ...+|.=-.+.|.-|+.       |=..||+=|-++|.--+..+..++++.... +.
T Consensus         2 ~L~~~He~a--------------f~~iK~YYndIT~~NL~-------lIksLKeei~emkk~e~~~~k~m~ei~~eN-~~   59 (201)
T PF13851_consen    2 ELMKNHEKA--------------FQEIKNYYNDITLNNLE-------LIKSLKEEIAEMKKKEERNEKLMAEISQEN-KR   59 (201)
T ss_pred             hHHHHHHHH--------------HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence            578888776              67788899999999998       678899999999997777777777776654 33


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhh
Q 006305          161 WESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERD  227 (651)
Q Consensus       161 ~e~~~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere  227 (651)
                      +-.--..++..+.+|++.|..-.....+  -..+..|+..++++...|+.|-.+|.--+.---.||+
T Consensus        60 L~epL~~a~~e~~eL~k~L~~y~kdK~~--L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~Erd  124 (201)
T PF13851_consen   60 LSEPLKKAEEEVEELRKQLKNYEKDKQS--LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERD  124 (201)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333345567777777777755443322  2367888999999999999999998877776666665

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=89.38  E-value=46  Score=38.21  Aligned_cols=61  Identities=25%  Similarity=0.267  Sum_probs=45.4

Q ss_pred             HHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHHHHhh
Q 006305          202 EKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVR  262 (651)
Q Consensus       202 EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr~l~r  262 (651)
                      =.+..+-|.||..+..|+..=..+++-...=|+-|..-=-...+++.-|-.|..+|+..+-
T Consensus       129 ~~eL~~~k~EL~~lr~e~~~~~~~k~~A~~~aeea~~~a~~~~~kve~L~~Ei~~lke~l~  189 (522)
T PF05701_consen  129 VAELDSVKQELEKLRQELASALDAKNAALKQAEEAVSAAEENEEKVEELSKEIIALKESLE  189 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555666666666666667778888777777777777778899999999999987754

Several sequences in this family are described as being myosin heavy chain-like.

>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion

Probab=88.27  E-value=26  Score=34.07  Aligned_cols=54  Identities=17%  Similarity=0.361  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 006305          506 KKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV  559 (651)
Q Consensus       506 k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~  559 (651)
                      +..+++.....+..++..+..++.-++.+++..+..-......++.|++.+...
T Consensus       131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  184 (191)
T PF04156_consen  131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQEL  184 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444443333333333333333333344444444444433

The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=87.97  E-value=26  Score=37.66  Aligned_cols=38  Identities=21%  Similarity=0.347  Sum_probs=18.3

Q ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          499 EVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (651)
Q Consensus       499 elk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie  536 (651)
                      +|...+.....++.++..++.++..+..++..+..+|.
T Consensus       224 ~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~  261 (325)
T PF08317_consen  224 EIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIA  261 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33334444444555555555555555555555444443

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=87.95  E-value=37  Score=35.40  Aligned_cols=79  Identities=22%  Similarity=0.312  Sum_probs=39.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA  466 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~  466 (651)
                      ..++..+..++..+-..--+++.+...+..++...+.+++........++..+..|...++.+.-....++.++.....
T Consensus        53 e~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~~L~e  131 (312)
T PF00038_consen   53 EEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQSLKE  131 (312)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHHHHHH
Confidence            3344444444444444444444444444444444555555555555555555556665655555555555554444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=87.33  E-value=54  Score=40.78  Aligned_cols=26  Identities=42%  Similarity=0.502  Sum_probs=13.9

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSE  414 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~E  414 (651)
                      .+.+.+-+++.+|+.++.-|..||.-
T Consensus       265 d~~~~~~~~i~ele~~l~~l~~ekeq  290 (1200)
T KOG0964|consen  265 DESEDLKCEIKELENKLTNLREEKEQ  290 (1200)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence            45555555666666666555444433

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=87.30  E-value=3.3  Score=41.05  Aligned_cols=33  Identities=21%  Similarity=0.333  Sum_probs=20.6

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305          494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRS  526 (651)
Q Consensus       494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~  526 (651)
                      +....++-.++--+..+|.++..++.|...|..
T Consensus       147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~  179 (194)
T PF08614_consen  147 EILQDELQALQLQLNMLEEKLRKLEEENRELVE  179 (194)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444455555556677777777777777754

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=87.19  E-value=71  Score=37.85  Aligned_cols=115  Identities=26%  Similarity=0.303  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH------HHHHH-----hhhhhhhhhhhHHHHHH---HHHH
Q 006305          422 SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM------KAAIA-----ARGVAESKLSVVEAEMK---TQLA  487 (651)
Q Consensus       422 ~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el------~a~~~-----~~~~~e~kl~~lE~Ei~---~eL~  487 (651)
                      .+++......++.+++.++-.||+-+.....+--..+..+      ++.++     +..++-.++-+||.|+.   .+|.
T Consensus       187 L~~~~~~~~~q~~~le~ki~~lq~a~~~t~~el~~~~s~~dee~~~k~aev~lim~eLe~aq~ri~~lE~e~e~L~~ql~  266 (629)
T KOG0963|consen  187 LKDEEQNLQEQLEELEKKISSLQSAIEDTQNELFDLKSKYDEEVAAKAAEVSLIMTELEDAQQRIVFLEREVEQLREQLA  266 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666677777777777777766655444443333321      22222     23456667777776644   6677


Q ss_pred             HHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhc
Q 006305          488 LANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALS  542 (651)
Q Consensus       488 la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s  542 (651)
                      .||.+...+  .+    ....++.+.|..++.+|..|..-|..++.-+.+||.-|
T Consensus       267 ~~N~~~~~~--~~----~~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~~  315 (629)
T KOG0963|consen  267 KANSSKKLA--KI----DDIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREKH  315 (629)
T ss_pred             hhhhhhhhc--cC----CchHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            788776653  00    11223334444455555555555555555555555444

>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5

Probab=86.66  E-value=76  Score=37.60  Aligned_cols=54  Identities=13%  Similarity=0.281  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305          507 KEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (651)
Q Consensus       507 ~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k  560 (651)
                      .+.|.-||.+++.=+-.|++.=-.|...+.-|...--+...||.+|+++|-..+
T Consensus       162 N~eLK~QL~Elq~~Fv~ltne~~elt~~lq~Eq~~~keL~~kl~~l~~~l~~~~  215 (617)
T PF15070_consen  162 NRELKEQLAELQDAFVKLTNENMELTSALQSEQHVKKELQKKLGELQEKLHNLK  215 (617)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555555554434444455555555555555555555554444

>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]

Probab=86.64  E-value=73  Score=37.44  Aligned_cols=95  Identities=23%  Similarity=0.339  Sum_probs=62.0

Q ss_pred             hHHHHHHHHHhHHhHHHHH----------HHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305          387 IKAELEVLIHRTAELEEEL----------ENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA  456 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKl----------EKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~  456 (651)
                      +.-+++.+.....+|++++          +-++..++.|+-++.+.+.-.....+.-..++.+|+.|+.++.......+.
T Consensus       233 i~~~ie~l~~~n~~l~e~i~e~ek~~~~~eslre~~~~L~~D~nK~~~y~~~~~~k~~~~~~~l~~l~~Eie~kEeE~e~  312 (581)
T KOG0995|consen  233 IANEIEDLKKTNRELEEMINEREKDPGKEESLREKKARLQDDVNKFQAYVSQMKSKKQHMEKKLEMLKSEIEEKEEEIEK  312 (581)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666666777777766          445556666777887777777777777778888888888888776666655


Q ss_pred             HHH-----------------HHHHHHHhhhhhhhhhhhHHHH
Q 006305          457 VEV-----------------EMKAAIAARGVAESKLSVVEAE  481 (651)
Q Consensus       457 ~E~-----------------el~a~~~~~~~~e~kl~~lE~E  481 (651)
                      +..                 +.+.|..+++.+.+.|.-+..+
T Consensus       313 lq~~~d~Lk~~Ie~Q~iS~~dve~mn~Er~~l~r~l~~i~~~  354 (581)
T KOG0995|consen  313 LQKENDELKKQIELQGISGEDVERMNLERNKLKRELNKIQSE  354 (581)
T ss_pred             HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            522                 2244555555666666554443

>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]

Probab=86.51  E-value=36  Score=40.15  Aligned_cols=101  Identities=27%  Similarity=0.286  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHH
Q 006305          423 QRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS  502 (651)
Q Consensus       423 q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~  502 (651)
                      -..++..+.++..++...+.|..|+..+|.+.......      ...-+...||+.+.+|.....-.........+++..
T Consensus       241 m~eLe~aq~ri~~lE~e~e~L~~ql~~~N~~~~~~~~~------~i~~~~~~L~~kd~~i~~L~~di~~~~~S~~~e~e~  314 (629)
T KOG0963|consen  241 MTELEDAQQRIVFLEREVEQLREQLAKANSSKKLAKID------DIDALGSVLNQKDSEIAQLSNDIERLEASLVEEREK  314 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccCC------chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            36678888899999999999999999999888654111      122355667777777765544444444444445555


Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 006305          503 AKSKKEAAESRLRAVEAEMETLRSKVI  529 (651)
Q Consensus       503 ~~~k~~~lEs~l~~~eaE~~~L~~Ki~  529 (651)
                      .++-...||.++...-.+++.|..|..
T Consensus       315 ~~~qI~~le~~l~~~~~~leel~~kL~  341 (629)
T KOG0963|consen  315 HKAQISALEKELKAKISELEELKEKLN  341 (629)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            556667777777777777777766543

>smart00787 Spc7 Spc7 kinetochore protein

Probab=86.04  E-value=38  Score=36.68  Aligned_cols=110  Identities=21%  Similarity=0.241  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHH
Q 006305          400 ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVE  479 (651)
Q Consensus       400 eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE  479 (651)
                      .|...++-|+.++..|...+...+.-+..++.........+..|+..-+..+.--                         
T Consensus       148 ~L~~~~~~l~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d-------------------------  202 (312)
T smart00787      148 GLDENLEGLKEDYKLLMKELELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCD-------------------------  202 (312)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCC-------------------------
Confidence            3444556666666666666655555555555555444444444444311111100                         


Q ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 006305          480 AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEK  537 (651)
Q Consensus       480 ~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eiek  537 (651)
                         ..+|..+...-.....+|..+..+...++.++..+...|+....++..+..+|..
T Consensus       203 ---~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~  257 (312)
T smart00787      203 ---PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAE  257 (312)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               0123333322223333444445555556666666666666666666665555554

This domain is found in cell division proteins which are required for kinetochore-spindle association.

>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT)

Probab=85.52  E-value=32  Score=32.31  Aligned_cols=39  Identities=26%  Similarity=0.397  Sum_probs=15.6

Q ss_pred             HHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHH
Q 006305          389 AELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLE  427 (651)
Q Consensus       389 ~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le  427 (651)
                      .++..+..++...+.++..+..+-.....-...|+.+|+
T Consensus        10 ~e~~~~~~~~~~~~~~~~~~~~dl~~q~~~a~~Aq~~YE   48 (132)
T PF07926_consen   10 SELQRLKEQEEDAEEQLQSLREDLESQAKIAQEAQQKYE   48 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333344444444444444444443333333334444433

These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.12  E-value=46  Score=33.74  Aligned_cols=133  Identities=28%  Similarity=0.307  Sum_probs=81.1

Q ss_pred             HhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhH
Q 006305          399 AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVV  478 (651)
Q Consensus       399 ~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~l  478 (651)
                      ..|.+++..|+.--...+..+.+...+......-|..++..+++|+.+|..-..-+..                      
T Consensus        30 ksLKeei~emkk~e~~~~k~m~ei~~eN~~L~epL~~a~~e~~eL~k~L~~y~kdK~~----------------------   87 (201)
T PF13851_consen   30 KSLKEEIAEMKKKEERNEKLMAEISQENKRLSEPLKKAEEEVEELRKQLKNYEKDKQS----------------------   87 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------
Confidence            3444455555544445555666666677777777778888888888887765555532                      


Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHH-HHHHHHHHHHHHH
Q 006305          479 EAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEE-NIANFQKSKDELS  557 (651)
Q Consensus       479 E~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E-~~aKc~~LEeeL~  557 (651)
                             |..+..-....+.+|+.+.-.++.|+.++..++.|-..|..++...=.+|.+-=.+-.- ...|...|.+.|.
T Consensus        88 -------L~~~k~rl~~~ek~l~~Lk~e~evL~qr~~kle~ErdeL~~kf~~~i~evqQk~~~kn~lLEkKl~~l~~~lE  160 (201)
T PF13851_consen   88 -------LQNLKARLKELEKELKDLKWEHEVLEQRFEKLEQERDELYRKFESAIQEVQQKTGLKNLLLEKKLQALSEQLE  160 (201)
T ss_pred             -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   22333333344556666666777788888888888888888777776666653222111 1234555555555


Q ss_pred             hhH
Q 006305          558 KVK  560 (651)
Q Consensus       558 R~k  560 (651)
                      ...
T Consensus       161 ~ke  163 (201)
T PF13851_consen  161 KKE  163 (201)
T ss_pred             HHH
Confidence            544

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=84.19  E-value=69  Score=34.97  Aligned_cols=189  Identities=20%  Similarity=0.299  Sum_probs=126.2

Q ss_pred             hhhhhhHhhHhHHHHHHHhhc----chhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhH
Q 006305           56 EVVNDSVKTLTEKLSAALLNV----SAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGA  131 (651)
Q Consensus        56 e~~~~~vk~LneKLs~al~~~----~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~A  131 (651)
                      +-++..|.+.--+|++|+.+.    ++|-|+----...-.|=+.=++|.--++..|+..-+-..++-+.++-.+.-|..-
T Consensus        87 erLEtEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~nsLe~e  166 (305)
T PF14915_consen   87 ERLETEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKFNSLEIE  166 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            347789999999999999985    3444443333333345555667888888777776666666666666555544332


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHH---HHHHHHHHHHHHHhhhHhh--hhhhHHHHHHHHHHHHhhh
Q 006305          132 LKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSEL---ESKLVDLQKKLQTAKSEAA--ASADRDLCSKLEAAEKQNS  206 (651)
Q Consensus       132 LKECmrQLr~~rEEqEqki~dav~kks~e~e~~~~el---E~kl~e~~~~L~~a~~e~~--a~~~~~L~~rLes~EKen~  206 (651)
                      |               ....|++..||--+|..+-+|   +-++-|+.+..........  ..-...+..||--++-+|+
T Consensus       167 l---------------h~trdaLrEKtL~lE~~QrdL~Qtq~q~KE~e~m~qne~~kv~k~~~Kqes~eERL~QlqsEN~  231 (305)
T PF14915_consen  167 L---------------HHTRDALREKTLALESVQRDLSQTQCQIKEIEHMYQNEQDKVNKYIGKQESLEERLSQLQSENM  231 (305)
T ss_pred             H---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2               345567777777777777665   5566666555543322211  1223578899999999999


Q ss_pred             hhhHHHHHhhhhhhHHH-HhhhhhhhHHHHHhHHhHHhHHHHHHHH-------HHHHHHHH
Q 006305          207 ALKLELLSLVKELELRI-VERDLSTKAAETASKQHLESIKKLAKVE-------AECLRLKA  259 (651)
Q Consensus       207 sLkyE~~~l~kELeIR~-~Ere~s~~aAe~asKQhlEsvKKiakLE-------aECqRLr~  259 (651)
                      -|+-.|--..+.-.+.- .--+.-.+-.|+..+-|.++-|.+--||       .||..||-
T Consensus       232 LLrQQLddA~~K~~~kek~ViniQ~~f~d~~~~L~ae~ekq~lllEErNKeL~ne~n~LkE  292 (305)
T PF14915_consen  232 LLRQQLDDAHNKADNKEKTVINIQDQFQDIVKKLQAESEKQVLLLEERNKELINECNHLKE  292 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            99999988777766544 4556666778899999999988776554       57777764

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=83.73  E-value=58  Score=33.72  Aligned_cols=55  Identities=29%  Similarity=0.462  Sum_probs=32.9

Q ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 006305          497 EEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK  558 (651)
Q Consensus       497 ~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R  558 (651)
                      +++|+-++.|.+..|.+...++.=|..|..-|+-|+..+...+       .||..+...|.+
T Consensus       143 e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k-------~ky~~~~~eLD~  197 (205)
T KOG1003|consen  143 EEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAK-------EKYEEAKKELDE  197 (205)
T ss_pred             HHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHH-------HHHHHHHHHHHH
Confidence            3455666666666676666666666666666666666655443       345555555444

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=83.39  E-value=47  Score=32.41  Aligned_cols=66  Identities=23%  Similarity=0.295  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305          495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVK  560 (651)
Q Consensus       495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k  560 (651)
                      -+..+|.++.+....+-+.+..++.|+..++..-..|..++++.+.-=.+....+..+..-|+...
T Consensus        49 n~k~eie~L~~el~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q~kv~eLE~~~~~~~~~l~~~E  114 (140)
T PF10473_consen   49 NSKAEIETLEEELEELTSELNQLELELDTLRSEKENLDKELQKKQEKVSELESLNSSLENLLQEKE  114 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            333455556666666666666777777777777777777777766666666666666666666554

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=83.29  E-value=1.5e+02  Score=38.01  Aligned_cols=41  Identities=22%  Similarity=0.329  Sum_probs=21.6

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          418 DLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE  458 (651)
Q Consensus       418 aL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E  458 (651)
                      .+.+...++.....+.+.++..+-.++.+|..+......+.
T Consensus       495 ~~ke~~ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~  535 (1317)
T KOG0612|consen  495 EQKEVEEKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAA  535 (1317)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344445555555555555555556666655555554443

>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]

Probab=82.89  E-value=62  Score=33.49  Aligned_cols=29  Identities=31%  Similarity=0.377  Sum_probs=17.2

Q ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHh
Q 006305          501 KSAKSKKEAAESRLRAVEAEMETLRSKVI  529 (651)
Q Consensus       501 k~~~~k~~~lEs~l~~~eaE~~~L~~Ki~  529 (651)
                      +++..+-.-++.++...+.+++.+..|+.
T Consensus       126 k~l~~~ee~~~q~~d~~e~~ik~ltdKLk  154 (205)
T KOG1003|consen  126 KSLSAKEEKLEQKEEKYEEELKELTDKLK  154 (205)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            34444444556666667777777776554

>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain

Probab=82.84  E-value=79  Score=34.64  Aligned_cols=119  Identities=19%  Similarity=0.283  Sum_probs=73.7

Q ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH----HHHHHHHHHHhHHHHHHHHHH-----------H---
Q 006305          442 ELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE----MKTQLALANKSKQAAEEEVKS-----------A---  503 (651)
Q Consensus       442 ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E----i~~eL~la~~s~~~a~eelk~-----------~---  503 (651)
                      .|+.++..+..........+..+..+++++|..|+.=++-    +.++..--+.-+...+..|..           .   
T Consensus       139 kL~k~i~~Le~e~~~~q~~le~Lr~EKVdlEn~LE~EQE~lvN~L~Kqm~~l~~eKr~Lq~~l~~~~s~~~s~~d~~~~~  218 (310)
T PF09755_consen  139 KLQKKIERLEKEKSAKQEELERLRREKVDLENTLEQEQEALVNRLWKQMDKLEAEKRRLQEKLEQPVSAPPSPRDTVNVS  218 (310)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCcchHHhhc
Confidence            4555555555444455555556666666666665332111    233333333334444444431           1   


Q ss_pred             --HhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH--------HHHHHhhcHHHHHHHHHHHHHHHhhH
Q 006305          504 --KSKKEAAESRLRAVEAEMETLRSKVISLEDE--------VEKERALSEENIANFQKSKDELSKVK  560 (651)
Q Consensus       504 --~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E--------iekER~~s~E~~aKc~~LEeeL~R~k  560 (651)
                        +..-..+.+++..+-.|+..|+..+-.-+.+        +++||.+.+|+..--++|.-++.|..
T Consensus       219 ~~~Dt~e~~~shI~~Lr~EV~RLR~qL~~sq~e~~~k~~~~~~eek~ireEN~rLqr~L~~E~erre  285 (310)
T PF09755_consen  219 EENDTAERLSSHIRSLRQEVSRLRQQLAASQQEHSEKMAQYLQEEKEIREENRRLQRKLQREVERRE  285 (310)
T ss_pred             ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              1224668888999999999988866555443        57889999999999999998888866

>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.52  E-value=1.1e+02  Score=36.16  Aligned_cols=190  Identities=21%  Similarity=0.279  Sum_probs=104.5

Q ss_pred             HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH---HHHHHhh
Q 006305          392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEM---KAAIAAR  468 (651)
Q Consensus       392 e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el---~a~~~~~  468 (651)
                      +..++.+..|+..|..|+.||..|-.-|...+.+++-++..|++..+++.-|-.-++....-....+.+=   +.-.-.+
T Consensus       314 el~iseiqkLkqqL~smErek~~l~anL~dtqt~le~T~~~l~~~~er~~~l~e~v~al~rlq~~~d~kgEk~rdg~~ka  393 (772)
T KOG0999|consen  314 ELNISEIQKLKQQLMSMEREKAELLANLQDTQTQLEHTEGDLMEQRERVDRLTEHVQALRRLQDSKDKKGEKGRDGGEKA  393 (772)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHhHHhhhhhccccccccccc
Confidence            4456678889999999999999999999999999999999999999888877776655433333322220   0000011


Q ss_pred             hhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305          469 GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN  548 (651)
Q Consensus       469 ~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK  548 (651)
                      .+.+-.|.-++ =....+.+|...--...++|+...... .---+-...+.++..+..|+.+|+.--             
T Consensus       394 d~~e~~l~a~e-~~a~k~~~a~~e~i~lk~ql~~l~~~~-n~tde~~~~e~evq~l~~kl~llekas-------------  458 (772)
T KOG0999|consen  394 DLYEVDLNALE-ILACKYAVAVDEMIQLKDQLKALYHQL-NYTDEKVQYEKEVQELVEKLRLLEKAS-------------  458 (772)
T ss_pred             hhHHhhhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhh-cccchhhhHHHHHHHHHHHHHHHHHhh-------------
Confidence            12333333222 011224444433334444444433220 001123446788888888888886432             


Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhHHHHHHHhhhhHHHHH
Q 006305          549 FQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQK  601 (651)
Q Consensus       549 c~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQEkELA~AA~KLAECQk  601 (651)
                      .-.|+-+++..-.-++..+++    ..++..++-.--| +||.+-.-.-+|-.
T Consensus       459 la~l~~evq~~t~ia~~~~~t----l~~A~~~lv~~Sd-eLaqlyh~vc~~n~  506 (772)
T KOG0999|consen  459 LAELEKEVQKATEIAEEGTET----LVNAQDELVTFSD-ELAQLYHHVCECNN  506 (772)
T ss_pred             HHHhHHHHHHHHHHHhccccc----chhhhHhHhhhhH-HHHHHHHHHHHHcC
Confidence            334555555555322222222    2222233333334 56666555556654

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=82.22  E-value=1.5e+02  Score=37.31  Aligned_cols=95  Identities=19%  Similarity=0.268  Sum_probs=76.1

Q ss_pred             HHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH-------HHHHHHH
Q 006305          392 EVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAV-------EVEMKAA  464 (651)
Q Consensus       392 e~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~-------E~el~a~  464 (651)
                      .....+..+|++.|.++..+..+.....+.|.++++-...+..........|..+++..++.++++       ..+|+.+
T Consensus       674 ~~~~~~~~~l~~~L~~~r~~i~~~~~~i~q~~~~~qk~e~~~~~~~~~~~~l~~e~~~~k~e~~~v~~s~~~k~~~Le~i  753 (1200)
T KOG0964|consen  674 NESRSELKELQESLDEVRNEIEDIDQKIDQLNNNMQKVENDRNAFKREHEKLKRELNTIKGEKSRVQESLEPKGKELEEI  753 (1200)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhHHHHHHHHH
Confidence            344558888888888888888888888888888888888888888888888999988887777776       4566777


Q ss_pred             HHhhhhhhhhhhhHHHHHHHHH
Q 006305          465 IAARGVAESKLSVVEAEMKTQL  486 (651)
Q Consensus       465 ~~~~~~~e~kl~~lE~Ei~~eL  486 (651)
                      .+++..+++..+.+|+||-.+|
T Consensus       754 ~~~l~~~~~~~~~~e~el~sel  775 (1200)
T KOG0964|consen  754 KTSLHKLESQSNYFESELGSEL  775 (1200)
T ss_pred             HHHHHHHHHHHHhHHHHHhHHH
Confidence            8888888998888888766554

>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]

Probab=81.95  E-value=97  Score=35.26  Aligned_cols=113  Identities=21%  Similarity=0.295  Sum_probs=75.8

Q ss_pred             hhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHh----h----------hhHHHHHHHHHHHHHHHHHHhhhhhhhhh
Q 006305           59 NDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAV----S----------GWEKAENELSTLKQQLKAASQKNSALENR  124 (651)
Q Consensus        59 ~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv----~----------GWEKAe~E~~slK~qLe~~~~~~~~~edr  124 (651)
                      ++..+.|.|-.+.-+-++   +++.--|.|-.--+.    +          |-+--+.+|-.|..|||+-..+.-+.+.-
T Consensus       244 Edq~~~LsE~~~k~~q~L---e~~~~~~~~~~P~t~~~~~~~~e~~~~~sD~~~~L~k~vQ~L~AQle~~R~q~e~~q~~  320 (593)
T KOG4807|consen  244 EDQQNRLSEEIEKKWQEL---EKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQLEAWRLQGEAPQSA  320 (593)
T ss_pred             HHHHHHHHHHHHHHHHHH---HhhhhhhcCCCCccccCCCccccccCCCCcchHHHHHHHHHHHHHHHHHHHhccCchhh
Confidence            567788888777776655   454444444332222    2          55667889999999999988776543322


Q ss_pred             hcch------h-hHHH-HHHHHHHHhhHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHH
Q 006305          125 VSHL------D-GALK-ECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVD  174 (651)
Q Consensus       125 vshL------D-~ALK-ECmrQLr~~rEEqEqki~dav~kks~e~e~~~~elE~kl~e  174 (651)
                      +.-+      | .-++ -|-|-+--..+-+-++|.|.--.--+|+++++-+-+.-|+|
T Consensus       321 ~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEKdrLLAE  378 (593)
T KOG4807|consen  321 LRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEKDRLLAE  378 (593)
T ss_pred             HhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence            2111      1 1122 48888888888888999998888888888888877776665

>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure

Probab=81.94  E-value=18  Score=30.71  Aligned_cols=47  Identities=36%  Similarity=0.434  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305          493 KQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER  539 (651)
Q Consensus       493 ~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER  539 (651)
                      ++...++|.-+.+.+-.++++|..++.-...|..+|..|+.+++.=|
T Consensus        13 kQ~~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r   59 (61)
T PF08826_consen   13 KQAIQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELR   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            46667788888888889999999999999999999999999987633

It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.

>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []

Probab=81.93  E-value=70  Score=33.40  Aligned_cols=46  Identities=35%  Similarity=0.466  Sum_probs=24.4

Q ss_pred             HHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 006305          407 NMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANK  452 (651)
Q Consensus       407 KleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~ane  452 (651)
                      +++-++.+|+.-|...+.+....+..|.+.+.....|..++..+..
T Consensus         2 ~aEr~k~Ele~rL~q~eee~~~a~~~L~e~e~~a~~Leek~k~aee   47 (246)
T PF00769_consen    2 EAEREKQELEERLRQMEEEMRRAQEALEESEETAEELEEKLKQAEE   47 (246)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444555555555555555555555555555555555555444433

Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=81.76  E-value=15  Score=36.42  Aligned_cols=76  Identities=33%  Similarity=0.485  Sum_probs=17.0

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA  463 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a  463 (651)
                      +.|+..+.....++..+|-.+..+..+++..+......|...+..+...+.++..|..++..-+...+.+..++.+
T Consensus        80 ~~ELael~r~~~el~~~L~~~~~~l~~l~~~~~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~  155 (194)
T PF08614_consen   80 QEELAELYRSKGELAQQLVELNDELQELEKELSEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQA  155 (194)
T ss_dssp             ----------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444443333333333333333333333333333334334444444444444444444433334443333333

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=81.71  E-value=44  Score=36.17  Aligned_cols=46  Identities=24%  Similarity=0.502  Sum_probs=29.0

Q ss_pred             HHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ  446 (651)
Q Consensus       394 ~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q  446 (651)
                      +-.++.+||..++||+-|+--...-|       +++...|.-..++.++-..+
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQl-------eSlEAaLqKQKqK~e~ek~e   61 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQL-------ESLEAALQKQKQKVEEEKNE   61 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHHHHHHHHhhh
Confidence            34588999999999999887655554       44444444444444443333

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PLN03229 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha; Provisional

Probab=81.68  E-value=1.3e+02  Score=36.49  Aligned_cols=111  Identities=23%  Similarity=0.180  Sum_probs=63.1

Q ss_pred             hhhhhhhhHHHHHHHHHHHHHHhHHHHH-HHHHH------------HHhhHHHHHHHHHHHHHH---HHHHHHHHhhhHH
Q 006305          470 VAESKLSVVEAEMKTQLALANKSKQAAE-EEVKS------------AKSKKEAAESRLRAVEAE---METLRSKVISLED  533 (651)
Q Consensus       470 ~~e~kl~~lE~Ei~~eL~la~~s~~~a~-eelk~------------~~~k~~~lEs~l~~~eaE---~~~L~~Ki~~Le~  533 (651)
                      .+..||..+-.||..+++-+=+|-.+-. +.++.            ..+|.+.|+.++..-=.+   .-.|++||..|..
T Consensus       601 ~lkeki~~~~~Ei~~eie~v~~S~gL~~~~~~k~e~a~~~~~p~~~~k~KIe~L~~eIkkkIe~av~ss~LK~k~E~Lk~  680 (762)
T PLN03229        601 DLKEKVEKMKKEIELELAGVLKSMGLEVIGVTKKNKDTAEQTPPPNLQEKIESLNEEINKKIERVIRSSDLKSKIELLKL  680 (762)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccCchhhhhhhhhhcccccCCChhhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            3455666666677777666655532111 11211            134455555444332111   2357778899988


Q ss_pred             HHHHHHhhcH---HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhcCcchhhhhhH---HHHHHHhh
Q 006305          534 EVEKERALSE---ENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQELKINQE---EELAVAAS  594 (651)
Q Consensus       534 EiekER~~s~---E~~aKc~~LEeeL~R~k~~~~~~~e~~~~~~~~~n~dlKiKQE---kELA~AA~  594 (651)
                      |+  .++...   +...|.+.|+.||...--            .+....+||-|+|   .||+.|++
T Consensus       681 Ev--aka~~~pd~~~k~kieal~~qik~~~~------------~a~~~~~lkek~e~l~~e~~~~~~  733 (762)
T PLN03229        681 EV--AKASKTPDVTEKEKIEALEQQIKQKIA------------EALNSSELKEKFEELEAELAAARE  733 (762)
T ss_pred             HH--HhcCCCCCcchHHHHHHHHHHHHHHHH------------HHhccHhHHHHHHHHHHHHHHhhc
Confidence            88  444432   344788888888876553            3456778888998   45555544

>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]

Probab=81.65  E-value=70  Score=40.65  Aligned_cols=133  Identities=22%  Similarity=0.297  Sum_probs=60.9

Q ss_pred             hhhhhhcchhhHHHHHHHHHHHhhHH---HHHHHHHHH---HHHhhhHhhhhHHHHH---HHHHHHHHHHHhhhHhh---
Q 006305          120 ALENRVSHLDGALKECVRQLRQAREE---QEQRIQETV---SKQNLEWESKKSELES---KLVDLQKKLQTAKSEAA---  187 (651)
Q Consensus       120 ~~edrvshLD~ALKECmrQLr~~rEE---qEqki~dav---~kks~e~e~~~~elE~---kl~e~~~~L~~a~~e~~---  187 (651)
                      +..+-+..|+.++.+--|||--++|.   -|++|-|+-   .-..+++|+++.+...   -..||..+++..+.-+-   
T Consensus      1222 vs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~~~ik~sdi~GA 1301 (1758)
T KOG0994|consen 1222 VSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQLEKIKESDILGA 1301 (1758)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCchhH
Confidence            34445666777777776776655553   344444433   3333666666655432   22333333333322110   


Q ss_pred             -hhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhHHHHHHHHHHHHHHH
Q 006305          188 -ASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLK  258 (651)
Q Consensus       188 -a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsvKKiakLEaECqRLr  258 (651)
                       .+++.....-++.-..-|++-. ++-.....=  |.+|+ |..+.+|.-.  |.++-+.|.+|.++..-|-
T Consensus      1302 ~~~~r~a~~~s~ea~~r~~~s~~-~l~s~~~~s--R~e~l-~~k~k~~f~~--~~~n~~~L~el~~~l~sL~ 1367 (1758)
T KOG0994|consen 1302 FNSTRHAYEQSAEAERRVDASSR-ELASLVDQS--RVEEL-LVKQKGDFGG--LAENSRLLVELRAELSSLP 1367 (1758)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhh-cccchhhhh--HHHHH-HHHhhhcccc--cccccHHHHHHHHHhcCCC
Confidence             0111222222222222222210 111110000  33332 3344444433  8899999999999988653

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.59  E-value=78  Score=33.73  Aligned_cols=9  Identities=33%  Similarity=0.730  Sum_probs=4.0

Q ss_pred             HHHHHHHHh
Q 006305          550 QKSKDELSK  558 (651)
Q Consensus       550 ~~LEeeL~R  558 (651)
                      ..++.++.+
T Consensus       263 ~~~~~~l~~  271 (423)
T TIGR01843       263 NKARDRLQR  271 (423)
T ss_pred             HHHHHHHhh
Confidence            344444444

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD

Probab=81.59  E-value=1.2e+02  Score=35.67  Aligned_cols=48  Identities=27%  Similarity=0.365  Sum_probs=24.4

Q ss_pred             HHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          402 EEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAF  449 (651)
Q Consensus       402 EeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~  449 (651)
                      ..+++.++.+..+++..+.....++...+.++..++.++.++..++..
T Consensus       208 ~~~~~~le~el~~l~~~~e~l~~~i~~l~~ele~a~~~l~~l~~~~~~  255 (650)
T TIGR03185       208 LSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKFRS  255 (650)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444555555555555555555555555555555555555554443

This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.

>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family

Probab=81.16  E-value=81  Score=33.62  Aligned_cols=18  Identities=22%  Similarity=0.401  Sum_probs=9.9

Q ss_pred             HHHHHHHHHHHHHHHhhH
Q 006305          543 EENIANFQKSKDELSKVK  560 (651)
Q Consensus       543 ~E~~aKc~~LEeeL~R~k  560 (651)
                      .++......++.++....
T Consensus       249 ~~~~~~l~~~~~~l~~~~  266 (423)
T TIGR01843       249 TEAQARLAELRERLNKAR  266 (423)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            344555556666665544

Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.

>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []

Probab=80.77  E-value=46  Score=36.02  Aligned_cols=116  Identities=24%  Similarity=0.279  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHH
Q 006305          436 AELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLR  515 (651)
Q Consensus       436 aE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~  515 (651)
                      |=+|+.+|..||+-.++.++.-+-+|...++...-.-.|+..-..|    .       ....-+...+-+....+|..-.
T Consensus        16 aLqKIqelE~QldkLkKE~qQrQfQleSlEAaLqKQKqK~e~ek~e----~-------s~LkREnq~l~e~c~~lek~rq   84 (307)
T PF10481_consen   16 ALQKIQELEQQLDKLKKERQQRQFQLESLEAALQKQKQKVEEEKNE----Y-------SALKRENQSLMESCENLEKTRQ   84 (307)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhh----h-------hhhhhhhhhHHHHHHHHHHHHH
Confidence            3467778888888888888777666666555555444444211111    1       1111122234455666788888


Q ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q 006305          516 AVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV  569 (651)
Q Consensus       516 ~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~~~e~  569 (651)
                      .+..++..-...|+.||+.+..=|.       ....|+.+|.|.+.+++-+|.+
T Consensus        85 Klshdlq~Ke~qv~~lEgQl~s~Kk-------qie~Leqelkr~KsELErsQ~~  131 (307)
T PF10481_consen   85 KLSHDLQVKESQVNFLEGQLNSCKK-------QIEKLEQELKRCKSELERSQQA  131 (307)
T ss_pred             HhhHHHhhhHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888888889999988875444       5667888888888877665554

Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].

>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association []

Probab=80.49  E-value=73  Score=34.27  Aligned_cols=50  Identities=26%  Similarity=0.338  Sum_probs=30.3

Q ss_pred             hHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          397 RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQ  446 (651)
Q Consensus       397 q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~q  446 (651)
                      =...|++.++.|..+..-|...+......+..+..+....+..+..|+.-
T Consensus       150 l~~~L~~~~~~L~~D~~~L~~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~  199 (325)
T PF08317_consen  150 LKEGLEENLELLQEDYAKLDKQLEQLDELLPKLRERKAELEEELENLKQL  199 (325)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455666666666666666666666666666655555555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	651
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-15
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-14
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-13
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	2e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-07
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-04
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	6e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	7e-15
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	3e-08
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-07
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-09
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	3e-04
2zuo_A	861	MVP, major vault protein; repeat domains, protein-	2e-06

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 79.1 bits (195), Expect = 2e-15
 Identities = 47/234 (20%), Positives = 94/234 (40%), Gaps = 16/234 (6%)

Query: 387  IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQL-------KEAELK 439
            ++ +L+      AE EE    + A+K ELE  L E + R+E  + +        K+ + +
Sbjct: 897  LQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQ 956

Query: 440  LEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEE 499
            + +LE QL     ++Q +++E   A       E  +      M+ Q     K ++  EE 
Sbjct: 957  MLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDI----LIMEDQNNKLTKERKLLEER 1012

Query: 500  VKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV 559
            V    +     E + + +        S +  LE  ++KE    +E     +K + E S +
Sbjct: 1013 VSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDL 1072

Query: 560  KQEIELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
             ++I        +      +     +EEEL  A ++  +      +  +++R L
Sbjct: 1073 HEQIAELQAQIAEL-----KAQLAKKEEELQAALARLEDETSQKNNALKKIREL 1121

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 75.6 bits (186), Expect = 3e-14
 Identities = 42/226 (18%), Positives = 89/226 (39%), Gaps = 20/226 (8%)

Query: 397  RTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQA 456
            R+ +L+ E + M+ +  +LE  L+E +   +  Q +   A+ K++++E  +         
Sbjct: 942  RSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNK 1001

Query: 457  VEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQA---AEEEVKSAKSKKEAAESR 513
            +  E K          + L+  E + K    L NK +      E  +K  +  ++  E  
Sbjct: 1002 LTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKI 1061

Query: 514  LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE------LQH 567
             R +E E   L  ++  L+ ++ + +A          K ++EL      +E         
Sbjct: 1062 KRKLEGESSDLHEQIAELQAQIAELKA-------QLAKKEEELQAALARLEDETSQKNNA 1114

Query: 568  EVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSL 613
              K++ L     +L    +E+L    +   + +K    L  +L +L
Sbjct: 1115 LKKIRELESHISDL----QEDLESEKAARNKAEKQKRDLSEELEAL 1156

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 71.4 bits (175), Expect = 6e-13
 Identities = 38/205 (18%), Positives = 90/205 (43%), Gaps = 9/205 (4%)

Query: 385  SSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
              ++ ++ ++  +  +L +E + +    S+L  +L E + + +       + E  + ELE
Sbjct: 986  KKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELE 1045

Query: 445  TQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
             +L    KS+Q +E   +           +++    E++ Q+A         EEE+++A 
Sbjct: 1046 VRLKKEEKSRQELEKIKRKLEGESSDLHEQIA----ELQAQIAELKAQLAKKEEELQAAL 1101

Query: 505  SKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE 564
            ++ E   S+      ++  L S +  L++++E E+A   +     +   +EL  +K E+E
Sbjct: 1102 ARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELE 1161

Query: 565  LQHEVKLQYLAGSNQELKINQEEEL 589
               +          QEL+ +  ++ 
Sbjct: 1162 DTLDTTAT-----QQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 54.1 bits (130), Expect = 1e-07
 Identities = 40/216 (18%), Positives = 84/216 (38%), Gaps = 15/216 (6%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            +  +  ++          +   K+  +   +     E+ E     L+ +   A  K   +
Sbjct: 929  LHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKM 988

Query: 122  ENRVSHLDG----------ALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESK 171
            E+ +  ++            L+E V  L     E+E++ +  ++K   + ES  SELE +
Sbjct: 989  EDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKN-LTKLKNKHESMISELEVR 1047

Query: 172  LVDLQKK---LQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDL 228
            L   +K    L+  K +    +  DL  ++   + Q + LK +L    +EL+  +   + 
Sbjct: 1048 LKKEEKSRQELEKIKRKLEGES-SDLHEQIAELQAQIAELKAQLAKKEEELQAALARLED 1106

Query: 229  STKAAETASKQHLESIKKLAKVEAECLRLKAVVRKA 264
             T     A K+  E    ++ ++ +    KA   KA
Sbjct: 1107 ETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 38/198 (19%), Positives = 80/198 (40%), Gaps = 10/198 (5%)

Query: 28   SSLSERFSDDQTHSSQSSEATSKAPPLDEVVND---SVKTLTEKLSAALLNVSAKEDLVK 84
            ++  +   +  T   +  +       +++  N      K L E++S    N++ +E+  K
Sbjct: 969  AARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAK 1028

Query: 85   QHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQARE 144
               K+  +  S   + E  L   ++  +   +    LE   S L   + E   Q+ + + 
Sbjct: 1029 NLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKA 1088

Query: 145  EQEQRIQE-TVSKQNLEWE-SKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAE 202
            +  ++ +E   +   LE E S+K+    K+ +L+  +   + +  +       +    AE
Sbjct: 1089 QLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEK-----AARNKAE 1143

Query: 203  KQNSALKLELLSLVKELE 220
            KQ   L  EL +L  ELE
Sbjct: 1144 KQKRDLSEELEALKTELE 1161

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 36/173 (20%), Positives = 80/173 (46%), Gaps = 17/173 (9%)

Query: 383  DESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEE 442
            + + +K + E +I   +ELE  L+     + ELE   ++ +        Q+ E + ++ E
Sbjct: 1029 NLTKLKNKHESMI---SELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAE 1085

Query: 443  LETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKS 502
            L+ QLA   +  QA    ++   + +  A  K+  +E+ +              +E+++S
Sbjct: 1086 LKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHI-----------SDLQEDLES 1134

Query: 503  AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555
             K+ +  AE + R +  E+E L+++   LED ++      E   ++++   D+
Sbjct: 1135 EKAARNKAEKQKRDLSEELEALKTE---LEDTLDTTATQQELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 30/203 (14%), Positives = 79/203 (38%), Gaps = 7/203 (3%)

Query: 63   KTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALE 122
              L EKL A     +  E++  + A   +E      + E  +   +++ +    +   ++
Sbjct: 895  NLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQ 954

Query: 123  NRVSHLDGALKECVRQLRQAREEQEQRIQ--ETVSKQNLEWESKKSELESKLVDLQKKLQ 180
             ++  L+  L+E     ++ + E+       + +    L  E + ++L  +   L++++ 
Sbjct: 955  QQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVS 1014

Query: 181  TAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQH 240
               +  A   +     K +   K  +  +  +  L   L+     R    K       + 
Sbjct: 1015 DLTTNLAEEEE-----KAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGES 1069

Query: 241  LESIKKLAKVEAECLRLKAVVRK 263
             +  +++A+++A+   LKA + K
Sbjct: 1070 SDLHEQIAELQAQIAELKAQLAK 1092

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 51.8 bits (124), Expect = 6e-07
 Identities = 40/347 (11%), Positives = 127/347 (36%), Gaps = 63/347 (18%)

Query: 98   EKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQ 157
             +   E + L+++L+A ++  +  E     L     +         E + +  +E   ++
Sbjct: 888  TQLCEEKNLLQEKLQAETELYAEAEEMRVRL---AAKKQELEEILHEMEARIEEEE--ER 942

Query: 158  NLEWESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVK 217
            + + +++K +++ +++DL+++L+  ++              +  + +      ++  +  
Sbjct: 943  SQQLQAEKKKMQQQMLDLEEQLEEEEAA------------RQKLQLEKVTADGKIKKMED 990

Query: 218  ELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSS 277
            ++ +   + +  TK  +   ++  +    LA+ E +   L  +  K              
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKH------------- 1037

Query: 278  IYVGSFTDSQSDNGERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGR 337
                   +S     E  L  E  + +  +    + E       +S L  +  +       
Sbjct: 1038 -------ESMISELEVRLKKEEKSRQELEKIKRKLE-----GESSDLHEQIAE------- 1078

Query: 338  NVMVPSVDINLMDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHR 397
                      L     E++   A  + E ++    +    +   + +++   ++  L   
Sbjct: 1079 ----------LQAQIAELKAQLAKKEEELQAALARL----EDETSQKNNALKKIRELESH 1124

Query: 398  TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELE 444
             ++L+E+LE+ +A +++ E   ++    LE  + +L++        +
Sbjct: 1125 ISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQQ 1171

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 16/194 (8%)

Query: 26   SVSSLSERFSDDQTHSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAALLNVSAKEDLVKQ 85
             +  + ++ +          E  S          +  K LT+  +     +S  E  +K+
Sbjct: 991  DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKK 1050

Query: 86   HAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQARE- 144
              K  +E      K E E S L +Q+     + + L+ +++  +  L+  + +L      
Sbjct: 1051 EEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDETSQ 1110

Query: 145  ---------EQEQRIQ------ETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAAS 189
                     E E  I       E+      + E +K +L  +L  L+ +L+      A  
Sbjct: 1111 KNNALKKIRELESHISDLQEDLESEKAARNKAEKQKRDLSEELEALKTELEDTLDTTATQ 1170

Query: 190  ADRDLCSKLEAAEK 203
             +       +  +K
Sbjct: 1171 QELRGSDYKDDDDK 1184

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 42.1 bits (99), Expect = 6e-04
 Identities = 33/206 (16%), Positives = 80/206 (38%), Gaps = 14/206 (6%)

Query: 430  QNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKL---SVVEAEMKTQL 486
            + +++  + +L+  + +   A    + +E +       + + + KL   + + AE +   
Sbjct: 856  EEEMQAKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMR 915

Query: 487  ALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENI 546
                  KQ  EE +   +++ E  E R + ++AE +        ++ ++       EE  
Sbjct: 916  VRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK-------KMQQQMLDLEEQLEEEE 968

Query: 547  ANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQEL---KINQEEELAVAASKFAECQKTI 603
            A  QK + E      +I+   +  +  +   N +L   +   EE ++   +  AE ++  
Sbjct: 969  AARQKLQLEKVTADGKIKKMED-DILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKA 1027

Query: 604  ASLGRQLRSLVTLDDFLIDSEKPLEH 629
             +L +      ++   L    K  E 
Sbjct: 1028 KNLTKLKNKHESMISELEVRLKKEEK 1053

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 77.5 bits (191), Expect = 7e-15
 Identities = 30/197 (15%), Positives = 73/197 (37%), Gaps = 13/197 (6%)

Query: 379  QPNADESSIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAEL 438
            Q        K EL+ L          +E  +     LE  + + QR+++    + K    
Sbjct: 894  QCCYRRMMAKRELKKL----KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 439  KLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMK---TQLALANKSKQA 495
            K+  LE   +   +  ++    ++ +      A +++  ++ E+     +L      K+ 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 496  AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE 555
             EE     K + E   S L+     ++T + +   L   +  +     E +   +K  +E
Sbjct: 1010 IEEWADKYKHETEQLVSELKEQNTLLKTEKEE---LNRRIHDQAKEITETME--KKLVEE 1064

Query: 556  LSKVKQEIELQHEVKLQ 572
              +++ ++     ++ Q
Sbjct: 1065 TKQLELDLN-DERLRYQ 1080

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 65.9 bits (161), Expect = 3e-11
 Identities = 30/205 (14%), Positives = 75/205 (36%), Gaps = 22/205 (10%)

Query: 388  KAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQL 447
                    +R    + EL+ ++ E   +E   K+    LE   N++ + + K++E   + 
Sbjct: 889  AIVYLQCCYRRMMAKRELKKLKIEARSVER-YKKLHIGLE---NKIMQLQRKIDEQNKEY 944

Query: 448  AFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKK 507
                +    +E+              +L + E E K     A     + +EE+   + + 
Sbjct: 945  KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKN----ATNRVLSLQEEIAKLRKEL 1000

Query: 508  EAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQ- 566
               ++  + +E   +  + +   L  E++++              K E  ++ + I  Q 
Sbjct: 1001 HQTQTEKKTIEEWADKYKHETEQLVSELKEQN----------TLLKTEKEELNRRIHDQA 1050

Query: 567  ---HEVKLQYLAGSNQELKINQEEE 588
                E   + L    ++L+++  +E
Sbjct: 1051 KEITETMEKKLVEETKQLELDLNDE 1075

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 32/181 (17%), Positives = 75/181 (41%), Gaps = 18/181 (9%)

Query: 84   KQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVRQLRQAR 143
            K  A+  E         EN++  L++++   +++  +L  ++++L+        +LR   
Sbjct: 910  KIEARSVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDV 969

Query: 144  EEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAAA------SADRDLCSK 197
            E      +E          ++   L+ ++  L+K+L   ++E             +    
Sbjct: 970  ERLRMSEEE-----AKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQL 1024

Query: 198  LEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKKLAKVEAECLRL 257
            +   ++QN+ LK E   L + +       D + +  ET  K+ +E  K+L +++    RL
Sbjct: 1025 VSELKEQNTLLKTEKEELNRRIH------DQAKEITETMEKKLVEETKQL-ELDLNDERL 1077

Query: 258  K 258
            +
Sbjct: 1078 R 1078

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 56.3 bits (136), Expect = 3e-08
 Identities = 17/151 (11%), Positives = 54/151 (35%), Gaps = 1/151 (0%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            +  L  K+        +  + +                    L   +++ K A+ +  +L
Sbjct: 930  IMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSL 989

Query: 122  ENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181
            +  ++ L   L +   + +   EE   + +    +   E + + + L+++  +L +++  
Sbjct: 990  QEEIAKLRKELHQTQTEKKTI-EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHD 1048

Query: 182  AKSEAAASADRDLCSKLEAAEKQNSALKLEL 212
               E   + ++ L  + +  E   +  +L  
Sbjct: 1049 QAKEITETMEKKLVEETKQLELDLNDERLRY 1079

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 53.6 bits (129), Expect = 2e-07
 Identities = 29/233 (12%), Positives = 68/233 (29%), Gaps = 22/233 (9%)

Query: 390  ELEVLIHRTAELEEELENMRAEKSELEMDLKES----QRRLETSQNQLKEAELKLEELET 445
              + +   T  L+  L           M  +      Q+ +     ++         +  
Sbjct: 834  RYQCMRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYL 893

Query: 446  QLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKS 505
            Q  +  +   A     K  I AR  +  +   +   ++ ++    +      +E KS   
Sbjct: 894  QCCY--RRMMAKRELKKLKIEAR--SVERYKKLHIGLENKIMQLQRKIDEQNKEYKSLLE 949

Query: 506  KKEAAESRLRAVEAEMETLRSKVISLEDE---VEKERALSEENIANFQKSKDELSKVKQE 562
            K    E        ++ +   ++   E+E           +E IA  +K   +    K+ 
Sbjct: 950  KMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKT 1009

Query: 563  IELQHEVKLQYLAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVT 615
            IE   +           + K   E+ ++    +    +     L R++     
Sbjct: 1010 IEEWAD-----------KYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 31/202 (15%), Positives = 66/202 (32%), Gaps = 23/202 (11%)

Query: 62   VKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSAL 121
            ++  T  L A L     +        +     +    +         + LKA        
Sbjct: 838  MRDATIALQALLRGYLVRNKYQMMLREHKSIIIQKHVRGWLARVHYHRTLKAIVYLQCCY 897

Query: 122  ENRVSHLDGALKECVRQLRQAREEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQT 181
               ++          R+L++ + E     +          +     LE+K++ LQ+K+  
Sbjct: 898  RRMMAK---------RELKKLKIEARSVERY---------KKLHIGLENKIMQLQRKIDE 939

Query: 182  AKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHL 241
               E      + L  K+   E   S    +L S V+ L +   E   +T    +  ++  
Sbjct: 940  QNKEY-----KSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNATNRVLSLQEEIA 994

Query: 242  ESIKKLAKVEAECLRLKAVVRK 263
            +  K+L + + E   ++    K
Sbjct: 995  KLRKELHQTQTEKKTIEEWADK 1016

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 65.6 bits (159), Expect = 4e-11
 Identities = 72/540 (13%), Positives = 169/540 (31%), Gaps = 126/540 (23%)

Query: 139 LRQAREEQEQRIQETVSKQNLEW-------ESKKSELESKL-VDLQKKLQTAKSEAAASA 190
           L   +EE  Q+  E V + N ++       E ++  + +++ ++ + +L           
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYN--------- 121

Query: 191 DRDLCSKLEAA-EKQNSALKLELLSLVKELELRIVERDL----STKAAETASKQHLE--- 242
           D  + +K   +  +    L+  LL L     + +++  L    +  A +      ++   
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDVCLSYKVQCKM 180

Query: 243 -------SIKKLAKVEAECLRLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERLL 295
                  ++K     E     L+ ++ +  PN  ++S   S+I +     S      RLL
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR--IHSIQAELRRLL 238

Query: 296 GNET--------DNCKISDSEV-----NECEPNSSTSWASALAIEPDKNVKAVGRNVMVP 342
            ++          N  + +++        C+          L     K V          
Sbjct: 239 KSKPYENCLLVLLN--VQNAKAWNAFNLSCK---------ILLTTRFKQV--------TD 279

Query: 343 SVDINLMDDFLEMERLAALPDTESRSF---CVEVGPASDQPNADE------SSIKAELEV 393
            +                L   E +S     ++  P               S I   +  
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339

Query: 394 LIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKS 453
            +          +N +       ++  +    +E+S N L+ AE +  ++  +L+    S
Sbjct: 340 GLAT-------WDNWK------HVNCDKLTTIIESSLNVLEPAEYR--KMFDRLSVFPPS 384

Query: 454 KQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESR 513
                +               LS++  ++               +  K +  +K+  ES 
Sbjct: 385 ---AHIPTIL-----------LSLIWFDVIKS-----DVMVVVNKLHKYSLVEKQPKEST 425

Query: 514 LRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIE---LQHEVK 570
           +      +E L+ K   LE+E    R++ +    N  K+ D    +   ++     H   
Sbjct: 426 ISIPSIYLE-LKVK---LENEYALHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSH--- 476

Query: 571 LQY-LAGSNQELKINQEEELAVAASKFAECQKTIASLGRQLRSLVTLDDFLIDSEKPLEH 629
           + + L       ++     + +   +F E QK          +  ++ + L   +    +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF-RFLE-QKIRHD-STAWNASGSILNTLQQLKFYKPY 533

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.0 bits (147), Expect = 9e-10
 Identities = 56/373 (15%), Positives = 107/373 (28%), Gaps = 107/373 (28%)

Query: 39  THSSQSSEATSKAPPLDEVVNDSVKTLTEKLSAAL----LNVSAKEDLVKQHAKVAEEAV 94
           T   Q ++  S A      ++    TLT     +L    L+    +DL ++        +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRP-QDLPREVLTTNPRRL 330

Query: 95  SG-WEKAENELSTLKQQLKAASQK-NSALENRVSHLDGA-LKECVRQLRQAREEQEQRIQ 151
           S   E   + L+T          K  + +E+ ++ L+ A  ++   +L          I 
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP--SAHIP 388

Query: 152 ETVSKQNLE--W-ESKKSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSAL 208
             +    L   W +  KS++   +  L K                        EKQ    
Sbjct: 389 TIL----LSLIWFDVIKSDVMVVVNKLHKYS--------------------LVEKQPKES 424

Query: 209 KLELLSL----------VKELELRIVERDLSTKAAETASKQ--------------HLESI 244
            + + S+             L   IV+     K  ++                  HL++I
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484

Query: 245 KKLAKVEAECLR--------LKAVVRKASPNTENKSFTPSSI-----YVGSFTDSQSDNG 291
           +   ++     R        L+  +R  S          +++     Y     D+     
Sbjct: 485 EHPERMTL--FRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY- 541

Query: 292 ERLLGNETDNCKISDSEVNECEPNSSTSWASALAIEPDKNVKAVGRNVMVPSVDINLMDD 351
           ERL+    D        + + E N        L      ++           + I LM +
Sbjct: 542 ERLVNAILDF-------LPKIEEN--------LICSKYTDL-----------LRIALMAE 575

Query: 352 ----FLEMERLAA 360
               F E  +   
Sbjct: 576 DEAIFEEAHKQVQ 588

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.6 bits (133), Expect = 5e-08
 Identities = 90/593 (15%), Positives = 167/593 (28%), Gaps = 172/593 (29%)

Query: 54  LDEVVND-SVKTLTEKLSAALLNVSAKE--DLVKQHAKVAEEAVSGWEKAENELSTLKQQ 110
            D  V++   K + +   + L   S +E   ++     V                TL  +
Sbjct: 26  EDAFVDNFDCKDVQDMPKSIL---SKEEIDHIIMSKDAV--------SGTLRLFWTLLSK 74

Query: 111 LKAASQK--NSALENRVSHLDGALKECVRQ---LRQAREEQEQRIQETV---SKQNLEWE 162
            +   QK     L      L   +K   RQ   + +   EQ  R+       +K N+   
Sbjct: 75  QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 163 SKKSELESKLVDLQKK----LQ----TAKSEAAASADRD---LCSK------LEAAEKQN 205
               +L   L++L+      +     + K+  A          C        L      +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS 194

Query: 206 SALKLELLSLVKELELRIVERDLSTKAAETASKQHLESIKK------LAKVEAECL---- 255
               LE+L   ++L  +I     S     +  K  + SI+        +K    CL    
Sbjct: 195 PETVLEML---QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLL 251

Query: 256 ---------------------RLKAVVRKASPNTENKSFTPSSIYVGSFTDSQSDNGERL 294
                                R K V    S  T          +  + T  +    + L
Sbjct: 252 NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH--ISLDHHSMTLTPDEV---KSL 306

Query: 295 LGNETDNCKISD--SEVNECEPNSSTSWASALAIEPD--KNVKAVG----RNVMVPSVDI 346
           L     +C+  D   EV    P   +  A ++        N K V       ++  S+++
Sbjct: 307 LLKYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365

Query: 347 NLMDDFLEM-ERLAALPD-------------TESRSFCVEV--------GPASDQPNADE 384
               ++ +M +RL+  P               +     V V             QP    
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 385 SSI---------KAELEVLIHR-----------------------------------TAE 400
            SI         K E E  +HR                                     E
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 401 LEEELENMRAEKSELEMDLKESQRRLE---TSQNQLKEAELKLEELETQLAFANKSKQAV 457
             E +   R     + +D +  ++++    T+ N        L++L+    +   +    
Sbjct: 486 HPERMTLFR----MVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541

Query: 458 EVEMKAAI-----AARGVAESK-LSVVEAEMKTQLALANKSKQAAEEEVKSAK 504
           E  + A +         +  SK   ++      ++AL  + +   EE  K  +
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLL------RIALMAEDEAIFEEAHKQVQ 588

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 59.1 bits (143), Expect = 4e-09
 Identities = 39/217 (17%), Positives = 89/217 (41%), Gaps = 13/217 (5%)

Query: 400  ELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEV 459
            +   ++  +  EK +    L+E Q  L     +L++ E ++++L+  LA      +  E+
Sbjct: 1899 DFINQVVLLINEKRD---QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQ-----KNREL 1950

Query: 460  EMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEA 519
            ++K   A + + +       AE+K     A + +   +   K    +K  A + L   E 
Sbjct: 1951 DVKNEQANQKLKQMVQDQQAAEIKQ--KDARELQVQLDVRNKEIAVQKVKAYADLEKAEP 2008

Query: 520  EMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEVKLQYLAGSNQ 579
                LR +V  LE+   + +   +E +A     +  ++  K+E         Q    S++
Sbjct: 2009 TGP-LREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTESSK 2067

Query: 580  -ELKINQEEELAVA-ASKFAECQKTIASLGRQLRSLV 614
             + K+++   L     S+    ++   +   Q+ ++V
Sbjct: 2068 VKNKVDRSIALLDNLNSERGRWEQQSENFNTQMSTVV 2104

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score = 43.4 bits (102), Expect = 3e-04
 Identities = 23/139 (16%), Positives = 55/139 (39%), Gaps = 15/139 (10%)

Query: 399  AELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE 458
             +L+  L        EL++  +++ ++L+      + AE+K ++       A + +  ++
Sbjct: 1937 KDLQVSLAQK---NRELDVKNEQANQKLKQMVQDQQAAEIKQKD-------ARELQVQLD 1986

Query: 459  VEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVE 518
            V  K     +  A + L   E     +  +        E      K K++   + + A+E
Sbjct: 1987 VRNKEIAVQKVKAYADLEKAEPTGPLREEVE-----QLENAANELKLKQDEIVATITALE 2041

Query: 519  AEMETLRSKVISLEDEVEK 537
              + T + +  +L  E E+
Sbjct: 2042 KSIATYKEEYATLIRETEQ 2060

>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861

 Score = 50.2 bits (119), Expect = 2e-06
 Identities = 32/221 (14%), Positives = 64/221 (28%), Gaps = 7/221 (3%)

Query: 349 MDDFLEMERLAALPDTESRSFCVEVGPASDQPNADESSIKAELEVLIHRTAELEEELENM 408
           M +    +        +   F       S         +       + R+ +L  E+   
Sbjct: 608 MSEDTGPDGTLLPKARDQAVFPQNGLVVSSVDVQSVEPVDQRTRDALQRSVQLAIEITTN 667

Query: 409 RAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAAR 468
             E +      +  Q      + Q    + + E+   +L        AVE    A   A 
Sbjct: 668 SQEAAAKHEAQRLEQEARGRLERQKILDQSEAEKARKELLELEAMSMAVESTGNAKAEAE 727

Query: 469 GVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKV 528
             AE+     E  +      A       E E++  K  +E      RA + E+E  +++ 
Sbjct: 728 SRAEAARIEGEGSVLQAKLKAQALAIETEAELERVKKVREMELIYARA-QLELEVSKAQ- 785

Query: 529 ISLEDEVEKERALSEENIANFQKSKDELSKVKQEIELQHEV 569
                 VE ++    + +                 E+Q ++
Sbjct: 786 --QLANVEAKKF---KEMTEALGPGTIRDLAVAGPEMQVKL 821

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	651
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.16
1c1g_A	284	Tropomyosin; contractIle protein; 7.00A {Sus scrof	98.16
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.19
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	97.05
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	96.84
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	96.56
1go4_E	100	MAD1 (mitotic arrest deficient)-like 1; mitotic sp	95.58
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	95.53
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	95.44
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	95.28
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	94.93
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	94.71
2efr_A	155	General control protein GCN4 and tropomyosin 1 Al;	94.65
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	94.12
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	93.21
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	93.11
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	93.08
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	92.45
2v71_A	189	Nuclear distribution protein NUDE-like 1; developm	92.23
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	90.28
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	90.11
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	89.92
1x79_B	112	RAB GTPase binding effector protein 1; rabaptin5,	87.53
1ic2_A	81	Tropomyosin alpha chain, skeletal muscle; alpha-he	86.17
3o0z_A	168	RHO-associated protein kinase 1; coiled-coil, tran	85.4
3mq9_A	471	Bone marrow stromal antigen 2 fused to maltose-BI	85.19
2fxo_A	129	Myosin heavy chain, cardiac muscle beta isoform; c	84.56
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	82.9
3a7p_A	152	Autophagy protein 16; coiled-coil, coiled coil, cy	81.48
2b9c_A	147	Striated-muscle alpha tropomyosin; alpha-helix, co	80.51
3swk_A	86	Vimentin; cytoskeleton, intermediate filament, alp	80.06
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	80.01

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.16  E-value=0.0048  Score=57.51  Aligned_cols=78  Identities=21%  Similarity=0.350  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAA  464 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~  464 (651)
                      ++.+++.+..++..++.++..++.+...++..+..++..+......+..+...+..++.++..+......++.++..+
T Consensus        11 l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (284)
T 1c1g_A           11 LKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEADVASL   88 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666777777777777777776676666666666666666666666666666666555555554444444333

>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A

Probab=98.16  E-value=0.0046  Score=57.60  Aligned_cols=95  Identities=21%  Similarity=0.236  Sum_probs=54.3

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA  466 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~  466 (651)
                      |+..+..+..++..+...+..+..+...++..+......+......+..+...+..+..++..+......+..++.....
T Consensus         4 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (284)
T 1c1g_A            4 IKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKYSEALKDAQEKLELAEKKATDAEA   83 (284)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44455555556666666666666666666666666666666666666666666666666655555555555555555555


Q ss_pred             hhhhhhhhhhhHHHH
Q 006305          467 ARGVAESKLSVVEAE  481 (651)
Q Consensus       467 ~~~~~e~kl~~lE~E  481 (651)
                      ....+..++..+..+
T Consensus        84 ~~~~~~~~~~~~~~~   98 (284)
T 1c1g_A           84 DVASLNRRIQLFEEE   98 (284)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            555555555444443

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.19  E-value=0.0013  Score=78.25  Aligned_cols=9  Identities=44%  Similarity=0.859  Sum_probs=6.9

Q ss_pred             HHHHHHHHH
Q 006305          247 LAKVEAECL  255 (651)
Q Consensus       247 iakLEaECq  255 (651)
                      ++-|+.||.
T Consensus       537 l~lLdee~~  545 (1184)
T 1i84_S          537 LALLDEECW  545 (1184)
T ss_dssp             HHHHHHTTS
T ss_pred             hhhhhhhhC
Confidence            577888885

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=97.05  E-value=0.00039  Score=82.55  Aligned_cols=35  Identities=29%  Similarity=0.347  Sum_probs=17.1

Q ss_pred             chHHHHHHHHHhHH-------hHHHHHHHHHhhhhHHHhhHH
Q 006305          386 SIKAELEVLIHRTA-------ELEEELENMRAEKSELEMDLK  420 (651)
Q Consensus       386 sl~~Ele~~~~q~~-------eLEeKlEKleaEK~ELEmaL~  420 (651)
                      .++.+++.+..++.       +++.++..++.++.++...|.
T Consensus       861 ~L~~eL~el~~~L~~le~~l~ele~~l~~Le~e~~~l~~~L~  902 (1184)
T 1i84_S          861 AKDEELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQ  902 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555555444       444445555555544444443

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=96.84  E-value=0.23  Score=49.44  Aligned_cols=14  Identities=0%  Similarity=0.100  Sum_probs=8.4

Q ss_pred             hhcHHHHHHHHHHH
Q 006305          540 ALSEENIANFQKSK  553 (651)
Q Consensus       540 ~~s~E~~aKc~~LE  553 (651)
                      .+..+++..|..+-
T Consensus       172 ~i~~~lL~~Yerir  185 (256)
T 3na7_A          172 KTEPKIYSFYERIR  185 (256)
T ss_dssp             TSCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHH
Confidence            34666667766553

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=96.56  E-value=0.45  Score=45.32  Aligned_cols=57  Identities=26%  Similarity=0.395  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHh
Q 006305          495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSK  558 (651)
Q Consensus       495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R  558 (651)
                      .-+++|+.+..+.+..|.|...++.-+..|..-|+-|+.++..++.       +|..+.++|..
T Consensus        74 ~yEeqIk~L~~kLKEAE~RAE~AERsv~kLEk~id~lEd~L~~~Ke-------k~~~i~~eLd~  130 (155)
T 2efr_A           74 KYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSIDDLEDELYAQKL-------KYKAISEEMKQ  130 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Confidence            4567999999999999999999999999999999999999998864       44444444443

>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1

Probab=95.58  E-value=0.026  Score=50.34  Aligned_cols=71  Identities=27%  Similarity=0.357  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhh----------HHHHHhHHhHHhHHHHHHHHHHHHHHHHHh
Q 006305          192 RDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTK----------AAETASKQHLESIKKLAKVEAECLRLKAVV  261 (651)
Q Consensus       192 ~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~----------aAe~asKQhlEsvKKiakLEaECqRLr~l~  261 (651)
                      ..|..++++++.||..|+-++..|.=+|+=|+.--+|+..          =|..|..|+-   +.|.+|.+||.|||..+
T Consensus        15 ~~lr~ei~~Le~E~~rLr~~~~~LE~~Le~~~l~Gd~~~~~TKVlH~~~NPa~~a~~~~~---~~~e~Lq~E~erLr~~v   91 (100)
T 1go4_E           15 DTLRLKVEELEGERSRLEEEKRMLEAQLERRALQGDYDQSRTKVLHMSLNPTSVARQRLR---EDHSQLQAECERLRGLL   91 (100)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSCCCTTTEEEEEESSCHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCccCeeeeecCChHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence            5789999999999999999999999999988887888662          2444544443   77899999999999999


Q ss_pred             hhcC
Q 006305          262 RKAS  265 (651)
Q Consensus       262 rK~l  265 (651)
                      |+--
T Consensus        92 ~~lE   95 (100)
T 1go4_E           92 RAME   95 (100)
T ss_dssp             TTCC
T ss_pred             HHHh
Confidence            8743

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=95.53  E-value=1.7  Score=42.55  Aligned_cols=152  Identities=20%  Similarity=0.262  Sum_probs=79.1

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIA  466 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~  466 (651)
                      ++.....+..+...++..|......=.+||..|   ..+|+.+..+......++..|..+++........+..       
T Consensus        15 wk~~~~~~~q~~~~le~El~EFqesSrELE~EL---E~eL~~~Ek~~~~L~~~~~~L~~E~e~~k~K~~~~~~-------   84 (189)
T 2v71_A           15 WKELSMKYKQSFQEARDELVEFQEGSRELEAEL---EAQLVQAEQRNRDLQADNQRLKYEVEALKEKLEHQYA-------   84 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
Confidence            445555666677777777766555555555544   3345555555555556666666665554444433222       


Q ss_pred             hhhhhhhhhhhHHHHHHH-------------HHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305          467 ARGVAESKLSVVEAEMKT-------------QLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED  533 (651)
Q Consensus       467 ~~~~~e~kl~~lE~Ei~~-------------eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~  533 (651)
                         +..+.++.|+.||..             .|..+|...          ..+.+.+.+-+..++.-.+....++-.|+.
T Consensus        85 ---e~~~~~~~Lq~el~~l~~~~~~l~~~ireLEq~NDdl----------Er~~R~~~~SleD~e~kln~aiEr~alLE~  151 (189)
T 2v71_A           85 ---QSYKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDL----------ERAKRATIMSLEDFEQRLNQAIERNAFLES  151 (189)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH----------HHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence               222334444444332             133333332          234566777788888888899999999999


Q ss_pred             HHHHHHhhcHHHHHHHHHHHHHHHhhHHHHHH
Q 006305          534 EVEKERALSEENIANFQKSKDELSKVKQEIEL  565 (651)
Q Consensus       534 EiekER~~s~E~~aKc~~LEeeL~R~k~~~~~  565 (651)
                      |+. ||.   .....|+-|.+++.-.+.++.+
T Consensus       152 El~-EKe---~l~~~~QRLkdE~rDLk~El~v  179 (189)
T 2v71_A          152 ELD-EKE---SLLVSVQRLKDEARDLRQELAV  179 (189)
T ss_dssp             HHH-HHH---HHHCCC----------------
T ss_pred             HHH-HHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence            998 343   4566777777777776664433

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=95.44  E-value=0.44  Score=41.98  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=30.7

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305          496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (651)
Q Consensus       496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E  534 (651)
                      +.+.|...+.+....+..+..+|+++..|..||.+||++
T Consensus        63 ~ee~L~ea~~kLee~ek~~~~aE~ev~~L~RriqllEEe  101 (101)
T 3u1c_A           63 VLEELHKSEDSLLFAEENAAKAESEVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            344555566666668888999999999999999999863

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=95.28  E-value=3.4  Score=54.55  Aligned_cols=156  Identities=18%  Similarity=0.268  Sum_probs=71.0

Q ss_pred             HHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhh
Q 006305          398 TAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSV  477 (651)
Q Consensus       398 ~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~  477 (651)
                      ...+.+|-..+...+.-++.-|.    +|..+..+..++...|+++|.+|...++.-   +.-+..+..+..+++.+-..
T Consensus      1905 ~~ll~~K~~el~~~~~rl~~GL~----KL~et~~~V~~l~~~L~~~~~~L~~k~~ea---~~~l~~i~~~~~~ae~~k~~ 1977 (3245)
T 3vkg_A         1905 VLLINEKRDQLEEEQLHLNIGLK----KLRDTEAQVKDLQVSLAQKNRELDVKNEQA---NQKLKQMVQDQQAAEIKQKD 1977 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            33444555555555555554443    334444455555555555555544433322   22233333333333322211


Q ss_pred             ---HHHHHHHHHHHHHHhHHHHHHHHHH------HHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHH
Q 006305          478 ---VEAEMKTQLALANKSKQAAEEEVKS------AKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIAN  548 (651)
Q Consensus       478 ---lE~Ei~~eL~la~~s~~~a~eelk~------~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aK  548 (651)
                         .+.++.++-.-++.-+..++.+|..      ..+..+.+|.++..+++++.....++..|++.|.+=+..-++...+
T Consensus      1978 v~~~~~~~~~~~~ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~e 2057 (3245)
T 3vkg_A         1978 ARELQVQLDVRNKEIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRE 2057 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               2223333333334444444444432      1234444555555555555555555555555555555555555666


Q ss_pred             HHHHHHHHHhhH
Q 006305          549 FQKSKDELSKVK  560 (651)
Q Consensus       549 c~~LEeeL~R~k  560 (651)
                      .+.|+.++....
T Consensus      2058 k~~L~~e~~~~~ 2069 (3245)
T 3vkg_A         2058 TEQIKTESSKVK 2069 (3245)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666666655544

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=94.93  E-value=2.4  Score=41.00  Aligned_cols=135  Identities=20%  Similarity=0.284  Sum_probs=85.7

Q ss_pred             hhhhHhhHhHHHHHHHhhcchhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhcchhhHHHHHHH
Q 006305           58 VNDSVKTLTEKLSAALLNVSAKEDLVKQHAKVAEEAVSGWEKAENELSTLKQQLKAASQKNSALENRVSHLDGALKECVR  137 (651)
Q Consensus        58 ~~~~vk~LneKLs~al~~~~~Kd~lvkqhaKvaeEAv~GWEKAe~E~~slK~qLe~~~~~~~~~edrvshLD~ALKECmr  137 (651)
                      +++++..+|+||-+-                  -|++.-|-|..+|+..-.++++..   +..+.++++.|..+--.-=+
T Consensus        11 LekQL~E~n~kLk~E------------------sE~~~rlkK~~tEl~k~~~~~E~~---~rELq~~~~~L~~~k~~Lek   69 (168)
T 3o0z_A           11 LQKQLEEANDLLRTE------------------SDTAVRLRKSHTEMSKSISQLESL---NRELQERNRILENSKSQTDK   69 (168)
T ss_dssp             THHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHh------------------HHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            678899999998654                  577788888888887777777643   45566777777666443333


Q ss_pred             HHHHh--hHHHHHHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhhhHhh-h-hhhHHHHHHHHHHHHhhhhhh----
Q 006305          138 QLRQA--REEQEQRIQETVSKQNLEWESKKSELESKLVDLQKKLQTAKSEAA-A-SADRDLCSKLEAAEKQNSALK----  209 (651)
Q Consensus       138 QLr~~--rEEqEqki~dav~kks~e~e~~~~elE~kl~e~~~~L~~a~~e~~-a-~~~~~L~~rLes~EKen~sLk----  209 (651)
                      ++-.+  .=++|++-.---       ..+..+|+.++.-|...|...+.--. + .....|..|+-.+||+.+++-    
T Consensus        70 e~~~LQa~L~qEr~~r~q~-------se~~~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~eid~~  142 (168)
T 3o0z_A           70 DYYQLQAILEAERRDRGHD-------SEMIGDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNLEIDLN  142 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            33322  222232222111       22335566666666666665543211 1 223679999999999999999    


Q ss_pred             HHHHHhhhhhh
Q 006305          210 LELLSLVKELE  220 (651)
Q Consensus       210 yE~~~l~kELe  220 (651)
                      |+|.+++--++
T Consensus       143 ~eLKalQ~~~e  153 (168)
T 3o0z_A          143 YKLKSLQQRLE  153 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88988876554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=94.71  E-value=0.8  Score=40.08  Aligned_cols=39  Identities=36%  Similarity=0.469  Sum_probs=29.8

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 006305          496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDE  534 (651)
Q Consensus       496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~E  534 (651)
                      +.+.|...+.++...+..+..+|+++..|..+|-+||++
T Consensus        63 ~~e~l~~a~~kLe~~ek~~~~AE~evasLnRriqllEEe  101 (101)
T 3u59_A           63 YSESVKEAQEKLEQAEKKATDAEAEVASLNRRIQLVEEE  101 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence            344555555666667888889999999999999998753

>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing cluster, hydrophobic core, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A

Probab=94.65  E-value=3.1  Score=39.55  Aligned_cols=43  Identities=33%  Similarity=0.414  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          494 QAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVE  536 (651)
Q Consensus       494 ~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Eie  536 (651)
                      .-++..|.+.+.+|..+...|..+-.++..+..++.-|+++|.
T Consensus       108 d~lEd~L~~~Kek~~~i~~eLd~tl~el~~~~~~~~~~~~~~~  150 (155)
T 2efr_A          108 DDLEDELYAQKLKYKAISEEMKQLEDKVEELLSKNYHLENEVA  150 (155)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            4566777778888888888888888899998888888888875

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=94.12  E-value=5.1  Score=39.82  Aligned_cols=43  Identities=14%  Similarity=0.252  Sum_probs=17.9

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 006305          484 TQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRS  526 (651)
Q Consensus       484 ~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~  526 (651)
                      +++..+..-...++.+|..+.+....++..+..++..+..+..
T Consensus        97 kEie~~~~~i~~lE~eile~~e~ie~~~~~l~~~~~~l~~~~~  139 (256)
T 3na7_A           97 IEEDIAKERSNQANREIENLQNEIKRKSEKQEDLKKEMLELEK  139 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444444444444444333333333

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=93.21  E-value=1  Score=39.45  Aligned_cols=73  Identities=19%  Similarity=0.289  Sum_probs=49.3

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVE  458 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E  458 (651)
                      .|+.|.+.++-+...++.+++..+.....++-.+.-.+..+..+...+-.++..|.+.+..|..+.+....+|
T Consensus        13 ~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~ek~~~~AE   85 (101)
T 3u59_A           13 MLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAEKKATDAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666777777777777777777777777777777767677766666666666666666666665555444333

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=93.11  E-value=1.7  Score=38.14  Aligned_cols=64  Identities=20%  Similarity=0.329  Sum_probs=30.5

Q ss_pred             hHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006305          387 IKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFA  450 (651)
Q Consensus       387 l~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~a  450 (651)
                      |+.|.+.++-+...++.+++..+.....++-.+...+..+..+...|-.++..|.+.+..|..+
T Consensus        14 lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~   77 (101)
T 3u1c_A           14 LKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFA   77 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555554444444444444444444444444444444443333

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=93.08  E-value=4.7  Score=53.31  Aligned_cols=143  Identities=15%  Similarity=0.149  Sum_probs=68.3

Q ss_pred             HHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--
Q 006305          390 ELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAA--  467 (651)
Q Consensus       390 Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~--  467 (651)
                      |+...+.++.-=-.||..-.....+|...|...+-+|+...   .+++..|.++..+-..|++.+..++.....+...  
T Consensus      1914 el~~~~~rl~~GL~KL~et~~~V~~l~~~L~~~~~~L~~k~---~ea~~~l~~i~~~~~~ae~~k~~v~~~~~~~~~~~~ 1990 (3245)
T 3vkg_A         1914 QLEEEQLHLNIGLKKLRDTEAQVKDLQVSLAQKNRELDVKN---EQANQKLKQMVQDQQAAEIKQKDARELQVQLDVRNK 1990 (3245)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444333334444455555666666666666665543   3677778888887777777766554333222222  


Q ss_pred             -----hhhhhhhhhhHH--HHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 006305          468 -----RGVAESKLSVVE--AEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEV  535 (651)
Q Consensus       468 -----~~~~e~kl~~lE--~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~Ei  535 (651)
                           +.+++..|..++  .=.+.+|+.|+.....|..+|....+....++.++..++++...+..+...|+.++
T Consensus      1991 ei~~~k~~~e~dL~~A~Pa~Pkr~~l~~ae~~l~~~~~~L~~~~~~L~~le~~l~~L~~~~~~~~~ek~~L~~e~ 2065 (3245)
T 3vkg_A         1991 EIAVQKVKAYADLEKAEPTGPLREEVEQLENAANELKLKQDEIVATITALEKSIATYKEEYATLIRETEQIKTES 2065 (3245)
T ss_dssp             HHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 222222222111  00223344444444444444444444444444444444444444444444444443

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=92.45  E-value=6.1  Score=35.84  Aligned_cols=29  Identities=31%  Similarity=0.429  Sum_probs=14.8

Q ss_pred             HHHHHHHhHHhHHHHHHHHHhhhhHHHhh
Q 006305          390 ELEVLIHRTAELEEELENMRAEKSELEMD  418 (651)
Q Consensus       390 Ele~~~~q~~eLEeKlEKleaEK~ELEma  418 (651)
                      |+..+...+..|.+++++.+..+.+|+..
T Consensus        14 E~~~~~eel~~lke~l~k~e~~r~ele~~   42 (129)
T 2fxo_A           14 EMASMKEEFTRLKEALEKSEARRKELEEK   42 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555555555555555555544443

>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}

Probab=92.23  E-value=9.3  Score=37.45  Aligned_cols=102  Identities=20%  Similarity=0.249  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHH
Q 006305          430 QNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEA  509 (651)
Q Consensus       430 ~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~  509 (651)
                      +.......+.+.+|+.+|+.-..|-..                     ||.||.++|.-+.+-+..+...+..+..-+..
T Consensus        16 k~~~~~~~q~~~~le~El~EFqesSrE---------------------LE~ELE~eL~~~Ek~~~~L~~~~~~L~~E~e~   74 (189)
T 2v71_A           16 KELSMKYKQSFQEARDELVEFQEGSRE---------------------LEAELEAQLVQAEQRNRDLQADNQRLKYEVEA   74 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444555555555555554444432                     45566666666666555432222222211222


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHH
Q 006305          510 AESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDE  555 (651)
Q Consensus       510 lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEee  555 (651)
                      +-.++.....|..+   .|..|+.+|..=|.....+..++++||-.
T Consensus        75 ~k~K~~~~~~e~~~---~~~~Lq~el~~l~~~~~~l~~~ireLEq~  117 (189)
T 2v71_A           75 LKEKLEHQYAQSYK---QVSVLEDDLSQTRAIKEQLHKYVRELEQA  117 (189)
T ss_dssp             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22222222222111   35566666666666677777777777744

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=90.28  E-value=5.2  Score=37.55  Aligned_cols=94  Identities=26%  Similarity=0.360  Sum_probs=53.7

Q ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHhHH
Q 006305          415 LEMDLKESQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAEMKTQLALANKSKQ  494 (651)
Q Consensus       415 LEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~  494 (651)
                      .+.+..++.+......++-..-+.++..|..||..|...-..+.-++       .++.+||.+++               
T Consensus        29 aek~adE~eR~~k~lE~r~~~deEr~~~lE~qLkeak~~aeeadrKy-------eE~~RKl~~~E---------------   86 (147)
T 2b9c_A           29 AEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKY-------EEVARKLVIIE---------------   86 (147)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH---------------
T ss_pred             HHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHHHHHhH-------HHHHHHHHHHH---------------
Confidence            34444455555666666666777777777777665544433332222       22344443333               


Q ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305          495 AAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLED  533 (651)
Q Consensus       495 ~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~  533 (651)
                         ..|.++.+.....|+++..++.++..+.+.+.+|+.
T Consensus        87 ---~dLeraeeRae~aE~k~~eLEeeL~~~~~nlKsLE~  122 (147)
T 2b9c_A           87 ---SDLERAEERAELSEGKCAELEEELKTVTNNLKSLED  122 (147)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence               333444455555777777777777777777777763

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=90.11  E-value=4.3  Score=48.47  Aligned_cols=10  Identities=30%  Similarity=0.581  Sum_probs=7.3

Q ss_pred             HHHHHHHHHH
Q 006305          247 LAKVEAECLR  256 (651)
Q Consensus       247 iakLEaECqR  256 (651)
                      ++-|+.||..
T Consensus       506 l~lLdee~~~  515 (1080)
T 2dfs_A          506 LDLLDEECKM  515 (1080)
T ss_dssp             HHHHHHHTTS
T ss_pred             eeeccccccC
Confidence            5778888853

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=89.92  E-value=8.9  Score=45.83  Aligned_cols=25  Identities=12%  Similarity=0.198  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhHH
Q 006305          509 AAESRLRAVEAEMETLRSKVISLED  533 (651)
Q Consensus       509 ~lEs~l~~~eaE~~~L~~Ki~~Le~  533 (651)
                      .|+.++..++.|...|...++.|+.
T Consensus      1020 ~L~~kv~~L~~e~~~L~qq~~~l~~ 1044 (1080)
T 2dfs_A         1020 ETEQLVSELKEQNTLLKTEKEELNR 1044 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445555555555555555555553

>1x79_B RAB GTPase binding effector protein 1; rabaptin5, GGA protein, GAT domain, intracellular trafficking, protein transport; 2.41A {Homo sapiens} SCOP: h.1.27.2

Probab=87.53  E-value=8.6  Score=34.94  Aligned_cols=98  Identities=22%  Similarity=0.325  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 006305          388 KAELEVLIHRTAELEEELENMRAEKSELEMDLKE----SQRRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKA  463 (651)
Q Consensus       388 ~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e----~q~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a  463 (651)
                      +...+.+......|.+.|+++.+++.+|+-.+..    +..+......+...+|+.|.+||.-+..+             
T Consensus         5 ~~~~~~lq~~~~ql~~qL~k~~~~r~~Le~~w~~k~E~~k~qV~~L~~~~q~sE~~L~~Lqq~fsq~-------------   71 (112)
T 1x79_B            5 RDQVKKLQLMLRQANDQLEKTMKDKQELEDFIKQSSEDSSHQISALVLRAQASEILLEELQQGLSQA-------------   71 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------
Confidence            4566778888899999999999999999998875    55677777888888888888887663222             


Q ss_pred             HHHhhhhhhhhhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 006305          464 AIAARGVAESKLSVVEAEMKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSK  527 (651)
Q Consensus       464 ~~~~~~~~e~kl~~lE~Ei~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~K  527 (651)
                                                   +..+..+|.-+..+++.+=.+|..++.|...|..|
T Consensus        72 -----------------------------q~~vq~qL~~Lt~~Re~V~~eL~rLQ~eNd~L~Gk  106 (112)
T 1x79_B           72 -----------------------------KRDVQEQMAVLMQSREQVSEELVRLQKDNDSLQGK  106 (112)
T ss_dssp             -----------------------------HHHHHHHHHHHHHHHHHHHTC--------------
T ss_pred             -----------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhh
Confidence                                         23344555666666667777777777777777655

>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1

Probab=86.17  E-value=7.6  Score=32.63  Aligned_cols=66  Identities=20%  Similarity=0.347  Sum_probs=37.3

Q ss_pred             chHHHHHHHHHhHHhHHHHHHHHHhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 006305          386 SIKAELEVLIHRTAELEEELENMRAEKSELEMDLKESQRRLETSQNQLKEAELKLEELETQLAFAN  451 (651)
Q Consensus       386 sl~~Ele~~~~q~~eLEeKlEKleaEK~ELEmaL~e~q~~Le~s~~~L~EaE~kl~ELQ~qL~~an  451 (651)
                      .|+.|++.+.-+...++.+++..+.....++-.+...+..+..+...|..++..|...+..|..+.
T Consensus        10 ~lk~e~d~a~~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeae   75 (81)
T 1ic2_A           10 MLKLDKENALDRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELAD   75 (81)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556666666666666665555555555555555555555555555555555555555554443

>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}

Probab=85.40  E-value=28  Score=33.66  Aligned_cols=24  Identities=21%  Similarity=0.207  Sum_probs=14.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhHH
Q 006305          510 AESRLRAVEAEMETLRSKVISLED  533 (651)
Q Consensus       510 lEs~l~~~eaE~~~L~~Ki~~Le~  533 (651)
                      +-.++..++++.+.|..+|..||.
T Consensus       109 ~k~~~~k~~~e~r~L~Ekl~~lEK  132 (168)
T 3o0z_A          109 LKHNLEKVEGERKEAQDMLNHSEK  132 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555566667777777766543

>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}

Probab=85.19  E-value=23  Score=37.29  Aligned_cols=107  Identities=26%  Similarity=0.348  Sum_probs=56.9

Q ss_pred             HHHHHhhhhHHHhhHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 006305          405 LENMRAEKSELEMDLKESQRRLETSQNQL---KEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE  481 (651)
Q Consensus       405 lEKleaEK~ELEmaL~e~q~~Le~s~~~L---~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E  481 (651)
                      +.++-.-+...+.+|..++.+++..-.++   .++.+.-..||.+|+.+++....++.+       +.+.-.+|.-|.+ 
T Consensus       361 ~~~vl~G~~t~eeal~~~~~~i~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~-  432 (471)
T 3mq9_A          361 VINAASGRQTVDEALKDAQTRITAARDGLRAVMEARNVTHLLQQELTEAQKGFQDVEAQ-------AATANHTVMALMA-  432 (471)
T ss_dssp             HHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH-
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhhHHHHHhhhHHHHHHHHHHHHhhhHHHHHHH-------hhhcchhHHHHHH-
Confidence            33333333344555555444443332222   245666777888888888777554422       2222222211111 


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 006305          482 MKTQLALANKSKQAAEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKER  539 (651)
Q Consensus       482 i~~eL~la~~s~~~a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER  539 (651)
                                          ++..+...-+.+++++|.||.+|..++..++.+|+.=|
T Consensus       433 --------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  470 (471)
T 3mq9_A          433 --------------------SLDAEKAQGQKKVEELEGEITTLNHKLQDASAEVERLR  470 (471)
T ss_dssp             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence                                11122222345777888888888888888888887544

>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A

Probab=84.56  E-value=23  Score=32.04  Aligned_cols=51  Identities=27%  Similarity=0.333  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhhHH
Q 006305          511 ESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKVKQ  561 (651)
Q Consensus       511 Es~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~k~  561 (651)
                      |.+...+.+.-..|..+|.-|+..++.+-....++.+..++|+.+++-.+.
T Consensus        68 EE~~~~L~~~k~eLe~~l~el~~rleeeee~~~~L~~~kkkle~e~~~Lk~  118 (129)
T 2fxo_A           68 EERCDQLIKNKIQLEAKVKEMNKRLEDEEEMNAELTAKKRKLEDECSELKR  118 (129)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333333333444455555555666666666777777777777766664

>3a7p_A Autophagy protein 16; coiled-coil, coiled coil, cytoplasmic vesicle, protein transport, transport, vacuole; 2.80A {Saccharomyces cerevisiae}

Probab=81.48  E-value=9.6  Score=36.32  Aligned_cols=98  Identities=18%  Similarity=0.198  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHHHHHHHHhhhHhhhhhhHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHHhhhhhhhHHHHHhHHhHHhH
Q 006305          165 KSELESKLVDLQKKLQTAKSEAAASADRDLCSKLEAAEKQNSALKLELLSLVKELELRIVERDLSTKAAETASKQHLESI  244 (651)
Q Consensus       165 ~~elE~kl~e~~~~L~~a~~e~~a~~~~~L~~rLes~EKen~sLkyE~~~l~kELeIR~~Ere~s~~aAe~asKQhlEsv  244 (651)
                      |..+|.++.++....-.+...|.++.+..+...+..+++++..|+-++..+..+|.-++---+.=. ..=.+-.-|+..+
T Consensus        37 Rd~~E~~~~~l~~e~~~~~~~~~vs~~~~~~~~I~~L~~El~~l~~ki~dLeeel~eK~K~~e~l~-DEl~aLqlq~n~l  115 (152)
T 3a7p_A           37 RNDKEAHLNELFQDNSGAIGGNIVSHDDALLNTLAILQKELKSKEQEIRRLKEVIALKNKNTERLN-AALISGTIENNVL  115 (152)
T ss_dssp             --------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHhhccCCCcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            466788888887776655555555555566666777777777776666666666555543333222 2223334444444


Q ss_pred             -HHHHHHHHHHHHH--HHHhhh
Q 006305          245 -KKLAKVEAECLRL--KAVVRK  263 (651)
Q Consensus       245 -KKiakLEaECqRL--r~l~rK  263 (651)
                       .|+.+|++|=+.|  |-|.||
T Consensus       116 E~kl~kLq~EN~~LV~RWM~rk  137 (152)
T 3a7p_A          116 QQKLSDLKKEHSQLVARWLKKT  137 (152)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence             7899999998766  445444

>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1

Probab=80.51  E-value=38  Score=31.70  Aligned_cols=51  Identities=20%  Similarity=0.277  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhhhhhhhhhhHHHH
Q 006305          424 RRLETSQNQLKEAELKLEELETQLAFANKSKQAVEVEMKAAIAARGVAESKLSVVEAE  481 (651)
Q Consensus       424 ~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk~~~E~el~a~~~~~~~~e~kl~~lE~E  481 (651)
                      .+|...+....+++.+..+....|..+......+       +.....+++++.-|+.+
T Consensus        59 ~qLkeak~~aeeadrKyeE~~RKl~~~E~dLera-------eeRae~aE~k~~eLEee  109 (147)
T 2b9c_A           59 IQLKEAKHIAEDADRKYEEVARKLVIIESDLERA-------EERAELSEGKCAELEEE  109 (147)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHH
Confidence            3444445555555666666666555544444443       33444445555333333

>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens}

Probab=80.06  E-value=9.9  Score=32.60  Aligned_cols=55  Identities=20%  Similarity=0.350  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHhhhhHHHhhHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 006305          400 ELEEELENMRAEKSELEMDLKESQ-------RRLETSQNQLKEAELKLEELETQLAFANKSK  454 (651)
Q Consensus       400 eLEeKlEKleaEK~ELEmaL~e~q-------~~Le~s~~~L~EaE~kl~ELQ~qL~~aneSk  454 (651)
                      +|..+++.+..++.-++..+..++       ..|+.=...-..+|+.+.-|..-++.+.-.+
T Consensus         4 eLr~qi~~l~~e~~~l~~e~dn~~~~~edfk~KyE~E~~~R~~~E~d~~~LrkdvD~a~l~r   65 (86)
T 3swk_A            4 ELRRQVDQLTNDKARVEVERDNLAEDIMRLREKLQEEMLQREEAENTLQSFRQDVDNASLAR   65 (86)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444455555555555555554444       4444444444446666666666655555544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=80.01  E-value=24  Score=37.98  Aligned_cols=57  Identities=16%  Similarity=0.219  Sum_probs=34.2

Q ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhhcHHHHHHHHHHHHHHHhh
Q 006305          496 AEEEVKSAKSKKEAAESRLRAVEAEMETLRSKVISLEDEVEKERALSEENIANFQKSKDELSKV  559 (651)
Q Consensus       496 a~eelk~~~~k~~~lEs~l~~~eaE~~~L~~Ki~~Le~EiekER~~s~E~~aKc~~LEeeL~R~  559 (651)
                      .++++....+.|+.++.+...++..++..+.++..|..|+..-       .++.+.|++++.+.
T Consensus       528 ~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~-------~~~~~~l~~~~~~~  584 (597)
T 3oja_B          528 RRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLK-------RQKVKQLEAKKNRN  584 (597)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHTTC--
T ss_pred             HHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHH-------HHHHHHHHHHhcCC
Confidence            3344445556666677777777777777777766666655443       45666666666654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00