Citrus Sinensis ID: 006319
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | 2.2.26 [Sep-21-2011] | |||||||
| P42285 | 1042 | Superkiller viralicidic a | yes | no | 0.976 | 0.609 | 0.519 | 0.0 | |
| Q9CZU3 | 1040 | Superkiller viralicidic a | yes | no | 0.976 | 0.610 | 0.515 | 0.0 | |
| O14232 | 1117 | ATP-dependent RNA helicas | yes | no | 0.978 | 0.569 | 0.472 | 1e-162 | |
| P47047 | 1073 | ATP-dependent RNA helicas | yes | no | 0.972 | 0.589 | 0.448 | 1e-152 | |
| Q23223 | 1026 | mRNA transport homolog 4 | yes | no | 0.961 | 0.609 | 0.415 | 1e-139 | |
| O13799 | 1030 | Uncharacterized helicase | no | no | 0.973 | 0.614 | 0.396 | 1e-130 | |
| Q15477 | 1246 | Helicase SKI2W OS=Homo sa | no | no | 0.961 | 0.501 | 0.313 | 4e-81 | |
| P35207 | 1287 | Antiviral helicase SKI2 O | no | no | 0.389 | 0.196 | 0.392 | 4e-46 | |
| O59801 | 1213 | Putative ATP-dependent RN | no | no | 0.361 | 0.193 | 0.414 | 7e-45 | |
| Q10701 | 906 | Probable helicase HelY OS | yes | no | 0.313 | 0.225 | 0.363 | 2e-32 |
| >sp|P42285|SK2L2_HUMAN Superkiller viralicidic activity 2-like 2 OS=Homo sapiens GN=SKIV2L2 PE=1 SV=3 | Back alignment and function desciption |
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Score = 661 bits (1706), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 339/652 (51%), Positives = 446/652 (68%), Gaps = 17/652 (2%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M KLD D+EK +E +F +A+D LSD+DKKLPQV ++LPLLKRGIG+HH GLLPILKE
Sbjct: 406 MTKLDFNTDEEKKMVEEVFSNAIDCLSDEDKKLPQVEHVLPLLKRGIGIHHGGLLPILKE 465
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
IEILF EGLIK LFATETF++G+NMPA+TV+FTN RKFDG FRWISSGEYIQMSGRAG
Sbjct: 466 TIEILFSEGLIKALFATETFAMGINMPARTVLFTNARKFDGKDFRWISSGEYIQMSGRAG 525
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI ILMVD+KM P+ K +LKGSAD LNSAFHL+YNM+LN +R EE +PE +L
Sbjct: 526 RRGMDDRGIVILMVDEKMSPTIGKQLLKGSADPLNSAFHLTYNMVLNLLRVEEINPEYML 585
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
SFYQFQ AIP + ++ K EE+ + +VI E+S+ YY + QQ L K++ + +
Sbjct: 586 EKSFYQFQHYRAIPGVVEKVKNSEEQYNKIVIPNEESVVIYYKIRQQLAKLGKEIEEYIH 645
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
PKYCLPFLQPGR V ++ GDD WGVV+ F K V N
Sbjct: 646 KPKYCLPFLQPGRLVKVK-NEGDD-----------FGWGVVVNFSKKSNV---KPNSGEL 690
Query: 301 DSNYTVNILTRCVV-SKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDL 359
D Y V +L RC S + + K E GE VV V + + +SS RL +PKDL
Sbjct: 691 DPLYVVEVLLRCSKESLKNSATEAAKPAKPDEKGEMQVVPVLVHLLSAISSVRLYIPKDL 750
Query: 360 LPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALESLFDKHEIS 418
P+ R+++LKS E R G+P LDP +MGI+ +K+++++EA E H +
Sbjct: 751 RPVDNRQSVLKSIQEVQKRFPDGIPLLDPIDDMGIQDQGLKKVIQKVEAFEHRMYSHPLH 810
Query: 419 KSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVV 478
P +E + K ++ IKS KR+++ + + DELK RKRVLRRLG+ATS DV+
Sbjct: 811 NDPNLETVYTLCEKKAQIAIDIKSAKRELKKARTVLQMDELKCRKRVLRRLGFATSSDVI 870
Query: 479 ELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELEL 538
E+KG+VACEISSA+EL LTE++FNG+ D+ E+ +LLSCFV+QE + K E+L
Sbjct: 871 EMKGRVACEISSADELLLTEMMFNGLFNDLSAEQATALLSCFVFQENSSEMPKLTEQLAG 930
Query: 539 LFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFE 598
Q+Q+ A+R+AKV E K++ID E +++SF+P +M+ VY WA G+ F I ++T VFE
Sbjct: 931 PLRQMQECAKRIAKVSAEAKLEIDEETYLSSFKPHLMDVVYTWATGATFAHICKMTDVFE 990
Query: 599 GSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
GS+IR +RRLEE+L+Q+ AAK+IG TELE KF E ++KIKRDIVFAASLYL
Sbjct: 991 GSIIRCMRRLEELLRQMCQAAKAIGNTELENKFAEGITKIKRDIVFAASLYL 1042
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May be involved in pre-mRNA splicing. Associated with the RNA exosome complex and involved in the 3'processing of the 7S pre-RNA to the mature 5.8S rRNA. Homo sapiens (taxid: 9606) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|Q9CZU3|SK2L2_MOUSE Superkiller viralicidic activity 2-like 2 OS=Mus musculus GN=Skiv2l2 PE=2 SV=1 | Back alignment and function description |
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| >sp|O14232|MTR4_SCHPO ATP-dependent RNA helicase mtr4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mtr4 PE=1 SV=1 | Back alignment and function description |
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| >sp|P47047|MTR4_YEAST ATP-dependent RNA helicase DOB1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MTR4 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q23223|MTR4_CAEEL mRNA transport homolog 4 OS=Caenorhabditis elegans GN=mtr-4 PE=3 SV=1 | Back alignment and function description |
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| >sp|O13799|YE02_SCHPO Uncharacterized helicase C17H9.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC17H9.02 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q15477|SKIV2_HUMAN Helicase SKI2W OS=Homo sapiens GN=SKIV2L PE=1 SV=3 | Back alignment and function description |
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| >sp|P35207|SKI2_YEAST Antiviral helicase SKI2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SKI2 PE=1 SV=2 | Back alignment and function description |
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| >sp|O59801|SKI2_SCHPO Putative ATP-dependent RNA helicase C550.03c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC550.03c PE=3 SV=1 | Back alignment and function description |
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| >sp|Q10701|HELY_MYCTU Probable helicase HelY OS=Mycobacterium tuberculosis GN=helY PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | ||||||
| 255573838 | 991 | helicase, putative [Ricinus communis] gi | 0.998 | 0.654 | 0.864 | 0.0 | |
| 224129500 | 1012 | predicted protein [Populus trichocarpa] | 0.998 | 0.641 | 0.836 | 0.0 | |
| 225435997 | 994 | PREDICTED: superkiller viralicidic activ | 0.996 | 0.651 | 0.838 | 0.0 | |
| 449505096 | 993 | PREDICTED: LOW QUALITY PROTEIN: superkil | 0.998 | 0.653 | 0.826 | 0.0 | |
| 449445443 | 994 | PREDICTED: superkiller viralicidic activ | 0.998 | 0.652 | 0.826 | 0.0 | |
| 356527455 | 981 | PREDICTED: superkiller viralicidic activ | 0.998 | 0.661 | 0.811 | 0.0 | |
| 297837559 | 988 | hypothetical protein ARALYDRAFT_893587 [ | 0.998 | 0.656 | 0.796 | 0.0 | |
| 357507885 | 983 | Helicase, putative [Medicago truncatula] | 0.998 | 0.660 | 0.789 | 0.0 | |
| 15218905 | 988 | RNA helicase [Arabidopsis thaliana] gi|5 | 0.998 | 0.656 | 0.795 | 0.0 | |
| 77554317 | 776 | Superkiller viralicidic activity 2-like | 0.990 | 0.829 | 0.779 | 0.0 |
| >gi|255573838|ref|XP_002527838.1| helicase, putative [Ricinus communis] gi|223532762|gb|EEF34541.1| helicase, putative [Ricinus communis] | Back alignment and taxonomy information |
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Score = 1160 bits (3001), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 562/650 (86%), Positives = 610/650 (93%), Gaps = 1/650 (0%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
MAK+DL EDDEKVNIETIFWSAMDMLSDDDKKLPQVSN+LPLLKRGIGVHHSGLLPILKE
Sbjct: 343 MAKMDLNEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKE 402
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
VIEILFQEGLIKCLFATETFSIGLNMPAKTVVF+NVRKFDGDKFRW+SSGEYIQMSGRAG
Sbjct: 403 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFSNVRKFDGDKFRWLSSGEYIQMSGRAG 462
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRGIDERGICILMVD+K+EPSTAKMMLKGSADSLNSAFHLSYNMLLNQ+RCE+G PENLL
Sbjct: 463 RRGIDERGICILMVDEKLEPSTAKMMLKGSADSLNSAFHLSYNMLLNQMRCEDGDPENLL 522
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
RNSFYQFQAD AIPDLEKQ KVLE+ER+SM+IEEEDSLKNYY+L+QQYKSLKKD RDIVF
Sbjct: 523 RNSFYQFQADRAIPDLEKQVKVLEDERNSMIIEEEDSLKNYYDLIQQYKSLKKDARDIVF 582
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
SPKYCLPFLQPGR VCI+C+ D+NSPSFS EDH VTWGVVI F++VK EDDA++KPE
Sbjct: 583 SPKYCLPFLQPGRIVCIQCSGVDENSPSFSVEDH-VTWGVVISFDRVKSFSEDDASRKPE 641
Query: 301 DSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLL 360
DSNYTV++LTRCVVS+DG +K+ KIVPLKE GEPLVVS+PIS+I LSSARL M KDLL
Sbjct: 642 DSNYTVDVLTRCVVSRDGVAEKSFKIVPLKEPGEPLVVSIPISEITSLSSARLYMAKDLL 701
Query: 361 PLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKS 420
PL+ REN LK EFL+R +GLPLDPEA+M I+SSSY+K V RIEALE+LF+KHEI+KS
Sbjct: 702 PLEVRENTLKQVIEFLSRKPTGLPLDPEADMKIKSSSYKKAVWRIEALENLFEKHEIAKS 761
Query: 421 PLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVEL 480
PLI+QKLKVLH KQELTAKIKS+K+ +RSST LAFKDELKARKRVLRRLGY TSDDV+EL
Sbjct: 762 PLIDQKLKVLHKKQELTAKIKSVKKTLRSSTALAFKDELKARKRVLRRLGYVTSDDVLEL 821
Query: 481 KGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLF 540
KGKVACEISSA+ELTLTEL+FNGVLKD+KVEEMVSLLSCFVWQEKLQDA KPREEL++LF
Sbjct: 822 KGKVACEISSADELTLTELMFNGVLKDIKVEEMVSLLSCFVWQEKLQDAGKPREELDMLF 881
Query: 541 TQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGS 600
TQLQDTARRVAK+QLECKVQIDVE FV+SFRPDIMEAVYAWAKGSKFYEIMEIT VFEGS
Sbjct: 882 TQLQDTARRVAKLQLECKVQIDVEDFVSSFRPDIMEAVYAWAKGSKFYEIMEITQVFEGS 941
Query: 601 LIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
LIRAIRRLEEVLQQLI AAKSIGETELEAKFEEAVSKIKRDIVFAASLYL
Sbjct: 942 LIRAIRRLEEVLQQLIQAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 991
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129500|ref|XP_002328732.1| predicted protein [Populus trichocarpa] gi|222839030|gb|EEE77381.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|225435997|ref|XP_002273102.1| PREDICTED: superkiller viralicidic activity 2-like 2 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|449505096|ref|XP_004162375.1| PREDICTED: LOW QUALITY PROTEIN: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449445443|ref|XP_004140482.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|356527455|ref|XP_003532326.1| PREDICTED: superkiller viralicidic activity 2-like 2-like [Glycine max] | Back alignment and taxonomy information |
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| >gi|297837559|ref|XP_002886661.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp. lyrata] gi|297332502|gb|EFH62920.1| hypothetical protein ARALYDRAFT_893587 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|357507885|ref|XP_003624231.1| Helicase, putative [Medicago truncatula] gi|355499246|gb|AES80449.1| Helicase, putative [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|15218905|ref|NP_176185.1| RNA helicase [Arabidopsis thaliana] gi|5080810|gb|AAD39319.1|AC007258_8 Very similar to helicases [Arabidopsis thaliana] gi|51971869|dbj|BAD44599.1| hypothetical protein [Arabidopsis thaliana] gi|332195495|gb|AEE33616.1| RNA helicase [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|77554317|gb|ABA97113.1| Superkiller viralicidic activity 2-like 2, putative, expressed [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 650 | ||||||
| TAIR|locus:2026001 | 988 | MTR4 "homolog of yeast MTR4" [ | 0.998 | 0.656 | 0.795 | 5.3e-278 | |
| UNIPROTKB|E2RCI5 | 1042 | SKIV2L2 "Uncharacterized prote | 0.976 | 0.609 | 0.524 | 4.9e-172 | |
| UNIPROTKB|F5H7E2 | 941 | SKIV2L2 "Superkiller viralicid | 0.976 | 0.674 | 0.521 | 1.7e-171 | |
| UNIPROTKB|P42285 | 1042 | SKIV2L2 "Superkiller viralicid | 0.976 | 0.609 | 0.521 | 1.7e-171 | |
| UNIPROTKB|F1SLL6 | 1046 | SKIV2L2 "Uncharacterized prote | 0.976 | 0.607 | 0.520 | 2.4e-170 | |
| MGI|MGI:1919448 | 1040 | Skiv2l2 "superkiller viralicid | 0.976 | 0.610 | 0.516 | 4e-170 | |
| ZFIN|ZDB-GENE-040426-2854 | 1034 | skiv2l2 "superkiller viralicid | 0.975 | 0.613 | 0.506 | 1.1e-167 | |
| UNIPROTKB|F1N993 | 1031 | F1N993 "Uncharacterized protei | 0.976 | 0.615 | 0.496 | 4.3e-164 | |
| FB|FBgn0001986 | 1055 | l(2)35Df "lethal (2) 35Df" [Dr | 0.970 | 0.598 | 0.460 | 4.2e-150 | |
| DICTYBASE|DDB_G0275633 | 1128 | DDB_G0275633 "superkiller vira | 0.978 | 0.563 | 0.465 | 3e-149 |
| TAIR|locus:2026001 MTR4 "homolog of yeast MTR4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 2672 (945.6 bits), Expect = 5.3e-278, P = 5.3e-278
Identities = 517/650 (79%), Positives = 589/650 (90%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M+K+ L DDEK +ETIF SA+DMLSDDDKKLPQVSNILP+LKRGIGVHHSGLLPILKE
Sbjct: 340 MSKMVLNSDDEKDAVETIFASAIDMLSDDDKKLPQVSNILPILKRGIGVHHSGLLPILKE 399
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRW+SSGEYIQMSGRAG
Sbjct: 400 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWLSSGEYIQMSGRAG 459
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRGID+RGICILMVD+KMEP+ AK MLKGSADSLNSAFHLSYNMLLNQ+RCEEG PENLL
Sbjct: 460 RRGIDKRGICILMVDEKMEPAVAKSMLKGSADSLNSAFHLSYNMLLNQLRCEEGDPENLL 519
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
RNSF+QFQAD AIPDLEKQ K LEEERDS+VIEEE+SLKNYYNL+ QYKSLKKD+R+IVF
Sbjct: 520 RNSFFQFQADRAIPDLEKQIKSLEEERDSLVIEEEESLKNYYNLILQYKSLKKDIREIVF 579
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
+PKYCLPFL P R VC++CT D+ SFS ED Q TWGV+++F KVK + EDD +++PE
Sbjct: 580 TPKYCLPFLLPNRAVCLDCTNDDEEPQSFSIED-QDTWGVIMKFNKVKSLSEDDDSRRPE 638
Query: 301 DSNYTVNILTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLL 360
D+NYTV++LTRC+VSKDG GKK +K VP+KE GEP+VV+VP+SQI LSSA + +PKDL+
Sbjct: 639 DANYTVDVLTRCMVSKDGVGKKKVKAVPIKERGEPVVVTVPLSQIKSLSSAIMNIPKDLV 698
Query: 361 PLQTRENMLKSTSEFLARNASGLPLDPEANMGIRSSSYQKLVRRIEALESLFDKHEISKS 420
PL+ REN LK SE L+R+ G+PLDPE +M I+SSSY+K VRR+EALE+LF+KH+I+KS
Sbjct: 699 PLEARENALKKVSELLSRHPDGIPLDPEVDMKIKSSSYKKTVRRLEALENLFEKHKIAKS 758
Query: 421 PLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVVEL 480
PLI +KLKVL MK+EL AKIKS+K+ +RSST LAFKDELKARKRVLRRLGY TSD+VVEL
Sbjct: 759 PLITEKLKVLQMKEELIAKIKSLKKTVRSSTALAFKDELKARKRVLRRLGYITSDNVVEL 818
Query: 481 KGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLF 540
KGKVACEISSAEELTLTEL+F+G+ KD KVEE+VSLLSCFVW+E+L DA+KPREEL+LLF
Sbjct: 819 KGKVACEISSAEELTLTELMFSGIFKDAKVEELVSLLSCFVWRERLPDAAKPREELDLLF 878
Query: 541 TQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGS 600
QLQDTARRVA+VQL+CKV+IDVE FV SFRPDIMEAVYAWAKGSKFYE+MEI VFEGS
Sbjct: 879 IQLQDTARRVAEVQLDCKVEIDVESFVQSFRPDIMEAVYAWAKGSKFYEVMEIARVFEGS 938
Query: 601 LIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
LIRAIRR+EEVLQQLI+AAKSIGET+LEAK EEAVSKIKRDIVFAASLYL
Sbjct: 939 LIRAIRRMEEVLQQLIVAAKSIGETQLEAKLEEAVSKIKRDIVFAASLYL 988
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| UNIPROTKB|E2RCI5 SKIV2L2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F5H7E2 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P42285 SKIV2L2 "Superkiller viralicidic activity 2-like 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1SLL6 SKIV2L2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| MGI|MGI:1919448 Skiv2l2 "superkiller viralicidic activity 2-like 2 (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-040426-2854 skiv2l2 "superkiller viralicidic activity 2-like 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1N993 F1N993 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| FB|FBgn0001986 l(2)35Df "lethal (2) 35Df" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0275633 DDB_G0275633 "superkiller viralicidic activity 2-like protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P42285 | SK2L2_HUMAN | 3, ., 6, ., 4, ., 1, 3 | 0.5199 | 0.9769 | 0.6094 | yes | no |
| Q9CZU3 | SK2L2_MOUSE | 3, ., 6, ., 4, ., 1, 3 | 0.5153 | 0.9769 | 0.6105 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4.13 | 0.824 |
| 3rd Layer | 3.6.4 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | gw1.86.170.1 | hypothetical protein (934 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
 | gw1.86.17.1 | • | 0.424 | ||||||||
 | gw1.I.4832.1 | • | • | 0.405 | |||||||
 | estExt_Genewise1_v1.C_LG_VII2715 | • | 0.403 | ||||||||
 | eugene3.00640202 | • | 0.402 |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 650 | |||
| COG4581 | 1041 | COG4581, COG4581, Superfamily II RNA helicase [DNA | 1e-141 | |
| pfam13234 | 266 | pfam13234, rRNA_proc-arch, rRNA-processing arch do | 5e-94 | |
| pfam08148 | 178 | pfam08148, DSHCT, DSHCT (NUC185) domain | 1e-69 | |
| COG1204 | 766 | COG1204, COG1204, Superfamily II helicase [General | 8e-20 | |
| cd13154 | 129 | cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain | 2e-16 | |
| PRK02362 | 737 | PRK02362, PRK02362, ski2-like helicase; Provisiona | 1e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 1e-14 | |
| PRK01172 | 674 | PRK01172, PRK01172, ski2-like helicase; Provisiona | 1e-13 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 5e-13 | |
| PRK00254 | 720 | PRK00254, PRK00254, ski2-like helicase; Provisiona | 3e-10 | |
| COG1202 | 830 | COG1202, COG1202, Superfamily II helicase, archaea | 2e-09 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 1e-08 |
| >gnl|CDD|226947 COG4581, COG4581, Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 437 bits (1125), Expect = e-141
Identities = 230/668 (34%), Positives = 352/668 (52%), Gaps = 43/668 (6%)
Query: 1 MAKLDLTEDDEK-VNIETIFWSAMDMLSDDDKKLP-QVSNILPLLKRGIGVHHSGLLPIL 58
++ LDL +EK I I A+ L+++D++LP Q+ I LL RGI VHH+GLLP +
Sbjct: 399 LSTLDLVLTEEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAI 458
Query: 59 KEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGR 118
KE++E LFQEGL+K +FATETF+IG+NMPA+TVVFT++ KFDG+ RW+S GEY QMSGR
Sbjct: 459 KELVEELFQEGLVKVVFATETFAIGINMPARTVVFTSLSKFDGNGHRWLSPGEYTQMSGR 518
Query: 119 AGRRGIDERGICILMV-DDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGS-P 176
AGRRG+D G I++ + EPS A + G D L S F LSYNM+LN +R E
Sbjct: 519 AGRRGLDVLGTVIVIEPPFESEPSEAAGLASGKLDPLRSQFRLSYNMILNLLRVEGLQTA 578
Query: 177 ENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDS-LKNYYNLLQQYKSLKKDV 235
E+LL SF QFQ ++P++ ++ + LE+E + + E + + L Y+ L+K +
Sbjct: 579 EDLLERSFAQFQNSRSLPEIVEKLERLEKELNDIATELFGTDENDAPKLSLDYEKLRKKL 638
Query: 236 RDIVFSPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDA 295
+ + L L+ GR V I+ G WG ++ + K
Sbjct: 639 NEEMRLQAAGLRALRKGRVVQIK--DGLAAL----------FWGRLL--KLTKRYTTKLT 684
Query: 296 NKKPEDSNYTVNI----LTRCVVSKDGAGKKTLKIVPLKESGEPLVVSVPISQIIKLSSA 351
+ + + R +V A + + V + ++
Sbjct: 685 DHELYLAVLVEPNADFSFPRPLVK---AMPHMNRESRWLVKILFRISFVYLLNATEILEL 741
Query: 352 RLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-----LDPEANMGIRSSSYQKLVRRIE 406
L MP+ LL Q + + A+GL L+ M I+ + ++
Sbjct: 742 ILTMPRRLLSRQGKLRRGE---PSNEAIAAGLDGNEKILENVVEMKIQVPELTVSLLKLR 798
Query: 407 ALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVL 466
++ + E+ ++ + +L A+I+ + + + L+F D+ K + VL
Sbjct: 799 FGRYHLSENPLMNFDGAERLIENELLLSDLQAEIEDLSSSIEA---LSFLDDYKTLQEVL 855
Query: 467 RRLGYATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKL 526
++LG+ + VV +KG+VA EISS +EL LTELIF+G D++ EE+ +LLS FV++EK
Sbjct: 856 KKLGFIEDNAVVLIKGRVAAEISSEDELLLTELIFSGEFNDLEPEELAALLSAFVFEEKT 915
Query: 527 QDASKPREEL-ELLF---TQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWA 582
D + E+ L +L + AR++ K Q +++I E +N F +ME VY WA
Sbjct: 916 DDGTAEAPEITPALRDALLRLLELARKLNKDQNSSQIEIYPE--LNDFSVGLMEVVYEWA 973
Query: 583 KGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDI 642
+G F +I +T + EGS +R RRL E+L+QL AA IG ELE K A+ +I+RDI
Sbjct: 974 RGLSFADICGLTSLLEGSFVRIFRRLRELLRQLRKAASVIGNPELEEKAYRAIQEIRRDI 1033
Query: 643 VFAASLYL 650
VF SLYL
Sbjct: 1034 VFVDSLYL 1041
|
Length = 1041 |
| >gnl|CDD|221998 pfam13234, rRNA_proc-arch, rRNA-processing arch domain | Back alignment and domain information |
|---|
| >gnl|CDD|219729 pfam08148, DSHCT, DSHCT (NUC185) domain | Back alignment and domain information |
|---|
| >gnl|CDD|224125 COG1204, COG1204, Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|240518 cd13154, KOW_Mtr4, KOW_Mtr4 is an inserted domain in Mtr4 globular domain | Back alignment and domain information |
|---|
| >gnl|CDD|235032 PRK02362, PRK02362, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >gnl|CDD|100801 PRK01172, PRK01172, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >gnl|CDD|234702 PRK00254, PRK00254, ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|224123 COG1202, COG1202, Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| KOG0948 | 1041 | consensus Nuclear exosomal RNA helicase MTR4, DEAD | 100.0 | |
| KOG0947 | 1248 | consensus Cytoplasmic exosomal RNA helicase SKI2, | 100.0 | |
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 100.0 | |
| PF08148 | 180 | DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 | 100.0 | |
| PF13234 | 268 | rRNA_proc-arch: rRNA-processing arch domain; PDB: | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 99.9 | |
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.89 | |
| KOG0952 | 1230 | consensus DNA/RNA helicase MER3/SLH1, DEAD-box sup | 99.89 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 99.89 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 99.88 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.88 | |
| KOG0949 | 1330 | consensus Predicted helicase, DEAD-box superfamily | 99.81 | |
| KOG0950 | 1008 | consensus DNA polymerase theta/eta, DEAD-box super | 99.69 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.61 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.47 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.45 | |
| PTZ00424 | 401 | helicase 45; Provisional | 99.43 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.42 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 99.42 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.42 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.4 | |
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.4 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.39 | |
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 99.36 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.36 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 99.35 | |
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 99.34 | |
| KOG0953 | 700 | consensus Mitochondrial RNA helicase SUV3, DEAD-bo | 99.33 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 99.32 | |
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.31 | |
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 99.3 | |
| KOG0328 | 400 | consensus Predicted ATP-dependent RNA helicase FAL | 99.28 | |
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 99.28 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.28 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 99.28 | |
| PTZ00110 | 545 | helicase; Provisional | 99.28 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.27 | |
| KOG0326 | 459 | consensus ATP-dependent RNA helicase [RNA processi | 99.25 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.25 | |
| KOG0332 | 477 | consensus ATP-dependent RNA helicase [RNA processi | 99.23 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 99.22 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.18 | |
| KOG0331 | 519 | consensus ATP-dependent RNA helicase [RNA processi | 99.17 | |
| KOG0333 | 673 | consensus U5 snRNP-like RNA helicase subunit [RNA | 99.14 | |
| KOG0330 | 476 | consensus ATP-dependent RNA helicase [RNA processi | 99.11 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.09 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.08 | |
| KOG0336 | 629 | consensus ATP-dependent RNA helicase [RNA processi | 99.04 | |
| KOG0340 | 442 | consensus ATP-dependent RNA helicase [RNA processi | 99.02 | |
| KOG0342 | 543 | consensus ATP-dependent RNA helicase pitchoune [RN | 99.0 | |
| KOG0344 | 593 | consensus ATP-dependent RNA helicase [RNA processi | 99.0 | |
| KOG0345 | 567 | consensus ATP-dependent RNA helicase [RNA processi | 98.99 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 98.99 | |
| KOG0338 | 691 | consensus ATP-dependent RNA helicase [RNA processi | 98.97 | |
| KOG0348 | 708 | consensus ATP-dependent RNA helicase [RNA processi | 98.96 | |
| KOG0343 | 758 | consensus RNA Helicase [RNA processing and modific | 98.96 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 98.94 | |
| KOG0951 | 1674 | consensus RNA helicase BRR2, DEAD-box superfamily | 98.93 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 98.92 | |
| KOG0351 | 941 | consensus ATP-dependent DNA helicase [Replication, | 98.86 | |
| KOG0347 | 731 | consensus RNA helicase [RNA processing and modific | 98.85 | |
| KOG0335 | 482 | consensus ATP-dependent RNA helicase [RNA processi | 98.83 | |
| KOG4284 | 980 | consensus DEAD box protein [Transcription] | 98.79 | |
| KOG0350 | 620 | consensus DEAD-box ATP-dependent RNA helicase [RNA | 98.78 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 98.76 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 98.76 | |
| KOG0341 | 610 | consensus DEAD-box protein abstrakt [RNA processin | 98.75 | |
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 98.73 | |
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 98.72 | |
| KOG0352 | 641 | consensus ATP-dependent DNA helicase [Replication, | 98.68 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 98.64 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 98.64 | |
| KOG0327 | 397 | consensus Translation initiation factor 4F, helica | 98.62 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 98.59 | |
| KOG0339 | 731 | consensus ATP-dependent RNA helicase [RNA processi | 98.59 | |
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 98.59 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 98.54 | |
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 98.53 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 98.45 | |
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 98.45 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 98.42 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 98.41 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 98.41 | |
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 98.31 | |
| KOG0334 | 997 | consensus RNA helicase [RNA processing and modific | 98.28 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 98.28 | |
| KOG0353 | 695 | consensus ATP-dependent DNA helicase [General func | 98.27 | |
| KOG0346 | 569 | consensus RNA helicase [RNA processing and modific | 98.22 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 98.19 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 98.16 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 98.16 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 98.16 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 98.09 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 98.08 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 97.99 | |
| KOG0354 | 746 | consensus DEAD-box like helicase [General function | 97.92 | |
| KOG0349 | 725 | consensus Putative DEAD-box RNA helicase DDX1 [RNA | 97.9 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 97.9 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 97.8 | |
| KOG4150 | 1034 | consensus Predicted ATP-dependent RNA helicase [RN | 97.8 | |
| KOG0329 | 387 | consensus ATP-dependent RNA helicase [RNA processi | 97.65 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 97.55 | |
| KOG0337 | 529 | consensus ATP-dependent RNA helicase [RNA processi | 97.45 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 97.3 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 97.2 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 97.19 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 97.13 | |
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 97.12 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 97.12 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 97.1 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 96.85 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 96.57 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 96.55 | |
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 96.48 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 96.35 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 96.19 | |
| KOG0924 | 1042 | consensus mRNA splicing factor ATP-dependent RNA h | 95.98 | |
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 95.67 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 95.31 | |
| smart00492 | 141 | HELICc3 helicase superfamily c-terminal domain. | 95.24 | |
| KOG0920 | 924 | consensus ATP-dependent RNA helicase A [RNA proces | 94.54 | |
| smart00491 | 142 | HELICc2 helicase superfamily c-terminal domain. | 92.67 | |
| KOG0926 | 1172 | consensus DEAH-box RNA helicase [RNA processing an | 92.16 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 91.84 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 91.43 | |
| KOG0390 | 776 | consensus DNA repair protein, SNF2 family [Replica | 90.92 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 90.75 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 89.13 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 89.11 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 88.28 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 87.38 | |
| KOG0384 | 1373 | consensus Chromodomain-helicase DNA-binding protei | 86.08 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 85.79 | |
| KOG0392 | 1549 | consensus SNF2 family DNA-dependent ATPase domain- | 85.7 | |
| COG4889 | 1518 | Predicted helicase [General function prediction on | 85.44 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 85.41 | |
| KOG1000 | 689 | consensus Chromatin remodeling protein HARP/SMARCA | 82.75 | |
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 81.59 | |
| KOG0385 | 971 | consensus Chromatin remodeling complex WSTF-ISWI, | 80.93 | |
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 80.72 |
| >KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-157 Score=1276.03 Aligned_cols=637 Identities=58% Similarity=0.906 Sum_probs=611.7
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhh
Q 006319 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETF 80 (650)
Q Consensus 1 l~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tl 80 (650)
|++|||+|++||+.|.++|++||.+|+++|+.+||+.++.++|+||||+||+||+|+.|+.||.||++|.++|||||+||
T Consensus 403 m~kldfN~deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETF 482 (1041)
T KOG0948|consen 403 MSKLDFNTDEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETF 482 (1041)
T ss_pred hccCcCCChhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCcccccccc
Q 006319 81 SIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHL 160 (650)
Q Consensus 81 a~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~ 160 (650)
++|+||||++|||+..+||||..+||++.+||+||+|||||+|.|..|.||++.++++++...+.+++|+++||+|+|++
T Consensus 483 siGLNMPAkTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDekm~~~~ak~m~kG~aD~LnSaFhL 562 (1041)
T KOG0948|consen 483 SIGLNMPAKTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDEKMEPQVAKDMLKGSADPLNSAFHL 562 (1041)
T ss_pred hhccCCcceeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecCcCCHHHHHHHhcCCCcchhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhc
Q 006319 161 SYNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240 (650)
Q Consensus 161 ~~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~ 240 (650)
+|+|+||||++++++|++++++||+|||+..++|.+++++.+++++++.+.++++..+.+|+.++.++.++.+.++..+.
T Consensus 563 tYnMiLNLlRvEei~pe~~l~~SF~QFQ~~~~~P~i~~kl~~~~~~~~~i~i~~E~~v~~yh~l~~ql~~~~k~i~~~~~ 642 (1041)
T KOG0948|consen 563 TYNMILNLLRVEEISPEYMLERSFHQFQNYKALPDIEEKLKQLEEELDSINIPNEEEVKEYHDLELQLEKYGKDIREVIT 642 (1041)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHHHHhhhhhcchHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeeccccCCC-C
Q 006319 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVSKDG-A 319 (650)
Q Consensus 241 ~~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~ 319 (650)
+|++|++||+|||+|.++.+ +.+|+|||++++.+.++..+++.. ..+.+.|+|+++++|...... .
T Consensus 643 ~P~~~l~fLq~GRlV~v~~g------------~~d~~WGvvv~f~k~~~~~~~~~~-~~p~e~Y~vdvll~~~~~~~~~~ 709 (1041)
T KOG0948|consen 643 HPKYCLPFLQPGRLVKVKVG------------GDDFFWGVVVNFIKRKNSSKNSDQ-VGPHESYIVDVLLHCSTESSPVG 709 (1041)
T ss_pred CcchhcccccCCceEEEecC------------CCCCceeEEEEEEeccCCCCCccc-cCCCcceEEEEEeeeeccccccc
Confidence 99999999999999999998 688999999999887654443222 223348999999999733321 1
Q ss_pred CCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCcccccCCCChHH
Q 006319 320 GKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSY 398 (650)
Q Consensus 320 ~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~~i~~~~~ 398 (650)
......|+.+++.+.|.++|+.++.|..||++|+++|+++++.++|.++.+.++++.++||+|+| +||++||+|.+.++
T Consensus 710 ~~~~~~p~~~~ek~~~~vvpv~l~~i~~is~~r~~iP~dl~~~d~r~~~~k~v~e~~~rfp~gip~LdPv~dM~I~~~~~ 789 (1041)
T KOG0948|consen 710 AKKVNVPPRPNEKGEMEVVPVLLTLIDAISSIRLYIPKDLRSVDARLSVLKAVQEVKSRFPDGIPLLDPVKDMNIKDVEF 789 (1041)
T ss_pred cCcCCCCCCCCCCCceEEEeeeHHHHhhhhHHHhcCcccccCcchHHHHHHHHHHHHHhcCCCCCCcChhhccCccchHH
Confidence 22223455678899999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCCcCCCCcc
Q 006319 399 QKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGYATSDDVV 478 (650)
Q Consensus 399 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgyid~~~~v 478 (650)
.++.++++.++.++..||.|+.|+.++.|+.+++|..|..++++++.++++++...+++|+++|++|||+|||++.+++|
T Consensus 790 ~~~~~k~e~lE~~l~~hp~~k~~~~~~~~~~f~~K~~l~~~ik~lk~~l~~~~~i~~ldELk~RkRVLrrLG~~t~ddvi 869 (1041)
T KOG0948|consen 790 KKLVKKIESLEARLESHPLHKSSELEELYKEFQRKETLRAEIKDLKAELKSSQAILQLDELKNRKRVLRRLGYCTSDDVI 869 (1041)
T ss_pred HHHHHHHHHHHHhhccCcccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhCCCCCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHcC
Q 006319 479 ELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVAKVQLECK 558 (650)
Q Consensus 479 t~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~~~~~~l~~~a~~I~~v~~e~~ 558 (650)
.+||||||||+|+|||++|||||+|.|++|+|+|+||||||||||+++++.+.+.++|+.++.+|++.|++|++|+.+|+
T Consensus 870 e~KGrvACEIsSgDELlLTEliFnG~Fndl~~eq~aaLLSCfVf~eks~e~~~l~~el~~~l~~lqe~ArrIAkVs~ecK 949 (1041)
T KOG0948|consen 870 ELKGRVACEISSGDELLLTELIFNGIFNDLPVEQAAALLSCFVFQEKSSEAPKLKEELAGPLRQLQESARRIAKVSKECK 949 (1041)
T ss_pred EEcceEEEEecccchHHHHHHHHhccccCCCHHHHHHHHhheeehhcccccccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHhh
Q 006319 559 VQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKI 638 (650)
Q Consensus 559 l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~~~a~~~I 638 (650)
+++++++|+++|+|.||+|||+||+|++|++||++||+||||||||+|||+||||||++||++|||++|++||++|+.+|
T Consensus 950 lEide~~Yv~sFkp~LMdvVy~W~~GatF~eIckmTdvfEGSiIR~~RRLeElLrQl~~AAk~iGnteLe~Kf~~~~~~i 1029 (1041)
T KOG0948|consen 950 LEIDEEDYVESFKPELMDVVYAWAKGATFAEICKMTDVFEGSIIRTFRRLEELLRQLIDAAKVIGNTELENKFEEAIKKI 1029 (1041)
T ss_pred cccCHHHHHHhcChHHHHHHHHHHccccHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeeeccCCCC
Q 006319 639 KRDIVFAASLYL 650 (650)
Q Consensus 639 kRdIVfa~SLYl 650 (650)
|||||||+||||
T Consensus 1030 kRDIVFAaSLYL 1041 (1041)
T KOG0948|consen 1030 KRDIVFAASLYL 1041 (1041)
T ss_pred hhceeehhhccC
Confidence 999999999997
|
|
| >KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF08148 DSHCT: DSHCT (NUC185) domain; InterPro: IPR012961 This C-terminal domain is found in DOB1/SK12/helY-like DEAD box helicases [] | Back alignment and domain information |
|---|
| >PF13234 rRNA_proc-arch: rRNA-processing arch domain; PDB: 4A4K_E 4A4Z_A 2XGJ_B 3L9O_A | Back alignment and domain information |
|---|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
| >KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
| >KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
| >KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
| >KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
| >KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0343 consensus RNA Helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0347 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG4284 consensus DEAD box protein [Transcription] | Back alignment and domain information |
|---|
| >KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
| >KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
| >KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
| >KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
| >KOG0334 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
| >KOG0353 consensus ATP-dependent DNA helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0346 consensus RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG0354 consensus DEAD-box like helicase [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
| >KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
| >smart00492 HELICc3 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification] | Back alignment and domain information |
|---|
| >smart00491 HELICc2 helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
| >KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
| >KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
| >KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription] | Back alignment and domain information |
|---|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription] | Back alignment and domain information |
|---|
| >COG4889 Predicted helicase [General function prediction only] | Back alignment and domain information |
|---|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
| >KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
| >KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription] | Back alignment and domain information |
|---|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 650 | ||||
| 3l9o_A | 1108 | Crystal Structure Of Mtr4, A Co-Factor Of The Nucle | 1e-153 | ||
| 2xgj_A | 1010 | Structure Of Mtr4, A Dexh Helicase Involved In Nucl | 1e-153 | ||
| 4a4z_A | 997 | Crystal Structure Of The S. Cerevisiae Dexh Helicas | 1e-74 | ||
| 2p6r_A | 702 | Crystal Structure Of Superfamily 2 Helicase Hel308 | 2e-17 | ||
| 2va8_A | 715 | Dna Repair Helicase Hel308 Length = 715 | 6e-15 | ||
| 4f91_B | 1724 | Brr2 Helicase Region Length = 1724 | 2e-12 | ||
| 4f92_B | 1724 | Brr2 Helicase Region S1087l Length = 1724 | 3e-12 | ||
| 2zj2_A | 720 | Archaeal Dna Helicase Hjm Apo State In Form 1 Lengt | 4e-10 |
| >pdb|3L9O|A Chain A, Crystal Structure Of Mtr4, A Co-Factor Of The Nuclear Exosome Length = 1108 | Back alignment and structure |
|
| >pdb|2XGJ|A Chain A, Structure Of Mtr4, A Dexh Helicase Involved In Nuclear Rna Processing And Surveillance Length = 1010 | Back alignment and structure |
| >pdb|4A4Z|A Chain A, Crystal Structure Of The S. Cerevisiae Dexh Helicase Ski2 Bound To Amppnp Length = 997 | Back alignment and structure |
| >pdb|2P6R|A Chain A, Crystal Structure Of Superfamily 2 Helicase Hel308 In Complex With Unwound Dna Length = 702 | Back alignment and structure |
| >pdb|2VA8|A Chain A, Dna Repair Helicase Hel308 Length = 715 | Back alignment and structure |
| >pdb|4F91|B Chain B, Brr2 Helicase Region Length = 1724 | Back alignment and structure |
| >pdb|4F92|B Chain B, Brr2 Helicase Region S1087l Length = 1724 | Back alignment and structure |
| >pdb|2ZJ2|A Chain A, Archaeal Dna Helicase Hjm Apo State In Form 1 Length = 720 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} Length = 1010 | Back alignment and structure |
|---|
Score = 634 bits (1635), Expect = 0.0
Identities = 289/660 (43%), Positives = 423/660 (64%), Gaps = 22/660 (3%)
Query: 1 MAKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKE 60
M+KLD DDEK + IF +A+ +L + D++LPQ+ +ILPLL+RGIG+HHSGLLPILKE
Sbjct: 363 MSKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKE 422
Query: 61 VIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAG 120
VIEILFQEG +K LFATETFSIGLNMPAKTVVFT+VRK+DG +FRW+S GEYIQMSGRAG
Sbjct: 423 VIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAG 482
Query: 121 RRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLSYNMLLNQIRCEEGSPENLL 180
RRG+D+RGI I+M+D+KMEP AK M+KG AD L+SAFHL YNM+LN +R E SPE +L
Sbjct: 483 RRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEGISPEFML 542
Query: 181 RNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVF 240
+SF+QFQ ++P +EK+ L+++ D + +E+E+++K Y+ + Q K ++DVR +V
Sbjct: 543 EHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVT 602
Query: 241 SPKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPE 300
P L FLQPGR V I D+ WG V++F K + + + +
Sbjct: 603 HPANALSFLQPGRLVEISVNGKDNY-----------GWGAVVDFAK-RINKRNPSAVYTD 650
Query: 301 DSNYTVNILTRCVVSKDGAGKKT---------LKIVPLKESGEPLVVSVPISQIIKLSSA 351
+Y VN++ + ++ E V+ + + I + +
Sbjct: 651 HESYIVNVVVNTMYIDSPVNLLKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNL 710
Query: 352 RLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANMGIRSSSYQKLVRRIEALES 410
RL MPKD+ +E + KS E R G+P LDP NM I + KL+++I+ L +
Sbjct: 711 RLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNMKIEDEDFLKLMKKIDVLNT 770
Query: 411 LFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLG 470
+ ++ S +E+ K +L +K +KR++ S + D+L+ RKRVLRRLG
Sbjct: 771 KLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLG 830
Query: 471 YATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDAS 530
+ T +D++ELKG+VACEISS +EL LTELIFNG ++K E+ +LLSCF +QE+ ++A
Sbjct: 831 FCTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAP 890
Query: 531 KPREELELLFTQLQDTARRVAKVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEI 590
+ + EL +++ A ++AK+ + K+++ + +V SFR ++ME VY W +G+ F +I
Sbjct: 891 RLKPELAEPLKAMREIAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQI 950
Query: 591 MEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKFEEAVSKIKRDIVFAASLYL 650
++T V+EGSLIR +RLEE++++L+ A +IG + L+ K E + I RDIV A SLYL
Sbjct: 951 CKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKMEAVLKLIHRDIVSAGSLYL 1010
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} Length = 1108 | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A Length = 997 | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} Length = 715 | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* Length = 720 | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A Length = 702 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A Length = 677 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 100.0 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 100.0 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 100.0 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.87 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.87 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 99.82 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 99.8 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 99.79 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.55 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.54 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.53 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.5 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.5 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.49 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.48 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.45 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.39 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 99.38 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 99.38 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.37 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.07 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.36 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.35 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.35 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.35 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 99.33 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.32 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.31 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.31 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.3 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.3 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 99.28 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.25 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.19 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.13 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.08 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.06 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.05 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.05 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.04 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.04 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 98.97 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 98.97 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 98.97 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.97 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 98.96 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 98.95 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 98.94 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 98.93 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 98.91 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 98.91 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 98.9 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 98.89 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 98.87 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.81 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 98.8 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 98.77 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 98.74 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 98.71 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 98.71 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 98.68 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 98.56 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 98.54 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 98.51 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 98.5 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 98.44 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 98.34 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 98.31 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 98.23 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 98.08 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 93.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 91.68 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 86.7 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 85.79 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 80.72 |
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-118 Score=1071.53 Aligned_cols=637 Identities=45% Similarity=0.764 Sum_probs=593.2
Q ss_pred CCCCCCCHHHHHHHHHHHHHHhhcCCccCCCchhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhh
Q 006319 2 AKLDLTEDDEKVNIETIFWSAMDMLSDDDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFS 81 (650)
Q Consensus 2 ~~l~~~~~~e~~~i~~~~~~~i~~l~~~d~~~~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla 81 (650)
.++.+++..|+..++.++++.+..|+++|+.++++..+.+++.+||++|||||++.+|+.++.+|++|.++|||||++++
T Consensus 364 ~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la 443 (1010)
T 2xgj_A 364 SKLDFNSDDEKEALTKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFS 443 (1010)
T ss_dssp TTSCCCCHHHHHHHHHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGG
T ss_pred HhCCCCChHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCceEEEeccccccCCCccccCHhHHHhhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCCccccccccC
Q 006319 82 IGLNMPAKTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSADSLNSAFHLS 161 (650)
Q Consensus 82 ~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~pl~S~~~~~ 161 (650)
+|||+|+.+|||.+..+||+.+++|.++.+|+||+|||||+|.|..|.+++++.+..+...+.+++.+.++|+.|+|.++
T Consensus 444 ~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~~~~~e~~~~~~l~~~~~~~l~s~f~~~ 523 (1010)
T 2xgj_A 444 IGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLG 523 (1010)
T ss_dssp GSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTTTCSSEEEEEEECSCCCHHHHHHHHSCCCCCCCCCCCCC
T ss_pred ccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCCCCCceEEEEEECCCCCHHHHHHHHhCCCcccccccCCc
Confidence 99999999999999999999999999999999999999999999999999999887778889999999999999999999
Q ss_pred hHHHHHHHHhcCCChHHHHHhhHHHHHhhcCccHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHHHHhhcC
Q 006319 162 YNMLLNQIRCEEGSPENLLRNSFYQFQADHAIPDLEKQAKVLEEERDSMVIEEEDSLKNYYNLLQQYKSLKKDVRDIVFS 241 (650)
Q Consensus 162 ~~~~l~ll~~~~~~~e~~~~~sf~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 241 (650)
|+|++|+++..+.++++++.++|.+|+.....+.+++++.+++++++.+....+.++.+|+.++.++...++.++..+..
T Consensus 524 ~~~ilnll~~~~~~~e~ll~rsf~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 603 (1010)
T 2xgj_A 524 YNMILNLMRVEGISPEFMLEHSFFQFQNVISVPVMEKKLAELKKDFDGIEVEDEENVKEYHEIEQAIKGYREDVRQVVTH 603 (1010)
T ss_dssp HHHHHHHHHSSSCCHHHHHHHCHHHHHHHHHHHHHHHHC-CHHHHHHSSCCCSCTHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCChhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCCCceEEEecCCCCCCCCCCCCCCccceEEEEEeeecccCccCCCCCCCCCCCCceEEEEeecccc--C---
Q 006319 242 PKYCLPFLQPGRFVCIECTRGDDNSPSFSTEDHQVTWGVVIEFEKVKGVYEDDANKKPEDSNYTVNILTRCVVS--K--- 316 (650)
Q Consensus 242 ~~~~~~~l~~gr~v~~~~~~~~~~~~~~~~~~~~~~~gvv~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~--- 316 (650)
+..++.||+|||+|.++... +.+++||||+++.+.+. +++....+.....|+++|++.|... +
T Consensus 604 ~~~~~~~l~~Gr~v~~~~~~-----------~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 671 (1010)
T 2xgj_A 604 PANALSFLQPGRLVEISVNG-----------KDNYGWGAVVDFAKRIN-KRNPSAVYTDHESYIVNVVVNTMYIDSPVNL 671 (1010)
T ss_dssp HHHHGGGCCTTEEEEEEETT-----------TEEEEEEEEEEEEECCC-SSCTTCCCCTTTTEEEEEEEEEEETTSCGGG
T ss_pred cHHHHhhcCCCcEEEEEcCC-----------CCcceeEEEEecccccC-CCccccccccCCceeEEEEeecccccccccc
Confidence 99999999999999999831 47799999999875421 1110112233457999999998421 1
Q ss_pred CC----CCCCcccccCCCCCCCeEEEEecccceeccccceeeCCCCCCCHHHHHHHHHHHHHHHHhcCCCCC-CCccccc
Q 006319 317 DG----AGKKTLKIVPLKESGEPLVVSVPISQIIKLSSARLPMPKDLLPLQTRENMLKSTSEFLARNASGLP-LDPEANM 391 (650)
Q Consensus 317 ~~----~~~~~~~p~~~~~~~~~~~~~v~~~~i~~i~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~p-l~~~~~~ 391 (650)
.. ..+....|++++.++.|.++++++++|..|+.+++++|+++++...|+.+.+++.++.+++++++| +||+++|
T Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 751 (1010)
T 2xgj_A 672 LKPFNPTLPEGIRPAEEGEKSICAVIPITLDSIKSIGNLRLYMPKDIRASGQKETVGKSLREVNRRFPDGIPVLDPVKNM 751 (1010)
T ss_dssp CCTTCCCCCTTCCBCCTTCCEEEEEEEECGGGEEEEEEEECCCCSSTTCSSSHHHHHHHHHHHHHHSSSCCCBCCTTTTS
T ss_pred ccccccccccccCCCCCCcCCceEEEEechhhcceeeeeeEecccccCChHHHHHHHHHHHHHHHhcccCCcccCchhhh
Confidence 00 022345566778889999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCChHHHHHHHHHHHHHHHHhhCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHhchhcchhHHHHHHHHHHHhHhCC
Q 006319 392 GIRSSSYQKLVRRIEALESLFDKHEISKSPLIEQKLKVLHMKQELTAKIKSIKRQMRSSTELAFKDELKARKRVLRRLGY 471 (650)
Q Consensus 392 ~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~e~~~~~~VL~~Lgy 471 (650)
++++.++.+...+++.+++++.+||||+||++++||++++++.+++++++++++++++.+++.+++||++|++||++|||
T Consensus 752 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~~l~~ 831 (1010)
T 2xgj_A 752 KIEDEDFLKLMKKIDVLNTKLSSNPLTNSMRLEELYGKYSRKHDLHEDMKQLKRKISESQAVIQLDDLRRRKRVLRRLGF 831 (1010)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTSHHHHSSSHHHHHHHHHHC-CHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHHHTS
T ss_pred ccccHHHHHHHHHHHHHHHHHHhCCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999998888899999999999999999
Q ss_pred cCCCCccchhhhHHhhhcCCchhHHHHHHHhCCCCCCChhHHHHHhhcceeeccCCCCCCCcHHHHHHHHHHHHHHHHHH
Q 006319 472 ATSDDVVELKGKVACEISSAEELTLTELIFNGVLKDVKVEEMVSLLSCFVWQEKLQDASKPREELELLFTQLQDTARRVA 551 (650)
Q Consensus 472 id~~~~vt~KGrvA~eI~s~dELllTEllf~g~f~~L~p~eiaAllS~fV~qek~~~~~~l~~~L~~~~~~l~~~a~~I~ 551 (650)
||++++||+||||||||+|+||||+|||||+|+|++|+|+||||+|||||||+|+++.|.++++|.+++++++++|++|+
T Consensus 832 ~~~~~~v~~kGr~a~~i~~~~el~~~e~~~~g~~~~l~p~~~aa~~s~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 911 (1010)
T 2xgj_A 832 CTPNDIIELKGRVACEISSGDELLLTELIFNGNFNELKPEQAAALLSCFAFQERCKEAPRLKPELAEPLKAMREIAAKIA 911 (1010)
T ss_dssp BCTTCCBCHHHHHHHTCCSSCHHHHHHHHHHTTTTTCCHHHHHHHHHHHHCCCCCSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCcccHHHHHHHHhcCccHHHHHHHHHcCccCCCCHHHHHHHHeeeEeecCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99989999999999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred HHHHHcCCCcccccccccCCccHHHHHHHHhCCCCHHHHHhhCCCCCChHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHH
Q 006319 552 KVQLECKVQIDVEGFVNSFRPDIMEAVYAWAKGSKFYEIMEITPVFEGSLIRAIRRLEEVLQQLILAAKSIGETELEAKF 631 (650)
Q Consensus 552 ~v~~e~~l~i~~~~y~~~~~~~Lm~vVy~WA~G~~F~eI~~~Tdl~EG~IVR~irRL~Ellrq~~~Aa~~iGn~~L~~k~ 631 (650)
+++.+|++++++++|+++|+|+||+|||+||+|+||++||++|+++|||||||||||+||||||++||++|||++|++||
T Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~~Wa~g~~~~~i~~~t~~~eG~~vR~~~rl~ell~q~~~a~~~~g~~~l~~~~ 991 (1010)
T 2xgj_A 912 KIMKDSKIEVVEKDYVESFRHELMEVVYEWCRGATFTQICKMTDVYEGSLIRMFKRLEELVKELVDVANTIGNSSLKEKM 991 (1010)
T ss_dssp HHHHHTTCCCCHHHHHHTSCCTTHHHHHHHTTTCCHHHHTTSCSSCHHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHhCCCCChhHhcccCChHHHHHHHHHhCCCCHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCeeeccCCCC
Q 006319 632 EEAVSKIKRDIVFAASLYL 650 (650)
Q Consensus 632 ~~a~~~IkRdIVfa~SLYl 650 (650)
++|+++|||||||++||||
T Consensus 992 ~~a~~~i~R~iv~~~sly~ 1010 (1010)
T 2xgj_A 992 EAVLKLIHRDIVSAGSLYL 1010 (1010)
T ss_dssp HHHHHHHSCGGGGCCCC-C
T ss_pred HHHHHhccCCeEecccccC
Confidence 9999999999999999997
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 650 | ||||
| d2p6ra4 | 201 | c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglob | 3e-21 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-05 | |
| d1wp9a2 | 286 | c.37.1.19 (A:201-486) putative ATP-dependent RNA h | 2e-04 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 2e-04 | |
| d2eyqa5 | 211 | c.37.1.19 (A:779-989) Transcription-repair couplin | 0.003 |
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} Length = 201 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 90.0 bits (222), Expect = 3e-21
Identities = 42/121 (34%), Positives = 69/121 (57%), Gaps = 1/121 (0%)
Query: 29 DDKKLPQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPA 88
++ + + +++G HH+GLL + V+E F+ G IK + AT T + G+N+PA
Sbjct: 79 EENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPA 138
Query: 89 KTVVFTNVRKFDGDKFRWISSGEYIQMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLK 148
+ V+ ++ +FDG + I EY QM+GRAGR G+DERG I++V + K +
Sbjct: 139 RRVIVRSLYRFDG-YSKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIF 197
Query: 149 G 149
G
Sbjct: 198 G 198
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Length = 286 | Back information, alignment and structure |
|---|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} Length = 211 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 650 | |||
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.93 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.57 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.52 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.5 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.5 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.48 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.46 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.44 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.43 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.42 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.34 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.26 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.15 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.06 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.05 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 98.78 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.59 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.48 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 98.15 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 97.85 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 97.81 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 95.71 | |
| d2p6ra2 | 198 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 84.36 |
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.93 E-value=2.5e-26 Score=225.10 Aligned_cols=118 Identities=36% Similarity=0.619 Sum_probs=108.1
Q ss_pred hhHHhHHHHhccCEEEEcCCCCHHHHHHHHHHHHcCCCcEEEechhhhcccCCCCceEEEeccccccCCCccccCHhHHH
Q 006319 34 PQVSNILPLLKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDKFRWISSGEYI 113 (650)
Q Consensus 34 ~~~~~l~~~l~~GIg~hH~gl~~~~R~~ve~lF~~g~i~vLvaT~tla~Gin~pa~~VVi~~~~k~dg~~~~~~~~~e~~ 113 (650)
.....|.+++.+|||+|||||++.+|..||++|++|.++|||||+|+++|||+|+.+|||.++++|||.+ .++++.+|+
T Consensus 84 ~~~~~L~~~l~~GIa~hh~~l~~~~r~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~~~~~d~~~-~~~~~~~~~ 162 (201)
T d2p6ra4 84 EMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYS-KRIKVSEYK 162 (201)
T ss_dssp HHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSE-EECCHHHHH
T ss_pred hhhHHHHHHHhccHHHHHHHhhhhhHHHHHHHHhCCCceEEEechHHHhhcCCCCceEEEecceeccCCc-CCCCHHHHH
Confidence 3456789999999999999999999999999999999999999999999999999999999999999855 478999999
Q ss_pred hhhccCCCCCCCCceEEEEeecCCCcHHHHHHHhcCCCC
Q 006319 114 QMSGRAGRRGIDERGICILMVDDKMEPSTAKMMLKGSAD 152 (650)
Q Consensus 114 qm~GRAGR~g~d~~G~~ii~~~~~~~~~~~~~~~~~~~~ 152 (650)
||+|||||+|.|..|.+++++.+......+++|+.|+|+
T Consensus 163 q~~GRAGR~g~~~~G~~~l~~~~~~~~~~~k~~~~~~pe 201 (201)
T d2p6ra4 163 QMAGRAGRPGMDERGEAIIIVGKRDREIAVKRYIFGEPE 201 (201)
T ss_dssp HHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTTTSSCCC
T ss_pred HHhcccCCCCCCCeeEEEEEeCCCChHHHHHHHhccCCC
Confidence 999999999999999999998887555578889988763
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
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| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
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| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
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| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
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| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
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| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d2p6ra2 a.289.1.2 (A:489-686) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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