Citrus Sinensis ID: 006333

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
Protein Sequence
MPHLSTSFYSRPPNANRFHLNLRPSTSVLRLPNRKLIPAMSFSSSSASKMNTRQVKNPGTTDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEccccccccccEEEEEEccccEEEEEEcccccccccccccccccEEEEEEEEccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHccccccccccccccccccccccccccccccEEEccccccccccHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccHHHHcccccccccccccEEEEEEEEccccccccEEEEEcccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccccccEEEEEEEcccccHHcccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcEEccHHHHHHHccccccccEEEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccHHHHHHHHHHHHHccccHHHHccccccccHcccccccHHccccccccccccccccccccccccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccccccEEEEEEcccccccccccEEEEcccccEEEEEcccccHHHHHHHHcccccEEEEEEEHHHHHHHHHcccHHEEEEccHHHHHHHHHHHHHHccccEEEEccccHHHHHHHHccccccccEEEEEEcccccccccccccccEEEEcccccccccccHHHHHHHcccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcHHHccccccccHHHHHHHHHHHccHHcccccccccccccccccccccccEEEEEEEEccccccccEEEEcccHHHHHHHHHHcccccccccccccccccccHEEccccHHHHHHHHHHcHHHHHHHHEEEEEEccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccHHHHHHccccccccEEEEEEEccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mphlstsfysrppnanrfhlnlrpstsvlrlpnrklipamsfssssaskmntrqvknpgttdprklshvlkyhdqtkhsftkyargphgldwanqpnpfrryisapllplmhlpnrtdhrtqtpsslsnynhdnaplysslftslpppqpltvssiSQLFYDSLALSAWkttgystwslrvnpssgnlhpteayiiapaieslcdspfvahyapkeHALELRAKIpsrfdlfnnffpknsflvgFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKklmgldifpefvipskpikgkipeiefehpdcvlvvfpsgatgfdvnYEKLRLLMEEFSAldwkgkpnllskehfCWDIIYSTAEvvkkpltirnafsvdpfsssgvcsessykgftvREVVRKRRsavdmdgvtaIDRETFYQIMLHclpsgsrsreKQKRQLALPYRVLSWDAEVHAALFIHRvkglpkglYFLVRNEDHLGELKKAVRSgfvwekpegcprdlplyelARGDCQQLAKglschqdiagdgcfslgmvahfeptlsnknvwmyprLFWETGVLGQVLYLEAHAvgisatgigcffddpvhevlgltgskfqslyhftvggpvvdrrimslpaypgpnida
Flexible Loop (DISEMBL)
mphlstsfysrppnanrfhlnlrpstsvlrlpnrKLIPAmsfssssaskmntrqvknpgttdprklshVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAfsvdpfsssgvcsessykgftvrevvrkrrsavdmdgvtaiDRETFYQIMLHClpsgsrsrekQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAvrsgfvwekpegcPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMslpaypgpnida
Low Complexity Region (SEG)
MPHLSTSFYSRPPNANRFHLNLRPSTSVLRLPNRKLIPAMsfssssasKMNTRQVKNPGTTDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHaiaavamaaaELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA
Disordered region (IsUnstruct)
*********************************************************************LKYHD*TKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMH**************************************LTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLP***********QLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSL**********
Disordered Region (DISOPRED)
*****T*FYSRPPNANRFHLNLRPSTSV************************************KLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNH***************PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTI**************CSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR**************
Disordered Region (DISEMBL)
MPHLSTSFYSRPPNANRFHLNLRPSTSVLRLPNRKLIPAMS*******************TDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPF***********KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPS***********LALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA
Disordered Region (DISPRO)
*******FYSRPPNANRFHLNLRPSTSVLRLPNRKLIP************************PRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKP*TIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPG*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooohhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPHLSTSFYSRPPNANRFHLNLRPSTSVLRLPNRKLIPAMSFSSSSASKMNTRQVKNPGTTDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
224067710	598	predicted protein [Populus trichocarpa]	0.889	0.966	0.762	0.0
255541242	639	oxidoreductase, putative [Ricinus commun	0.903	0.918	0.755	0.0
449480031	599	PREDICTED: LOW QUALITY PROTEIN: uncharac	0.918	0.996	0.716	0.0
449432273	645	PREDICTED: uncharacterized protein LOC10	0.893	0.900	0.731	0.0
225454001	586	PREDICTED: uncharacterized protein LOC10	0.872	0.967	0.727	0.0
356506375	602	PREDICTED: uncharacterized protein LOC10	0.88	0.950	0.722	0.0
357469791	633	hypothetical protein MTR_4g025130 [Medic	0.812	0.834	0.720	0.0
297842920	872	hypothetical protein ARALYDRAFT_333455 [	0.907	0.676	0.668	0.0
22329282	642	nitroreductase-like protein [Arabidopsis	0.924	0.936	0.652	0.0
296089192	536	unnamed protein product [Vitis vinifera]	0.795	0.964	0.667	0.0

>gi|224067710|ref|XP_002302529.1| predicted protein [Populus trichocarpa] gi|222844255|gb|EEE81802.1| predicted protein [Populus trichocarpa]

 Score =  933 bits (2411), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 450/590 (76%), Positives = 504/590 (85%), Gaps = 12/590 (2%)

Query: 62  DPRKL-SHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHR 120
           DP  L + VLKYH+QTKH FT YARGPHGLDWANQPNPFRRY+S+PLL L+H P   +  
Sbjct: 20  DPENLIAQVLKYHNQTKHFFTNYARGPHGLDWANQPNPFRRYVSSPLLSLLHFPVENNQD 79

Query: 121 TQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR 180
           + + S         APLY SLF SLP P+P++ SSISQLFYDSLALSAWKTTG+STWSLR
Sbjct: 80  STSVS---------APLYHSLFNSLPSPKPISKSSISQLFYDSLALSAWKTTGFSTWSLR 130

Query: 181 VNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNS 240
           VNPSSGNLHPTEAYII+PA++S+CDS FVAHYAPKEH+LELRAKIP  F    +FFP N+
Sbjct: 131 VNPSSGNLHPTEAYIISPAVDSVCDSAFVAHYAPKEHSLELRAKIPDTF--LPSFFPSNA 188

Query: 241 FLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKL 300
           FL+G SSIFWREAWKYGERAFRYCNHDVGHAIAA+++AAAELGWDVK+L+G+G KEL++L
Sbjct: 189 FLIGVSSIFWREAWKYGERAFRYCNHDVGHAIAAISLAAAELGWDVKLLDGLGSKELERL 248

Query: 301 MGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALD 360
           MGL I+  F IP KPIKGK PEIEFEHPDCVLVVFP+G   F+VNY++L L + EF  L+
Sbjct: 249 MGLGIYQGFRIPDKPIKGKFPEIEFEHPDCVLVVFPNGVNDFNVNYKELSLAIMEFGNLE 308

Query: 361 WKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVV 420
           W G PN LSK+H CWD+IYSTAE VKKPL I + F VD F SSGVCSE SYKGF+ RE++
Sbjct: 309 WIGNPNSLSKKHVCWDVIYSTAEAVKKPLKIDDRFLVDKFQSSGVCSEGSYKGFSAREII 368

Query: 421 RKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALF 480
           RKRRSAVDMDGVT I+R+TFYQIMLHCLPSG  S EKQKRQLALP+R LSWDAEVHA LF
Sbjct: 369 RKRRSAVDMDGVTKIERDTFYQIMLHCLPSGCGSGEKQKRQLALPFRALSWDAEVHAVLF 428

Query: 481 IHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKG 540
           +HRV GLPKGLYFLVRNEDHL ELKK+ R+ F WEKPEGCP DLPLYELAR DCQQ+AK 
Sbjct: 429 VHRVVGLPKGLYFLVRNEDHLDELKKSTRAEFKWEKPEGCPVDLPLYELARSDCQQIAKQ 488

Query: 541 LSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATG 600
           LSCHQDIA DGCFSLGMVAHFEPTL +K  WMYPRLFWETGVLGQVLYLEAHAVGISATG
Sbjct: 489 LSCHQDIASDGCFSLGMVAHFEPTLHSKGAWMYPRLFWETGVLGQVLYLEAHAVGISATG 548

Query: 601 IGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA 650
           IGCFFDDPVHE+LGL GS FQSLYHFTVGGPV+D+RIM+LPAYPGP+ DA
Sbjct: 549 IGCFFDDPVHEILGLRGSNFQSLYHFTVGGPVLDKRIMNLPAYPGPSTDA 598

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541242|ref|XP_002511685.1| oxidoreductase, putative [Ricinus communis] gi|223548865|gb|EEF50354.1| oxidoreductase, putative [Ricinus communis]

 Score =  918 bits (2373), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 455/602 (75%), Positives = 516/602 (85%), Gaps = 15/602 (2%)

Query: 51  NTRQVKNPGTTDP--RKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLL 108
           N++++KN  T DP  +KL+ VL+YH+QTKHSFT YARGP GLDWANQPNPFRRYISAPLL
Sbjct: 51  NSKEIKNK-TPDPDTQKLNQVLRYHNQTKHSFTNYARGPRGLDWANQPNPFRRYISAPLL 109

Query: 109 PLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSA 168
            L+H P  TD+  Q P        D+APLY S+F SLP P+ ++ SSISQLFY+SLALSA
Sbjct: 110 SLLHFP--TDN--QDPGV------DSAPLYHSVFNSLPSPKSISKSSISQLFYNSLALSA 159

Query: 169 WKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSR 228
           WKTTG+STWSLRVNPSSGNLHPTEAY+IAP IES+ DS FV+HYAPKEH+LELRA IPS 
Sbjct: 160 WKTTGFSTWSLRVNPSSGNLHPTEAYLIAPPIESISDSAFVSHYAPKEHSLELRATIPSN 219

Query: 229 FDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKI 288
           F  F  +FP+NSFL+G SSIFWREAWKYGERAFRYCNHDVGHAIAA++MAAA LGWDVK+
Sbjct: 220 F--FPKYFPRNSFLIGISSIFWREAWKYGERAFRYCNHDVGHAIAAISMAAAGLGWDVKL 277

Query: 289 LEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEK 348
           L+G+G KEL++LMGL+++  F IP  PIKGK+PEIEFEHPDC+L+VFP+G   FDVNY++
Sbjct: 278 LDGLGSKELERLMGLEMYQGFQIPDNPIKGKMPEIEFEHPDCLLLVFPNGVKDFDVNYKE 337

Query: 349 LRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSE 408
           L   + EF  L+WKGKPN LSKEH CWDIIY TAE VKKP T+ +  S+ PF SSGVCSE
Sbjct: 338 LSSAIMEFRNLEWKGKPNSLSKEHICWDIIYKTAEAVKKPFTLGDDLSIYPFQSSGVCSE 397

Query: 409 SSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRV 468
            SYK FTVRE+VRKRRSAVDMDGVT IDR+TFYQI+LHC+PSGS S E+QKR LALP+R 
Sbjct: 398 GSYKSFTVREIVRKRRSAVDMDGVTEIDRDTFYQILLHCVPSGSGSGERQKRLLALPFRA 457

Query: 469 LSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYE 528
           LSWDAEVHAALF+HRV  L KGLYFLVRNEDHL +LKKA R+GF WEKPEGCP DLPLYE
Sbjct: 458 LSWDAEVHAALFVHRVTRLSKGLYFLVRNEDHLNDLKKATRAGFTWEKPEGCPDDLPLYE 517

Query: 529 LARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLY 588
           LA GDCQQ++K LSCHQDIA DGCFSLGMVAHFEPTL NK VWMYPRLFWETGVLGQVLY
Sbjct: 518 LAGGDCQQISKQLSCHQDIASDGCFSLGMVAHFEPTLRNKGVWMYPRLFWETGVLGQVLY 577

Query: 589 LEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNI 648
           LEAHA+GISATGIGCFFDDPVHE+LGL GS +QSLYHFTVGGPV+D+RIMSLPAYPGP I
Sbjct: 578 LEAHAIGISATGIGCFFDDPVHEILGLRGSNYQSLYHFTVGGPVLDKRIMSLPAYPGPGI 637

Query: 649 DA 650
           DA
Sbjct: 638 DA 639

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480031|ref|XP_004155780.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101228460 [Cucumis sativus]

 Score =  886 bits (2289), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/613 (71%), Positives = 495/613 (80%), Gaps = 16/613 (2%)

Query: 39  AMSFSSSSAS-KMNTRQVKNPGTTDPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPN 97
           AMSFSSS+++ K +  Q       D + LS VLKYH QTKH F+ YARGPHGLDWANQPN
Sbjct: 2   AMSFSSSTSTPKTHLEQ-------DDQNLSQVLKYHSQTKHGFSNYARGPHGLDWANQPN 54

Query: 98  PFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSIS 157
           PFRRYISAPLLPL H P          ++ S+     A LY SLF SLPPP+P+  ++IS
Sbjct: 55  PFRRYISAPLLPLSHFP------ILNQTAASDDETHEASLYDSLFVSLPPPKPVCKATIS 108

Query: 158 QLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEH 217
           Q FYDSLALSAWK+TG+STWSLRVNPSSGNLHPTEAY+IAP + SL D  FVAHYAPKEH
Sbjct: 109 QFFYDSLALSAWKSTGFSTWSLRVNPSSGNLHPTEAYLIAPPVTSLSDYGFVAHYAPKEH 168

Query: 218 ALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAM 277
           ALE+R +IP  F  F+ FFP+NSFL+G SSIFWREAWKYGERAFRYCNHDVGHAIAAVAM
Sbjct: 169 ALEIRTQIPPGF--FSKFFPENSFLIGLSSIFWREAWKYGERAFRYCNHDVGHAIAAVAM 226

Query: 278 AAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPS 337
           AAA LGWDVK+L+G+GY +LKKLMGL  FPEF IPS+P+KG  P IEFEHPDCVL VFPS
Sbjct: 227 AAAGLGWDVKVLDGLGYADLKKLMGLHTFPEFEIPSQPVKGSFPVIEFEHPDCVLAVFPS 286

Query: 338 GATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSV 397
           G   F +NYE+L   + +FS LDWKGK NLLSK+H CWDIIY TA  V+KPLT  +   V
Sbjct: 287 GTADFSMNYEELSSAVLKFSELDWKGKXNLLSKQHICWDIIYRTAMAVEKPLTGESGSLV 346

Query: 398 DPFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREK 457
           +PF SSGV  E  YKGFT REVVRKRRSAVDMDGVT + R+TFYQI+LHC+PSGS   E+
Sbjct: 347 EPFQSSGVLGERPYKGFTWREVVRKRRSAVDMDGVTTMARDTFYQILLHCVPSGSIEGER 406

Query: 458 QKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKP 517
           Q+R+LALP+R L WDAEVHAALF+HRV GLP+GLYFLVRNEDH  ELKKA    F W KP
Sbjct: 407 QRRELALPFRALPWDAEVHAALFVHRVVGLPQGLYFLVRNEDHFDELKKATNPDFKWVKP 466

Query: 518 EGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLF 577
           +GCP  LPLYEL RG+ Q L+K LSCHQDIA DGCFSLGM+AH+EPTL  K V MYPRLF
Sbjct: 467 DGCPSSLPLYELRRGNYQTLSKRLSCHQDIASDGCFSLGMIAHYEPTLREKGVHMYPRLF 526

Query: 578 WETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI 637
           WETGV+GQVLYLEAHAV ISATGIGCFFDDPVHE LGL GS FQSLYHFTVGGPV+D+RI
Sbjct: 527 WETGVIGQVLYLEAHAVDISATGIGCFFDDPVHEALGLKGSNFQSLYHFTVGGPVLDKRI 586

Query: 638 MSLPAYPGPNIDA 650
           MSLPAYPGPN+D+
Sbjct: 587 MSLPAYPGPNVDS 599

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432273|ref|XP_004133924.1| PREDICTED: uncharacterized protein LOC101216535 [Cucumis sativus]

 Score =  881 bits (2276), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/589 (73%), Positives = 483/589 (82%), Gaps = 8/589 (1%)

Query: 62  DPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRT 121
           D + LS VLKYH QTKH F+ YARGPHGLDWANQPNPFRRYISAPLLPL H P       
Sbjct: 65  DDQNLSQVLKYHSQTKHGFSNYARGPHGLDWANQPNPFRRYISAPLLPLSHFP------I 118

Query: 122 QTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRV 181
              ++ S+     A LY SLF SLPPP+P+  ++ISQ FYDSLALSAWK+TG+STWSLRV
Sbjct: 119 LNQTAASDDETHEASLYDSLFVSLPPPKPVCKATISQFFYDSLALSAWKSTGFSTWSLRV 178

Query: 182 NPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSF 241
           NPSSGNLHPTEAY+IAP + SL D  FVAHYAPKEHALE+R +IP  F  F+ FFP+NSF
Sbjct: 179 NPSSGNLHPTEAYLIAPPVTSLSDYGFVAHYAPKEHALEIRTQIPPGF--FSKFFPENSF 236

Query: 242 LVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM 301
           L+G SSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAA LGWDVK+L+G+GY +LKKLM
Sbjct: 237 LIGLSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAGLGWDVKVLDGLGYADLKKLM 296

Query: 302 GLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDW 361
           GL  FPEF IPS+P+KG  P IEFEHPDCVL VFPSG   F +NYE+L   + +FS LDW
Sbjct: 297 GLHTFPEFEIPSQPVKGSFPVIEFEHPDCVLAVFPSGTADFSMNYEELSSAVLKFSELDW 356

Query: 362 KGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVR 421
           KGKPNLLSK+H CWDIIY TA  V+KPLT  +   V+PF SSGV  E  YKGFT REVVR
Sbjct: 357 KGKPNLLSKQHICWDIIYRTAMAVEKPLTGESGSLVEPFQSSGVLGERPYKGFTWREVVR 416

Query: 422 KRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFI 481
           KRRSAVDMDGVT + R+TFYQI+LHC+PSGS   E+Q+R+LALP+R L WDAEVHAALF+
Sbjct: 417 KRRSAVDMDGVTTMARDTFYQILLHCVPSGSIEGERQRRELALPFRALPWDAEVHAALFV 476

Query: 482 HRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGL 541
           HRV GLP+GLYFLVRNEDH  ELKKA    F W KP+GCP  LPLYEL RG+ Q L+K L
Sbjct: 477 HRVVGLPQGLYFLVRNEDHFDELKKATNPDFKWVKPDGCPSSLPLYELRRGNYQTLSKRL 536

Query: 542 SCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGI 601
           SCHQDIA DGCFSLGM+AH+EPTL  K V MYPRLFWETGV+GQVLYLEAHAV ISATGI
Sbjct: 537 SCHQDIASDGCFSLGMIAHYEPTLREKGVHMYPRLFWETGVIGQVLYLEAHAVDISATGI 596

Query: 602 GCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA 650
           GCFFDDPVHE LGL GS FQSLYHFTVGGPV+D+RIMSLPAYPGPN+D+
Sbjct: 597 GCFFDDPVHEALGLKGSNFQSLYHFTVGGPVLDKRIMSLPAYPGPNVDS 645

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454001|ref|XP_002274671.1| PREDICTED: uncharacterized protein LOC100243840 [Vitis vinifera]

 Score =  874 bits (2258), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/584 (72%), Positives = 485/584 (83%), Gaps = 17/584 (2%)

Query: 67  SHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSS 126
           + VLKYH+QTKHSFT YARGP GLDWANQP PFRR+ SA                  P  
Sbjct: 20  AQVLKYHNQTKHSFTNYARGPRGLDWANQPKPFRRFDSA---------------PLVPLL 64

Query: 127 LSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSG 186
                +   P YSS+F +LPPP+P++ S+ISQLF+DSLA+SAWKTTG+STWSLRVNPSSG
Sbjct: 65  HPPPPNQTPPPYSSVFLNLPPPKPISKSTISQLFFDSLAISAWKTTGFSTWSLRVNPSSG 124

Query: 187 NLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFS 246
           NLHPTE+YIIAPAIES+ DS FVAHYAPKEH+LE+RA+I S F     FFPK SFL+GFS
Sbjct: 125 NLHPTESYIIAPAIESVSDSAFVAHYAPKEHSLEVRAEISSGF--LPKFFPKGSFLIGFS 182

Query: 247 SIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIF 306
           SIFWREAWKYGERAFRYCNHDVGHAIAAV+MAAAELGWDVK+L+G+GY++LKKLMGL+IF
Sbjct: 183 SIFWREAWKYGERAFRYCNHDVGHAIAAVSMAAAELGWDVKVLDGLGYEDLKKLMGLEIF 242

Query: 307 PEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPN 366
           PEF IP++P+KGK P IEF+HPDCVLVVFP+G   F+VNY +L + +  FS L WKGKPN
Sbjct: 243 PEFEIPARPVKGKFPVIEFDHPDCVLVVFPNGVGEFNVNYRELSMAISRFSELKWKGKPN 302

Query: 367 LLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSA 426
           +LS+EH CWDIIY TAE VKKPL I + FS+DPF SS + +ESSYK  TV EVVRKRRSA
Sbjct: 303 VLSREHICWDIIYRTAEAVKKPLMIEHKFSIDPFHSSRLFNESSYKNLTVSEVVRKRRSA 362

Query: 427 VDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKG 486
           VDMDGV  + R+TFYQI+LHCLPSGS++  KQ RQL LP+RVLSWD+EVHA LF+H+V G
Sbjct: 363 VDMDGVHVMQRDTFYQILLHCLPSGSQNGGKQGRQLGLPFRVLSWDSEVHAVLFVHKVAG 422

Query: 487 LPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQD 546
           LP GLYFLVRNEDH  +LKK  RS F W KPEGCP DLPLYEL RGD Q+LAK +SCHQD
Sbjct: 423 LPSGLYFLVRNEDHFDDLKKVTRSNFKWAKPEGCPDDLPLYELTRGDFQELAKRISCHQD 482

Query: 547 IAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD 606
           IAGDGCFSLGMVAHFE TL NK+ WMYPRLFWETGVLGQVLYLEAHAVGISATGIGC+FD
Sbjct: 483 IAGDGCFSLGMVAHFEGTLQNKSAWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCYFD 542

Query: 607 DPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA 650
           D VHE+LGL GS FQSLYHFTVGGPV+D+RIMSLPAYPGP +D+
Sbjct: 543 DAVHELLGLRGSSFQSLYHFTVGGPVLDKRIMSLPAYPGPAVDS 586

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506375|ref|XP_003521959.1| PREDICTED: uncharacterized protein LOC100791269 [Glycine max]

 Score =  849 bits (2194), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/587 (72%), Positives = 486/587 (82%), Gaps = 15/587 (2%)

Query: 65  KLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTP 124
           KLSHVLKYH+QTKHSFT YARGPH LDWANQPNPFRRY+S+PL           H    P
Sbjct: 30  KLSHVLKYHNQTKHSFTNYARGPHNLDWANQPNPFRRYLSSPL-------LPLLHSEPNP 82

Query: 125 SSLSNYNHDNAPLYSSLFTSLPPPQP-LTVSSISQLFYDSLALSAWKTTGYSTWSLRVNP 183
            +L+       PLY SLF SLP P P ++ S++SQL +DSL+LSAWK+TG+STWSLRVNP
Sbjct: 83  QTLTL-----TPLYHSLFLSLPSPHPPVSKSTLSQLLFDSLSLSAWKSTGFSTWSLRVNP 137

Query: 184 SSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLV 243
           SSGNLHPTEAY++AP I  + DS FVAHYAPKEH+LELRA+IPS F  F  FFP NSFLV
Sbjct: 138 SSGNLHPTEAYVVAPPIPGVSDSAFVAHYAPKEHSLELRAEIPSGF--FPKFFPPNSFLV 195

Query: 244 GFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL 303
           G SS+FWREAWKYGERAFRYCNHDVGHAI AVAMAAA LGWDVK+L+ +G +ELK LMGL
Sbjct: 196 GLSSVFWREAWKYGERAFRYCNHDVGHAIGAVAMAAAGLGWDVKVLDSLGCEELKSLMGL 255

Query: 304 DIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKG 363
            +FPEF IPS+ ++GKIPEIEFEHPDCV++V+PSG  GFDVN+++L   +  F  LDWKG
Sbjct: 256 HVFPEFEIPSRAVRGKIPEIEFEHPDCVMLVYPSGVGGFDVNWKELSEAILGFDKLDWKG 315

Query: 364 KPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKR 423
           KPN LSKEH CW++IY TAE VKKPLT+   F V+P   SGVC ES+YKG TVREVVRKR
Sbjct: 316 KPNSLSKEHVCWEVIYRTAEAVKKPLTLGERFLVEPLQRSGVCGESAYKGLTVREVVRKR 375

Query: 424 RSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHR 483
           RSAVDMDGVT I+R+ FYQI+LHCLPSG +   +Q R+LALP+R L WDAEVHAALF+HR
Sbjct: 376 RSAVDMDGVTEIERDAFYQILLHCLPSGCQGGGRQGRELALPFRALPWDAEVHAALFVHR 435

Query: 484 VKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC 543
           V GLP+GLYFLVRNEDH  +LKKA+   F+W KPEGCP DLPLYEL R DC+QL+K LSC
Sbjct: 436 VVGLPQGLYFLVRNEDHFDKLKKAMLPDFLWTKPEGCPDDLPLYELLRLDCRQLSKQLSC 495

Query: 544 HQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGC 603
           HQDIA DGCFSLGM+A  EPTL  KNVWMYPRLFWETGVLGQVLYLEAHA+GISATGIGC
Sbjct: 496 HQDIASDGCFSLGMLARMEPTLREKNVWMYPRLFWETGVLGQVLYLEAHAIGISATGIGC 555

Query: 604 FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA 650
           FFD+PVH++LGL GS FQSLYHFTVGGPV+D+RIMSLPAYPGP++DA
Sbjct: 556 FFDNPVHQLLGLKGSTFQSLYHFTVGGPVLDKRIMSLPAYPGPDVDA 602

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357469791|ref|XP_003605180.1| hypothetical protein MTR_4g025130 [Medicago truncatula] gi|355506235|gb|AES87377.1| hypothetical protein MTR_4g025130 [Medicago truncatula]

 Score =  838 bits (2164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/544 (72%), Positives = 455/544 (83%), Gaps = 16/544 (2%)

Query: 65  KLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTP 124
           KL+HVLKYH+QTKH+F  YARGPHGLDWANQPNPFRR++++PL+PL H   + + ++   
Sbjct: 75  KLTHVLKYHNQTKHNFNNYARGPHGLDWANQPNPFRRFLNSPLIPLPHFTPQQEQQS--- 131

Query: 125 SSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPS 184
                      P Y SLF SLP P+P++ S+IS   Y SLALSAWK+T +STWSLRVNPS
Sbjct: 132 -----------PFYPSLFNSLPSPKPISKSTISHFLYHSLALSAWKSTSFSTWSLRVNPS 180

Query: 185 SGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVG 244
           SGNLHPTEAYIIAP+IESL DSPFVAHYAPKEH+LELRAKIPS F  F+ FFP NSFLVG
Sbjct: 181 SGNLHPTEAYIIAPSIESLSDSPFVAHYAPKEHSLELRAKIPSGF--FDKFFPPNSFLVG 238

Query: 245 FSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLD 304
           FSSIFWRE+WKYGER FRYCNHDVGHAI A++MAAA LGWDVK+L+ +G +ELK LMGLD
Sbjct: 239 FSSIFWRESWKYGERGFRYCNHDVGHAIGAISMAAASLGWDVKLLDSLGCEELKFLMGLD 298

Query: 305 IFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGK 364
           +FPEF  P++ +KGKIPEIEFEHPDCV++VFPSG TGFD++Y +L   + EFS LDW GK
Sbjct: 299 VFPEFETPTRAVKGKIPEIEFEHPDCVMLVFPSGVTGFDLDYTELSNAILEFSKLDWIGK 358

Query: 365 PNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRR 424
           PN LSKEH CWDIIY T+E+VKKPLT+ +   VDPF SSG+ SES YKG TV EVVRKRR
Sbjct: 359 PNSLSKEHVCWDIIYRTSEIVKKPLTLGDRLVVDPFQSSGIISESVYKGLTVSEVVRKRR 418

Query: 425 SAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRV 484
           SAVDMDGVT ++RETFYQ++ HCLPSG  + +KQ++QL+LP+R L WDAEVHAALF+HRV
Sbjct: 419 SAVDMDGVTTMERETFYQVLSHCLPSGCEAGKKQRKQLSLPFRALPWDAEVHAALFVHRV 478

Query: 485 KGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCH 544
           +GLP+GLYFLVRN+DH GELKKA+   FVW KPEGCP DLPLYEL R DC++LAK LSCH
Sbjct: 479 EGLPQGLYFLVRNDDHYGELKKAMNPDFVWTKPEGCPDDLPLYELLRSDCRRLAKQLSCH 538

Query: 545 QDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF 604
           QDIA DGCFSLGM+A  E TL  K+VWMYPRLFWETGVLGQVLYLE+HAVGISATGIGCF
Sbjct: 539 QDIASDGCFSLGMLARMESTLREKDVWMYPRLFWETGVLGQVLYLESHAVGISATGIGCF 598

Query: 605 FDDP 608
           FDDP
Sbjct: 599 FDDP 602

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842920|ref|XP_002889341.1| hypothetical protein ARALYDRAFT_333455 [Arabidopsis lyrata subsp. lyrata] gi|297335183|gb|EFH65600.1| hypothetical protein ARALYDRAFT_333455 [Arabidopsis lyrata subsp. lyrata]

 Score =  822 bits (2124), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 424/634 (66%), Positives = 486/634 (76%), Gaps = 44/634 (6%)

Query: 22  LRPSTSVL---RLPNRKLIPAMSFSSSSASKMNTRQVKNPGTTDPRKLSHVLKYHDQTKH 78
           L  STS+L   R P    I AM+FSSSS+S                 L  VL+YH+QTKH
Sbjct: 271 LASSTSLLSIHRTPTSAFISAMTFSSSSSSSS---------------LELVLEYHNQTKH 315

Query: 79  SFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLY 138
           SFT YARGP GLDWANQPNPFRRY+SAPLLPL H PN  D                +PLY
Sbjct: 316 SFTGYARGPRGLDWANQPNPFRRYLSAPLLPLQH-PNHDDDDNDD-----------SPLY 363

Query: 139 SSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAP 198
           S LF SLPPP+P+++++IS LFY SLALSAWKTTG STW LRVNPSSGNLHPTEAY+IAP
Sbjct: 364 SCLFDSLPPPKPISLATISHLFYHSLALSAWKTTGSSTWPLRVNPSSGNLHPTEAYLIAP 423

Query: 199 AIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE 258
            I SL  S FVAHYAPKEH+LE+RA IPS      +FFP+NSFL+G SSIFWREAWKYGE
Sbjct: 424 PIPSLSQSAFVAHYAPKEHSLEVRAHIPS------SFFPENSFLIGISSIFWREAWKYGE 477

Query: 259 RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKG 318
           RAFRYCNHDVGHAIAA+++AAAELGWD+K+L+G G  +LK+LMGL   PEF IPS   KG
Sbjct: 478 RAFRYCNHDVGHAIAALSIAAAELGWDLKLLDGFGADDLKRLMGL---PEFQIPSSSGKG 534

Query: 319 KIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRL--LMEEFSALDWKGKPNLLSKEHFCWD 376
           K+PEIEFEHPDC+L+VFP+G +  D+N + L +   + +F +L+W G PN LSKEH CWD
Sbjct: 535 KLPEIEFEHPDCLLLVFPNGTSRGDLNLDYLGISSALRDFPSLEWNGNPNTLSKEHLCWD 594

Query: 377 IIYSTAEVVKKP-LTIRNAFSVD-PFSSSGVCSESSYKGFTVREVVRKRRSAVDMDGVTA 434
           IIY TA+ V+KP L    + S D PF+SS + S +SY   T R+VVR RRSAVDMD VT 
Sbjct: 595 IIYRTAKAVEKPSLIYSTSSSFDAPFTSSALFSHTSYNKLTARQVVRTRRSAVDMDAVTC 654

Query: 435 IDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWD-AEVHAALFIHRVKGLPKGLYF 493
           ID   FYQI++HCLPSGS   E QK QLALP+R L WD AEVH ALF+HRV GLPKGLYF
Sbjct: 655 IDMSAFYQILMHCLPSGSTRGEPQKEQLALPFRALPWDTAEVHLALFVHRVLGLPKGLYF 714

Query: 494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCF 553
           LVRNEDHL +LK A R  F W+KP+GCP DLPLY+L  GDCQ+LAKGLSCHQDIAGDGCF
Sbjct: 715 LVRNEDHLSDLKTATRPEFEWKKPDGCPADLPLYKLTEGDCQKLAKGLSCHQDIAGDGCF 774

Query: 554 SLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL 613
           SLGMVA FEP L  K  W+YPRLFWETGV+GQVLYLEAHA+GISATGIGC+FDDPVHEVL
Sbjct: 775 SLGMVARFEPALREKGSWVYPRLFWETGVIGQVLYLEAHAMGISATGIGCYFDDPVHEVL 834

Query: 614 GLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPN 647
           G+  S FQSLYHFTVGGPVVD+RIM+LPAYPGP 
Sbjct: 835 GIKDSSFQSLYHFTVGGPVVDKRIMTLPAYPGPT 868

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|22329282|ref|NP_171704.2| nitroreductase-like protein [Arabidopsis thaliana] gi|2317902|gb|AAC24366.1| hypothetical protein [Arabidopsis thaliana] gi|17979093|gb|AAL49814.1| unknown protein [Arabidopsis thaliana] gi|21689753|gb|AAM67520.1| unknown protein [Arabidopsis thaliana] gi|332189246|gb|AEE27367.1| nitroreductase-like protein [Arabidopsis thaliana]

 Score =  808 bits (2086), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/630 (65%), Positives = 485/630 (76%), Gaps = 29/630 (4%)

Query: 27  SVLRLPNRKLIPAMSFSSSSASKMNTRQVKNPGTTDPRK-LSHVLKYHDQTKHSFTKYAR 85
           S+ R P    I AM+FSSSS+S  ++  V+NP   D    L  VLKYH+QTKHS   YAR
Sbjct: 29  SIPRTPKSAFIFAMTFSSSSSSSSSSSSVENPNKDDSSSSLELVLKYHNQTKHSLNGYAR 88

Query: 86  GPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSL 145
           GP GLDWANQPNPFRRY+SAPLLPL H  +  D            +  ++PLYS+LF SL
Sbjct: 89  GPRGLDWANQPNPFRRYLSAPLLPLQHPNHDID------------DDSDSPLYSTLFDSL 136

Query: 146 PPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCD 205
           PPP+P+++ +IS LFY SLALSAWKTTG STW LRVNPSSGNLHPTEAY+IAP I SL  
Sbjct: 137 PPPKPISLPTISHLFYHSLALSAWKTTGSSTWPLRVNPSSGNLHPTEAYLIAPPIPSLSQ 196

Query: 206 SPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCN 265
           S FV+HYAPKEH+LE+RA IPS F  F NFFP+NSFL+G SSIFWREAWKYGERAFRYCN
Sbjct: 197 SAFVSHYAPKEHSLEVRAHIPSSF--FPNFFPENSFLIGISSIFWREAWKYGERAFRYCN 254

Query: 266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKIPEIEF 325
           HDVGHAIAA+++AAA+LGWD+K+L+  G  +LK+LMGL   PEF +P    K ++PEIEF
Sbjct: 255 HDVGHAIAALSIAAADLGWDLKLLDAFGADDLKRLMGL---PEFQLPEGKGKAELPEIEF 311

Query: 326 EHPDCVLVVFPSGAT--GFDVNYEKLRLLMEEFSALDWKGKPNLLSKEHFCWDIIYSTAE 383
           EHPDC+L+VFP+G +    +++Y  +   + +F +L+W G PN LSKEH CWDIIY TA+
Sbjct: 312 EHPDCLLLVFPNGTSREHLNLDYLAISSALRDFPSLEWTGNPNTLSKEHLCWDIIYRTAK 371

Query: 384 VVKKPLTI----RNAFSVDPFSSS-GVCSESSYKGFTVREVVRKRRSAVDMDGVTAIDRE 438
            V+KP  I     ++  V  F+SS  + S SSY   TVR+VVR RRSAVDMD VT ID  
Sbjct: 372 AVEKPPLIYSTSSSSIDVASFTSSRALFSHSSYNKLTVRQVVRTRRSAVDMDAVTCIDMS 431

Query: 439 TFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWD-AEVHAALFIHRVKGLPKGLYFLVRN 497
           +FYQ+++HCLPS   + E QK QLALP+R L WD AEVH ALF+HRV GLPKGLY LVRN
Sbjct: 432 SFYQMLMHCLPS---TGESQKEQLALPFRALPWDTAEVHLALFVHRVSGLPKGLYLLVRN 488

Query: 498 EDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGM 557
           EDHL +LK A R  F W KP+GCP +LPLY+LA GDCQ+LAKGLSCHQDIAGDGCFSLGM
Sbjct: 489 EDHLSDLKTATRPEFEWTKPDGCPDNLPLYKLAEGDCQRLAKGLSCHQDIAGDGCFSLGM 548

Query: 558 VAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTG 617
           +A FEP L  K  WMYPRLFWETGV+GQVLYLEAHA+GISATGIGC+FDDPVHEVLG+  
Sbjct: 549 IARFEPALREKGSWMYPRLFWETGVVGQVLYLEAHAMGISATGIGCYFDDPVHEVLGIND 608

Query: 618 SKFQSLYHFTVGGPVVDRRIMSLPAYPGPN 647
           S FQSLYHFTVGGPVVD+RIM+LPAYPGP 
Sbjct: 609 SSFQSLYHFTVGGPVVDKRIMTLPAYPGPT 638

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089192|emb|CBI38895.3| unnamed protein product [Vitis vinifera]

 Score =  778 bits (2009), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/584 (66%), Positives = 445/584 (76%), Gaps = 67/584 (11%)

Query: 67  SHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSS 126
           + VLKYH+QTKHSFT YARGP GLDWANQP PFRR+ SA                  P  
Sbjct: 20  AQVLKYHNQTKHSFTNYARGPRGLDWANQPKPFRRFDSA---------------PLVPLL 64

Query: 127 LSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSG 186
                +   P YSS+F +LPPP+P++ S+ISQLF+DSLA+SAWKTTG+STWSLRVNPSSG
Sbjct: 65  HPPPPNQTPPPYSSVFLNLPPPKPISKSTISQLFFDSLAISAWKTTGFSTWSLRVNPSSG 124

Query: 187 NLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFS 246
           NLHPTE+YIIAPAIES+ DS FVAHYAPKEH+LE                          
Sbjct: 125 NLHPTESYIIAPAIESVSDSAFVAHYAPKEHSLE-------------------------- 158

Query: 247 SIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIF 306
                 AWKYGERAFRYCNHDVGHAIAAV+MAAAELGWDVK+L+G+GY++LKKLMGL+IF
Sbjct: 159 ------AWKYGERAFRYCNHDVGHAIAAVSMAAAELGWDVKVLDGLGYEDLKKLMGLEIF 212

Query: 307 PEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPN 366
           PEF IP++P+KGK P                    F+VNY +L + +  FS L WKGKPN
Sbjct: 213 PEFEIPARPVKGKFP--------------------FNVNYRELSMAISRFSELKWKGKPN 252

Query: 367 LLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFTVREVVRKRRSA 426
           +LS+EH CWDIIY TAE VKKPL I + FS+DPF SS + +ESSYK  TV EVVRKRRSA
Sbjct: 253 VLSREHICWDIIYRTAEAVKKPLMIEHKFSIDPFHSSRLFNESSYKNLTVSEVVRKRRSA 312

Query: 427 VDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKG 486
           VDMDGV  + R+TFYQI+LHCLPSGS++  KQ RQL LP+RVLSWD+EVHA LF+H+V G
Sbjct: 313 VDMDGVHVMQRDTFYQILLHCLPSGSQNGGKQGRQLGLPFRVLSWDSEVHAVLFVHKVAG 372

Query: 487 LPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQD 546
           LP GLYFLVRNEDH  +LKK  RS F W KPEGCP DLPLYEL RGD Q+LAK +SCHQD
Sbjct: 373 LPSGLYFLVRNEDHFDDLKKVTRSNFKWAKPEGCPDDLPLYELTRGDFQELAKRISCHQD 432

Query: 547 IAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD 606
           IAGDGCFSLGMVAHFE TL NK+ WMYPRLFWETGVLGQVLYLEAHAVGISATGIGC+FD
Sbjct: 433 IAGDGCFSLGMVAHFEGTLQNKSAWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCYFD 492

Query: 607 DPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGPNIDA 650
           D VHE+LGL GS FQSLYHFTVGGPV+D+RIMSLPAYPGP +D+
Sbjct: 493 DAVHELLGLRGSSFQSLYHFTVGGPVLDKRIMSLPAYPGPAVDS 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
TAIR|locus:2205639	642	AT1G02020 [Arabidopsis thalian	0.926	0.937	0.640	9.4e-217
UNIPROTKB|Q60C87	529	MCA0222 "Putative uncharacteri	0.418	0.514	0.406	4.5e-84
UNIPROTKB|Q74EZ0	252	GSU0819 "FMN-dependent polypep	0.24	0.619	0.241	0.0005
TIGR_CMR|GSU_0819	252	GSU_0819 "conserved hypothetic	0.24	0.619	0.241	0.0005

TAIR|locus:2205639 AT1G02020 [Arabidopsis thaliana (taxid:3702)]

 Score = 2094 (742.2 bits), Expect = 9.4e-217, P = 9.4e-217
 Identities = 406/634 (64%), Positives = 473/634 (74%)

Query:    25 STSVL---RLPNRKLIPAMXXXXXXXXKMNTRQVKNPGTTDPRK-LSHVLKYHDQTKHSF 80
             STS+L   R P    I AM          ++  V+NP   D    L  VLKYH+QTKHS 
Sbjct:    24 STSLLSIPRTPKSAFIFAMTFSSSSSSSSSSSSVENPNKDDSSSSLELVLKYHNQTKHSL 83

Query:    81 TKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSS 140
               YARGP GLDWANQPNPFRRY+SAPLLPL H PN   H     S        ++PLYS+
Sbjct:    84 NGYARGPRGLDWANQPNPFRRYLSAPLLPLQH-PN---HDIDDDS--------DSPLYST 131

Query:   141 LFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI 200
             LF SLPPP+P+++ +IS LFY SLALSAWKTTG STW LRVNPSSGNLHPTEAY+IAP I
Sbjct:   132 LFDSLPPPKPISLPTISHLFYHSLALSAWKTTGSSTWPLRVNPSSGNLHPTEAYLIAPPI 191

Query:   201 ESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA 260
              SL  S FV+HYAPKEH+LE+RA IPS F  F NFFP+NSFL+G SSIFWREAWKYGERA
Sbjct:   192 PSLSQSAFVSHYAPKEHSLEVRAHIPSSF--FPNFFPENSFLIGISSIFWREAWKYGERA 249

Query:   261 FRYCNHDVGHXXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
             FRYCNHDVGH          +LGWD+K+L+  G  +LK+LMGL   PEF +P    K ++
Sbjct:   250 FRYCNHDVGHAIAALSIAAADLGWDLKLLDAFGADDLKRLMGL---PEFQLPEGKGKAEL 306

Query:   321 PEIEFEHPDCVLVVFPSGATGFDVNYEKLRL--LMEEFSALDWKGKPNLLSKEHFCWDII 378
             PEIEFEHPDC+L+VFP+G +   +N + L +   + +F +L+W G PN LSKEH CWDII
Sbjct:   307 PEIEFEHPDCLLLVFPNGTSREHLNLDYLAISSALRDFPSLEWTGNPNTLSKEHLCWDII 366

Query:   379 YSTAEVVKKPLTI--RNAFSVD--PFSSS-GVCSESSYKGFTVREVVRKRRSAVDMDGVT 433
             Y TA+ V+KP  I   ++ S+D   F+SS  + S SSY   TVR+VVR RRSAVDMD VT
Sbjct:   367 YRTAKAVEKPPLIYSTSSSSIDVASFTSSRALFSHSSYNKLTVRQVVRTRRSAVDMDAVT 426

Query:   434 AIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWD-AEVHAALFIHRVKGLPKGLY 492
              ID  +FYQ+++HCLPS   + E QK QLALP+R L WD AEVH ALF+HRV GLPKGLY
Sbjct:   427 CIDMSSFYQMLMHCLPS---TGESQKEQLALPFRALPWDTAEVHLALFVHRVSGLPKGLY 483

Query:   493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGC 552
              LVRNEDHL +LK A R  F W KP+GCP +LPLY+LA GDCQ+LAKGLSCHQDIAGDGC
Sbjct:   484 LLVRNEDHLSDLKTATRPEFEWTKPDGCPDNLPLYKLAEGDCQRLAKGLSCHQDIAGDGC 543

Query:   553 FSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEV 612
             FSLGM+A FEP L  K  WMYPRLFWETGV+GQVLYLEAHA+GISATGIGC+FDDPVHEV
Sbjct:   544 FSLGMIARFEPALREKGSWMYPRLFWETGVVGQVLYLEAHAMGISATGIGCYFDDPVHEV 603

Query:   613 LGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYPGP 646
             LG+  S FQSLYHFTVGGPVVD+RIM+LPAYPGP
Sbjct:   604 LGINDSSFQSLYHFTVGGPVVDKRIMTLPAYPGP 637

GO:0005634 "nucleus" evidence=ISM

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=ISS

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016657 "oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q60C87 MCA0222 "Putative uncharacterized protein" [Methylococcus capsulatus str. Bath (taxid:243233)]

 Score = 501 (181.4 bits), Expect = 4.5e-84, Sum P(2) = 4.5e-84
 Identities = 118/290 (40%), Positives = 151/290 (52%)

Query:   356 FSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFS-SSGVCSESSYKGF 414
             F  L W GK N+L         +Y    + +     R +    P    +     +     
Sbjct:   253 FGNLKWAGKANVLDPHP-----MYHWPVIDEVADASRGSVQATPSPPETDYPPRADLPAV 307

Query:   415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAE 474
                 V+R+RRSA   D    + R  FY ++   L           R  A P+ V      
Sbjct:   308 AAAAVIRQRRSAQRFDRRFELVRNDFYALLDALLA----------RPCA-PWDVWDLTPA 356

Query:   475 VHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDC 534
             +H  LF+HRV GL  GLY L R+ D   +L+ A+R  F W +P  CPR LPL+ LA G C
Sbjct:   357 LHPVLFVHRVTGLAPGLYALPRSRDAETKLRAALRPDFAWTRPSDCPRHLPLFLLAEGGC 416

Query:   535 QQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAV 594
               LA+ + CHQ IA D  F+LGM+A FE  L N   W Y +L WE G+LGQ LYLEA A 
Sbjct:   417 GPLARTVCCHQAIAADSAFALGMLAEFEGIL-NAAPWRYRQLHWEAGLLGQALYLEAEAR 475

Query:   595 GISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLPAYP 644
             G+  TGIGC+FDD  HE+LGL+G  FQSLYHFTVG P+ D RI +   YP
Sbjct:   476 GLRGTGIGCYFDDAFHELLGLSGKAFQSLYHFTVGRPLDDPRITTEAPYP 525

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q74EZ0 GSU0819 "FMN-dependent polypeptide cyclic thioester oxidase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 41/170 (24%), Positives = 67/170 (39%)

Query:   162 DSLALSAWKTTGY-----STWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKE 216
             + LA   W T G          LR  PS+G  HP E Y+   ++  +   P V  Y P +
Sbjct:    86 EELAFLLWATQGVRARLNEAAVLRTVPSAGCRHPFETYLAILSVTGI--EPAVYRYLPLD 143

Query:   217 HALELRAKIPSRFDLFN------NFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGH 270
             HAL L  ++P              F  + +    +++I  R  W+Y E +++    D GH
Sbjct:   144 HALVLEREVPDLAATVTAAAHGQRFAGEAAVTFVWTAIPARTEWRYAEASYKVIALDAGH 203

Query:   271 XXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
                        +G     +         +L+G+D   EF +   P+ GK+
Sbjct:   204 VCQNLYLACEAIGAGTCAIAAYRQALADELLGVDGREEFTVYLAPV-GKV 252

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_0819 GSU_0819 "conserved hypothetical protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 116 (45.9 bits), Expect = 0.00050, P = 0.00050
 Identities = 41/170 (24%), Positives = 67/170 (39%)

Query:   162 DSLALSAWKTTGY-----STWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKE 216
             + LA   W T G          LR  PS+G  HP E Y+   ++  +   P V  Y P +
Sbjct:    86 EELAFLLWATQGVRARLNEAAVLRTVPSAGCRHPFETYLAILSVTGI--EPAVYRYLPLD 143

Query:   217 HALELRAKIPSRFDLFN------NFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGH 270
             HAL L  ++P              F  + +    +++I  R  W+Y E +++    D GH
Sbjct:   144 HALVLEREVPDLAATVTAAAHGQRFAGEAAVTFVWTAIPARTEWRYAEASYKVIALDAGH 203

Query:   271 XXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPIKGKI 320
                        +G     +         +L+G+D   EF +   P+ GK+
Sbjct:   204 VCQNLYLACEAIGAGTCAIAAYRQALADELLGVDGREEFTVYLAPV-GKV 252


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.138   0.436    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      650       632   0.00092  120 3  11 22  0.38    34
                                                     36  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  629 (67 KB)
  Total size of DFA:  396 KB (2191 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  51.88u 0.13s 52.01t   Elapsed:  00:00:02
  Total cpu time:  51.89u 0.13s 52.02t   Elapsed:  00:00:02
  Start:  Tue May 21 14:49:27 2013   End:  Tue May 21 14:49:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001336 hypothetical protein (598 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	650
cd02142	180	cd02142, mcbC-like_oxidoreductase, This family is	9e-31
cd02142	180	cd02142, mcbC-like_oxidoreductase, This family is	2e-29
TIGR03605	173	TIGR03605, antibiot_sagB, SagB-type dehydrogenase	3e-19
pfam00881	163	pfam00881, Nitroreductase, Nitroreductase family	5e-07
TIGR03605	173	TIGR03605, antibiot_sagB, SagB-type dehydrogenase	1e-06

>gnl|CDD|239056 cd02142, mcbC-like_oxidoreductase, This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring

 Score =  118 bits (297), Expect = 9e-31
 Identities = 50/166 (30%), Positives = 72/166 (43%), Gaps = 7/166 (4%)

Query: 156 ISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPK 215
           +  L    L LS           LR  PS+G L+P E Y++   +E L  +  + HY P 
Sbjct: 15  LPSLLGLLLLLSRVLGLASGLLPLRTYPSAGALYPIEVYLVVGRVEGL--AAGLYHYDPL 72

Query: 216 EHALELRAKIPSRFDL-----FNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGH 270
           EH+LEL      R  L        F    +F +   + F R  WKYGERA+RY   + GH
Sbjct: 73  EHSLELLRAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRYALMEAGH 132

Query: 271 AIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI 316
               + +AA  LG     +       L +L+GLD   E  + +  +
Sbjct: 133 LGQNLYLAATALGLGTCAIGAFDDDALAELLGLDGLEEQPLYAFTV 178

These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides. Length = 180

>gnl|CDD|239056 cd02142, mcbC-like_oxidoreductase, This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring

 Score =  114 bits (288), Expect = 2e-29
 Identities = 51/157 (32%), Positives = 65/157 (41%), Gaps = 25/157 (15%)

Query: 474 EVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD 533
            +   L + RV+GL  GLY                            P +  L  L  GD
Sbjct: 49  PIEVYLVVGRVEGLAAGLYH-------------------------YDPLEHSLELLRAGD 83

Query: 534 CQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHA 593
            +   +  + +Q  A D  FSL +VA F           Y     E G LGQ LYL A A
Sbjct: 84  LRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRYALMEAGHLGQNLYLAATA 143

Query: 594 VGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGG 630
           +G+    IG F DD + E+LGL G + Q LY FTVG 
Sbjct: 144 LGLGTCAIGAFDDDALAELLGLDGLEEQPLYAFTVGR 180

These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides. Length = 180

>gnl|CDD|188352 TIGR03605, antibiot_sagB, SagB-type dehydrogenase domain

 Score = 85.0 bits (211), Expect = 3e-19
 Identities = 52/168 (30%), Positives = 73/168 (43%), Gaps = 10/168 (5%)

Query: 152 TVSSISQLFYDSLALSAWKTTGYSTWS-LRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA 210
           T+  +SQL + S  + + K          R  PS G L+P E Y+    IE L D   V 
Sbjct: 1   TLEELSQLLWYSAGVRSIKLPYNDGILFRRPYPSGGGLYPLEIYLYVKNIEGLPDG--VY 58

Query: 211 HYAPKEHALELRAKIPSRFDLF---NNFFPKN----SFLVGFSSIFWREAWKYGERAFRY 263
           HY P+EH L L        D F        +N      ++  ++ FW+  WKYG RA+R 
Sbjct: 59  HYDPEEHRLILIRAGEENVDAFLVNALLNAENANPPPVIIFITARFWKNFWKYGNRAYRL 118

Query: 264 CNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVI 311
              DVG  I    + A  LG     + G     + +L+GLD   E V+
Sbjct: 119 ALLDVGIIIQNFYLVATALGLGSCAIGGFDDDYIAELLGLDGIEEHVV 166

SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases. Length = 173

>gnl|CDD|216169 pfam00881, Nitroreductase, Nitroreductase family

 Score = 49.7 bits (119), Expect = 5e-07
 Identities = 33/124 (26%), Positives = 50/124 (40%), Gaps = 6/124 (4%)

Query: 183 PSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNS-F 241
           PS+GNL P   Y++    E           A      +  A +    DL N     ++  
Sbjct: 31  PSAGNLQPWRFYVVTDK-ELRYK--LAKLLAELLPEEDAPALLLVLADLGNQPLLADAPV 87

Query: 242 LVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG-MGYKELKKL 300
           L+   S       K GE+A+RY   D G A   + +AA  LG     + G     E+++L
Sbjct: 88  LIVVRSDRAAR-AKSGEKAYRYALLDAGLAAQNLLLAATALGLGSCWIGGFDAAAEVREL 146

Query: 301 MGLD 304
           +GL 
Sbjct: 147 LGLP 150

The nitroreductase family comprises a group of FMN- or FAD-dependent and NAD(P)H-dependent enzymes able to metabolize nitrosubstituted compounds. Length = 163

>gnl|CDD|188352 TIGR03605, antibiot_sagB, SagB-type dehydrogenase domain

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 38/163 (23%), Positives = 61/163 (37%), Gaps = 37/163 (22%)

Query: 474 EVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD 533
            +   L++  ++GLP G+Y                            P +  L  +  G+
Sbjct: 40  PLEIYLYVKNIEGLPDGVYHY-------------------------DPEEHRLILIRAGE 74

Query: 534 C--QQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP----RL-FWETGVLGQV 586
                       + + A      + + A F      KN W Y     RL   + G++ Q 
Sbjct: 75  ENVDAFLVNALLNAENANPPPVIIFITARF-----WKNFWKYGNRAYRLALLDVGIIIQN 129

Query: 587 LYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVG 629
            YL A A+G+ +  IG F DD + E+LGL G +   +  F VG
Sbjct: 130 FYLVATALGLGSCAIGGFDDDYIAELLGLDGIEEHVVGVFPVG 172

SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases. Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	650
TIGR03605	173	antibiot_sagB SagB-type dehydrogenase domain. SagB	100.0
cd02142	180	mcbC-like_oxidoreductase This family is the oxydas	99.94
TIGR03605	173	antibiot_sagB SagB-type dehydrogenase domain. SagB	99.92
cd02142	180	mcbC-like_oxidoreductase This family is the oxydas	99.91
PRK10765	240	nitroreductase A; Provisional	99.83
cd02149	157	NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductas	99.83
cd02148	185	Nitroreductase_5 Nitroreductase-like family 5. A s	99.82
PRK05365	195	malonic semialdehyde reductase; Provisional	99.82
PRK11053	217	dihydropteridine reductase; Provisional	99.81
cd02151	162	NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreducta	99.81
cd02138	181	Nitroreductase_2 Nitroreductase-like family 2. A s	99.8
cd02146	229	NfsA_FRP This family contains NADPH-dependent flav	99.8
cd02137	148	Nitroreductase_1 Nitroreductase-like family 1. A s	99.79
cd02139	164	Nitroreductase_3 Nitroreductase-like family 3. A s	99.79
cd02150	166	NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreducta	99.79
cd03370	156	NADH_oxidase NADPH_oxidase. Nitroreductase family	99.79
cd02144	193	iodotyrosine_dehalogenase Iodotyrosine dehalogenas	99.78
PRK10828	183	putative oxidoreductase; Provisional	99.78
PF00881	165	Nitroreductase: Nitroreductase family; InterPro: I	99.78
cd02145	196	BluB Subfamily of the nitroreductase family that i	99.78
TIGR03553	194	F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-	99.77
TIGR02476	205	BluB cob(II)yrinic acid a,c-diamide reductase. The	99.77
cd02136	178	Nitroreductase Nitroreductase family. Members of t	99.74
cd02135	160	Arsenite_oxidase Nitroreductase-like family which	99.73
cd02143	147	NADH_nitroreductase Nitroreductase family. Members	99.69
PRK13294	448	F420-0--gamma-glutamyl ligase; Provisional	99.68
cd02140	192	Nitroreductase_4 Nitroreductase-like family 4. A s	99.68
PF00881	165	Nitroreductase: Nitroreductase family; InterPro: I	99.65
cd02062	122	Nitro_FMN_reductase Proteins of this family cataly	99.64
COG0778	207	NfnB Nitroreductase [Energy production and convers	99.57
cd02149	157	NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductas	99.56
cd02139	164	Nitroreductase_3 Nitroreductase-like family 3. A s	99.56
PRK10765	240	nitroreductase A; Provisional	99.52
cd02151	162	NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreducta	99.51
cd02138	181	Nitroreductase_2 Nitroreductase-like family 2. A s	99.5
cd02150	166	NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreducta	99.5
cd02148	185	Nitroreductase_5 Nitroreductase-like family 5. A s	99.49
cd02137	148	Nitroreductase_1 Nitroreductase-like family 1. A s	99.49
cd02146	229	NfsA_FRP This family contains NADPH-dependent flav	99.47
cd03370	156	NADH_oxidase NADPH_oxidase. Nitroreductase family	99.46
PRK05365	195	malonic semialdehyde reductase; Provisional	99.45
cd02062	122	Nitro_FMN_reductase Proteins of this family cataly	99.44
cd02135	160	Arsenite_oxidase Nitroreductase-like family which	99.43
cd02144	193	iodotyrosine_dehalogenase Iodotyrosine dehalogenas	99.42
cd02136	178	Nitroreductase Nitroreductase family. Members of t	99.41
cd02145	196	BluB Subfamily of the nitroreductase family that i	99.39
TIGR02476	205	BluB cob(II)yrinic acid a,c-diamide reductase. The	99.36
PRK10828	183	putative oxidoreductase; Provisional	99.35
PRK11053	217	dihydropteridine reductase; Provisional	99.35
cd02143	147	NADH_nitroreductase Nitroreductase family. Members	99.32
TIGR03553	194	F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-	99.31
cd02140	192	Nitroreductase_4 Nitroreductase-like family 4. A s	99.18
PRK13294	448	F420-0--gamma-glutamyl ligase; Provisional	99.14
COG0778	207	NfnB Nitroreductase [Energy production and convers	99.0
PRK07877	722	hypothetical protein; Provisional	98.77
PRK14851	679	hypothetical protein; Provisional	98.35
PF14512	206	TM1586_NiRdase: Putative TM nitroreductase; PDB: 1	97.59
PRK14852	989	hypothetical protein; Provisional	97.36
PRK14851	679	hypothetical protein; Provisional	96.62
COG3560	200	FMR2 Predicted oxidoreductase related to nitroredu	95.25
PRK07877	722	hypothetical protein; Provisional	95.19
PRK14852	989	hypothetical protein; Provisional	88.37
PF14512	206	TM1586_NiRdase: Putative TM nitroreductase; PDB: 1	83.45
KOG3936	100	consensus Nitroreductases [Energy production and c	83.34

>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain

Probab=100.00  E-value=2.5e-33  Score=272.61  Aligned_cols=163  Identities=29%  Similarity=0.425  Sum_probs=146.0

Q ss_pred             CHHHHHHHHHHhcccccccccCCCccc-ccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCC--ch
Q 006333          152 TVSSISQLFYDSLALSAWKTTGYSTWS-LRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIP--SR  228 (650)
Q Consensus       152 ~~~~Ls~lL~~s~g~~~~~~~g~~~~~-~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~--~~  228 (650)
                      ++++|++|||.++|++.++...++.+. +|.+||+||+||+|+|+++++|+||++  |+|||+|.+|+|+++...+  ..
T Consensus         1 ~~~~ls~lL~~~~g~~~~~~~~~~~~~~~r~~pSaG~l~p~~~y~~~~~v~gl~~--G~Y~Y~p~~h~L~~~~~~~~~~~   78 (173)
T TIGR03605         1 TLEELSQLLWYSAGVKEIKLPYNDEILFRRSYPSGGGLYPLEIYLYVKNIEGLPD--GIYHYDPEEHRLILIRAGEENVD   78 (173)
T ss_pred             CHHHHHHHHHHhcCCcccccCCCCccceeeecCCCcccCcEEEEEEEeEeCCCCC--eeEEEcCCCCEEEEeeCCccCHH
Confidence            478999999999999988765555553 599999999999999999999999995  9999999999999988763  22


Q ss_pred             hc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          229 FD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       229 ~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                      ..    +. ++++.+|+++|+++++++|..|||++|+||++++|+|+++||++++|+++|+++|++++|+++.|+++|||
T Consensus        79 ~~l~~~~~~~~~~~~A~~~iv~~~~~~~~~~~y~~~~~~~~~~daG~~~qnl~LaA~~~Glgs~~i~~f~~~~v~~~L~l  158 (173)
T TIGR03605        79 AFLVNALLNTENANTPPIIIFIVARFWKNFWKYGNRGYRLALLDSGIIIQNFYLVATALGLGSCAIGGFDDDYIAELLGL  158 (173)
T ss_pred             HHHHHHHhCccccccCCEEEEEEEEecccHHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEccccHHHHHHHhCc
Confidence            21    12 35788999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      |+..|.++++++|
T Consensus       159 ~~~~~~~~~~~~v  171 (173)
T TIGR03605       159 DGIEESVVGVFPV  171 (173)
T ss_pred             CCccceeEEEEec
Confidence            9988889888887

SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.

>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring

Probab=99.94  E-value=1.8e-26  Score=224.86  Aligned_cols=166  Identities=31%  Similarity=0.433  Sum_probs=144.2

Q ss_pred             CCCCCCCCC-HHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPPQPLT-VSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~~pl~-~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+..++++ +..++.+++...+..      .....+|.+||+||+||+++|+++.+|+||++  |+|||+|.+|+|+++
T Consensus         8 r~f~~~~~~~~~~~~~~l~~~~~~~------~~~~~~r~~pS~g~l~~~~~y~~~~~v~gl~~--G~Y~y~~~~~~L~~~   79 (180)
T cd02142           8 RRFLDEPLPSLLGLLLLLSRVLGLA------SGLLPLRTYPSAGALYPIEVYLVVGRVEGLAA--GLYHYDPLEHSLELL   79 (180)
T ss_pred             cccCCCCCchHHHHHHHHHHhcccc------CCCcccccCCCCCCCcceEEEEEEcccCCCCC--ccEEEcCCCCEEEEE
Confidence            356788888 889999998754433      23456899999999999999999999999995  999999999999998


Q ss_pred             ccCCchhc-----cccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHH
Q 006333          223 AKIPSRFD-----LFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKEL  297 (650)
Q Consensus       223 ~~~~~~~~-----~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l  297 (650)
                      ...+....     ..+.++.+++++|+++++.++..||||+++||++++|+|+++|+++++|+++|+++|++++|+++.+
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~y~~~~~~~~~~d~G~~~q~l~l~a~~~glg~~~~~~~~~~~v  159 (180)
T cd02142          80 RAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRYALMEAGHLGQNLYLAATALGLGTCAIGAFDDDAL  159 (180)
T ss_pred             ecCcHHHHHHHHHcCChhhhCCCEEEEEEEeecHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceEEEEEcHHHH
Confidence            76544221     1245788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCCCcceeeecccc
Q 006333          298 KKLMGLDIFPEFVIPSKPIK  317 (650)
Q Consensus       298 ~~lLgLd~~~E~v~~~~~i~  317 (650)
                      +++|||++..|.++++++++
T Consensus       160 ~~~l~l~~~~~~~~~~~~vG  179 (180)
T cd02142         160 AELLGLDGLEEQPLYAFTVG  179 (180)
T ss_pred             HHHhCCCCcccceEEEEecc
Confidence            99999998667788888773

These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.

>TIGR03605 antibiot_sagB SagB-type dehydrogenase domain

Probab=99.92  E-value=1.3e-24  Score=211.56  Aligned_cols=168  Identities=23%  Similarity=0.312  Sum_probs=137.1

Q ss_pred             CHHHHHHHHHHhccCCCcchhhhhcccCCCcccccc---cceEEEEEEEecccCCCCeeeeecCCcchhhHHHHHhhccc
Q 006333          436 DRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSW---DAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGF  512 (650)
Q Consensus       436 ~~e~l~~iL~~a~Ps~~~~~~~~g~~~~~P~~~~~~---~~~v~l~v~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~  512 (650)
                      +.++|++||+.+.  +++...........-.|..|+   ...+++|++|++|+||++|+|+|+|..+.            
T Consensus         1 ~~~~ls~lL~~~~--g~~~~~~~~~~~~~~~r~~pSaG~l~p~~~y~~~~~v~gl~~G~Y~Y~p~~h~------------   66 (173)
T TIGR03605         1 TLEELSQLLWYSA--GVKEIKLPYNDEILFRRSYPSGGGLYPLEIYLYVKNIEGLPDGIYHYDPEEHR------------   66 (173)
T ss_pred             CHHHHHHHHHHhc--CCcccccCCCCccceeeecCCCcccCcEEEEEEEeEeCCCCCeeEEEcCCCCE------------
Confidence            4689999999887  322111000000000133332   35799999999999999999999998765            


Q ss_pred             ccCCCCCCCCCCcccccccc--cHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHH
Q 006333          513 VWEKPEGCPRDLPLYELARG--DCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLE  590 (650)
Q Consensus       513 ~w~~~~~~p~~l~l~~l~~g--d~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~La  590 (650)
                                   |..+..+  |++..+...+.+|.++.+|+++|++++++++...+||+++||+.++|+|+++|||+|+
T Consensus        67 -------------L~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~iv~~~~~~~~~~~y~~~~~~~~~~daG~~~qnl~La  133 (173)
T TIGR03605        67 -------------LILIRAGEENVDAFLVNALLNTENANTPPIIIFIVARFWKNFWKYGNRGYRLALLDSGIIIQNFYLV  133 (173)
T ss_pred             -------------EEEeeCCccCHHHHHHHHHhCccccccCCEEEEEEEEecccHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence                         4445566  7888788778889999999999999999999999999999999999999999999999


Q ss_pred             HHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccc
Q 006333          591 AHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       591 A~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      |+++|+++|+||+|++++|+++|||++.++.+++.++||+
T Consensus       134 A~~~Glgs~~i~~f~~~~v~~~L~l~~~~~~~~~~~~vG~  173 (173)
T TIGR03605       134 ATALGLGSCAIGGFDDDYIAELLGLDGIEESVVGVFPVGR  173 (173)
T ss_pred             HHHcCCCeEEEccccHHHHHHHhCcCCccceeEEEEecCC
Confidence            9999999999999999999999999986778999999995

SagB of Sterptococcus pyogenes participates in the maturation of streptolysin S from a ribosomally produced precursor polypeptide. Chemically similar systems operate on highly diverse sets of bacteriocin precursors in numerous other bacteria. This model describes a domain within SgaB and homologous regions from other proteins, many of which appear to be involved in biosynthesis of secondary metabolites. While some substrates may be intermediates in non-ribosomal peptide syntheses, others are involved in heterocycle-containing bacteriocin biosynthesis, and can be found near SgaC-like (see TIGR03603, cyclodehydratase) and SgaD-like (see TIGR03604, "docking") proteins. Members of this domain family are heterogeneous in length, as many have a partial second copy of the domain represented here. The incomplete second domain scores below the cutoffs to this model in most cases.

>cd02142 mcbC-like_oxidoreductase This family is the oxydase domain of NRPS (non-ribosomal peptide synthetase) and other proteins that modify polypeptides by cyclizing a thioester to form a ring

Probab=99.91  E-value=5.2e-24  Score=207.46  Aligned_cols=176  Identities=34%  Similarity=0.434  Sum_probs=148.6

Q ss_pred             HHhcCCCCCCCCCCCCC-HHHHHHHHHHhccCCCcchhhhhcccCCCcccccc---cceEEEEEEEecccCCCCeeeeec
Q 006333          420 VRKRRSAVDMDGVTAID-RETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSW---DAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       420 I~~RRS~R~F~~~~~I~-~e~l~~iL~~a~Ps~~~~~~~~g~~~~~P~~~~~~---~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      |.+|||+|.|.+ .+|+ ...+..++....+...         ...+.+..|.   ...+.+|+++++|+||++|+|+|+
T Consensus         1 ~~~R~S~r~f~~-~~~~~~~~~~~~l~~~~~~~~---------~~~~~r~~pS~g~l~~~~~y~~~~~v~gl~~G~Y~y~   70 (180)
T cd02142           1 LLRRRSTRRFLD-EPLPSLLGLLLLLSRVLGLAS---------GLLPLRTYPSAGALYPIEVYLVVGRVEGLAAGLYHYD   70 (180)
T ss_pred             CCccccccccCC-CCCchHHHHHHHHHHhccccC---------CCcccccCCCCCCCcceEEEEEEcccCCCCCccEEEc
Confidence            358999999998 7899 8888888877652211         1122333332   367889999999999999999999


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR  575 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~  575 (650)
                      +..+.                         |..+..++.++.....+.+|.++.+|+++++++++..+...+||.++||.
T Consensus        71 ~~~~~-------------------------L~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~y~~~~~~~  125 (180)
T cd02142          71 PLEHS-------------------------LELLRAGDLRDALRHAALNQAFAADAAFSLFLVADFSRIEWKYGERAYRY  125 (180)
T ss_pred             CCCCE-------------------------EEEEecCcHHHHHHHHHcCChhhhCCCEEEEEEEeecHHHHhHHHHHHHH
Confidence            87764                         45566677777777788899999999999999999999889999999999


Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccc
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      .++|+|+++|+|+|+|+++|+++|++|+|++++++++|++++.++.+++.++||+
T Consensus       126 ~~~d~G~~~q~l~l~a~~~glg~~~~~~~~~~~v~~~l~l~~~~~~~~~~~~vG~  180 (180)
T cd02142         126 ALMEAGHLGQNLYLAATALGLGTCAIGAFDDDALAELLGLDGLEEQPLYAFTVGR  180 (180)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCceEEEEEcHHHHHHHhCCCCcccceEEEEeccC
Confidence            9999999999999999999999999999999999999999974568999999995

These include epoB, part of the epothilone biosynthesis pathway; tubD, part of the tubulysin biosynthesis pathway, mtsD, part of the myxothiozol biosynthesis pathway; indC, part of the indigoidine biosynthesis pathway and tfxB, part of the trifitoxin processing pathway. All are FMN-dependent and oxidize the product of the cyclization of thioesters in short polypeptides.

>PRK10765 nitroreductase A; Provisional

Probab=99.83  E-value=3.3e-20  Score=189.73  Aligned_cols=153  Identities=18%  Similarity=0.143  Sum_probs=118.6

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|++|||+|+|++ ++|+.++|.+||+++.  ||+.         +.|||+          +++|.          
T Consensus         3 ~~~~~i~~RRSiR~F~~-~~v~~e~l~~ileaA~~APSs~---------n~Q~~~----------~ivV~----------   52 (240)
T PRK10765          3 PTIELILSHRSIRHFTD-EPISEAQREAIINAARAASSSS---------FLQCSS----------IIRIT----------   52 (240)
T ss_pred             HHHHHHHHcCccccCCC-CCCCHHHHHHHHHHHHhCCCcc---------cCCceE----------EEEEC----------
Confidence            57789999999999998 7999999999999997  8865         568998          34443          


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccccc
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWM  572 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~  572 (650)
                          +.+.                                  ++.+..++.+|.++.+++..+++++|+.+.....+...
T Consensus        53 ----d~e~----------------------------------~~~l~e~~~~q~~v~~a~~~lv~~~d~~r~~~~~~~~~   94 (240)
T PRK10765         53 ----DKAL----------------------------------REALVELTGGQKYVAQAAEFWVFCADFNRHLQICPDAQ   94 (240)
T ss_pred             ----CHHH----------------------------------HHHHHHHhCCChHHHhchheEEEEEcHHHHHhhCcccc
Confidence                2221                                  22233344568888899999999999766432222111


Q ss_pred             ------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          573 ------YPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       573 ------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                            +.....|+|+++|||+|+|+++|||+||||++  +.++|.++||||+ ++.+++.++||+|.++..
T Consensus        95 ~~~~~~~~~~~~Dagiaaqnl~laA~slGLGs~~ig~~~~~~~~v~~~L~LP~-~~~~v~~l~iGyp~~~~~  165 (240)
T PRK10765         95 LGLAEQLLIGAVDTAIMAQNALLAAESLGLGGVYIGGLRNNIEAVTELLKLPQ-HVLPLFGLCLGWPAQNPD  165 (240)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeCccccCHHHHHHHhCcCC-CceeEEEEEEeccCCCCC
Confidence                  12335799999999999999999999999998  4578999999997 578999999999987653

>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family

Probab=99.83  E-value=4.1e-20  Score=176.84  Aligned_cols=141  Identities=20%  Similarity=0.206  Sum_probs=111.7

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|++|||+|+|+++.+|+.++|.+||+++.  ||+.         |.|||++          ++|.          
T Consensus         1 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~----------   51 (157)
T cd02149           1 NILELLNFRYATKAFDPSKKISDEDLEEILEALRLSPSSF---------GLQPWKF----------LVVE----------   51 (157)
T ss_pred             ChHHHHHhCeehhccCCCCCCCHHHHHHHHHHHHHCcCcC---------CccCeEE----------EEeC----------
Confidence            3568999999999999723999999999999986  8865         4689983          4443          


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhh-cccccccccCceEEEEeeecchhhhccccc
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGL-SCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l-~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                          +++..+.|.                                  .. +.+|.++.+|+..++++++.          
T Consensus        52 ----~~~~~~~l~----------------------------------~~~~~~~~~~~~ap~~i~~~~~~----------   83 (157)
T cd02149          52 ----NEELKARLA----------------------------------PAAWFNQPQVTDASHLVVFLART----------   83 (157)
T ss_pred             ----CHHHHHHHh----------------------------------hhhhcCCcccCCCCEEEEEEecH----------
Confidence                222211121                                  11 33567778899988888874          


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                        .....++|+++|+|+|+|+++|||+||||+|++++++++|+|++.++.+++.++||+|.++
T Consensus        84 --~~~~~d~~~a~~~l~LaA~~lGlgs~~i~~~~~~~v~~~l~l~~~~~~~~~~i~iGy~~~~  144 (157)
T cd02149          84 --DWAAKQAYIALGNMLLAAASLGIDSCPIEGFDPAKLDEILGLDEKGYGSSVMVALGYRSEE  144 (157)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHcCCCcCcccCcCHHHHHHHhCCCcccCceEEEEEeeccCCc
Confidence              1234789999999999999999999999999999999999999755679999999999886

This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.

>cd02148 Nitroreductase_5 Nitroreductase-like family 5

Probab=99.82  E-value=1.3e-19  Score=178.14  Aligned_cols=152  Identities=15%  Similarity=0.154  Sum_probs=114.2

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333          416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF  493 (650)
Q Consensus       416 l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~  493 (650)
                      +.++|++|||+|+|++ ++|+.|+|.+||+++.  ||+.         |.|||++          ++|.           
T Consensus         2 ~~~~~~~RrSvR~f~~-~~I~~e~l~~ileaa~~APS~~---------N~Qpw~f----------vvV~-----------   50 (185)
T cd02148           2 LDQLFTEARTANGFTD-EPVSDEQLRAIYDLVKWGPTAA---------NSQPARF----------VFVR-----------   50 (185)
T ss_pred             hHHHHhhCcccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE-----------
Confidence            5689999999999998 7999999999999997  9875         5799993          4543           


Q ss_pred             ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh--c----
Q 006333          494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS--N----  567 (650)
Q Consensus       494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~--~----  567 (650)
                         +.+.+++|.+..                                ...+|..+.+|+++|+++++.+....  +    
T Consensus        51 ---~~e~~~~l~~~~--------------------------------~~~~~~~~~~ap~~ivv~~~~~~~~~~~~~~~~   95 (185)
T cd02148          51 ---SAEAKERLVPAL--------------------------------SEGNRAKTLAAPVTAILAYDTEFHEQLPRLFPH   95 (185)
T ss_pred             ---CHHHHHHHHHHH--------------------------------HHhhHHHHhcCCEEEEEEecccHHHhHHHhCcc
Confidence               233333333210                                01245566688888888886542110  0    


Q ss_pred             -------cccc--cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          568 -------KNVW--MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       568 -------yg~~--~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                             |...  ..-.+..++|+++|+|+|+|+++|||+||||||++++++++||+++ ++.++..++||||.++
T Consensus        96 ~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~lGlgs~~~~g~d~~~~~~~L~lp~-~~~~v~~iavGy~~~~  170 (185)
T cd02148          96 RDARSWFFGSPALAEETAFRNSSLQGGYFILAARALGLDAGPMSGFDAAAVDAEFFADT-RWRSNFVVNIGYGDPD  170 (185)
T ss_pred             hhhhhhhhcChHHHHHHHHHhHHHHHHHHHHHHHHcCCCcCCCcccCHHHHHHHhCCCC-CeEEEEEEEcCCCCCc
Confidence                   0000  0123567999999999999999999999999999999999999996 6789999999999765

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PRK05365 malonic semialdehyde reductase; Provisional

Probab=99.82  E-value=1.3e-19  Score=179.73  Aligned_cols=155  Identities=14%  Similarity=0.105  Sum_probs=117.3

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      ...+.++|++|||+|+|++ ++|+.|+|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         6 ~~~~~~~i~~RrSvR~f~~-~~I~~e~l~~ileaa~~APS~~---------N~QPw~f----------vvv~--------   57 (195)
T PRK05365          6 DAALDQLFTEARTHNGWLD-EPVSDEQLRELYDLVKWGPTSA---------NCSPARF----------VFVR--------   57 (195)
T ss_pred             HHHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEe--------
Confidence            3568899999999999997 7999999999999997  9976         5799993          4543        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh---hc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL---SN  567 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~---~~  567 (650)
                            +++.+++|...+.                                ..+|....+|+++++++++.+...   ..
T Consensus        58 ------~~e~~~~l~~~~~--------------------------------~~~~~~~~~Ap~~i~v~~~~~~~~~~~~~   99 (195)
T PRK05365         58 ------SAEAKERLRPALS--------------------------------EGNLAKTLAAPVTAIVAYDTEFHEHLPKL   99 (195)
T ss_pred             ------CHHHHHHHHHHHH--------------------------------hcCcchhcCCCEEEEEeeCccHhHhHHHh
Confidence                  3333333332110                                124555678888888888754211   00


Q ss_pred             cc----------cc--cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          568 KN----------VW--MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       568 yg----------~~--~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                      ++          +.  ....+..++|+++++|+|+|+++|||+|||++|+.+.|+++|||++ ++.++.+++||||.++
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~~Glgs~~~~g~~~~~v~~~l~ip~-~~~~v~~ialGy~~~~  177 (195)
T PRK05365        100 FPHADARSWFAGNPALAEETAFRNSSLQGAYLILAARALGLDAGPMSGFDAAAVDAEFFAGT-TWKSNFLVNIGYGDPA  177 (195)
T ss_pred             cchhHHHHHHcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCCccCCccccCHHHHHHHhCCCC-CeeEEEEEEeCCCCCC
Confidence            00          00  1123567999999999999999999999999999999999999997 6899999999999865

>PRK11053 dihydropteridine reductase; Provisional

Probab=99.81  E-value=2.4e-19  Score=180.64  Aligned_cols=160  Identities=18%  Similarity=0.135  Sum_probs=118.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++..+|+.++|.+||+++.  ||+.         |.|||+          +++|.         
T Consensus         1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~---------N~Qpw~----------fvvV~---------   52 (217)
T PRK11053          1 MDIVSVAKKRYTTKAFDPSKKLPAEQIEQIKTLLRFSPSSV---------NSQPWH----------FIVAS---------   52 (217)
T ss_pred             CcHHHHHHhceeeeccCCCCCCCHHHHHHHHHHHHhCCCcC---------CCcCeE----------EEEec---------
Confidence            46789999999999998536899999999999997  9875         579999          35543         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------  565 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------  565 (650)
                           +++.++.|++++.                             ...+++|..+.+|+.+++++++.+..-      
T Consensus        53 -----~~e~~~~l~~~~~-----------------------------~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~   98 (217)
T PRK11053         53 -----TEEGKARIAKAAA-----------------------------GNYAFNERKILDASHVVVFCAKTDMDDAYLELV   98 (217)
T ss_pred             -----CHHHHHHHHHHHh-----------------------------hhccccchhhcCCCEEEEEEecCCCCHHHHHHH
Confidence                 3344444544221                             112346767778888888887642100      


Q ss_pred             -h----c------------------c------cccc-chHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC
Q 006333          566 -S----N------------------K------NVWM-YPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL  615 (650)
Q Consensus       566 -~----~------------------y------g~~~-Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL  615 (650)
                       .    .                  |      +... ..++..++|+++|+|+|+|+++|||+|||+||+.+.|++.|||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~~lmLaA~~~Glgs~~i~g~~~~~v~~~l~i  178 (217)
T PRK11053         99 LEQEDADGRFATEEAKAAQDKGRRFFADMHRKELKDLQHWMEKQVYLALGNLLLGAAALGIDATPIEGFDAAILDAEFGL  178 (217)
T ss_pred             HHHHHhhccCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcCCcCHHHHHHHhCC
Confidence             0    0                  0      0000 0123457899999999999999999999999999999999999


Q ss_pred             CCCCceEEEEEEccccCCcC
Q 006333          616 TGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       616 ~~~~~~~ly~~avG~p~~d~  635 (650)
                      +++++.+++.++|||+.++.
T Consensus       179 p~~~~~~~~~i~lGy~~~~~  198 (217)
T PRK11053        179 REKGLTSSVVVPLGYHSEED  198 (217)
T ss_pred             CCcCcceEEEEEeeccCccc
Confidence            96568899999999998754

>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2

Probab=99.81  E-value=4.4e-19  Score=170.52  Aligned_cols=142  Identities=17%  Similarity=0.302  Sum_probs=109.1

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.            
T Consensus         2 ~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPs~~---------n~Qp~~f----------~vv~------------   49 (162)
T cd02151           2 IELLKKRRSIRKFTD-EPVEKEKVDALLKAALRAPSSR---------NRRPWEF----------IVVT------------   49 (162)
T ss_pred             hHHHHhhchhhcCCC-CCCCHHHHHHHHHHHHhCcCCC---------CCCCeEE----------EEEC------------
Confidence            478999999999998 7999999999999987  8875         5699983          4543            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP  574 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr  574 (650)
                        +.+.++.|...                                 ...+|.++.+|++.|+++++.+.         ..
T Consensus        50 --~~~~~~~l~~~---------------------------------~~~~~~~~~~Ap~~i~~~~~~~~---------~~   85 (162)
T cd02151          50 --DREKLQALSQA---------------------------------KEHGSRFLAGAALAIVVVADPRK---------SD   85 (162)
T ss_pred             --CHHHHHHHHHh---------------------------------hhhhhhhHhcCCEEEEEEecCCC---------Cc
Confidence              22222222210                                 01134567788998988888541         11


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc---------hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF---------DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~---------dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ....|+|+++|+|+|+|+++|||+||||+|.         +++++++|||++ ++.+++.++||+|.++.
T Consensus        86 ~~~~d~g~a~~nl~L~A~~lGlgtc~i~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~iG~p~~~~  154 (162)
T cd02151          86 VWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAEEYVRRLLNIPE-HLRVLCIIAIGYPAEER  154 (162)
T ss_pred             cHHHHHHHHHHHHHHHHHHCCCCeeEecccccccccchhhHHHHHHHhCcCC-CceEEEEEEEeCCCCCC
Confidence            2357999999999999999999999998653         578999999997 57999999999998755

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02138 Nitroreductase_2 Nitroreductase-like family 2

Probab=99.80  E-value=6.5e-19  Score=172.58  Aligned_cols=153  Identities=18%  Similarity=0.243  Sum_probs=118.3

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      .++.++|++|||+|.|+. ++|+.++|.+||+++.  ||++         |.|||++          ++|.+        
T Consensus         3 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~~a~~APs~~---------n~qpw~f----------~vv~~--------   54 (181)
T cd02138           3 YPIDPLILNRWSPRAFDG-EPVPREDLLSLLEAARWAPSAY---------NDQPWRF----------VYARR--------   54 (181)
T ss_pred             CCHHHHHHHhcCcccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEeCC--------
Confidence            578899999999999998 7999999999999997  8865         5689983          45431        


Q ss_pred             eeecCCc-chhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          492 YFLVRNE-DHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       492 Y~y~~~~-~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                            . +.++.+...+                                ...+|.+..+|+..|+++++......  ..
T Consensus        55 ------~~~~~~~~~~~~--------------------------------~~~~~~~~~~Ap~~iiv~~~~~~~~~--~~   94 (181)
T cd02138          55 ------GTEAWEKFLSLL--------------------------------VEGNQGWAKNAPALIAVLSKTTFDKN--EG   94 (181)
T ss_pred             ------cHHHHHHHHHHH--------------------------------hhhchhHHhCCCEEEEEEEccccccc--CC
Confidence                  2 1111111100                                01256777889999999888643221  12


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ...+..++++|+++|+|+|+|+++|||+||||+|+.+.++++||+++ ++.+++.++||+|.++.
T Consensus        95 ~~~~~~~~d~g~a~~nl~Laa~~lGlgt~~~~~~~~~~l~~~l~l~~-~~~~~~~laiG~~~~~~  158 (181)
T cd02138          95 KPNRTHSFDTGAAWGNLALQATAMGLAAHQMGGFDADKAREELNIPE-DYEVEAAIAIGYLGDRA  158 (181)
T ss_pred             CccchhhhhHHHHHHHHHHHHHHcCcccceecCcCHHHHHHHhCCCC-CceEEEEEEeeccCccc
Confidence            23346788999999999999999999999999999999999999997 57899999999998765

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase

Probab=99.80  E-value=2.5e-19  Score=182.13  Aligned_cols=150  Identities=19%  Similarity=0.201  Sum_probs=114.2

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ .+|+.++|.+||+++.  ||++         |.|||++          ++|.            
T Consensus         2 ~~~i~~RRSvR~f~~-~~V~~e~l~~ileaa~~APS~~---------N~Qpw~f----------vVv~------------   49 (229)
T cd02146           2 IETLLNHRSIRKFKD-EPIPDETLETLIAAAQSAPTSS---------NLQAYSV----------IVVT------------   49 (229)
T ss_pred             hHHHhhcceecCCCC-CCCCHHHHHHHHHHHHHcCCcc---------cCCceEE----------EEEc------------
Confidence            468999999999998 7999999999999997  8875         4689983          4443            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc-----
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN-----  569 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg-----  569 (650)
                        +.+.++.                                  +..++++|.++.++++.++++++..+....+.     
T Consensus        50 --~~~~~~~----------------------------------l~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~   93 (229)
T cd02146          50 --DPELKAK----------------------------------LAELAGGQPYVAQAPVFLVFCADFHRLAKIAEKHGGA   93 (229)
T ss_pred             --CHHHHHH----------------------------------HHHhhcCCchHHhCCEEEEEEeehHHHHHHHHHcCCc
Confidence              2222122                                  22223467777888998888888654322111     


Q ss_pred             cc------cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          570 VW------MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       570 ~~------~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ..      .+.....++|+++|+|+|+|+++|||+||||+|.  .++|+++|||++ ++.+++.++||+|.++.
T Consensus        94 ~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgtc~ig~~~~~~~~v~~~L~lp~-~~~~~~~ialGyp~~~~  166 (229)
T cd02146          94 EAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIGGIRNDPEAVIELLNLPE-YVFPVFGLAVGYPDQEP  166 (229)
T ss_pred             chhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEcccccCHHHHHHHhCCCC-CceEEEEEEeeccCCCC
Confidence            01      1234678999999999999999999999999984  368999999997 67899999999998764

These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.

>cd02137 Nitroreductase_1 Nitroreductase-like family 1

Probab=99.79  E-value=5.5e-19  Score=167.32  Aligned_cols=132  Identities=21%  Similarity=0.354  Sum_probs=106.5

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      ++|++|||+|+|+++.+|+.++|.+||+++.  ||++         +.|||++          +++.             
T Consensus         2 ~~i~~RrSvR~f~~~~~v~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vi~-------------   49 (148)
T cd02137           2 DVIESRRSVRNFDPDAKIPREELKEILELATLAPSSF---------NLQPWRF----------VVVR-------------   49 (148)
T ss_pred             cHHhhCccccccCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEC-------------
Confidence            5799999999999823999999999999986  8865         4689983          3332             


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR  575 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~  575 (650)
                       +++.++.|.                                  ..+.+|..+.+|++.++++++.              
T Consensus        50 -~~~~~~~l~----------------------------------~~~~~~~~~~~ap~~i~~~~~~--------------   80 (148)
T cd02137          50 -DPEKKAKLA----------------------------------EAAMNQPQVTTASAVILVLGDL--------------   80 (148)
T ss_pred             -CHHHHHHHH----------------------------------HHHcCCCccCCCCEEEEEEeCC--------------
Confidence             222222221                                  1223566778899988888774              


Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                         |+|+++|+|+|+|+++|||+||||+|.++.|+++||+++ ++.+++.++||||.++
T Consensus        81 ---d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~i~~~l~l~~-~~~~~~~i~iGy~~~~  135 (148)
T cd02137          81 ---NAGLAAMNLMLAARAYGYDTCPMGGFDAEKVAELLNLPA-RYVPVMLIAIGKAAEE  135 (148)
T ss_pred             ---hhHHHHHHHHHHHHHcCCCcCcCcCcCHHHHHHHhCcCC-CceeEEEEEecccCCC
Confidence               999999999999999999999999999999999999997 5789999999999876

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02139 Nitroreductase_3 Nitroreductase-like family 3

Probab=99.79  E-value=6.9e-19  Score=169.34  Aligned_cols=148  Identities=17%  Similarity=0.254  Sum_probs=115.7

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.            
T Consensus         2 ~~~i~~RrSvR~f~~-~~v~~e~l~~ll~aa~~aPs~~---------n~qp~~~----------~vv~------------   49 (164)
T cd02139           2 LDLIKKRRSVRKYKD-DPVEEEKLERILEAARLAPSAK---------NLQPWRF----------IVVE------------   49 (164)
T ss_pred             hHHhhhceeeeccCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEe------------
Confidence            478999999999998 7999999999999987  8865         4689983          4432            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP  574 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr  574 (650)
                        +.+..++|..                                  . ++|.++.++++.++++++..... ....++++
T Consensus        50 --~~~~~~~l~~----------------------------------~-~~~~~~~~ap~~ii~~~~~~~~~-~~~~~~~~   91 (164)
T cd02139          50 --SEEGLKKLAA----------------------------------A-YARKWLQTAPVVIVVCGDKNEAW-VRKIDGKN   91 (164)
T ss_pred             --CHHHHHHHHH----------------------------------H-hccchhhcCCeEEEEEEcchhhc-ccccccCc
Confidence              1222111111                                  0 16778889999998888764322 11223455


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ....|+|+++|+|+|+|+++|+|+|||++|+++.++++|||++ ++.+++.++||++.++.
T Consensus        92 ~~~~d~g~a~~~l~l~A~~~Glgt~~~~~~~~~~~~~~l~l~~-~~~~~~~i~iG~~~~~~  151 (164)
T cd02139          92 SYETDLAIAMEHMMLAAAELGLGTCWIGAFDEDEIKEALDIPE-NEEVVAILPLGYPAEDP  151 (164)
T ss_pred             chhhhHHHHHHHHHHHHHHcCCceeeeeccCHHHHHHHhCcCC-CeEEEEEEeecCCCCCC
Confidence            6678999999999999999999999999999999999999996 57999999999998654

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1

Probab=99.79  E-value=1e-18  Score=168.63  Aligned_cols=143  Identities=19%  Similarity=0.303  Sum_probs=110.8

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      ++|++|||+|.|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.             
T Consensus         2 ~~i~~RrS~R~f~~-~~i~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~-------------   48 (166)
T cd02150           2 DAILTRRSVRKYTD-EPVSDELIEKILRAAMAAPSAG---------NQQPWRF----------VVVR-------------   48 (166)
T ss_pred             cHHhhcchhhcCCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEe-------------
Confidence            58999999999998 7999999999999997  8865         4689983          3432             


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR  575 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~  575 (650)
                       +.+.++.|..                                  ....|....++++.|+++++.+..      +.+..
T Consensus        49 -~~~~~~~l~~----------------------------------~~~~~~~~~~ap~~ii~~~~~~~~------~~~~~   87 (166)
T cd02150          49 -DRETLDKLAA----------------------------------DLPYAGMLREAPVAIVVCLDPEAE------YERTM   87 (166)
T ss_pred             -CHHHHHHHHH----------------------------------hcccchHHhcCCEEEEEEEccccc------ccccc
Confidence             1221111111                                  112345567889989888886432      12334


Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCccc----hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGCFF----DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~----dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      .+.++|+++|+|+|+|+++|+|+||||+|+    ++.+++.|+|++ ++.+++.++||++.++.
T Consensus        88 ~~~~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~iG~~~~~~  150 (166)
T cd02150          88 WVQDCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVRELLGLPE-NVEPMAVIPIGYPAEEP  150 (166)
T ss_pred             hHhHHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHHHhCCCC-CcEEEEEEEEEccCCCC
Confidence            678999999999999999999999999998    578999999997 57999999999998764

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd03370 NADH_oxidase NADPH_oxidase

Probab=99.79  E-value=1.4e-18  Score=166.21  Aligned_cols=143  Identities=22%  Similarity=0.314  Sum_probs=111.4

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ ++|+.++|..||+++.  |+++         +.|||++          ++|.            
T Consensus         2 ~~~i~~RrS~R~f~~-~~i~~e~l~~il~~a~~aPs~~---------n~qp~~~----------~vv~------------   49 (156)
T cd03370           2 TEAIERRRSIRQFDT-DPIPEDLLRRLLEAALRAPSAF---------NLQPWRI----------VVVQ------------   49 (156)
T ss_pred             hHHHhhCeeecccCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEc------------
Confidence            578999999999998 7999999999999997  8865         4689983          3432            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP  574 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr  574 (650)
                        +.+.+++|.                                  ..+.+|..+.+|+.+++++++...       + +.
T Consensus        50 --~~~~~~~l~----------------------------------~~~~~~~~~~~ap~~ii~~~~~~~-------~-~~   85 (156)
T cd03370          50 --DPAQKEALF----------------------------------AAALGQPQVLEAPVTVVFVADDYA-------W-RA   85 (156)
T ss_pred             --CHHHHHHHH----------------------------------HHhcCCchhhCCCEEEEEEeCcHH-------H-HH
Confidence              222211121                                  122366777889999988887321       1 12


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ....++|+.+|+|+|+|+++|||+||||+|.++.|+++|||+++++.+++.++||++.++.
T Consensus        86 ~~~~d~~~~~~~l~L~A~~lGlgs~~i~~~~~~~v~~~l~l~~~~~~~~~~i~iG~~~~~~  146 (156)
T cd03370          86 EGLKQAMIAAGFLLLAATALGLATSPMTGFDEEKVKEALGLPGRDRAIAVVVAVGYPAEEP  146 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCcccCcCcCHHHHHHHhCcCCcCceEEEEEEeecCCCCC
Confidence            2457999999999999999999999999999999999999997456899999999998765

Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor

Probab=99.78  E-value=1.9e-18  Score=170.32  Aligned_cols=176  Identities=13%  Similarity=0.117  Sum_probs=117.4

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ ++|+.|+|.+||+++.  ||++         |.|||++          ++|.            
T Consensus         2 ~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------vvv~------------   49 (193)
T cd02144           2 YELMKRRRSVRKFSD-EPVPREVIENCIRTAGTAPSGA---------NTQPWTF----------VVVS------------   49 (193)
T ss_pred             hhHHhhceeccCCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEeC------------
Confidence            578999999999998 7999999999999997  9876         5799993          5543            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP  574 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr  574 (650)
                        +++.++.|+...............+.  ..  +  .++..  ......+....+++++++++++............-.
T Consensus        50 --~~~~~~~l~~~~~~~~~~~~~~~~~~--~~--~--~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~  119 (193)
T cd02144          50 --DPELKHRIREIAEEEERINYEGRMGK--EW--V--WDLKP--LGTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHY  119 (193)
T ss_pred             --CHHHHHHHHHHHHHHhHHHHHHHHHH--HH--H--HHHhh--hhhhhccchhhcCCEEEEEEeeccccCCccccccCC
Confidence              23333444443321100000000000  00  0  00000  111224566778999998888753221111111111


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-HHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFFD-DPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-d~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ....++|+.+|+|+|+|+++|||+|++++|+. +.++++|||++ ++.+++.++||||.++.
T Consensus       120 ~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~~~~~v~~~l~ip~-~~~~~~~i~lGy~~~~~  180 (193)
T cd02144         120 YNEESVSIACGLLLAALQNAGLGTVTTTPLNMGPFLRRLLGRPA-NEKLLMLLPVGYPDDDA  180 (193)
T ss_pred             cchhhHHHHHHHHHHHHHHCCCceeecCCcchhHHHHHHhCCCC-CCceEEEEEeecCCCCC
Confidence            34679999999999999999999999999887 89999999997 57999999999998764

This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.

>PRK10828 putative oxidoreductase; Provisional

Probab=99.78  E-value=2.8e-18  Score=168.51  Aligned_cols=163  Identities=17%  Similarity=0.145  Sum_probs=112.2

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.|+|.+||+++.  ||+.         |.|||+          |++|.+        
T Consensus         1 m~~~~~i~~RRSvR~f~~-~~v~~e~i~~ileaA~~APS~~---------N~Qpw~----------fvvv~~--------   52 (183)
T PRK10828          1 MDALELLLNRRSASRLAE-PAPTGEQLQNILRAGMRAPDHG---------SLQPWR----------FFVIEG--------   52 (183)
T ss_pred             CcHHHHHHHcccccccCC-CCcCHHHHHHHHHHHHhCcCcC---------CccceE----------EEEEcc--------
Confidence            357789999999999997 7999999999999997  9875         579999          355532        


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                             +.++.|++.+.... ...              ....+. .   .-.+....+|+++++++++.+.     +..
T Consensus        53 -------~~~~~l~~~~~~~~-~~~--------------~~~~~~-~---~~~~~~~~~Ap~~ivv~~~~~~-----~~~  101 (183)
T PRK10828         53 -------EGRERFSALLEQGA-IAA--------------GSDEKA-I---EKARNAPFRAPLIITVVAKCEE-----NHK  101 (183)
T ss_pred             -------HHHHHHHHHHHHHH-Hhc--------------CCCHHH-H---HHHHhhcccCCEEEEEEEecCC-----CCC
Confidence                   22334443221100 000              000000 0   0011223468888888875431     111


Q ss_pred             cch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          572 MYP-RLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       572 ~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                      ... ....++|+++|||+|+|+++|||+||+++  ++++.++++||+|+ ++.+++.++||||.++.+
T Consensus       102 ~~~~~~~~d~~~a~~nl~LaA~a~GlGs~w~~~~~~~~~~~~~~L~ip~-~~~~~~~i~lGyp~~~~~  168 (183)
T PRK10828        102 VPRWEQEVSAGCAVMAMQMAAVAQGFNGIWRSGAWTESPVVREAFGCRE-QDKIVGFLYLGTPQLKAS  168 (183)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCCccCHHHHHHcCCCC-CCEEEEEEEeeCCCCCCC
Confidence            111 23579999999999999999999999965  56679999999997 679999999999987654

>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases

Probab=99.78  E-value=2.2e-19  Score=170.97  Aligned_cols=161  Identities=22%  Similarity=0.308  Sum_probs=117.3

Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCC
Q 006333          420 VRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRN  497 (650)
Q Consensus       420 I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~  497 (650)
                      |++|||+|.|++ ++|+.++|.+||+++.  ||+.         +.|||++          +++.+.++           
T Consensus         1 i~~RrS~R~f~~-~~v~~~~l~~il~~a~~aPs~~---------~~~p~~~----------~vv~~~~~-----------   49 (165)
T PF00881_consen    1 IRNRRSIRDFDP-EPVPDEDLEEILEAARWAPSSG---------NLQPWRF----------YVVNDQEG-----------   49 (165)
T ss_dssp             HHHSSB-SSBES-TSSEHHHHHHHHHHHHTS--GG---------GGGGEEE----------EEEESHHH-----------
T ss_pred             CcccEeccccCC-CCCCHHHHHHHHHHHHHhhhcc---------cccchhe----------eeeccccc-----------
Confidence            789999999998 7899999999999997  7754         4578873          34343322           


Q ss_pred             cchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhh-hcccccccccCceEEEEeeecchhhhccccccchHH
Q 006333          498 EDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKG-LSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRL  576 (650)
Q Consensus       498 ~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~-l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~  576 (650)
                         ++.+.+.+..               ............... ..+.|.+..++++++++..........++.+.++..
T Consensus        50 ---~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~  111 (165)
T PF00881_consen   50 ---RYRLADAAHE---------------AIREKEASADEASSRAAAGNQKAIKGAPVLIIITSIFPREEAKYGERSYRWA  111 (165)
T ss_dssp             ---HHHHHHHHHH---------------HHHHHHHHHHHHHHHHHTTHHHHHHHSSEEEEEHHHHHHHHTTTHHHHHHHH
T ss_pred             ---ccchHHHHHH---------------HHHHhhcchhhHHHhHHHhhhhHHHhCchheeeecccccccccccccccHHH
Confidence               2223322110               000000111111111 256788889999999886666666677788899999


Q ss_pred             HHHHhHHHHHHHHHHHHcCCCeeeeCccchHH-HHhHhCCCCCCceEEEEEEccc
Q 006333          577 FWETGVLGQVLYLEAHAVGISATGIGCFFDDP-VHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~-v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      ++++|+++|+|+|+|+++||++|++++|+++. ++++|||++ ++.++++++|||
T Consensus       112 ~~~~g~~~q~l~L~a~a~Gl~~~~~~~~~~~~~~~~~lgl~~-~~~~~~~i~vGy  165 (165)
T PF00881_consen  112 LIDAGIAAQNLLLAATALGLGSCPMGGFDDDKELKELLGLPD-NEEPLALIAVGY  165 (165)
T ss_dssp             HHHHHHHHHHHHHHHHHTTEEEEEEGGSGHHHHHHHHHTHHT-TEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHhcCceEEEecCcchHHHHHHHhCcCC-CCEEEEEEEecC
Confidence            99999999999999999999999999999999 999999996 678999999997

Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....

>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis

Probab=99.78  E-value=3.9e-18  Score=169.11  Aligned_cols=174  Identities=13%  Similarity=0.128  Sum_probs=120.8

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      ++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.             
T Consensus         2 e~i~~RRSiR~F~~-~~V~~e~i~~ileaA~~APS~~---------N~Qpw~f----------vVv~-------------   48 (196)
T cd02145           2 RAIRWRRDVRHFFP-DPVPEEVLERLLAAAHHAPSVG---------LSQPWRF----------IRVR-------------   48 (196)
T ss_pred             hHHHhhhhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc-------------
Confidence            68999999999998 7899999999999997  9876         5799993          5553             


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhc-cccccch
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSN-KNVWMYP  574 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~-yg~~~Yr  574 (650)
                       +++.+++|.+.+.....  ....         ...++....  .....+....+++..++++.+....... ++.+.++
T Consensus        49 -~~~~~~~l~~~~~~~~~--~~~~---------~~~~~~~~~--~~~~~~~~~~~ap~~ii~~~~~~~~~~~~~~~~~~~  114 (196)
T cd02145          49 -DPATRAAIKALFEEERA--EAAE---------AYPGERAAE--YARLKLEGILEAPVNLAVFCDRDRAGGHVLGRATMP  114 (196)
T ss_pred             -CHHHHHHHHHHHHHHHH--HHHh---------hccchhHHH--HHHHHhhhhhcCCeEEEEEEecccccccCCCccCch
Confidence             33344555544321100  0000         001111110  1111223346788888888875432221 2333332


Q ss_pred             -HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCcccc
Q 006333          575 -RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMS  639 (650)
Q Consensus       575 -~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~~  639 (650)
                       ....++|+++|||+|+|+++|||+|++|+|+.+.++++|||++ ++.+++.++||||.++..+..
T Consensus       115 ~~~~~~~~ia~~nl~LaA~~~Glgt~~~~~~~~~~v~~~l~lp~-~~~~~~~l~lGy~~~~~~~~~  179 (196)
T cd02145         115 EMDLYSVVCAIQNLWLAARAEGLGVGWVSILDPEALARLLGIPE-DWEPVAYLCLGYVSEFPDTPE  179 (196)
T ss_pred             hhhhhhHHHHHHHHHHHHHHcCCceEEecccChHHHHHHcCcCC-CcEEEEEEEEecCCCCCCCcH
Confidence             3467899999999999999999999999999999999999997 689999999999999886643

Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.

>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain

Probab=99.77  E-value=5.8e-18  Score=167.44  Aligned_cols=171  Identities=18%  Similarity=0.217  Sum_probs=114.2

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      |+|++|||+|+|++ ++|+.|+|.+||+++.  ||+.         |.|||+          +++|.             
T Consensus         1 ~~i~~RRSvR~f~~-~~V~~e~l~~il~aA~~APS~~---------n~Qpw~----------fvvv~-------------   47 (194)
T TIGR03553         1 QAVLLRRSVRRFSD-DPVDPDAVRAAVAAALTAPAPH---------HTRPVR----------FVWVE-------------   47 (194)
T ss_pred             ChHHhccccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeE----------EEEEe-------------
Confidence            47999999999998 7999999999999997  8875         579999          35554             


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc--c--
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV--W--  571 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~--~--  571 (650)
                       +++.+++|.+.+...  |...  +.    -... ..+  ....... .+.+..+|+..++++.+.... ..+..  +  
T Consensus        48 -~~e~~~~l~~~~~~~--~~~~--~~----~~~~-~~~--~~~~~~~-~~~~~~~ap~~iv~~~~~~~~-~~~~~~~~~~  113 (194)
T TIGR03553        48 -DAERRTRLLDAMADA--WRAD--LR----ADGL-SAD--AIDRRVA-RGDILRDAPELVIPCLVPDGA-HSYPDERRTA  113 (194)
T ss_pred             -CHHHHHHHHHHHHHH--HHHh--hh----hccC-chH--HHHHHhh-hhhhHhcCCeEEEEEEccccc-ccCCcccccc
Confidence             334455555443211  1000  00    0000 000  0000111 224456788888777643211 11111  1  


Q ss_pred             -cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          572 -MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       572 -~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                       .......++|+++|||+|+|+++|||+||+|+  |+.+.|+++|||++ ++.+++.++||+|.++..
T Consensus       114 ~~~~~~~~~~g~a~qnl~LaA~~~Glgt~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~iG~p~~~~~  180 (194)
T TIGR03553       114 AEHTMFTVAVGAAVQNLLVALAVEGLGSCWVGSTIFAADVVRAELDLPA-DWEPLGAVAVGHPAEPPG  180 (194)
T ss_pred             cchhhHHhHHHHHHHHHHHHHHHcCCCeEEecCcccCHHHHHHHhCcCC-CceEEEEEEEecCCCCCC
Confidence             11223579999999999999999999999998  88889999999997 679999999999988653

Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.

>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase

Probab=99.77  E-value=6.5e-18  Score=168.81  Aligned_cols=177  Identities=14%  Similarity=0.152  Sum_probs=120.4

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      ..+.++|++|||+|.|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         7 ~~~~~~i~~RRSiR~f~~-~~i~~e~l~~il~aA~~APS~~---------n~Qpw~f----------vvv~---------   57 (205)
T TIGR02476         7 AAVYRLIRERRDVRHFRS-DPVPEAVLERLLDAAHHAPSVG---------FSQPWRF----------VRVE---------   57 (205)
T ss_pred             HHHHHHHHhhhhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc---------
Confidence            368899999999999997 7999999999999996  9875         5799993          4543         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hcccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SNKNV  570 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~yg~  570 (650)
                           +.+.++.|...+...  .+..        . ....++....  .....+....+++++++++++..... ..++.
T Consensus        58 -----~~e~~~~l~~~~~~~--~~~~--------~-~~~~~~~~~~--~~~~~~~~~~~aP~~iiv~~~~~~~~~~~~~~  119 (205)
T TIGR02476        58 -----SPATREAVHALFTRA--NQAA--------A-AIYDGERASQ--YHRLKLEGIREAPVQLAVFCDDARGEGHGLGR  119 (205)
T ss_pred             -----CHHHHHHHHHHHHHH--HHHH--------h-hhcchhhHHH--HHHhhhcchhcCCeEEEEEeeccccccccccc
Confidence                 223334444332210  0000        0 0001111000  01112344567888888888754311 11111


Q ss_pred             ccch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCccc
Q 006333          571 WMYP-RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIM  638 (650)
Q Consensus       571 ~~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~  638 (650)
                      ..++ ....++|+++|||+|+|+++|||+|+||+|+.++|+++|||++ ++++++.++||+|.++...-
T Consensus       120 ~~~~~~~~~~~g~A~~nl~LaA~~~GlGs~~~~~~~~~~v~~~L~lp~-~~~~~~~l~iGyp~~~~~~~  187 (205)
T TIGR02476       120 HTMPEMLRYSVACAIQNLWLAARAEGLGVGWVSILDPDAVRRLLGVPE-GWRLVAYLCLGWPDAFYDEP  187 (205)
T ss_pred             cccchhhhccHHHHHHHHHHHHHHCCCcceeecccChHHHHHHhCcCC-CceEEEEEEeecCCccCCCC
Confidence            1112 2457899999999999999999999999999999999999997 68999999999998877443

The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.

>cd02136 Nitroreductase Nitroreductase family

Probab=99.74  E-value=2.4e-17  Score=160.55  Aligned_cols=157  Identities=21%  Similarity=0.208  Sum_probs=110.6

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFL  494 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y  494 (650)
                      .++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.            
T Consensus         2 ~~~i~~RrSvR~f~~-~~v~~e~l~~il~~a~~aPs~~---------n~q~~~f----------~vv~------------   49 (178)
T cd02136           2 DEAIKSRHSVRAFLP-DPVPRETIEEILAAAQRAPSGC---------NTQPWQV----------YVVT------------   49 (178)
T ss_pred             hHHHhhchhhhcCCC-CCCCHHHHHHHHHHHHhCcccc---------CCCCEEE----------EEEC------------
Confidence            478999999999998 7999999999999987  8875         4689983          3443            


Q ss_pred             cCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccch
Q 006333          495 VRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYP  574 (650)
Q Consensus       495 ~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr  574 (650)
                        + +.+++|.+...    +-.            ....+........ ..+....++++.++++++...         -.
T Consensus        50 --~-~~~~~l~~~~~----~~~------------~~~~~~~~~~~~~-~~~~~~~~ap~~i~~~~~~~~---------~~  100 (178)
T cd02136          50 --G-EALDRLRQLYG----ALG------------IAREDKAGRARQA-LRNFRFFGAPVGLFFTIDRRL---------GP  100 (178)
T ss_pred             --c-HHHHHHHHHHH----HcC------------CCcccHHHHHHHH-hhcccccCCCEEEEEEecCCC---------Cc
Confidence              1 22333333211    000            1111222211111 122335668887777655320         12


Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ..+.++|+++|||+|+|+++|||+||||+|.  ++.++++|||++ ++.+++.++||+|.++.
T Consensus       101 ~~~~~~g~a~~nl~Laa~~lGlgt~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~iG~~~~~~  162 (178)
T cd02136         101 GSALDLGMFLQTIMLAARARGLDTCPQAALAKYPDIVREELGIPD-DEMLVCGIALGYADPDA  162 (178)
T ss_pred             chHHhHHHHHHHHHHHHHHcCCccccccccccCcHHHHHHhCCCC-CceEEEEEEeccCCCcC
Confidence            3568999999999999999999999999975  678999999997 57899999999998865

Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase

Probab=99.73  E-value=4.1e-17  Score=155.87  Aligned_cols=155  Identities=24%  Similarity=0.267  Sum_probs=107.9

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      ++|++|||+|+|++ ++|+.|+|.+||+++.  ||+.         |.|||++          ++|.+            
T Consensus         2 ~~i~~RrSvR~f~~-~~v~~e~l~~il~aA~~APs~~---------n~Qpw~f----------~vv~~------------   49 (160)
T cd02135           2 DLLLTRRSIKKLTL-PAPDREQLEQILEAAARAPDHG---------KLEPWRF----------IVIRG------------   49 (160)
T ss_pred             cHHHhcccchhcCC-CCCCHHHHHHHHHHHHhCCCcC---------CccCeEE----------EEEec------------
Confidence            57999999999998 7999999999999987  8875         5699993          45442            


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR  575 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~  575 (650)
                        + .++.|.+.+...+....  .         +.. .      .....+....++++.++++++.+...    ......
T Consensus        50 --~-~~~~l~~~~~~~~~~~~--~---------~~~-~------~~~~~~~~~~~ap~~i~~~~~~~~~~----~~~~~~  104 (160)
T cd02135          50 --E-ARERLAELLAEAAAREP--G---------APE-E------QIEKAREKALRAPLVIAVVAKPQPHP----KVPEWE  104 (160)
T ss_pred             --h-HHHHHHHHHHHHHHhcc--C---------CCH-H------HHHHHHccccCCCEEEEEEEecCCCC----CCCHHH
Confidence              1 12233332211000000  0         000 0      00112356678899998888864321    111223


Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccc
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      .+.++|+++|+|+|+|+++|||+||+|++  +++.++++|||++ ++.++..++|||
T Consensus       105 ~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~ip~-~~~~~~~i~lGy  160 (160)
T cd02135         105 QLLAAGAAIQNLLLAAHALGFGAVWRTGWAAYDPAVREALGLAE-GERIVGFLYIGT  160 (160)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCeEeecCCcccCHHHHHHhCCCC-CCEEEEEEEecC
Confidence            46799999999999999999999999875  5678999999997 678999999997

NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.

>cd02143 NADH_nitroreductase Nitroreductase family

Probab=99.69  E-value=1.4e-16  Score=150.83  Aligned_cols=131  Identities=21%  Similarity=0.227  Sum_probs=102.9

Q ss_pred             HHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecC
Q 006333          419 VVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVR  496 (650)
Q Consensus       419 ~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~  496 (650)
                      +|++|||+|+|++ ++|+.++|.+|++++.  ||+.         +.|||++          +++.+.            
T Consensus         1 ~i~~RrSvR~F~~-~~i~~~~l~~il~aa~~aPs~~---------n~qp~~f----------~vv~~~------------   48 (147)
T cd02143           1 LLRGRRSVRHYRP-EPVPRETIERLLDIARYAPTGS---------NSQPVHF----------TVVDDP------------   48 (147)
T ss_pred             CcccceeeecCCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEeCH------------
Confidence            3689999999998 7999999999999987  8864         4689983          444321            


Q ss_pred             CcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHH
Q 006333          497 NEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRL  576 (650)
Q Consensus       497 ~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~  576 (650)
                         .     .                                   ...+.+..+++..++++++.+.      .    ..
T Consensus        49 ---~-----~-----------------------------------~~~~~~~~~ap~~i~~~~~~~~------~----~~   75 (147)
T cd02143          49 ---W-----E-----------------------------------KGIDPIFRGAPHLLLASAPRDF------P----TA   75 (147)
T ss_pred             ---H-----H-----------------------------------cCcCceecCCCEEEEEEECCCC------C----Cc
Confidence               0     0                                   0012345678888888876431      1    24


Q ss_pred             HHHHhHHHHHHHHHHHHcCCCeeeeCccch-----HHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          577 FWETGVLGQVLYLEAHAVGISATGIGCFFD-----DPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-----d~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      +.|+|+++|+|+|+|+++|+|+||+|+|..     +++++.|+|++ ++.+++.++||+|.++.
T Consensus        76 ~~d~g~a~~~l~LaA~~lGlgs~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~iaiG~~~~~~  138 (147)
T cd02143          76 QVDAIIALTYFELAAQALGLGTCWAGFFQAAAELYPPLRDRLGLPE-GHKVGYAMMFGYPAVKP  138 (147)
T ss_pred             cchHHHHHHHHHHHHHHcCCCEehhhhHHHHhhhhHHHHHHcCcCC-CcEEEEEEEEecCCCCC
Confidence            679999999999999999999999998663     89999999997 57899999999998866

Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PRK13294 F420-0--gamma-glutamyl ligase; Provisional

Probab=99.68  E-value=3.3e-16  Score=172.63  Aligned_cols=172  Identities=21%  Similarity=0.242  Sum_probs=117.4

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333          416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF  493 (650)
Q Consensus       416 l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~  493 (650)
                      +.++|++|||+|+|++ ++|+.|+|.+||+++.  ||++         |.|||++          ++|.           
T Consensus       253 ~~eaI~~RRSvR~F~~-~pVp~E~I~~ILeAA~~APS~~---------N~QPWrF----------VVV~-----------  301 (448)
T PRK13294        253 RREAVLLRRSVREFSD-DPVDPEAVRRAVAAALTAPAPH---------HTRPVRF----------VWLR-----------  301 (448)
T ss_pred             HHHhhhcCCccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEe-----------
Confidence            5789999999999998 7999999999999997  9875         5799993          5543           


Q ss_pred             ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc--c
Q 006333          494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV--W  571 (650)
Q Consensus       494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~--~  571 (650)
                         +++.+++|.+.+..  .|...  ...    ... ...  ...+... .+.++.+|++.++++.+.+... .+..  .
T Consensus       302 ---d~e~r~kL~~~~~~--~~~~~--l~~----~~~-~~~--~~~~~~~-~~~~~~~AP~lIvv~~~~~~~~-~~~~~~~  365 (448)
T PRK13294        302 ---SAAVRTRLLDAMRD--AWRAD--LRA----DGL-SEE--SIARRVR-RGDILYDAPELVVPFLVPDGAH-SYPDARR  365 (448)
T ss_pred             ---CHHHHHHHHHHHHH--HHHHh--hhh----ccc-cHH--HHHHHhh-hcchhhcCCeEEEEEEeccccc-ccccccc
Confidence               33344455544321  11110  000    000 001  1111111 3345677888887776543211 1110  0


Q ss_pred             ---cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          572 ---MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       572 ---~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                         .....+.++|+++|||+|+|+++|||+|||++  |+.+.|+++|||++ ++++++.++||||.++.
T Consensus       366 ~~~e~~~~~~daG~AaqNL~LAA~alGLGScwig~~~~d~~~Vre~LgLPe-~~~~v~~IaIGyPa~~~  433 (448)
T PRK13294        366 TAAERTMFTVAVGAAVQNLLVALAVEGLGSCWIGSTIFAADVVRAVLDLPA-DWEPLGAVAIGHPAEPP  433 (448)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHHCCCcEEEecccccChHHHHHHhCcCC-CcEEEEEEEEeCcCCCC
Confidence               11234689999999999999999999999987  88899999999997 68999999999998765

>cd02140 Nitroreductase_4 Nitroreductase-like family 4

Probab=99.68  E-value=1.9e-16  Score=156.53  Aligned_cols=167  Identities=13%  Similarity=0.124  Sum_probs=101.6

Q ss_pred             HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333          417 REVVRKRRSAVDMDGVTAIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF  493 (650)
Q Consensus       417 ~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~  493 (650)
                      .++|++|||+|+|+++.+|+.|+|..||+++ .  ||++         |.|||++          ++|.+          
T Consensus         2 ~e~i~~RRSiR~f~~~~~V~~e~l~~ileaA~~~APS~~---------N~QPW~f----------~Vv~~----------   52 (192)
T cd02140           2 LEAIKARRSIYALGKNLPVSDDEIEEIVKEAVKHSPSSF---------NSQSSRA----------VILFG----------   52 (192)
T ss_pred             HHHHhhCeehhccCCCCCCCHHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEEC----------
Confidence            4789999999999863589999999999966 3  9976         5799994          45432          


Q ss_pred             ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------hc
Q 006333          494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------SN  567 (650)
Q Consensus       494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------~~  567 (650)
                           +.++.|.+.+.....  ...  +.  ..+   ......       .+.+ ..++.+++++++.+...      ..
T Consensus        53 -----~~~~~~~~~~~~~~~--~~~--~~--~~~---~~~~~~-------~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  110 (192)
T cd02140          53 -----EEHEKLWDIVKDTLR--AIV--PA--EAF---AATKEK-------LDGF-KAGYGTVLFFEDQAVVKGLQEKFPL  110 (192)
T ss_pred             -----hHHHHHHHHHHHHHH--hcC--Ch--hhc---ccchhH-------HHHH-HHhhceeeeeechHHHHHHHHHhHH
Confidence                 222223221110000  000  00  000   000000       0111 23344444444422110      00


Q ss_pred             cccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          568 KNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       568 yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      +......+...++|+++|||+|+|+++|||+|++++  ++++.|+++||+++ ++.++++++||||.++.
T Consensus       111 ~~~~~~~~~~~d~~~a~~nl~LaA~~~GlGs~~~~~~~~~~~~v~~~l~ip~-~~~~v~~i~lGyp~~~~  179 (192)
T cd02140         111 YADNFPVWSEQSSGMAQIAVWTALAAEGIGANLQHYNPLIDEEVAKKWNIPS-NWKLRAQLVFGSPEAPA  179 (192)
T ss_pred             HHhhCccchhhhhHHHHHHHHHHHHhCCCcccHHHhCccCCHHHHHhcCCCc-cceEEEEeecccCCCCC
Confidence            111111234569999999999999999999996542  45599999999997 67999999999998764

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PF00881 Nitroreductase: Nitroreductase family; InterPro: IPR000415 This entry represents a family of proteins consisting of nitroreductase enzymes and related oxidoreductases

Probab=99.65  E-value=1.7e-17  Score=158.01  Aligned_cols=149  Identities=27%  Similarity=0.343  Sum_probs=113.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.+||+.                .|.+||+||+|||++|++ .+.++      .|.+....+.+....
T Consensus         8 R~f~~~~v~~~~l~~il~~----------------a~~aPs~~~~~p~~~~vv-~~~~~------~~~~~~~~~~~~~~~   64 (165)
T PF00881_consen    8 RDFDPEPVPDEDLEEILEA----------------ARWAPSSGNLQPWRFYVV-NDQEG------RYRLADAAHEAIREK   64 (165)
T ss_dssp             SSBESTSSEHHHHHHHHHH----------------HHTS--GGGGGGEEEEEE-ESHHH------HHHHHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHHHHHHHH----------------HHHhhhcccccchheeee-ccccc------ccchHHHHHHHHHHh
Confidence            3567888999999999998                488999999999999998 44332      333322222222211


Q ss_pred             cCCchh------ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHH-
Q 006333          224 KIPSRF------DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKE-  296 (650)
Q Consensus       224 ~~~~~~------~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~-  296 (650)
                      ......      ...+..+.+++++|+++....+...+|+++.+++.++|+|+++||++|+|+++||++|++++|+++. 
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~l~L~a~a~Gl~~~~~~~~~~~~~  144 (165)
T PF00881_consen   65 EASADEASSRAAAGNQKAIKGAPVLIIITSIFPREEAKYGERSYRWALIDAGIAAQNLLLAATALGLGSCPMGGFDDDKE  144 (165)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHSSEEEEEHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEGGSGHHHH
T ss_pred             hcchhhHHHhHHHhhhhHHHhCchheeeecccccccccccccccHHHHHHHHHHHHHHHHHHHhcCceEEEecCcchHHH
Confidence            111000      0112456799999999999999999999999999999999999999999999999999999999999 


Q ss_pred             HHHHhCCCCCCcceeeeccc
Q 006333          297 LKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       297 l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++++|||+. .|.++.+++|
T Consensus       145 ~~~~lgl~~-~~~~~~~i~v  163 (165)
T PF00881_consen  145 LKELLGLPD-NEEPLALIAV  163 (165)
T ss_dssp             HHHHHTHHT-TEEEEEEEEE
T ss_pred             HHHHhCcCC-CCEEEEEEEe
Confidence            999999994 4667777766

Members of this family utilise FMN as a cofactor and are often found to be homodimers. Possible characteristics include Oxygen-insensitive NAD(P)H nitroreductase (FMN-dependent nitroreductase) (Dihydropteridine reductase) (1.6.99.7 from EC) and NADH dehydrogenase (1.6.99.3 from EC). A number of the proteins are described as oxidoreductases. They are primarily found in bacterial lineages though a number of eukaryotic homologs have been identified: Caenorhabditis elegans P34273 from SWISSPROT, Drosophila melanogaster (Fruit fly) Q8T3Q0 from SWISSPROT Q9VTE7 from SWISSPROT, Mus musculus (Mouse) Q9DCX8 from SWISSPROT and Homo sapiens (Human) O75989 from SWISSPROT. This protein is not found in photosynthetic eukaryotes. The sequences containing this entry in photosynthetic organisms are possible false positives. ; GO: 0016491 oxidoreductase activity; PDB: 1BKJ_A 2BKJ_B 3OF4_C 3E39_B 3GBH_B 2R01_A 1YWQ_A 2WZW_B 2WZV_B 2ISL_H ....

>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor

Probab=99.64  E-value=1.4e-15  Score=138.29  Aligned_cols=118  Identities=24%  Similarity=0.350  Sum_probs=93.6

Q ss_pred             HHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCC
Q 006333          420 VRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRN  497 (650)
Q Consensus       420 I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~  497 (650)
                      |++|||+|+|++ ++|+.+++.+|++++.  ||+.         +.|||++          +++                
T Consensus         1 ~~~RrS~R~f~~-~~i~~~~l~~l~~~~~~aPs~~---------n~qp~~~----------~~v----------------   44 (122)
T cd02062           1 ILKRRSVRKFTD-EPVPEEVLEKILEAARYAPSGG---------NLQPWRF----------VVV----------------   44 (122)
T ss_pred             CccceecccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEE----------------
Confidence            468999999998 7999999999999886  8764         5689983          222                


Q ss_pred             cchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHH
Q 006333          498 EDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLF  577 (650)
Q Consensus       498 ~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~  577 (650)
                                                                         .+++..++++++.+....     ..+...
T Consensus        45 ---------------------------------------------------~~ap~~i~~~~~~~~~~~-----~~~~~~   68 (122)
T cd02062          45 ---------------------------------------------------YGAPVLIIVCADKDAARP-----SGPWAE   68 (122)
T ss_pred             ---------------------------------------------------eCCCEEEEEEeccccccc-----cCccHH
Confidence                                                               123444555554332211     234567


Q ss_pred             HHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEEEEccc
Q 006333          578 WETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       578 ~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      .++|+++|+|+|+|+++|+|+||+++++  ++++.+.|++++ ++.++..++||+
T Consensus        69 ~~~g~a~~~l~l~a~~~Glg~~~~~~~~~~~~~~~~~l~l~~-~~~~~~~l~~G~  122 (122)
T cd02062          69 ADAGIAAQNILLAAHALGLGSCWIGGLDLVEEELRELLGIPE-GYEILAVIAVGY  122 (122)
T ss_pred             hHHHHHHHHHHHHHHHcCCCchhcCCcccchHHHHHHhCcCC-CcEEEEEEEeeC
Confidence            9999999999999999999999999999  999999999997 578999999996

They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.

>COG0778 NfnB Nitroreductase [Energy production and conversion]

Probab=99.57  E-value=2.4e-14  Score=141.02  Aligned_cols=155  Identities=22%  Similarity=0.275  Sum_probs=112.1

Q ss_pred             CcHHHHHHhcCCCCCCC-CCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          414 FTVREVVRKRRSAVDMD-GVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~-~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      +.+.++|++|||+|.|+ + .+|+.++|.+||+++.  ||+.         +.|||++          ++|.        
T Consensus         3 ~~~~~~i~~RrS~R~f~~~-~pi~~e~l~~il~aa~~aPs~~---------n~qpw~f----------i~v~--------   54 (207)
T COG0778           3 MDILEAIRSRRSIRKFDSP-KPIPEEDLEKILEAARLAPSAG---------NLQPWRF----------IVVR--------   54 (207)
T ss_pred             hHHHHHHHHhhhhhccCCC-CCCCHHHHHHHHHHHHhCcCcc---------CCcceEE----------EEEc--------
Confidence            56889999999999999 6 8999999999999997  8864         5799993          4443        


Q ss_pred             eeeecCCc-chhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhccc-ccccccCceEEEEeeecch-----
Q 006333          491 LYFLVRNE-DHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCH-QDIAGDGCFSLGMVAHFEP-----  563 (650)
Q Consensus       491 lY~y~~~~-~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~-Q~~~~~aa~~l~~~a~~~~-----  563 (650)
                            +. +.++.|.+                                  .+.. |....++...++++++...     
T Consensus        55 ------~~~~~~~~l~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (207)
T COG0778          55 ------DEDELKAALAE----------------------------------LAGGGQAQLKEASALLAVLADLESLDKVA   94 (207)
T ss_pred             ------CcHHHHHHHHH----------------------------------hhhhhhhhcccCCeEEEEEeehhhhhhcc
Confidence                  23 32222221                                  1112 4445556666666665431     


Q ss_pred             ------h------------hhcccc-ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCC---Cce
Q 006333          564 ------T------------LSNKNV-WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGS---KFQ  621 (650)
Q Consensus       564 ------~------------~~~yg~-~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~---~~~  621 (650)
                            .            ...++. ...+....++++++|||+|+|+++|+|+||||+|..+.+.+.++++..   .+.
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nl~Laa~~~Glg~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (207)
T COG0778          95 EGRAPDLGAAVFLLAERRKLLGYGRRAALEYALDAASIAAQNLLLAAEALGLGSCWIGGFDAEDLKELLRELLGLPEEEK  174 (207)
T ss_pred             cccccHHHHHHHhcccchhhcccchhhhHHHHHHHHHHHHHHHHHHHHHcCCCcccCccccHHHHHHHHhcccccCccee
Confidence                  0            001111 234567788888999999999999999999999999988888887632   278


Q ss_pred             EEEEEEccccCCcCc
Q 006333          622 SLYHFTVGGPVVDRR  636 (650)
Q Consensus       622 ~ly~~avG~p~~d~r  636 (650)
                      +++.+++|++.++..
T Consensus       175 ~~~~l~lG~~~~~~~  189 (207)
T COG0778         175 PVGLLALGYPAEEPP  189 (207)
T ss_pred             EEEEEEeecCCCCcC
Confidence            999999999998765

>cd02149 NfsB_like_nitroreductase NAD(P)H:FMN oxidoreductase family

Probab=99.56  E-value=2.4e-14  Score=136.97  Aligned_cols=125  Identities=22%  Similarity=0.237  Sum_probs=97.3

Q ss_pred             CCCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+.++ +++.++|.+||+.                .+.+||++|++||+++|+... +...                .+
T Consensus        13 R~f~~~~~v~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l   59 (157)
T cd02149          13 KAFDPSKKISDEDLEEILEA----------------LRLSPSSFGLQPWKFLVVENE-ELKA----------------RL   59 (157)
T ss_pred             hccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCccCeEEEEeCCH-HHHH----------------HH
Confidence            357776 9999999999987                588999999999998877542 1111                11


Q ss_pred             ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhC
Q 006333          223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMG  302 (650)
Q Consensus       223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLg  302 (650)
                      .+..  . ..+.++.++|++|+++++.            .+...|+|.++||++|+|+++|||+||+++|+++.++++||
T Consensus        60 ~~~~--~-~~~~~~~~ap~~i~~~~~~------------~~~~~d~~~a~~~l~LaA~~lGlgs~~i~~~~~~~v~~~l~  124 (157)
T cd02149          60 APAA--W-FNQPQVTDASHLVVFLART------------DWAAKQAYIALGNMLLAAASLGIDSCPIEGFDPAKLDEILG  124 (157)
T ss_pred             hhhh--h-cCCcccCCCCEEEEEEecH------------HHHHHHHHHHHHHHHHHHHHcCCCcCcccCcCHHHHHHHhC
Confidence            1110  0 0124567899999998873            23457999999999999999999999999999999999999


Q ss_pred             CCCCCcceeeeccc
Q 006333          303 LDIFPEFVIPSKPI  316 (650)
Q Consensus       303 Ld~~~E~v~~~~~i  316 (650)
                      |++..+.++++++|
T Consensus       125 l~~~~~~~~~~i~i  138 (157)
T cd02149         125 LDEKGYGSSVMVAL  138 (157)
T ss_pred             CCcccCceEEEEEe
Confidence            98765558888888

This domain catalyzes the reduction of flavin, nitrocompound, quinones and azo compounds using NADH or NADPH as an electron donor. The enzyme is a homodimer, and each monomer binds a FMN as co-factor. This family includes FRase I in Vibrio fischeri, wihich reduces FMN into FMNH2 as part of the bioluminescent reaction. The family also includes oxygen-insensitive nitroreductases that use NADH or NADPH as an electron donor in the ping pong bi bi mechanism. This type of nitroreductase can be used in cancer chemotherapy to activate a range of prodrugs.

>cd02139 Nitroreductase_3 Nitroreductase-like family 3

Probab=99.56  E-value=1.3e-14  Score=139.56  Aligned_cols=133  Identities=19%  Similarity=0.242  Sum_probs=104.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|..||+.                .+.+||++|++||+++|+... +...                .+.
T Consensus        12 R~f~~~~v~~e~l~~ll~a----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l~   58 (164)
T cd02139          12 RKYKDDPVEEEKLERILEA----------------ARLAPSAKNLQPWRFIVVESE-EGLK----------------KLA   58 (164)
T ss_pred             eccCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH-HHHH----------------HHH
Confidence            3577889999999999997                588999999999998887542 1111                111


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                      ..     ..+.++.++|.+|+++++... .++...+++++..+|+|+++||++|+|+++|+|+|++++|+++.++++|||
T Consensus        59 ~~-----~~~~~~~~ap~~ii~~~~~~~-~~~~~~~~~~~~~~d~g~a~~~l~l~A~~~Glgt~~~~~~~~~~~~~~l~l  132 (164)
T cd02139          59 AA-----YARKWLQTAPVVIVVCGDKNE-AWVRKIDGKNSYETDLAIAMEHMMLAAAELGLGTCWIGAFDEDEIKEALDI  132 (164)
T ss_pred             HH-----hccchhhcCCeEEEEEEcchh-hcccccccCcchhhhHHHHHHHHHHHHHHcCCceeeeeccCHHHHHHHhCc
Confidence            10     013456789999999887543 344445667888999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +.. +.++++++|
T Consensus       133 ~~~-~~~~~~i~i  144 (164)
T cd02139         133 PEN-EEVVAILPL  144 (164)
T ss_pred             CCC-eEEEEEEee
Confidence            954 567778777

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PRK10765 nitroreductase A; Provisional

Probab=99.52  E-value=7.5e-14  Score=142.92  Aligned_cols=135  Identities=13%  Similarity=0.108  Sum_probs=103.7

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.++||+.++|.+||+.                .+.+||++|+|||++++|... +-.                ..+.
T Consensus        15 R~F~~~~v~~e~l~~ilea----------------A~~APSs~n~Q~~~~ivV~d~-e~~----------------~~l~   61 (240)
T PRK10765         15 RHFTDEPISEAQREAIINA----------------ARAASSSSFLQCSSIIRITDK-ALR----------------EALV   61 (240)
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCcccCCceEEEEECCH-HHH----------------HHHH
Confidence            3578899999999999998                588999999999998777432 111                1222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchh------hhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA------FRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYK  295 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra------yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~  295 (650)
                      +...    .+.++.+++.+|++++++.|....+.+..      +.+..+|+|+++||++++|+++|||+|++|++  +.+
T Consensus        62 e~~~----~q~~v~~a~~~lv~~~d~~r~~~~~~~~~~~~~~~~~~~~~Dagiaaqnl~laA~slGLGs~~ig~~~~~~~  137 (240)
T PRK10765         62 ELTG----GQKYVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLIGAVDTAIMAQNALLAAESLGLGGVYIGGLRNNIE  137 (240)
T ss_pred             HHhC----CChHHHhchheEEEEEcHHHHHhhCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeCccccCHH
Confidence            2110    13467899999999999888655444322      23457899999999999999999999999998  568


Q ss_pred             HHHHHhCCCCCCcceeeeccc
Q 006333          296 ELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       296 ~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .|.++|||+.. +.++..++|
T Consensus       138 ~v~~~L~LP~~-~~~v~~l~i  157 (240)
T PRK10765        138 AVTELLKLPQH-VLPLFGLCL  157 (240)
T ss_pred             HHHHHhCcCCC-ceeEEEEEE
Confidence            99999999965 567777777

>cd02151 NADPH_oxidoreductase_2 NAD(P)H:flavin oxidoreductase-like family 2

Probab=99.51  E-value=1e-13  Score=133.29  Aligned_cols=127  Identities=16%  Similarity=0.140  Sum_probs=96.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.++|.+||+.                .+.+||++|+|||+++|+... +.+.                .+.
T Consensus        12 R~f~~~~v~~e~l~~il~a----------------a~~aPs~~n~Qp~~f~vv~~~-~~~~----------------~l~   58 (162)
T cd02151          12 RKFTDEPVEKEKVDALLKA----------------ALRAPSSRNRRPWEFIVVTDR-EKLQ----------------ALS   58 (162)
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HHhCcCCCCCCCeEEEEECCH-HHHH----------------HHH
Confidence            4578899999999999998                578999999999999887542 1111                111


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC---------H
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG---------Y  294 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~---------d  294 (650)
                      .....   .+.++.+||++|+++++..+         ..+...|+|+++||++|+|+++|||+||+++|+         +
T Consensus        59 ~~~~~---~~~~~~~Ap~~i~~~~~~~~---------~~~~~~d~g~a~~nl~L~A~~lGlgtc~i~~~~~~~~~~~~~~  126 (162)
T cd02151          59 QAKEH---GSRFLAGAALAIVVVADPRK---------SDVWIEDASIAAIIIQLTAQDLGLGSCWVQIRGRMHDDGKTAE  126 (162)
T ss_pred             Hhhhh---hhhhHhcCCEEEEEEecCCC---------CccHHHHHHHHHHHHHHHHHHCCCCeeEecccccccccchhhH
Confidence            11000   12356789999999988542         123457999999999999999999999998764         5


Q ss_pred             HHHHHHhCCCCCCcceeeeccc
Q 006333          295 KELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       295 ~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +.++++|||+.. +.++++++|
T Consensus       127 ~~~~~~l~lp~~-~~~~~~i~i  147 (162)
T cd02151         127 EYVRRLLNIPEH-LRVLCIIAI  147 (162)
T ss_pred             HHHHHHhCcCCC-ceEEEEEEE
Confidence            789999999975 567888888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02138 Nitroreductase_2 Nitroreductase-like family 2

Probab=99.50  E-value=6.7e-14  Score=137.12  Aligned_cols=134  Identities=17%  Similarity=0.095  Sum_probs=102.1

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++++.++|.+||+.                .+.+||++|++||+++|+....+                .+..+..
T Consensus        17 ~f~~~~v~~e~l~~il~~----------------a~~APs~~n~qpw~f~vv~~~~~----------------~~~~~~~   64 (181)
T cd02138          17 AFDGEPVPREDLLSLLEA----------------ARWAPSAYNDQPWRFVYARRGTE----------------AWEKFLS   64 (181)
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEeCCcHH----------------HHHHHHH
Confidence            467889999999999998                58999999999999887754211                1111111


Q ss_pred             -CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          225 -IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       225 -~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                       ...   ..+.++.+||++|+++++...  .+...+..+++..|+|+++||++|+|+++|||+||+++|+.+.|.++||+
T Consensus        65 ~~~~---~~~~~~~~Ap~~iiv~~~~~~--~~~~~~~~~~~~~d~g~a~~nl~Laa~~lGlgt~~~~~~~~~~l~~~l~l  139 (181)
T cd02138          65 LLVE---GNQGWAKNAPALIAVLSKTTF--DKNEGKPNRTHSFDTGAAWGNLALQATAMGLAAHQMGGFDADKAREELNI  139 (181)
T ss_pred             HHhh---hchhHHhCCCEEEEEEEcccc--cccCCCccchhhhhHHHHHHHHHHHHHHcCcccceecCcCHHHHHHHhCC
Confidence             000   012356789999999998532  22223445688899999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +.. +.++++++|
T Consensus       140 ~~~-~~~~~~lai  151 (181)
T cd02138         140 PED-YEVEAAIAI  151 (181)
T ss_pred             CCC-ceEEEEEEe
Confidence            964 567778888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02150 NADPH_oxidoreductase_1 NAD(P)H:flavin oxidoreductase-like family 1

Probab=99.50  E-value=1.2e-13  Score=133.33  Aligned_cols=129  Identities=18%  Similarity=0.171  Sum_probs=99.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.+||+.                .+.+||++|++||+++|+.+. +-+.                .+.
T Consensus        11 R~f~~~~i~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~~----------------~l~   57 (166)
T cd02150          11 RKYTDEPVSDELIEKILRA----------------AMAAPSAGNQQPWRFVVVRDR-ETLD----------------KLA   57 (166)
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH-HHHH----------------HHH
Confidence            3467889999999999998                578999999999999988542 1111                111


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC----HHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG----YKELKK  299 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~----d~~l~~  299 (650)
                      ....    .+..+.++|++|+++++..+.      +...+..+|+|+++||++|+|+++|||+|++++|+    ++.|.+
T Consensus        58 ~~~~----~~~~~~~ap~~ii~~~~~~~~------~~~~~~~~~~g~a~~nl~Laa~~~Glgt~~~~~~~~~~~~~~~~~  127 (166)
T cd02150          58 ADLP----YAGMLREAPVAIVVCLDPEAE------YERTMWVQDCAAAVQNILLAAHALGLGAVWLGVYPFEERVEKVRE  127 (166)
T ss_pred             Hhcc----cchHHhcCCEEEEEEEccccc------ccccchHhHHHHHHHHHHHHHHHcCCceEEEecccccchHHHHHH
Confidence            1000    123457899999999886442      23456778999999999999999999999999998    688999


Q ss_pred             HhCCCCCCcceeeeccc
Q 006333          300 LMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       300 lLgLd~~~E~v~~~~~i  316 (650)
                      .|||++. +.++++++|
T Consensus       128 ~l~l~~~-~~~~~~l~i  143 (166)
T cd02150         128 LLGLPEN-VEPMAVIPI  143 (166)
T ss_pred             HhCCCCC-cEEEEEEEE
Confidence            9999974 568888888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02148 Nitroreductase_5 Nitroreductase-like family 5

Probab=99.49  E-value=9.7e-14  Score=136.46  Aligned_cols=137  Identities=13%  Similarity=0.026  Sum_probs=99.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.|.+++|+.++|.+||+.                .|.+||++|+|||+++||... +...                ++.
T Consensus        13 R~f~~~~I~~e~l~~ilea----------------a~~APS~~N~Qpw~fvvV~~~-e~~~----------------~l~   59 (185)
T cd02148          13 NGFTDEPVSDEQLRAIYDL----------------VKWGPTAANSQPARFVFVRSA-EAKE----------------RLV   59 (185)
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECH-HHHH----------------HHH
Confidence            3577889999999999998                689999999999999887542 2211                121


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHH-------------Hhhhc--hhhhHHHHHHHHHHHHHHHHHHHcCCceEE
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-------------WKYGE--RAFRYCNHDVGHAIAAVAMAAAELGWDVKI  288 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-------------~KYg~--rayR~~~lDaG~~~q~l~LaA~alGl~~~~  288 (650)
                      +.-..  ..+..+..++++|+++++.....             +.|.+  ...-++..|+|.+++|++|+|+++|||+||
T Consensus        60 ~~~~~--~~~~~~~~ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~lGlgs~~  137 (185)
T cd02148          60 PALSE--GNRAKTLAAPVTAILAYDTEFHEQLPRLFPHRDARSWFFGSPALAEETAFRNSSLQGGYFILAARALGLDAGP  137 (185)
T ss_pred             HHHHH--hhHHHHhcCCEEEEEEecccHHHhHHHhCcchhhhhhhhcChHHHHHHHHHhHHHHHHHHHHHHHHcCCCcCC
Confidence            11000  01234568999998888643211             11111  123356789999999999999999999999


Q ss_pred             ecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          289 LEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       289 i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++||+++.++++|||+.. ..++.+++|
T Consensus       138 ~~g~d~~~~~~~L~lp~~-~~~v~~iav  164 (185)
T cd02148         138 MSGFDAAAVDAEFFADTR-WRSNFVVNI  164 (185)
T ss_pred             CcccCHHHHHHHhCCCCC-eEEEEEEEc
Confidence            999999999999999854 457778888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02137 Nitroreductase_1 Nitroreductase-like family 1

Probab=99.49  E-value=1.3e-13  Score=130.44  Aligned_cols=118  Identities=17%  Similarity=0.180  Sum_probs=94.4

Q ss_pred             CCCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+.++ +++.++|.+||+.                .|.+||++|.+||+++|+... +.+.                .+
T Consensus        11 R~f~~~~~v~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vi~~~-~~~~----------------~l   57 (148)
T cd02137          11 RNFDPDAKIPREELKEILEL----------------ATLAPSSFNLQPWRFVVVRDP-EKKA----------------KL   57 (148)
T ss_pred             cccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEECCH-HHHH----------------HH
Confidence            356776 9999999999998                588999999999999887542 1111                11


Q ss_pred             ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhC
Q 006333          223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMG  302 (650)
Q Consensus       223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLg  302 (650)
                      ....    ..+..+.++|++|+++++.                 |+|+++||++|+|+++|||+||+++|+++.+.++||
T Consensus        58 ~~~~----~~~~~~~~ap~~i~~~~~~-----------------d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~i~~~l~  116 (148)
T cd02137          58 AEAA----MNQPQVTTASAVILVLGDL-----------------NAGLAAMNLMLAARAYGYDTCPMGGFDAEKVAELLN  116 (148)
T ss_pred             HHHH----cCCCccCCCCEEEEEEeCC-----------------hhHHHHHHHHHHHHHcCCCcCcCcCcCHHHHHHHhC
Confidence            1100    0124567899999998874                 999999999999999999999999999999999999


Q ss_pred             CCCCCcceeeeccc
Q 006333          303 LDIFPEFVIPSKPI  316 (650)
Q Consensus       303 Ld~~~E~v~~~~~i  316 (650)
                      |+.. +.++++++|
T Consensus       117 l~~~-~~~~~~i~i  129 (148)
T cd02137         117 LPAR-YVPVMLIAI  129 (148)
T ss_pred             cCCC-ceeEEEEEe
Confidence            9874 567888888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02146 NfsA_FRP This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase

Probab=99.47  E-value=2.9e-13  Score=137.66  Aligned_cols=135  Identities=18%  Similarity=0.239  Sum_probs=100.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.+.|..||+.                .+.+||++|++||+++|+... +...                .+.
T Consensus        12 R~f~~~~V~~e~l~~ilea----------------a~~APS~~N~Qpw~fvVv~~~-~~~~----------------~l~   58 (229)
T cd02146          12 RKFKDEPIPDETLETLIAA----------------AQSAPTSSNLQAYSVIVVTDP-ELKA----------------KLA   58 (229)
T ss_pred             cCCCCCCCCHHHHHHHHHH----------------HHHcCCcccCCceEEEEEcCH-HHHH----------------HHH
Confidence            3577889999999999998                578999999999998776432 1111                121


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhc-----------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE-----------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM  292 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~-----------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f  292 (650)
                      +..    ..+..+.++|++|+++++..+....+..           ..+.+...|+|+++|||+|+|+++|||+||+++|
T Consensus        59 ~~~----~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgtc~ig~~  134 (229)
T cd02146          59 ELA----GGQPYVAQAPVFLVFCADFHRLAKIAEKHGGAEAALDNLESLLVAAVDAGLAAQNAAVAAESLGLGIVYIGGI  134 (229)
T ss_pred             Hhh----cCCchHHhCCEEEEEEeehHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEEccc
Confidence            110    0123466789999999887654322221           2345678899999999999999999999999998


Q ss_pred             C--HHHHHHHhCCCCCCcceeeeccc
Q 006333          293 G--YKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       293 ~--d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .  .+.|+++|||+.. +.++++++|
T Consensus       135 ~~~~~~v~~~L~lp~~-~~~~~~ial  159 (229)
T cd02146         135 RNDPEAVIELLNLPEY-VFPVFGLAV  159 (229)
T ss_pred             ccCHHHHHHHhCCCCC-ceEEEEEEe
Confidence            4  4789999999964 567778888

These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.

>cd03370 NADH_oxidase NADPH_oxidase

Probab=99.46  E-value=4.1e-13  Score=128.32  Aligned_cols=128  Identities=17%  Similarity=0.158  Sum_probs=98.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|..||+.                .+.+||++|++||+++++... +..                ..+.
T Consensus        12 R~f~~~~i~~e~l~~il~~----------------a~~aPs~~n~qp~~~~vv~~~-~~~----------------~~l~   58 (156)
T cd03370          12 RQFDTDPIPEDLLRRLLEA----------------ALRAPSAFNLQPWRIVVVQDP-AQK----------------EALF   58 (156)
T ss_pred             cccCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEEcCH-HHH----------------HHHH
Confidence            4577889999999999998                588999999999999877542 111                1111


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                      ...    ..+..+.+||.+|+++++-.  .+.      +....|+|.++|+++|+|+++|||+||+++|+++.++++|||
T Consensus        59 ~~~----~~~~~~~~ap~~ii~~~~~~--~~~------~~~~~d~~~~~~~l~L~A~~lGlgs~~i~~~~~~~v~~~l~l  126 (156)
T cd03370          59 AAA----LGQPQVLEAPVTVVFVADDY--AWR------AEGLKQAMIAAGFLLLAATALGLATSPMTGFDEEKVKEALGL  126 (156)
T ss_pred             HHh----cCCchhhCCCEEEEEEeCcH--HHH------HHHHHHHHHHHHHHHHHHHHcCCCcccCcCcCHHHHHHHhCc
Confidence            110    01235678999999988731  111      125579999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +.+.+.++++++|
T Consensus       127 ~~~~~~~~~~i~i  139 (156)
T cd03370         127 PGRDRAIAVVVAV  139 (156)
T ss_pred             CCcCceEEEEEEe
Confidence            9845678888888

Nitroreductase family containing NADH oxidase and other, uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PRK05365 malonic semialdehyde reductase; Provisional

Probab=99.45  E-value=3.4e-13  Score=133.73  Aligned_cols=136  Identities=13%  Similarity=-0.055  Sum_probs=99.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|..||..                .|.+||++|++||+++||... +...                .+..
T Consensus        21 ~f~~~~I~~e~l~~ilea----------------a~~APS~~N~QPw~fvvv~~~-e~~~----------------~l~~   67 (195)
T PRK05365         21 GWLDEPVSDEQLRELYDL----------------VKWGPTSANCSPARFVFVRSA-EAKE----------------RLRP   67 (195)
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEeCH-HHHH----------------HHHH
Confidence            467889999999999998                689999999999999887542 2211                1111


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHH--H----------hhh-c--hhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREA--W----------KYG-E--RAFRYCNHDVGHAIAAVAMAAAELGWDVKIL  289 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~--~----------KYg-~--rayR~~~lDaG~~~q~l~LaA~alGl~~~~i  289 (650)
                      .-..  ..+..+.+||++|+++++.....  .          .|. +  ...-++..|+|.+++||+|+|+++|||+||+
T Consensus        68 ~~~~--~~~~~~~~Ap~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~ia~~~l~LaA~~~Glgs~~~  145 (195)
T PRK05365         68 ALSE--GNLAKTLAAPVTAIVAYDTEFHEHLPKLFPHADARSWFAGNPALAEETAFRNSSLQGAYLILAARALGLDAGPM  145 (195)
T ss_pred             HHHh--cCcchhcCCCEEEEEeeCccHhHhHHHhcchhHHHHHHcCCHHHHHHHHHHhhHHHHHHHHHHHHHcCCccCCc
Confidence            0000  01234578999998888643211  0          011 1  1223567899999999999999999999999


Q ss_pred             cccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          290 EGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       290 ~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++|+.+.+.++|||+.. +.++.+++|
T Consensus       146 ~g~~~~~v~~~l~ip~~-~~~v~~ial  171 (195)
T PRK05365        146 SGFDAAAVDAEFFAGTT-WKSNFLVNI  171 (195)
T ss_pred             cccCHHHHHHHhCCCCC-eeEEEEEEe
Confidence            99999999999999864 567788888

>cd02062 Nitro_FMN_reductase Proteins of this family catalyze the reduction of flavin or nitrocompounds using NAD(P)H as electron donor in a obligatory two-electron transfer, utilizing FMN or FAD as cofactor

Probab=99.44  E-value=7.8e-13  Score=120.24  Aligned_cols=111  Identities=19%  Similarity=0.232  Sum_probs=90.2

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.++++.                .+.+||++|++||+++++                           
T Consensus         8 R~f~~~~i~~~~l~~l~~~----------------~~~aPs~~n~qp~~~~~v---------------------------   44 (122)
T cd02062           8 RKFTDEPVPEEVLEKILEA----------------ARYAPSGGNLQPWRFVVV---------------------------   44 (122)
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEE---------------------------
Confidence            4577889999999999998                578999999999999887                           


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHHh
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKLM  301 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~lL  301 (650)
                                   .++|.+|+++++..+..+     ..++..+|+|+++||++++|+++|+++|++++++  ++.++++|
T Consensus        45 -------------~~ap~~i~~~~~~~~~~~-----~~~~~~~~~g~a~~~l~l~a~~~Glg~~~~~~~~~~~~~~~~~l  106 (122)
T cd02062          45 -------------YGAPVLIIVCADKDAARP-----SGPWAEADAGIAAQNILLAAHALGLGSCWIGGLDLVEEELRELL  106 (122)
T ss_pred             -------------eCCCEEEEEEeccccccc-----cCccHHhHHHHHHHHHHHHHHHcCCCchhcCCcccchHHHHHHh
Confidence                         134556666665433221     3456789999999999999999999999999999  99999999


Q ss_pred             CCCCCCcceeeeccc
Q 006333          302 GLDIFPEFVIPSKPI  316 (650)
Q Consensus       302 gLd~~~E~v~~~~~i  316 (650)
                      ||++. |.++.++++
T Consensus       107 ~l~~~-~~~~~~l~~  120 (122)
T cd02062         107 GIPEG-YEILAVIAV  120 (122)
T ss_pred             CcCCC-cEEEEEEEe
Confidence            99975 456666655

They are often found to be homodimers. Enzymes of this family are described as NAD(P)H:FMN oxidoreductases, oxygen-insensitive nitroreductase, flavin reductase P, dihydropteridine reductase, NADH oxidase or NADH dehydrogenase.

>cd02135 Arsenite_oxidase Nitroreductase-like family which includes NADH oxidase and arsenite oxidiase

Probab=99.43  E-value=8.6e-13  Score=125.98  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=97.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.+||+.                .+.+||++|.+||+++|+...  .+..   ++.-  ..+.+....
T Consensus        11 R~f~~~~v~~e~l~~il~a----------------A~~APs~~n~Qpw~f~vv~~~--~~~~---l~~~--~~~~~~~~~   67 (160)
T cd02135          11 KKLTLPAPDREQLEQILEA----------------AARAPDHGKLEPWRFIVIRGE--ARER---LAEL--LAEAAAREP   67 (160)
T ss_pred             hhcCCCCCCHHHHHHHHHH----------------HHhCCCcCCccCeEEEEEech--HHHH---HHHH--HHHHHHhcc
Confidence            4577889999999999998                578999999999999888653  1110   1000  000000000


Q ss_pred             cCCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHH
Q 006333          224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKL  300 (650)
Q Consensus       224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~l  300 (650)
                      ...... ......+.++|++|+++++..+.  +  .........|+|.++||++|+|+++|||+||++++  +++.+.++
T Consensus        68 ~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~--~--~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~  143 (160)
T cd02135          68 GAPEEQIEKAREKALRAPLVIAVVAKPQPH--P--KVPEWEQLLAAGAAIQNLLLAAHALGFGAVWRTGWAAYDPAVREA  143 (160)
T ss_pred             CCCHHHHHHHHccccCCCEEEEEEEecCCC--C--CCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCcccCHHHHHH
Confidence            000000 00124567899999999886432  0  11123356799999999999999999999999875  57889999


Q ss_pred             hCCCCCCcceeeeccc
Q 006333          301 MGLDIFPEFVIPSKPI  316 (650)
Q Consensus       301 LgLd~~~E~v~~~~~i  316 (650)
                      |||+.. +.++++++|
T Consensus       144 l~ip~~-~~~~~~i~l  158 (160)
T cd02135         144 LGLAEG-ERIVGFLYI  158 (160)
T ss_pred             hCCCCC-CEEEEEEEe
Confidence            999975 456677766

NADH oxidase catalyses the oxidation of NAD(P)H and accepts a wide broad range of compounds as electron acceptors, such as nitrocompound. Arsenite oxidase in a beta-proteobacterial strain is able to oxidize arsenite to arsenate.

>cd02144 iodotyrosine_dehalogenase Iodotyrosine dehalogenase catalyzes the removal of iodine from the 3, 5 positions of L-tyosine in thyroid, liver and kidney, using NADPH as electron donor

Probab=99.42  E-value=5.2e-13  Score=131.59  Aligned_cols=151  Identities=13%  Similarity=0.157  Sum_probs=100.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc--cccCCCCeee------EecCC
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI--ESLCDSPFVA------HYAPK  215 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v--~gL~~~pGvY------hY~p~  215 (650)
                      |.+.+++|+.++|.+||+.                .+.+||++|+|||+++|+...-  +.+..   +.      .|...
T Consensus        12 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~vvv~~~~~~~~l~~---~~~~~~~~~~~~~   72 (193)
T cd02144          12 RKFSDEPVPREVIENCIRT----------------AGTAPSGANTQPWTFVVVSDPELKHRIRE---IAEEEERINYEGR   72 (193)
T ss_pred             cCCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEeCCHHHHHHHHH---HHHHHhHHHHHHH
Confidence            4577889999999999998                5889999999999998886431  11110   00      00000


Q ss_pred             -CCchhh-hccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC
Q 006333          216 -EHALEL-RAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG  293 (650)
Q Consensus       216 -~h~L~~-l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~  293 (650)
                       .+.... +...  .....+..+.++|++|+++++..+....+....-.+...|+|.++||++|+|+++|||+|++++|+
T Consensus        73 ~~~~~~~~~~~~--~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~~l~LaA~~~Glgs~~~~~~~  150 (193)
T cd02144          73 MGKEWVWDLKPL--GTNWRKPYLDEAPYLILVFKQKYGGLPDGKKRTHYYNEESVSIACGLLLAALQNAGLGTVTTTPLN  150 (193)
T ss_pred             HHHHHHHHHhhh--hhhhccchhhcCCEEEEEEeeccccCCccccccCCcchhhHHHHHHHHHHHHHHCCCceeecCCcc
Confidence             000000 0000  000012346789999999887532211111111224567999999999999999999999999998


Q ss_pred             H-HHHHHHhCCCCCCcceeeeccc
Q 006333          294 Y-KELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       294 d-~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      . +.++++|||+.. +.++++++|
T Consensus       151 ~~~~v~~~l~ip~~-~~~~~~i~l  173 (193)
T cd02144         151 MGPFLRRLLGRPAN-EKLLMLLPV  173 (193)
T ss_pred             hhHHHHHHhCCCCC-CceEEEEEe
Confidence            7 999999999964 578888888

This enzyme is a homolog of the nitroreductase family. These enzymes are usually homodimers.

>cd02136 Nitroreductase Nitroreductase family

Probab=99.41  E-value=4.2e-13  Score=130.66  Aligned_cols=141  Identities=16%  Similarity=0.139  Sum_probs=98.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+.+++++.++|..||+.                .|.+||++|+|||++||+..++ +.+.   .+|.+...... ...
T Consensus        12 R~f~~~~v~~e~l~~il~~----------------a~~aPs~~n~q~~~f~vv~~~~~~~l~---~~~~~~~~~~~-~~~   71 (178)
T cd02136          12 RAFLPDPVPRETIEEILAA----------------AQRAPSGCNTQPWQVYVVTGEALDRLR---QLYGALGIARE-DKA   71 (178)
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HHhCccccCCCCEEEEEECcHHHHHHH---HHHHHcCCCcc-cHH
Confidence            4577889999999999998                5899999999999999987532 1222   12222111000 000


Q ss_pred             ccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHH
Q 006333          223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKL  300 (650)
Q Consensus       223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~l  300 (650)
                      ...  .....+..+..++++|++++...         .-.+.++|+|+++||++|+|+++|||+||+++|+  ++.++++
T Consensus        72 ~~~--~~~~~~~~~~~ap~~i~~~~~~~---------~~~~~~~~~g~a~~nl~Laa~~lGlgt~~~~~~~~~~~~~~~~  140 (178)
T cd02136          72 GRA--RQALRNFRFFGAPVGLFFTIDRR---------LGPGSALDLGMFLQTIMLAARARGLDTCPQAALAKYPDIVREE  140 (178)
T ss_pred             HHH--HHHhhcccccCCCEEEEEEecCC---------CCcchHHhHHHHHHHHHHHHHHcCCccccccccccCcHHHHHH
Confidence            000  00001123567888888876532         1125678999999999999999999999999986  6889999


Q ss_pred             hCCCCCCcceeeeccc
Q 006333          301 MGLDIFPEFVIPSKPI  316 (650)
Q Consensus       301 LgLd~~~E~v~~~~~i  316 (650)
                      |||+.. +.++++++|
T Consensus       141 l~l~~~-~~~~~~l~i  155 (178)
T cd02136         141 LGIPDD-EMLVCGIAL  155 (178)
T ss_pred             hCCCCC-ceEEEEEEe
Confidence            999975 567777788

Members of this family utilize FMN as a cofactor and catalyze reduction of a variety of nitroaromatic compounds, including nitrofurans, nitrobenzens, nitrophenol, nitrobenzoate and quinones by using either NADH or NADPH as a source of reducing equivalents in an obligatory two-election transfer mechanism. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>cd02145 BluB Subfamily of the nitroreductase family that includes BluB protein in Rhodobacter capsulatus is involved in the conversion of cobinamide to cobalamin in Cobalamin (vitamin B12) biosynthesis

Probab=99.39  E-value=4.6e-13  Score=132.79  Aligned_cols=151  Identities=13%  Similarity=0.010  Sum_probs=102.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhh
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALEL  221 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~  221 (650)
                      |.|.+++|+.++|..||+.                .|.+||++|+|||+++|+...  .+.|.+  .++.+.  . ....
T Consensus        11 R~F~~~~V~~e~i~~ilea----------------A~~APS~~N~Qpw~fvVv~~~~~~~~l~~--~~~~~~--~-~~~~   69 (196)
T cd02145          11 RHFFPDPVPEEVLERLLAA----------------AHHAPSVGLSQPWRFIRVRDPATRAAIKA--LFEEER--A-EAAE   69 (196)
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCHHHHHHHHH--HHHHHH--H-HHHh
Confidence            4577889999999999998                589999999999999888653  122221  010000  0 0000


Q ss_pred             hccCCchhc---cccccCCCCcEEEEEeeechhHHHh-hhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecccCHHH
Q 006333          222 RAKIPSRFD---LFNNFFPKNSFLVGFSSIFWREAWK-YGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKE  296 (650)
Q Consensus       222 l~~~~~~~~---~~~~~~~~a~~~iv~ta~~~r~~~K-Yg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~  296 (650)
                      ....+....   .....+.++|.+++++....+...+ ++.+.++ +...|+|+++|||+|+|+++|||+|++++|+.+.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~ap~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~nl~LaA~~~Glgt~~~~~~~~~~  149 (196)
T cd02145          70 AYPGERAAEYARLKLEGILEAPVNLAVFCDRDRAGGHVLGRATMPEMDLYSVVCAIQNLWLAARAEGLGVGWVSILDPEA  149 (196)
T ss_pred             hccchhHHHHHHHHhhhhhcCCeEEEEEEecccccccCCCccCchhhhhhhHHHHHHHHHHHHHHcCCceEEecccChHH
Confidence            000000000   0112356889988888876543322 3333333 3467999999999999999999999999999999


Q ss_pred             HHHHhCCCCCCcceeeeccc
Q 006333          297 LKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       297 l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +.++|||+.. +.++++++|
T Consensus       150 v~~~l~lp~~-~~~~~~l~l  168 (196)
T cd02145         150 LARLLGIPED-WEPVAYLCL  168 (196)
T ss_pred             HHHHcCcCCC-cEEEEEEEE
Confidence            9999999964 667777788

Nitroreductases typically reduce their substrates by using NAD(P)H as electron donor and often use FMN as a cofactor.

>TIGR02476 BluB cob(II)yrinic acid a,c-diamide reductase

Probab=99.36  E-value=8e-13  Score=132.13  Aligned_cols=151  Identities=13%  Similarity=0.058  Sum_probs=99.1

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE-ecCCCCchhhhc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH-YAPKEHALELRA  223 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh-Y~p~~h~L~~l~  223 (650)
                      .+.+++|+.++|.+||+.                .+.+||++|++||+++|+... +....   +.. +.-.........
T Consensus        21 ~f~~~~i~~e~l~~il~a----------------A~~APS~~n~Qpw~fvvv~~~-e~~~~---l~~~~~~~~~~~~~~~   80 (205)
T TIGR02476        21 HFRSDPVPEAVLERLLDA----------------AHHAPSVGFSQPWRFVRVESP-ATREA---VHALFTRANQAAAAIY   80 (205)
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCH-HHHHH---HHHHHHHHHHHHhhhc
Confidence            477899999999999998                589999999999998887643 11110   000 000000000000


Q ss_pred             cCCchh---ccccccCCCCcEEEEEeeechhH-HHhhhchhh-hHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHH
Q 006333          224 KIPSRF---DLFNNFFPKNSFLVGFSSIFWRE-AWKYGERAF-RYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELK  298 (650)
Q Consensus       224 ~~~~~~---~~~~~~~~~a~~~iv~ta~~~r~-~~KYg~ray-R~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~  298 (650)
                      ......   ......+.++|++|+++.+..+. ...++.+.. .+...|+|+++|||+|+|+++|||+|++++|+.+.|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~aP~~iiv~~~~~~~~~~~~~~~~~~~~~~~~~g~A~~nl~LaA~~~GlGs~~~~~~~~~~v~  160 (205)
T TIGR02476        81 DGERASQYHRLKLEGIREAPVQLAVFCDDARGEGHGLGRHTMPEMLRYSVACAIQNLWLAARAEGLGVGWVSILDPDAVR  160 (205)
T ss_pred             chhhHHHHHHhhhcchhcCCeEEEEEeeccccccccccccccchhhhccHHHHHHHHHHHHHHCCCcceeecccChHHHH
Confidence            000000   00112356899999988875331 111222222 2356799999999999999999999999999999999


Q ss_pred             HHhCCCCCCcceeeeccc
Q 006333          299 KLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       299 ~lLgLd~~~E~v~~~~~i  316 (650)
                      ++|||+.. +.++++++|
T Consensus       161 ~~L~lp~~-~~~~~~l~i  177 (205)
T TIGR02476       161 RLLGVPEG-WRLVAYLCL  177 (205)
T ss_pred             HHhCcCCC-ceEEEEEEe
Confidence            99999954 667788888

The BluB protein is related to the nitroreductase family (pfam0881), and is found to substitute for the FldA cobalt reductase in aerobic species (by phylogenetic profiling). BluB is also found to be preceded by B12 promoter elements elements. The gene in R. capsulatus has been shown to be essential for cobalamin biosynthesis.

>PRK10828 putative oxidoreductase; Provisional

Probab=99.35  E-value=4.6e-12  Score=124.46  Aligned_cols=139  Identities=14%  Similarity=0.107  Sum_probs=95.0

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc-
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA-  223 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~-  223 (650)
                      .+.+++++.++|..||+.                .+.+||++|.+||+++|+...  .+..   +      ...+.... 
T Consensus        15 ~f~~~~v~~e~i~~ilea----------------A~~APS~~N~Qpw~fvvv~~~--~~~~---l------~~~~~~~~~   67 (183)
T PRK10828         15 RLAEPAPTGEQLQNILRA----------------GMRAPDHGSLQPWRFFVIEGE--GRER---F------SALLEQGAI   67 (183)
T ss_pred             ccCCCCcCHHHHHHHHHH----------------HHhCcCcCCccceEEEEEccH--HHHH---H------HHHHHHHHH
Confidence            467889999999999998                689999999999999887542  2210   0      00000000 


Q ss_pred             cCC-chh--ccccccCCCCcEEEEEeeechhHHHhhhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecc--cCHHHH
Q 006333          224 KIP-SRF--DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEG--MGYKEL  297 (650)
Q Consensus       224 ~~~-~~~--~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~--f~d~~l  297 (650)
                      ... ...  ......+..||++|+++++...     +.+... ....|+|.++||++|+|+++|||+||+++  ++++.+
T Consensus        68 ~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~-----~~~~~~~~~~~d~~~a~~nl~LaA~a~GlGs~w~~~~~~~~~~~  142 (183)
T PRK10828         68 AAGSDEKAIEKARNAPFRAPLIITVVAKCEE-----NHKVPRWEQEVSAGCAVMAMQMAAVAQGFNGIWRSGAWTESPVV  142 (183)
T ss_pred             hcCCCHHHHHHHHhhcccCCEEEEEEEecCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCeEeecCCCccCHHH
Confidence            000 000  0011234579999988885321     111112 24679999999999999999999999965  677899


Q ss_pred             HHHhCCCCCCcceeeeccc
Q 006333          298 KKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       298 ~~lLgLd~~~E~v~~~~~i  316 (650)
                      +++|||+.+ +.++++++|
T Consensus       143 ~~~L~ip~~-~~~~~~i~l  160 (183)
T PRK10828        143 REAFGCREQ-DKIVGFLYL  160 (183)
T ss_pred             HHHcCCCCC-CEEEEEEEe
Confidence            999999964 578888888

>PRK11053 dihydropteridine reductase; Provisional

Probab=99.35  E-value=4.8e-12  Score=127.58  Aligned_cols=140  Identities=22%  Similarity=0.176  Sum_probs=98.4

Q ss_pred             CCCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+.+ .+|+.++|..||..                .|.+||++|++||+++||... +.+                +.+
T Consensus        14 R~f~~~~~v~~e~l~~ilea----------------a~~APS~~N~Qpw~fvvV~~~-e~~----------------~~l   60 (217)
T PRK11053         14 KAFDPSKKLPAEQIEQIKTL----------------LRFSPSSVNSQPWHFIVASTE-EGK----------------ARI   60 (217)
T ss_pred             eccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCcCeEEEEecCH-HHH----------------HHH
Confidence            34664 68999999999998                689999999999999887652 221                122


Q ss_pred             ccCCchh-ccccccCCCCcEEEEEeeechhH-H------------Hh----------------h------hc-hhhhHHH
Q 006333          223 AKIPSRF-DLFNNFFPKNSFLVGFSSIFWRE-A------------WK----------------Y------GE-RAFRYCN  265 (650)
Q Consensus       223 ~~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~-~------------~K----------------Y------g~-rayR~~~  265 (650)
                      ...-... ...+..+.+++.+|+++++.... .            .+                |      +. ....+..
T Consensus        61 ~~~~~~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (217)
T PRK11053         61 AKAAAGNYAFNERKILDASHVVVFCAKTDMDDAYLELVLEQEDADGRFATEEAKAAQDKGRRFFADMHRKELKDLQHWME  140 (217)
T ss_pred             HHHHhhhccccchhhcCCCEEEEEEecCCCCHHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHhhhccHHHHHHHHH
Confidence            2110000 00123567899999888752100 0            00                0      00 0112445


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       266 lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .|+|.++|||+|+|+++|||+|+++||+.+.|.+.|||+.+.+.++.+++|
T Consensus       141 ~~~~ia~~~lmLaA~~~Glgs~~i~g~~~~~v~~~l~ip~~~~~~~~~i~l  191 (217)
T PRK11053        141 KQVYLALGNLLLGAAALGIDATPIEGFDAAILDAEFGLREKGLTSSVVVPL  191 (217)
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCcCCcCHHHHHHHhCCCCcCcceEEEEEe
Confidence            589999999999999999999999999999999999999655567888888

>cd02143 NADH_nitroreductase Nitroreductase family

Probab=99.32  E-value=9.9e-12  Score=117.67  Aligned_cols=118  Identities=18%  Similarity=0.093  Sum_probs=93.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|..|++.                .+.+||++|++||+++++...   ...  |               
T Consensus         9 R~F~~~~i~~~~l~~il~a----------------a~~aPs~~n~qp~~f~vv~~~---~~~--~---------------   52 (147)
T cd02143           9 RHYRPEPVPRETIERLLDI----------------ARYAPTGSNSQPVHFTVVDDP---WEK--G---------------   52 (147)
T ss_pred             ecCCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEeCH---HHc--C---------------
Confidence            4577889999999999998                578999999999997766432   000  0               


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH-----HHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY-----KELK  298 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d-----~~l~  298 (650)
                              .+..+.++|.+|+++++..+.          ....|+|.++||++|+|+++|+|+||+++|+.     +.++
T Consensus        53 --------~~~~~~~ap~~i~~~~~~~~~----------~~~~d~g~a~~~l~LaA~~lGlgs~~~~~~~~~~~~~~~~~  114 (147)
T cd02143          53 --------IDPIFRGAPHLLLASAPRDFP----------TAQVDAIIALTYFELAAQALGLGTCWAGFFQAAAELYPPLR  114 (147)
T ss_pred             --------cCceecCCCEEEEEEECCCCC----------CccchHHHHHHHHHHHHHHcCCCEehhhhHHHHhhhhHHHH
Confidence                    012356889999888864321          34679999999999999999999999998874     8999


Q ss_pred             HHhCCCCCCcceeeeccc
Q 006333          299 KLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       299 ~lLgLd~~~E~v~~~~~i  316 (650)
                      ++|+|+.. +.++++++|
T Consensus       115 ~~l~lp~~-~~~~~~iai  131 (147)
T cd02143         115 DRLGLPEG-HKVGYAMMF  131 (147)
T ss_pred             HHcCcCCC-cEEEEEEEE
Confidence            99999965 568888888

Members of this family utilize FMN as a cofactor. This family is involved in the reduction of flavin or nitroaromatic compounds by using NAD(P)H as electron donor in a obligatory two-electron transfer. Nitrogenase is homodimer. Each subunit contains one FMN molecule. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>TIGR03553 F420_FbiB_CTERM F420 biosynthesis protein FbiB, C-terminal domain

Probab=99.31  E-value=7.1e-12  Score=123.95  Aligned_cols=148  Identities=12%  Similarity=0.045  Sum_probs=97.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhh
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALEL  221 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~  221 (650)
                      |.+.+++|+.++|..||..                .+.+||++|++||+++|+...  .+.|..   .+.    +.....
T Consensus        10 R~f~~~~V~~e~l~~il~a----------------A~~APS~~n~Qpw~fvvv~~~e~~~~l~~---~~~----~~~~~~   66 (194)
T TIGR03553        10 RRFSDDPVDPDAVRAAVAA----------------ALTAPAPHHTRPVRFVWVEDAERRTRLLD---AMA----DAWRAD   66 (194)
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCHHHHHHHHH---HHH----HHHHHh
Confidence            4577889999999999998                588999999999998877652  122211   000    000000


Q ss_pred             hc--cCCchh--c--cccccCCCCcEEEEEeeechhHHHhhhc--h---hhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333          222 RA--KIPSRF--D--LFNNFFPKNSFLVGFSSIFWREAWKYGE--R---AFRYCNHDVGHAIAAVAMAAAELGWDVKILE  290 (650)
Q Consensus       222 l~--~~~~~~--~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~--r---ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~  290 (650)
                      ..  ......  .  ..+..+.++|.+|+++..... ...+.+  +   .......|+|.++||++|+|+++|||+||++
T Consensus        67 ~~~~~~~~~~~~~~~~~~~~~~~ap~~iv~~~~~~~-~~~~~~~~~~~~~~~~~~~~~g~a~qnl~LaA~~~Glgt~~~~  145 (194)
T TIGR03553        67 LRADGLSADAIDRRVARGDILRDAPELVIPCLVPDG-AHSYPDERRTAAEHTMFTVAVGAAVQNLLVALAVEGLGSCWVG  145 (194)
T ss_pred             hhhccCchHHHHHHhhhhhhHhcCCeEEEEEEcccc-cccCCcccccccchhhHHhHHHHHHHHHHHHHHHcCCCeEEec
Confidence            00  000000  0  011245688998888764221 111211  1   1123357999999999999999999999999


Q ss_pred             c--cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 G--MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 ~--f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +  |+.+.|.++|||+.+ +.++++++|
T Consensus       146 ~~~~~~~~v~~~l~lp~~-~~~~~~i~i  172 (194)
T TIGR03553       146 STIFAADVVRAELDLPAD-WEPLGAVAV  172 (194)
T ss_pred             CcccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence            8  889999999999964 567788888

Coenzyme F420 differs between the Archaea and the Actinobacteria, where the numbers of glutamate residues attached are 2 (Archaea) or 5-6 (Mycobacterium). The enzyme in the Archaea is homologous to the N-terminal domain of FbiB from Mycobacterium bovis, and is responsible for glutamate ligation. Therefore it seems likely that the C-terminal domain of FbiB, modeled by this alignment, is involved in additional glutamate ligation.

>cd02140 Nitroreductase_4 Nitroreductase-like family 4

Probab=99.18  E-value=7.5e-11  Score=116.67  Aligned_cols=146  Identities=15%  Similarity=0.015  Sum_probs=90.4

Q ss_pred             CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+.+ .+++.++|..||..+               .|.+||++|++||++||+.+.  .+..   +     ..-....+.
T Consensus        13 ~f~~~~~V~~e~l~~ileaA---------------~~~APS~~N~QPW~f~Vv~~~--~~~~---~-----~~~~~~~~~   67 (192)
T cd02140          13 ALGKNLPVSDDEIEEIVKEA---------------VKHSPSSFNSQSSRAVILFGE--EHEK---L-----WDIVKDTLR   67 (192)
T ss_pred             ccCCCCCCCHHHHHHHHHHH---------------HHhCCCCCCCCCeEEEEEECh--HHHH---H-----HHHHHHHHH
Confidence            4665 589999999999971               278999999999999998864  1110   0     000000111


Q ss_pred             cCCc-hh-c-cc--cccCCCCcEEEEEeeechhHH------HhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec--
Q 006333          224 KIPS-RF-D-LF--NNFFPKNSFLVGFSSIFWREA------WKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE--  290 (650)
Q Consensus       224 ~~~~-~~-~-~~--~~~~~~a~~~iv~ta~~~r~~------~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~--  290 (650)
                      .... .. . ..  ......++.++++.+...+..      ..|......+..+|+|.++|||+|+|+++|||+|+.+  
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~a~~nl~LaA~~~GlGs~~~~~~  147 (192)
T cd02140          68 AIVPAEAFAATKEKLDGFKAGYGTVLFFEDQAVVKGLQEKFPLYADNFPVWSEQSSGMAQIAVWTALAAEGIGANLQHYN  147 (192)
T ss_pred             hcCChhhcccchhHHHHHHHhhceeeeeechHHHHHHHHHhHHHHhhCccchhhhhHHHHHHHHHHHHhCCCcccHHHhC
Confidence            1000 00 0 00  001234444455444422111      1122223345677999999999999999999999654  


Q ss_pred             ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 ~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .+.++.++++||++. ++.++++++|
T Consensus       148 ~~~~~~v~~~l~ip~-~~~~v~~i~l  172 (192)
T cd02140         148 PLIDEEVAKKWNIPS-NWKLRAQLVF  172 (192)
T ss_pred             ccCCHHHHHhcCCCc-cceEEEEeec
Confidence            234599999999995 4678888888

A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.

>PRK13294 F420-0--gamma-glutamyl ligase; Provisional

Probab=99.14  E-value=2.2e-10  Score=126.69  Aligned_cols=148  Identities=13%  Similarity=0.074  Sum_probs=98.3

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeee-EecCCCCchhh
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVA-HYAPKEHALEL  221 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvY-hY~p~~h~L~~  221 (650)
                      .|.+++++.++|.+||+.                .+.+||++|+|||.++|+...  .+.|..  -+. .+..   .+..
T Consensus       265 ~F~~~pVp~E~I~~ILeA----------------A~~APS~~N~QPWrFVVV~d~e~r~kL~~--~~~~~~~~---~l~~  323 (448)
T PRK13294        265 EFSDDPVDPEAVRRAVAA----------------ALTAPAPHHTRPVRFVWLRSAAVRTRLLD--AMRDAWRA---DLRA  323 (448)
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCHHHHHHHHH--HHHHHHHH---hhhh
Confidence            467889999999999998                689999999999999988653  111210  000 0000   0000


Q ss_pred             hccCCchh--c--cccccCCCCcEEEEEeeechhHHHhhhc--h---hhhHHHHHHHHHHHHHHHHHHHcCCceEEecc-
Q 006333          222 RAKIPSRF--D--LFNNFFPKNSFLVGFSSIFWREAWKYGE--R---AFRYCNHDVGHAIAAVAMAAAELGWDVKILEG-  291 (650)
Q Consensus       222 l~~~~~~~--~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~--r---ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~-  291 (650)
                       .......  .  ..+..+.++|++|+++...... ..|.+  +   -..+...|+|.++|||+|+|+++||++||+++ 
T Consensus       324 -~~~~~~~~~~~~~~~~~~~~AP~lIvv~~~~~~~-~~~~~~~~~~~e~~~~~~daG~AaqNL~LAA~alGLGScwig~~  401 (448)
T PRK13294        324 -DGLSEESIARRVRRGDILYDAPELVVPFLVPDGA-HSYPDARRTAAERTMFTVAVGAAVQNLLVALAVEGLGSCWIGST  401 (448)
T ss_pred             -ccccHHHHHHHhhhcchhhcCCeEEEEEEecccc-ccccccccchhhhHHHHHHHHHHHHHHHHHHHHCCCcEEEeccc
Confidence             0000000  0  0123467899988887653211 11211  1   11245689999999999999999999999987 


Q ss_pred             -cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 -MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 -f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                       |+.+.++++|||+.+ +.++++++|
T Consensus       402 ~~d~~~Vre~LgLPe~-~~~v~~IaI  426 (448)
T PRK13294        402 IFAADVVRAVLDLPAD-WEPLGAVAI  426 (448)
T ss_pred             ccChHHHHHHhCcCCC-cEEEEEEEE
Confidence             889999999999964 567888888

>COG0778 NfnB Nitroreductase [Energy production and conversion]

Probab=99.00  E-value=1.7e-09  Score=106.32  Aligned_cols=137  Identities=21%  Similarity=0.265  Sum_probs=96.2

Q ss_pred             CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+. ++|++.++|..||+.                .+.+||++|++||.++++....+..                ..+.
T Consensus        17 ~f~~~~pi~~e~l~~il~a----------------a~~aPs~~n~qpw~fi~v~~~~~~~----------------~~l~   64 (207)
T COG0778          17 KFDSPKPIPEEDLEKILEA----------------ARLAPSAGNLQPWRFIVVRDEDELK----------------AALA   64 (207)
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCcCccCCcceEEEEEcCcHHHH----------------HHHH
Confidence            466 799999999999998                5889999999999988776542111                1111


Q ss_pred             cCCchhccccccCCCCcEEEEEeeech-----------------------hHHHhhhch-hhhHHHHHHHHHHHHHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFW-----------------------REAWKYGER-AFRYCNHDVGHAIAAVAMAA  279 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~-----------------------r~~~KYg~r-ayR~~~lDaG~~~q~l~LaA  279 (650)
                      +....   .+..+.+++..+++.++..                       +..++|+.+ ..++.+.++++++||++|+|
T Consensus        65 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~nl~Laa  141 (207)
T COG0778          65 ELAGG---GQAQLKEASALLAVLADLESLDKVAEGRAPDLGAAVFLLAERRKLLGYGRRAALEYALDAASIAAQNLLLAA  141 (207)
T ss_pred             Hhhhh---hhhhcccCCeEEEEEeehhhhhhcccccccHHHHHHHhcccchhhcccchhhhHHHHHHHHHHHHHHHHHHH
Confidence            10000   0123445555555555432                       233344543 46778888888999999999


Q ss_pred             HHcCCceEEecccCHHHHHHHhCCCCC---Ccceeeeccc
Q 006333          280 AELGWDVKILEGMGYKELKKLMGLDIF---PEFVIPSKPI  316 (650)
Q Consensus       280 ~alGl~~~~i~~f~d~~l~~lLgLd~~---~E~v~~~~~i  316 (650)
                      +++|+++|++++|+.+.+.+.++++..   .+.++.++++
T Consensus       142 ~~~Glg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l  181 (207)
T COG0778         142 EALGLGSCWIGGFDAEDLKELLRELLGLPEEEKPVGLLAL  181 (207)
T ss_pred             HHcCCCcccCccccHHHHHHHHhcccccCcceeEEEEEEe
Confidence            999999999999999999888887642   2667777777

>PRK07877 hypothetical protein; Provisional

Probab=98.77  E-value=5.2e-07  Score=105.17  Aligned_cols=58  Identities=12%  Similarity=0.276  Sum_probs=45.8

Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCccc-----------------------hHHHHhHhCCCCCCceEEEEEEcccc
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGCFF-----------------------DDPVHEVLGLTGSKFQSLYHFTVGGP  631 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~-----------------------dd~v~e~LgL~~~~~~~ly~~avG~p  631 (650)
                      .-++.+|.+.|.+.|.|+++||..|++.-.+                       .+.++++||++. +..+.+++=||++
T Consensus       624 ~d~lraGrAlqRvwL~AT~~GLA~~Pls~v~l~~r~~~~~~~ls~~~~~el~~lr~~l~~llg~~~-~~~pq~l~RlG~a  702 (722)
T PRK07877        624 TDYARGGSAMEAVWIAAQQLGLAVQPVSPVFLYARNRGELEGLSPEFADELGRLQKRFRELVGIGA-DEAEVLLFRLSHA  702 (722)
T ss_pred             HHHHHHHHHHHHHHHHHHhcchhhCCccchhhhccccccccccccchhhhHHHHHHHHHHHhCCCC-CCceEEEEEcccC
Confidence            3479999999999999999999999995531                       134578888875 3468888899986


Q ss_pred             CC
Q 006333          632 VV  633 (650)
Q Consensus       632 ~~  633 (650)
                      ..
T Consensus       703 ~~  704 (722)
T PRK07877        703 PP  704 (722)
T ss_pred             CC
Confidence            55

>PRK14851 hypothetical protein; Provisional

Probab=98.35  E-value=4.3e-05  Score=89.09  Aligned_cols=57  Identities=16%  Similarity=0.223  Sum_probs=42.2

Q ss_pred             HHHHHHhHHHHHHHHHHHHcCCCeeeeCc---cc-h---------------------HHHHhHhCCCC-CCceEEEEEEc
Q 006333          575 RLFWETGVLGQVLYLEAHAVGISATGIGC---FF-D---------------------DPVHEVLGLTG-SKFQSLYHFTV  628 (650)
Q Consensus       575 ~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~---f~-d---------------------d~v~e~LgL~~-~~~~~ly~~av  628 (650)
                      ..++.+|.+.|.+.|+|+++||..|++.-   |. .                     ....++++.++ .+...+++|=|
T Consensus       578 ~d~lraGrAlqRvwL~AT~~GLA~~Pls~~~l~~~r~~~~~~~~ls~~~~~~l~~l~~~~~~l~~~~~~~~~~~v~~~R~  657 (679)
T PRK14851        578 RDFLLGGQALERIWLTLEHHGLQMQPMTAVTLFWLRWLLEGPSSFSEKHRKLLERIWQDYKGLFASVDFEKQGQVMLFRF  657 (679)
T ss_pred             HHHHHHHHHHHHHHHHHHhccHhhCcccHHHHHhhhhccCCcccCCHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEEEe
Confidence            45799999999999999999999999853   21 1                     23556677752 24567788888


Q ss_pred             ccc
Q 006333          629 GGP  631 (650)
Q Consensus       629 G~p  631 (650)
                      |+.
T Consensus       658 ~~a  660 (679)
T PRK14851        658 GYG  660 (679)
T ss_pred             ecC
Confidence            864

>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A

Probab=97.59  E-value=0.00021  Score=71.07  Aligned_cols=44  Identities=16%  Similarity=0.192  Sum_probs=30.9

Q ss_pred             HHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCC
Q 006333          577 FWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVV  633 (650)
Q Consensus       577 ~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~  633 (650)
                      +.++|.++|.|.|-|+.+|||+||+|.-           +..  ...+.+++|++..
T Consensus        65 l~n~GY~gEqlvL~l~~lGLgTCWvg~~-----------~~~--dl~~vI~~Gyg~~  108 (206)
T PF14512_consen   65 LENAGYYGEQLVLYLQSLGLGTCWVGRS-----------PNP--DLPCVIAFGYGKT  108 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-EEEEES-------------SST--T-S-EEEEE-BS-
T ss_pred             HHhcCHHHHHHHHHHHHcCCcceeeccc-----------ccC--CceEEEEEeccCC
Confidence            5789999999999999999999999842           111  2457789998754

>PRK14852 hypothetical protein; Provisional

Probab=97.36  E-value=0.0073  Score=72.44  Aligned_cols=55  Identities=13%  Similarity=0.090  Sum_probs=42.5

Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCc---cc----------------------hHHHHhHhCCCCCCceEEEEEEccc
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGC---FF----------------------DDPVHEVLGLTGSKFQSLYHFTVGG  630 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~---f~----------------------dd~v~e~LgL~~~~~~~ly~~avG~  630 (650)
                      -++.+|...|.+.|.|+.+||+-.||..   |.                      ...+.++++++. +...+++|=+|+
T Consensus       890 dy~rgG~a~ervWl~A~~lGLavqP~s~l~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~~R~~~  968 (989)
T PRK14852        890 DIARAGMAWQRAWCALEHMGYAMQPLAALPLLHLRLAMGDPQTLDTAHQRLLEEAWTLLEQVLPHPK-GRLPVMMFRAGV  968 (989)
T ss_pred             HHHHHhHHHHHHHHHHHhCCcccCccchHHHHHHhhhcCccccCCHHHHHHHHHHHHHHHHHcCCCC-CcceeEEEEeec
Confidence            3689999999999999999999999952   22                      124667888886 446777777775


Q ss_pred             c
Q 006333          631 P  631 (650)
Q Consensus       631 p  631 (650)
                      .
T Consensus       969 ~  969 (989)
T PRK14852        969 A  969 (989)
T ss_pred             C
Confidence            3

>PRK14851 hypothetical protein; Provisional

Probab=96.62  E-value=0.0093  Score=69.91  Aligned_cols=45  Identities=16%  Similarity=0.128  Sum_probs=37.5

Q ss_pred             CcHHHHHHhcCCCCCCCCCCC-----------CCHHHHHHHHHHhc--cCCCcchhhhhcccCCCccc
Q 006333          414 FTVREVVRKRRSAVDMDGVTA-----------IDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRV  468 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~-----------I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~  468 (650)
                      ..+.+.+..|+|.|.|.. .+           ++.+++..|++++.  ||+.         |.|||++
T Consensus       292 ~di~~~iL~r~s~r~~~~-~p~~~~~~~~~~~v~~~~i~~i~~aa~~APs~~---------N~Qpw~f  349 (679)
T PRK14851        292 LWYVQNVLIRNTDQARVR-EPEPPVSVAHFDSLPQGVGDYILQAGIQAPSGD---------NVQPWQF  349 (679)
T ss_pred             HHHHHHHhcccCCCCCCC-CCCccccccccCCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE
Confidence            455566779999999986 78           99999999999986  8875         6799993

>COG3560 FMR2 Predicted oxidoreductase related to nitroreductase [General function prediction only]

Probab=95.25  E-value=0.21  Score=48.12  Aligned_cols=165  Identities=13%  Similarity=0.190  Sum_probs=98.5

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc---cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL---PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~---Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      +++.+.|.+|||.=.-.+.-+++.+++.+|++.+.   ||+.|         .|+-|.          |+..+-+     
T Consensus         4 ~~~~~ai~~RRTiYaL~k~lp~~~e~i~~~v~~avk~tPsaFN---------SQssR~----------ViL~gd~-----   59 (200)
T COG3560           4 MTFLNAIENRRTIYALKKNLPVSDEEIKEIVKEAVKHTPSAFN---------SQSSRV----------VILFGDE-----   59 (200)
T ss_pred             hHHHHHHHhhhhHhhcCCCCCCcHHHHHHHHHHHHhcCCcccc---------cCCceE----------EEEeccc-----
Confidence            57889999999998887767899999999999886   88763         455552          3332200     


Q ss_pred             eeeecCCcc----hhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh
Q 006333          491 LYFLVRNED----HLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS  566 (650)
Q Consensus       491 lY~y~~~~~----~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~  566 (650)
                            ...    ..+.|+..+..                     +.+....+.+.+    ...+.-+|.+.-|-. ...
T Consensus        60 ------h~KlWdivk~~l~~ivp~---------------------~~f~~t~~ki~~----f~ag~GtVLFfeDq~-Vv~  107 (200)
T COG3560          60 ------HDKLWDIVKDELRAIVPA---------------------EAFEATERKIDS----FKAGYGTVLFFEDQN-VVK  107 (200)
T ss_pred             ------hHHHHHHHHHHHHHhccc---------------------ccccccccccch----hhhccceEEEEecch-HHH
Confidence                  011    11123333221                     111111112222    122333444444422 211


Q ss_pred             cccc-c-cch-----HHHHHHhHHHHHHHHHHHHcCCCeeee--CccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          567 NKNV-W-MYP-----RLFWETGVLGQVLYLEAHAVGISATGI--GCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       567 ~yg~-~-~Yr-----~~~~eaG~i~Q~L~LaA~alGlg~~~I--g~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ..-+ . .|-     ..-.-.|++--+...+-+++|+|+.-.  ..+-|+++.+..+||. .|..-..|.+|.+....
T Consensus       108 ~LQeqfplYadnFPvwseqtsgm~Q~~vWtALa~~GlGAsLQHYNplidaa~~k~wniP~-sW~lraQmpFG~~~a~~  184 (200)
T COG3560         108 GLQEQFPLYADNFPVWSEQTSGMAQIAVWTALAALGLGASLQHYNPLIDAAVAKEWNIPE-SWKLRAQMPFGSIEAPA  184 (200)
T ss_pred             HHHHHhHHHHhhCcchhhhcccHHHHHHHHHHHHcccccchhhcchhHHHHhhhhcCCCc-cceeeeecccCCCCCCC
Confidence            1100 0 111     123456777777888888999999765  3467899999999998 79999999999876554

>PRK07877 hypothetical protein; Provisional

Probab=95.19  E-value=0.099  Score=61.76  Aligned_cols=49  Identities=12%  Similarity=-0.133  Sum_probs=36.4

Q ss_pred             chHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333          573 YPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPV  632 (650)
Q Consensus       573 Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~  632 (650)
                      +|.+++.+|++.|||.|+|.++|+++|+.-          +.... +..++..+.+|+..
T Consensus       421 ~r~~~iS~GAAleNL~LAA~a~Gl~~~~~~----------~p~~~-~~~l~a~i~l~~~~  469 (722)
T PRK07877        421 YRGSAVAVGAALFNARVAAAAHGLLGPVEF----------FPGDE-GSPLRATLRFGRGD  469 (722)
T ss_pred             cchHHHHHHHHHHHHHHHHHHCCCCeeEEE----------CCCCC-CccceEEEeccCCC
Confidence            577889999999999999999999999942          22222 23456667777543

>PRK14852 hypothetical protein; Provisional

Probab=88.37  E-value=1.5  Score=53.21  Aligned_cols=43  Identities=14%  Similarity=-0.068  Sum_probs=32.0

Q ss_pred             eeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeee
Q 006333          558 VAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGI  601 (650)
Q Consensus       558 ~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~I  601 (650)
                      .+|.++.+..+ +-.+|.+++.||++..||-++|.++|+.+..-
T Consensus       647 ~~D~sR~lpv~-Dp~gR~l~IScGAALeNLrvAAaa~G~~~~V~  689 (989)
T PRK14852        647 HLDRQADGSFF-DYRHVASLLACGAAVQNAVYASGSAGLDATLS  689 (989)
T ss_pred             EecCccCCCCc-CccchHHHHHHHHHHHHHHHHHHhCCCceeEE
Confidence            33444443332 33578999999999999999999999998543

>PF14512 TM1586_NiRdase: Putative TM nitroreductase; PDB: 1VKW_A

Probab=83.45  E-value=1.3  Score=44.30  Aligned_cols=26  Identities=12%  Similarity=0.065  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEec
Q 006333          265 NHDVGHAIAAVAMAAAELGWDVKILE  290 (650)
Q Consensus       265 ~lDaG~~~q~l~LaA~alGl~~~~i~  290 (650)
                      +.++|...|.+.|-|+++|||+||++
T Consensus        65 l~n~GY~gEqlvL~l~~lGLgTCWvg   90 (206)
T PF14512_consen   65 LENAGYYGEQLVLYLQSLGLGTCWVG   90 (206)
T ss_dssp             HHHHHHHHHHHHHHHHHTT-EEEEES
T ss_pred             HHhcCHHHHHHHHHHHHcCCcceeec
Confidence            56899999999999999999999997

>KOG3936 consensus Nitroreductases [Energy production and conversion]

Probab=83.34  E-value=0.96  Score=38.27  Aligned_cols=34  Identities=18%  Similarity=0.190  Sum_probs=29.5

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC  447 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a  447 (650)
                      +..|.+.+.+|||+|.|.. ..++.+.+..+|..+
T Consensus        65 SQ~FYEelk~RRScR~fSn-~dVPleVI~NlikTA   98 (100)
T KOG3936|consen   65 SQEFYEELKKRRSCRFFSN-EDVPLEVIDNLIKTA   98 (100)
T ss_pred             HHHHHHHHHhhhhhhhhcc-ccCcHHHHHHHHHhc
Confidence            3568899999999999998 789999999988654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	650
3eo7_A	511	Crystal Structure Of A Putative Nitroreductase (Ava		1e-10
3eo7_A	511	Crystal Structure Of A Putative Nitroreductase (Ava		1e-04

>pdb|3EO7|A Chain A, Crystal Structure Of A Putative Nitroreductase (Ava_2154) From Anabaena Variabilis Atcc 29413 At 1.80 A Resolution Length = 511

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 62/265 (23%), Positives = 103/265 (38%), Gaps = 30/265 (11%)
Query: 72  YHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYN 131
           YH++TK+     A     LDWA QP PF+ Y     + L        +  +TP      N
Sbjct: 13  YHERTKYDPETIASKSQRLDWAKQPVPFKEYKIGSAIDL------KPYLQETPEVFV--N 64
Query: 132 HDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPT 191
             N   +  L               S+L + S  L+A   +  +T  LR  PS+G L+P 
Sbjct: 65  DTNGQWWQRL---------------SRLLFRSYGLTARXPSXGNTVYLRAAPSAGGLYPA 109
Query: 192 EAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDLFNNFF-----PKNSFLVGFS 246
           E Y+++     L  SP + +Y  + H+L    +      L    F           +  +
Sbjct: 110 EVYVVSRGTPLL--SPGLYNYQCRTHSLIHYWESDVWQSLQEACFWHPALESTQLAIIVT 167
Query: 247 SIFWREAWKYGERAFRYCNHDVGHXXXXXXXXXXELGWDVKILEGMGYKELKKLMGLDIF 306
           ++F+R AW+Y +RA+R    D GH             +   ++ G   + +  L+ +D  
Sbjct: 168 AVFYRSAWRYEDRAYRRICLDTGHLLGNIELSAAITDYRPHLIGGFIDEAVNDLLYIDPL 227
Query: 307 PEFVIPSKPIKGKIPEIEFEHPDCV 331
            E  I   P+   +   +   P C 
Sbjct: 228 QEGAIAVLPLADLLDIQQNISPGCT 252

>pdb|3EO7|A Chain A, Crystal Structure Of A Putative Nitroreductase (Ava_2154) From Anabaena Variabilis Atcc 29413 At 1.80 A Resolution Length = 511

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 1/91 (1%)
Query: 541 LSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATG 600
           L   Q++  D    +   +  +  ++     +Y  L  + G LGQ L L A  + +  +G
Sbjct: 421 LCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHXDAGHLGQRLNLAAIQLNLGVSG 480
Query: 601 IGCFFDDPVHEVLGLTGSKFQSLYHFTVGGP 631
           IG FFDD V+EVLG+   +   +Y  T+G P
Sbjct: 481 IGGFFDDQVNEVLGIPNDE-AVIYITTLGRP 510

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	650
3eo7_A	511	Putative nitroreductase; structural genomics, join	1e-100
3hj9_A	223	Oxidoreductase; structural genomics, joint center	9e-28
3hj9_A	223	Oxidoreductase; structural genomics, joint center	1e-14
3hoi_A	193	FMN-dependent nitroreductase BF3017; YP_212631.1,	4e-27
3hoi_A	193	FMN-dependent nitroreductase BF3017; YP_212631.1,	2e-12
2fre_A	200	NAD(P)H-flavin oxidoreductase; FMN, structural gen	1e-04

>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413} Length = 511

 Score =  315 bits (809), Expect = e-100
 Identities = 109/576 (18%), Positives = 202/576 (35%), Gaps = 74/576 (12%)

Query: 62  DPRKLSHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMH-LPNRTDHR 120
                S    YH++TK+     A     LDWA QP PF+ Y     + L   L    +  
Sbjct: 3   PEIHQSIAQHYHERTKYDPETIASKSQRLDWAKQPVPFKEYKIGSAIDLKPYLQETPEVF 62

Query: 121 TQTPSSLSNYNHDNAPLYSSLFTSLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR 180
                                              +S+L + S  L+A   +  +T  LR
Sbjct: 63  V------------------------NDTNGQWWQRLSRLLFRSYGLTARMPSMGNTVYLR 98

Query: 181 VNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFDL-----FNNF 235
             PS+G L+P E Y+++     L  SP + +Y  + H+L    +      L     ++  
Sbjct: 99  AAPSAGGLYPAEVYVVSRGTPLL--SPGLYNYQCRTHSLIHYWESDVWQSLQEACFWHPA 156

Query: 236 FPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYK 295
                  +  +++F+R AW+Y +RA+R    D GH +  + ++AA   +   ++ G   +
Sbjct: 157 LESTQLAIIVTAVFYRSAWRYEDRAYRRICLDTGHLLGNIELSAAITDYRPHLIGGFIDE 216

Query: 296 ELKKLMGLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEE 355
            +  L+ +D   E  I   P+   +   +   P C         T      E     + +
Sbjct: 217 AVNDLLYIDPLQEGAIAVLPLADLLDIQQNISPGC---------TALPSATETNYPQVPD 267

Query: 356 FSALDWKGKPNLLSKEHFCWDIIYSTAEVVKKPLTIRNAFSVDPFSSSGVCSESSYKGFT 415
              L +      +S        + +  +           F     S+             
Sbjct: 268 GELLKYFHHHTQISASITGKLNLPTVIQEKSLEDKYNFPF-CLKISTVSAPIYWGENLSD 326

Query: 416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEV 475
           +   + KRRS    +G   +  +    ++        ++   Q    +  Y  L+    +
Sbjct: 327 LEITMHKRRSTRAYNG-EELTFDELKALLDFTY--QPQNYIDQSLDNSPDYFDLN---LI 380

Query: 476 HAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQ 535
              + +  V+GL  G Y+                           P+   L ++   + +
Sbjct: 381 ETFIAVCGVQGLEAGCYYY-------------------------APKAQELRQIRFKNFR 415

Query: 536 QLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVG 595
           +    L   Q++  D    +   +  +  ++     +Y  L  + G LGQ L L A  + 
Sbjct: 416 RELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLN 475

Query: 596 ISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGP 631
           +  +GIG FFDD V+EVLG+   +   +Y  T+G P
Sbjct: 476 LGVSGIGGFFDDQVNEVLGIPNDE-AVIYITTLGRP 510

>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha} Length = 223

 Score =  110 bits (277), Expect = 9e-28
 Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 15/158 (9%)

Query: 148 PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSP 207
            QPL +  +S+L + +  ++       S    R  PS       + Y+  P         
Sbjct: 57  QQPLPLKQLSELLWAAAGVNR------SLGGGRTAPSPYGETVIDVYVALP--------A 102

Query: 208 FVAHYAPKEHALELRAKIPSR-FDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNH 266
            +  Y P  H LEL+     R    + +F       + F +   R      +    +   
Sbjct: 103 GLYRYDPVHHCLELKRAADLRSMTGYQDFVGMAPLDLVFVANHGRMQEMPPKLRETFSAA 162

Query: 267 DVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLD 304
             G       +  A  G    +   +  ++L + M L+
Sbjct: 163 AAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLN 200

>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha} Length = 223

 Score = 72.6 bits (178), Expect = 1e-14
 Identities = 34/230 (14%), Positives = 60/230 (26%), Gaps = 53/230 (23%)

Query: 413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWD 472
           G  +   +  R+S  + D    +  +   ++ L      +RS                  
Sbjct: 39  GMPLMGTLWLRKSTREFDQ-QPLPLKQLSEL-LWAAAGVNRSLGG-----------GRTA 85

Query: 473 AEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARG 532
              +    I     LP GLY                            P    L      
Sbjct: 86  PSPYGETVIDVYVALPAGLYRY-------------------------DPVHHCLELKRAA 120

Query: 533 DCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR-----LFWETGVLGQVL 587
           D + +      +QD  G     L  VA+       +   M P+          G + +  
Sbjct: 121 DLRSMT----GYQDFVGMAPLDLVFVANHG-----RMQEMPPKLRETFSAAAAGAMAENA 171

Query: 588 YLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI 637
           YL   + G+ A   G      + E + L   + + +   T+G        
Sbjct: 172 YLYCASAGLGAVVRGWLNRRQLAEHMSLNEDE-EPILSQTIGRAASHVTT 220

>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343} Length = 193

 Score =  107 bits (270), Expect = 4e-27
 Identities = 28/169 (16%), Positives = 47/169 (27%), Gaps = 18/169 (10%)

Query: 148 PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSP 207
            + L+ + +S L      L A      S+   R  PS+ N    + Y++ P         
Sbjct: 34  SKALSNTDLSDL------LWAANGINRSSEGKRTAPSAMNRQDIDIYVVLP--------Q 79

Query: 208 FVAHYAPKEHALELRAKIPSRFDLFNN--FFPKNSFLVGFSSIFWREAWKYGERAFRYCN 265
               Y  K H L L ++   R  +     F       +   S   +              
Sbjct: 80  GTYLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSNHVQLMGA 139

Query: 266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLD--IFPEFVIP 312
            D G     +++  +           M    LK  + L     P    P
Sbjct: 140 MDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKDTQMPMMNHP 188

>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343} Length = 193

 Score = 65.6 bits (160), Expect = 2e-12
 Identities = 16/116 (13%), Positives = 35/116 (30%), Gaps = 14/116 (12%)

Query: 521 PRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR----- 575
            +   L  ++ GD       ++  Q    +   SL +V+        K            
Sbjct: 86  AKGHKLNLISEGD---HRSAVAGGQAFVNNAPVSLVLVSDLS-----KLGDAKSNHVQLM 137

Query: 576 LFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGP 631
              + G++ Q + L   A  ++           +   L L  ++   + +  VG  
Sbjct: 138 GAMDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKDTQM-PMMNHPVGYF 192

>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1 Length = 200

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 3/96 (3%)

Query: 220 ELRAKIPSRFDLFNN-FFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMA 278
           E            N  +    S L+   S     + +  ++     + D G A  ++AM 
Sbjct: 65  EDWPLFVELLMEGNQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQ 124

Query: 279 AAELGWDVKILEGMGYKELKKLMGL--DIFPEFVIP 312
           A  LG+    + G+    + + + +      E  + 
Sbjct: 125 AHLLGYHAHGMGGIFKDRIVEKLDIPDGFKVEAGVA 160

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	650
3eo7_A	511	Putative nitroreductase; structural genomics, join	100.0
3hj9_A	223	Oxidoreductase; structural genomics, joint center	99.94
3hoi_A	193	FMN-dependent nitroreductase BF3017; YP_212631.1,	99.93
3hoi_A	193	FMN-dependent nitroreductase BF3017; YP_212631.1,	99.93
3hj9_A	223	Oxidoreductase; structural genomics, joint center	99.92
3eo7_A	511	Putative nitroreductase; structural genomics, join	99.92
3ge6_A	212	Nitroreductase; structural GENO joint center for s	99.85
3gbh_A	213	NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FM	99.85
4dn2_A	208	Nitroreductase; structural genomics, protein struc	99.84
3g14_A	193	Nitroreductase family protein; structural genom jo	99.84
3ge5_A	198	Putative NAD(P)H:FMN oxidoreductase; structural ge	99.84
3gag_A	206	Putative NADH dehydrogenase, NADPH nitroreductase;	99.84
3n2s_A	249	NADPH-dependent nitro/flavin reductase; alpga-beta	99.84
3eo8_A	219	BLUB-like flavoprotein; YP_001089088.1, structural	99.84
3e39_A	178	Putative nitroreductase; structural genomics, join	99.83
3m5k_A	172	Putative NADH dehydrogenase/NAD(P)H nitroreductas;	99.83
2fre_A	200	NAD(P)H-flavin oxidoreductase; FMN, structural gen	99.83
3of4_A	209	Nitroreductase; structural genomics, joint center	99.83
3kwk_A	175	Putative NADH dehydrogenase/NAD(P)H nitroreductas;	99.83
1bkj_A	240	NADPH-flavin oxidoreductase; luminescence, flavopr	99.83
3h4o_A	191	Nitroreductase family protein; structural genomics	99.83
3eof_A	248	Putative oxidoreductase; YP_213212.1, structural g	99.83
1f5v_A	240	Oxygen-insensitive NADPH nitroreductase; flavoprot	99.82
3pxv_A	189	Nitroreductase; flavoprotein, FMN-dependent, joint	99.82
1nox_A	205	NADH oxidase; flavoenzyme, flavoprotein FMN, oxido	99.82
1zch_A	255	Hypothetical oxidoreductase YCND; nitroreductase,	99.82
2b67_A	204	COG0778: nitroreductase; alpha-beta sandwich, FMN	99.82
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.82
3e10_A	168	Putative NADH oxidase; NP_348178.1, structural gen	99.82
1vfr_A	218	NAD(P)H\:FMN oxidoreductase; bioluminescence; HET:	99.82
3gfa_A	198	Putative nitroreductase; structural genomics, join	99.81
3qdl_A	210	Oxygen-insensitive NADPH nitroreductase; oxidoredu	99.8
3k6h_A	197	Nitroreductase family protein; APC5990, agrobacter	99.8
2hay_A	224	Putative NAD(P)H-flavin oxidoreductase; alpha-beta	99.8
2h0u_A	217	NADPH-flavin oxidoreductase; structur genomics, PS	99.8
3ek3_A	190	Nitroreductase; YP_211706.1, structural genom join	99.8
3bem_A	218	Putative NAD(P)H nitroreductase YDFN; 2632848, put	99.8
2isk_A	230	BLUB; oxidoreductase, flavin, monooxygenase, flavi	99.8
3gr3_A	230	Nitroreductase; structural genomics, joint center	99.8
3bm1_A	183	Protein YDJA, nitroreductase; oxidoreductase; HET:	99.79
1icr_A	217	Oxygen-insensitive NAD(P)H nitroreductase; alpha-b	99.79
2i7h_A	189	Nitroreductase-like family protein; alpha-beta, st	99.78
2r01_A	210	Nitroreductase family protein; structural genomics	99.78
3gb5_A	259	IYD-1, iodotyrosine dehalogenase 1; iodide salvage	99.78
2ifa_A	208	Hypothetical protein SMU.260; alpha-beta protein,	99.77
1ywq_A	200	Nitroreductase family protein; FMN, structu genomi	99.75
2wqf_A	202	Copper induced nitroreductase D; COPR regulated pr	99.75
2wzv_A	235	NFNB protein; nitroreductase, oxidoreductase; HET:	99.73
2ymv_A	330	ACG nitroreductase; oxidoreductase, dormancy, redu	99.71
2fre_A	200	NAD(P)H-flavin oxidoreductase; FMN, structural gen	99.63
3ge5_A	198	Putative NAD(P)H:FMN oxidoreductase; structural ge	99.6
3g14_A	193	Nitroreductase family protein; structural genom jo	99.6
3ge6_A	212	Nitroreductase; structural GENO joint center for s	99.58
4dn2_A	208	Nitroreductase; structural genomics, protein struc	99.58
3gfa_A	198	Putative nitroreductase; structural genomics, join	99.58
3e39_A	178	Putative nitroreductase; structural genomics, join	99.57
3gbh_A	213	NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FM	99.57
3h4o_A	191	Nitroreductase family protein; structural genomics	99.57
2isk_A	230	BLUB; oxidoreductase, flavin, monooxygenase, flavi	99.56
3eof_A	248	Putative oxidoreductase; YP_213212.1, structural g	99.56
2b67_A	204	COG0778: nitroreductase; alpha-beta sandwich, FMN	99.56
3n2s_A	249	NADPH-dependent nitro/flavin reductase; alpga-beta	99.55
3e10_A	168	Putative NADH oxidase; NP_348178.1, structural gen	99.55
3qdl_A	210	Oxygen-insensitive NADPH nitroreductase; oxidoredu	99.54
1zch_A	255	Hypothetical oxidoreductase YCND; nitroreductase,	99.54
3gag_A	206	Putative NADH dehydrogenase, NADPH nitroreductase;	99.53
1f5v_A	240	Oxygen-insensitive NADPH nitroreductase; flavoprot	99.52
1bkj_A	240	NADPH-flavin oxidoreductase; luminescence, flavopr	99.52
1nox_A	205	NADH oxidase; flavoenzyme, flavoprotein FMN, oxido	99.52
2h0u_A	217	NADPH-flavin oxidoreductase; structur genomics, PS	99.52
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.51
3bem_A	218	Putative NAD(P)H nitroreductase YDFN; 2632848, put	99.51
3eo8_A	219	BLUB-like flavoprotein; YP_001089088.1, structural	99.51
3kwk_A	175	Putative NADH dehydrogenase/NAD(P)H nitroreductas;	99.51
3m5k_A	172	Putative NADH dehydrogenase/NAD(P)H nitroreductas;	99.51
1vfr_A	218	NAD(P)H\:FMN oxidoreductase; bioluminescence; HET:	99.51
2r01_A	210	Nitroreductase family protein; structural genomics	99.49
3of4_A	209	Nitroreductase; structural genomics, joint center	99.49
2hay_A	224	Putative NAD(P)H-flavin oxidoreductase; alpha-beta	99.49
3pxv_A	189	Nitroreductase; flavoprotein, FMN-dependent, joint	99.48
3bm1_A	183	Protein YDJA, nitroreductase; oxidoreductase; HET:	99.44
3k6h_A	197	Nitroreductase family protein; APC5990, agrobacter	99.44
2i7h_A	189	Nitroreductase-like family protein; alpha-beta, st	99.42
1icr_A	217	Oxygen-insensitive NAD(P)H nitroreductase; alpha-b	99.42
3ek3_A	190	Nitroreductase; YP_211706.1, structural genom join	99.42
3gb5_A	259	IYD-1, iodotyrosine dehalogenase 1; iodide salvage	99.4
3gr3_A	230	Nitroreductase; structural genomics, joint center	99.39
2wqf_A	202	Copper induced nitroreductase D; COPR regulated pr	99.39
1vkw_A	218	Putative nitroreductase; structural genomics, join	99.39
2ifa_A	208	Hypothetical protein SMU.260; alpha-beta protein,	99.37
2wzv_A	235	NFNB protein; nitroreductase, oxidoreductase; HET:	99.33
1ywq_A	200	Nitroreductase family protein; FMN, structu genomi	99.29
1vkw_A	218	Putative nitroreductase; structural genomics, join	99.2
2ymv_A	330	ACG nitroreductase; oxidoreductase, dormancy, redu	97.31

>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}

Probab=100.00  E-value=2.7e-80  Score=695.24  Aligned_cols=491  Identities=22%  Similarity=0.324  Sum_probs=387.8

Q ss_pred             HHHHHHHHHhcCCcccccCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccCCC
Q 006333           67 SHVLKYHDQTKHSFTKYARGPHGLDWANQPNPFRRYISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTSLP  146 (650)
Q Consensus        67 ~~~~~yH~~tkh~~~~~~~~~~~lDw~~qP~pfk~y~~~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~  146 (650)
                      +.+.+||++|||++.+|+++++.|||++||.|||.|+++++++||.+....                       ...+.+
T Consensus         8 ~~~~~yh~~tk~~~~~~~~~~~~ldw~~qP~pfk~y~~~~~~~l~~~~~~~-----------------------~~~~~~   64 (511)
T 3eo7_A            8 SIAQHYHERTKYDPETIASKSQRLDWAKQPVPFKEYKIGSAIDLKPYLQET-----------------------PEVFVN   64 (511)
T ss_dssp             CHHHHHHHHTCCCTTTTTTC--CCCGGGCCCSSCCCSSSEEEECGGGSSCC-----------------------C-----
T ss_pred             HHHHHHHHHccCChhhcCCCCCCCCcccCCCccccCCCCCccCCCCcchhc-----------------------ccccCC
Confidence            478899999999999999999999999999999999999999998654310                       012245


Q ss_pred             CCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCC
Q 006333          147 PPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIP  226 (650)
Q Consensus       147 ~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~  226 (650)
                      .++++++++|++|||+++|+++++..++..|.+|++|||||+||+|+||++++|+||+.  |+|||+|.+|+|+++...+
T Consensus        65 ~~~~l~l~~Ls~lL~~~~gi~~~~~~~~~~~~~R~aPSagnl~P~e~yvv~~~v~~l~~--GiY~Y~p~~h~L~~v~~~~  142 (511)
T 3eo7_A           65 DTNGQWWQRLSRLLFRSYGLTARMPSMGNTVYLRAAPSAGGLYPAEVYVVSRGTPLLSP--GLYNYQCRTHSLIHYWESD  142 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHCEEEEEEETTEEEEEESSCCGGGCCCEEEEEEECCCSSSCS--EEEEEETTTTEEEEEECSC
T ss_pred             CCCCCCHHHHHHHHHHhhCCceeccCCCCcceeccccCCcccCceEEEEEECCCCCCCC--EEEEEECCCCEEEEEeccc
Confidence            67889999999999999999999887777888999999999999999999999999995  9999999999999987655


Q ss_pred             chhc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh
Q 006333          227 SRFD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM  301 (650)
Q Consensus       227 ~~~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL  301 (650)
                      ....    +. +.++.+|+++|+++++++|+.|||++++||++++|+||++||++|+|+++||++|++++|+++.|+++|
T Consensus       143 ~~~~L~~a~~~q~~~~~Ap~~iv~~a~~~r~~~ky~~~~~~~~~~D~G~a~qnl~LaA~~lGlg~~~ig~f~~~~v~~~L  222 (511)
T 3eo7_A          143 VWQSLQEACFWHPALESTQLAIIVTAVFYRSAWRYEDRAYRRICLDTGHLLGNIELSAAITDYRPHLIGGFIDEAVNDLL  222 (511)
T ss_dssp             CHHHHHHHTTTCHHHHHCSEEEEEEEEHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCSCHHHHHHHH
T ss_pred             HHHHHHHHhcCCccccCCCEEEEEEEEehHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHcCCCEEEECeeCHHHHHHHh
Confidence            4321    22 346779999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCcceeeeccccCCCCccccCCCcceeEeecCCCCCCCcchhHHHHHHHHhhhccccCCCCCCCccc---ccchhh
Q 006333          302 GLDIFPEFVIPSKPIKGKIPEIEFEHPDCVLVVFPSGATGFDVNYEKLRLLMEEFSALDWKGKPNLLSKEH---FCWDII  378 (650)
Q Consensus       302 gLd~~~E~v~~~~~i~~~~~~~e~e~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~w~g~~n~ls~~~---~~w~~i  378 (650)
                      |||++.|.++++++|+ ..++.+.+.|++ ....|+..   .++|+.+.    ......|.+++|.+++++   ..|+.+
T Consensus       223 ~L~~~~~~~~~~~~lG-~~~~~~~~~~~~-~~~~ps~~---~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (511)
T 3eo7_A          223 YIDPLQEGAIAVLPLA-DLLDIQQNISPG-CTALPSAT---ETNYPQVP----DGELLKYFHHHTQISASITGKLNLPTV  293 (511)
T ss_dssp             TCCTTTEEEEEEEEEE-ETTSGGGCCCCC-CCCCCCCC---CCCCCCCC----TTTHHHHHHHTSCCCCCSCC-------
T ss_pred             CcCCccceeEEEEEec-CCcccccCCCcc-cccCCCcc---cccccccc----cchhhhhcccchhcccccccccccccc
Confidence            9998889999999994 444434344442 23334322   34454432    223445888899999877   457766


Q ss_pred             hhHHHHhcCCcccCCCCccCCCCCCCc--CCCC--CCCCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc-cCCCc
Q 006333          379 YSTAEVVKKPLTIRNAFSVDPFSSSGV--CSES--SYKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL-PSGSR  453 (650)
Q Consensus       379 ~~~~~a~~~p~~~~~~~~~~p~~~~~~--~~~~--~~~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~-Ps~~~  453 (650)
                      ......       +++. ..|++....  ++..  ....+++.++|++|||+|+|++ ++|+.++|.+||++++ |+.++
T Consensus       294 ~~~~~~-------~~~~-~~p~~~~~~~~~~~~~~~~~~~~l~~~i~~RRSvR~F~~-~~I~~e~L~~lL~aa~~~~~~~  364 (511)
T 3eo7_A          294 IQEKSL-------EDKY-NFPFCLKISTVSAPIYWGENLSDLEITMHKRRSTRAYNG-EELTFDELKALLDFTYQPQNYI  364 (511)
T ss_dssp             -----C-------CCSC-CCTTSCEEECCCCCCCCCGGGHHHHHHHHHCCCCSCBCC-CCEEHHHHHHHHHHHHCGGGGG
T ss_pred             cccccc-------cccc-ccccccccccCCCCCCCCcCcccHHHHHHhCCCccccCC-CCCCHHHHHHHHHHhcCCcccc
Confidence            543211       1111 112211100  1111  1246789999999999999998 7999999999999997 44321


Q ss_pred             chhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc
Q 006333          454 SREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD  533 (650)
Q Consensus       454 ~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd  533 (650)
                         .++. ...|+...  ...+++||+|++|+||++|+|+|++..+                         .|..+..++
T Consensus       365 ---~~~~-r~aPSagn--~qp~~~yvvv~~v~gL~~G~Y~y~~~~h-------------------------~L~~i~~~~  413 (511)
T 3eo7_A          365 ---DQSL-DNSPDYFD--LNLIETFIAVCGVQGLEAGCYYYAPKAQ-------------------------ELRQIRFKN  413 (511)
T ss_dssp             ---GGTC-CSSCCCSC--GGGCEEEEEESSEETSCSEEEEEETTTT-------------------------EEEEEEESC
T ss_pred             ---ccCC-ccCCCCCC--cCcEEEEEEEeccCCCCCeeEEEcCCCC-------------------------EEEEecCcc
Confidence               1111 12333211  2357789999999999999999998754                         466788899


Q ss_pred             HHHHHhhhcccccccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh
Q 006333          534 CQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL  613 (650)
Q Consensus       534 ~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L  613 (650)
                      +++.+..++++|.++.+|+++|++++++++...+||.++|+.+++|+|+++|+|+|+|+++|||+||||+|++++|+++|
T Consensus       414 ~~~~l~~~~~~q~~~~~Ap~~iv~~ad~~~~~~~yg~~~~~~~~~dag~a~q~l~LaA~~lGlgs~~ig~~~~~~v~~~L  493 (511)
T 3eo7_A          414 FRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLNLGVSGIGGFFDDQVNEVL  493 (511)
T ss_dssp             CHHHHHHHTTTCHHHHHCSEEEEEEECHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHH
T ss_pred             HHHHHHHHHcCCccccCCCEEEEEEEECchhhhhhchhhHHHHHHHHHHHHHHHHHHHHHCCCCeEEEcccCHHHHHHHh
Confidence            99989999999999999999999999999988899999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCceEEEEEEccccC
Q 006333          614 GLTGSKFQSLYHFTVGGPV  632 (650)
Q Consensus       614 gL~~~~~~~ly~~avG~p~  632 (650)
                      ||++ ++.++++++||+|.
T Consensus       494 ~lp~-~~~~~~~i~iGyp~  511 (511)
T 3eo7_A          494 GIPN-DEAVIYITTLGRPR  511 (511)
T ss_dssp             TCCT-TCEEEEEEEEECBC
T ss_pred             CcCC-CceEEEEEEeeccC
Confidence            9996 67999999999984

>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}

Probab=99.94  E-value=1.3e-26  Score=232.85  Aligned_cols=183  Identities=19%  Similarity=0.204  Sum_probs=152.4

Q ss_pred             CCCCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccc
Q 006333          103 ISAPLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWS  178 (650)
Q Consensus       103 ~~~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~  178 (650)
                      ...+.|+||.+...                ....+.+.+.+|    .+.+++|+.++|++||++++|++...      ..
T Consensus        24 ~~~~~i~Lp~p~~~----------------~~~~~~~~i~~RrS~R~f~~~~v~~e~L~~lL~~~~g~~~~~------~a   81 (223)
T 3hj9_A           24 TSERVITLPEPDRT----------------SGMPLMGTLWLRKSTREFDQQPLPLKQLSELLWAAAGVNRSL------GG   81 (223)
T ss_dssp             CCCSEEECCCCCCS----------------CSSBHHHHHHHCCCCCCBCCCCCCHHHHHHHHHHHHCEEETG------GG
T ss_pred             CCCCeeECCCCCCC----------------CCcCHHHHHHhcCCccccCCCCCCHHHHHHHHHHhhCCCccc------cC
Confidence            35578999987642                234566666554    46789999999999999999998632      23


Q ss_pred             ccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCCchhc-cccccCCCCcEEEEEeeechhHHHhhh
Q 006333          179 LRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFD-LFNNFFPKNSFLVGFSSIFWREAWKYG  257 (650)
Q Consensus       179 ~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~~~~~-~~~~~~~~a~~~iv~ta~~~r~~~KYg  257 (650)
                      .|.+||+||+|||++||+..        +|+|||++..|.|..+...+.... ..+.++.+|+++|+++++.++..|||+
T Consensus        82 ar~aPSa~n~qp~~~~vv~~--------~~~y~y~~~~~~L~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~y~  153 (223)
T 3hj9_A           82 GRTAPSPYGETVIDVYVALP--------AGLYRYDPVHHCLELKRAADLRSMTGYQDFVGMAPLDLVFVANHGRMQEMPP  153 (223)
T ss_dssp             EESSCCGGGCCCEEEEEEET--------TEEEEEETTTTEEEEEESEECTTCSSEECCCCCCSEEEEEEEEGGGCTTSCG
T ss_pred             ceecCCCCCccceEEEEEeC--------CeEEEEcCCCCEEEEccccCHHHHhcCCchhccCCEEEEEEEEhhHHHHHHH
Confidence            69999999999999999843        399999999999976543221111 124567899999999999999999999


Q ss_pred             chhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          258 ERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       258 ~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +++|+++++|+|+++||++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus       154 ~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~v~~~L~l~~-~~~~~~~i~i  211 (223)
T 3hj9_A          154 KLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNE-DEEPILSQTI  211 (223)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeeeCHHHHHHHcCCCC-CceEEEEEEc
Confidence            999999999999999999999999999999999999999999999997 4678888888

>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}

Probab=99.93  E-value=3.2e-26  Score=224.03  Aligned_cols=181  Identities=15%  Similarity=0.119  Sum_probs=151.3

Q ss_pred             CCcccCCCCCCCCCCCCCCCCcccCCCCCCcchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccccc
Q 006333          105 APLLPLMHLPNRTDHRTQTPSSLSNYNHDNAPLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR  180 (650)
Q Consensus       105 ~~~i~Lp~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R  180 (650)
                      ...|.||.+...                ....+.+.+..|    .+.+++|+.++|.+||+.++|++...      ...|
T Consensus         3 ~~~i~Lp~p~~~----------------~~~~~~~~i~~RrS~R~f~~~~v~~e~l~~il~~a~g~~~~~------~~~~   60 (193)
T 3hoi_A            3 ERTIQLPKPDMN----------------RAGLLMKALSERHSTREYASKALSNTDLSDLLWAANGINRSS------EGKR   60 (193)
T ss_dssp             CSEEECCCCCTT----------------CSCCHHHHHHHCCCCCCCCSSCCCHHHHHHHHHHHHCEEETT------TTEE
T ss_pred             CceeeCCCCCCC----------------CCCCHHHHHhhcCCccccCCCCCCHHHHHHHHHHhcCCCccc------CCcc
Confidence            367899987642                234566666554    46789999999999999999998642      1259


Q ss_pred             ccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhccCCchhc--cccccCCCCcEEEEEeeechhHHHhhhc
Q 006333          181 VNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAKIPSRFD--LFNNFFPKNSFLVGFSSIFWREAWKYGE  258 (650)
Q Consensus       181 ~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~~~~~~~--~~~~~~~~a~~~iv~ta~~~r~~~KYg~  258 (650)
                      .+||+||+|||++||+..        +|+|||+|..|.|..+...+....  ..+.++.+||++|+++++.++..+||++
T Consensus        61 ~aPS~~n~qp~~~~vv~~--------~~~y~y~~~~~~l~~~~~~~~~~~~~~~~~~~~~ap~~iv~~~~~~~~~~~~~~  132 (193)
T 3hoi_A           61 TAPSAMNRQDIDIYVVLP--------QGTYLYDAKGHKLNLISEGDHRSAVAGGQAFVNNAPVSLVLVSDLSKLGDAKSN  132 (193)
T ss_dssp             SSCCGGGCCCEEEEEEET--------TEEEEEETTTTEEEEEEESCCHHHHHTTCGGGGGSSEEEEEEEEGGGTSCTTCH
T ss_pred             cCCCCCCcCceEEEEEcC--------CEeEEEccccCEEEEccCcchHHHHhcCchhHhCCCEEEEEEEEhHHhhhhhhH
Confidence            999999999999999854        399999999999988765433211  1235678999999999999999999999


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          259 RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       259 rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++|+++++|+|+++||++|+|+++|||+|++++|+++.++++|||+.. +.++++++|
T Consensus       133 ~~~~~~~~d~g~a~qnl~LaA~~lGlg~~~~~~~~~~~v~~~l~l~~~-~~~~~~i~i  189 (193)
T 3hoi_A          133 HVQLMGAMDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKDT-QMPMMNHPV  189 (193)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTEEECCBCCCCHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecHHHHHHHcCCCCC-ceEEEEEEc
Confidence            999999999999999999999999999999999999999999999975 567777777

>3hoi_A FMN-dependent nitroreductase BF3017; YP_212631.1, structural genomics, joint center for S genomics, JCSG; HET: MSE FMN FLC; 1.55A {Bacteroides fragilis nctc 9343}

Probab=99.93  E-value=1.1e-25  Score=220.16  Aligned_cols=167  Identities=15%  Similarity=0.174  Sum_probs=142.6

Q ss_pred             CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh----------c--cCCCcchhhhhcccCCCcccccccceEEEEE
Q 006333          412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC----------L--PSGSRSREKQKRQLALPYRVLSWDAEVHAAL  479 (650)
Q Consensus       412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a----------~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v  479 (650)
                      ..+++.++|++|||+|+|++ ++|+.++|.+||+++          .  ||+.         +.|||++          +
T Consensus        15 ~~~~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~~a~g~~~~~~~~~~aPS~~---------n~qp~~~----------~   74 (193)
T 3hoi_A           15 RAGLLMKALSERHSTREYAS-KALSNTDLSDLLWAANGINRSSEGKRTAPSAM---------NRQDIDI----------Y   74 (193)
T ss_dssp             CSCCHHHHHHHCCCCCCCCS-SCCCHHHHHHHHHHHHCEEETTTTEESSCCGG---------GCCCEEE----------E
T ss_pred             CCCCHHHHHhhcCCccccCC-CCCCHHHHHHHHHHhcCCCcccCCcccCCCCC---------CcCceEE----------E
Confidence            35899999999999999997 899999999999998          6  7754         5689883          3


Q ss_pred             EEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEee
Q 006333          480 FIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVA  559 (650)
Q Consensus       480 ~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a  559 (650)
                      +|     ..+|+|+|++..+.                         |..+..++++..   ++.+|.++.+|+++|++++
T Consensus        75 vv-----~~~~~y~y~~~~~~-------------------------l~~~~~~~~~~~---~~~~~~~~~~ap~~iv~~~  121 (193)
T 3hoi_A           75 VV-----LPQGTYLYDAKGHK-------------------------LNLISEGDHRSA---VAGGQAFVNNAPVSLVLVS  121 (193)
T ss_dssp             EE-----ETTEEEEEETTTTE-------------------------EEEEEESCCHHH---HHTTCGGGGGSSEEEEEEE
T ss_pred             EE-----cCCEeEEEccccCE-------------------------EEEccCcchHHH---HhcCchhHhCCCEEEEEEE
Confidence            33     36899999976543                         223445555432   2457889999999999999


Q ss_pred             ecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333          560 HFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPV  632 (650)
Q Consensus       560 ~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~  632 (650)
                      +.++...+||+++|++.++|+|+++|||+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.
T Consensus       122 ~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGlg~~~~~~~~~~~v~~~l~l~~-~~~~~~~i~iGyp~  193 (193)
T 3hoi_A          122 DLSKLGDAKSNHVQLMGAMDAGIVSQNISLFCSAARLATVPRASMDLVRLKAALKLKD-TQMPMMNHPVGYFK  193 (193)
T ss_dssp             EGGGTSCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTEEECCBCCCCHHHHHHHHTCCT-TEEEEEEEEEEECC
T ss_pred             EhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEeeecHHHHHHHcCCCC-CceEEEEEEccCCC
Confidence            9998888899999999999999999999999999999999999999999999999998 67899999999984

>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}

Probab=99.92  E-value=5.1e-25  Score=221.29  Aligned_cols=170  Identities=18%  Similarity=0.174  Sum_probs=141.3

Q ss_pred             CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHH----------Hhc--cCCCcchhhhhcccCCCcccccccceEEEEE
Q 006333          412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIML----------HCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAAL  479 (650)
Q Consensus       412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~----------~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v  479 (650)
                      ..+++.++|++|||+|+|++ ++|+.++|.+||+          ++.  ||+.         +.|||++          +
T Consensus        38 ~~~~~~~~i~~RrS~R~f~~-~~v~~e~L~~lL~~~~g~~~~~~aar~aPSa~---------n~qp~~~----------~   97 (223)
T 3hj9_A           38 SGMPLMGTLWLRKSTREFDQ-QPLPLKQLSELLWAAAGVNRSLGGGRTAPSPY---------GETVIDV----------Y   97 (223)
T ss_dssp             CSSBHHHHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHCEEETGGGEESSCCGG---------GCCCEEE----------E
T ss_pred             CCcCHHHHHHhcCCccccCC-CCCCHHHHHHHHHHhhCCCccccCceecCCCC---------CccceEE----------E
Confidence            46899999999999999997 8999999999996          554  7754         5689883          3


Q ss_pred             EEecccCCCCeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEee
Q 006333          480 FIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVA  559 (650)
Q Consensus       480 ~v~rVeGL~~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a  559 (650)
                      +|     +.+|+|+|++..+.+                         ..+..++++    ..+.+|.++.+|+++|++++
T Consensus        98 vv-----~~~~~y~y~~~~~~L-------------------------~~~~~~~~~----~~~~~~~~~~~Ap~~ivv~~  143 (223)
T 3hj9_A           98 VA-----LPAGLYRYDPVHHCL-------------------------ELKRAADLR----SMTGYQDFVGMAPLDLVFVA  143 (223)
T ss_dssp             EE-----ETTEEEEEETTTTEE-------------------------EEEESEECT----TCSSEECCCCCCSEEEEEEE
T ss_pred             EE-----eCCeEEEEcCCCCEE-------------------------EEccccCHH----HHhcCCchhccCCEEEEEEE
Confidence            33     568999998765432                         122233332    22357888999999999999


Q ss_pred             ecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          560 HFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       560 ~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                      +.++...+|+.++|++.++|+|+++|||+|+|+++|||+||||+|++++|+++|||++ ++.+++.++||+|.++..
T Consensus       144 ~~~~~~~~y~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~v~~~L~l~~-~~~~~~~i~iGyp~~~~~  219 (223)
T 3hj9_A          144 NHGRMQEMPPKLRETFSAAAAGAMAENAYLYCASAGLGAVVRGWLNRRQLAEHMSLNE-DEEPILSQTIGRAASHVT  219 (223)
T ss_dssp             EGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCCHHHHHHHTTCCT-TEEEEEEEEEECBCCC--
T ss_pred             EhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeeeCHHHHHHHcCCCC-CceEEEEEEccCCCCCCC
Confidence            9998888899999999999999999999999999999999999999999999999997 679999999999988763

>3eo7_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.80A {Anabaena variabilis atcc 29413}

Probab=99.92  E-value=3.4e-25  Score=248.35  Aligned_cols=174  Identities=20%  Similarity=0.226  Sum_probs=149.8

Q ss_pred             cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333          135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA  210 (650)
Q Consensus       135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY  210 (650)
                      ..+.+.+.+|    .+.+++|+.++|++||+.+.+.+....     ..+|.+||+||+|||++||++++++||+.  |+|
T Consensus       325 ~~l~~~i~~RRSvR~F~~~~I~~e~L~~lL~aa~~~~~~~~-----~~~r~aPSagn~qp~~~yvvv~~v~gL~~--G~Y  397 (511)
T 3eo7_A          325 SDLEITMHKRRSTRAYNGEELTFDELKALLDFTYQPQNYID-----QSLDNSPDYFDLNLIETFIAVCGVQGLEA--GCY  397 (511)
T ss_dssp             HHHHHHHHHCCCCSCBCCCCEEHHHHHHHHHHHHCGGGGGG-----GTCCSSCCCSCGGGCEEEEEESSEETSCS--EEE
T ss_pred             ccHHHHHHhCCCccccCCCCCCHHHHHHHHHHhcCCccccc-----cCCccCCCCCCcCcEEEEEEEeccCCCCC--eeE
Confidence            4566666654    467889999999999999988654321     23699999999999999999999999995  999


Q ss_pred             EecCCCCchhhhccCCchhc----cc-cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCc
Q 006333          211 HYAPKEHALELRAKIPSRFD----LF-NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWD  285 (650)
Q Consensus       211 hY~p~~h~L~~l~~~~~~~~----~~-~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~  285 (650)
                      ||+|.+|+|..+...+....    +. +.++.+|+++|++++++.+..||||+++||++++|+|+++|||+|+|+++|||
T Consensus       398 ~y~~~~h~L~~i~~~~~~~~l~~~~~~q~~~~~Ap~~iv~~ad~~~~~~~yg~~~~~~~~~dag~a~q~l~LaA~~lGlg  477 (511)
T 3eo7_A          398 YYAPKAQELRQIRFKNFRRELHFLCLGQELGRDAAAVIFHTSDLKSAIAQYGDRVYRYLHMDAGHLGQRLNLAAIQLNLG  477 (511)
T ss_dssp             EEETTTTEEEEEEESCCHHHHHHHTTTCHHHHHCSEEEEEEECHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             EEcCCCCEEEEecCccHHHHHHHHHcCCccccCCCEEEEEEEECchhhhhhchhhHHHHHHHHHHHHHHHHHHHHHCCCC
Confidence            99999999998876553321    12 34667899999999999999999999999999999999999999999999999


Q ss_pred             eEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          286 VKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       286 ~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +|++++|+++.++++|||+. .+.++++++|
T Consensus       478 s~~ig~~~~~~v~~~L~lp~-~~~~~~~i~i  507 (511)
T 3eo7_A          478 VSGIGGFFDDQVNEVLGIPN-DEAVIYITTL  507 (511)
T ss_dssp             EEEECCCCHHHHHHHHTCCT-TCEEEEEEEE
T ss_pred             eEEEcccCHHHHHHHhCcCC-CceEEEEEEe
Confidence            99999999999999999985 5678888887

>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0

Probab=99.85  E-value=4.5e-21  Score=190.26  Aligned_cols=156  Identities=21%  Similarity=0.324  Sum_probs=120.3

Q ss_pred             CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      ..+++.++|++|||+|+|++..+|+.++|.+||+++.  ||++         |.|||++          ++|.       
T Consensus         6 ~~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~ileaa~~APS~~---------N~Qpw~f----------~vv~-------   59 (212)
T 3ge6_A            6 TATDFMEIVKGRRSIRNYDTNVKISKEEMTQILEEATLAPSSV---------NMQPWRF----------LVID-------   59 (212)
T ss_dssp             CCCBHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC-------
T ss_pred             cHHHHHHHHHhhHhHHhcCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCEEE----------EEEe-------
Confidence            4578999999999999998635999999999999997  8875         5799993          4443       


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhc-ccccccccCceEEEEeeecchhhh--
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLS-CHQDIAGDGCFSLGMVAHFEPTLS--  566 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~-~~Q~~~~~aa~~l~~~a~~~~~~~--  566 (650)
                             +.+.+++|.                                  .++ .+|.+..+|+++|+++++.+....  
T Consensus        60 -------~~~~~~~l~----------------------------------~~~~~~~~~~~~a~~~iv~~~d~~~~~~~~   98 (212)
T 3ge6_A           60 -------SEEGKATLA----------------------------------PLAKFNQVQVETSSAVIAVFGDMKAIDQLE   98 (212)
T ss_dssp             -------SHHHHHHHG----------------------------------GGSTTCHHHHHHSSEEEEEEEETTGGGGHH
T ss_pred             -------CHHHHHHHH----------------------------------hhcccCcccccCCCEEEEEEeCCchhhhHH
Confidence                   222222221                                  122 356777889999999998764310  


Q ss_pred             -cccc-----------------------------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC-
Q 006333          567 -NKNV-----------------------------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL-  615 (650)
Q Consensus       567 -~yg~-----------------------------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL-  615 (650)
                       .|+.                             ......+.|+|+++|+|+|+|+++|||+||||+|+.++|+++||| 
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~~~~~~~v~~~L~l~  178 (212)
T 3ge6_A           99 NIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPASALKDSILIDSGLVSMQLMLVARAHGYDTNPIGGYEKDQIAEAFGME  178 (212)
T ss_dssp             HHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCC
Confidence             0000                             001246799999999999999999999999999999999999999 


Q ss_pred             CCCCceEEEEEEccccCCcC
Q 006333          616 TGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       616 ~~~~~~~ly~~avG~p~~d~  635 (650)
                      ++ ++.+++.++||||.++.
T Consensus       179 p~-~~~~~~~ialGy~~~~~  197 (212)
T 3ge6_A          179 KD-RYVPVMLLSIGKAVDAG  197 (212)
T ss_dssp             SS-SEEEEEEEEEECBSSCC
T ss_pred             CC-CceEEEEEEEeCCCCCC
Confidence            65 68999999999998874

>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0

Probab=99.85  E-value=6.9e-21  Score=189.19  Aligned_cols=156  Identities=17%  Similarity=0.242  Sum_probs=119.8

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++..+|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         8 ~~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~--------   60 (213)
T 3gbh_A            8 INDFNEVLNSRKSVKVFDENYKIPREEMDEIITKATKAPSSV---------NMQPWRI----------AVVQ--------   60 (213)
T ss_dssp             CCBHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred             HHHHHHHHHhhhhHhhcCCCCCCCHHHHHHHHHHHHhCCCcC---------CCCCcEE----------EEEe--------
Confidence            468999999999999999735999999999999997  8875         5799983          4443        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhc-ccccccccCceEEEEeeecchhhhc--
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLS-CHQDIAGDGCFSLGMVAHFEPTLSN--  567 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~-~~Q~~~~~aa~~l~~~a~~~~~~~~--  567 (650)
                            +.+.+++|.                                  .++ .+|.++.+|+++|+++++.+.....  
T Consensus        61 ------~~e~~~~L~----------------------------------~~~~~~~~~~~~ap~~iv~~~d~~~~~~~~~  100 (213)
T 3gbh_A           61 ------SDEMKEKVK----------------------------------ESFGFNSRQLTTSSAMLIIFGDLQNYEKAEQ  100 (213)
T ss_dssp             ------SHHHHHHHT----------------------------------GGGGGGHHHHHHSSEEEEEEEETTGGGGHHH
T ss_pred             ------CHHHHHHHH----------------------------------HhhccCchhhccCCeeEEEEecCchhhhHHH
Confidence                  222222221                                  112 3566777899999999987642110  


Q ss_pred             -c------c-------------------c----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCC
Q 006333          568 -K------N-------------------V----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTG  617 (650)
Q Consensus       568 -y------g-------------------~----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~  617 (650)
                       |      |                   .    ......++|+|+++|+|+|+|+++|||+||||+|+.++|+++|||+.
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~i~~~~~~~v~~~L~lp~  180 (213)
T 3gbh_A          101 IYGDAVEQQLMTEDIKAQLLDWILPYYKNLSREGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDS  180 (213)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCTTTHHHHHTCCT
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecCcCHHHHHHHhCCCc
Confidence             0      0                   0    01124578999999999999999999999999999999999999993


Q ss_pred             CCceEEEEEEccccCCcC
Q 006333          618 SKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       618 ~~~~~ly~~avG~p~~d~  635 (650)
                      +++.+++.++||||.++.
T Consensus       181 ~~~~~~~~i~lGy~~~~~  198 (213)
T 3gbh_A          181 DRYVPVLAIAIGKKAQDA  198 (213)
T ss_dssp             TTEEEEEEEEEECBSSCC
T ss_pred             cCceEEEEEEecccCCCC
Confidence            378999999999998874

>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*

Probab=99.84  E-value=1.4e-20  Score=186.82  Aligned_cols=167  Identities=16%  Similarity=0.236  Sum_probs=124.3

Q ss_pred             CCCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCC
Q 006333          411 YKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLP  488 (650)
Q Consensus       411 ~~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~  488 (650)
                      ...|++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.      
T Consensus        20 ~~~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~------   73 (208)
T 4dn2_A           20 FQSMETLEAIRTRRSVRKFSD-RPVEPEKLRAVLDAARLAPSWA---------NMQCWRF----------VVVE------   73 (208)
T ss_dssp             TTCCBHHHHHHHCCBCCCBCC-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC------
T ss_pred             cCcchHHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCEEE----------EEEE------
Confidence            456899999999999999997 8999999999999997  8865         5799983          3433      


Q ss_pred             CeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc
Q 006333          489 KGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK  568 (650)
Q Consensus       489 ~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y  568 (650)
                              +++.++.|.+..    .|+...         .. .+.      ....+|.++.+|+++|+++++.+.....+
T Consensus        74 --------~~~~~~~l~~~~----~~~~~~---------~~-~~~------~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~  125 (208)
T 4dn2_A           74 --------DQATKVQISELS----YVEAYF---------GP-KGY------KSNPAQKALAEAPVVIIACGEPPQSGELR  125 (208)
T ss_dssp             --------CHHHHHHHHHTC----CCCTTC---------CC-TTC------SSCTTHHHHHHSSEEEEEEECGGGSCEET
T ss_pred             --------CHHHHHHHHHhh----hhhhhh---------hh-ccc------cccchhhhhcCCCEEEEEEEecccccccc
Confidence                    233334444310    000000         00 000      01124567788999999999876542222


Q ss_pred             ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      +   .++...|+|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||+|.++.
T Consensus       126 ~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~L~lp~-~~~~~~~i~lGyp~~~~  188 (208)
T 4dn2_A          126 G---QQYYLTDVGIAAQNLMLAAHDLGLGSVFVGVFDEQQLGELLGIPA-ELRIVGLFPLGYPLEGP  188 (208)
T ss_dssp             T---EETHHHHHHHHHHHHHHHHHHTTCEECCBCCCCHHHHHHHHTCCT-TCEEEEEEEEECBSSCC
T ss_pred             c---ccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeCcCCCC
Confidence            2   245789999999999999999999999999999999999999997 67999999999998765

>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}

Probab=99.84  E-value=4.8e-21  Score=187.91  Aligned_cols=151  Identities=20%  Similarity=0.306  Sum_probs=120.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         2 M~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPS~~---------n~qpw~~----------~vv~---------   52 (193)
T 3g14_A            2 MEFYEVIKKRKSIKKFEQ-TAIDRDKLLKIIDMAMRAPSWK---------NKTPYKF----------IVVE---------   52 (193)
T ss_dssp             CBHHHHHHHCCBCCCBCC-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             CcHHHHHHhCcchhcCCC-CCCCHHHHHHHHHHHHHCcCcc---------CCCCeEE----------EEEe---------
Confidence            689999999999999998 7999999999999997  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                           +.+.++.|.+.+.                    ...         ..+|.++.+|+++|+++++.+.....+|  
T Consensus        53 -----~~~~~~~l~~~~~--------------------~~~---------~~~~~~~~~Ap~~ivv~~~~~~~~~~~~--   96 (193)
T 3g14_A           53 -----SDKLKLDIANAIE--------------------NKT---------SAASEAVLNSPMTIVAVANPEESGDVSG--   96 (193)
T ss_dssp             -----CHHHHHHHHHHBC--------------------CSS---------SHHHHHHHHSSEEEEEEECHHHHCEETT--
T ss_pred             -----CHHHHHHHHHHHh--------------------hcc---------ccchhhhcCCCEEEEEEEeCcccccccc--
Confidence                 2333344443210                    000         1145677889999999998765443333  


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEcccc
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGP  631 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p  631 (650)
                       .++.+.++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|
T Consensus        97 -~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~l~lp~-~~~~~~~i~lGyp  154 (193)
T 3g14_A           97 -KEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKIPD-NLRVVALTPLGVP  154 (193)
T ss_dssp             -EEHHHHHHHHHHHHHHHHHHHTTCBBCCBCCBCHHHHHHHHTCCT-TSEEEEEEEEBCB
T ss_pred             -ccchHhhHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeCC
Confidence             256789999999999999999999999999999999999999997 6799999999999

>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}

Probab=99.84  E-value=9.7e-21  Score=186.79  Aligned_cols=150  Identities=15%  Similarity=0.182  Sum_probs=120.8

Q ss_pred             CcH---HHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCC
Q 006333          414 FTV---REVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLP  488 (650)
Q Consensus       414 ~~l---~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~  488 (650)
                      |++   .++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.      
T Consensus        25 M~~~~l~~~i~~RrSvR~f~~-~~V~~e~l~~il~aa~~APS~~---------n~Qpwrf----------~vv~------   78 (198)
T 3ge5_A           25 QDFRLIEDFFRTRRSVRKFID-RPVEEEKLMAILEAGRIAPSAH---------NYQPWHF----------LVVR------   78 (198)
T ss_dssp             TTCCHHHHTTTTCCCCCCBCS-CCCCHHHHHHHHHHHHHCCCGG---------GCCCEEE----------EEEC------
T ss_pred             ccHHHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHHCCCcC---------CCCCEEE----------EEEE------
Confidence            667   999999999999997 8999999999999997  8865         5799983          4443      


Q ss_pred             CeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc
Q 006333          489 KGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK  568 (650)
Q Consensus       489 ~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y  568 (650)
                              +.+.++.|.+                                   +++|.++.+|+++|+++++.+..... 
T Consensus        79 --------~~e~~~~l~~-----------------------------------~~~~~~~~~Ap~~ivv~~~~~~~~~~-  114 (198)
T 3ge5_A           79 --------EEEGRKRLAP-----------------------------------CSQQPWFPGAPIYIITLGDHQRAWKR-  114 (198)
T ss_dssp             --------SHHHHHHHGG-----------------------------------GCCCTTGGGCSEEEEEEEETTTSCEE-
T ss_pred             --------CHHHHHHHHH-----------------------------------HhCcccccCCCEEEEEEEeccccccc-
Confidence                    2222222111                                   12577888999999999987643211 


Q ss_pred             ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                        .+++....|+|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||||.++..
T Consensus       115 --~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~iGyp~~~~~  179 (198)
T 3ge5_A          115 --GAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDIPS-HMTPVSILALGYGDPTVP  179 (198)
T ss_dssp             --TTEESHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCT-TEEEEEEEEEECBCTTSC
T ss_pred             --ccccchHHHHHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhCcCC-CceEEEEEEEeCcCCCCC
Confidence              34566789999999999999999999999999999999999999998 679999999999987753

>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0

Probab=99.84  E-value=8.7e-21  Score=187.35  Aligned_cols=154  Identities=15%  Similarity=0.179  Sum_probs=119.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++.++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         4 ~~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~---------   55 (206)
T 3gag_A            4 NDYLNFLDGRVSVRRFDPDAVLPNDLIKDMLEHASYAPSGN---------NFQPWRV----------VVVK---------   55 (206)
T ss_dssp             HHHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred             HHHHHHHHHhhhhhccCCCCCCCHHHHHHHHHHHHHCCCCC---------CCCCeEE----------EEEc---------
Confidence            36889999999999998536999999999999997  8875         5799993          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hc-c-
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SN-K-  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~-y-  568 (650)
                           +.+.+++|.                                  .++.+|.+..+|+++|+++++.+... .+ | 
T Consensus        56 -----~~~~~~~l~----------------------------------~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~   96 (206)
T 3gag_A           56 -----NKNKQEDLK----------------------------------KLAALQPQVATASAVFLLFGDENAYDLTWWQE   96 (206)
T ss_dssp             -----CHHHHHHHH----------------------------------HTTTTCTHHHHSSEEEEEEEEGGGCCHHHHHH
T ss_pred             -----CHHHHHHHH----------------------------------HHhcCCccccCCCEEEEEEecCCcccHHHHHH
Confidence                 222222222                                  22346777788999999999876431 00 0 


Q ss_pred             -----c-----------------------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCc
Q 006333          569 -----N-----------------------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKF  620 (650)
Q Consensus       569 -----g-----------------------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~  620 (650)
                           |                       .......+.++|+++|+|+|+|+++|||+||||+|+.++|+++|||++ ++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~L~lp~-~~  175 (206)
T 3gag_A           97 FHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFAMNLMQVVRVYGYDSVPMRGVDFDAIKTYLDMPN-GW  175 (206)
T ss_dssp             HHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTCCT-TE
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCcCC-Cc
Confidence                 0                       001125678999999999999999999999999999999999999996 67


Q ss_pred             eEEEEEEccccCCcC
Q 006333          621 QSLYHFTVGGPVVDR  635 (650)
Q Consensus       621 ~~ly~~avG~p~~d~  635 (650)
                      .+++.++||||.++.
T Consensus       176 ~~~~~i~lGy~~~~~  190 (206)
T 3gag_A          176 EPILMLPVGKALQAG  190 (206)
T ss_dssp             EEEEEEEEECBSSCC
T ss_pred             ceEEEEEeeccCCCC
Confidence            999999999998764

>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0

Probab=99.84  E-value=1.6e-20  Score=191.72  Aligned_cols=153  Identities=16%  Similarity=0.171  Sum_probs=120.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         2 ~~~~~~i~~RRSiR~F~~-~~V~~e~L~~il~aA~~APS~~---------N~Qpw~~----------ivv~---------   52 (249)
T 3n2s_A            2 NNTIETILNHRSIRSFTD-QLLTAEEIDTLVKSAQAASTSS---------YVQAYSI----------IGVS---------   52 (249)
T ss_dssp             CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred             hHHHHHHHhCcccccCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCcCeEE----------EEEe---------
Confidence            468899999999999998 8999999999999997  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc---
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK---  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y---  568 (650)
                           +.+.++.                                  +..++.+|.++.+++..++++++..+....+   
T Consensus        53 -----d~~~~~~----------------------------------L~~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~   93 (249)
T 3n2s_A           53 -----DPEKKRE----------------------------------LSVLAGNQPYVEKNGHFFVFCADLYRHQQLAEEK   93 (249)
T ss_dssp             -----CHHHHHH----------------------------------HHHHTTSCGGGTSSSEEEEEEEECHHHHHHHHHT
T ss_pred             -----CHHHHHH----------------------------------HHHhhcCchhhHhCcchhhhhhhhHHHHHHHHHc
Confidence                 2222222                                  2223345778889999999999986543221   


Q ss_pred             cc---------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 NV---------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 g~---------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      |.         ..+.....|+|+++|||+|+|+++|||+||||+|  +.++|+++||||+ ++.+++.++||+|.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~slGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~  170 (249)
T 3n2s_A           94 GEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGGIRNELDKVTEVLQTPD-HVLPLFGLAVGHPANLS  170 (249)
T ss_dssp             TCCCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHHTCCT-TEEEEEEEEEECBSCCC
T ss_pred             CCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCEeeeccccccHHHHHHHhCcCC-CceEEEEEEEeeeCCCC
Confidence            11         0122467999999999999999999999999999  7789999999997 67899999999998765

>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}

Probab=99.84  E-value=3.2e-20  Score=184.72  Aligned_cols=180  Identities=11%  Similarity=0.087  Sum_probs=125.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         2 M~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~---------   52 (219)
T 3eo8_A            2 MELQDTIFKRQSVRKFKN-QDVSDEDILKMIKAAGAAPSGK---------NIQNWHF----------VVIK---------   52 (219)
T ss_dssp             CBHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC---------
T ss_pred             CchHHHHHhCeehhccCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE---------
Confidence            789999999999999998 7999999999999997  8865         5799993          4543         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc-HHHHHhhhcccccccccCceEEEEeeecchhh--hcc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD-CQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL--SNK  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd-~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~--~~y  568 (650)
                           +.+.++.|.+.+...+.-..        .......++ ...........|.++.+|+++|+++++.+...  ..+
T Consensus        53 -----~~~~~~~l~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~~  119 (219)
T 3eo8_A           53 -----RRDLMEKIADVITKKQQEIL--------VEMDKVSVDKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYEL  119 (219)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHH--------HHHTTTCHHHHHHHHHHHHHHTGGGGGSSEEEEEEECCCCCTTHHHH
T ss_pred             -----CHHHHHHHHHHHHHHHHHhh--------hcccccccHHHHHHHHhhhhhhhHhhcCCEEEEEEecccchhhhhhh
Confidence                 33444555543221000000        000000001 11111111123678889999999999876421  001


Q ss_pred             cccc-----------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhC----CCCCCceEEEEEEcccc
Q 006333          569 NVWM-----------YPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLG----LTGSKFQSLYHFTVGGP  631 (650)
Q Consensus       569 g~~~-----------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~Lg----L~~~~~~~ly~~avG~p  631 (650)
                      +..+           .+....++|+++|||+|+|+++|||+||||+  |++++++++||    |+++++.+++.++||||
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~L~~~~~lp~~~~~~~~~i~lGyp  199 (219)
T 3eo8_A          120 ELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELGYGSCWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLALGVP  199 (219)
T ss_dssp             HHTTCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCEEEEECTTGGGHHHHHHHHHHHHCCCCTTCEEEEEEEEECB
T ss_pred             hhcccchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCeeeeecCcccChHHHHHHhCcccCCCCCCceEEEEEEEecc
Confidence            1111           3456789999999999999999999999987  89999999999    99756689999999999


Q ss_pred             CCcC
Q 006333          632 VVDR  635 (650)
Q Consensus       632 ~~d~  635 (650)
                      .++.
T Consensus       200 ~~~~  203 (219)
T 3eo8_A          200 EDNL  203 (219)
T ss_dssp             CSSC
T ss_pred             CCCC
Confidence            8764

>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}

Probab=99.83  E-value=2.5e-20  Score=180.22  Aligned_cols=146  Identities=22%  Similarity=0.216  Sum_probs=116.5

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .|++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         5 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~aPs~~---------n~qp~~~----------~vv~--------   56 (178)
T 3e39_A            5 ENPVLQAIRQRRSIRRYTD-EAVSDEAVRLILEAGIWAPSGL---------NNQPCRF----------LVIR--------   56 (178)
T ss_dssp             CCHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEE--------
T ss_pred             chHHHHHHHhCcchhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEE--------
Confidence            4789999999999999997 8999999999999997  8864         5799983          4443        


Q ss_pred             eeeecCCcchh-hHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333          491 LYFLVRNEDHL-GELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN  569 (650)
Q Consensus       491 lY~y~~~~~~l-~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg  569 (650)
                            +.+.+ +.|..                                  ++.+|.++.+|+++|+++++.+...   .
T Consensus        57 ------~~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~~---~   93 (178)
T 3e39_A           57 ------ADDPRCDILAA----------------------------------HTRYGHIVRGAKVIILVFLDREAMY---N   93 (178)
T ss_dssp             ------TTSTHHHHHHT----------------------------------TCSCHHHHHHCSEEEEEEEEGGGCS---C
T ss_pred             ------CHHHHHHHHHH----------------------------------hhhcchhhcCCCEEEEEEEcccccc---c
Confidence                  22222 22221                                  1224567778999999999865321   0


Q ss_pred             cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccC
Q 006333          570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPV  632 (650)
Q Consensus       570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~  632 (650)
                         -...+.|+|+++|||+|+|+++|||+||||  +|++++++++|||+++++.+++.++||||.
T Consensus        94 ---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~~~~~~~~~i~lGyp~  155 (178)
T 3e39_A           94 ---EVKDHQAAGAAVQNMLLAAHALQLGAVWLGEIINQAATLLPALALDPARLSFEAAIAAGHPA  155 (178)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGHHHHHHHTTCCTTTEEEEEEEEEESBS
T ss_pred             ---cccHHHHHHHHHHHHHHHHHHcCCeEEEecCcccchHHHHHHhCcCCCceEEEEEEEEeccC
Confidence               124589999999999999999999999999  899999999999998437999999999997

>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}

Probab=99.83  E-value=3.4e-20  Score=178.48  Aligned_cols=147  Identities=15%  Similarity=0.213  Sum_probs=117.8

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .|++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         5 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~~----------~vv~--------   56 (172)
T 3m5k_A            5 ENQTLETILNRKSVRKYKD-RPVEKEKIDKLIRAGMAAPSSR---------DRRPWEF----------IIVT--------   56 (172)
T ss_dssp             CCHHHHHHHHCCCCCCBCS-SCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred             chHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEc--------
Confidence            4789999999999999997 8999999999999997  8865         5699983          4443        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                            +.+.++.|.+                                  ...+|.++.+|+++|+++++.+..      
T Consensus        57 ------~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~------   90 (172)
T 3m5k_A           57 ------DRKALDTMAE----------------------------------GLPFARMLKETRQAIVVCGDTIKS------   90 (172)
T ss_dssp             ------CHHHHHHHHH----------------------------------HCTTCGGGGGCSEEEEEEEETTTC------
T ss_pred             ------CHHHHHHHHH----------------------------------hcccchhHhcCCEEEEEEecCccC------
Confidence                  2233333322                                  112456778899999999886531      


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                        .+....++|+++|+|+|+|+++|||+||+|+|..    +++++.|||++ ++.+++.++||||.++..
T Consensus        91 --~~~~~~d~g~a~~nl~LaA~~~Glgt~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~  157 (172)
T 3m5k_A           91 --SNAWFLDCSAASQNLLLAAESMGLGAVWTAVYPYPDRIEIVRKELRLPD-HIMPLNVIPVGYPMQKET  157 (172)
T ss_dssp             --TTTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHHHHHHHHTCCT-TEEEEEEEEEECBSSCCC
T ss_pred             --CccHHHHHHHHHHHHHHHHHHcCCeEEEecccCcchhHHHHHHHhCcCC-CcEEEEEEEEeccCCCCC
Confidence              2345789999999999999999999999998875    78999999997 679999999999987764

>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1

Probab=99.83  E-value=1.5e-20  Score=185.26  Aligned_cols=157  Identities=20%  Similarity=0.276  Sum_probs=119.9

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+-      
T Consensus        10 ~~~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~~------   63 (200)
T 2fre_A           10 EYPVDPLFLDRWSPRAFDG-SPMPKEHLLTILDAAHWAPSAS---------NHQPWRF----------VYAHKD------   63 (200)
T ss_dssp             SSCCCTHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEETT------
T ss_pred             CCcHHHHHHhCcCccccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCEEE----------EEEeCc------
Confidence            3567789999999999998 7999999999999986  8865         5799983          444421      


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                             .+.++.|...                     +.           ..+|.++.+|+++|+++++.......+..
T Consensus        64 -------~~~~~~l~~~---------------------~~-----------~~~~~~~~~ap~~iv~~~~~~~~~~~~~~  104 (200)
T 2fre_A           64 -------SEDWPLFVEL---------------------LM-----------EGNQKWAKNASVLLFVISRDHTISHEGEK  104 (200)
T ss_dssp             -------STTHHHHHHT---------------------BC-----------HHHHHHHTTSSEEEEEEEESEEECTTCCE
T ss_pred             -------HHHHHHHHHH---------------------HH-----------hhhhHHHhcCCEEEEEEEecccccCcccc
Confidence                   0122222220                     00           12456778899999999886541111111


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ..++...+++|+++|||+|+|+++|||+|++|+|++++++++|||++ ++.+++.++||+|.++.
T Consensus       105 ~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~  168 (200)
T 2fre_A          105 KPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDIPD-GFKVEAGVAIGTLTDKS  168 (200)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHTTCCT-TEEEEEEEEEECBCCGG
T ss_pred             cccchhhHHHHHHHHHHHHHHHHCCcceeeEcccCHHHHHHHcCCCC-CceEEEEEEEeccCCcc
Confidence            34566789999999999999999999999999999999999999997 67999999999998764

>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0

Probab=99.83  E-value=7.1e-21  Score=189.10  Aligned_cols=154  Identities=14%  Similarity=0.119  Sum_probs=119.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         2 M~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~~a~~aPs~~---------n~qpw~~----------~vv~---------   52 (209)
T 3of4_A            2 MYLEKLQQWRYATADFSG-AHITDDVLDKLLNTTRLTASSY---------GLQPYCT----------LVIR---------   52 (209)
T ss_dssp             CHHHHHHHHCCBCSSBCS-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             CcHHHHHHHhhhHHhcCC-CCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEc---------
Confidence            678999999999999997 8999999999999997  8865         5799993          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhh---cc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLS---NK  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~---~y  568 (650)
                           +.+.+++|+                                  .++.+|.+..+|+++|+++++.+....   .+
T Consensus        53 -----~~~~~~~l~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~   93 (209)
T 3of4_A           53 -----NKGLREQLV----------------------------------NHSFGQQKVADSSALVIFAAKTGAVADIVDPY   93 (209)
T ss_dssp             -----CHHHHHHHH----------------------------------HTTTTCTHHHHSSEEEEEEEECSCTHHHHHHH
T ss_pred             -----CHHHHHHHH----------------------------------HHhcCCcccCCCCeEEEEEecccccHhhHHHH
Confidence                 222222222                                  223467777889999999888654211   11


Q ss_pred             -------cc-----------------------ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCC
Q 006333          569 -------NV-----------------------WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGS  618 (650)
Q Consensus       569 -------g~-----------------------~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~  618 (650)
                             |.                       ........|+|+++|+|+|+|+++|||+||||+|+.++|+++||||+.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~g~~~~~v~~~L~lp~~  173 (209)
T 3of4_A           94 ISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYIGLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDL  173 (209)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCC
Confidence                   00                       011234689999999999999999999999999999999999999863


Q ss_pred             CceEEEEEEccccCCcC
Q 006333          619 KFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       619 ~~~~ly~~avG~p~~d~  635 (650)
                      ++.+++.++||||.++.
T Consensus       174 ~~~~~~~ialGyp~~~~  190 (209)
T 3of4_A          174 GLSTVFACPVGYRSEAD  190 (209)
T ss_dssp             TEEEEEEEEEECBCTTC
T ss_pred             CceEEEEEEeecCCccc
Confidence            57899999999999774

>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.83  E-value=3.9e-20  Score=178.60  Aligned_cols=147  Identities=13%  Similarity=0.197  Sum_probs=118.2

Q ss_pred             CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      ..+++.++|++|||+|+|++ .+|+.++|.+||+++.  ||++         |.|||++          ++|.       
T Consensus         8 ~~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qp~~~----------~vv~-------   60 (175)
T 3kwk_A            8 TGNAALDNIFERKSVRTYLN-KGVEKEKIDLMLRAGMSAPSGK---------DVRPWEF----------VVVS-------   60 (175)
T ss_dssp             CCCHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC-------
T ss_pred             CchHHHHHHHhCcCccCCCC-CCCCHHHHHHHHHHHHHCcCcc---------CCCCeEE----------EEEe-------
Confidence            34789999999999999997 8999999999999997  8865         5699983          4443       


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN  569 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg  569 (650)
                             +.+.++.|..                                  ...+|.++.+|+++|+++++.+..     
T Consensus        61 -------~~~~~~~l~~----------------------------------~~~~~~~~~~Ap~~iv~~~~~~~~-----   94 (175)
T 3kwk_A           61 -------DRAKLDSMAA----------------------------------ALPYAKMLTQARNAIIVCGDSARS-----   94 (175)
T ss_dssp             -------CHHHHHHHHH----------------------------------HCTTCGGGGGCSEEEEEEEETTTC-----
T ss_pred             -------CHHHHHHHHH----------------------------------hcccchhhhcCCEEEEEEEeCccc-----
Confidence                   2233333322                                  122466788899999999886531     


Q ss_pred             cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                          +....|+|+++|||+|+|+++|||+||+|+|..    ++++++|||++ ++.+++.++||||.++..
T Consensus        95 ----~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~  160 (175)
T 3kwk_A           95 ----FYWYLDCSAAAQNILLAAESMGLGAVWTAAYPYEDRMEVVRKYTHLPE-NILPLCVIPFGYPATKEQ  160 (175)
T ss_dssp             ----TTHHHHHHHHHHHHHHHHHHTTCEECCEECTTCHHHHHHHHHHHTCCT-TEEEEEEEEEESBSSCCC
T ss_pred             ----cchHHHHHHHHHHHHHHHHHcCCCeEEEccccccchHHHHHHHhCcCC-CcEEEEEEEEeccCCCCC
Confidence                245789999999999999999999999998875    78999999997 679999999999988764

>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*

Probab=99.83  E-value=4.5e-20  Score=187.28  Aligned_cols=153  Identities=18%  Similarity=0.210  Sum_probs=119.4

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.         
T Consensus         2 ~~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------ivv~---------   52 (240)
T 1bkj_A            2 NNTIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSS---------MLQVVSI----------VRVT---------   52 (240)
T ss_dssp             CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC---------
T ss_pred             hHHHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHhCCCcc---------CCCCEEE----------EEEc---------
Confidence            368899999999999998 7999999999999986  8864         5789983          3332         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                           +.+.++.|                                  ..++.+|.++.++++.+++++++.+....+...
T Consensus        53 -----~~~~~~~l----------------------------------~~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~   93 (240)
T 1bkj_A           53 -----DSEKRNEL----------------------------------AQFAGNQAYVESAAEFLVFCIDYQRHATINPDV   93 (240)
T ss_dssp             -----CHHHHHHH----------------------------------HHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTC
T ss_pred             -----CHHHHHHH----------------------------------HHHhCCCchhhcCchhhHHHHhhHHHHHHHHHh
Confidence                 22222222                                  222335777778899999999877644332221


Q ss_pred             ------cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          572 ------MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       572 ------~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                            .+.....|+|+++|+|+|+|+++|||+||||+|  ++++|+++||||+ ++.+++.++||+|.++.
T Consensus        94 ~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~  164 (240)
T 1bkj_A           94 QADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPE-NSAVLFGMCLGHPDQNP  164 (240)
T ss_dssp             CCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBSCCC
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCHHHHHHHhCcCC-CeeEEEEEEEeccCCCC
Confidence                  234567899999999999999999999999998  6789999999997 57899999999998765

>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*

Probab=99.83  E-value=5e-20  Score=180.65  Aligned_cols=149  Identities=16%  Similarity=0.261  Sum_probs=117.1

Q ss_pred             CCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          412 KGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       412 ~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      ..+++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.       
T Consensus        18 ~~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~-------   70 (191)
T 3h4o_A           18 QGMNFVELAKKRYSCRNYQD-RKVEKEKLEKVLDVARIAPTGG---------NRQPQRL----------IVIQ-------   70 (191)
T ss_dssp             --CCHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHHSCCGG---------GCCCEEE----------EEEC-------
T ss_pred             CHHHHHHHHHhCccccccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEe-------
Confidence            45789999999999999997 8999999999999997  8865         5799983          4443       


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN  569 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg  569 (650)
                             +.+.++.|...                                  . .   ..+|+++|+++++.+.....+ 
T Consensus        71 -------~~e~~~~l~~~----------------------------------~-~---~~~Ap~~ivv~~~~~~~~~~~-  104 (191)
T 3h4o_A           71 -------EKEGINKLSKA----------------------------------A-N---IYDAPLAILVCGDKDKVWTRP-  104 (191)
T ss_dssp             -------SHHHHHHHHHH----------------------------------S-C---CTTCSEEEEEEEETTTSCBCT-
T ss_pred             -------CHHHHHHHHHh----------------------------------c-C---cCCCCEEEEEEEecchhcccc-
Confidence                   22332223220                                  0 0   357899999999876533221 


Q ss_pred             cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                      ...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.++
T Consensus       105 ~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGyp~~~  168 (191)
T 3h4o_A          105 FDGKQLTDIDTSIVTDHMMLQATELGLASVWVCYFNPDIIREEFSLPD-NLEPINILLMGYESKI  168 (191)
T ss_dssp             TTCCBCHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCT-TEEEEEEEEEECBSSC
T ss_pred             cccccchHHHHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCcCC-CceEEEEEEEeccCCc
Confidence            123456789999999999999999999999999999999999999997 6799999999999877

>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0

Probab=99.83  E-value=4.7e-20  Score=188.15  Aligned_cols=152  Identities=14%  Similarity=0.153  Sum_probs=118.8

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.          
T Consensus         1 d~~e~i~~RRSvR~F~~-~pV~~e~L~~ileaA~~APS~~---------N~Qpw~f----------ivv~----------   50 (248)
T 3eof_A            1 GMMDTVKNRRTIRKYQQ-KDITPDLLNDLLETSFRASTMG---------GMQLYSV----------VVTR----------   50 (248)
T ss_dssp             CHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC----------
T ss_pred             ChHHHHHhCccccCCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCcCeEE----------EEEE----------
Confidence            36789999999999998 8999999999999997  8865         5799983          4443          


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc----
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK----  568 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y----  568 (650)
                          +.+.++.                                  +..++.+|.++.+|+++|+++++..+.....    
T Consensus        51 ----~~e~~~~----------------------------------L~~~~~~~~~~~~Ap~~ivv~~d~~~~~~~~~~~~   92 (248)
T 3eof_A           51 ----DAEKKEI----------------------------------LSPAHFNQPMVKEAPVVLTFCADFRRFCKYCQERN   92 (248)
T ss_dssp             ----CHHHHHH----------------------------------HTTTTTTCTHHHHSSEEEEEEEECHHHHHHHHTTT
T ss_pred             ----CHHHHHH----------------------------------HHHHhcCCCcccCCCEEEEEEEechHhHHHHHhhc
Confidence                2222111                                  1122336777888999999999976532110    


Q ss_pred             cccc------chHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--cchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 NVWM------YPRLFWETGVLGQVLYLEAHAVGISATGIGC--FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 g~~~------Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      +..+      +.....|+|+++|+|+|+|+++|||+||||+  |+.++|+++||||+ ++.+++.++||+|.++.
T Consensus        93 ~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLGsc~ig~~~~~~~~v~~~L~lp~-~~~~v~~i~lGyp~~~~  166 (248)
T 3eof_A           93 AVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTTYNPQMIIDALHLPE-LVFPITTVTVGYPAESP  166 (248)
T ss_dssp             CCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGTSHHHHHHHHTCCT-TEEEEEEEEEECBCCCC
T ss_pred             cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCcCC-CceEEEEEEEeeeCCCC
Confidence            1112      2356899999999999999999999999998  88889999999998 67999999999998765

>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1

Probab=99.82  E-value=4.2e-20  Score=187.48  Aligned_cols=153  Identities=18%  Similarity=0.140  Sum_probs=118.9

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.         
T Consensus         2 ~~~~~~i~~RRSiR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------ivv~---------   52 (240)
T 1f5v_A            2 TPTIELICGHRSIRHFTD-EPISEAQREAIINSARATSSSS---------FLQCSSI----------IRIT---------   52 (240)
T ss_dssp             CHHHHHHHTCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC---------
T ss_pred             hHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCCCcc---------cCCCeEE----------EEEe---------
Confidence            468899999999999998 7999999999999986  8864         5789983          3432         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc-
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV-  570 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~-  570 (650)
                           +.+.++.|                                  ..++.+|.++.+++..+++++++.+....+.. 
T Consensus        53 -----~~~~~~~l----------------------------------~~~~~~~~~~~~ap~~iv~~~d~~~~~~~~~~~   93 (240)
T 1f5v_A           53 -----DKALREEL----------------------------------VTLTGGQKHVAQAAEFWVFCADFNRHLQICPDA   93 (240)
T ss_dssp             -----CHHHHHHH----------------------------------HHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTC
T ss_pred             -----CHHHHHHH----------------------------------HHHhcCChhHHcccHHHHHHHHHHHHHHhhhhh
Confidence                 22222222                                  22233567777889999999987654322211 


Q ss_pred             -----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          571 -----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       571 -----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                           ..++....|+|+++|||+|+|+++|||+||||+|  ++++|+++||||+ ++.+++.++||+|.++.
T Consensus        94 ~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~  164 (240)
T 1f5v_A           94 QLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQ-HVLPLFGLCLGWPADNP  164 (240)
T ss_dssp             CCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBCCCC
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHHHHHHHhCCCC-CceEEEEEEEeccCCCC
Confidence                 2345668999999999999999999999999998  6789999999997 57899999999998764

>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}

Probab=99.82  E-value=1.4e-19  Score=176.30  Aligned_cols=161  Identities=15%  Similarity=0.163  Sum_probs=120.2

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         4 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qpw~f----------~vv~---------   54 (189)
T 3pxv_A            4 NETLKVIAERYSCRDFKN-EMPSDELLQAIAEAAIQAPSGM---------NRQAWRV----------IVVK---------   54 (189)
T ss_dssp             CHHHHHHHHCCCCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCBCE----------EEEC---------
T ss_pred             HHHHHHHHhCeehhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEc---------
Confidence            578999999999999997 8999999999999997  8865         5699993          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                           +++.++.|.+.+...+..              ...++  ........++.++.+|+++|+++++.+..       
T Consensus        55 -----~~~~~~~l~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~-------  106 (189)
T 3pxv_A           55 -----NKELMQEMEAEGLAYLAG--------------MEDQS--SYNRIMERGGRLFYGAPCMIVVPIDPTQY-------  106 (189)
T ss_dssp             -----CHHHHHHHHHHHHHHHHT--------------SSSCH--HHHHHHHTTSCTTTTCSEEEEEEECGGGH-------
T ss_pred             -----CHHHHHHHHHHHHHHHHh--------------cccCc--HHHHHHhcccCccCCCCEEEEEEecCCCC-------
Confidence                 233445555543221110              00111  11122223456788999999988875421       


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc--------cchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGC--------FFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~--------f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                        ...+.|+|+++|||+|+|+++|||+||+|+        |++++++++|||++ ++.+++.++||||.++
T Consensus       107 --~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~  174 (189)
T 3pxv_A          107 --GPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASGLRAEEFSKRLGFPE-GYAFGCSVLLGHANTT  174 (189)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHTTCEEEECGGGGGGGTTSTTHHHHHHHHTCCT-TCEEEEEEEEECBSSC
T ss_pred             --cchhhhHHHHHHHHHHHHHHCCCceehhccHHHhhccccchHHHHHHcCcCC-CcEEEEEEEEecCCCC
Confidence              123789999999999999999999999997        67789999999997 5789999999999876

>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1

Probab=99.82  E-value=4.5e-20  Score=181.64  Aligned_cols=154  Identities=18%  Similarity=0.177  Sum_probs=114.6

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         7 ~m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~--------   58 (205)
T 1nox_A            7 VLDAKTAALKRRSIRRYRK-DPVPEGLLREILEAALRAPSAW---------NLQPWRI----------VVVR--------   58 (205)
T ss_dssp             CCCHHHHHHHCCCCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCEEE----------EEEC--------
T ss_pred             cchHHHHHHHhhhhccCCC-CCCCHHHHHHHHHHHhhCcCcC---------CccceEE----------EEEc--------
Confidence            4789999999999999998 6999999999999997  8865         5799983          4443        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecch---hh--
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEP---TL--  565 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~---~~--  565 (650)
                            +.+.++.|.+                                  ++.+|....+++..++++++...   ..  
T Consensus        59 ------~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~   98 (205)
T 1nox_A           59 ------DPATKRALRE----------------------------------AAFGQAHVEEAPVVLVLYADLEDALAHLDE   98 (205)
T ss_dssp             ------CHHHHHHHHH----------------------------------HTTTCTHHHHSSEEEEEEECHHHHHHTGGG
T ss_pred             ------CHHHHHHHHH----------------------------------hccCChhhcCCCeEEEEEecccchHHHHHH
Confidence                  2222222322                                  12234444556666666666431   00  


Q ss_pred             -------------------hccc----cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceE
Q 006333          566 -------------------SNKN----VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQS  622 (650)
Q Consensus       566 -------------------~~yg----~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~  622 (650)
                                         ..|+    ...+...+.++|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~-~~~~  177 (205)
T 1nox_A           99 VIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPS-RAAI  177 (205)
T ss_dssp             TSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TCEE
T ss_pred             HHHhccCcHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHhCCCC-CCce
Confidence                               0110    011355689999999999999999999999999999999999999997 6789


Q ss_pred             EEEEEccccCCcC
Q 006333          623 LYHFTVGGPVVDR  635 (650)
Q Consensus       623 ly~~avG~p~~d~  635 (650)
                      ++.++||+|.++.
T Consensus       178 ~~~i~lGyp~~~~  190 (205)
T 1nox_A          178 PALVALGYPAEEG  190 (205)
T ss_dssp             EEEEEEESBSSCC
T ss_pred             EEEEEeccCCCCC
Confidence            9999999998764

>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1

Probab=99.82  E-value=3.7e-20  Score=189.66  Aligned_cols=153  Identities=16%  Similarity=0.148  Sum_probs=118.7

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.         
T Consensus         2 ~~~~~~i~~RRSiR~F~~-~~V~~e~l~~il~aA~~APS~~---------n~Qpw~~----------ivv~---------   52 (255)
T 1zch_A            2 NEVIKSLTDHRSIRSYTD-EPVAQEQLDQIIEAVQSAPSSI---------NGQQVTV----------ITVQ---------   52 (255)
T ss_dssp             CHHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHHSCCGG---------GCCCEEE----------EEEC---------
T ss_pred             hHHHHHHHhCccccCcCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCEEE----------EEEc---------
Confidence            468899999999999998 7999999999999997  8864         5799983          3433         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc---
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK---  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y---  568 (650)
                           +.+.++.|.                                  .++.+|.++.+++..+++++++.+....+   
T Consensus        53 -----d~~~~~~L~----------------------------------~~~~~q~~~~~ap~~iv~~~d~~~~~~~~~~~   93 (255)
T 1zch_A           53 -----DKERKKKIS----------------------------------ELAGGQPWIDQAPVFLLFCADFNRAKIALEDL   93 (255)
T ss_dssp             -----CHHHHHHHH----------------------------------HHTTCCHHHHHSSEEEEEEEECHHHHHHHHHH
T ss_pred             -----CHHHHHHHH----------------------------------HhhccchhhhcCCceeEEEEechHHHHHHHHh
Confidence                 222222222                                  22335677778899999999876543211   


Q ss_pred             -c--------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 -N--------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 -g--------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                       |        ...+.....|+|+++|||+|+|+++|||+||||+|  ++++|+++||||+ ++.+++.++||+|.++.
T Consensus        94 ~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~~~~~~~v~~~L~lp~-~~~~~~~l~lGyp~~~~  170 (255)
T 1zch_A           94 HDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPK-YVFPLSGLVIGHPADRS  170 (255)
T ss_dssp             HCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHTTCCT-TEEEEEEEEEECBSCCC
T ss_pred             cCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCcEeeecccccCHHHHHHHhCcCC-CceEEEEEEEeccCCCC
Confidence             1        01234578999999999999999999999999998  7889999999997 57899999999998764

>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1

Probab=99.82  E-value=6.7e-20  Score=180.45  Aligned_cols=152  Identities=18%  Similarity=0.229  Sum_probs=114.2

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         4 m~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~---------   54 (204)
T 2b67_A            4 MKFLELNKKRHATKHFTD-KLVDPKDVRTAIEIATLAPSAH---------NSQPWKF----------VVVR---------   54 (204)
T ss_dssp             CHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEES---------
T ss_pred             hHHHHHHHhhhhhhccCC-CCCCHHHHHHHHHHHHhCcCcc---------cCCCeEE----------EecC---------
Confidence            678999999999999997 8999999999999997  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------  565 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------  565 (650)
                           +++ + +|..                      +.. +         .+|....+++++++++++.+...      
T Consensus        55 -----~~~-~-~l~~----------------------~~~-~---------~~~~~~~~a~~~iv~~~~~~~~~~~~~~~   95 (204)
T 2b67_A           55 -----EKN-A-ELAK----------------------LAY-G---------SNFEQVSSAPVTIALFTDTDLAKRARKIA   95 (204)
T ss_dssp             -----SSH-H-HHHT----------------------TBC-T---------THHHHHHHSSEEEEEEEESCHHHHHHHHH
T ss_pred             -----Chh-H-HHHH----------------------HHH-H---------cCchhhcCCCEEEEEEecCchHHHHHHHH
Confidence                 121 1 2221                      000 0         23445567888888888764210      


Q ss_pred             -------------hccc-----------c-ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCc
Q 006333          566 -------------SNKN-----------V-WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKF  620 (650)
Q Consensus       566 -------------~~yg-----------~-~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~  620 (650)
                                   ..|+           . ..+.....|+|+++|+|+|+|+++|||+||||+|++++|+++|||++ ++
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~-~~  174 (204)
T 2b67_A           96 RVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVAMNLVLALTDQGIGSNIILGFDKSKVNEVLEIED-RF  174 (204)
T ss_dssp             HHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TE
T ss_pred             HcccchhhHHHHHHHHHhhhhhhhhccCHHHHHHHHHHHHHHHHHHHHHHHHHCCCceeeEcccCHHHHHHHhCCCC-CC
Confidence                         0011           0 01124567999999999999999999999999999999999999997 67


Q ss_pred             eEEEEEEccccCCc
Q 006333          621 QSLYHFTVGGPVVD  634 (650)
Q Consensus       621 ~~ly~~avG~p~~d  634 (650)
                      .+++.++||||.++
T Consensus       175 ~~~~~i~lGyp~~~  188 (204)
T 2b67_A          175 RPELLITVGYTDEK  188 (204)
T ss_dssp             EEEEEEEEECBSSC
T ss_pred             ceEEEEEeecCCCC
Confidence            89999999999876

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.82  E-value=3.9e-20  Score=195.76  Aligned_cols=155  Identities=14%  Similarity=0.180  Sum_probs=121.2

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      ++++.++|++|||+|+|++ ++|+.|+|.+||++++  ||++         |.|||++          ++|.        
T Consensus       141 ~~~~~~~I~~RRSiR~F~~-~~V~~e~l~~ileaA~~APS~~---------N~Qpwrf----------ivv~--------  192 (322)
T 4eo3_A          141 DLSLNKHIEWRRARRALKK-DRVPREELELLIKAAHLAPSCM---------NNQPWRF----------VVVD--------  192 (322)
T ss_dssp             HTSCCHHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC--------
T ss_pred             hhHHHHHHHhhhccCCcCc-cccCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEe--------
Confidence            4677899999999999998 7999999999999997  9875         5799993          4543        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                            +++.++.|.+                                 .+..+|.++.+|+++|+++++.+.....  .
T Consensus       193 ------d~e~~~~l~~---------------------------------~~~~~~~~~~~Ap~~ivv~~~~~~~~~~--~  231 (322)
T 4eo3_A          193 ------EEELLKKIHE---------------------------------ALPGGNYWMKNAPALIAVHSKKDFDCAL--P  231 (322)
T ss_dssp             ------CHHHHHHHHT---------------------------------TSCGGGGGGGGCSEEEEEEECGGGSCEE--T
T ss_pred             ------CHHHHHHHHH---------------------------------hhhhccccccCCCEEEEEEeeccccccc--c
Confidence                  2333222221                                 1112456778899999888875432211  1


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCcc
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI  637 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~  637 (650)
                      ....+...|+|+++|||+|+|+++|||+||||+|+.++|+++||||+ ++.+++.++||||.++..+
T Consensus       232 ~~~~~~~~d~g~a~~nl~LaA~~~GLgs~~~~~~~~~~v~~~L~lP~-~~~~~~~ialGyp~e~~~~  297 (322)
T 4eo3_A          232 DNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIPE-DHVLITLIAVGYLGDESEL  297 (322)
T ss_dssp             TTEECHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TSEEEEEEEEECBCCGGGS
T ss_pred             ccccchHHHHHHHHHHHHHHHHHcCcCEEEcCccCHHHHHHHcCcCC-CCEEEEEEEEeCcCCccCC
Confidence            22345678999999999999999999999999999999999999997 6799999999999887643

>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}

Probab=99.82  E-value=8.1e-20  Score=174.92  Aligned_cols=144  Identities=15%  Similarity=0.290  Sum_probs=113.5

Q ss_pred             HHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeeeec
Q 006333          418 EVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYFLV  495 (650)
Q Consensus       418 e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~y~  495 (650)
                      ++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.             
T Consensus         3 ~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qp~~~----------~vv~-------------   49 (168)
T 3e10_A            3 DIINNRRSIRNYKG-KKVEKEKIEKLLRAAMQAPSAG---------NQQPWEF----------IVLE-------------   49 (168)
T ss_dssp             CHHHHCCBCCCBCS-SCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC-------------
T ss_pred             hHHhhccccccCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEc-------------
Confidence            57999999999998 8999999999999997  8865         5689983          3433             


Q ss_pred             CCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccccchH
Q 006333          496 RNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVWMYPR  575 (650)
Q Consensus       496 ~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~  575 (650)
                       +++.++.|.                                  .....|.++.+|+++|+++++.+..  +    ..+.
T Consensus        50 -~~~~~~~l~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~--~----~~~~   88 (168)
T 3e10_A           50 -DRENIDKLS----------------------------------NFSKYANSLKTAPLAIVLLADEEKM--K----ISEM   88 (168)
T ss_dssp             -CHHHHHHHG----------------------------------GGSTTCGGGGGCSEEEEEEEEGGGC--S----SGGG
T ss_pred             -CHHHHHHHH----------------------------------HhcccchhhhcCCEEEEEEEccccc--c----Ccch
Confidence             222222221                                  1122467788899999999986532  1    1245


Q ss_pred             HHHHHhHHHHHHHHHHHHcCCCeeeeCccch----HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          576 LFWETGVLGQVLYLEAHAVGISATGIGCFFD----DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       576 ~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d----d~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                      ...|+|+++|+|+|+|+++|||+||+|+|..    ++++++|||++ ++.+++.++||+|.++..
T Consensus        89 ~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~~  152 (168)
T 3e10_A           89 WEQDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKEMFNLKS-NIKPFCVISVGYPENSEN  152 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHHHTTCCT-TEEEEEEEEEECBSSCCC
T ss_pred             HHHHHHHHHHHHHHHHHHCCCeEEEEecccccchhHHHHHHcCcCC-CceEEEEEEEeccCCCCC
Confidence            6789999999999999999999999998875    89999999987 679999999999987753

>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*

Probab=99.82  E-value=7.8e-20  Score=181.51  Aligned_cols=156  Identities=8%  Similarity=0.022  Sum_probs=116.8

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++.++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         3 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~---------   54 (218)
T 1vfr_A            3 HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSI---------NSQPWKF----------IVIE---------   54 (218)
T ss_dssp             CHHHHHHHHCCBCSSBCTTCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             ccHHHHHHhhhhhhhcCCCCCCCHHHHHHHHHHHHhCcccC---------CCCCeEE----------EEec---------
Confidence            57899999999999998327999999999999996  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh------
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL------  565 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~------  565 (650)
                           +.+.++.|.+.+..                             .+..+|....+++.+++++++.....      
T Consensus        55 -----~~e~~~~l~~~~~~-----------------------------~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~  100 (218)
T 1vfr_A           55 -----SDAAKQRMHDSFAN-----------------------------MHQFNQPHIKACSHVILFANKLSYTRDDYDVV  100 (218)
T ss_dssp             -----SHHHHHHHHHTTSS-----------------------------SCGGGTHHHHHSSEEEEEEEESCCCHHHHHHH
T ss_pred             -----CHHHHHHHHHHhcc-----------------------------chhcCchhhcCCCEEEEEEECCcccHHHHHHH
Confidence                 23334444432110                             01124556677888888888764210      


Q ss_pred             -------hc---------c------------ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCC-
Q 006333          566 -------SN---------K------------NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLT-  616 (650)
Q Consensus       566 -------~~---------y------------g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~-  616 (650)
                             ..         +            +...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||+ 
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~  180 (218)
T 1vfr_A          101 LSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADEL  180 (218)
T ss_dssp             HHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTT
T ss_pred             HHHHHhhcccchHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHhCCCc
Confidence                   00         0            112234566899999999999999999999999999999999999999 


Q ss_pred             CCCceEEEEEEccccC
Q 006333          617 GSKFQSLYHFTVGGPV  632 (650)
Q Consensus       617 ~~~~~~ly~~avG~p~  632 (650)
                      + ++.+++.++||||.
T Consensus       181 ~-~~~~~~~i~lGy~~  195 (218)
T 1vfr_A          181 K-GYECHVALAIGYHH  195 (218)
T ss_dssp             T-TEEEEEEEEEECBC
T ss_pred             c-cceEEEEEEeecCC
Confidence            6 67999999999998

>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}

Probab=99.81  E-value=2.4e-19  Score=175.66  Aligned_cols=174  Identities=18%  Similarity=0.189  Sum_probs=118.2

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+- ++     
T Consensus         2 ~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~~~-~~-----   55 (198)
T 3gfa_A            2 MISDSISKRRSIRKYKN-QSISHETIEKIIEAGINAPSSK---------NRQPWRF----------VVITEK-EK-----   55 (198)
T ss_dssp             CHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEECTT-TH-----
T ss_pred             hHHHHHHhchhhhcCCC-CCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEeCh-HH-----
Confidence            47899999999999998 7999999999999997  8865         5799983          444320 00     


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhc-cc--
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSN-KN--  569 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~-yg--  569 (650)
                           .+.++.+++.+.....+..         +  +  .+..........+|.++.+|+++|+++++.+..... ++  
T Consensus        56 -----~~l~~~~~~~~~~~~~~~~---------~--~--~~~~~~~~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~  117 (198)
T 3gfa_A           56 -----ESMLKAMSKGIQNEINDNG---------L--L--PGSRQHIAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPE  117 (198)
T ss_dssp             -----HHHHHHHHHHHHHHHTTCS---------S--C--GGGGGGHHHHHHHHHHHHHSSEEEEEEETTCCCTTSCCCHH
T ss_pred             -----HHHHHHHHHHHhhcccccc---------c--C--hhhHHHHHHHHHHhhhhhCCCEEEEEEEcCcccchhhcccc
Confidence                 0111122222211110100         0  0  011111111122467788999999999986543211 11  


Q ss_pred             cc-cchHHHHHHhHHHHHHHHHHHHcCCCeeee--CccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          570 VW-MYPRLFWETGVLGQVLYLEAHAVGISATGI--GCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       570 ~~-~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~I--g~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      .+ .....+.|+|+++|||+|+|+++|||+||+  ++|++++++++|||+++   +++.++||||.++.
T Consensus       118 ~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l~lp~~---~~~~i~lGyp~~~~  183 (198)
T 3gfa_A          118 ERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVYFAYRELCEWLNTDSQ---LVAAISLGYPDEEP  183 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGGGHHHHHHHHTCSSE---EEEEEEEECBSCCC
T ss_pred             ccccchhhHHHHHHHHHHHHHHHHHCCCeeeeecCcccCcHHHHHHhCCCcc---eEEEEEEecCCCCC
Confidence            01 123557899999999999999999999999  78999999999999973   99999999998764

>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}

Probab=99.80  E-value=6.6e-20  Score=182.00  Aligned_cols=152  Identities=15%  Similarity=0.169  Sum_probs=112.8

Q ss_pred             cHHHHHHhcCCCCCCCCCCC-CCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          415 TVREVVRKRRSAVDMDGVTA-IDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~-I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      .+.++|++|||+|+|++ ++ |+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         8 ~~~~~i~~RrSvR~f~~-~~~V~~e~l~~ileaa~~APS~~---------N~Qpw~f----------ivv~---------   58 (210)
T 3qdl_A            8 KRRQLLNERHSCKMFDS-HYEFSSTELEEIAEIARLSPSSY---------NTQPWHF----------VMVT---------   58 (210)
T ss_dssp             HHHHHHHHSCBCCCBCT-TCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             HHHHHHHhchhHhhcCC-CCCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEc---------
Confidence            46679999999999998 55 99999999999997  8875         5799993          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhh--h--
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTL--S--  566 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~--~--  566 (650)
                           +++.+++|.+                                  ++. +|.+..+|+++++++++.....  .  
T Consensus        59 -----~~~~~~~l~~----------------------------------~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~   99 (210)
T 3qdl_A           59 -----DKDLKKQIAA----------------------------------HSYFNEEMIKSASALMVVCSLRPSELLPHGH   99 (210)
T ss_dssp             -----CHHHHHHHHT----------------------------------TSGGGHHHHHHCSEEEEEEECCHHHHCC---
T ss_pred             -----CHHHHHHHHH----------------------------------HHhhcchhhcCCCEEEEEEecchHHHHHHHH
Confidence                 2332222221                                  111 4556677888777776532110  0  


Q ss_pred             ---c--------------------ccc----ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCC-CC
Q 006333          567 ---N--------------------KNV----WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLT-GS  618 (650)
Q Consensus       567 ---~--------------------yg~----~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~-~~  618 (650)
                         .                    ++.    +...+...|+|+++|+|+|+|+++|||+||||+|+.++++++|||+ + 
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~~~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~~-  178 (210)
T 3qdl_A          100 YMQNLYPESYKVRVIPSFAQMLGVRFNHSMQRLESYILEQCYIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERIN-  178 (210)
T ss_dssp             -----------------------------CCHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHHHTTSC-
T ss_pred             HHccCCcHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCceeecccCHHHHHHHhCCCCC-
Confidence               0                    000    0113457899999999999999999999999999999999999999 6 


Q ss_pred             CceEEEEEEccccCCcC
Q 006333          619 KFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       619 ~~~~ly~~avG~p~~d~  635 (650)
                      ++.+++.++||||.++.
T Consensus       179 ~~~~~~~i~~Gy~~~~~  195 (210)
T 3qdl_A          179 KPKIACLIALGKRVAEA  195 (210)
T ss_dssp             CCEEEEEEEEECBSSCC
T ss_pred             CceEEEEEEeeccCCCC
Confidence            67999999999998765

>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=9.1e-19  Score=172.11  Aligned_cols=165  Identities=14%  Similarity=0.149  Sum_probs=119.9

Q ss_pred             CcHHHHHHhcCCCC-CCCCCCCCC-HHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          414 FTVREVVRKRRSAV-DMDGVTAID-RETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       414 ~~l~e~I~~RRS~R-~F~~~~~I~-~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      +++.++|++|||+| +|++ ++++ .++|.+||+++.  ||++         |.|||++          ++|.       
T Consensus         9 ~~~~~~i~~RrSvR~~f~~-~~v~~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~-------   61 (197)
T 3k6h_A            9 IKLLDYLRVRRSTPALQLS-EPGPSKGEIEEILRLAVRVPDHG---------KLAPWRF----------VVYR-------   61 (197)
T ss_dssp             CBHHHHHTTCCCCCSTTCB-SCCCCHHHHHHHHHHHTCSCCTT---------SCCCEEE----------EEEE-------
T ss_pred             HHHHHHHHhccCCCccccC-CCCCCHHHHHHHHHHHHhCcCcC---------CCcCeEE----------EEEc-------
Confidence            57999999999999 8998 7897 999999999997  9876         5799993          4543       


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccc
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKN  569 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg  569 (650)
                             ++ .+++|.+.+...+.-..    |.      +...       ....+|.++.+|+++|+++++.+... ++ 
T Consensus        62 -------~~-~~~~l~~~~~~~~~~~~----~~------~~~~-------~~~~~~~~~~~Ap~~ivv~~~~~~~~-~~-  114 (197)
T 3k6h_A           62 -------GE-ERVRLSEAALRIALEKN----PD------LDLQ-------QQEAERTRFTRAPVVIAVISTAKPHF-KI-  114 (197)
T ss_dssp             -------TH-HHHHHHHHHHHHHHHHS----SS------CCHH-------HHHHHHTTTTSSSEEEEEEECCCCCS-SS-
T ss_pred             -------ch-HHHHHHHHHHHHHHhcC----CC------CCHH-------HHHHHHhhhhcCCEEEEEEEecCCCC-CC-
Confidence                   22 34455544321110000    00      0000       01124678889999999998865321 11 


Q ss_pred             cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          570 VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       570 ~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                        .....+.++|+++|||+|+|+++|||+||+|++  ++++++++|||++ ++.+++.++||||.+..
T Consensus       115 --~~~~~~~d~g~a~~nl~LaA~~~GLgt~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGyp~~~~  179 (197)
T 3k6h_A          115 --PEWEQVMSAGAVCLNVIFAANASGFAANWLTEWLAFDPAFLAEIGVSA-EEKVAGYIHIGSTTFPP  179 (197)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCGGGTCHHHHHHHTCCS-SCEEEEEEEEEBCCCCC
T ss_pred             --CHHHHHHHHHHHHHHHHHHHHHCCCceEEecCccccCHHHHHHhCcCC-CCEEEEEEEEeCCCCCC
Confidence              112357899999999999999999999999974  6777999999997 67999999999998754

>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}

Probab=99.80  E-value=1.7e-19  Score=180.08  Aligned_cols=154  Identities=16%  Similarity=0.134  Sum_probs=115.1

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus        10 ~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~---------   60 (224)
T 2hay_A           10 HQIQQALHFRTAVRVYKE-EKISDEDLALILDAAWLSPSSI---------GLEGWRF----------VVLD---------   60 (224)
T ss_dssp             HHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred             HHHHHHHHhchhhhccCC-CCCCHHHHHHHHHHHHhCcccc---------CCCCeEE----------EEEC---------
Confidence            578899999999999996 8999999999999986  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhh-hc--
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTL-SN--  567 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~-~~--  567 (650)
                           +.+.++.|.                                  .++. +|....+++.+++++++.+... ..  
T Consensus        61 -----~~~~~~~l~----------------------------------~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~  101 (224)
T 2hay_A           61 -----NKPIKEEIK----------------------------------PFAWGAQYQLETASHFILLIAEKHARYDSPAI  101 (224)
T ss_dssp             -----CHHHHHHHG----------------------------------GGCTTCHHHHHHCSEEEEEEEESCCCTTSHHH
T ss_pred             -----CHHHHHHHH----------------------------------HHHhccccccCCCCeEEEEEeccccccCHHHH
Confidence                 222222221                                  1111 3445566777888887754200 00  


Q ss_pred             ----------------------------------cccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh
Q 006333          568 ----------------------------------KNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL  613 (650)
Q Consensus       568 ----------------------------------yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L  613 (650)
                                                        +....+.....++|+++|+|+|+|+++|||+||||+|++++|+++|
T Consensus       102 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l  181 (224)
T 2hay_A          102 KNSLLRRGIKEGDGLNSRLKLYESFQKEDMDMADNPRALFDWTAKQTYIALGNMMMTAALLGIDTCPIEGFHYDKVNHIL  181 (224)
T ss_dssp             HHHHHHTTCCSSSSHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHH
T ss_pred             HHHHHHcCCCChhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCCCCcCHHHHHHHH
Confidence                                              0111234568999999999999999999999999999999999999


Q ss_pred             ---C-CCCCCceEEEEEEccccCCcC
Q 006333          614 ---G-LTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       614 ---g-L~~~~~~~ly~~avG~p~~d~  635 (650)
                         | ||.+++.+++.++||||.++.
T Consensus       182 ~~~~~lp~~~~~~~~~i~lGyp~~~~  207 (224)
T 2hay_A          182 AKHNVIDLEKEGIASMLSLGYRLRDP  207 (224)
T ss_dssp             HHTTSSCTTTEEEEEEEEEECBSSCC
T ss_pred             HhcCCCCcccceEEEEEEEeccCCcc
Confidence               9 992367999999999998764

>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}

Probab=99.80  E-value=2.1e-19  Score=178.50  Aligned_cols=155  Identities=17%  Similarity=0.118  Sum_probs=107.2

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++.++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         4 m~~~~~i~~RrS~R~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~---------   55 (217)
T 2h0u_A            4 EQVVALQHQRFAAKKYDPNRRISQKDWEALVEVGRLAPSSI---------GLEPWKM----------LLLK---------   55 (217)
T ss_dssp             HHHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EECC---------
T ss_pred             hHHHHHHHHhHHHHhcCCCCCCCHHHHHHHHHHHhhCCccc---------CCCCeEE----------EEEe---------
Confidence            56889999999999999327999999999999986  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc-cccccccCceEEEEeeecchhhh----
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC-HQDIAGDGCFSLGMVAHFEPTLS----  566 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~-~Q~~~~~aa~~l~~~a~~~~~~~----  566 (650)
                           +.+.++.|.+                                  ++. +|....+|+.+++++++.+....    
T Consensus        56 -----~~~~~~~l~~----------------------------------~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~   96 (217)
T 2h0u_A           56 -----NERMKEDLKP----------------------------------MAWGALFGLEGASHFVIYLARKGVTYDSDYV   96 (217)
T ss_dssp             -----C------------------------------------------------------CCEEEEEEEESCCCTTCHHH
T ss_pred             -----CHHHHHHHHH----------------------------------HHhcChhhhcCCCEEEEEEEcCCcccchHHH
Confidence                 1222222221                                  111 45566778888888887543100    


Q ss_pred             --c------------------c------------ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHh-
Q 006333          567 --N------------------K------------NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVL-  613 (650)
Q Consensus       567 --~------------------y------------g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~L-  613 (650)
                        .                  +            +...+.....++|+++|+|+|+|+++|||+||||+|++++++++| 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~  176 (217)
T 2h0u_A           97 KKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASKQTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLE  176 (217)
T ss_dssp             HHHHHHTTCCCCCTTSHHHHHHHHHHHTTSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHH
T ss_pred             HHHHHHHhhcccchHHHHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCcCcCHHHHHHHHh
Confidence              0                  0            000123466899999999999999999999999999999999999 


Q ss_pred             --C-CCCCCceEEEEEEccccCCcC
Q 006333          614 --G-LTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       614 --g-L~~~~~~~ly~~avG~p~~d~  635 (650)
                        | |+.+++.+++.++||||.++.
T Consensus       177 ~~~~l~p~~~~~~~~i~lGy~~~~~  201 (217)
T 2h0u_A          177 EKGYLNTAEFGVSVMACFGYRNQEI  201 (217)
T ss_dssp             HHTSCCTTTEEEEEEEEEECBSSCC
T ss_pred             hcCCCCccccceEEEEEeeccCCCC
Confidence              9 843367999999999998664

>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}

Probab=99.80  E-value=9e-19  Score=170.79  Aligned_cols=160  Identities=18%  Similarity=0.133  Sum_probs=116.1

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +++.++|++|||+|+|++ ++|+.++|.+||+++.  ||+.         |.|||++          ++|.         
T Consensus         5 ~~~~~~i~~RrSiR~f~~-~~v~~e~l~~il~aa~~APs~~---------n~qpw~f----------~vv~---------   55 (190)
T 3ek3_A            5 NEVLETIKARRSVRAYDR-KQIPADDLNAILEAGAYAPSGM---------HYETWHF----------TAVC---------   55 (190)
T ss_dssp             CHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCCEE----------EEEC---------
T ss_pred             HHHHHHHHhchhhhcCCC-CCCCHHHHHHHHHHHHhCCCcC---------CCCCeEE----------EEEE---------
Confidence            468999999999999998 8999999999999997  8865         5799993          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                           +.+.++.|.+.+...+.                ..++..........++.++.+|+++++++++.+.        
T Consensus        56 -----~~~~~~~l~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~Ap~~i~~~~~~~~--------  106 (190)
T 3ek3_A           56 -----NTVKLEELNERIKGAFA----------------KSDDKHLRERGHSETYCCYYHAPTLVIVSNEPKQ--------  106 (190)
T ss_dssp             -----CHHHHHHHHHHHHHHHH----------------TCCCHHHHHHHTCSSCCTTTTCSEEEEEEECSSS--------
T ss_pred             -----CHHHHHHHHHHHHHHHH----------------hcccHHHHHHhhccccchhcCCCeEEEEEecCCC--------
Confidence                 33344455544321110                0011110011111223467789999988877532        


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc----chHH---HHhHhCCCCCCceEEEEEEccccCCc
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF----FDDP---VHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f----~dd~---v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                        .....|+|+++|||+|+|+++|||+||+|++    ++++   +++.|||++ ++.+++.++||||.++
T Consensus       107 --~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~~~~~~l~lp~-~~~~~~~l~lGyp~~~  173 (190)
T 3ek3_A          107 --WWAGMDCACAIENMFLAATSLGIASCWINQLGTTCDDPEVRAYLTSLGVPE-NHKVYGCVALGYKAEG  173 (190)
T ss_dssp             --TTHHHHHHHHHHHHHHHHHHTTCEEEEECTTTTTTTSHHHHHHHHHHTCCT-TCEEEEEEEEECBCTT
T ss_pred             --CccHhHHHHHHHHHHHHHHHCCCceEEeccchhhccChhHHHHHHHcCCCC-CcEEEEEEEEeccCCC
Confidence              3457999999999999999999999999974    4444   899999997 5799999999999875

>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}

Probab=99.80  E-value=3.4e-19  Score=177.68  Aligned_cols=151  Identities=16%  Similarity=0.167  Sum_probs=113.3

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      ..+.++|++|||+|+|++.++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus        14 ~~~~~~i~~RrSvR~f~~~~~V~~e~l~~il~aa~~APS~~---------N~Qpw~f----------~vv~---------   65 (218)
T 3bem_A           14 AEFTHLVNERRSASNFLSGHPITKEDLNEMFELVALAPSAF---------NLQHTKY----------VTVL---------   65 (218)
T ss_dssp             HHHHHHHHHCCCCSCCCSSCCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC---------
T ss_pred             HHHHHHHHhCchhhccCCCCCCCHHHHHHHHHHHHHCcCcC---------CCCCeEE----------EEEC---------
Confidence            36889999999999998327999999999999997  8865         5799983          4443         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh--h---
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL--S---  566 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~--~---  566 (650)
                           +.+.++.|.+                                  ++.+|....+++.+++++++.+...  .   
T Consensus        66 -----~~~~~~~l~~----------------------------------~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~  106 (218)
T 3bem_A           66 -----DQDVKEKLKQ----------------------------------AANGQYKVVSSSAVLLVLGDKQAYQQAADIY  106 (218)
T ss_dssp             -----CHHHHHHHHH----------------------------------TTTTCTHHHHSSEEEEEEEETTGGGGHHHHH
T ss_pred             -----CHHHHHHHHH----------------------------------hccCCCccCCCCeEEEEEecchhhhhhHHHH
Confidence                 2222222222                                  2234555667788888887754310  0   


Q ss_pred             ----c-------------------c----ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCC
Q 006333          567 ----N-------------------K----NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSK  619 (650)
Q Consensus       567 ----~-------------------y----g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~  619 (650)
                          .                   |    ..........++|+++|+|+|+|+++|||+||+|+|++++|+++|||++ +
T Consensus       107 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~  185 (218)
T 3bem_A          107 EGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLSAMMFMLSAAAAGWDTCPMIGFDAEAVKRILNIDD-Q  185 (218)
T ss_dssp             HHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-T
T ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCC-C
Confidence                0                   0    0111235678999999999999999999999999999999999999997 6


Q ss_pred             ceEEEEEEccccC
Q 006333          620 FQSLYHFTVGGPV  632 (650)
Q Consensus       620 ~~~ly~~avG~p~  632 (650)
                      +.+++.++||||+
T Consensus       186 ~~~~~~i~lGy~~  198 (218)
T 3bem_A          186 FEVVMMITIGKEK  198 (218)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             ceeEEEEEecCCc
Confidence            7899999999994

>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*

Probab=99.80  E-value=6.2e-19  Score=177.13  Aligned_cols=174  Identities=15%  Similarity=0.172  Sum_probs=122.7

Q ss_pred             CcHHHHHHhcCCCC-CCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          414 FTVREVVRKRRSAV-DMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       414 ~~l~e~I~~RRS~R-~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      +++.++|++|||+| +|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+       
T Consensus        24 ~~~~~~i~~RrSvR~~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~-------   76 (230)
T 2isk_A           24 AAVYRAIETRRDVRDEFLP-EPLSEELIARLLGAAHQAPSVG---------FMQPWNF----------VLVRQ-------   76 (230)
T ss_dssp             HHHHHHHHHCCBCSSCCCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEECC-------
T ss_pred             HHHHHHHHhhhccccccCC-CCCCHHHHHHHHHHHhhCCCCC---------CCCCeEE----------EEEcC-------
Confidence            57899999999999 9998 6999999999999986  8865         5799983          44432       


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-hccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-SNKN  569 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-~~yg  569 (650)
                             .+.++.|.+.+...    ....++      .+ .++...  ......+..+.++++.++++++..... ..|+
T Consensus        77 -------~~~~~~l~~~~~~~----~~~~~~------~~-~~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~  136 (230)
T 2isk_A           77 -------DETREKVWQAFQRA----NDEAAE------MF-SGERQA--KYRSLKLEGIRKAPLSICVTCDRTRGGAVVLG  136 (230)
T ss_dssp             -------HHHHHHHHHHHHHH----HHHHHH------TS-CHHHHH--HHHHSCCCCTTTSSEEEEEEEETTTTCSSCTT
T ss_pred             -------HHHHHHHHHHHHHH----HHHHhh------hc-CHHHHH--HHHHHhhhhhhcCCeEEEEEEecccccccccC
Confidence                   22223333321100    000000      00 111100  011123345678899998888865432 3456


Q ss_pred             cccch-HHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          570 VWMYP-RLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       570 ~~~Yr-~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      .+.++ ..++++|+++|+|+|+|+++|||+||||+|++++++++|||++ ++.+++.++||+|.++.
T Consensus       137 ~~~~~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~v~~~L~lp~-~~~~~~~i~lGy~~~~~  202 (230)
T 2isk_A          137 RTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEIKAILGIPD-HVEIVAWLCLGFVDRLY  202 (230)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHHHHHHHTEEEEECCCSCHHHHHHHHTCCT-TEEEEEEEEEEECSEEC
T ss_pred             ccccchhHHHHHHHHHHHHHHHHHHCCCceeeecccCHHHHHHHhCCCC-CceeEEEEEEeccCccc
Confidence            66654 5679999999999999999999999999999999999999997 67899999999998754

>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}

Probab=99.80  E-value=1.7e-18  Score=174.08  Aligned_cols=177  Identities=14%  Similarity=0.232  Sum_probs=120.6

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .|++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         6 ~m~~~~~i~~RRSvR~f~~-~pV~~e~l~~il~aA~~APS~~---------N~Qpw~f----------iVv~--------   57 (230)
T 3gr3_A            6 PIDIFQSILSRKSIRAFTD-QPVTQETIREILKLAARAPSGT---------NLQPWQV----------IVLT--------   57 (230)
T ss_dssp             CCBHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEC--------
T ss_pred             hhHHHHHHHhCeehhccCC-CCCCHHHHHHHHHHHHhCcCcC---------CCCCeEE----------EEEe--------
Confidence            4789999999999999998 7999999999999997  8875         5799993          4543        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccc-----------------------cccccHHHHHhhhcccccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYE-----------------------LARGDCQQLAKGLSCHQDI  547 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~-----------------------l~~gd~r~~~~~l~~~Q~~  547 (650)
                             +..++.|++.+...+.-. ...+++ +..+.                       +...|....... ...+..
T Consensus        58 -------~~~~~~l~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~  127 (230)
T 3gr3_A           58 -------GKILQKVGQELSQLVLSG-IKGERE-YHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQ-KAKNFL  127 (230)
T ss_dssp             -------HHHHHHHHHHHHHHHHTT-CCCCCS-SCCSCSSCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHH-HHHGGG
T ss_pred             -------ChHHHHHHHHHHHHHhcC-CCcccc-ccccchhhhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHH-HHhhhh
Confidence                   122334444333221111 001110 00000                       001111111111 111224


Q ss_pred             cccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccc--hHHHHhHhCCCCCCceEEEE
Q 006333          548 AGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFF--DDPVHEVLGLTGSKFQSLYH  625 (650)
Q Consensus       548 ~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~--dd~v~e~LgL~~~~~~~ly~  625 (650)
                      +.+||++|+++++.+.     +    ...+.|+|+++|||+|+|+++|||+||+|+|.  +++++++|||++ ++.+++.
T Consensus       128 ~~~AP~~i~v~~~~~~-----~----~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~  197 (230)
T 3gr3_A          128 FYGAPVGLLFTIDHDM-----E----MGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPS-DRHIICG  197 (230)
T ss_dssp             GGGCSEEEEEEEETTC-----C----THHHHHHHHHHHHHHHHHHTTTCEEEEEGGGGGGHHHHHHHHTCCT-TEEEEEE
T ss_pred             hcCCCEEEEEEecCCc-----c----chHHHHHHHHHHHHHHHHHHCCCceeeecccccchHHHHHHcCcCC-CceEEEE
Confidence            6788999888887431     1    24578999999999999999999999999987  789999999997 6799999


Q ss_pred             EEccccCCcCcc
Q 006333          626 FTVGGPVVDRRI  637 (650)
Q Consensus       626 ~avG~p~~d~r~  637 (650)
                      ++||||.++...
T Consensus       198 i~lGyp~~~~~~  209 (230)
T 3gr3_A          198 MALGYRDMNAPE  209 (230)
T ss_dssp             EEEECBCTTCGG
T ss_pred             EEEeccCCcccc
Confidence            999999887643

>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A

Probab=99.79  E-value=6.6e-19  Score=170.04  Aligned_cols=163  Identities=16%  Similarity=0.151  Sum_probs=115.7

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ .+|+.++|.+||+++.  ||++         |.|||++          ++|.+        
T Consensus         1 m~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~aPS~~---------n~qpw~~----------~vv~~--------   52 (183)
T 3bm1_A            1 MDALELLINRRSASRLAE-PAPTGEQLQNILRAGMRAPDHK---------SMQPWHF----------FVIEG--------   52 (183)
T ss_dssp             CBHHHHHHHCCCCCCEES-CCCCHHHHHHHHHHHTTSCCTT---------SCCCCEE----------EEEET--------
T ss_pred             CcHHHHHHhCcChhhcCC-CCcCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEch--------
Confidence            468899999999999997 7999999999999997  8875         5799983          44432        


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                            . .++.|.+.....+.                 ..++..  ..+...+.+..+++++++++++.+...    ..
T Consensus        53 ------~-~~~~l~~~~~~~~~-----------------~~~~~~--~~~~~~~~~~~~ap~~i~~~~~~~~~~----~~  102 (183)
T 3bm1_A           53 ------E-GRERFSAVLEQGAI-----------------AAGSDD--KAIDKARNAPFRAPLIITVVAKCEENH----KV  102 (183)
T ss_dssp             ------H-HHHHHHHHHHHHHH-----------------HHTCCH--HHHHHHHHGGGGSSEEEEEEECCCSCS----SS
T ss_pred             ------h-HHHHHHHHHHHHHh-----------------ccCCCH--HHHHHHHhhhccCCEEEEEEEecCCCC----CC
Confidence                  1 23334432211000                 000000  001112345678898888888754311    12


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      .++..++++|+++|+|+|+|+++|||+||+++|  ++++++++|||++ ++.+++.++||+|.++.
T Consensus       103 ~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~~Gy~~~~~  167 (183)
T 3bm1_A          103 PRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREAFGCRE-QDKIVGFLYLGTPQLKA  167 (183)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHHHTTCCT-TCEEEEEEEEEEECC--
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHHHhCCCC-CCEEEEEEEeecCCCCC
Confidence            344567899999999999999999999999988  4789999999997 57899999999998653

>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*

Probab=99.79  E-value=2.4e-19  Score=177.68  Aligned_cols=157  Identities=18%  Similarity=0.158  Sum_probs=114.9

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++.++|+.++|.+||+++.  ||++         |.|||++          ++|.         
T Consensus         1 m~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~~----------~vv~---------   52 (217)
T 1icr_A            1 MDIISVALKRHSTKAFDASKKLTPEQAEQIKTLLQYSPSST---------NSQPWHF----------IVAS---------   52 (217)
T ss_dssp             -CHHHHHHHCCBCSCBCTTCCCCHHHHHHHHHHHHHCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             CcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHCcccc---------CCCCeEE----------EEeC---------
Confidence            46889999999999999327999999999999996  8875         5799983          4543         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh---h--
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL---S--  566 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~---~--  566 (650)
                           +.+.++.|.+.+                      .+.       ...+|.+..+++.+++++++.+...   .  
T Consensus        53 -----~~e~~~~l~~~~----------------------~~~-------~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~   98 (217)
T 1icr_A           53 -----TEEGKARVAKSA----------------------AGN-------YVFNERKMLDASHVVVFCAKTAMDDVWLKLV   98 (217)
T ss_dssp             -----SHHHHHHHHTTS----------------------CGG-------GGGGHHHHHHSSEEEEEEEESSCCHHHHHHH
T ss_pred             -----CHHHHHHHHHHh----------------------hhh-------hhcChhhhcCCCeEEEEEeCCccchHHHHHH
Confidence                 223333333211                      000       1124566677888888888754210   0  


Q ss_pred             -----ccc--------------------------cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCC
Q 006333          567 -----NKN--------------------------VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGL  615 (650)
Q Consensus       567 -----~yg--------------------------~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL  615 (650)
                           +.|                          ...+.....++|+++|+|+|+|+++|||+||||+|++++++++|||
T Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~l  178 (217)
T 1icr_A           99 VDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGL  178 (217)
T ss_dssp             HHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHHTH
T ss_pred             HHHHHhhccCCHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCC
Confidence                 001                          1122345679999999999999999999999999999999999999


Q ss_pred             C-CCCceEEEEEEccccCC
Q 006333          616 T-GSKFQSLYHFTVGGPVV  633 (650)
Q Consensus       616 ~-~~~~~~ly~~avG~p~~  633 (650)
                      + + ++.+++.++||||.+
T Consensus       179 p~~-~~~~~~~i~lGy~~~  196 (217)
T 1icr_A          179 KEK-GYTSLVVVPVGHHSV  196 (217)
T ss_dssp             HHH-TEEEEEEEEEECBCT
T ss_pred             Ccc-CCceEEEEEeccCCc
Confidence            8 6 578999999999974

>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}

Probab=99.78  E-value=1.3e-18  Score=169.24  Aligned_cols=162  Identities=15%  Similarity=0.123  Sum_probs=116.5

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+       
T Consensus         7 ~m~~~~~i~~RrS~R~f~~-~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~~-------   59 (189)
T 2i7h_A            7 YTSIANVIKERRSVRTFTD-KAVEKDLLIELLNDATWAPNHK---------HREPWNC----------KLYIG-------   59 (189)
T ss_dssp             CCCHHHHHHHCCBCCCCCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEEG-------
T ss_pred             HHHHHHHHHhcccHhhhCC-CCcCHHHHHHHHHHHHhCCCCC---------CcCCeEE----------EEECc-------
Confidence            3679999999999999998 7999999999999997  8865         5799983          44432       


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                             . .++.|.+.+...+                 ...+...   .....+.++.++++.++++++.+..  +   
T Consensus        60 -------~-~~~~l~~~~~~~~-----------------~~~~~~~---~~~~~~~~~~~ap~~i~~~~~~~~~--~---  106 (189)
T 2i7h_A           60 -------E-GRKKLVDAVLNSF-----------------TEEERAK---RGKILSDRFLSTPAQIVVYMNEDPR--Q---  106 (189)
T ss_dssp             -------G-GHHHHHHHHHHTS-----------------CHHHHHH---HHHHHHHHHHTSSEEEEEEEECCSS--H---
T ss_pred             -------H-HHHHHHHHHHHHH-----------------hccCchH---HHHHHHhHHhcCCEEEEEEEecCCC--C---
Confidence                   2 2344444322100                 0000000   0011244667889888888875421  1   


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCc-c-chHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGC-F-FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~-f-~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ..+...+.++|+++|+|+|+|+++|||+||+|+ | ++++++++|||++ ++.+++.++||||.++.
T Consensus       107 ~~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~  172 (189)
T 2i7h_A          107 IQRDEDYAATCAFMQNFQLLAWERGLGCVWKSGGLNYNPLFIEGIGLTR-GQRIVGILHIGYFDKAP  172 (189)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECSGGGGCHHHHHHTTCCT-TEEEEEEEEEEECSSCC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHCCCeeEEecCCccCCHHHHHHhCcCC-CCeEEEEEEEeCCCCCC
Confidence            123345688999999999999999999999986 5 5689999999997 67899999999998653

>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}

Probab=99.78  E-value=2.6e-18  Score=170.64  Aligned_cols=158  Identities=20%  Similarity=0.245  Sum_probs=115.6

Q ss_pred             CCcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          413 GFTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      .+++.++|++|||+|+|++ . +|+.++|.+||+++.  ||++         |.|||++          ++|.+      
T Consensus        12 ~m~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~APS~~---------n~qpw~f----------~vv~~------   65 (210)
T 2r01_A           12 IMKLRELVARSRSIRRFDE-HVAVNDATLRDLVELVCYTPSAA---------NRQLLRF----------LPVTG------   65 (210)
T ss_dssp             --CHHHHHHHCCBCCCBCT-TSCCCHHHHHHHHHHHTTSCCGG---------GCCCCEE----------EEEEH------
T ss_pred             cCcHHHHHHhCceeeccCC-CCCCCHHHHHHHHHHHHhCCCCC---------CCCCEEE----------EEEEC------
Confidence            3689999999999999998 6 999999999999997  8865         5799983          44432      


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCc-eEEEEeeecchhhhcc
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGC-FSLGMVAHFEPTLSNK  568 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa-~~l~~~a~~~~~~~~y  568 (650)
                              .+.+    +.+.....|...           +           -...|.+..+++ ++|+++++.+..    
T Consensus        66 --------~~~~----~~l~~~~~~~~~-----------~-----------~~~~~~~~~~ap~~~ivv~~~~~~~----  107 (210)
T 2r01_A           66 --------ADMS----DKVFPCLKWAGY-----------L-----------EDWPGPEPGERPAAALVMLCRNEDL----  107 (210)
T ss_dssp             --------HHHH----HTTGGGBCCCTT-----------C-----------TTCCSCCTTSSCSEEEEEEEEGGGG----
T ss_pred             --------HHHH----HHHHHHHhhhhh-----------h-----------hhhcccchhcCCcEEEEEEecCccC----
Confidence                    1111    111111112110           0           011345566776 677777775421    


Q ss_pred             ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCccccC
Q 006333          569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSL  640 (650)
Q Consensus       569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~~~  640 (650)
                           ...++++|+++|+|+|+|+++|||+||+|+|++++++++|||++ ++.+++.++||+|.++......
T Consensus       108 -----~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~~~~~~  173 (210)
T 2r01_A          108 -----PGAACDSGIAAQTIMLGAAEKELGGCIVAAIDRERLMASLGIPD-AWTVLLVIALGKPAETVVIDQI  173 (210)
T ss_dssp             -----GGTHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TEEEEEEEEEECBCSCEEEEEE
T ss_pred             -----cchHHHHHHHHHHHHHHHHHCCCCEeeEcccCHHHHHHHcCcCC-CceEEEEEEEeCCCCCCCcCCC
Confidence                 23479999999999999999999999999999999999999997 6789999999999887765443

>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*

Probab=99.78  E-value=2.4e-18  Score=176.44  Aligned_cols=177  Identities=14%  Similarity=0.110  Sum_probs=118.9

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++ .+|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus        54 ~~~~~e~i~~RRSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------ivv~--------  105 (259)
T 3gb5_A           54 SQEFYELLNKRRSVRFISS-EHVPMEVIENVIKAAGTAPSGA---------HTEPWTF----------VVVK--------  105 (259)
T ss_dssp             HHHHHHHHHTCCCCSCBCC-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEC--------
T ss_pred             hHHHHHHHHHCcchhhcCC-CCCCHHHHHHHHHHHHHCCCcC---------CCCCeEE----------EEEe--------
Confidence            3678999999999999997 8999999999999997  8865         5799993          4544        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccccc-HHHHHhh--hcccccccccCceEEEEeeecchhhhc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGD-CQQLAKG--LSCHQDIAGDGCFSLGMVAHFEPTLSN  567 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd-~r~~~~~--l~~~Q~~~~~aa~~l~~~a~~~~~~~~  567 (650)
                            +.+.+++|.+.+....  +.        . +.-..|+ .......  ....+.++.+|+++|+++++..... .
T Consensus       106 ------~~~~~~~l~~~~~~~~--~~--------~-~~~~~g~~~~~~l~~~~~~~~~~~~~~AP~lIvv~~~~~~~~-~  167 (259)
T 3gb5_A          106 ------DPDMKHKIREIIEEEE--EI--------N-YMKRMGKRWVTDLKKLRTNWIKEYLDTAPVLILIFKQVHGFA-A  167 (259)
T ss_dssp             ------CHHHHHHHHHHHHHTC--CC-------------------------------CTHHHHSSEEEEEEEEC------
T ss_pred             ------CHHHHHHHHHHHHhhh--hh--------h-hhhhcchhhHHHHHHHHHHHhhHHhcCCCEEEEEEEeccccc-c
Confidence                  3344455555432110  00        0 0000010 0000000  1123566778999999998864322 1


Q ss_pred             cccc-cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-HHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          568 KNVW-MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD-DPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       568 yg~~-~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-d~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                      .|.. ...+..+++|+++|+|+|+|+++|||+|++|+|+. ++|+++|||++ ++.+++.++||||.++..
T Consensus       168 ~g~~~~~~~~~~dagiA~~nllLAA~alGLGs~~~g~~~~~~~vr~~LglPe-~~~~v~~iaiGyp~e~~~  237 (259)
T 3gb5_A          168 NGKKKVHYYNEISVSIACGLLLAALQNAGLVTVTTTPLNCGPRLRVLLGRPS-HEKLLVLLPVGYPSRDAT  237 (259)
T ss_dssp             --------CHHHHHHHHHHHHHHHHHHTTCBCCCBCCGGGHHHHHHHTTCCT-TEEEEEEEEEBCBCTTCC
T ss_pred             cCcccchhHHHHHHHHHHHHHHHHHHHCCCeEEEecCcCcHHHHHHhcCcCC-CCEEEEEEEecCcCCCCC
Confidence            1221 12245689999999999999999999999999986 79999999998 679999999999988764

>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1

Probab=99.77  E-value=1.4e-18  Score=171.39  Aligned_cols=166  Identities=11%  Similarity=0.075  Sum_probs=114.0

Q ss_pred             CcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          414 FTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      +++.++|++|||+|+|++ + +|+.++|.+||+++ .  ||++         |.|||++          ++|.+      
T Consensus         2 ~~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~~APS~~---------n~Qpw~f----------~vv~~------   55 (208)
T 2ifa_A            2 SNFLDLQKQRRSIYALGK-TVDLSKAELVALIQNAIKQAPSAF---------NSQTSRA----------LVLFG------   55 (208)
T ss_dssp             CCHHHHHHHCCCCCCEES-CCSSCHHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEEH------
T ss_pred             chHHHHHHhhhhHhccCC-CCCCCHHHHHHHHHHHHhcCCCcc---------ccCCeEE----------EEEEC------
Confidence            368899999999999998 6 99999999999998 5  8865         5799983          45442      


Q ss_pred             eeeeecCCcchhhHHH----HHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh
Q 006333          490 GLYFLVRNEDHLGELK----KAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL  565 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~----~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~  565 (650)
                              ++.++.+.    +.+...                 .....+......    .....+++..++++++.+...
T Consensus        56 --------~~~~~~~~~~~~~~l~~~-----------------~~~~~~~~~~~~----~~~~~~a~~~i~~~~~~~~~~  106 (208)
T 2ifa_A           56 --------QDSQDFWNKIAYSELEKV-----------------TPAEAFAGTKAK----LESFAAGVGTILLFEDQAVVR  106 (208)
T ss_dssp             --------HHHHHHHHTHHHHHHHTT-----------------SCHHHHHHHHHH----HHHHHTSSEEEEEEEEHHHHH
T ss_pred             --------HHHHHHHHHHHHHHHhhc-----------------CChhhhhhhhHH----HHHHhhcceEEEEEecHHHHH
Confidence                    22111111    011100                 000111100000    012456788888887754311


Q ss_pred             ------hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          566 ------SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       566 ------~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                            ..|++........++|+++|+|+|+|+++|||+||++  +|++++|+++||||+ ++.+++.++||+|.++.
T Consensus       107 ~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~v~~~l~lp~-~~~~~~~i~lGy~~~~~  183 (208)
T 2ifa_A          107 NLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEKYDLPT-NWKMRAQIPFGSIEAPA  183 (208)
T ss_dssp             HHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEESSCC
T ss_pred             HHHHhCcccccccchhHHHHHHHHHHHHHHHHHHCCCccchhcccccchHHHHHHcCCCc-cceEEEEEEeeccCCCC
Confidence                  1233333355679999999999999999999999887  678899999999997 67999999999998764

>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1

Probab=99.75  E-value=1.5e-17  Score=162.56  Aligned_cols=169  Identities=14%  Similarity=0.132  Sum_probs=111.5

Q ss_pred             CCcHHHHHHhcCCCCCCCCCC-CCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCC
Q 006333          413 GFTVREVVRKRRSAVDMDGVT-AIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPK  489 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~-~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~  489 (650)
                      .+++.++|++|||+|+|++ + +|+.++|.+||+++.  ||++         |.|||++          ++|.+      
T Consensus         5 ~m~~~~~i~~RrSvR~f~~-~~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~------   58 (200)
T 1ywq_A            5 TTNLKEAIVNRRSIRKVTK-NDAITKERIEEVLKTALHAPTSF---------NMQSGRM----------VVLMD------   58 (200)
T ss_dssp             TSCHHHHHHHCCCCCCEEC-CTTSCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEEEH------
T ss_pred             HHHHHHHHHhhhhHHhhCC-CCCCCHHHHHHHHHHHHhCCCCC---------CCCCeEE----------EEEeC------
Confidence            4689999999999999998 6 999999999999997  8865         5799983          45542      


Q ss_pred             eeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccc-cHHHHHhhhcccccccccCceEEEEeeecchhh---
Q 006333          490 GLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARG-DCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL---  565 (650)
Q Consensus       490 GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~g-d~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~---  565 (650)
                              ++ +..|...+...              +..+..+ .+......   .+. ..+++..++++++.....   
T Consensus        59 --------~~-~~~l~~~~~~~--------------~~~~~~~~~~~~~~~~---~~~-~~~~~~~i~~~~~~~~~~~~~  111 (200)
T 1ywq_A           59 --------GE-HEKFWDIVKET--------------LRARVPAENFEATVER---LKG-FHAGVGTVLFFEDQATVEKMQ  111 (200)
T ss_dssp             --------HH-HHHHHHHHHHH--------------HHHHSCHHHHHHHHGG---GHH-HHTSSEEEEEEEEHHHHHHHH
T ss_pred             --------HH-HHHHHHHHHHH--------------HHhcCChhhhhhhHHH---HHH-HhhcceEEEEecCchHHHHHH
Confidence                    11 11111111000              0000001 11110011   111 223455555555543211   


Q ss_pred             ---hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          566 ---SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       566 ---~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                         ..++.........++|+++|+|+|+|+++|||+|+++  +|++++++++|||++ ++.+++.++||||.++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGy~~~~~  185 (200)
T 1ywq_A          112 ENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVDAEVKETWNIPA-EWSLVGQMPFGEPNEQP  185 (200)
T ss_dssp             HHCGGGTTTHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEECSCC
T ss_pred             HhCccccccccchHHHhhHHHHHHHHHHHHHCCCccchhhcccccHHHHHHHhCCCC-CceEEEEEEeeccCCCC
Confidence               1122333345678999999999999999999999866  788899999999997 67899999999998764

>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}

Probab=99.75  E-value=1.1e-17  Score=163.67  Aligned_cols=169  Identities=9%  Similarity=0.062  Sum_probs=110.1

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      ++.++|++|||+|+|+++.+ +.++|.+||+++ .  ||++         |.|||++          ++|.+        
T Consensus         2 ~~~~~i~~RrSvR~f~~~~~-~~e~l~~il~aa~~~APS~~---------n~Qpw~f----------~vv~~--------   53 (202)
T 2wqf_A            2 SFIKSLENRRTIYALGRNVQ-DEEKVIETIKEAVRFSPTAF---------NSQTGRL----------LILTG--------   53 (202)
T ss_dssp             CHHHHHHHCCBCCCEECCCS-CHHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEEH--------
T ss_pred             hHHHHHHhhhhHHhcCCCCC-CHHHHHHHHHHHHHhCCCcc---------CCCCeEE----------EEEEC--------
Confidence            57899999999999998338 999999999988 5  8865         5799993          55542        


Q ss_pred             eeecCCcchhhHHHH-----HhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-
Q 006333          492 YFLVRNEDHLGELKK-----AVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-  565 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~-----~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-  565 (650)
                            ++ +..|.+     .+.. ..+...           +....+.....    .+....+++..++++++..... 
T Consensus        54 ------~~-~~~l~~~~~~~~~~~-~~~~~~-----------~~~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~  110 (202)
T 2wqf_A           54 ------DA-QDKLWDEIVAPELKA-AMEAQG-----------VPESAWDNTRA----KLDGFKAAFGTILFFEDQAVVKN  110 (202)
T ss_dssp             ------HH-HHHHHHHTHHHHHHH-HHHC-----------------------C----HHHHHHTSSEEEEEEEEHHHHHH
T ss_pred             ------hH-HHHHHHHHHHHHHhh-cccccc-----------CCHHHHHhhHH----HHHHHHhcCCeEEEEeCchHHHH
Confidence                  11 111221     1100 000000           00000000000    0011234565666665543221 


Q ss_pred             -----hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          566 -----SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       566 -----~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                           ..|+...++....++|+++|||+|+|+++|||+||++  +|++++++++|||++ ++.+++.++||+|.++.
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~-~~~~~~~i~lGyp~~~~  186 (202)
T 2wqf_A          111 LQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQHYNPLIDEAVAKEWNLPE-SWKLRGQLVFGSIEAPA  186 (202)
T ss_dssp             HHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEECCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEECSCC
T ss_pred             HHhhccchhhcchhhhHHHHHHHHHHHHHHHHHCCCccchhhcCcccHHHHHHHhCcCc-cceEEEEEEecCCCCCC
Confidence                 1233444456788999999999999999999999998  688999999999997 67999999999998764

>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*

Probab=99.73  E-value=5.5e-17  Score=162.76  Aligned_cols=173  Identities=18%  Similarity=0.178  Sum_probs=115.3

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .+++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+       
T Consensus        16 ~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~~APS~~---------n~Qpw~f----------~vv~~-------   68 (235)
T 2wzv_A           16 AQAAERLIKGRRAVRAFRP-DEVPEETMRAVFELAGHAPSNS---------NTQPWHV----------EVVSG-------   68 (235)
T ss_dssp             HHHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCCEE----------EEECH-------
T ss_pred             HHHHHHHHHhCceecCCCC-CCCCHHHHHHHHHHHHhCCccc---------CCCCcEE----------EEecC-------
Confidence            3578999999999999998 7999999999999997  8865         5799983          45432       


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccc-ccccHHH----------------------HHhhhccccc-
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYEL-ARGDCQQ----------------------LAKGLSCHQD-  546 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l-~~gd~r~----------------------~~~~l~~~Q~-  546 (650)
                             .+ ++.|.+.+... .|.+.. ++. +..+.- ..+.+..                      ....  ..+. 
T Consensus        69 -------~~-~~~l~~~~~~~-~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  135 (235)
T 2wzv_A           69 -------AA-RDRLAEALVTA-HAEERV-TVD-FPYREGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGY--NTESL  135 (235)
T ss_dssp             -------HH-HHHHHHHHHHH-HHTTCC-BCS-SCCCTTSSCHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH--HHHHH
T ss_pred             -------HH-HHHHHHHHHHH-HHhccc-Ccc-ccccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHH--Hhhcc
Confidence                   22 34444433211 111110 111 100000 0011110                      0000  0111 


Q ss_pred             ccccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEE
Q 006333          547 IAGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLY  624 (650)
Q Consensus       547 ~~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly  624 (650)
                      .+.+++++++++++.+.         ....+.++|+++|||+|+|+++|||+||||+|  ++++++++||| + ++.+++
T Consensus       136 ~~~~ap~~i~~~~~~~~---------~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~~~v~~~L~l-~-~~~~~~  204 (235)
T 2wzv_A          136 RFYGAPHVAMLFAPNNT---------EARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAELGV-E-NRKLLM  204 (235)
T ss_dssp             TGGGCSEEEEEEEETTC---------CHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGBHHHHHHHHTC-C-SEEEEE
T ss_pred             eecCCCEEEEEecCccc---------ccccHHHHHHHHHHHHHHHHHCCCccchhhhhccchHHHHHHcCC-C-CcceEE
Confidence            24568887777766321         23567999999999999999999999999986  67889999999 6 678999


Q ss_pred             EEEccccCCcCc
Q 006333          625 HFTVGGPVVDRR  636 (650)
Q Consensus       625 ~~avG~p~~d~r  636 (650)
                      .++||||.++..
T Consensus       205 ~i~lGy~~~~~~  216 (235)
T 2wzv_A          205 GISFGYADDTAA  216 (235)
T ss_dssp             EEEEECBCTTCG
T ss_pred             EEEecCCCCccc
Confidence            999999987654

>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}

Probab=99.71  E-value=8.9e-16  Score=162.75  Aligned_cols=74  Identities=9%  Similarity=-0.003  Sum_probs=61.0

Q ss_pred             cccCceEEEEeeecchhhhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch-----HHHHhHhCCCCCCceE
Q 006333          548 AGDGCFSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD-----DPVHEVLGLTGSKFQS  622 (650)
Q Consensus       548 ~~~aa~~l~~~a~~~~~~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d-----d~v~e~LgL~~~~~~~  622 (650)
                      ..+++.+++++.+.+          -+..++++|++.|+++|+|+++||++||++.+..     +.|+++||+++   .+
T Consensus       230 ~~~ap~~~vl~~~~d----------~~~~~~d~G~a~q~~lLaAt~~GL~t~~~~~~~e~~~~~~~vr~~lg~p~---~~  296 (330)
T 2ymv_A          230 NNDAATIVVLSTDGY----------SREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDA---CP  296 (330)
T ss_dssp             SSCCCEEEEEEESCC----------SHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGSSHHHHHHHHTTSSTTC---EE
T ss_pred             ccCCCeEEEEEeCCC----------CHHHHHHHHHHHHHHHHHHHHCChhhccchhhhhhhHHHHHHHHHhCCCC---ce
Confidence            457777777766532          1355799999999999999999999999998654     78999999985   48


Q ss_pred             EEEEEccccCCc
Q 006333          623 LYHFTVGGPVVD  634 (650)
Q Consensus       623 ly~~avG~p~~d  634 (650)
                      ++.+.|||+.++
T Consensus       297 ~~~i~lGy~~~~  308 (330)
T 2ymv_A          297 QVLVRIGLAPAL  308 (330)
T ss_dssp             EEEEEEEBCCTT
T ss_pred             EEEEEeecCCCC
Confidence            999999999875

>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1

Probab=99.63  E-value=4.8e-16  Score=152.94  Aligned_cols=136  Identities=15%  Similarity=0.077  Sum_probs=104.8

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||++||+....+.+.                .+..
T Consensus        25 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~~----------------~l~~   72 (200)
T 2fre_A           25 AFDGSPMPKEHLLTILDA----------------AHWAPSASNHQPWRFVYAHKDSEDWP----------------LFVE   72 (200)
T ss_dssp             CBCCCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEEETTSTTHH----------------HHHH
T ss_pred             ccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCEEEEEEeCcHHHHH----------------HHHH
Confidence            467889999999999998                58899999999999998876523221                1111


Q ss_pred             -CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          225 -IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       225 -~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                       ....   .+.++.+||++|+++++..+....+..+.+++..+|+|+++||++|+|+++|||+|++++|+++.++++|||
T Consensus        73 ~~~~~---~~~~~~~ap~~iv~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~l~l  149 (200)
T 2fre_A           73 LLMEG---NQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDI  149 (200)
T ss_dssp             TBCHH---HHHHHTTSSEEEEEEEESEEECTTCCEEECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHTTC
T ss_pred             HHHhh---hhHHHhcCCEEEEEEEecccccCcccccccchhhHHHHHHHHHHHHHHHHCCcceeeEcccCHHHHHHHcCC
Confidence             1000   123467899999999986542111223456788999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +. .+.++++++|
T Consensus       150 p~-~~~~~~~i~l  161 (200)
T 2fre_A          150 PD-GFKVEAGVAI  161 (200)
T ss_dssp             CT-TEEEEEEEEE
T ss_pred             CC-CceEEEEEEE
Confidence            85 4678888888

>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}

Probab=99.60  E-value=2.2e-15  Score=148.34  Aligned_cols=131  Identities=15%  Similarity=0.159  Sum_probs=104.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.++|.+||+.                .|.+||++|++||+++|+... +.+                ..+.
T Consensus        41 R~f~~~~V~~e~l~~il~a----------------a~~APS~~n~Qpwrf~vv~~~-e~~----------------~~l~   87 (198)
T 3ge5_A           41 RKFIDRPVEEEKLMAILEA----------------GRIAPSAHNYQPWHFLVVREE-EGR----------------KRLA   87 (198)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHHCCCGGGCCCEEEEEECSH-HHH----------------HHHG
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHHCCCcCCCCCEEEEEEECH-HHH----------------HHHH
Confidence            3467899999999999998                588999999999999887653 111                1121


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                      +.-     .+.++.+||++|+++++..+. |+.  +++++..+|+|+++||++|+|+++|||+||+++|+++.++++|||
T Consensus        88 ~~~-----~~~~~~~Ap~~ivv~~~~~~~-~~~--~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~l  159 (198)
T 3ge5_A           88 PCS-----QQPWFPGAPIYIITLGDHQRA-WKR--GAGDSVDIDTSIAMTYMMLEAHSLGLGCTWVCAFDQALCSEIFDI  159 (198)
T ss_dssp             GGC-----CCTTGGGCSEEEEEEEETTTS-CEE--TTEESHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTC
T ss_pred             HHh-----CcccccCCCEEEEEEEecccc-ccc--ccccchHHHHHHHHHHHHHHHHHCCCCEEEECccCHHHHHHHhCc
Confidence            110     124567999999999986543 222  567788999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +. .+.++++++|
T Consensus       160 p~-~~~~~~~i~i  171 (198)
T 3ge5_A          160 PS-HMTPVSILAL  171 (198)
T ss_dssp             CT-TEEEEEEEEE
T ss_pred             CC-CceEEEEEEE
Confidence            87 4678888888

>3g14_A Nitroreductase family protein; structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: MSE; 1.75A {Clostridium novyi}

Probab=99.60  E-value=9.2e-16  Score=150.19  Aligned_cols=135  Identities=10%  Similarity=0.025  Sum_probs=104.6

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+.                .+.+
T Consensus        16 ~f~~~~v~~e~l~~il~a----------------a~~aPS~~n~qpw~~~vv~~~-~~~~----------------~l~~   62 (193)
T 3g14_A           16 KFEQTAIDRDKLLKIIDM----------------AMRAPSWKNKTPYKFIVVESD-KLKL----------------DIAN   62 (193)
T ss_dssp             CBCCCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HHHH----------------HHHH
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHHCcCccCCCCeEEEEEeCH-HHHH----------------HHHH
Confidence            467889999999999998                578999999999999887653 1111                1111


Q ss_pred             CCc-hhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCC
Q 006333          225 IPS-RFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGL  303 (650)
Q Consensus       225 ~~~-~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgL  303 (650)
                      .-. .....+.++.+||++|+++++..+...+|+   .++..+|+|+++||++|+|+++|||+||+++|+++.++++|||
T Consensus        63 ~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~~~~~~v~~~l~l  139 (193)
T 3g14_A           63 AIENKTSAASEAVLNSPMTIVAVANPEESGDVSG---KEIYLIDTAIAMEHIVLGATDEGYGTCWIAAFNENKIKEALKI  139 (193)
T ss_dssp             HBCCSSSHHHHHHHHSSEEEEEEECHHHHCEETT---EEHHHHHHHHHHHHHHHHHHHTTCBBCCBCCBCHHHHHHHHTC
T ss_pred             HHhhccccchhhhcCCCEEEEEEEeCcccccccc---ccchHhhHHHHHHHHHHHHHHCCCCEEEEcccCHHHHHHHhCc
Confidence            000 000012346789999999999776654444   3678999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccc
Q 006333          304 DIFPEFVIPSKPI  316 (650)
Q Consensus       304 d~~~E~v~~~~~i  316 (650)
                      +.. +.++++++|
T Consensus       140 p~~-~~~~~~i~l  151 (193)
T 3g14_A          140 PDN-LRVVALTPL  151 (193)
T ss_dssp             CTT-SEEEEEEEE
T ss_pred             CCC-ceEEEEEEE
Confidence            864 578888888

>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0

Probab=99.58  E-value=4.5e-15  Score=146.92  Aligned_cols=145  Identities=13%  Similarity=0.107  Sum_probs=106.1

Q ss_pred             chhhhhccC----CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333          136 PLYSSLFTS----LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA  210 (650)
Q Consensus       136 ~~~~~l~~~----~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY  210 (650)
                      .+.+.+..|    .+.+ ++|+.++|.+||+.                .|.+||++|+|||+++|+... +.        
T Consensus         9 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~ilea----------------a~~APS~~N~Qpw~f~vv~~~-~~--------   63 (212)
T 3ge6_A            9 DFMEIVKGRRSIRNYDTNVKISKEEMTQILEE----------------ATLAPSSVNMQPWRFLVIDSE-EG--------   63 (212)
T ss_dssp             BHHHHHHTCCBCCCBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECSH-HH--------
T ss_pred             HHHHHHHhhHhHHhcCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCEEEEEEeCH-HH--------
Confidence            445555543    4666 69999999999998                589999999999999887653 11        


Q ss_pred             EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHH---Hhhhc-----------------------------
Q 006333          211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREA---WKYGE-----------------------------  258 (650)
Q Consensus       211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~---~KYg~-----------------------------  258 (650)
                              ++.+.+...   ..+..+.+|+++|+++++..+..   ..|+.                             
T Consensus        64 --------~~~l~~~~~---~~~~~~~~a~~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (212)
T 3ge6_A           64 --------KATLAPLAK---FNQVQVETSSAVIAVFGDMKAIDQLENIYDTAVEKGLMPQEVRDRQVPAIQGMYENVPAS  132 (212)
T ss_dssp             --------HHHHGGGST---TCHHHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSCHH
T ss_pred             --------HHHHHhhcc---cCcccccCCCEEEEEEeCCchhhhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCCHH
Confidence                    112222110   01234567899999998865321   00110                             


Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          259 RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       259 rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ....+..+|+|+++||++|+|+++||++|++++|+.+.++++||||++.+.++++++|
T Consensus       133 ~~~~~~~~d~g~a~~nl~LaA~~~Glgsc~i~~~~~~~v~~~L~l~p~~~~~~~~ial  190 (212)
T 3ge6_A          133 ALKDSILIDSGLVSMQLMLVARAHGYDTNPIGGYEKDQIAEAFGMEKDRYVPVMLLSI  190 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHTTCCSSSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCCCceEEEEEEE
Confidence            1123678999999999999999999999999999999999999996666788888888

>4dn2_A Nitroreductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgrc; HET: FMN; 1.50A {Geobacter metallireducens} PDB: 4g8s_A*

Probab=99.58  E-value=2.2e-15  Score=149.24  Aligned_cols=154  Identities=14%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      .+.+.+..|    .+.+++|+.++|.+||+.                .|.+||++|+|||++||+... +.+.   .+..
T Consensus        24 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~~---~l~~   83 (208)
T 4dn2_A           24 ETLEAIRTRRSVRKFSDRPVEPEKLRAVLDA----------------ARLAPSWANMQCWRFVVVEDQ-ATKV---QISE   83 (208)
T ss_dssp             BHHHHHHHCCBCCCBCCCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHHH---HHHH
T ss_pred             hHHHHHHhCccccCCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCEEEEEEECH-HHHH---HHHH
Confidence            455555543    467899999999999998                588999999999999987653 1111   0111


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                      ..-.+ .+.  ..........+..+.+||++|+++++..+...+++   .++..+|+|+++||++|+|+++|||+||+++
T Consensus        84 ~~~~~-~~~--~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~---~~~~~~d~g~a~~nl~LaA~~~Glgs~~~g~  157 (208)
T 4dn2_A           84 LSYVE-AYF--GPKGYKSNPAQKALAEAPVVIIACGEPPQSGELRG---QQYYLTDVGIAAQNLMLAAHDLGLGSVFVGV  157 (208)
T ss_dssp             TCCCC-TTC--CCTTCSSCTTHHHHHHSSEEEEEEECGGGSCEETT---EETHHHHHHHHHHHHHHHHHHTTCEECCBCC
T ss_pred             hhhhh-hhh--hhccccccchhhhhcCCCEEEEEEEeccccccccc---ccchHHHHHHHHHHHHHHHHHCCCCEEEEcc
Confidence            00000 000  00000000012346689999999998765533333   3678899999999999999999999999999


Q ss_pred             cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++.++++|||+.. +.++++++|
T Consensus       158 ~~~~~v~~~L~lp~~-~~~~~~i~l  181 (208)
T 4dn2_A          158 FDEQQLGELLGIPAE-LRIVGLFPL  181 (208)
T ss_dssp             CCHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred             cCHHHHHHHhCcCCC-ceEEEEEEE
Confidence            999999999999864 678888888

>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}

Probab=99.58  E-value=1.2e-15  Score=149.19  Aligned_cols=151  Identities=15%  Similarity=0.099  Sum_probs=104.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCcc-cc----CCCCeeeEecCCCCc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIE-SL----CDSPFVAHYAPKEHA  218 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~-gL----~~~pGvYhY~p~~h~  218 (650)
                      |.+.+++|+.++|.+||+.                .|.+||++|+|||++||+...-. .+    ..  +++.+.+....
T Consensus        14 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~~~~~l~~~~~~--~~~~~~~~~~~   75 (198)
T 3gfa_A           14 RKYKNQSISHETIEKIIEA----------------GINAPSSKNRQPWRFVVITEKEKESMLKAMSK--GIQNEINDNGL   75 (198)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECTTTHHHHHHHHHH--HHHHHHTTCSS
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeChHHHHHHHHHHH--HHhhccccccc
Confidence            3467899999999999998                58899999999999998875410 00    11  22222211111


Q ss_pred             hhhhccCCchhcc-ccccCCCCcEEEEEeeechhHHHhh----hchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe--cc
Q 006333          219 LELRAKIPSRFDL-FNNFFPKNSFLVGFSSIFWREAWKY----GERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL--EG  291 (650)
Q Consensus       219 L~~l~~~~~~~~~-~~~~~~~a~~~iv~ta~~~r~~~KY----g~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i--~~  291 (650)
                      +...... ..... .+.++.+||++|+++++..+..+++    ......+..+|+|+++||++|+|+++|||+||+  +.
T Consensus        76 ~~~~~~~-~~~~~~~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~  154 (198)
T 3gfa_A           76 LPGSRQH-IAGANYTVEIMKQAPVTIFILNILGKSPLEKLSPEERFYEMANMQSIGAAIQNMSLTAVELGLGSLWICDVY  154 (198)
T ss_dssp             CGGGGGG-HHHHHHHHHHHHHSSEEEEEEETTCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGG
T ss_pred             ChhhHHH-HHHHHHHhhhhhCCCEEEEEEEcCcccchhhccccccccchhhHHHHHHHHHHHHHHHHHCCCeeeeecCcc
Confidence            1000000 00000 0234668999999999876544432    112235678999999999999999999999999  88


Q ss_pred             cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++.++++|||+..   ++++++|
T Consensus       155 ~~~~~v~~~l~lp~~---~~~~i~l  176 (198)
T 3gfa_A          155 FAYRELCEWLNTDSQ---LVAAISL  176 (198)
T ss_dssp             GGHHHHHHHHTCSSE---EEEEEEE
T ss_pred             cCcHHHHHHhCCCcc---eEEEEEE
Confidence            999999999999864   8888888

>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}

Probab=99.57  E-value=7.8e-15  Score=141.58  Aligned_cols=139  Identities=12%  Similarity=0.047  Sum_probs=106.5

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      .+.+.+..|    .+.+++|+.++|..||+.                .|.+||++|+|||++||+... +.+.       
T Consensus         7 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~aPs~~n~qp~~~~vv~~~-~~~~-------   62 (178)
T 3e39_A            7 PVLQAIRQRRSIRRYTDEAVSDEAVRLILEA----------------GIWAPSGLNNQPCRFLVIRAD-DPRC-------   62 (178)
T ss_dssp             HHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEEETT-STHH-------
T ss_pred             HHHHHHHhCcchhcCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECH-HHHH-------
Confidence            345555443    467899999999999998                588999999999999988764 2110       


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec-
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE-  290 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~-  290 (650)
                              ..+.....    .+.++.+||++|+++++..+..  +    -.+..+|+|+++||++|+|+++|||+||++ 
T Consensus        63 --------~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~~--~----~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~  124 (178)
T 3e39_A           63 --------DILAAHTR----YGHIVRGAKVIILVFLDREAMY--N----EVKDHQAAGAAVQNMLLAAHALQLGAVWLGE  124 (178)
T ss_dssp             --------HHHHTTCS----CHHHHHHCSEEEEEEEEGGGCS--C----HHHHHHHHHHHHHHHHHHHHHTTCEEEEECG
T ss_pred             --------HHHHHhhh----cchhhcCCCEEEEEEEcccccc--c----cccHHHHHHHHHHHHHHHHHHcCCeEEEecC
Confidence                    12222110    1234568999999999865421  1    135589999999999999999999999999 


Q ss_pred             -ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 -GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 -~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                       +|+++.++++|||+...+.++++++|
T Consensus       125 ~~~~~~~~~~~l~lp~~~~~~~~~i~l  151 (178)
T 3e39_A          125 IINQAATLLPALALDPARLSFEAAIAA  151 (178)
T ss_dssp             GGGGHHHHHHHTTCCTTTEEEEEEEEE
T ss_pred             cccchHHHHHHhCcCCCceEEEEEEEE
Confidence             89999999999998764778888888

>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0

Probab=99.57  E-value=5.2e-15  Score=146.67  Aligned_cols=143  Identities=13%  Similarity=0.122  Sum_probs=106.6

Q ss_pred             chhhhhccC----CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333          136 PLYSSLFTS----LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA  210 (650)
Q Consensus       136 ~~~~~l~~~----~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY  210 (650)
                      .+.+.+..|    .+.+ ++|+.++|.+||+.                .|.+||++|+|||+++|+... +.        
T Consensus        10 ~~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~--------   64 (213)
T 3gbh_A           10 DFNEVLNSRKSVKVFDENYKIPREEMDEIITK----------------ATKAPSSVNMQPWRIAVVQSD-EM--------   64 (213)
T ss_dssp             BHHHHHHHCCBCCCBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECSH-HH--------
T ss_pred             HHHHHHHhhhhHhhcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCcEEEEEeCH-HH--------
Confidence            455555543    4666 69999999999998                588999999999999887652 11        


Q ss_pred             EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhc--------------------------------
Q 006333          211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE--------------------------------  258 (650)
Q Consensus       211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~--------------------------------  258 (650)
                              +..+.+...   ..+..+.+||++|+++++..+.  ++..                                
T Consensus        65 --------~~~L~~~~~---~~~~~~~~ap~~iv~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (213)
T 3gbh_A           65 --------KEKVKESFG---FNSRQLTTSSAMLIIFGDLQNY--EKAEQIYGDAVEQQLMTEDIKAQLLDWILPYYKNLS  131 (213)
T ss_dssp             --------HHHHTGGGG---GGHHHHHHSSEEEEEEEETTGG--GGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHTSC
T ss_pred             --------HHHHHHhhc---cCchhhccCCeeEEEEecCchh--hhHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC
Confidence                    112222110   0123456899999999986542  2111                                


Q ss_pred             --hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          259 --RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       259 --rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                        ....+.++|+|+++||++|+|+++||++|++++|+.+.++++|||+.+.+.++++++|
T Consensus       132 ~~~~~~~~~~d~g~a~~~l~LaA~~~Glgsc~i~~~~~~~v~~~L~lp~~~~~~~~~i~l  191 (213)
T 3gbh_A          132 REGMKDIVNIDSSLMAMQLMLTAKAHGYDTNPIGGFDKENIADIIGYDSDRYVPVLAIAI  191 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCTTTHHHHHTCCTTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeecCcCHHHHHHHhCCCccCceEEEEEEe
Confidence              1123578999999999999999999999999999999999999999556778888888

>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*

Probab=99.57  E-value=8.6e-15  Score=143.29  Aligned_cols=139  Identities=12%  Similarity=0.054  Sum_probs=107.0

Q ss_pred             cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333          135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA  210 (650)
Q Consensus       135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY  210 (650)
                      ..+.+.+..|    .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+       
T Consensus        20 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~~-------   75 (191)
T 3h4o_A           20 MNFVELAKKRYSCRNYQDRKVEKEKLEKVLDV----------------ARIAPTGGNRQPQRLIVIQEK-EGI-------   75 (191)
T ss_dssp             CCHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHHSCCGGGCCCEEEEEECSH-HHH-------
T ss_pred             HHHHHHHHhCccccccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEeCH-HHH-------
Confidence            3455666543    467899999999999998                588999999999999887652 111       


Q ss_pred             EecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333          211 HYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE  290 (650)
Q Consensus       211 hY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~  290 (650)
                               ..+...      .  .+.+||++|+++++..+. |+....++++..+|+|+++||++|+|+++|||+||++
T Consensus        76 ---------~~l~~~------~--~~~~Ap~~ivv~~~~~~~-~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGLgsc~~~  137 (191)
T 3h4o_A           76 ---------NKLSKA------A--NIYDAPLAILVCGDKDKV-WTRPFDGKQLTDIDTSIVTDHMMLQATELGLASVWVC  137 (191)
T ss_dssp             ---------HHHHHH------S--CCTTCSEEEEEEEETTTS-CBCTTTCCBCHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             ---------HHHHHh------c--CcCCCCEEEEEEEecchh-cccccccccchHHHHHHHHHHHHHHHHHCCCCEEEEc
Confidence                     112111      0  145899999999986543 2222234577889999999999999999999999999


Q ss_pred             ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 ~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +|+++.++++|||+.. +.++++++|
T Consensus       138 ~~~~~~v~~~l~lp~~-~~~~~~i~l  162 (191)
T 3h4o_A          138 YFNPDIIREEFSLPDN-LEPINILLM  162 (191)
T ss_dssp             CSCHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             ccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence            9999999999999864 567888888

>2isk_A BLUB; oxidoreductase, flavin, monooxygenase, flavin destructase, vitamin B12, dithionite, charge transfer complex, flavoprotein; HET: FNR; 2.10A {Sinorhizobium meliloti} PDB: 2isj_A* 2isl_A*

Probab=99.56  E-value=6.4e-15  Score=147.77  Aligned_cols=150  Identities=16%  Similarity=0.072  Sum_probs=108.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +...   .++.+....+... -..
T Consensus        39 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~~---~l~~~~~~~~~~~-~~~   97 (230)
T 2isk_A           39 EFLPEPLSEELIARLLGA----------------AHQAPSVGFMQPWNFVLVRQD-ETRE---KVWQAFQRANDEA-AEM   97 (230)
T ss_dssp             CCCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHHH---HHHHHHHHHHHHH-HHT
T ss_pred             ccCCCCCCHHHHHHHHHH----------------HhhCCCCCCCCCeEEEEEcCH-HHHH---HHHHHHHHHHHHH-hhh
Confidence            567889999999999998                588999999999999887643 2221   2333211111000 000


Q ss_pred             CCch--h---ccccccCCCCcEEEEEeeechhH-HHhhhchhhh-HHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHH
Q 006333          225 IPSR--F---DLFNNFFPKNSFLVGFSSIFWRE-AWKYGERAFR-YCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKEL  297 (650)
Q Consensus       225 ~~~~--~---~~~~~~~~~a~~~iv~ta~~~r~-~~KYg~rayR-~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l  297 (650)
                      ....  .   ......+.++|++|+++++..+. .++|+.+.++ +.++|+|+++|||+|+|+++||++||+++|+++.+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~lGlgs~~~~~~~~~~v  177 (230)
T 2isk_A           98 FSGERQAKYRSLKLEGIRKAPLSICVTCDRTRGGAVVLGRTHNPQMDLYSTVCAVQNLWLAARAEGVGVGWVSIFHESEI  177 (230)
T ss_dssp             SCHHHHHHHHHSCCCCTTTSSEEEEEEEETTTTCSSCTTCSSCTTHHHHHHHHHHHHHHHHHHHHTEEEEECCCSCHHHH
T ss_pred             cCHHHHHHHHHHhhhhhhcCCeEEEEEEecccccccccCccccchhHHHHHHHHHHHHHHHHHHCCCceeeecccCHHHH
Confidence            0000  0   00112467899999999886654 2688888775 67899999999999999999999999999999999


Q ss_pred             HHHhCCCCCCcceeeeccc
Q 006333          298 KKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       298 ~~lLgLd~~~E~v~~~~~i  316 (650)
                      +++|||+. .+.++++++|
T Consensus       178 ~~~L~lp~-~~~~~~~i~l  195 (230)
T 2isk_A          178 KAILGIPD-HVEIVAWLCL  195 (230)
T ss_dssp             HHHHTCCT-TEEEEEEEEE
T ss_pred             HHHhCCCC-CceeEEEEEE
Confidence            99999985 4567788888

>3eof_A Putative oxidoreductase; YP_213212.1, structural genomics, J center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.99A {Bacteroides fragilis nctc 9343} SCOP: d.90.1.0

Probab=99.56  E-value=2e-14  Score=146.38  Aligned_cols=135  Identities=15%  Similarity=0.141  Sum_probs=103.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.++||+.++|.+||+.                .+.+||++|++||+++|+... +.                +..+.
T Consensus        13 R~F~~~pV~~e~L~~ilea----------------A~~APS~~N~Qpw~fivv~~~-e~----------------~~~L~   59 (248)
T 3eof_A           13 RKYQQKDITPDLLNDLLET----------------SFRASTMGGMQLYSVVVTRDA-EK----------------KEILS   59 (248)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HH----------------HHHHT
T ss_pred             cCCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCcCeEEEEEECH-HH----------------HHHHH
Confidence            3467899999999999998                578999999999999887643 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHH-Hh--------hhc-hhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc--
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-WK--------YGE-RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG--  291 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-~K--------Yg~-rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~--  291 (650)
                      ....    .+.++.+||++|+++++..+.. |.        |.+ ..+.++.+|+|+++||++|+|+++|||+||+++  
T Consensus        60 ~~~~----~~~~~~~Ap~~ivv~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLGsc~ig~~~  135 (248)
T 3eof_A           60 PAHF----NQPMVKEAPVVLTFCADFRRFCKYCQERNAVPGYGNLMSFLNAAMDTLLVAQTFCTLAEEAGLGICYLGTTT  135 (248)
T ss_dssp             TTTT----TCTHHHHSSEEEEEEEECHHHHHHHHTTTCCCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGG
T ss_pred             HHhc----CCCcccCCCEEEEEEEechHhHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccc
Confidence            2110    1234568999999999987643 21        111 124578999999999999999999999999998  


Q ss_pred             cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+.+.+.++|||+. .+.++++++|
T Consensus       136 ~~~~~v~~~L~lp~-~~~~v~~i~l  159 (248)
T 3eof_A          136 YNPQMIIDALHLPE-LVFPITTVTV  159 (248)
T ss_dssp             TSHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred             cCHHHHHHHhCcCC-CceEEEEEEE
Confidence            99999999999987 4678888888

>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1

Probab=99.56  E-value=1.6e-14  Score=141.93  Aligned_cols=134  Identities=9%  Similarity=0.038  Sum_probs=99.5

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +       .           .+.+
T Consensus        18 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~-------~-----------~l~~   62 (204)
T 2b67_A           18 HFTDKLVDPKDVRTAIEI----------------ATLAPSAHNSQPWKFVVVREK-N-------A-----------ELAK   62 (204)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEESSS-H-------H-----------HHHT
T ss_pred             ccCCCCCCHHHHHHHHHH----------------HHhCcCcccCCCeEEEecCCh-h-------H-----------HHHH
Confidence            467899999999999998                588999999999999887653 1       1           1111


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHH-------------------Hhhh------------chhhhHHHHHHHHHHH
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREA-------------------WKYG------------ERAFRYCNHDVGHAIA  273 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-------------------~KYg------------~rayR~~~lDaG~~~q  273 (650)
                      ....  ..+..+.+++++|+++++.....                   ..|+            +..+.++.+|+|+++|
T Consensus        63 ~~~~--~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~d~g~a~~  140 (204)
T 2b67_A           63 LAYG--SNFEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVAM  140 (204)
T ss_dssp             TBCT--THHHHHHHSSEEEEEEEESCHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH--cCchhhcCCCEEEEEEecCchHHHHHHHHHcccchhhHHHHHHHHHhhhhhhhhccCHHHHHHHHHHHHHHHHH
Confidence            1100  01123457888888888754210                   0121            1123467789999999


Q ss_pred             HHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          274 AVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       274 ~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus       141 nl~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~-~~~~~~~i~l  182 (204)
T 2b67_A          141 NLVLALTDQGIGSNIILGFDKSKVNEVLEIED-RFRPELLITV  182 (204)
T ss_dssp             HHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred             HHHHHHHHCCCceeeEcccCHHHHHHHhCCCC-CCceEEEEEe
Confidence            99999999999999999999999999999986 4667888888

>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0

Probab=99.55  E-value=1.6e-14  Score=147.34  Aligned_cols=135  Identities=14%  Similarity=0.165  Sum_probs=105.5

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.++||+.++|..||+.                .|.+||++|++||+++|+... +.                ...+.
T Consensus        15 R~F~~~~V~~e~L~~il~a----------------A~~APS~~N~Qpw~~ivv~d~-~~----------------~~~L~   61 (249)
T 3n2s_A           15 RSFTDQLLTAEEIDTLVKS----------------AQAASTSSYVQAYSIIGVSDP-EK----------------KRELS   61 (249)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCcCeEEEEEeCH-HH----------------HHHHH
Confidence            3467899999999999998                588999999999999887542 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchh------------hhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERA------------FRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra------------yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                      +...    .+.++.++|.+|+++++..+....+...+            +.+..+|+|+++||++|+|+++|||+||+++
T Consensus        62 ~~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~slGLgsc~ig~  137 (249)
T 3n2s_A           62 VLAG----NQPYVEKNGHFFVFCADLYRHQQLAEEKGEHISELLENTEMFMVSLIDAALAAQNMSIAAESMGLGICYIGG  137 (249)
T ss_dssp             HHTT----SCGGGTSSSEEEEEEEECHHHHHHHHHTTCCCGGGGCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGG
T ss_pred             Hhhc----CchhhHhCcchhhhhhhhHHHHHHHHHcCCchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCEeeecc
Confidence            1110    13467889999999999887665443222            3357899999999999999999999999999


Q ss_pred             c--CHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 M--GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f--~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |  +.+.+.++|||+.. +.++++++|
T Consensus       138 ~~~~~~~v~~~L~lp~~-~~~~~~l~l  163 (249)
T 3n2s_A          138 IRNELDKVTEVLQTPDH-VLPLFGLAV  163 (249)
T ss_dssp             GGGGHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred             ccccHHHHHHHhCcCCC-ceEEEEEEE
Confidence            9  88999999999864 567788888

>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}

Probab=99.55  E-value=2.6e-14  Score=136.53  Aligned_cols=129  Identities=16%  Similarity=0.157  Sum_probs=101.0

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.+||+.                .|.+||++|++||+++|+... +.                +..+.
T Consensus        12 R~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qp~~~~vv~~~-~~----------------~~~l~   58 (168)
T 3e10_A           12 RNYKGKKVEKEKIEKLLRA----------------AMQAPSAGNQQPWEFIVLEDR-EN----------------IDKLS   58 (168)
T ss_dssp             CCBCSSCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHG
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEcCH-HH----------------HHHHH
Confidence            4577899999999999998                478999999999999887542 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH----HHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY----KELKK  299 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d----~~l~~  299 (650)
                      +...    .+.++.+||++|+++++..+.  +|    .++..+|+|+++||++|+|+++|||+||+++|+.    +.+++
T Consensus        59 ~~~~----~~~~~~~Ap~~iv~~~~~~~~--~~----~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~~  128 (168)
T 3e10_A           59 NFSK----YANSLKTAPLAIVLLADEEKM--KI----SEMWEQDMAAAAENILLEAAYLDLGAVWLGAQPIEERVKNLKE  128 (168)
T ss_dssp             GGST----TCGGGGGCSEEEEEEEEGGGC--SS----GGGHHHHHHHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHH
T ss_pred             Hhcc----cchhhhcCCEEEEEEEccccc--cC----cchHHHHHHHHHHHHHHHHHHCCCeEEEEecccccchhHHHHH
Confidence            1110    123567899999999986543  22    3567899999999999999999999999999875    89999


Q ss_pred             HhCCCCCCcceeeeccc
Q 006333          300 LMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       300 lLgLd~~~E~v~~~~~i  316 (650)
                      +|||+. .+.++++++|
T Consensus       129 ~l~lp~-~~~~~~~i~l  144 (168)
T 3e10_A          129 MFNLKS-NIKPFCVISV  144 (168)
T ss_dssp             HTTCCT-TEEEEEEEEE
T ss_pred             HcCcCC-CceEEEEEEE
Confidence            999975 4678888888

>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}

Probab=99.54  E-value=1e-14  Score=144.53  Aligned_cols=134  Identities=14%  Similarity=0.109  Sum_probs=99.7

Q ss_pred             CCCCCCC-CCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPPPQP-LTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~~~p-l~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+.+++ |+.++|.+||+.                .|.+||++|+|||+++|+... +.                ...+
T Consensus        20 R~f~~~~~V~~e~l~~ilea----------------a~~APS~~N~Qpw~fivv~~~-~~----------------~~~l   66 (210)
T 3qdl_A           20 KMFDSHYEFSSTELEEIAEI----------------ARLSPSSYNTQPWHFVMVTDK-DL----------------KKQI   66 (210)
T ss_dssp             CCBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HH----------------HHHH
T ss_pred             hhcCCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEcCH-HH----------------HHHH
Confidence            3467776 999999999998                589999999999999877542 11                1123


Q ss_pred             ccCCchhccccccCCCCcEEEEEeeechhHHHhhh----------------------------------chhhhHHHHHH
Q 006333          223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYG----------------------------------ERAFRYCNHDV  268 (650)
Q Consensus       223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg----------------------------------~rayR~~~lDa  268 (650)
                      .+....   .+..+.+|+++|+++++.   .|++.                                  ++...++..|+
T Consensus        67 ~~~~~~---~~~~~~~Ap~~iv~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  140 (210)
T 3qdl_A           67 AAHSYF---NEEMIKSASALMVVCSLR---PSELLPHGHYMQNLYPESYKVRVIPSFAQMLGVRFNHSMQRLESYILEQC  140 (210)
T ss_dssp             HTTSGG---GHHHHHHCSEEEEEEECC---HHHHCC--------------------------------CCHHHHHHHHHH
T ss_pred             HHHHhh---cchhhcCCCEEEEEEecc---hHHHHHHHHHHccCCcHHHHHHHHHHHHHhhcccccchHHHHHHHHHHHH
Confidence            222110   112346788888888753   23220                                  11235678899


Q ss_pred             HHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          269 GHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       269 G~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++||++|+|+++|||+||+++|+.+.++++|||+.+.+.++++++|
T Consensus       141 g~a~~~~~LaA~~~Glgs~~~~~~~~~~~~~~l~lp~~~~~~~~~i~~  188 (210)
T 3qdl_A          141 YIAVGQICMGVSLMGLDSCIIGGFDPLKVGEVLEERINKPKIACLIAL  188 (210)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHHHTTSCCCEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCceeecccCHHHHHHHhCCCCCCceEEEEEEe
Confidence            999999999999999999999999999999999999445678888888

>1zch_A Hypothetical oxidoreductase YCND; nitroreductase, NADH-oxidase; HET: FMN; 1.85A {Bacillus subtilis} SCOP: d.90.1.1

Probab=99.54  E-value=1.6e-14  Score=147.72  Aligned_cols=134  Identities=17%  Similarity=0.216  Sum_probs=104.4

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.++||+.++|.+||+.                .|.+||++|++||+++|+... +.                ...+.+
T Consensus        16 ~F~~~~V~~e~l~~il~a----------------A~~APS~~n~Qpw~~ivv~d~-~~----------------~~~L~~   62 (255)
T 1zch_A           16 SYTDEPVAQEQLDQIIEA----------------VQSAPSSINGQQVTVITVQDK-ER----------------KKKISE   62 (255)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HHHSCCGGGCCCEEEEEECCH-HH----------------HHHHHH
T ss_pred             CcCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCEEEEEEcCH-HH----------------HHHHHH
Confidence            467889999999999998                578999999999999887542 11                112221


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHHHhhhc------------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE------------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM  292 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~------------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f  292 (650)
                      ...    .+.++.+++.+|++++++.+..+.+..            ..+++..+|+|+++||++|+|+++|||+|++++|
T Consensus        63 ~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qnl~LaA~alGLgsc~ig~~  138 (255)
T 1zch_A           63 LAG----GQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAV  138 (255)
T ss_dssp             HTT----CCHHHHHSSEEEEEEEECHHHHHHHHHHHCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred             hhc----cchhhhcCCceeEEEEechHHHHHHHHhcCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHCCCcEeeeccc
Confidence            100    123455788999999998887665543            2356788999999999999999999999999998


Q ss_pred             --CHHHHHHHhCCCCCCcceeeeccc
Q 006333          293 --GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       293 --~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                        +++.|.++|||+.. +.++++++|
T Consensus       139 ~~~~~~v~~~L~lp~~-~~~~~~l~l  163 (255)
T 1zch_A          139 RGNPQELIELLELPKY-VFPLSGLVI  163 (255)
T ss_dssp             GSSHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             ccCHHHHHHHhCcCCC-ceEEEEEEE
Confidence              88999999999854 667778888

>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0

Probab=99.53  E-value=2e-14  Score=141.62  Aligned_cols=134  Identities=14%  Similarity=0.091  Sum_probs=100.5

Q ss_pred             CCCC-CCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPPP-QPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~~-~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .|.+ ++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+                +.+.
T Consensus        18 ~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~~----------------~~l~   64 (206)
T 3gag_A           18 RFDPDAVLPNDLIKDMLEH----------------ASYAPSGNNFQPWRVVVVKNK-NKQ----------------EDLK   64 (206)
T ss_dssp             CBCTTCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HHH----------------HHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHHCCCCCCCCCeEEEEEcCH-HHH----------------HHHH
Confidence            4664 79999999999998                588999999999999887653 111                1222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHH-Hh-hhc-----------------------------hhhhHHHHHHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA-WK-YGE-----------------------------RAFRYCNHDVGHAI  272 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~-~K-Yg~-----------------------------rayR~~~lDaG~~~  272 (650)
                      +...    .+..+.+|+++|+++++..+.. .+ |+.                             ....+..+|+|+++
T Consensus        65 ~~~~----~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~  140 (206)
T 3gag_A           65 KLAA----LQPQVATASAVFLLFGDENAYDLTWWQEFHVQKGIITKDEAAARAERIRQYFDLHPEDKETQGLRLDVGLFA  140 (206)
T ss_dssp             HTTT----TCTHHHHSSEEEEEEEEGGGCCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHCGGGGSHHHHHHHHHHHH
T ss_pred             HHhc----CCccccCCCEEEEEEecCCcccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHH
Confidence            2110    1234568899999999865431 11 110                             11236789999999


Q ss_pred             HHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          273 AAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       273 q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ||++|+|+++||++|++++|+.+.++++|||+. .+.++++++|
T Consensus       141 ~nl~LaA~~~Glgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~l  183 (206)
T 3gag_A          141 MNLMQVVRVYGYDSVPMRGVDFDAIKTYLDMPN-GWEPILMLPV  183 (206)
T ss_dssp             HHHHHHHHHTTCEECCBCCSCHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred             HHHHHHHHHcCCCeeeecccCHHHHHHHhCcCC-CcceEEEEEe
Confidence            999999999999999999999999999999984 4668888888

>1f5v_A Oxygen-insensitive NADPH nitroreductase; flavoprotein, oxidoreduction, nitrocompound, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1

Probab=99.52  E-value=2.1e-14  Score=145.46  Aligned_cols=135  Identities=14%  Similarity=0.099  Sum_probs=104.9

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.++|..||+.                .|.+||++|++||+++|+... +.                ...+.
T Consensus        15 R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~ivv~~~-~~----------------~~~l~   61 (240)
T 1f5v_A           15 RHFTDEPISEAQREAIINS----------------ARATSSSSFLQCSSIIRITDK-AL----------------REELV   61 (240)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHH
T ss_pred             cCcCCCCCCHHHHHHHHHH----------------HHhCCCcccCCCeEEEEEeCH-HH----------------HHHHH
Confidence            3467899999999999998                478999999999998776532 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhc------hhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGE------RAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYK  295 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~------rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~  295 (650)
                      +...    .+.++.+++.+|++++++.+..+.|..      +.+++..+|+|+++||++|+|+++|||+|++++|  +++
T Consensus        62 ~~~~----~~~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~  137 (240)
T 1f5v_A           62 TLTG----GQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIE  137 (240)
T ss_dssp             HHTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHH
T ss_pred             HHhc----CChhHHcccHHHHHHHHHHHHHHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEecccccCHH
Confidence            1100    123456788999999998887665543      4567889999999999999999999999999999  789


Q ss_pred             HHHHHhCCCCCCcceeeeccc
Q 006333          296 ELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       296 ~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .+.++|||+.. +.++++++|
T Consensus       138 ~v~~~L~lp~~-~~~~~~l~l  157 (240)
T 1f5v_A          138 AVTKLLKLPQH-VLPLFGLCL  157 (240)
T ss_dssp             HHHHHTTCCTT-EEEEEEEEE
T ss_pred             HHHHHhCCCCC-ceEEEEEEE
Confidence            99999999864 567778888

>1bkj_A NADPH-flavin oxidoreductase; luminescence, flavoprotein; HET: FMN; 1.80A {Vibrio harveyi} SCOP: d.90.1.1 PDB: 2bkj_A*

Probab=99.52  E-value=2.2e-14  Score=145.29  Aligned_cols=134  Identities=15%  Similarity=0.097  Sum_probs=104.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|..||+.                .+.+||++|++||+++|+... +.                +..+.+
T Consensus        16 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~ivv~~~-~~----------------~~~l~~   62 (240)
T 1bkj_A           16 KFTAVPITDEQRQTIIQA----------------GLAASSSSMLQVVSIVRVTDS-EK----------------RNELAQ   62 (240)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHHH
T ss_pred             CCCCCCCCHHHHHHHHHH----------------HHhCCCccCCCCEEEEEEcCH-HH----------------HHHHHH
Confidence            467889999999999998                478999999999998775432 11                112221


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHHHhhhch------hhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHH
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER------AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKE  296 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r------ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~  296 (650)
                      ...    .+.++.+++++|++++++.+....+..+      .+++..+|+|+++||++|+|+++|||+|++++|  +++.
T Consensus        63 ~~~----~q~~~~~ap~~iv~~~d~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~qnl~LaA~~lGLgsc~ig~~~~~~~~  138 (240)
T 1bkj_A           63 FAG----NQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQ  138 (240)
T ss_dssp             HTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHH
T ss_pred             HhC----CCchhhcCchhhHHHHhhHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEecccccCHHH
Confidence            100    1234567899999999988876665543      356788999999999999999999999999999  7899


Q ss_pred             HHHHhCCCCCCcceeeeccc
Q 006333          297 LKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       297 l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |.++|||+.. +.++++++|
T Consensus       139 v~~~L~lp~~-~~~~~~l~l  157 (240)
T 1bkj_A          139 VDELLGLPEN-SAVLFGMCL  157 (240)
T ss_dssp             HHHHTTCCTT-EEEEEEEEE
T ss_pred             HHHHhCcCCC-eeEEEEEEE
Confidence            9999999864 567788888

>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1

Probab=99.52  E-value=3.4e-14  Score=139.45  Aligned_cols=142  Identities=8%  Similarity=0.072  Sum_probs=101.5

Q ss_pred             hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEe
Q 006333          137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHY  212 (650)
Q Consensus       137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY  212 (650)
                      +.+.+..|    .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+         
T Consensus        10 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~-~~~---------   63 (205)
T 1nox_A           10 AKTAALKRRSIRRYRKDPVPEGLLREILEA----------------ALRAPSAWNLQPWRIVVVRDP-ATK---------   63 (205)
T ss_dssp             HHHHHHHCCCCCCBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCEEEEEECCH-HHH---------
T ss_pred             HHHHHHHhhhhccCCCCCCCHHHHHHHHHH----------------HhhCcCcCCccceEEEEEcCH-HHH---------
Confidence            44555443    467889999999999998                588999999999998876542 111         


Q ss_pred             cCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhH------------------------HHhhh----chhhhHH
Q 006333          213 APKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWRE------------------------AWKYG----ERAFRYC  264 (650)
Q Consensus       213 ~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~------------------------~~KYg----~rayR~~  264 (650)
                             ..+.+...    .+..+.+++.+|+++++..+.                        ...|+    +..+++.
T Consensus        64 -------~~l~~~~~----~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  132 (205)
T 1nox_A           64 -------RALREAAF----GQAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWA  132 (205)
T ss_dssp             -------HHHHHHTT----TCTHHHHSSEEEEEEECHHHHHHTGGGTSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred             -------HHHHHhcc----CChhhcCCCeEEEEEecccchHHHHHHHHHhccCcHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence                   11211100    012234567777777765320                        01121    1225678


Q ss_pred             HHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          265 NHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       265 ~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .+|+|+++||++|+|+++|||+||+++|+++.++++|||+.. +.++++++|
T Consensus       133 ~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~~-~~~~~~i~l  183 (205)
T 1nox_A          133 SGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPSR-AAIPALVAL  183 (205)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcccccCCCHHHHHHHhCCCCC-CceEEEEEe
Confidence            899999999999999999999999999999999999999954 567888888

>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}

Probab=99.52  E-value=4.9e-14  Score=139.59  Aligned_cols=137  Identities=17%  Similarity=0.052  Sum_probs=95.5

Q ss_pred             CCCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+. +++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+.                .+
T Consensus        17 R~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~-~~~~----------------~l   63 (217)
T 2h0u_A           17 KKYDPNRRISQKDWEALVEV----------------GRLAPSSIGLEPWKMLLLKNE-RMKE----------------DL   63 (217)
T ss_dssp             CCBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEECCC------------------------
T ss_pred             HhcCCCCCCCHHHHHHHHHH----------------HhhCCcccCCCCeEEEEEeCH-HHHH----------------HH
Confidence            3467 789999999999998                588999999999999876543 2221                11


Q ss_pred             ccCCchhccccccCCCCcEEEEEeeechhH------HHh------------------h------------hchhhhHHHH
Q 006333          223 AKIPSRFDLFNNFFPKNSFLVGFSSIFWRE------AWK------------------Y------------GERAFRYCNH  266 (650)
Q Consensus       223 ~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~------~~K------------------Y------------g~rayR~~~l  266 (650)
                      .+....   .+..+.+++.+|+++++....      ...                  |            .+..+.+..+
T Consensus        64 ~~~~~~---~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (217)
T 2h0u_A           64 KPMAWG---ALFGLEGASHFVIYLARKGVTYDSDYVKKVMHEVKKRDYDTNSRFAQIIKNFQENDMKLNSERSLFDWASK  140 (217)
T ss_dssp             ----------------CCEEEEEEEESCCCTTCHHHHHHHHHTTCCCCCTTSHHHHHHHHHHHTTSCCCSHHHHHHHHHH
T ss_pred             HHHHhc---ChhhhcCCCEEEEEEEcCCcccchHHHHHHHHHHhhcccchHHHHHHHHHHHHHhhcccCCHHHHHHHHHH
Confidence            111000   123456788888888774321      000                  1            1123456789


Q ss_pred             HHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh---C-CCCCCcceeeeccc
Q 006333          267 DVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM---G-LDIFPEFVIPSKPI  316 (650)
Q Consensus       267 DaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL---g-Ld~~~E~v~~~~~i  316 (650)
                      |+|+++||++|+|+++|||+||+++|+++.++++|   | |+++.+.++++++|
T Consensus       141 d~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~~~~~l~p~~~~~~~~i~l  194 (217)
T 2h0u_A          141 QTYIQMANMMMAAAMLGIDSCPIEGYDQEKVEAYLEEKGYLNTAEFGVSVMACF  194 (217)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHHTSCCTTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCcCCCcCcCHHHHHHHHhhcCCCCccccceEEEEEe
Confidence            99999999999999999999999999999999999   9 86666778888888

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.51  E-value=3e-14  Score=150.61  Aligned_cols=133  Identities=14%  Similarity=0.119  Sum_probs=101.8

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.++||+.++|.+||++                .|.+||++|+|||+++|+... +.                +..+.+
T Consensus       156 ~F~~~~V~~e~l~~ilea----------------A~~APS~~N~Qpwrfivv~d~-e~----------------~~~l~~  202 (322)
T 4eo3_A          156 ALKKDRVPREELELLIKA----------------AHLAPSCMNNQPWRFVVVDEE-EL----------------LKKIHE  202 (322)
T ss_dssp             CBCCCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCH-HH----------------HHHHHT
T ss_pred             CcCccccCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEeCH-HH----------------HHHHHH
Confidence            468999999999999998                589999999999998876542 11                122332


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCC
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLD  304 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd  304 (650)
                      .-..   .+.++.+||++|+++++......  ......+...|+|+++||++|+|+++|||+||+++|+.+.++++|||+
T Consensus       203 ~~~~---~~~~~~~Ap~~ivv~~~~~~~~~--~~~~~~~~~~d~g~a~~nl~LaA~~~GLgs~~~~~~~~~~v~~~L~lP  277 (322)
T 4eo3_A          203 ALPG---GNYWMKNAPALIAVHSKKDFDCA--LPDNRDYFLFDTGLAVGNLLVQATQMGLVAHPVAGYDPVKVKEILKIP  277 (322)
T ss_dssp             TSCG---GGGGGGGCSEEEEEEECGGGSCE--ETTTEECHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCC
T ss_pred             hhhh---ccccccCCCEEEEEEeecccccc--ccccccchHHHHHHHHHHHHHHHHHcCcCEEEcCccCHHHHHHHcCcC
Confidence            2111   13456789999999887432211  112334678899999999999999999999999999999999999998


Q ss_pred             CCCcceeeeccc
Q 006333          305 IFPEFVIPSKPI  316 (650)
Q Consensus       305 ~~~E~v~~~~~i  316 (650)
                      .. +.++++++|
T Consensus       278 ~~-~~~~~~ial  288 (322)
T 4eo3_A          278 ED-HVLITLIAV  288 (322)
T ss_dssp             TT-SEEEEEEEE
T ss_pred             CC-CEEEEEEEE
Confidence            65 567778888

>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}

Probab=99.51  E-value=4.9e-14  Score=140.23  Aligned_cols=134  Identities=16%  Similarity=0.133  Sum_probs=99.0

Q ss_pred             CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+. +++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+                ..+.
T Consensus        28 ~f~~~~~V~~e~l~~il~a----------------a~~APS~~N~Qpw~f~vv~~~-~~~----------------~~l~   74 (218)
T 3bem_A           28 NFLSGHPITKEDLNEMFEL----------------VALAPSAFNLQHTKYVTVLDQ-DVK----------------EKLK   74 (218)
T ss_dssp             CCCSSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HHH----------------HHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEECCH-HHH----------------HHHH
Confidence            467 589999999999998                588999999999999887643 111                1222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhH-----HHh-----------------------h----hchhhhHHHHHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWRE-----AWK-----------------------Y----GERAFRYCNHDVGHA  271 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~-----~~K-----------------------Y----g~rayR~~~lDaG~~  271 (650)
                      +...    .+..+.+++.+|+++++....     .++                       |    ..+...+..+|+|++
T Consensus        75 ~~~~----~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a  150 (218)
T 3bem_A           75 QAAN----GQYKVVSSSAVLLVLGDKQAYQQAADIYEGLKVLGILNKQEYDHMVQDTVSFYENRGEQFKRDEAIRNASLS  150 (218)
T ss_dssp             HTTT----TCTHHHHSSEEEEEEEETTGGGGHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             Hhcc----CCCccCCCCeEEEEEecchhhhhhHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHH
Confidence            2110    012345788888888774320     000                       1    122345778999999


Q ss_pred             HHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          272 IAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       272 ~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +||++|+|+++|||+||+++|+++.++++|||+. .+.++++++|
T Consensus       151 ~~nl~LaA~~lGLgsc~~~~~~~~~v~~~L~lp~-~~~~~~~i~l  194 (218)
T 3bem_A          151 AMMFMLSAAAAGWDTCPMIGFDAEAVKRILNIDD-QFEVVMMITI  194 (218)
T ss_dssp             HHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred             HHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCC-CceeEEEEEe
Confidence            9999999999999999999999999999999985 4567788888

>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}

Probab=99.51  E-value=2.6e-14  Score=141.87  Aligned_cols=154  Identities=15%  Similarity=0.169  Sum_probs=104.2

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc--cccCCCCeeeEecCCCC-----
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI--ESLCDSPFVAHYAPKEH-----  217 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v--~gL~~~pGvYhY~p~~h-----  217 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+...-  +.|.+  .+........     
T Consensus        16 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~~l~~--~~~~~~~~~~~~~~~   77 (219)
T 3eo8_A           16 KFKNQDVSDEDILKMIKA----------------AGAAPSGKNIQNWHFVVIKRRDLMEKIAD--VITKKQQEILVEMDK   77 (219)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCHHHHHHHHH--HHHHHHHHHHHHHTT
T ss_pred             ccCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEECHHHHHHHHH--HHHHHHHHhhhcccc
Confidence            467899999999999998                5889999999999998876531  11211  0000000000     


Q ss_pred             -chhhhccCCchhccccccCCCCcEEEEEeeechhHH--Hhhhchh-----------hhHHHHHHHHHHHHHHHHHHHcC
Q 006333          218 -ALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREA--WKYGERA-----------FRYCNHDVGHAIAAVAMAAAELG  283 (650)
Q Consensus       218 -~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~--~KYg~ra-----------yR~~~lDaG~~~q~l~LaA~alG  283 (650)
                       ...............+.++.+||++|+++++..+..  ..++..+           .++..+|+|+++||++|+|+++|
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~G  157 (219)
T 3eo8_A           78 VSVDKANRFRKFVKNFTLFYLKAPVLVLVFTKVYNPSGYYELELIDAPKETIDKLFIRNPGMQSLGAAIENFTLSAIELG  157 (219)
T ss_dssp             TCHHHHHHHHHHHHHHTGGGGGSSEEEEEEECCCCCTTHHHHHHTTCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHhhhhhhhHhhcCCEEEEEEecccchhhhhhhhhcccchhHHhhhhhhhhhHHHHHHHHHHHHHHHHHCC
Confidence             000000000000001345779999999999876432  1122221           46788999999999999999999


Q ss_pred             CceEEecc--cCHHHHHHHhC----CCCCCcceeeeccc
Q 006333          284 WDVKILEG--MGYKELKKLMG----LDIFPEFVIPSKPI  316 (650)
Q Consensus       284 l~~~~i~~--f~d~~l~~lLg----Ld~~~E~v~~~~~i  316 (650)
                      ||+||+++  |+++.++++||    |+.+...++++++|
T Consensus       158 lgs~~~~~~~~~~~~v~~~L~~~~~lp~~~~~~~~~i~l  196 (219)
T 3eo8_A          158 YGSCWLTSQNYAADEIEAVLEAETGFEKGEYFLGAMLAL  196 (219)
T ss_dssp             CEEEEECTTGGGHHHHHHHHHHHHCCCCTTCEEEEEEEE
T ss_pred             CeeeeecCcccChHHHHHHhCcccCCCCCCceEEEEEEE
Confidence            99999988  99999999999    98755468888888

>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.51  E-value=4.2e-14  Score=136.17  Aligned_cols=134  Identities=14%  Similarity=0.152  Sum_probs=103.5

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      .+.+.+..|    .+.+++|+.++|.+||+.                .+.+||++|++||+++|+... +.         
T Consensus        11 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qp~~~~vv~~~-~~---------   64 (175)
T 3kwk_A           11 AALDNIFERKSVRTYLNKGVEKEKIDLMLRA----------------GMSAPSGKDVRPWEFVVVSDR-AK---------   64 (175)
T ss_dssp             HHHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCH-HH---------
T ss_pred             HHHHHHHhCcCccCCCCCCCCHHHHHHHHHH----------------HHHCcCccCCCCeEEEEEeCH-HH---------
Confidence            455565543    467899999999999998                578999999999999887642 11         


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                             +..+.+...    .+.++.+||++|+++++..+.         ++..+|+|+++||++|+|+++|||+||+++
T Consensus        65 -------~~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~---------~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~  124 (175)
T 3kwk_A           65 -------LDSMAAALP----YAKMLTQARNAIIVCGDSARS---------FYWYLDCSAAAQNILLAAESMGLGAVWTAA  124 (175)
T ss_dssp             -------HHHHHHHCT----TCGGGGGCSEEEEEEEETTTC---------TTHHHHHHHHHHHHHHHHHHTTCEECCEEC
T ss_pred             -------HHHHHHhcc----cchhhhcCCEEEEEEEeCccc---------cchHHHHHHHHHHHHHHHHHcCCCeEEEcc
Confidence                   112221100    123567899999999986531         456789999999999999999999999999


Q ss_pred             cCH----HHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGY----KELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d----~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+.    +.++++|||+. .+.++++++|
T Consensus       125 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l  152 (175)
T 3kwk_A          125 YPYEDRMEVVRKYTHLPE-NILPLCVIPF  152 (175)
T ss_dssp             TTCHHHHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred             ccccchHHHHHHHhCcCC-CcEEEEEEEE
Confidence            985    78999999986 4678888888

>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}

Probab=99.51  E-value=4.5e-14  Score=135.53  Aligned_cols=135  Identities=16%  Similarity=0.148  Sum_probs=103.3

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      .+.+.+..|    .+.+++|+.++|.+||+.                .+.+||++|++||+++|+... +.+        
T Consensus         7 ~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~~~vv~~~-~~~--------   61 (172)
T 3m5k_A            7 QTLETILNRKSVRKYKDRPVEKEKIDKLIRA----------------GMAAPSSRDRRPWEFIIVTDR-KAL--------   61 (172)
T ss_dssp             HHHHHHHHCCCCCCBCSSCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HHH--------
T ss_pred             HHHHHHHhCccccCcCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEcCH-HHH--------
Confidence            345555443    467899999999999998                578999999999999877542 111        


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                              ..+.+...    .+.++.+||++|+++++..+.        .++..+|+|+++||++|+|+++|||+||+++
T Consensus        62 --------~~l~~~~~----~~~~~~~Ap~~iv~~~~~~~~--------~~~~~~d~g~a~~nl~LaA~~~Glgt~~~~~  121 (172)
T 3m5k_A           62 --------DTMAEGLP----FARMLKETRQAIVVCGDTIKS--------SNAWFLDCSAASQNLLLAAESMGLGAVWTAV  121 (172)
T ss_dssp             --------HHHHHHCT----TCGGGGGCSEEEEEEEETTTC--------TTTHHHHHHHHHHHHHHHHHHTTCEECCEEC
T ss_pred             --------HHHHHhcc----cchhHhcCCEEEEEEecCccC--------CccHHHHHHHHHHHHHHHHHHcCCeEEEecc
Confidence                    12221100    123567899999999986542        3467789999999999999999999999999


Q ss_pred             cCH----HHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGY----KELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d----~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+.    +.++++|||+. .+.++++++|
T Consensus       122 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l  149 (172)
T 3m5k_A          122 YPYPDRIEIVRKELRLPD-HIMPLNVIPV  149 (172)
T ss_dssp             TTCHHHHHHHHHHHTCCT-TEEEEEEEEE
T ss_pred             cCcchhHHHHHHHhCcCC-CcEEEEEEEE
Confidence            874    78999999986 4678888888

>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*

Probab=99.51  E-value=2.8e-14  Score=141.33  Aligned_cols=139  Identities=13%  Similarity=0.086  Sum_probs=100.0

Q ss_pred             CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+. +++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+.                .+.
T Consensus        17 ~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-e~~~----------------~l~   63 (218)
T 1vfr_A           17 KYDPSKKVSQEDLAVLLEA----------------LRLSASSINSQPWKFIVIESD-AAKQ----------------RMH   63 (218)
T ss_dssp             SBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECSH-HHHH----------------HHH
T ss_pred             hcCCCCCCCHHHHHHHHHH----------------HHhCcccCCCCCeEEEEecCH-HHHH----------------HHH
Confidence            466 689999999999998                588999999999999887542 2111                121


Q ss_pred             cCCchh-ccccccCCCCcEEEEEeeechhHH-H---------------------hh------------hchhhhHHHHHH
Q 006333          224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREA-W---------------------KY------------GERAFRYCNHDV  268 (650)
Q Consensus       224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~-~---------------------KY------------g~rayR~~~lDa  268 (650)
                      +.-... ...+..+.+++.+|+++++..+.. +                     .|            +++.+.+...|+
T Consensus        64 ~~~~~~~~~~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  143 (218)
T 1vfr_A           64 DSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQA  143 (218)
T ss_dssp             HTTSSSCGGGTHHHHHSSEEEEEEEESCCCHHHHHHHHHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHH
T ss_pred             HHhccchhcCchhhcCCCEEEEEEECCcccHHHHHHHHHHHHhhcccchHHHHHHhhHHHHHHHhcCCHHHHHHHHHHHH
Confidence            110000 001223457788888888753210 0                     00            112345677899


Q ss_pred             HHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          269 GHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       269 G~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++||++|+|+++|||+||+++|+++.++++|||+.+.+.++++++|
T Consensus       144 g~a~~nl~LaA~~~Glgs~~~~~~~~~~v~~~l~lp~~~~~~~~~i~l  191 (218)
T 1vfr_A          144 YLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGYECHVALAI  191 (218)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTTTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCCcccccccCHHHHHHHhCCCcccceEEEEEEe
Confidence            999999999999999999999999999999999999445678888888

>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}

Probab=99.49  E-value=6.8e-14  Score=138.77  Aligned_cols=141  Identities=13%  Similarity=-0.033  Sum_probs=101.8

Q ss_pred             hhhhhccC----CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          137 LYSSLFTS----LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       137 ~~~~l~~~----~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      +.+.+..|    .+.++ +|+.++|..||++                .|.+||++|+|||++||+... +.+.   .++.
T Consensus        15 ~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~-~~~~---~l~~   74 (210)
T 2r01_A           15 LRELVARSRSIRRFDEHVAVNDATLRDLVEL----------------VCYTPSAANRQLLRFLPVTGA-DMSD---KVFP   74 (210)
T ss_dssp             HHHHHHHCCBCCCBCTTSCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEEEHH-HHHH---TTGG
T ss_pred             HHHHHHhCceeeccCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCEEEEEEECH-HHHH---HHHH
Confidence            44455443    46787 9999999999998                588999999999999988653 2121   1222


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCc-EEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNS-FLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE  290 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~-~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~  290 (650)
                      +......+   .    .  ..+..+.++| ++|+++++....         ++..+|+|+++||++|+|+++||++||++
T Consensus        75 ~~~~~~~~---~----~--~~~~~~~~ap~~~ivv~~~~~~~---------~~~~~d~g~a~~nl~LaA~~lGlgs~~~~  136 (210)
T 2r01_A           75 CLKWAGYL---E----D--WPGPEPGERPAAALVMLCRNEDL---------PGAACDSGIAAQTIMLGAAEKELGGCIVA  136 (210)
T ss_dssp             GBCCCTTC---T----T--CCSCCTTSSCSEEEEEEEEGGGG---------GGTHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred             HHhhhhhh---h----h--hcccchhcCCcEEEEEEecCccC---------cchHHHHHHHHHHHHHHHHHCCCCEeeEc
Confidence            11111100   0    0  0123355676 778888775431         24678999999999999999999999999


Q ss_pred             ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 ~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +|+++.++++|||+.. +.++++++|
T Consensus       137 ~~~~~~~~~~l~lp~~-~~~~~~i~l  161 (210)
T 2r01_A          137 AIDRERLMASLGIPDA-WTVLLVIAL  161 (210)
T ss_dssp             CBCHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred             ccCHHHHHHHcCcCCC-ceEEEEEEE
Confidence            9999999999999854 568888888

>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0

Probab=99.49  E-value=1.9e-14  Score=142.57  Aligned_cols=136  Identities=18%  Similarity=0.109  Sum_probs=101.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.++|.+||+.                .|.+||++|++||+++|+... +.                +..+.
T Consensus        15 R~f~~~~v~~e~l~~il~~----------------a~~aPs~~n~qpw~~~vv~~~-~~----------------~~~l~   61 (209)
T 3of4_A           15 ADFSGAHITDDVLDKLLNT----------------TRLTASSYGLQPYCTLVIRNK-GL----------------REQLV   61 (209)
T ss_dssp             SSBCSCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECCH-HH----------------HHHHH
T ss_pred             HhcCCCCCCHHHHHHHHHH----------------HHHCcCcCCCCCeEEEEEcCH-HH----------------HHHHH
Confidence            3467899999999999998                588999999999999887642 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHH---Hhhhc------------------------------hhhhHHHHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREA---WKYGE------------------------------RAFRYCNHDVGH  270 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~---~KYg~------------------------------rayR~~~lDaG~  270 (650)
                      ....    .+..+.+||++|+++++.....   .+|-+                              ....+...|+|+
T Consensus        62 ~~~~----~~~~~~~Ap~~iv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~  137 (209)
T 3of4_A           62 NHSF----GQQKVADSSALVIFAAKTGAVADIVDPYISELSQQRQLTNEEAENTRNYFTQKLQAMSAATRKEWAVRQAYI  137 (209)
T ss_dssp             HTTT----TCTHHHHSSEEEEEEEECSCTHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHhc----CCcccCCCCeEEEEEecccccHhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            2110    1234568999999988754321   12211                              122456789999


Q ss_pred             HHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          271 AIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       271 ~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++||++|+|+++||++||+++|+.+.++++|||+...+.++++++|
T Consensus       138 a~~nl~LaA~~~Glgsc~i~g~~~~~v~~~L~lp~~~~~~~~~ial  183 (209)
T 3of4_A          138 GLGTFLLAAAELEVDSCPMEGIEHDAYDNILSLKDLGLSTVFACPV  183 (209)
T ss_dssp             HHHHHHHHHHHTTCEECCBCCSCHHHHHHHTTHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHHHcCCCeeeecccCHHHHHHHhCCCCCCceEEEEEEe
Confidence            9999999999999999999999999999999998634678888888

>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}

Probab=99.49  E-value=4.7e-14  Score=140.56  Aligned_cols=136  Identities=14%  Similarity=0.134  Sum_probs=100.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... +.                +..+.+
T Consensus        24 ~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~-~~----------------~~~l~~   70 (224)
T 2hay_A           24 VYKEEKISDEDLALILDA----------------AWLSPSSIGLEGWRFVVLDNK-PI----------------KEEIKP   70 (224)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEEECCH-HH----------------HHHHGG
T ss_pred             ccCCCCCCHHHHHHHHHH----------------HHhCccccCCCCeEEEEECCH-HH----------------HHHHHH
Confidence            467889999999999998                588999999999999887653 11                112222


Q ss_pred             CCchhccccccCCCCcEEEEEeeechh---HH--H--------------------------------hhhchhhhHHHHH
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWR---EA--W--------------------------------KYGERAFRYCNHD  267 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r---~~--~--------------------------------KYg~rayR~~~lD  267 (650)
                      ....   .+..+.+++.+++++++...   ..  .                                .+.++.+.+..+|
T Consensus        71 ~~~~---~~~~~~~a~~~iv~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  147 (224)
T 2hay_A           71 FAWG---AQYQLETASHFILLIAEKHARYDSPAIKNSLLRRGIKEGDGLNSRLKLYESFQKEDMDMADNPRALFDWTAKQ  147 (224)
T ss_dssp             GCTT---CHHHHHHCSEEEEEEEESCCCTTSHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHH
T ss_pred             HHhc---cccccCCCCeEEEEEeccccccCHHHHHHHHHHcCCCChhHHHHHHHHHHHHHhhhhcccCCHHHHHHHHHHH
Confidence            1100   01234567888888877422   00  0                                0123445678899


Q ss_pred             HHHHHHHHHHHHHHcCCceEEecccCHHHHHHHh---C-CCCCCcceeeeccc
Q 006333          268 VGHAIAAVAMAAAELGWDVKILEGMGYKELKKLM---G-LDIFPEFVIPSKPI  316 (650)
Q Consensus       268 aG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lL---g-Ld~~~E~v~~~~~i  316 (650)
                      +|+++||++|+|+++|||+||+++|+++.++++|   | |+.+.+.++++++|
T Consensus       148 ~g~a~~nl~LaA~~~Glgsc~~~~~~~~~v~~~l~~~~~lp~~~~~~~~~i~l  200 (224)
T 2hay_A          148 TYIALGNMMMTAALLGIDTCPIEGFHYDKVNHILAKHNVIDLEKEGIASMLSL  200 (224)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHHTTSSCTTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCcccCCCCcCHHHHHHHHHhcCCCCcccceEEEEEEE
Confidence            9999999999999999999999999999999999   9 98455678888888

>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}

Probab=99.48  E-value=1.6e-13  Score=133.30  Aligned_cols=138  Identities=13%  Similarity=-0.018  Sum_probs=99.9

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeeeEecCCCCchhhh
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+...  .+.|.+  .++.+      +...
T Consensus        18 ~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qpw~f~vv~~~~~~~~l~~--~~~~~------~~~~   73 (189)
T 3pxv_A           18 DFKNEMPSDELLQAIAEA----------------AIQAPSGMNRQAWRVIVVKNKELMQEMEA--EGLAY------LAGM   73 (189)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCBCEEEECCHHHHHHHHH--HHHHH------HHTS
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEcCHHHHHHHHH--HHHHH------HHhc
Confidence            467899999999999998                578999999999999887753  223321  11110      0000


Q ss_pred             ccCCch--h-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc--------
Q 006333          223 AKIPSR--F-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG--------  291 (650)
Q Consensus       223 ~~~~~~--~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~--------  291 (650)
                      ...+..  . ......+.+||++|+++++....         ....+|+|+++||++|+|+++|||+||+++        
T Consensus        74 ~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~---------~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~  144 (189)
T 3pxv_A           74 EDQSSYNRIMERGGRLFYGAPCMIVVPIDPTQY---------GPALVDCGILCQTIALAATSLGIANIMCGYTGLAFASG  144 (189)
T ss_dssp             SSCHHHHHHHHTTSCTTTTCSEEEEEEECGGGH---------HHHHHHHHHHHHHHHHHHHHTTCEEEECGGGGGGGTTS
T ss_pred             ccCcHHHHHHhcccCccCCCCEEEEEEecCCCC---------cchhhhHHHHHHHHHHHHHHCCCceehhccHHHhhccc
Confidence            000000  0 00113578999999999875432         234789999999999999999999999997        


Q ss_pred             cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++.+.++|||+.. +.++++++|
T Consensus       145 ~~~~~~~~~l~lp~~-~~~~~~i~l  168 (189)
T 3pxv_A          145 LRAEEFSKRLGFPEG-YAFGCSVLL  168 (189)
T ss_dssp             TTHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred             cchHHHHHHcCcCCC-cEEEEEEEE
Confidence            789999999999865 568888888

>3bm1_A Protein YDJA, nitroreductase; oxidoreductase; HET: FMN; 2.00A {Escherichia coli} PDB: 3bm2_A

Probab=99.44  E-value=1.5e-13  Score=132.35  Aligned_cols=142  Identities=13%  Similarity=0.080  Sum_probs=99.1

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+.+++++.++|.+||+.                .|.+||++|+|||+++|+... .+.|..  .++.      .... .
T Consensus        15 ~f~~~~v~~e~l~~il~a----------------a~~aPS~~n~qpw~~~vv~~~~~~~l~~--~~~~------~~~~-~   69 (183)
T 3bm1_A           15 RLAEPAPTGEQLQNILRA----------------GMRAPDHKSMQPWHFFVIEGEGRERFSA--VLEQ------GAIA-A   69 (183)
T ss_dssp             CEESCCCCHHHHHHHHHH----------------HTTSCCTTSCCCCEEEEEETHHHHHHHH--HHHH------HHHH-H
T ss_pred             hcCCCCcCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEchhHHHHHHH--HHHH------HHhc-c
Confidence            456789999999999998                588999999999999987664 122211  0110      0000 0


Q ss_pred             cCCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHH
Q 006333          224 KIPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKL  300 (650)
Q Consensus       224 ~~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~l  300 (650)
                      ..+... ...+..+.++|++|+++++.... ++   ..++...+|+|+++||++|+|+++|+|+|++++|  +++.++++
T Consensus        70 ~~~~~~~~~~~~~~~~ap~~i~~~~~~~~~-~~---~~~~~~~~d~g~a~~~l~LaA~~~Glgs~~~~~~~~~~~~~~~~  145 (183)
T 3bm1_A           70 GSDDKAIDKARNAPFRAPLIITVVAKCEEN-HK---VPRWEQEMSAGCAVMAMQMAAVAQGFGGIWRSGALTESPVVREA  145 (183)
T ss_dssp             TCCHHHHHHHHHGGGGSSEEEEEEECCCSC-SS---SCHHHHHHHHHHHHHHHHHHHHTTTCEEEEECCGGGGCHHHHHH
T ss_pred             CCCHHHHHHHHhhhccCCEEEEEEEecCCC-CC---CCcHHHHHHHHHHHHHHHHHHHHCCCceEEeCCCCccCHHHHHH
Confidence            000000 00122456889998888875431 22   2355678999999999999999999999999988  57899999


Q ss_pred             hCCCCCCcceeeeccc
Q 006333          301 MGLDIFPEFVIPSKPI  316 (650)
Q Consensus       301 LgLd~~~E~v~~~~~i  316 (650)
                      |||+.. +.++++++|
T Consensus       146 l~lp~~-~~~~~~i~~  160 (183)
T 3bm1_A          146 FGCREQ-DKIVGFLYL  160 (183)
T ss_dssp             TTCCTT-CEEEEEEEE
T ss_pred             hCCCCC-CEEEEEEEe
Confidence            999854 567777777

>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}

Probab=99.44  E-value=3.9e-13  Score=131.79  Aligned_cols=151  Identities=15%  Similarity=0.069  Sum_probs=102.5

Q ss_pred             hhhhhcc----C-CCCCCCCC-HHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cccCCCCee
Q 006333          137 LYSSLFT----S-LPPPQPLT-VSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ESLCDSPFV  209 (650)
Q Consensus       137 ~~~~l~~----~-~~~~~pl~-~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~gL~~~pGv  209 (650)
                      +.+.+..    | .+.+++++ .++|.+||+.                .|.+||++|++||+++|+.... +.|.+  .+
T Consensus        11 ~~~~i~~RrSvR~~f~~~~v~~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~l~~--~~   72 (197)
T 3k6h_A           11 LLDYLRVRRSTPALQLSEPGPSKGEIEEILRL----------------AVRVPDHGKLAPWRFVVYRGEERVRLSE--AA   72 (197)
T ss_dssp             HHHHHTTCCCCCSTTCBSCCCCHHHHHHHHHH----------------HTCSCCTTSCCCEEEEEEETHHHHHHHH--HH
T ss_pred             HHHHHHhccCCCccccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCcCeEEEEEcchHHHHHHH--HH
Confidence            4455544    3 36688997 9999999998                5889999999999999887641 11110  00


Q ss_pred             eEecCCCCchhhhcc-CCchh-ccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceE
Q 006333          210 AHYAPKEHALELRAK-IPSRF-DLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVK  287 (650)
Q Consensus       210 YhY~p~~h~L~~l~~-~~~~~-~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~  287 (650)
                      ..      .+..... .+... ...+..+.+||++|+++++..+. +++.   .....+|+|+++||++|+|+++|||+|
T Consensus        73 ~~------~~~~~~~~~~~~~~~~~~~~~~~Ap~~ivv~~~~~~~-~~~~---~~~~~~d~g~a~~nl~LaA~~~GLgt~  142 (197)
T 3k6h_A           73 LR------IALEKNPDLDLQQQEAERTRFTRAPVVIAVISTAKPH-FKIP---EWEQVMSAGAVCLNVIFAANASGFAAN  142 (197)
T ss_dssp             HH------HHHHHSSSCCHHHHHHHHTTTTSSSEEEEEEECCCCC-SSSC---HHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HH------HHHhcCCCCCHHHHHHHHhhhhcCCEEEEEEEecCCC-CCCC---HHHHHHHHHHHHHHHHHHHHHCCCceE
Confidence            00      0000000 00000 00134678999999999886432 2221   234678999999999999999999999


Q ss_pred             Eeccc--CHHHHHHHhCCCCCCcceeeeccc
Q 006333          288 ILEGM--GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       288 ~i~~f--~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |++++  .++.++++|||+.. +.++++++|
T Consensus       143 ~~~~~~~~~~~v~~~l~lp~~-~~~~~~i~l  172 (197)
T 3k6h_A          143 WLTEWLAFDPAFLAEIGVSAE-EKVAGYIHI  172 (197)
T ss_dssp             EECCGGGTCHHHHHHHTCCSS-CEEEEEEEE
T ss_pred             EecCccccCHHHHHHhCcCCC-CEEEEEEEE
Confidence            99973  34559999999864 568888888

>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}

Probab=99.42  E-value=3.2e-13  Score=131.06  Aligned_cols=149  Identities=11%  Similarity=0.007  Sum_probs=101.2

Q ss_pred             hhhhhcc----CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeE
Q 006333          137 LYSSLFT----SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAH  211 (650)
Q Consensus       137 ~~~~l~~----~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYh  211 (650)
                      +.+.+..    |.+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... .+.|.+  .++.
T Consensus        10 ~~~~i~~RrS~R~f~~~~v~~e~l~~il~a----------------a~~APS~~n~qpw~f~vv~~~~~~~l~~--~~~~   71 (189)
T 2i7h_A           10 IANVIKERRSVRTFTDKAVEKDLLIELLND----------------ATWAPNHKHREPWNCKLYIGEGRKKLVD--AVLN   71 (189)
T ss_dssp             HHHHHHHCCBCCCCCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEEEGGGHHHHHH--HHHH
T ss_pred             HHHHHHhcccHhhhCCCCcCHHHHHHHHHH----------------HHhCCCCCCcCCeEEEEECcHHHHHHHH--HHHH
Confidence            4445544    3477889999999999998                578999999999999887654 111110  0100


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                      ..      ..... .......+..+.++|++|+++++...  .++   .+...++|+|+++||++|+|+++|||+||+++
T Consensus        72 ~~------~~~~~-~~~~~~~~~~~~~ap~~i~~~~~~~~--~~~---~~~~~~~~~g~a~~nl~LaA~~~Glgs~~~~~  139 (189)
T 2i7h_A           72 SF------TEEER-AKRGKILSDRFLSTPAQIVVYMNEDP--RQI---QRDEDYAATCAFMQNFQLLAWERGLGCVWKSG  139 (189)
T ss_dssp             TS------CHHHH-HHHHHHHHHHHHTSSEEEEEEEECCS--SHH---HHHHHHHHHHHHHHHHHHHHHHTTEEEEEECS
T ss_pred             HH------hccCc-hHHHHHHHhHHhcCCEEEEEEEecCC--CCC---chHHHHHHHHHHHHHHHHHHHHCCCeeEEecC
Confidence            00      00000 00000011235688999988887432  111   24467789999999999999999999999986


Q ss_pred             -c-CHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 -M-GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 -f-~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                       | +++.++++|||+. .+.++++++|
T Consensus       140 ~~~~~~~~~~~l~lp~-~~~~~~~i~l  165 (189)
T 2i7h_A          140 GLNYNPLFIEGIGLTR-GQRIVGILHI  165 (189)
T ss_dssp             GGGGCHHHHHHTTCCT-TEEEEEEEEE
T ss_pred             CccCCHHHHHHhCcCC-CCeEEEEEEE
Confidence             6 6789999999985 4567888888

>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*

Probab=99.42  E-value=1.5e-13  Score=135.86  Aligned_cols=140  Identities=20%  Similarity=0.157  Sum_probs=98.8

Q ss_pred             CCCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          144 SLPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       144 ~~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      |.+. +++|+.++|.+||+.                .|.+||++|+|||+++|+... +.+                ..+
T Consensus        14 R~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~~~vv~~~-e~~----------------~~l   60 (217)
T 1icr_A           14 KAFDASKKLTPEQAEQIKTL----------------LQYSPSSTNSQPWHFIVASTE-EGK----------------ARV   60 (217)
T ss_dssp             SCBCTTCCCCHHHHHHHHHH----------------HHHCCCGGGCCCEEEEEECSH-HHH----------------HHH
T ss_pred             HhcCCCCCCCHHHHHHHHHH----------------HHHCccccCCCCeEEEEeCCH-HHH----------------HHH
Confidence            3467 689999999999998                588999999999999887542 211                112


Q ss_pred             ccCCchhc-cccccCCCCcEEEEEeeechhHH-H-h--------h--------------------------hchhhhHHH
Q 006333          223 AKIPSRFD-LFNNFFPKNSFLVGFSSIFWREA-W-K--------Y--------------------------GERAFRYCN  265 (650)
Q Consensus       223 ~~~~~~~~-~~~~~~~~a~~~iv~ta~~~r~~-~-K--------Y--------------------------g~rayR~~~  265 (650)
                      .+.-.... ..+..+.+++.+|+++++..+.. | +        .                          .+..+.+..
T Consensus        61 ~~~~~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~~~~~~~~~~~~~~~~~  140 (217)
T 1icr_A           61 AKSAAGNYVFNERKMLDASHVVVFCAKTAMDDVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMA  140 (217)
T ss_dssp             HTTSCGGGGGGHHHHHHSSEEEEEEEESSCCHHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHhhhhhhcChhhhcCCCeEEEEEeCCccchHHHHHHHHHHHhhccCCHHHHHHHHHhhHHHHHHHhcCCHHHHHHHHH
Confidence            21110000 01123457788888888753200 0 0        0                          112334567


Q ss_pred             HHHHHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          266 HDVGHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       266 lDaG~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .|+|+++||++|+|+++|||+|++++|+++.++++|||+.+.+.++++++|
T Consensus       141 ~~~g~a~~~l~LaA~~~Glgsc~~~~~~~~~v~~~l~lp~~~~~~~~~i~l  191 (217)
T 1icr_A          141 KQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPV  191 (217)
T ss_dssp             HHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHHTHHHHTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccccCcCHHHHHHHhCCCccCCceEEEEEe
Confidence            899999999999999999999999999999999999998334567788888

>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}

Probab=99.42  E-value=9.5e-13  Score=127.98  Aligned_cols=143  Identities=13%  Similarity=0.075  Sum_probs=100.1

Q ss_pred             hhhhhcc----CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCeee
Q 006333          137 LYSSLFT----SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFVA  210 (650)
Q Consensus       137 ~~~~l~~----~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGvY  210 (650)
                      +++.+..    |.+.+++|+.++|.+||+.                .|.+||++|++||+++|+...  .+.|.+  .+.
T Consensus         7 ~~~~i~~RrSiR~f~~~~v~~e~l~~il~a----------------a~~APs~~n~qpw~f~vv~~~~~~~~l~~--~~~   68 (190)
T 3ek3_A            7 VLETIKARRSVRAYDRKQIPADDLNAILEA----------------GAYAPSGMHYETWHFTAVCNTVKLEELNE--RIK   68 (190)
T ss_dssp             HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCCEEEEECCHHHHHHHHH--HHH
T ss_pred             HHHHHHhchhhhcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCeEEEEEECHHHHHHHHH--HHH
Confidence            4444444    3467899999999999998                588999999999999887653  122211  000


Q ss_pred             EecCCCCchhhhccCCchh---ccc--cccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCc
Q 006333          211 HYAPKEHALELRAKIPSRF---DLF--NNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWD  285 (650)
Q Consensus       211 hY~p~~h~L~~l~~~~~~~---~~~--~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~  285 (650)
                      .      .+.  ...+...   ...  ...+.+||++|+++++..          .++..+|+|+++||++|+|+++|||
T Consensus        69 ~------~~~--~~~~~~~~~~~~~~~~~~~~~Ap~~i~~~~~~~----------~~~~~~d~g~a~~nl~LaA~~~Glg  130 (190)
T 3ek3_A           69 G------AFA--KSDDKHLRERGHSETYCCYYHAPTLVIVSNEPK----------QWWAGMDCACAIENMFLAATSLGIA  130 (190)
T ss_dssp             H------HHH--TCCCHHHHHHHTCSSCCTTTTCSEEEEEEECSS----------STTHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             H------HHH--hcccHHHHHHhhccccchhcCCCeEEEEEecCC----------CCccHhHHHHHHHHHHHHHHHCCCc
Confidence            0      000  0000000   000  124678999999988743          2567899999999999999999999


Q ss_pred             eEEeccc----CHHH---HHHHhCCCCCCcceeeeccc
Q 006333          286 VKILEGM----GYKE---LKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       286 ~~~i~~f----~d~~---l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +||++++    +++.   +.++|||+.. +.++++++|
T Consensus       131 s~~~~~~~~~~~~~~~~~~~~~l~lp~~-~~~~~~l~l  167 (190)
T 3ek3_A          131 SCWINQLGTTCDDPEVRAYLTSLGVPEN-HKVYGCVAL  167 (190)
T ss_dssp             EEEECTTTTTTTSHHHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred             eEEeccchhhccChhHHHHHHHcCCCCC-cEEEEEEEE
Confidence            9999974    5554   8999999764 578888888

>3gb5_A IYD-1, iodotyrosine dehalogenase 1; iodide salvage, flavoprotein, FMN, membrane, NADP, oxidoreductase, transmembrane; HET: FMN; 2.00A {Mus musculus} PDB: 3gfd_A* 3gh8_A* 3tnz_A* 3to0_A*

Probab=99.40  E-value=3.8e-13  Score=137.77  Aligned_cols=159  Identities=13%  Similarity=0.179  Sum_probs=101.9

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC--ccccCCCCee
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA--IESLCDSPFV  209 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~--v~gL~~~pGv  209 (650)
                      .+++.+..|    .+.+++|+.++|.+||+.                .|.+||++|++||+++|+...  .+.|..  .+
T Consensus        56 ~~~e~i~~RRSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~fivv~~~~~~~~l~~--~~  117 (259)
T 3gb5_A           56 EFYELLNKRRSVRFISSEHVPMEVIENVIKA----------------AGTAPSGAHTEPWTFVVVKDPDMKHKIRE--II  117 (259)
T ss_dssp             HHHHHHHTCCCCSCBCCCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEECCHHHHHHHHH--HH
T ss_pred             HHHHHHHHCcchhhcCCCCCCHHHHHHHHHH----------------HHHCCCcCCCCCeEEEEEeCHHHHHHHHH--HH
Confidence            344555543    467899999999999998                588999999999999888753  122221  00


Q ss_pred             e-----EecCCCC-ch-hhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhch-hhhHHHHHHHHHHHHHHHHHHH
Q 006333          210 A-----HYAPKEH-AL-ELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER-AFRYCNHDVGHAIAAVAMAAAE  281 (650)
Q Consensus       210 Y-----hY~p~~h-~L-~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r-ayR~~~lDaG~~~q~l~LaA~a  281 (650)
                      .     .|..... .. ..+....  ....+.++.+||++|+++++..+.. ..|.+ ...+..+|+|+++|||+|+|++
T Consensus       118 ~~~~~~~~~~~~g~~~~~~l~~~~--~~~~~~~~~~AP~lIvv~~~~~~~~-~~g~~~~~~~~~~dagiA~~nllLAA~a  194 (259)
T 3gb5_A          118 EEEEEINYMKRMGKRWVTDLKKLR--TNWIKEYLDTAPVLILIFKQVHGFA-ANGKKKVHYYNEISVSIACGLLLAALQN  194 (259)
T ss_dssp             HHTCCC------------------------CTHHHHSSEEEEEEEEC--------------CHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhhhhhhhcchhhHHHHHHHH--HHHhhHHhcCCCEEEEEEEeccccc-ccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence            0     0100000 00 0000000  0001234568999999998754321 22332 2346788999999999999999


Q ss_pred             cCCceEEecccCH-HHHHHHhCCCCCCcceeeeccc
Q 006333          282 LGWDVKILEGMGY-KELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       282 lGl~~~~i~~f~d-~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +|||+|++++|+. +.++++|||+.. +.++++++|
T Consensus       195 lGLGs~~~g~~~~~~~vr~~LglPe~-~~~v~~iai  229 (259)
T 3gb5_A          195 AGLVTVTTTPLNCGPRLRVLLGRPSH-EKLLVLLPV  229 (259)
T ss_dssp             TTCBCCCBCCGGGHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             CCCeEEEecCcCcHHHHHHhcCcCCC-CEEEEEEEe
Confidence            9999999999986 899999999875 578888888

>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}

Probab=99.39  E-value=5.4e-13  Score=133.84  Aligned_cols=154  Identities=19%  Similarity=0.221  Sum_probs=103.6

Q ss_pred             hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cc----cC---
Q 006333          137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ES----LC---  204 (650)
Q Consensus       137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~g----L~---  204 (650)
                      +.+.+..|    .+.++||+.++|.+||+.                .|.+||++|+|||+++|+.... ..    +.   
T Consensus         9 ~~~~i~~RRSvR~f~~~pV~~e~l~~il~a----------------A~~APS~~N~Qpw~fiVv~~~~~~~l~~~~~~~~   72 (230)
T 3gr3_A            9 IFQSILSRKSIRAFTDQPVTQETIREILKL----------------AARAPSGTNLQPWQVIVLTGKILQKVGQELSQLV   72 (230)
T ss_dssp             HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCCEEEEECHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCeehhccCCCCCCHHHHHHHHHH----------------HHhCcCcCCCCCeEEEEEeChHHHHHHHHHHHHH
Confidence            44555443    467899999999999998                5889999999999999886531 00    10   


Q ss_pred             -CC-C--eeeEecCCCCc--h-hhhc----------cCCchh--c-----cccccCCCCcEEEEEeeechhHHHhhhchh
Q 006333          205 -DS-P--FVAHYAPKEHA--L-ELRA----------KIPSRF--D-----LFNNFFPKNSFLVGFSSIFWREAWKYGERA  260 (650)
Q Consensus       205 -~~-p--GvYhY~p~~h~--L-~~l~----------~~~~~~--~-----~~~~~~~~a~~~iv~ta~~~r~~~KYg~ra  260 (650)
                       .+ +  ..|.|.+..+.  + ....          .+....  .     ..+..+.+||++|+++++-..         
T Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~AP~~i~v~~~~~~---------  143 (230)
T 3gr3_A           73 LSGIKGEREYHYYPRQWREPYLSRRRKVGLDLYKSLGIQKGDQEKMLHQKAKNFLFYGAPVGLLFTIDHDM---------  143 (230)
T ss_dssp             HTTCCCCCSSCCSCSSCCTTHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHGGGGGGCSEEEEEEEETTC---------
T ss_pred             hcCCCccccccccchhhhHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhhhhcCCCEEEEEEecCCc---------
Confidence             00 0  12222222111  0 0000          000000  0     001135689999999886321         


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHcCCceEEecccC--HHHHHHHhCCCCCCcceeeeccc
Q 006333          261 FRYCNHDVGHAIAAVAMAAAELGWDVKILEGMG--YKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       261 yR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~--d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      -.+.++|+|+++||++|+|+++|||+||+++|+  ++.++++|||+.. +.++++++|
T Consensus       144 ~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~~~~~~~~~~~~~l~lp~~-~~~~~~i~l  200 (230)
T 3gr3_A          144 EMGSWLDLGMFMQTIMLAARGFGLDTCAQAAFADYHKQIRSLLSVPSD-RHIICGMAL  200 (230)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHTTTCEEEEEGGGGGGHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred             cchHHHHHHHHHHHHHHHHHHCCCceeeecccccchHHHHHHcCcCCC-ceEEEEEEE
Confidence            145679999999999999999999999999998  7999999999864 578888888

>2wqf_A Copper induced nitroreductase D; COPR regulated protein, oxidoreductase; HET: FMN; 1.35A {Lactococcus lactis}

Probab=99.39  E-value=1.2e-12  Score=127.84  Aligned_cols=148  Identities=12%  Similarity=-0.033  Sum_probs=98.5

Q ss_pred             CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccc-cccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          145 LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSL-RVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       145 ~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~-R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      .+.++ + +.++|.+||+.                . |.+||++|+|||+++|+...  .+.   .++.. ...+.+..+
T Consensus        15 ~f~~~~~-~~e~l~~il~a----------------a~~~APS~~n~Qpw~f~vv~~~--~~~---~l~~~-~~~~~~~~~   71 (202)
T 2wqf_A           15 ALGRNVQ-DEEKVIETIKE----------------AVRFSPTAFNSQTGRLLILTGD--AQD---KLWDE-IVAPELKAA   71 (202)
T ss_dssp             CEECCCS-CHHHHHHHHHH----------------HHHTSCCGGGCCCEEEEEEEHH--HHH---HHHHH-THHHHHHHH
T ss_pred             hcCCCCC-CHHHHHHHHHH----------------HHHhCCCccCCCCeEEEEEECh--HHH---HHHHH-HHHHHHhhc
Confidence            45666 8 99999999998                5 78999999999999888653  121   11110 000111100


Q ss_pred             c--c-CCchhc----cccccCCCCcEEEEEeeechhH------HHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333          223 A--K-IPSRFD----LFNNFFPKNSFLVGFSSIFWRE------AWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL  289 (650)
Q Consensus       223 ~--~-~~~~~~----~~~~~~~~a~~~iv~ta~~~r~------~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i  289 (650)
                      .  . .+....    .....+..++..++++......      ..+|+++..++..+|+|+++|||+|+|+++|||+|++
T Consensus        72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~  151 (202)
T 2wqf_A           72 MEAQGVPESAWDNTRAKLDGFKAAFGTILFFEDQAVVKNLQEQFALYADNFPVWSEQGSGIISVNVWTALAELGLGANLQ  151 (202)
T ss_dssp             HHC------------CHHHHHHTSSEEEEEEEEHHHHHHHHHHTGGGTTHHHHHHHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred             cccccCCHHHHHhhHHHHHHHHhcCCeEEEEeCchHHHHHHhhccchhhcchhhhHHHHHHHHHHHHHHHHHCCCccchh
Confidence            0  0 000000    0000123566666666654322      2346666678889999999999999999999999999


Q ss_pred             c--ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          290 E--GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       290 ~--~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +  +|+++.++++|||+. .+.++++++|
T Consensus       152 ~~~~~~~~~~~~~l~lp~-~~~~~~~i~l  179 (202)
T 2wqf_A          152 HYNPLIDEAVAKEWNLPE-SWKLRGQLVF  179 (202)
T ss_dssp             CCTTTTHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred             hcCcccHHHHHHHhCcCc-cceEEEEEEe
Confidence            8  788999999999985 4567788888

>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2

Probab=99.39  E-value=1.4e-12  Score=130.29  Aligned_cols=86  Identities=3%  Similarity=-0.101  Sum_probs=66.1

Q ss_pred             cchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCccccc-ccCCCCCCcceEEEEEeCCccccCCCCee
Q 006333          135 APLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLR-VNPSSGNLHPTEAYIIAPAIESLCDSPFV  209 (650)
Q Consensus       135 ~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R-~~PSaG~l~P~e~Yvv~~~v~gL~~~pGv  209 (650)
                      ..+.+.+..|    .+.+++|+.++|.+||+.                .| .+||    +          |.   .  ++
T Consensus        13 ~~~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~r~APS----~----------v~---~--~l   57 (218)
T 1vkw_A           13 MNIFEAIENRHSVRDFLERKMPERVKDDIENL----------------LVKFITK----K----------LD---W--KI   57 (218)
T ss_dssp             CCHHHHHHHCCBCCCBCCSCCCHHHHHHHHHC----------------CCCCSSC----C----------CC---C--EE
T ss_pred             HHHHHHHHhCccccccCCCCCCHHHHHHHHHH----------------HHHhCCH----H----------HH---h--ce
Confidence            3455555543    467899999999999987                45 8999    1          11   1  22


Q ss_pred             eEecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333          210 AHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL  289 (650)
Q Consensus       210 YhY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i  289 (650)
                                               .+.+||++|+++++..+           ....|+|+++||++|+|+++|||+||+
T Consensus        58 -------------------------~~~~Ap~~ivv~~~~~~-----------~~~~d~g~a~~nl~LaA~~lGlgtcw~  101 (218)
T 1vkw_A           58 -------------------------NLSSFPSYIYAKAEKHF-----------DELVEYGFQGEQIVLFLTAQGFGTCWM  101 (218)
T ss_dssp             -------------------------ECSSSSEEEECCCCSSH-----------HHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             -------------------------eeCCCCEEEEEEEeCCc-----------ChHHHHHHHHHHHHHHHHHCCCcEEEe
Confidence                                     25688999999887431           345899999999999999999999999


Q ss_pred             cc
Q 006333          290 EG  291 (650)
Q Consensus       290 ~~  291 (650)
                      ++
T Consensus       102 ~~  103 (218)
T 1vkw_A          102 AR  103 (218)
T ss_dssp             SC
T ss_pred             cc
Confidence            98

>2ifa_A Hypothetical protein SMU.260; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: FMN; 2.30A {Streptococcus mutans} SCOP: d.90.1.1

Probab=99.37  E-value=9.6e-13  Score=129.48  Aligned_cols=145  Identities=14%  Similarity=0.062  Sum_probs=100.5

Q ss_pred             CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccc-cccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhh
Q 006333          145 LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSL-RVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       145 ~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~-R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      .+.++ +|+.++|.+||+.                . |.+||++|+|||+++|+... +...    .  +++  .....+
T Consensus        16 ~f~~~~~v~~e~l~~il~a----------------a~~~APS~~n~Qpw~f~vv~~~-~~~~----~--~~~--~~~~~l   70 (208)
T 2ifa_A           16 ALGKTVDLSKAELVALIQN----------------AIKQAPSAFNSQTSRALVLFGQ-DSQD----F--WNK--IAYSEL   70 (208)
T ss_dssp             CEESCCSSCHHHHHHHHHH----------------HHHTSCCGGGCCCEEEEEEEHH-HHHH----H--HHT--HHHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHhcCCCccccCCeEEEEEECH-HHHH----H--HHH--HHHHHH
Confidence            46677 9999999999998                5 78999999999999887653 1110    0  000  000011


Q ss_pred             ccCCchhcccc------ccCCCCcEEEEEeeechhH------HHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec
Q 006333          223 AKIPSRFDLFN------NFFPKNSFLVGFSSIFWRE------AWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE  290 (650)
Q Consensus       223 ~~~~~~~~~~~------~~~~~a~~~iv~ta~~~r~------~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~  290 (650)
                      ........ +.      ..+..++.+|+++++....      ...|+++..++..+|+|+++||++|+|+++|||+||++
T Consensus        71 ~~~~~~~~-~~~~~~~~~~~~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~g~a~~nl~LaA~~~Glgs~~~~  149 (208)
T 2ifa_A           71 EKVTPAEA-FAGTKAKLESFAAGVGTILLFEDQAVVRNLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQH  149 (208)
T ss_dssp             HTTSCHHH-HHHHHHHHHHHHTSSEEEEEEEEHHHHHHHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBC
T ss_pred             hhcCChhh-hhhhhHHHHHHhhcceEEEEEecHHHHHHHHHhCcccccccchhHHHHHHHHHHHHHHHHHHCCCccchhc
Confidence            11100000 00      1245788888888875432      12355555577889999999999999999999999887


Q ss_pred             --ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 --GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 --~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                        +|+++.++++|||+.. +.++++++|
T Consensus       150 ~~~~~~~~v~~~l~lp~~-~~~~~~i~l  176 (208)
T 2ifa_A          150 YNPLVDAQVAEKYDLPTN-WKMRAQIPF  176 (208)
T ss_dssp             CTTTTHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             ccccchHHHHHHcCCCcc-ceEEEEEEe
Confidence              6789999999999854 567788888

>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*

Probab=99.33  E-value=2.6e-12  Score=128.61  Aligned_cols=151  Identities=10%  Similarity=-0.002  Sum_probs=99.8

Q ss_pred             hhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCC-ccccCCCCeeeE
Q 006333          137 LYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPA-IESLCDSPFVAH  211 (650)
Q Consensus       137 ~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~-v~gL~~~pGvYh  211 (650)
                      +.+.+..|    .+.+++|+.++|.+||+.                .|.+||++|+|||+++|+... .+.|..  .++.
T Consensus        19 ~~~~i~~RrSvR~f~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~~~~~l~~--~~~~   80 (235)
T 2wzv_A           19 AERLIKGRRAVRAFRPDEVPEETMRAVFEL----------------AGHAPSNSNTQPWHVEVVSGAARDRLAE--ALVT   80 (235)
T ss_dssp             HHHHHHHCCBCCCBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCCEEEEECHHHHHHHHH--HHHH
T ss_pred             HHHHHHhCceecCCCCCCCCHHHHHHHHHH----------------HHhCCcccCCCCcEEEEecCHHHHHHHH--HHHH
Confidence            34445443    467889999999999998                588999999999999887643 122211  1211


Q ss_pred             ec---C-CCCchhhhc---------------------cCCch--h---ccc-cc-cCCCCcEEEEEeeechhHHHhhhch
Q 006333          212 YA---P-KEHALELRA---------------------KIPSR--F---DLF-NN-FFPKNSFLVGFSSIFWREAWKYGER  259 (650)
Q Consensus       212 Y~---p-~~h~L~~l~---------------------~~~~~--~---~~~-~~-~~~~a~~~iv~ta~~~r~~~KYg~r  259 (650)
                      ..   + ..+-+....                     .....  .   ... .. .+.++|++|++++....        
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ap~~i~~~~~~~~--------  152 (235)
T 2wzv_A           81 AHAEERVTVDFPYREGLFQGVLQERRADFGSRLYAALGIARDQTDLLQGYNTESLRFYGAPHVAMLFAPNNT--------  152 (235)
T ss_dssp             HHHTTCCBCSSCCCTTSSCHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHTGGGCSEEEEEEEETTC--------
T ss_pred             HHHhcccCccccccccccchHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHhhcceecCCCEEEEEecCccc--------
Confidence            00   0 001000000                     00000  0   000 01 24578888888776321        


Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHHHHHHHhCCCCCCcceeeeccc
Q 006333          260 AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       260 ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                       ..+..+|+|+++||++|+|+++|||+||++++  +++.++++|||  +.+.++++++|
T Consensus       153 -~~~~~~d~g~a~~nl~LaA~~~Glgsc~~~~~~~~~~~v~~~L~l--~~~~~~~~i~l  208 (235)
T 2wzv_A          153 -EARIAGDMGIYAQTLMLAMTAHGIASCPQALLSFYADTVRAELGV--ENRKLLMGISF  208 (235)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGBHHHHHHHHTC--CSEEEEEEEEE
T ss_pred             -ccccHHHHHHHHHHHHHHHHHCCCccchhhhhccchHHHHHHcCC--CCcceEEEEEe
Confidence             24578999999999999999999999999986  78999999999  45678888888

>1ywq_A Nitroreductase family protein; FMN, structu genomics, PSI, protein structure initiative, midwest center structural genomics, MCSG; HET: FMN; 2.30A {Bacillus cereus atcc 14579} SCOP: d.90.1.1

Probab=99.29  E-value=6.3e-12  Score=122.48  Aligned_cols=155  Identities=12%  Similarity=0.037  Sum_probs=100.1

Q ss_pred             hhhhhccC----CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          137 LYSSLFTS----LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       137 ~~~~l~~~----~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      +.+.+..|    .+.++ +|+.++|.+||+.                .|.+||++|+|||+++|+...  .+.   .++.
T Consensus         8 ~~~~i~~RrSvR~f~~~~~v~~e~l~~il~a----------------a~~APS~~n~Qpw~f~vv~~~--~~~---~l~~   66 (200)
T 1ywq_A            8 LKEAIVNRRSIRKVTKNDAITKERIEEVLKT----------------ALHAPTSFNMQSGRMVVLMDG--EHE---KFWD   66 (200)
T ss_dssp             HHHHHHHCCCCCCEECCTTSCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEEEHH--HHH---HHHH
T ss_pred             HHHHHHhhhhHHhhCCCCCCCHHHHHHHHHH----------------HHhCCCCCCCCCeEEEEEeCH--HHH---HHHH
Confidence            44555443    35676 9999999999998                588999999999999887653  121   1111


Q ss_pred             ecCCCCchhhhccCC-ch--hccccccCCCCcEEEEEeeechhHH------HhhhchhhhHHHHHHHHHHHHHHHHHHHc
Q 006333          212 YAPKEHALELRAKIP-SR--FDLFNNFFPKNSFLVGFSSIFWREA------WKYGERAFRYCNHDVGHAIAAVAMAAAEL  282 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~-~~--~~~~~~~~~~a~~~iv~ta~~~r~~------~KYg~rayR~~~lDaG~~~q~l~LaA~al  282 (650)
                      .  ..+.+..+.... ..  ...++. +..++.++++.+......      ..|+++..++..+|+|+++||++|+|+++
T Consensus        67 ~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~~l~LaA~~~  143 (200)
T 1ywq_A           67 I--VKETLRARVPAENFEATVERLKG-FHAGVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTVWMLLSAE  143 (200)
T ss_dssp             H--HHHHHHHHSCHHHHHHHHGGGHH-HHTSSEEEEEEEEHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHhcCChhhhhhhHHHHHH-HhhcceEEEEecCchHHHHHHHhCccccccccchHHHhhHHHHHHHHHHHHHC
Confidence            0  001111111000 00  000111 224555555655543211      12445555678899999999999999999


Q ss_pred             CCceEEec--ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          283 GWDVKILE--GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       283 Gl~~~~i~--~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |||+|+++  ++.++.++++|||+.. +.++++++|
T Consensus       144 Glgs~~~~~~~~~~~~~~~~l~lp~~-~~~~~~i~l  178 (200)
T 1ywq_A          144 GIGASLQHYNPIVDAEVKETWNIPAE-WSLVGQMPF  178 (200)
T ss_dssp             TCEECCBCCTTTTHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             CCccchhhcccccHHHHHHHhCCCCC-ceEEEEEEe
Confidence            99999876  6788999999999854 567788888

>1vkw_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI, oxidoreductase; 2.00A {Thermotoga maritima} SCOP: d.90.1.2

Probab=99.20  E-value=4.2e-11  Score=119.54  Aligned_cols=109  Identities=14%  Similarity=0.006  Sum_probs=84.3

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc-cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL-PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~-Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      ..++.++|++|||+|+|++ ++|+.++|.+||+++. -.              |.         +       |+      
T Consensus        12 ~~~~~~~i~~RrSvR~f~~-~~v~~e~l~~il~aa~r~A--------------PS---------~-------v~------   54 (218)
T 1vkw_A           12 HMNIFEAIENRHSVRDFLE-RKMPERVKDDIENLLVKFI--------------TK---------K-------LD------   54 (218)
T ss_dssp             CCCHHHHHHHCCBCCCBCC-SCCCHHHHHHHHHCCCCCS--------------SC---------C-------CC------
T ss_pred             HHHHHHHHHhCccccccCC-CCCCHHHHHHHHHHHHHhC--------------CH---------H-------HH------
Confidence            3579999999999999997 7999999999998774 11              11         0       10      


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW  571 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~  571 (650)
                             +.                            +                 ++.+|+++|+++++...        
T Consensus        55 -------~~----------------------------l-----------------~~~~Ap~~ivv~~~~~~--------   74 (218)
T 1vkw_A           55 -------WK----------------------------I-----------------NLSSFPSYIYAKAEKHF--------   74 (218)
T ss_dssp             -------CE----------------------------E-----------------ECSSSSEEEECCCCSSH--------
T ss_pred             -------hc----------------------------e-----------------eeCCCCEEEEEEEeCCc--------
Confidence                   00                            1                 34567888888777431        


Q ss_pred             cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCc
Q 006333          572 MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVD  634 (650)
Q Consensus       572 ~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d  634 (650)
                         ....++|+++|||+|+|+++|||+||+|+ ..            ++.+++.++||||.++
T Consensus        75 ---~~~~d~g~a~~nl~LaA~~lGlgtcw~~~-~~------------~~~~~~~i~lGyp~~~  121 (218)
T 1vkw_A           75 ---DELVEYGFQGEQIVLFLTAQGFGTCWMAR-SP------------HPDVPYIIVFGYPRTR  121 (218)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHTTCEEEEESC-CS------------STTCSCEEEEECBSCC
T ss_pred             ---ChHHHHHHHHHHHHHHHHHCCCcEEEecc-CC------------CceEEEEEEEeccCCc
Confidence               23589999999999999999999999998 32            3468999999999875

>2ymv_A ACG nitroreductase; oxidoreductase, dormancy, reduced FMN; HET: MSE FNR PGE; 1.60A {Mycobacterium smegmatis}

Probab=97.31  E-value=0.00033  Score=73.81  Aligned_cols=68  Identities=15%  Similarity=0.046  Sum_probs=56.0

Q ss_pred             CCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH-----HHHHHHhCCCCCCcce
Q 006333          236 FPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY-----KELKKLMGLDIFPEFV  310 (650)
Q Consensus       236 ~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d-----~~l~~lLgLd~~~E~v  310 (650)
                      +.+++.++++++.-.          -+..++|+|.++|+++|+|+++||++|+++.+.+     +.|+++||++.   .+
T Consensus       230 ~~~ap~~~vl~~~~d----------~~~~~~d~G~a~q~~lLaAt~~GL~t~~~~~~~e~~~~~~~vr~~lg~p~---~~  296 (330)
T 2ymv_A          230 NNDAATIVVLSTDGY----------SREDALDAGEGLSKVLLECTMSGLATCPVTHVTELHTSRDIIGRLIVRDA---CP  296 (330)
T ss_dssp             SSCCCEEEEEEESCC----------SHHHHHHHHHHHHHHHHHHHHTTCEEEEECGGGSSHHHHHHHHTTSSTTC---EE
T ss_pred             ccCCCeEEEEEeCCC----------CHHHHHHHHHHHHHHHHHHHHCChhhccchhhhhhhHHHHHHHHHhCCCC---ce
Confidence            457888888887622          3467899999999999999999999999998664     78999999973   36


Q ss_pred             eeeccc
Q 006333          311 IPSKPI  316 (650)
Q Consensus       311 ~~~~~i  316 (650)
                      +.++.|
T Consensus       297 ~~~i~l  302 (330)
T 2ymv_A          297 QVLVRI  302 (330)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            777777

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	650
d1ykia1	216	d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitr	0.002

>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]} Length = 216

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Oxygen-insensitive NAD(P)H nitroreductase
species: Escherichia coli, minor form, NfnB [TaxId: 562]

 Score = 38.0 bits (87), Expect = 0.002
 Identities = 31/233 (13%), Positives = 57/233 (24%), Gaps = 38/233 (16%)

Query: 416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCLPSGSRSREKQKRQLALPYRVLSWDAEV 475
           +  V  KR S    D    +  E   QI                                
Sbjct: 2   IISVALKRHSTKAFDASKKLTPEQAEQI-------------------------------K 30

Query: 476 HAALFIHRVKGLPKGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQ 535
               +           + +   E+    + K+    +V+ + +       +   A+    
Sbjct: 31  TLLQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDASHVVVFCAKTAMD 90

Query: 536 QLAKGLSCHQDIAGDGC-------FSLGMVAHFEPTLSNKNVWMYPRLFWETGVLGQVLY 588
            +   L   Q+ A            +      F              +  +  +      
Sbjct: 91  DVWLKLVVDQEDADGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFL 150

Query: 589 LEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLP 641
           L   A+G+ A  I  F    +    GL    + SL    VG   V+    +LP
Sbjct: 151 LGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLP 203

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	650
d1noxa_	200	NADH oxidase {Thermus thermophilus, HB8 [TaxId: 27	99.82
d1f5va_	240	Oxygen-insensitive NAD(P)H nitroreductase {Escheri	99.82
d1zcha1	249	Hypothetical oxidoreductase YcnD {Bacillus subtili	99.8
d1bkja_	239	Flavin reductase P (NADPH:FMN oxidoreductase) {Vib	99.8
d2b67a1	201	Hypothetical oxidoreductase SP0622 {Streptococcus	99.79
d2frea1	200	NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacteri	99.79
d1ykia1	216	Oxygen-insensitive NAD(P)H nitroreductase {Escheri	99.78
d1vfra_	217	Flavin reductase P (NADPH:FMN oxidoreductase) {Vib	99.76
d1ywqa1	199	Hypothetical oxidoreductase BC1844 {Bacillus cereu	99.73
d2ifaa1	199	Hypothetical protein Smu.260 {Streptococcus mutans	99.7
d2frea1	200	NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacteri	99.5
d1noxa_	200	NADH oxidase {Thermus thermophilus, HB8 [TaxId: 27	99.46
d1f5va_	240	Oxygen-insensitive NAD(P)H nitroreductase {Escheri	99.46
d1zcha1	249	Hypothetical oxidoreductase YcnD {Bacillus subtili	99.41
d1bkja_	239	Flavin reductase P (NADPH:FMN oxidoreductase) {Vib	99.4
d1ykia1	216	Oxygen-insensitive NAD(P)H nitroreductase {Escheri	99.38
d2b67a1	201	Hypothetical oxidoreductase SP0622 {Streptococcus	99.34
d1vfra_	217	Flavin reductase P (NADPH:FMN oxidoreductase) {Vib	99.3
d1vkwa_	217	Putative nitroreductase TM1586 {Thermotoga maritim	99.29
d2ifaa1	199	Hypothetical protein Smu.260 {Streptococcus mutans	99.11
d1ywqa1	199	Hypothetical oxidoreductase BC1844 {Bacillus cereu	99.06
d1vkwa_	217	Putative nitroreductase TM1586 {Thermotoga maritim	98.12

>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: NADH oxidase
species: Thermus thermophilus, HB8 [TaxId: 274]

Probab=99.82  E-value=3.4e-20  Score=179.62  Aligned_cols=155  Identities=19%  Similarity=0.188  Sum_probs=112.7

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      .|++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.        
T Consensus         2 ~Md~~~~i~~RrSvR~f~~-~~V~~e~i~~il~aa~~aPS~~---------n~qp~~~----------~vv~--------   53 (200)
T d1noxa_           2 VLDAKTAALKRRSIRRYRK-DPVPEGLLREILEAALRAPSAW---------NLQPWRI----------VVVR--------   53 (200)
T ss_dssp             CCCHHHHHHHCCCCCCBCS-CCCCHHHHHHHHHHHTTCCCGG---------GCCCEEE----------EEEC--------
T ss_pred             CccHHHHHHHCCcccCCCc-CCCCHHHHHHHHHHHHhCcCcc---------CCCceeE----------EEEe--------
Confidence            4789999999999999998 7999999999999997  8865         5799983          4443        


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhh-----
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTL-----  565 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~-----  565 (650)
                            +.+.++.|.+.                                  +..|....+++..+.+.++.....     
T Consensus        54 ------~~~~~~~l~~~----------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (200)
T d1noxa_          54 ------DPATKRALREA----------------------------------AFGQAHVEEAPVVLVLYADLEDALAHLDE   93 (200)
T ss_dssp             ------CHHHHHHHHHH----------------------------------TTTCTHHHHSSEEEEEEECHHHHHHTGGG
T ss_pred             ------cchHHHHHHHH----------------------------------HhhhhhhhcCCceEEeecchHHHHHHHHH
Confidence                  23333444332                                  111222222333333333322111     


Q ss_pred             -----------------------hccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceE
Q 006333          566 -----------------------SNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQS  622 (650)
Q Consensus       566 -----------------------~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~  622 (650)
                                             ..+....++....++|+++|+++|+|+++|||+|++++|+.++|+++|||++ ++.+
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~n~~Laa~s~Glgs~~~~~~~~~~l~~~l~ip~-~~~~  172 (200)
T d1noxa_          94 VIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLLLLLEAYGLGSVPMLGFDPERVRAILGLPS-RAAI  172 (200)
T ss_dssp             TSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCSCHHHHHHHHTCCT-TCEE
T ss_pred             HHhhcchhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCeecccccCHHHHHHHcCCCC-CCEE
Confidence                                   1112233455678999999999999999999999999999999999999997 6799


Q ss_pred             EEEEEccccCCcCc
Q 006333          623 LYHFTVGGPVVDRR  636 (650)
Q Consensus       623 ly~~avG~p~~d~r  636 (650)
                      ++.++||||.++..
T Consensus       173 v~~i~iGyp~~~~~  186 (200)
T d1noxa_         173 PALVALGYPAEEGY  186 (200)
T ss_dssp             EEEEEEESBSSCCC
T ss_pred             EEEEEEECcCCCCC
Confidence            99999999988764

>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Oxygen-insensitive NAD(P)H nitroreductase
species: Escherichia coli, major form, NfsA [TaxId: 562]

Probab=99.82  E-value=3.8e-20  Score=185.52  Aligned_cols=154  Identities=16%  Similarity=0.140  Sum_probs=121.7

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|.+|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.          
T Consensus         3 ~~ie~i~~RRSvR~F~~-~~V~~e~l~~il~aA~~APS~~---------N~Qpw~~----------ivV~----------   52 (240)
T d1f5va_           3 PTIELICGHRSIRHFTD-EPISEAQREAIINSARATSSSS---------FLQCSSI----------IRIT----------   52 (240)
T ss_dssp             HHHHHHHTCCBCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC----------
T ss_pred             HHHHHHHHCcCCccCCC-CCCCHHHHHHHHHHHHHCcCcc---------cCCCceE----------EEEe----------
Confidence            46789999999999998 7999999999999997  8865         5799983          3432          


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc-
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW-  571 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~-  571 (650)
                          +.+.                                  ++.+..++.+|.+..+++..++++++..+........ 
T Consensus        53 ----d~e~----------------------------------~~~la~~~~~~~~~~~a~~~~v~~~d~~~~~~~~~~~~   94 (240)
T d1f5va_          53 ----DKAL----------------------------------REELVTLTGGQKHVAQAAEFWVFCADFNRHLQICPDAQ   94 (240)
T ss_dssp             ----CHHH----------------------------------HHHHHHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTCC
T ss_pred             ----CCcc----------------------------------chhhHhhhhhhHHHHhCcceEEEecchhhhhhhhhhhc
Confidence                2222                                  2223334557888888999999999987654432221 


Q ss_pred             -----cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcCcc
Q 006333          572 -----MYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI  637 (650)
Q Consensus       572 -----~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~  637 (650)
                           .......|||+++||++|+|+++|||+||||++  +.++|+++||||+ ++.+++.++||+|.++...
T Consensus        95 ~~~~~~~~~~~~Dag~a~qn~~LaA~slGLGs~~ig~~~~~~~~v~~~L~lP~-~~~~v~~l~lGyP~~~~~~  166 (240)
T d1f5va_          95 LGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIEAVTKLLKLPQ-HVLPLFGLCLGWPADNPDL  166 (240)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBCCCCCC
T ss_pred             cccchhhHHHHHHHHHHHHHHHHHHHHcCCCeEeeccccccHHHHHHHhCCCC-CcEEEEEEeeeccCCCCCc
Confidence                 233557899999999999999999999999999  5579999999998 6789999999999987654

>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase YcnD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.80  E-value=1.6e-19  Score=181.93  Aligned_cols=154  Identities=16%  Similarity=0.134  Sum_probs=120.0

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLY  492 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY  492 (650)
                      ++.++|++|||+|+|++ ++|+.++|.+||+++.  ||+.         +.|||++          ++|.          
T Consensus         3 d~ie~i~~RRSiR~F~~-~pV~~e~i~~il~aA~~APS~~---------N~Qpw~~----------ivV~----------   52 (249)
T d1zcha1           3 EVIKSLTDHRSIRSYTD-EPVAQEQLDQIIEAVQSAPSSI---------NGQQVTV----------ITVQ----------   52 (249)
T ss_dssp             HHHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHHSCCGG---------GCCCEEE----------EEEC----------
T ss_pred             HHHHHHHHCcccccCCC-CCCCHHHHHHHHHHHHhCcCcc---------cCCCeEE----------EEEe----------
Confidence            47789999999999998 8999999999999997  8865         5799983          4443          


Q ss_pred             eecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc----
Q 006333          493 FLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK----  568 (650)
Q Consensus       493 ~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y----  568 (650)
                          +.+.+                                  +.+..++.+|.+..+++..+++++++.+.....    
T Consensus        53 ----d~e~~----------------------------------~~l~~~~~~~~~~~~ap~~~v~~~d~~r~~~~~~~~~   94 (249)
T d1zcha1          53 ----DKERK----------------------------------KKISELAGGQPWIDQAPVFLLFCADFNRAKIALEDLH   94 (249)
T ss_dssp             ----CHHHH----------------------------------HHHHHHTTCCHHHHHSSEEEEEEEECHHHHHHHHHHH
T ss_pred             ----cchHH----------------------------------HHHHHHhccCcccccCceEEEEeechhhhhhhhhhhh
Confidence                22222                                  223334446778888999999999877643211    


Q ss_pred             --------ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCcc--chHHHHhHhCCCCCCceEEEEEEccccCCcCcc
Q 006333          569 --------NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCF--FDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI  637 (650)
Q Consensus       569 --------g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f--~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~  637 (650)
                              +.........|+|+++||++|+|+++|||+||||++  +.++|+++||||+ ++.+++.++||||.++...
T Consensus        95 ~~~~~~~~~~~~~~~~~~dag~a~qn~~LaA~alGLGs~~ig~~~~~~~~v~~~L~lP~-~~~~v~~l~vGyP~~~~~~  172 (249)
T d1zcha1          95 DFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAVRGNPQELIELLELPK-YVFPLSGLVIGHPADRSAK  172 (249)
T ss_dssp             CCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGSSHHHHHHHTTCCT-TEEEEEEEEEECBSCCCCC
T ss_pred             hhhhhhhcchhhhhhHHHHHHHHHHHHHHHHHHcCCceeeecCcccCHHHHHHHhCcCC-CeEEEEEEeeecCCCCCCC
Confidence                    111223567899999999999999999999999985  5679999999997 6789999999999987654

>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Flavin reductase P (NADPH:FMN oxidoreductase)
species: Vibrio harveyi [TaxId: 669]

Probab=99.80  E-value=1.9e-19  Score=180.18  Aligned_cols=153  Identities=17%  Similarity=0.203  Sum_probs=119.0

Q ss_pred             HHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCeeee
Q 006333          416 VREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGLYF  493 (650)
Q Consensus       416 l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~GlY~  493 (650)
                      ..++|.+|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.           
T Consensus         3 tie~i~~RRSiR~F~~-~~V~~e~l~~il~aA~~APS~~---------N~Qpw~~----------ivv~-----------   51 (239)
T d1bkja_           3 TIETILAHRSIRKFTA-VPITDEQRQTIIQAGLAASSSS---------MLQVVSI----------VRVT-----------   51 (239)
T ss_dssp             HHHHHHTCCCCCCBCS-CCCCHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EECC-----------
T ss_pred             HHHHHHHCcCccCCCC-CCCCHHHHHHHHHHHHhCCCcc---------ccCCeEE----------EEEe-----------
Confidence            4589999999999998 7999999999999997  8865         5799983          4432           


Q ss_pred             ecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhccccc--
Q 006333          494 LVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNVW--  571 (650)
Q Consensus       494 y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~~--  571 (650)
                         +.+.++                                  .+..++.+|.+..+++..++++++..+........  
T Consensus        52 ---d~e~~~----------------------------------~la~~~~~~~~~~~a~~~~v~~~d~~~~~~~~~~~~~   94 (239)
T d1bkja_          52 ---DSEKRN----------------------------------ELAQFAGNQAYVESAAEFLVFCIDYQRHATINPDVQA   94 (239)
T ss_dssp             ---CHHHHH----------------------------------HHHHHTTSCTHHHHSSEEEEEEEECHHHHHHCTTCCC
T ss_pred             ---cCchHH----------------------------------HHHHHhhhhhhhhcCCceEEEEeecccccccchhhcc
Confidence               222222                                  22233446777888899999999877654332111  


Q ss_pred             ----cchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccch--HHHHhHhCCCCCCceEEEEEEccccCCcCcc
Q 006333          572 ----MYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFD--DPVHEVLGLTGSKFQSLYHFTVGGPVVDRRI  637 (650)
Q Consensus       572 ----~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~d--d~v~e~LgL~~~~~~~ly~~avG~p~~d~r~  637 (650)
                          .......|+|+++|+++|+|+++|||+|+||++..  ++|+++||||+ ++.+++.++||||.++...
T Consensus        95 ~~~~~~~~~~~dag~a~qn~~LaA~slGLGs~~ig~~~~~~~~v~~~L~lP~-~~~~v~~l~iGyP~~~~~~  165 (239)
T d1bkja_          95 DFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAAQVDELLGLPE-NSAVLFGMCLGHPDQNPEV  165 (239)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHTTCCT-TEEEEEEEEEECBSCCCCC
T ss_pred             cchhhhHHHHHHHHHHHHHHHHHHHHhCCCeEeeccccccHHHHHHHcCCCC-CcEEEEEEEeecCCCCCCc
Confidence                12345689999999999999999999999999864  68999999998 5789999999999988754

>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase SP0622
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.79  E-value=1.8e-19  Score=174.87  Aligned_cols=180  Identities=17%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      |++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         |.|||++          ++|.+        
T Consensus         1 M~~~e~i~~RRSvR~f~~-~~v~~e~i~~il~aa~~aPS~~---------n~qp~~~----------~vv~~--------   52 (201)
T d2b67a1           1 MKFLELNKKRHATKHFTD-KLVDPKDVRTAIEIATLAPSAH---------NSQPWKF----------VVVRE--------   52 (201)
T ss_dssp             CHHHHHHHHCCBCCCBCS-CCCCHHHHHHHHHHHTTSCCGG---------GCCCEEE----------EEESS--------
T ss_pred             CCHHHHHHHCCCccccCC-CCCCHHHHHHHHHHHHhCcCcc---------cCcceeE----------EEecc--------
Confidence            578899999999999998 7999999999999997  8865         5799993          44431        


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcc---cccccccCceEEEEeeecchhhhcc
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSC---HQDIAGDGCFSLGMVAHFEPTLSNK  568 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~---~Q~~~~~aa~~l~~~a~~~~~~~~y  568 (650)
                            .+.  +++.. .-...++++..++.  .+......+.......+..   ...+... ....+ ..........+
T Consensus        53 ------~~~--~~~~~-~~~~~~~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~  119 (201)
T d2b67a1          53 ------KNA--ELAKL-AYGSNFEQVSSAPV--TIALFTDTDLAKRARKIARVGGANNFSEE-QLQYF-MKNLPAEFARY  119 (201)
T ss_dssp             ------SHH--HHHTT-BCTTHHHHHHHSSE--EEEEEEESCHHHHHHHHHHHHGGGTCCHH-HHHHH-HTHHHHHHHTC
T ss_pred             ------hhH--HHHHH-HHHhhhhhhccCce--EEEEEccccHHHHHHHHHHHhhhccccHH-HHHHH-Hhhcchhhccc
Confidence                  111  11100 00000000000100  0001111122111111110   0000000 00000 00000001111


Q ss_pred             c-cccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 N-VWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 g-~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      + ...+++..+++|+++|+++|+|+++|||+|+++||+.++|+++|||++ ++++++.++||||.++.
T Consensus       120 ~~~~~~~~~~~~~g~a~~~~~Laa~a~Glgs~~~~~~~~~~v~~~l~lp~-~~~~~~~l~~Gyp~~~~  186 (201)
T d2b67a1         120 SEQQVSDYLALNAGLVAMNLVLALTDQGIGSNIILGFDKSKVNEVLEIED-RFRPELLITVGYTDEKL  186 (201)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCT-TEEEEEEEEEECBSSCC
T ss_pred             chhhhhHHHHHhhhhhhhHHHHHHHHHhcCeeeecccCHHHHHHHhCCCC-CCEEEEEEEEECcCCCC
Confidence            1 224556788999999999999999999999999999999999999997 67999999999998764

>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: NAD(P)H-flavin oxidoreductase Atu0013
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.79  E-value=2.2e-19  Score=174.15  Aligned_cols=157  Identities=20%  Similarity=0.255  Sum_probs=118.8

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      ++++.++|++|||+|+|++ ++|+.++|.+||+++.  ||++         +.|||++          ++|.+-      
T Consensus        10 ~~pi~e~i~~RrSvR~f~~-~~I~~e~l~~il~aa~~APs~~---------n~qp~~~----------~vv~~~------   63 (200)
T d2frea1          10 EYPVDPLFLDRWSPRAFDG-SPMPKEHLLTILDAAHWAPSAS---------NHQPWRF----------VYAHKD------   63 (200)
T ss_dssp             SSCCCTHHHHCCCCCCBCC-CCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEETT------
T ss_pred             CccHHHHHHHCCChhhcCC-CCCCHHHHHHHHHHHHHhcchh---------cCCCcEE----------EEEech------
Confidence            3568889999999999998 7999999999999987  8864         5799983          344321      


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcccc
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNKNV  570 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~yg~  570 (650)
                              .....+...                    ....           ..|.+...+++.++++++.......+..
T Consensus        64 --------~~~~~~~~~--------------------~~~~-----------~~~~~~~~a~~~~~~~~~~~~~~~~~~~  104 (200)
T d2frea1          64 --------SEDWPLFVE--------------------LLME-----------GNQKWAKNASVLLFVISRDHTISHEGEK  104 (200)
T ss_dssp             --------STTHHHHHH--------------------TBCH-----------HHHHHHTTSSEEEEEEEESEEECTTCCE
T ss_pred             --------hHHHHHHHh--------------------hhhh-----------ccchhhhhhhhheeeeeehhhhhhhccc
Confidence                    111111110                    0001           1234455678888888776555545444


Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                      ...+....++|+++|+++|+|+++|||+||||+|+.+.|+++|||++ ++.+++.++||||.+..
T Consensus       105 ~~~~~~~~~~g~a~~n~~Laa~~lGlgt~~~~~~~~~~v~~~L~lp~-~~~~~~~l~vGy~~~~~  168 (200)
T d2frea1         105 KPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGGIFKDRIVEKLDIPD-GFKVEAGVAIGTLTDKS  168 (200)
T ss_dssp             EECSSHHHHHHHHHHHHHHHHHHTTCEEEEECCBCHHHHHHHTTCCT-TEEEEEEEEEECBCCGG
T ss_pred             cchhHHHHHHHHHHhhHHHHHHHhhhccEeEcccchHHHHHHhCCCC-CcEEEEEEEEeeeCCcc
Confidence            45567789999999999999999999999999999999999999997 67999999999997654

>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Oxygen-insensitive NAD(P)H nitroreductase
species: Escherichia coli, minor form, NfnB [TaxId: 562]

Probab=99.78  E-value=2e-19  Score=175.20  Aligned_cols=71  Identities=21%  Similarity=0.156  Sum_probs=62.7

Q ss_pred             ccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCccccCC
Q 006333          571 WMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRRIMSLP  641 (650)
Q Consensus       571 ~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r~~~~~  641 (650)
                      ..++.+..++|+.+|+|+|+|+++|||+|+||||+.+.++++||++++++.+++.++|||+.++......|
T Consensus       133 ~~~~~~~~~~g~~~~~l~LaA~a~Glgt~~~~~~~~~~~~~~l~i~~~~~~~~~~i~vGy~~~~~~~~~~~  203 (216)
T d1ykia1         133 DDAEWMAKQVYLNVGNFLLGVAALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPVGHHSVEDFNATLP  203 (216)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCSCHHHHHHHHTHHHHTEEEEEEEEEECBCTTCGGGSSC
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHcCCCcccccccCHHHHHHHhCCCCCCeEEEEEEEEECcCCcccCCCCC
Confidence            34567789999999999999999999999999999999999999997667899999999999887554443

>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Flavin reductase P (NADPH:FMN oxidoreductase)
species: Vibrio fischeri [TaxId: 668]

Probab=99.76  E-value=2.3e-18  Score=167.78  Aligned_cols=162  Identities=8%  Similarity=0.022  Sum_probs=111.6

Q ss_pred             CcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          414 FTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       414 ~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      .++.++|++|||+|+|+..++|+.++|.+||+++.  ||+.         |.|||++          ++|.         
T Consensus         2 ~~~~~~i~~RrSvR~fd~~~~V~~e~i~~il~aa~~APS~~---------N~Qpw~~----------~vv~---------   53 (217)
T d1vfra_           2 HPIIHDLENRYTSKKYDPSKKVSQEDLAVLLEALRLSASSI---------NSQPWKF----------IVIE---------   53 (217)
T ss_dssp             CHHHHHHHHCCBCSSBCTTCCCCHHHHHHHHHHHHTCCCGG---------GCCCEEE----------EEEC---------
T ss_pred             hHHHHHHHhCccccCcCCCCCCCHHHHHHHHHHHHhCCCcC---------CCCCcee----------eecC---------
Confidence            36889999999999998647999999999999987  8865         5799993          4544         


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchh-------
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPT-------  564 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~-------  564 (650)
                           +.+..++|.+.+.....                             ..+....+++..+.+.+.....       
T Consensus        54 -----~~~~~~~l~~~~~~~~~-----------------------------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   99 (217)
T d1vfra_          54 -----SDAAKQRMHDSFANMHQ-----------------------------FNQPHIKACSHVILFANKLSYTRDDYDVV   99 (217)
T ss_dssp             -----SHHHHHHHHHTTSSSCG-----------------------------GGTHHHHHSSEEEEEEEESCCCHHHHHHH
T ss_pred             -----CHHHHHHHHHHHHhhhh-----------------------------hccccccCcchhhhhhhhhhhhHHHHHHH
Confidence                 23333444432211000                             0111111222222222211100       


Q ss_pred             ---------------------------hhccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCC
Q 006333          565 ---------------------------LSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTG  617 (650)
Q Consensus       565 ---------------------------~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~  617 (650)
                                                 ..............++|+.+|+|+|+|+++|+|+|+|+||+.+++.++||++.
T Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~laA~~~Glgt~~~~~~~~~~~~~~l~~~~  179 (217)
T d1vfra_         100 LSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQAYLALGNALHTLARLNIDSTTMEGIDPELLSEIFADEL  179 (217)
T ss_dssp             HHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTT
T ss_pred             HHHHHhhhcccHHHHHHHHHhhhhhcccccchhhhhHHHHhhhHHHHHHHHHHHHHCCCCcccccCcCHHHHHHHhCCCC
Confidence                                       00011234456788999999999999999999999999999999999999976


Q ss_pred             CCceEEEEEEccccCCcCcc
Q 006333          618 SKFQSLYHFTVGGPVVDRRI  637 (650)
Q Consensus       618 ~~~~~ly~~avG~p~~d~r~  637 (650)
                      +++.+++.++||||.++...
T Consensus       180 ~~~~~~~~l~lGy~~~~~~~  199 (217)
T d1vfra_         180 KGYECHVALAIGYHHPSEDY  199 (217)
T ss_dssp             TTEEEEEEEEEECBCTTTCG
T ss_pred             CCcEEEEEEEeeccCccccc
Confidence            67889999999999887654

>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase BC1844
species: Bacillus cereus [TaxId: 1396]

Probab=99.73  E-value=1.1e-17  Score=161.78  Aligned_cols=172  Identities=14%  Similarity=0.145  Sum_probs=112.7

Q ss_pred             CCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCe
Q 006333          413 GFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKG  490 (650)
Q Consensus       413 ~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~G  490 (650)
                      ..++.++|++|||+|+|+++.+|+.++|.+||+++.  ||++         |.|||+          +++|.+-+.    
T Consensus         4 ~~~~~e~i~~RrSvR~F~~~~~I~~e~l~~il~aa~~APS~~---------n~Qpw~----------~vvv~~~~~----   60 (199)
T d1ywqa1           4 TTNLKEAIVNRRSIRKVTKNDAITKERIEEVLKTALHAPTSF---------NMQSGR----------MVVLMDGEH----   60 (199)
T ss_dssp             TSCHHHHHHHCCCCCCEECCTTSCHHHHHHHHHHHTTSCCGG---------GCCCEE----------EEEEEHHHH----
T ss_pred             hHHHHHHHHHCCcccccCCCCCCCHHHHHHHHHHHHHhcccC---------CCCCeE----------EEEEECHHH----
Confidence            458999999999999998646899999999999997  8865         579999          355543110    


Q ss_pred             eeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchh------
Q 006333          491 LYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPT------  564 (650)
Q Consensus       491 lY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~------  564 (650)
                             ...++.+......                 .+....+.....    .......+...+.+..+....      
T Consensus        61 -------~~~~~~~~~~~~~-----------------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (199)
T d1ywqa1          61 -------EKFWDIVKETLRA-----------------RVPAENFEATVE----RLKGFHAGVGTVLFFEDQATVEKMQEN  112 (199)
T ss_dssp             -------HHHHHHHHHHHHH-----------------HSCHHHHHHHHG----GGHHHHTSSEEEEEEEEHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHh-----------------hCchhhHHHHHH----HHHHHHhCceEEEEEechHHHHHHHHh
Confidence                   0111111111110                 000111111111    111223344455444442211      


Q ss_pred             hhccccccchHHHHHHhHHHHHHHHHHHHcCCCee--eeCccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          565 LSNKNVWMYPRLFWETGVLGQVLYLEAHAVGISAT--GIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       565 ~~~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~--~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                      ...|+.........++|+++|+|+|+|+++|||+|  ++++|+++.|+++||||+ ++.++++++||||.+...
T Consensus       113 ~~~~~~~~~~~~~~~~~~a~~~~~laa~a~glG~~~~~~~~~~~~~v~e~l~iP~-~~~~~~~l~iG~p~~~p~  185 (199)
T d1ywqa1         113 APLYKDQFPFWSHQGNAMLQHTVWMLLSAEGIGASLQHYNPIVDAEVKETWNIPA-EWSLVGQMPFGEPNEQPA  185 (199)
T ss_dssp             CGGGTTTHHHHHHHHHHHHHHHHHHHHHHTTCEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEECSCCC
T ss_pred             hhhhhhcchhhHHHHHHHHHHHHHHHHHhcCCceEeeccCccchHHHHHHhCCCC-CCEEEEEEEEECcCCCCC
Confidence            11223333345678999999999999999999998  578899999999999998 689999999999988763

>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical protein Smu.260
species: Streptococcus mutans [TaxId: 1309]

Probab=99.70  E-value=2.2e-17  Score=159.69  Aligned_cols=170  Identities=12%  Similarity=0.086  Sum_probs=108.1

Q ss_pred             cHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHh-c--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCCCee
Q 006333          415 TVREVVRKRRSAVDMDGVTAIDRETFYQIMLHC-L--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLPKGL  491 (650)
Q Consensus       415 ~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a-~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~~Gl  491 (650)
                      +|.++|++|||+|+|+++.+|+.++|.+||+.| .  ||++         |.|||++          ++|.+        
T Consensus         2 d~~e~i~~RrSvR~f~~~~pV~~e~l~~il~~A~r~APS~~---------N~Qpwrf----------vvv~~--------   54 (199)
T d2ifaa1           2 NFLDLQKQRRSIYALGKTVDLSKAELVALIQNAIKQAPSAF---------NSQTSRA----------LVLFG--------   54 (199)
T ss_dssp             CHHHHHHHCCCCCCEESCCSSCHHHHHHHHHHHHHTSCCGG---------GCCCEEE----------EEEEH--------
T ss_pred             hHHHHHHHCcCccccCCCCCCCHHHHHHHHHHHHhhCCCcC---------CCcceEE----------EEEEC--------
Confidence            688999999999999874589999999999865 3  8865         5799993          55542        


Q ss_pred             eeecCCcchhhHHHHHhhcccccCCCCCCCCCCccccccc-ccHHHHHhhhcccccccccCceEEEEeeecchh---hh-
Q 006333          492 YFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELAR-GDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPT---LS-  566 (650)
Q Consensus       492 Y~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~-gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~---~~-  566 (650)
                            ++..+.+.........+              ... ..+......+    .....+...+++..+....   .. 
T Consensus        55 ------~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  110 (199)
T d2ifaa1          55 ------QDSQDFWNKIAYSELEK--------------VTPAEAFAGTKAKL----ESFAAGVGTILLFEDQAVVRNLEEN  110 (199)
T ss_dssp             ------HHHHHHHHTHHHHHHHT--------------TSCHHHHHHHHHHH----HHHHTSSEEEEEEEEHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHHHHhc--------------cCchhhHHHHHHHH----HHHHhhcceeeEEeccHHHHHHHHh
Confidence                  22111111111100000              000 0111111111    1122345555555543211   11 


Q ss_pred             --ccccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeC--ccchHHHHhHhCCCCCCceEEEEEEccccCCcCc
Q 006333          567 --NKNVWMYPRLFWETGVLGQVLYLEAHAVGISATGIG--CFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDRR  636 (650)
Q Consensus       567 --~yg~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig--~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~r  636 (650)
                        .+..........++|+++|+|+|+|+++|||+|+++  ++++++|+++||||+ ++.++..++||||.+...
T Consensus       111 ~~~~~~~~~~~~~~~~g~a~~n~~Laa~a~Glgs~~~~~~~~~~~~v~~~l~iP~-~~~~~~~l~iGyp~~~~~  183 (199)
T d2ifaa1         111 FPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHYNPLVDAQVAEKYDLPT-NWKMRAQIPFGSIEAPAG  183 (199)
T ss_dssp             CTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEEEEESSCCC
T ss_pred             chhhhcccchhHHHhHHHHHHHHHHHHHHhccCceeeccCccchHHHHHHcCCCC-CCEEEEEEEEECCCCCCC
Confidence              111111123457999999999999999999999975  578899999999997 689999999999987653

>d2frea1 d.90.1.1 (A:1-200) NAD(P)H-flavin oxidoreductase Atu0013 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: NAD(P)H-flavin oxidoreductase Atu0013
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.50  E-value=2.2e-14  Score=138.38  Aligned_cols=146  Identities=15%  Similarity=0.068  Sum_probs=111.9

Q ss_pred             chhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeE
Q 006333          136 PLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAH  211 (650)
Q Consensus       136 ~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYh  211 (650)
                      |+.+.+..|    .|++++|+.++|..||+.                .|.+||+||++||++|++..... ..       
T Consensus        12 pi~e~i~~RrSvR~f~~~~I~~e~l~~il~a----------------a~~APs~~n~qp~~~~vv~~~~~-~~-------   67 (200)
T d2frea1          12 PVDPLFLDRWSPRAFDGSPMPKEHLLTILDA----------------AHWAPSASNHQPWRFVYAHKDSE-DW-------   67 (200)
T ss_dssp             CCCTHHHHCCCCCCBCCCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEEETTST-TH-------
T ss_pred             cHHHHHHHCCChhhcCCCCCCHHHHHHHHHH----------------HHHhcchhcCCCcEEEEEechhH-HH-------
Confidence            444455443    478999999999999988                58899999999999999876411 10       


Q ss_pred             ecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEecc
Q 006333          212 YAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEG  291 (650)
Q Consensus       212 Y~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~  291 (650)
                              .........  ..+.....++.++++++........+..+..++..+|+|+++||++|+|+++||++|++++
T Consensus        68 --------~~~~~~~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~n~~Laa~~lGlgt~~~~~  137 (200)
T d2frea1          68 --------PLFVELLME--GNQKWAKNASVLLFVISRDHTISHEGEKKPSATHSFDAGAAWFSLAMQAHLLGYHAHGMGG  137 (200)
T ss_dssp             --------HHHHHTBCH--HHHHHHTTSSEEEEEEEESEEECTTCCEEECSSHHHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred             --------HHHHhhhhh--ccchhhhhhhhheeeeeehhhhhhhccccchhHHHHHHHHHHhhHHHHHHHhhhccEeEcc
Confidence                    000000000  0122356788888888876666667777788899999999999999999999999999999


Q ss_pred             cCHHHHHHHhCCCCCCcceeeeccc
Q 006333          292 MGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       292 f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+.+.|+++|||+.. +.++++++|
T Consensus       138 ~~~~~v~~~L~lp~~-~~~~~~l~v  161 (200)
T d2frea1         138 IFKDRIVEKLDIPDG-FKVEAGVAI  161 (200)
T ss_dssp             BCHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             cchHHHHHHhCCCCC-cEEEEEEEE
Confidence            999999999999864 667777777

>d1noxa_ d.90.1.1 (A:) NADH oxidase {Thermus thermophilus, HB8 [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: NADH oxidase
species: Thermus thermophilus, HB8 [TaxId: 274]

Probab=99.46  E-value=8e-14  Score=134.05  Aligned_cols=134  Identities=9%  Similarity=0.042  Sum_probs=94.7

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.+++|+.++|..||+.                .+.+||+||++||+++|+.+. +.+.                .+.+
T Consensus        17 ~f~~~~V~~e~i~~il~a----------------a~~aPS~~n~qp~~~~vv~~~-~~~~----------------~l~~   63 (200)
T d1noxa_          17 RYRKDPVPEGLLREILEA----------------ALRAPSAWNLQPWRIVVVRDP-ATKR----------------ALRE   63 (200)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HTTCCCGGGCCCEEEEEECCH-HHHH----------------HHHH
T ss_pred             CCCcCCCCHHHHHHHHHH----------------HHhCcCccCCCceeEEEEecc-hHHH----------------HHHH
Confidence            467899999999999988                588999999999998877542 2111                1111


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhH----------------------------HHhhhchhhhHHHHHHHHHHHHHH
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWRE----------------------------AWKYGERAFRYCNHDVGHAIAAVA  276 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~----------------------------~~KYg~rayR~~~lDaG~~~q~l~  276 (650)
                      ...    .+....+++..+++.++....                            ...|.+...++...|+|+++||++
T Consensus        64 ~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~n~~  139 (200)
T d1noxa_          64 AAF----GQAHVEEAPVVLVLYADLEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQEARKAWASGQSYILLGYLL  139 (200)
T ss_dssp             HTT----TCTHHHHSSEEEEEEECHHHHHHTGGGTSCTTCCTHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHh----hhhhhhcCCceEEeecchHHHHHHHHHHHhhcchhhhHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHH
Confidence            000    001112233333333322111                            122445667788899999999999


Q ss_pred             HHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          277 MAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       277 LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+|+++|+|+|++++|+.+.|+++|||+.. +.+++++++
T Consensus       140 Laa~s~Glgs~~~~~~~~~~l~~~l~ip~~-~~~v~~i~i  178 (200)
T d1noxa_         140 LLLEAYGLGSVPMLGFDPERVRAILGLPSR-AAIPALVAL  178 (200)
T ss_dssp             HHHHHTTCEEEEECCSCHHHHHHHHTCCTT-CEEEEEEEE
T ss_pred             HHHHHcCCCeecccccCHHHHHHHcCCCCC-CEEEEEEEE
Confidence            999999999999999999999999999864 667778888

>d1f5va_ d.90.1.1 (A:) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, major form, NfsA [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Oxygen-insensitive NAD(P)H nitroreductase
species: Escherichia coli, major form, NfsA [TaxId: 562]

Probab=99.46  E-value=8.5e-14  Score=138.69  Aligned_cols=135  Identities=14%  Similarity=0.096  Sum_probs=104.4

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++|+.++|.+||++                .+.+||++|+|||+++||... +.                ...++
T Consensus        15 R~F~~~~V~~e~l~~il~a----------------A~~APS~~N~Qpw~~ivV~d~-e~----------------~~~la   61 (240)
T d1f5va_          15 RHFTDEPISEAQREAIINS----------------ARATSSSSFLQCSSIIRITDK-AL----------------REELV   61 (240)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHH
T ss_pred             ccCCCCCCCHHHHHHHHHH----------------HHHCcCcccCCCceEEEEeCC-cc----------------chhhH
Confidence            3578899999999999998                588999999999998765421 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhch------hhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc--CHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER------AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM--GYK  295 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r------ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f--~d~  295 (650)
                      +...    .+.++.+++.+++++++..|......+.      .+.+..+|+|+++||++|+|+++|||+|++|++  +.+
T Consensus        62 ~~~~----~~~~~~~a~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~Dag~a~qn~~LaA~slGLGs~~ig~~~~~~~  137 (240)
T d1f5va_          62 TLTG----GQKHVAQAAEFWVFCADFNRHLQICPDAQLGLAEQLLLGVVDTAMMAQNALIAAESLGLGGVYIGGLRNNIE  137 (240)
T ss_dssp             HHTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHH
T ss_pred             hhhh----hhHHHHhCcceEEEecchhhhhhhhhhhccccchhhHHHHHHHHHHHHHHHHHHHHcCCCeEeeccccccHH
Confidence            2111    1235668899999999988765444432      456788999999999999999999999999999  558


Q ss_pred             HHHHHhCCCCCCcceeeeccc
Q 006333          296 ELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       296 ~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .|.++|||+.. +.++++++|
T Consensus       138 ~v~~~L~lP~~-~~~v~~l~l  157 (240)
T d1f5va_         138 AVTKLLKLPQH-VLPLFGLCL  157 (240)
T ss_dssp             HHHHHTTCCTT-EEEEEEEEE
T ss_pred             HHHHHhCCCCC-cEEEEEEee
Confidence            99999999875 567778888

>d1zcha1 d.90.1.1 (A:1-249) Hypothetical oxidoreductase YcnD {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase YcnD
species: Bacillus subtilis [TaxId: 1423]

Probab=99.41  E-value=3.1e-13  Score=135.24  Aligned_cols=134  Identities=18%  Similarity=0.221  Sum_probs=102.3

Q ss_pred             CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhcc
Q 006333          145 LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRAK  224 (650)
Q Consensus       145 ~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~~  224 (650)
                      .+.++||+.++|.+||.+                .|.+||++|++||+++||... +..                ..+..
T Consensus        16 ~F~~~pV~~e~i~~il~a----------------A~~APS~~N~Qpw~~ivV~d~-e~~----------------~~l~~   62 (249)
T d1zcha1          16 SYTDEPVAQEQLDQIIEA----------------VQSAPSSINGQQVTVITVQDK-ERK----------------KKISE   62 (249)
T ss_dssp             CBCSCCCCHHHHHHHHHH----------------HHHSCCGGGCCCEEEEEECCH-HHH----------------HHHHH
T ss_pred             cCCCCCCCHHHHHHHHHH----------------HHhCcCcccCCCeEEEEEecc-hHH----------------HHHHH
Confidence            478899999999999998                589999999999998776432 111                12222


Q ss_pred             CCchhccccccCCCCcEEEEEeeechhHHHhh------------hchhhhHHHHHHHHHHHHHHHHHHHcCCceEEeccc
Q 006333          225 IPSRFDLFNNFFPKNSFLVGFSSIFWREAWKY------------GERAFRYCNHDVGHAIAAVAMAAAELGWDVKILEGM  292 (650)
Q Consensus       225 ~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KY------------g~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f  292 (650)
                      ...    .+.+..++|.++++++++.|.....            +...+.+...|+|.++||++|+|+++|||+|++|++
T Consensus        63 ~~~----~~~~~~~ap~~~v~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qn~~LaA~alGLGs~~ig~~  138 (249)
T d1zcha1          63 LAG----GQPWIDQAPVFLLFCADFNRAKIALEDLHDFKMEITNGLESVLVGAVDAGIALGTATAAAESLGLGTVPIGAV  138 (249)
T ss_dssp             HTT----CCHHHHHSSEEEEEEEECHHHHHHHHHHHCCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGG
T ss_pred             Hhc----cCcccccCceEEEEeechhhhhhhhhhhhhhhhhhhcchhhhhhHHHHHHHHHHHHHHHHHHcCCceeeecCc
Confidence            110    1234567899999999987754322            123455788999999999999999999999999984


Q ss_pred             --CHHHHHHHhCCCCCCcceeeeccc
Q 006333          293 --GYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       293 --~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                        +.++|.++|||+.. +.++.+++|
T Consensus       139 ~~~~~~v~~~L~lP~~-~~~v~~l~v  163 (249)
T d1zcha1         139 RGNPQELIELLELPKY-VFPLSGLVI  163 (249)
T ss_dssp             GSSHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             ccCHHHHHHHhCcCCC-eEEEEEEee
Confidence              67899999999864 567778888

>d1bkja_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Flavin reductase P (NADPH:FMN oxidoreductase)
species: Vibrio harveyi [TaxId: 669]

Probab=99.40  E-value=2.4e-13  Score=135.32  Aligned_cols=135  Identities=15%  Similarity=0.094  Sum_probs=103.8

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.|.+++|+.++|.+||..                .+.+||++|++||+++||... +.                +..++
T Consensus        14 R~F~~~~V~~e~l~~il~a----------------A~~APS~~N~Qpw~~ivv~d~-e~----------------~~~la   60 (239)
T d1bkja_          14 RKFTAVPITDEQRQTIIQA----------------GLAASSSSMLQVVSIVRVTDS-EK----------------RNELA   60 (239)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HHTSCCGGGCCCEEEEECCCH-HH----------------HHHHH
T ss_pred             cCCCCCCCCHHHHHHHHHH----------------HHhCCCccccCCeEEEEEecC-ch----------------HHHHH
Confidence            3578899999999999998                589999999999998776432 11                11222


Q ss_pred             cCCchhccccccCCCCcEEEEEeeechhHHHhhhch------hhhHHHHHHHHHHHHHHHHHHHcCCceEEecccCH--H
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGER------AFRYCNHDVGHAIAAVAMAAAELGWDVKILEGMGY--K  295 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~r------ayR~~~lDaG~~~q~l~LaA~alGl~~~~i~~f~d--~  295 (650)
                      +...    .+.+..+++.++++++++.|........      ...+..+|+|.++||++|+|+++|||+|++|++..  +
T Consensus        61 ~~~~----~~~~~~~a~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~dag~a~qn~~LaA~slGLGs~~ig~~~~~~~  136 (239)
T d1bkja_          61 QFAG----NQAYVESAAEFLVFCIDYQRHATINPDVQADFTELTLIGAVDSGIMAQNCLLAAESMGLGGVYIGGLRNSAA  136 (239)
T ss_dssp             HHTT----SCTHHHHSSEEEEEEEECHHHHHHCTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEGGGGGGHH
T ss_pred             HHhh----hhhhhhcCCceEEEEeecccccccchhhcccchhhhHHHHHHHHHHHHHHHHHHHHhCCCeEeeccccccHH
Confidence            2110    1234568899999999988866543332      34567889999999999999999999999999974  7


Q ss_pred             HHHHHhCCCCCCcceeeeccc
Q 006333          296 ELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       296 ~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      .|.++|||+.. +.++.+++|
T Consensus       137 ~v~~~L~lP~~-~~~v~~l~i  156 (239)
T d1bkja_         137 QVDELLGLPEN-SAVLFGMCL  156 (239)
T ss_dssp             HHHHHTTCCTT-EEEEEEEEE
T ss_pred             HHHHHcCCCCC-cEEEEEEEe
Confidence            89999999875 567777778

>d1ykia1 d.90.1.1 (A:2-217) Oxygen-insensitive NAD(P)H nitroreductase {Escherichia coli, minor form, NfnB [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Oxygen-insensitive NAD(P)H nitroreductase
species: Escherichia coli, minor form, NfnB [TaxId: 562]

Probab=99.38  E-value=1.6e-13  Score=132.77  Aligned_cols=153  Identities=16%  Similarity=0.034  Sum_probs=96.2

Q ss_pred             CC-CCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc--cc---cCCC------------
Q 006333          145 LP-PPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI--ES---LCDS------------  206 (650)
Q Consensus       145 ~~-~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v--~g---L~~~------------  206 (650)
                      .+ .++||+.++|.+||+.                .|.+||+||+|||+++|+....  +.   +..+            
T Consensus        14 ~f~~~~~V~~e~l~~il~~----------------a~~aPS~~N~qp~~~~vv~~~~~~~~l~~~~~~~~~~~~~~~~~a   77 (216)
T d1ykia1          14 AFDASKKLTPEQAEQIKTL----------------LQYSPSSTNSQPWHFIVASTEEGKARVAKSAAGNYVFNERKMLDA   77 (216)
T ss_dssp             CBCTTCCCCHHHHHHHHHH----------------HHHCCCGGGCCCEEEEEECSHHHHHHHHTTSCGGGGGGHHHHHHS
T ss_pred             CcCCCCCCCHHHHHHHHHH----------------HHhCcCccCCCCceEEEeccHHHHHHHHHHHHhhhhhhhhhhHhH
Confidence            45 5789999999999987                5889999999999999886541  11   1100            


Q ss_pred             --CeeeEecCCCCchhhhccCCchhccccccCCCCcE----EEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHH
Q 006333          207 --PFVAHYAPKEHALELRAKIPSRFDLFNNFFPKNSF----LVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAA  280 (650)
Q Consensus       207 --pGvYhY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~----~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~  280 (650)
                        ...+.+++..+.+..-.-.....  . ........    ...+...+.....++..+.++++.+|+|+++||++|+|+
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~LaA~  154 (216)
T d1ykia1          78 SHVVVFCAKTAMDDVWLKLVVDQED--A-DGRFATPEAKAANDKGRKFFADMHRKDLHDDAEWMAKQVYLNVGNFLLGVA  154 (216)
T ss_dssp             SEEEEEEEESSCCHHHHHHHHHHHH--H-TTCCSSHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHH--h-hhhccHHHHHHHHHHHHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHH
Confidence              01111111111111000000000  0 00000000    000000111123344456788999999999999999999


Q ss_pred             HcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          281 ELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       281 alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ++|+|+|++++|+.+.++++||++++.+.++++++|
T Consensus       155 a~Glgt~~~~~~~~~~~~~~l~i~~~~~~~~~~i~v  190 (216)
T d1ykia1         155 ALGLDAVPIEGFDAAILDAEFGLKEKGYTSLVVVPV  190 (216)
T ss_dssp             HTTCEECCBCCSCHHHHHHHHTHHHHTEEEEEEEEE
T ss_pred             HcCCCcccccccCHHHHHHHhCCCCCCeEEEEEEEE
Confidence            999999999999999999999999877778888888

>d2b67a1 d.90.1.1 (A:1-201) Hypothetical oxidoreductase SP0622 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase SP0622
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.34  E-value=1.4e-12  Score=125.56  Aligned_cols=135  Identities=9%  Similarity=0.037  Sum_probs=92.3

Q ss_pred             CCCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          144 SLPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       144 ~~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      |.+.+++++.++|.+||+.                .|.+||++|.|||+++|+......+..  ..+.+.          
T Consensus        14 R~f~~~~v~~e~i~~il~a----------------a~~aPS~~n~qp~~~~vv~~~~~~~~~--~~~~~~----------   65 (201)
T d2b67a1          14 KHFTDKLVDPKDVRTAIEI----------------ATLAPSAHNSQPWKFVVVREKNAELAK--LAYGSN----------   65 (201)
T ss_dssp             CCBCSCCCCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEESSSHHHHHT--TBCTTH----------
T ss_pred             cccCCCCCCHHHHHHHHHH----------------HHhCcCcccCcceeEEEecchhHHHHH--HHHHhh----------
Confidence            3478899999999999988                588999999999999887543211110  010000          


Q ss_pred             cCCchhccccccCCCCcEEEEEeeec-------------------------------hhHHHhhhchhhhHHHHHHHHHH
Q 006333          224 KIPSRFDLFNNFFPKNSFLVGFSSIF-------------------------------WREAWKYGERAFRYCNHDVGHAI  272 (650)
Q Consensus       224 ~~~~~~~~~~~~~~~a~~~iv~ta~~-------------------------------~r~~~KYg~rayR~~~lDaG~~~  272 (650)
                               ++.+.+++..+++..+.                               ........+...++..+|+|+++
T Consensus        66 ---------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~  136 (201)
T d2b67a1          66 ---------FEQVSSAPVTIALFTDTDLAKRARKIARVGGANNFSEEQLQYFMKNLPAEFARYSEQQVSDYLALNAGLVA  136 (201)
T ss_dssp             ---------HHHHHHSSEEEEEEEESCHHHHHHHHHHHHGGGTCCHHHHHHHHTHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred             ---------hhhhccCceEEEEEccccHHHHHHHHHHHhhhccccHHHHHHHHhhcchhhcccchhhhhHHHHHhhhhhh
Confidence                     00111222222222111                               11111122346678899999999


Q ss_pred             HHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          273 AAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       273 q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      ||++|+|+++|+|+|++++|+.+.|+++|||+.. +.+++++++
T Consensus       137 ~~~~Laa~a~Glgs~~~~~~~~~~v~~~l~lp~~-~~~~~~l~~  179 (201)
T d2b67a1         137 MNLVLALTDQGIGSNIILGFDKSKVNEVLEIEDR-FRPELLITV  179 (201)
T ss_dssp             HHHHHHHHHTTCEEEEECCBCHHHHHHHHTCCTT-EEEEEEEEE
T ss_pred             hHHHHHHHHHhcCeeeecccCHHHHHHHhCCCCC-CEEEEEEEE
Confidence            9999999999999999999999999999999875 457777777

>d1vfra_ d.90.1.1 (A:) Flavin reductase P (NADPH:FMN oxidoreductase) {Vibrio fischeri [TaxId: 668]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Flavin reductase P (NADPH:FMN oxidoreductase)
species: Vibrio fischeri [TaxId: 668]

Probab=99.30  E-value=1.9e-12  Score=125.13  Aligned_cols=139  Identities=14%  Similarity=0.090  Sum_probs=93.4

Q ss_pred             CC-CCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeeeEecCCCCchhhhc
Q 006333          145 LP-PPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVAHYAPKEHALELRA  223 (650)
Q Consensus       145 ~~-~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvYhY~p~~h~L~~l~  223 (650)
                      .+ +++||+.++|.+||+.                .|.+||++|.|||+++|+... +...                ++.
T Consensus        16 ~fd~~~~V~~e~i~~il~a----------------a~~APS~~N~Qpw~~~vv~~~-~~~~----------------~l~   62 (217)
T d1vfra_          16 KYDPSKKVSQEDLAVLLEA----------------LRLSASSINSQPWKFIVIESD-AAKQ----------------RMH   62 (217)
T ss_dssp             SBCTTCCCCHHHHHHHHHH----------------HHTCCCGGGCCCEEEEEECSH-HHHH----------------HHH
T ss_pred             CcCCCCCCCHHHHHHHHHH----------------HHhCCCcCCCCCceeeecCCH-HHHH----------------HHH
Confidence            45 5789999999999988                588999999999999888654 1100                010


Q ss_pred             cCCch-hccccccCCCCcEEEEEeeechh----------------------------------HHHhhhchhhhHHHHHH
Q 006333          224 KIPSR-FDLFNNFFPKNSFLVGFSSIFWR----------------------------------EAWKYGERAFRYCNHDV  268 (650)
Q Consensus       224 ~~~~~-~~~~~~~~~~a~~~iv~ta~~~r----------------------------------~~~KYg~rayR~~~lDa  268 (650)
                      +.-.. .......+..++..+.+.+....                                  ...+...+...+...++
T Consensus        63 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  142 (217)
T d1vfra_          63 DSFANMHQFNQPHIKACSHVILFANKLSYTRDDYDVVLSKAVADKRITEEQKEAAFASFKFVELNCDENGEHKAWTKPQA  142 (217)
T ss_dssp             HTTSSSCGGGTHHHHHSSEEEEEEEESCCCHHHHHHHHHHHHHTTSSCHHHHHHHGGGGHHHHHTCCTTSCCHHHHHHHH
T ss_pred             HHHHhhhhhccccccCcchhhhhhhhhhhhHHHHHHHHHHHHhhhcccHHHHHHHHHhhhhhcccccchhhhhHHHHhhh
Confidence            00000 00000111223333333221110                                  00112234566788899


Q ss_pred             HHHHHHHHHHHHHcCCceEEecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          269 GHAIAAVAMAAAELGWDVKILEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       269 G~~~q~l~LaA~alGl~~~~i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      |+++||++|+|+++|+|+|++++|+.+.+.++||++++++.+++++++
T Consensus       143 ~~~~~~~~laA~~~Glgt~~~~~~~~~~~~~~l~~~~~~~~~~~~l~l  190 (217)
T d1vfra_         143 YLALGNALHTLARLNIDSTTMEGIDPELLSEIFADELKGYECHVALAI  190 (217)
T ss_dssp             HHHHHHHHHHHHHHTCEEEEECCSCHHHHHHHTTTTTTTEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCCcccccCcCHHHHHHHhCCCCCCcEEEEEEEe
Confidence            999999999999999999999999999999999998877677777777

>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: Putative nitroreductase TM1586
domain: Putative nitroreductase TM1586
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=3.6e-12  Score=124.52  Aligned_cols=111  Identities=14%  Similarity=0.029  Sum_probs=83.1

Q ss_pred             CCCCcHHHHHHhcCCCCCCCCCCCCCHHHHHHHHHHhc--cCCCcchhhhhcccCCCcccccccceEEEEEEEecccCCC
Q 006333          411 YKGFTVREVVRKRRSAVDMDGVTAIDRETFYQIMLHCL--PSGSRSREKQKRQLALPYRVLSWDAEVHAALFIHRVKGLP  488 (650)
Q Consensus       411 ~~~~~l~e~I~~RRS~R~F~~~~~I~~e~l~~iL~~a~--Ps~~~~~~~~g~~~~~P~~~~~~~~~v~l~v~v~rVeGL~  488 (650)
                      ...|++.++|++|||+|+|++ ++|+.+++.+|++++.  |++.         +.++|.                     
T Consensus         9 ~~~M~l~EaI~~RrSvR~y~~-~~V~~e~l~~I~~a~~~a~~~~---------~~~~~~---------------------   57 (217)
T d1vkwa_           9 HHHMNIFEAIENRHSVRDFLE-RKMPERVKDDIENLLVKFITKK---------LDWKIN---------------------   57 (217)
T ss_dssp             CCCCCHHHHHHHCCBCCCBCC-SCCCHHHHHHHHHCCCCCSSCC---------CCCEEE---------------------
T ss_pred             CCCCCHHHHHHhCceeeccCC-CCCCHHHHHHHHHHHHhCccCc---------cCCcee---------------------
Confidence            356899999999999999998 8999999999998775  4322         112221                     


Q ss_pred             CeeeeecCCcchhhHHHHHhhcccccCCCCCCCCCCcccccccccHHHHHhhhcccccccccCceEEEEeeecchhhhcc
Q 006333          489 KGLYFLVRNEDHLGELKKAVRSGFVWEKPEGCPRDLPLYELARGDCQQLAKGLSCHQDIAGDGCFSLGMVAHFEPTLSNK  568 (650)
Q Consensus       489 ~GlY~y~~~~~~l~~L~~~~~~~~~w~~~~~~p~~l~l~~l~~gd~r~~~~~l~~~Q~~~~~aa~~l~~~a~~~~~~~~y  568 (650)
                                                                                 +.+++..|+++++..      
T Consensus        58 -----------------------------------------------------------~~~ap~~Ivv~~~~~------   72 (217)
T d1vkwa_          58 -----------------------------------------------------------LSSFPSYIYAKAEKH------   72 (217)
T ss_dssp             -----------------------------------------------------------CSSSSEEEECCCCSS------
T ss_pred             -----------------------------------------------------------ecCCCEEEEEEEcCC------
Confidence                                                                       123455555554422      


Q ss_pred             ccccchHHHHHHhHHHHHHHHHHHHcCCCeeeeCccchHHHHhHhCCCCCCceEEEEEEccccCCcC
Q 006333          569 NVWMYPRLFWETGVLGQVLYLEAHAVGISATGIGCFFDDPVHEVLGLTGSKFQSLYHFTVGGPVVDR  635 (650)
Q Consensus       569 g~~~Yr~~~~eaG~i~Q~L~LaA~alGlg~~~Ig~f~dd~v~e~LgL~~~~~~~ly~~avG~p~~d~  635 (650)
                           ...+.++|+++|+|+|+|+++|||+||||+++++             .+..+++||||.+..
T Consensus        73 -----~~~~~d~G~a~e~l~L~A~~lGLGTCWig~~~~e-------------~l~~vIaiGYp~~~~  121 (217)
T d1vkwa_          73 -----FDELVEYGFQGEQIVLFLTAQGFGTCWMARSPHP-------------DVPYIIVFGYPRTRN  121 (217)
T ss_dssp             -----HHHHHHHHHHHHHHHHHHHHTTCEEEEESCCSST-------------TCSCEEEEECBSCCC
T ss_pred             -----ccHHHHHHHHHHHHHHHHHHcCCCEEEEeccCcC-------------eEEEEEEeecCCCCC
Confidence                 1246799999999999999999999999987543             356788999997764

>d2ifaa1 d.90.1.1 (A:2-200) Hypothetical protein Smu.260 {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical protein Smu.260
species: Streptococcus mutans [TaxId: 1309]

Probab=99.11  E-value=6.9e-11  Score=113.27  Aligned_cols=146  Identities=13%  Similarity=0.055  Sum_probs=91.8

Q ss_pred             CCCCC-CCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCc-cccCCCCeeeEecCCCCchhhh
Q 006333          145 LPPPQ-PLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAI-ESLCDSPFVAHYAPKEHALELR  222 (650)
Q Consensus       145 ~~~~~-pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v-~gL~~~pGvYhY~p~~h~L~~l  222 (650)
                      .+.++ ||+.++|.+||+.+               .|++||+||+|||+++|+...- ..+-.  .++.        ...
T Consensus        15 ~f~~~~pV~~e~l~~il~~A---------------~r~APS~~N~Qpwrfvvv~~~~~~~~~~--~~~~--------~~~   69 (199)
T d2ifaa1          15 ALGKTVDLSKAELVALIQNA---------------IKQAPSAFNSQTSRALVLFGQDSQDFWN--KIAY--------SEL   69 (199)
T ss_dssp             CEESCCSSCHHHHHHHHHHH---------------HHTSCCGGGCCCEEEEEEEHHHHHHHHH--THHH--------HHH
T ss_pred             ccCCCCCCCHHHHHHHHHHH---------------HhhCCCcCCCcceEEEEEECHHHHHHHH--HHHH--------HHH
Confidence            34444 89999999999862               3889999999999999886421 00000  0000        000


Q ss_pred             ccCCchhcc---cc--ccCCCCcEEEEEeeech-hH-----HHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEec-
Q 006333          223 AKIPSRFDL---FN--NFFPKNSFLVGFSSIFW-RE-----AWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKILE-  290 (650)
Q Consensus       223 ~~~~~~~~~---~~--~~~~~a~~~iv~ta~~~-r~-----~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i~-  290 (650)
                      .........   ..  ..+..++..+++..+.. +.     ...|.+..--+...|+|.++||++|+|+++|||+|+++ 
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~a~~n~~Laa~a~Glgs~~~~~  149 (199)
T d2ifaa1          70 EKVTPAEAFAGTKAKLESFAAGVGTILLFEDQAVVRNLEENFPLYAENFQPWSEQAHGIALYAIWLALAEQNIGMSVQHY  149 (199)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHTSSEEEEEEEEHHHHHHHHHHCTTTGGGHHHHHHHHHHHHHHHHHHHHHHTTEEECCBCC
T ss_pred             hccCchhhHHHHHHHHHHHHhhcceeeEEeccHHHHHHHHhchhhhcccchhHHHhHHHHHHHHHHHHHHhccCceeecc
Confidence            001000000   00  11234555555544422 11     11122222345678999999999999999999999976 


Q ss_pred             -ccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          291 -GMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       291 -~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                       +++++.+.++|||+.+ +.++++++|
T Consensus       150 ~~~~~~~v~~~l~iP~~-~~~~~~l~i  175 (199)
T d2ifaa1         150 NPLVDAQVAEKYDLPTN-WKMRAQIPF  175 (199)
T ss_dssp             TTTTHHHHHHHTTCCTT-EEEEEEEEE
T ss_pred             CccchHHHHHHcCCCCC-CEEEEEEEE
Confidence             5789999999999865 678888888

>d1ywqa1 d.90.1.1 (A:2-200) Hypothetical oxidoreductase BC1844 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: NADH oxidase/flavin reductase
domain: Hypothetical oxidoreductase BC1844
species: Bacillus cereus [TaxId: 1396]

Probab=99.06  E-value=9.9e-11  Score=112.03  Aligned_cols=150  Identities=13%  Similarity=0.070  Sum_probs=99.2

Q ss_pred             chhhhhccC----CCC-CCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCeee
Q 006333          136 PLYSSLFTS----LPP-PQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFVA  210 (650)
Q Consensus       136 ~~~~~l~~~----~~~-~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGvY  210 (650)
                      .+.+.+..|    .|. +.+|+.++|.+||..                .|.+||++|+|||+++|+... + +..     
T Consensus         6 ~~~e~i~~RrSvR~F~~~~~I~~e~l~~il~a----------------a~~APS~~n~Qpw~~vvv~~~-~-~~~-----   62 (199)
T d1ywqa1           6 NLKEAIVNRRSIRKVTKNDAITKERIEEVLKT----------------ALHAPTSFNMQSGRMVVLMDG-E-HEK-----   62 (199)
T ss_dssp             CHHHHHHHCCCCCCEECCTTSCHHHHHHHHHH----------------HTTSCCGGGCCCEEEEEEEHH-H-HHH-----
T ss_pred             HHHHHHHHCCcccccCCCCCCCHHHHHHHHHH----------------HHHhcccCCCCCeEEEEEECH-H-HHH-----
Confidence            445555544    354 568999999999998                588999999999999887653 1 110     


Q ss_pred             EecCCCCchhhhcc-----CCchh-c-cc--cccCCCCcEEEEEeeechhH------HHhhhchhhhHHHHHHHHHHHHH
Q 006333          211 HYAPKEHALELRAK-----IPSRF-D-LF--NNFFPKNSFLVGFSSIFWRE------AWKYGERAFRYCNHDVGHAIAAV  275 (650)
Q Consensus       211 hY~p~~h~L~~l~~-----~~~~~-~-~~--~~~~~~a~~~iv~ta~~~r~------~~KYg~rayR~~~lDaG~~~q~l  275 (650)
                             .+..+.+     ..... . ..  ...+..+...+++.......      .-.|++....+...|+|+++||+
T Consensus        63 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  135 (199)
T d1ywqa1          63 -------FWDIVKETLRARVPAENFEATVERLKGFHAGVGTVLFFEDQATVEKMQENAPLYKDQFPFWSHQGNAMLQHTV  135 (199)
T ss_dssp             -------HHHHHHHHHHHHSCHHHHHHHHGGGHHHHTSSEEEEEEEEHHHHHHHHHHCGGGTTTHHHHHHHHHHHHHHHH
T ss_pred             -------HHHHHHHHHHhhCchhhHHHHHHHHHHHHhCceEEEEEechHHHHHHHHhhhhhhhcchhhHHHHHHHHHHHH
Confidence                   0000000     00000 0 00  01123455555555443221      11245555667888999999999


Q ss_pred             HHHHHHcCCceEE--ecccCHHHHHHHhCCCCCCcceeeeccc
Q 006333          276 AMAAAELGWDVKI--LEGMGYKELKKLMGLDIFPEFVIPSKPI  316 (650)
Q Consensus       276 ~LaA~alGl~~~~--i~~f~d~~l~~lLgLd~~~E~v~~~~~i  316 (650)
                      +|+|+++|+|+|+  +++|+++.++++|||+. ++.++++++|
T Consensus       136 ~laa~a~glG~~~~~~~~~~~~~v~e~l~iP~-~~~~~~~l~i  177 (199)
T d1ywqa1         136 WMLLSAEGIGASLQHYNPIVDAEVKETWNIPA-EWSLVGQMPF  177 (199)
T ss_dssp             HHHHHHTTCEECCBCCTTTTHHHHHHHTTCCT-TEEEEEEEEE
T ss_pred             HHHHHhcCCceEeeccCccchHHHHHHhCCCC-CCEEEEEEEE
Confidence            9999999999986  67899999999999986 4678888888

>d1vkwa_ d.90.1.2 (A:) Putative nitroreductase TM1586 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: FMN-dependent nitroreductase-like
superfamily: FMN-dependent nitroreductase-like
family: Putative nitroreductase TM1586
domain: Putative nitroreductase TM1586
species: Thermotoga maritima [TaxId: 2336]

Probab=98.12  E-value=2.6e-06  Score=82.19  Aligned_cols=91  Identities=4%  Similarity=-0.110  Sum_probs=66.5

Q ss_pred             CcchhhhhccC----CCCCCCCCHHHHHHHHHHhcccccccccCCCcccccccCCCCCCcceEEEEEeCCccccCCCCee
Q 006333          134 NAPLYSSLFTS----LPPPQPLTVSSISQLFYDSLALSAWKTTGYSTWSLRVNPSSGNLHPTEAYIIAPAIESLCDSPFV  209 (650)
Q Consensus       134 ~~~~~~~l~~~----~~~~~pl~~~~Ls~lL~~s~g~~~~~~~g~~~~~~R~~PSaG~l~P~e~Yvv~~~v~gL~~~pGv  209 (650)
                      ...+++++..|    .+.+++|+.+.|..|+.+                .+.+||+++.+++.                 
T Consensus        11 ~M~l~EaI~~RrSvR~y~~~~V~~e~l~~I~~a----------------~~~a~~~~~~~~~~-----------------   57 (217)
T d1vkwa_          11 HMNIFEAIENRHSVRDFLERKMPERVKDDIENL----------------LVKFITKKLDWKIN-----------------   57 (217)
T ss_dssp             CCCHHHHHHHCCBCCCBCCSCCCHHHHHHHHHC----------------CCCCSSCCCCCEEE-----------------
T ss_pred             CCCHHHHHHhCceeeccCCCCCCHHHHHHHHHH----------------HHhCccCccCCcee-----------------
Confidence            34567777654    478999999999999976                35677776655432                 


Q ss_pred             eEecCCCCchhhhccCCchhccccccCCCCcEEEEEeeechhHHHhhhchhhhHHHHHHHHHHHHHHHHHHHcCCceEEe
Q 006333          210 AHYAPKEHALELRAKIPSRFDLFNNFFPKNSFLVGFSSIFWREAWKYGERAFRYCNHDVGHAIAAVAMAAAELGWDVKIL  289 (650)
Q Consensus       210 YhY~p~~h~L~~l~~~~~~~~~~~~~~~~a~~~iv~ta~~~r~~~KYg~rayR~~~lDaG~~~q~l~LaA~alGl~~~~i  289 (650)
                                                +.++|.+|++.+.-.          . ..+.|+|.++|||+|+|+++|||+||+
T Consensus        58 --------------------------~~~ap~~Ivv~~~~~----------~-~~~~d~G~a~e~l~L~A~~lGLGTCWi  100 (217)
T d1vkwa_          58 --------------------------LSSFPSYIYAKAEKH----------F-DELVEYGFQGEQIVLFLTAQGFGTCWM  100 (217)
T ss_dssp             --------------------------CSSSSEEEECCCCSS----------H-HHHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             --------------------------ecCCCEEEEEEEcCC----------c-cHHHHHHHHHHHHHHHHHHcCCCEEEE
Confidence                                      234566666665421          1 235799999999999999999999999


Q ss_pred             cccCH
Q 006333          290 EGMGY  294 (650)
Q Consensus       290 ~~f~d  294 (650)
                      |++++
T Consensus       101 g~~~~  105 (217)
T d1vkwa_         101 ARSPH  105 (217)
T ss_dssp             SCCSS
T ss_pred             eccCc
Confidence            98743