Citrus Sinensis ID: 006350

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MSWQSQKHIEGKSSSRGGGTTTSKIRKRGCSSSSSSSLAQRYRFKRAILVGKRGGRGGGGGSSTPVPAWKTSTKSPSLAMPAPEQSKGTLTSHRCGVKTKEVSVSARKLAATLWEINTVPSPKDKQILSDPSYSPFSEKMDRSRRNIIARRKRTSMGSQSHELQVSDCNVGAMDSNLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKKGKENGDMSPNFERIKELEAYLKKIQFGSCENGVTGENEGELANGEENDGDNDSADSDLHSIELNMDNGSRSYKWSYAHDDQEDRKRVSVDKVFKGRKSIEKIQWGNICFGRGSSNMEQSFHEHSGGIDRERLAEILSQTETDHADEIKQYRSIKSLRDHILSGSKTMSLQSFASPTRQWGQSLPVQDPGSAGRKSQGDDSGKQDVNGGCQQVLKSNSFC
cccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHcccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHcccccccc
ccHHHHHHcccEEccccccccccHEEEcccccccccHHHcccEEEEEEEEEcccccccccccccccccEEEcccccccccccccccccccccHcccccccccHHHHHHHHHHHHHHcccccccccHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEEcccccccEEEEcccccccccccccccHHHcccccHHHccccccccccccccHHHHHHHccccccccccHHHcHHHccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccccccHccccccccccccccccccHHEEcccccc
mswqsqkhiegksssrgggtttskirkrgcsssssssLAQRYRFKRAILVgkrggrgggggsstpvpawktstkspslampapeqskgtltshrcgvktkeVSVSARKLAATLWEintvpspkdkqilsdpsyspfsekmDRSRRNIIARRkrtsmgsqshelqvsdcnvgamdsnlisndgTMEIEALCsrgkhhngciSGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLgtkkgkengdmspnfERIKELEAYLKKIqfgscengvtgenegelangeendgdndsadsdlhSIELnmdngsrsykwsyahddqedrkrvsvdkvfkgRKSIEKIQWgnicfgrgssnmeqsfhehsggidRERLAEILSQTETDHADEIKQYRSIKSLRDHIlsgsktmslqsfasptrqwgqslpvqdpgsagrksqgddsgkqdvnggcqqvlksnsfc
mswqsqkhiegksssrgggtttskirkrgcssssssslaqRYRFKRAILVgkrggrgggggsstpvpawktstkspslampapeqskgtltshrcgvKTKEVSVSARKLAATLWeintvpspkdkqilsdpsyspfsekmdrsrRNIIARrkrtsmgsqshelqvsdCNVGAMDSNLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCiaeelevekklkRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARgigedraefeelKRESAKVKEEMEKEREMLQLADVLREERVQMKLSeakyhfeeknaAVERLRNELEAylgtkkgkengdmspNFERIKELEAYLKKIQFGSCENGVTGENEGELANGEENDGDNDSADSDLHSIELNMDNGSRSYKWsyahddqedrkrvsvdkvfkgrksiekiqwgnICFGRGSSNMEQSFHEHSGGIDRERLAEILSQTetdhadeikqyrsIKSLRDHILSGSKTMSLQSFASPTRQWGQSLPVQDPGSAGRksqgddsgkqdvnggcqqvlksnsfc
MSWQSQKHIEgksssrgggtttskirkrgCsssssssLAQRYRFKRAILVgkrggrgggggSSTPVPAWKTSTKSPSLAMPAPEQSKGTLTSHRCGVKTKEVSVSARKLAATLWEINTVPSPKDKQILSDPSYSPFSEKMDrsrrniiarrkrTSMGSQSHELQVSDCNVGAMDSNLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFaeekaawrrkererireaiSCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVkeemekeremLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKKGKENGDMSPNFERIKELEAYLKKIQFGSCENGVTgenegelangeendgdndsadsdlHSIELNMDNGSRSYKWSYAHDDQEDRKRVSVDKVFKGRKSIEKIQWGNICFGRGSSNMEQSFHEHSGGIDRERLAEILSQTETDHADEIKQYRSIKSLRDHILSGSKTMSLQSFASPTRQWGQSLPVQDPGSAGRKSQGDDSGKQDVNGGCQQVLKSNSFC
***********************************************I*****************************************************VSVSARKLAATLWEINT*********************************************************NLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAE***********************************************************************************************************************************************IKELEAYLKKIQFGSC***********************************************************VDKVFKGRKSIEKIQWGNICFGR************************************************************************************************************
*************************************************************************************************************AATLW***********************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************VLKSN**C
***************************************QRYRFKRAILVGKRG***********VPAW************************RCGVKTKEVSVSARKLAATLWEINTVPSPKDKQILSDPSYSPFSEKMDRSRRNIIARR***********LQVSDCNVGAMDSNLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAE*******************EMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKKGKENGDMSPNFERIKELEAYLKKIQFGSCENGVTGENEGELANGEENDGDNDSADSDLHSIELNMDNGSRSYKWSYAH*********SVDKVFKGRKSIEKIQWGNICFGRGSSNMEQSFHEHSGGIDRERLAEILSQTETDHADEIKQYRSIKSLRDHILSGSKTMSLQSFASPTRQWGQS**********************VNGGCQQVLKSNSFC
******************GTTTSKIRK*GCS*SSSSSLAQRYRFKRAILVGKR*********ST***********************************************TLWEINTV**********************************************************************************GIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLGTKK********PNFERIKELEAYLKKIQF*****************************SDLHSIELNMDNGSRSYKWSYAH************************************************IDRERLAEILSQTETDHADEIKQYRSIKSLRDHILSGSKTMSLQSFASPTRQWG****************************C**********
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSWQSQKHIEGKSSSRGGGTTTSKIRKRGCSSSSSSSLAQRYRFKRAILVGKRGGRGGGGGSSTPVPAWKTSTKSPSLAMPAPEQSKGTLTSHRCGVKTKEVSVSARKLAATLWEINTVPSPKDKQILSDPSYSPFSEKMDRSRRNIIARRKRTSMGSQSHELQVSDCNVGAMDSNLISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLxxxxxxxxxxxxxxxxxxxxxQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCxxxxxxxxxxxxxxxxxxxxxLxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCDELARGxxxxxxxxxxxxxxxxxxxxxxxxxxxxLQLADVLREERVQMKxxxxxxxxxxxxxxxxxxxxxxxxxxxxKKGKENGDMSPNFERIKELEAYLKKIQFGSCENGVTGENEGELANGEENDGDNDSADSDLHSIELNMDNGSRSYKWSYAHDDQEDRKRVSVDKVFKGRKSIEKIQWGNICFGRGSSNMEQSFHEHSGGIDRERLAEILSQTETDHADEIKQYRSIKSLRDHILSGSKTMSLQSFASPTRQWGQSLPVQDPGSAGRKSQGDDSGKQDVNGGCQQVLKSNSFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query649 2.2.26 [Sep-21-2011]
Q66GQ2623 Uncharacterized protein A no no 0.437 0.455 0.316 9e-34
>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2 Back     alignment and function desciption
 Score =  145 bits (366), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 102/322 (31%), Positives = 171/322 (53%), Gaps = 38/322 (11%)

Query: 126 QILSDPSYSPFSEKMDRSRRNI--IARRKRTSMGSQSHELQ-VSDCNVGA-----MDSNL 177
           Q L DPS     +     RR I  +  +   S+   +H LQ VS  + G+       +  
Sbjct: 113 QFLRDPSPDHQPDSAGSLRRQIGQMLIKHHQSIDRNNHALQPVSPASYGSSLEVTTYNKA 172

Query: 178 ISNDGTMEIEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSG 237
           ++   ++E     SR  H+N                L  S ELLKVLNRIW +EEQH S 
Sbjct: 173 VTPSSSLEFRGRPSREPHYN----------------LKTSTELLKVLNRIWSLEEQHVSN 216

Query: 238 ITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISC 297
           I+LI A++ EV  +RV++ +L++ Q  +  E++ ++K  AEEK   + KE ER+  A+  
Sbjct: 217 ISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVKQLAEEKLLSKNKEVERMSSAVQS 276

Query: 298 IAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARG 357
           + + LE E+KL++++E L++K+ +EL+E K+ LSN +KELE   ++  +ME +CDE A+G
Sbjct: 277 VRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCVKELERGSKSNKMMELLCDEFAKG 336

Query: 358 IGEDRAEFEELKRESAKVKEEMEK--------EREMLQLADVLREERVQMKLSEAKYHFE 409
           I     E   LK      K+ ++K        ++ +L +A+   +ER+QM+L        
Sbjct: 337 IKSYEEEIHGLK------KKNLDKDWAGRGGGDQLVLHIAESWLDERMQMRLEGGDTLNG 390

Query: 410 EKNAAVERLRNELEAYLGTKKG 431
           +  + +++L  E+E +L  K+ 
Sbjct: 391 KNRSVLDKLEVEIETFLQEKRN 412

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
224131788649 predicted protein [Populus trichocarpa] 0.889 0.889 0.622 0.0
255565727603 conserved hypothetical protein [Ricinus 0.865 0.932 0.639 0.0
359479485616 PREDICTED: uncharacterized protein At5g4 0.848 0.894 0.545 1e-162
359482028693 PREDICTED: uncharacterized protein At5g4 0.906 0.848 0.501 1e-151
255579349680 conserved hypothetical protein [Ricinus 0.895 0.854 0.490 1e-137
224091941667 predicted protein [Populus trichocarpa] 0.873 0.850 0.495 1e-136
297740164583 unnamed protein product [Vitis vinifera] 0.798 0.888 0.490 1e-132
356570881666 PREDICTED: uncharacterized protein At5g4 0.881 0.858 0.486 1e-128
356544748659 PREDICTED: uncharacterized protein At5g4 0.839 0.827 0.502 1e-127
356541386662 PREDICTED: uncharacterized protein At5g4 0.850 0.833 0.504 1e-126
>gi|224131788|ref|XP_002328108.1| predicted protein [Populus trichocarpa] gi|222837623|gb|EEE75988.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 390/627 (62%), Positives = 476/627 (75%), Gaps = 50/627 (7%)

Query: 24  KIRKRGCSSSSSSSLAQRYRFKRAILVGKRGGRGGGGGSSTPVPAWKTSTKSPSLAMPAP 83
           KIRKRG SSSSSSSL ++YRFKRAILVGKRGG      SSTPVP W TS+KSP+LA P  
Sbjct: 12  KIRKRGNSSSSSSSLVKKYRFKRAILVGKRGG------SSTPVPIWMTSSKSPTLAEPNA 65

Query: 84  EQSKGTLTSHRCGVKTKEVSVSARKLAATLWEINTVPSPKDKQIL--------------- 128
           E +K   T H+ G K KEVSVSARKLAATLWEIN +PSP+ K+ L               
Sbjct: 66  ESTK--CTPHQNGSKAKEVSVSARKLAATLWEINGIPSPRVKKDLEDKNEVRSREKVARL 123

Query: 129 ---SDPSYSPFSEKMDRSRRNIIARRKRTSMGSQSHELQVSDCNVGAMDSNLISNDGTME 185
              SDPSY+PFSE+M+RSR +  + R+RTS+ +++  LQ++D ++G +DS  + N   ME
Sbjct: 124 PHLSDPSYTPFSERMERSRGH--SHRRRTSVVTKT--LQLTDYHLGGLDS--VGNSSLME 177

Query: 186 IEALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIR 245
           IE   S  K  +  I GIKT LKDVS+GLT SKELLKVLN + G+EE+HSSG++L+SA+R
Sbjct: 178 IE---SHPKGRSRTI-GIKTCLKDVSNGLTTSKELLKVLNHVCGLEEKHSSGLSLVSALR 233

Query: 246 AEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVE 305
            E+DRA + V+QLI+EQ  N SEIEYL+KHF EEKAAW+ KER+RIR AI+CIAEELE+E
Sbjct: 234 IELDRACISVNQLIREQRSNRSEIEYLVKHFEEEKAAWKSKERDRIRSAIACIAEELEIE 293

Query: 306 KKLKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEF 365
           +KL+RQTERLNKKLGKELA+TK  LS AMKELE+EKRAK+I+EQVCDELARGIG+DRAE 
Sbjct: 294 RKLRRQTERLNKKLGKELADTKESLSKAMKELETEKRAKEILEQVCDELARGIGDDRAEV 353

Query: 366 EELKRESAKVKEEMEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAY 425
           EE+K+ESAKV++E+EKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELE Y
Sbjct: 354 EEMKKESAKVRDEVEKEREMLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELETY 413

Query: 426 LGTKKGKENGDMSPNFERIKELEAYLKKIQFGSCENGVTGENE-GELANGEENDGDNDSA 484
           L  K G+++GD SPN++RIKELEAYL++IQFGSC+     EN+ G   NGE +DGD DSA
Sbjct: 414 LREKVGEKDGDGSPNYDRIKELEAYLEEIQFGSCQQAEREENKGGATGNGEVHDGD-DSA 472

Query: 485 DSDLHSIELNMDNGSRSYKWSYAHDDQEDRKRVSVDKVFKGRKSI-EKIQWGNICFGRGS 543
           DSDLHSIELNMDN S+SYKW YA +D  + K  S  K FKGRKSI + IQWGNIC  R +
Sbjct: 473 DSDLHSIELNMDNNSKSYKWCYASED--NSKWFSGGKDFKGRKSISDNIQWGNICLQRRN 530

Query: 544 SN--------MEQSFHEHSGGIDRERLAEI-LSQTETDHADEIKQYRSIKSLRDHILSGS 594
           SN        +           D+ER+AE+  +     + DEI++YRS+++L+DHILSG 
Sbjct: 531 SNGIDGLGRDLISENQARPDMPDQERVAELGFNSQAQGYEDEIRKYRSVRTLKDHILSGP 590

Query: 595 KTMSLQSFASPTRQWGQSLPVQDPGSA 621
           K   +++FASPTR WGQSLP Q+ GS 
Sbjct: 591 KRSPIRNFASPTRLWGQSLPFQESGSV 617

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255565727|ref|XP_002523853.1| conserved hypothetical protein [Ricinus communis] gi|223536941|gb|EEF38579.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|359479485|ref|XP_002272987.2| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|359482028|ref|XP_002275906.2| PREDICTED: uncharacterized protein At5g41620-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255579349|ref|XP_002530519.1| conserved hypothetical protein [Ricinus communis] gi|223529923|gb|EEF31851.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|224091941|ref|XP_002309409.1| predicted protein [Populus trichocarpa] gi|222855385|gb|EEE92932.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297740164|emb|CBI30346.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356570881|ref|XP_003553612.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|356544748|ref|XP_003540809.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information
>gi|356541386|ref|XP_003539158.1| PREDICTED: uncharacterized protein At5g41620-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
TAIR|locus:2080792622 AT3G11590 [Arabidopsis thalian 0.590 0.615 0.454 2.3e-94
TAIR|locus:2160477623 AT5G41620 "AT5G41620" [Arabido 0.335 0.349 0.337 2.8e-28
TAIR|locus:2176387481 AT5G22310 "AT5G22310" [Arabido 0.194 0.261 0.478 2e-27
TAIR|locus:2007996725 AT1G50660 [Arabidopsis thalian 0.331 0.296 0.310 4.3e-25
TAIR|locus:2092319673 AT3G20350 [Arabidopsis thalian 0.303 0.292 0.319 6.6e-22
TAIR|locus:2024568593 AT1G64180 "AT1G64180" [Arabido 0.343 0.376 0.302 2e-21
TAIR|locus:2062877468 AT2G46250 "AT2G46250" [Arabido 0.345 0.478 0.301 4.5e-21
TAIR|locus:2027402247 AT1G11690 "AT1G11690" [Arabido 0.211 0.554 0.283 4.3e-06
UNIPROTKB|G4MS84625 MGG_04501 "Uncharacterized pro 0.325 0.337 0.235 0.00014
TAIR|locus:2010876273 BLT "AT1G64690" [Arabidopsis t 0.166 0.395 0.35 0.00066
TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 762 (273.3 bits), Expect = 2.3e-94, Sum P(3) = 2.3e-94
 Identities = 188/414 (45%), Positives = 249/414 (60%)

Query:   128 LSDPSYSPFSEKMDXXXXXXXXXXXXTSMGSQSHELQVSDCNVGAMDSNLISNDGTMEIE 187
             LSDPS+SP SE+M+            +++     +L++ DCNVGA D   I++   M+IE
Sbjct:   151 LSDPSHSPVSERMERSGTGSRQRRASSTV----QKLRLGDCNVGARDP--INSGSFMDIE 204

Query:   188 ALCSRGKHHNGCISGIKTRLKDVSSGLTASKELLKVLNRIWGIEEQHSSGITLISAIRAE 247
                SR +   G   G+KTRLKD S+ LT SKELLK++NR+WG +++ SS ++L+SA+ +E
Sbjct:   205 TR-SRVETPTGSTVGVKTRLKDCSNALTTSKELLKIINRMWGQDDRPSSSMSLVSALHSE 263

Query:   248 VDRARVQVDQLIKEQCLNHSEIEYLMKHFXXXXXXXXXXXXXXXXXXXSCIAEELEVEKK 307
             ++RAR+QV+QLI E    +++I YLMK F                     +A ELEVE+K
Sbjct:   264 LERARLQVNQLIHEHKPENNDISYLMKRFAEEKAVWKSNEQEVVEAAIESVAGELEVERK 323

Query:   308 LKRQTERLNKKLGKELAETKACLSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEE 367
             L+R+ E LNKKLGKELAETK+ L  A+KE+E+EKRA+ ++E+VCDELAR I ED+AE EE
Sbjct:   324 LRRRFESLNKKLGKELAETKSALMKAVKEIENEKRARVMVEKVCDELARDISEDKAEVEE 383

Query:   368 LKRESAKVXXXXXXXXXXLQLADVLREERVQMKLSEAKYHFEEKNAAVERLRNELEAYLG 427
             LKRES KV          LQLAD LREERVQMKLSEAK+  EEKNAAV++LRN+L+ YL 
Sbjct:   384 LKRESFKVKEEVEKEREMLQLADALREERVQMKLSEAKHQLEEKNAAVDKLRNQLQTYLK 443

Query:   428 TKKGKENGDMSPNFERIKELEA--YLKK-IQFGS--CENGVTXXXXXXXXXXXXXXXXXX 482
              K+ KE     P  +   E EA  YL   I FGS   E+G                    
Sbjct:   444 AKRCKEKTREPPQTQLHNE-EAGDYLNHHISFGSYNIEDGEVENGNEEGSGESDL----- 497

Query:   483 XXXXXXHSIELNMDNGSRSYKWSYAHDDQEDRKRVSVD-KVFKGRKSIEK-IQW 534
                   HSIELN+DN  +SYKW Y    +E+R R S   K    ++SI   + W
Sbjct:   498 ------HSIELNIDN--KSYKWPYG---EENRGRKSTPRKSLSLQRSISDCVDW 540
GO:0005886 "plasma membrane" evidence=IDA
TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MS84 MGG_04501 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
TAIR|locus:2010876 BLT "AT1G64690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.66.413.1
hypothetical protein (510 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 8e-08
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 2e-06
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 4e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-05
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 5e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 3e-04
smart00787312 smart00787, Spc7, Spc7 kinetochore protein 3e-04
pfam12128 1198 pfam12128, DUF3584, Protein of unknown function (D 6e-04
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-04
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 7e-04
TIGR021691164 TIGR02169, SMC_prok_A, chromosome segregation prot 7e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.001
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 0.001
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
PRK08475167 PRK08475, PRK08475, F0F1 ATP synthase subunit B; V 0.002
PRK03918 880 PRK03918, PRK03918, chromosome segregation protein 0.003
COG1475240 COG1475, Spo0J, Stage 0 sporulation protein J (ant 0.003
COG0711161 COG0711, AtpF, F0F1-type ATP synthase, subunit b [ 0.003
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 55.5 bits (134), Expect = 8e-08
 Identities = 52/230 (22%), Positives = 99/230 (43%), Gaps = 10/230 (4%)

Query: 219 ELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAE 278
           EL + L  +    EQ  S +  +     E++    ++ + ++E       +E        
Sbjct: 720 ELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLE-------- 771

Query: 279 EKAAWRRKERERIREAISCIAEELEVEKKLKRQTERLNKKLGKELAETKACLSNAMKELE 338
           E  A  ++E E + E    + EELE  ++   + ER    L +EL   +       +E+E
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831

Query: 339 SEKRAKDIMEQVCDELARGIGEDRAEFEELKRESAKVKEEMEKEREMLQLADVLREERVQ 398
             +   + +E+  DEL   + E   E EELK E  +++ E E+  + L+  +  +EE ++
Sbjct: 832 ELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEE-LE 890

Query: 399 MKLSEAKYHFEEKNAAVERLRNELEAYLGTKKGKENGDMSPNFERIKELE 448
            +L E +    E    +E+LR  LE     K  +   ++    E ++E  
Sbjct: 891 EELRELESELAELKEEIEKLRERLEELE-AKLERLEVELPELEEELEEEY 939

Length = 1163
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein Back     alignment and domain information
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584) Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|236272 PRK08475, PRK08475, F0F1 ATP synthase subunit B; Validated Back     alignment and domain information
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional Back     alignment and domain information
>gnl|CDD|224392 COG1475, Spo0J, Stage 0 sporulation protein J (antagonist of Soj) containing ParB-like nuclease domain [Transcription] Back     alignment and domain information
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 649
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 97.59
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 97.2
KOG0971 1243 consensus Microtubule-associated protein dynactin 97.12
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.05
KOG0977546 consensus Nuclear envelope protein lamin, intermed 97.05
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 96.57
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.53
PF00038312 Filament: Intermediate filament protein; InterPro: 96.49
PF00038312 Filament: Intermediate filament protein; InterPro: 96.47
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 96.45
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 96.41
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 96.33
KOG0996 1293 consensus Structural maintenance of chromosome pro 96.31
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 96.14
KOG09331174 consensus Structural maintenance of chromosome pro 95.82
PRK02224 880 chromosome segregation protein; Provisional 95.55
KOG0977546 consensus Nuclear envelope protein lamin, intermed 95.39
COG11961163 Smc Chromosome segregation ATPases [Cell division 95.25
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.11
PRK02224 880 chromosome segregation protein; Provisional 95.09
PHA02562562 46 endonuclease subunit; Provisional 95.02
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 94.87
PF05701522 WEMBL: Weak chloroplast movement under blue light; 94.73
PRK03918 880 chromosome segregation protein; Provisional 94.73
PRK11637428 AmiB activator; Provisional 94.26
KOG01631259 consensus Myosin class VI heavy chain [Cytoskeleto 94.22
PRK09039343 hypothetical protein; Validated 94.09
PF09727192 CortBP2: Cortactin-binding protein-2; InterPro: IP 94.09
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 93.37
PF05701522 WEMBL: Weak chloroplast movement under blue light; 93.32
KOG09331174 consensus Structural maintenance of chromosome pro 93.3
KOG0964 1200 consensus Structural maintenance of chromosome pro 93.21
PF09731582 Mitofilin: Mitochondrial inner membrane protein; I 93.12
KOG0971 1243 consensus Microtubule-associated protein dynactin 92.88
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 92.49
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 92.45
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 92.4
PF06705247 SF-assemblin: SF-assemblin/beta giardin 92.2
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 92.17
KOG0963629 consensus Transcription factor/CCAAT displacement 92.11
TIGR006061311 rad50 rad50. This family is based on the phylogeno 91.85
KOG4593716 consensus Mitotic checkpoint protein MAD1 [Cell cy 91.7
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.65
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 91.45
PHA02562562 46 endonuclease subunit; Provisional 91.22
PF05615139 THOC7: Tho complex subunit 7; InterPro: IPR008501 91.21
KOG0976 1265 consensus Rho/Rac1-interacting serine/threonine ki 90.99
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 90.9
PF12128 1201 DUF3584: Protein of unknown function (DUF3584); In 90.58
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 90.51
KOG0996 1293 consensus Structural maintenance of chromosome pro 90.23
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 89.69
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 88.91
KOG0239 670 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] 88.87
PF10186302 Atg14: UV radiation resistance protein and autopha 88.41
KOG1103561 consensus Predicted coiled-coil protein [Function 88.07
TIGR03185650 DNA_S_dndD DNA sulfur modification protein DndD. T 88.0
PRK11637428 AmiB activator; Provisional 87.91
PRK04778569 septation ring formation regulator EzrA; Provision 87.41
PF09728309 Taxilin: Myosin-like coiled-coil protein; InterPro 87.21
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 87.13
PRK03918 880 chromosome segregation protein; Provisional 86.61
PF07798177 DUF1640: Protein of unknown function (DUF1640); In 86.44
PF05010207 TACC: Transforming acidic coiled-coil-containing p 85.95
PF10186302 Atg14: UV radiation resistance protein and autopha 85.8
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 85.78
PRK04778569 septation ring formation regulator EzrA; Provision 85.58
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 85.57
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 85.53
KOG05791187 consensus Ste20-like serine/threonine protein kina 84.4
PRK04863 1486 mukB cell division protein MukB; Provisional 84.14
KOG1853333 consensus LIS1-interacting protein NUDE [Cytoskele 84.03
cd07652234 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Am 84.01
PRK04863 1486 mukB cell division protein MukB; Provisional 83.86
PF00901508 Orbi_VP5: Orbivirus outer capsid protein VP5; Inte 83.7
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 83.53
KOG0982502 consensus Centrosomal protein Nuf [Cell cycle cont 83.27
PF01576859 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Mu 83.24
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.09
KOG4466291 consensus Component of histone deacetylase complex 83.03
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 82.44
KOG4787 852 consensus Uncharacterized conserved protein [Funct 82.25
PRK00409782 recombination and DNA strand exchange inhibitor pr 81.81
KOG0964 1200 consensus Structural maintenance of chromosome pro 81.07
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 81.05
TIGR00634563 recN DNA repair protein RecN. All proteins in this 80.97
PF04156191 IncA: IncA protein; InterPro: IPR007285 Chlamydia 80.89
PF08317325 Spc7: Spc7 kinetochore protein; InterPro: IPR01325 80.56
COG4942420 Membrane-bound metallopeptidase [Cell division and 80.1
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information 
Probab=97.59  E-value=0.014  Score=67.55  Aligned_cols=73  Identities=19%  Similarity=0.333  Sum_probs=60.7

Q ss_pred             ccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 006350          231 EEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAISCIAEELEVEKKLKR  310 (649)
Q Consensus       231 eeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~slk~ELe~ERk~Rr  310 (649)
                      ....-..=+-|..|+.|-++.+.++..|.+.++.++..|..|=|+|++|+..+-.            +..+|..|||.|+
T Consensus       452 ~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~  519 (697)
T PF09726_consen  452 TNNERSLKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARK  519 (697)
T ss_pred             cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHh
Confidence            3333344467889999999999999999999999999999999999999776543            6678999999999


Q ss_pred             HHHHH
Q 006350          311 QTERL  315 (649)
Q Consensus       311 r~E~l  315 (649)
                      ..|.-
T Consensus       520 ~ee~~  524 (697)
T PF09726_consen  520 EEEEK  524 (697)
T ss_pred             HHHHh
Confidence            98763

; GO: 0016021 integral to membrane
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF09727 CortBP2: Cortactin-binding protein-2; InterPro: IPR019131 This entry represents a N-terminal domain found in cortactin-binding protein 2 and in filamin A interacting protein 1 (Filip1) Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PF06705 SF-assemblin: SF-assemblin/beta giardin Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PHA02562 46 endonuclease subunit; Provisional Back     alignment and domain information
>PF05615 THOC7: Tho complex subunit 7; InterPro: IPR008501 The Tho complex (THOC) is involved in transcription elongation and mRNA export from the nucleus [] Back     alignment and domain information
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms] Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0239 consensus Kinesin (KAR3 subfamily) [Cytoskeleton] Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>KOG1103 consensus Predicted coiled-coil protein [Function unknown] Back     alignment and domain information
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins Back     alignment and domain information
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules Back     alignment and domain information
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PRK04778 septation ring formation regulator EzrA; Provisional Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>KOG0579 consensus Ste20-like serine/threonine protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton] Back     alignment and domain information
>cd07652 F-BAR_Rgd1 The F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain of Saccharomyces cerevisiae Rho GTPase activating protein Rgd1 and similar proteins Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF00901 Orbi_VP5: Orbivirus outer capsid protein VP5; InterPro: IPR000145 The orbivirus VP5 protein is one of the two proteins (with VP2) which make up the virus particle outer capsid Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>KOG4466 consensus Component of histone deacetylase complex (breast carcinoma metastasis suppressor 1 protein in human) [Cell cycle control, cell division, chromosome partitioning; Transcription] Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG4787 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>TIGR00634 recN DNA repair protein RecN Back     alignment and domain information
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion Back     alignment and domain information
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [] Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-09
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 5e-08
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-06
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 1e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 3e-05
1g8x_A1010 Myosin II heavy chain fused to alpha-actinin 3; mo 8e-07
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 5e-06
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 73.7 bits (180), Expect = 1e-13
 Identities = 93/551 (16%), Positives = 171/551 (31%), Gaps = 151/551 (27%)

Query: 2   SW-QSQKHIEGKSSSRGGGTTTSKIRKRGCSSSSSSSLAQR--YRFK-----RAILVGKR 53
            +  S    E +  S     T   I +R    + +   A+    R +     R  L+  R
Sbjct: 92  KFLMSPIKTEQRQPS---MMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR 148

Query: 54  GGRG----GGGGSSTPVPAWKTSTKSPSLAMPAPEQSKGTLTSHRCGVKTKEVSVSARKL 109
             +     G  GS           K+  +A+     S          +            
Sbjct: 149 PAKNVLIDGVLGSG----------KT-WVALDVC-LSYKVQCKMDFKI------------ 184

Query: 110 AATLW-EINTVPSPKD--KQILS-----DPSYSPFSEKMDRSRRNI--IARRKRTSMGSQ 159
               W  +    SP+   + +       DP+++  S+     +  I  I    R  + S+
Sbjct: 185 ---FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK 241

Query: 160 SHE--LQVSDCNVGAMDSNLISNDGTMEIEALC-----SRGKHHNGCISGIKT---RLKD 209
            +E  L V   NV   ++   +      +   C     +R K     +S   T    L  
Sbjct: 242 PYENCLLVLL-NV--QNAKAWN---AFNLS--CKILLTTRFKQVTDFLSAATTTHISLDH 293

Query: 210 VSSGLTA--SKELL-KVLN-RIWGIEEQHSSG----ITLISA-IRAEVDR----ARVQVD 256
            S  LT    K LL K L+ R   +  +  +     +++I+  IR  +        V  D
Sbjct: 294 HSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Query: 257 QLIK--EQCLNHSEIEYLMKHFAE----EKAA----------WRRKERERIREAISCIAE 300
           +L    E  LN  E     K F        +A          W    +  +      +  
Sbjct: 354 KLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV----VVN 409

Query: 301 ELE----VEKKLKRQTERLN-------KKLGKELAETKACLS--NAMKELESEKRAKDIM 347
           +L     VEK+ K  T  +         KL  E A  ++ +   N  K  +S+      +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL 469

Query: 348 EQ-VCDELAR-----GIGEDRAEFEELKRE----SAKVKEEMEKEREMLQLADVLREERV 397
           +Q     +          E    F  +  +      K++ +         + + L++ + 
Sbjct: 470 DQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLK- 528

Query: 398 QMKLSEAKY--HFEEKNAAVERLRNELEAYLGTKKGKENGDMSPNFERIKEL-------- 447
                   Y  +  + +   ERL N +  +L   K +EN   S  +  +  +        
Sbjct: 529 -------FYKPYICDNDPKYERLVNAILDFL--PKIEENLICSK-YTDLLRIALMAEDEA 578

Query: 448 ---EAYLKKIQ 455
              EA+ K++Q
Sbjct: 579 IFEEAH-KQVQ 588
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 97.41
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 96.57
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 96.25
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 95.94
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.66
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 94.51
2e7s_A135 RAB guanine nucleotide exchange factor SEC2; coile 93.27
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 93.1
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 93.08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 92.99
3u59_A101 Tropomyosin beta chain; muscle contraction, actin, 91.52
3u1c_A101 Tropomyosin alpha-1 chain; anti-parallel coiled co 90.15
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 88.97
2hg7_A110 Phage-like element PBSX protein XKDW; dimer, GFT s 88.71
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 87.63
3oja_A487 Leucine-rich immune molecule 1; coiled-coil, helix 87.61
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 87.33
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 85.03
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 84.5
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 84.34
2eqb_B97 RAB guanine nucleotide exchange factor SEC2; coile 83.81
2w6b_A56 RHO guanine nucleotide exchange factor 7; X-RAY cr 83.72
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 82.0
2p22_C192 Protein SRN2; endosome, trafficking complex, VPS23 80.62
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
Probab=97.41  E-value=0.0076  Score=57.16  Aligned_cols=131  Identities=16%  Similarity=0.259  Sum_probs=100.9

Q ss_pred             hHHHHHHHHhhhccccccCcchhHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 006350          217 SKELLKVLNRIWGIEEQHSSGITLISAIRAEVDRARVQVDQLIKEQCLNHSEIEYLMKHFAEEKAAWRRKERERIREAIS  296 (649)
Q Consensus       217 S~ELlKVLnrIw~leeq~~s~~Slv~aLk~EL~~AR~~I~eL~~E~~s~~~eie~L~KqlaEEK~awKsKE~eki~aai~  296 (649)
                      |+.|+..+|+.=.|+|.       +..++.+|..++.+|++|+..+..    ++.|...            ..-+..-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~~----~~~l~~~------------~~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKED----YNTLKRE------------LSDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHHH----HHHHHTH------------HHHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH------------HhhhhHHHH
Confidence            68999999999877775       678899999999999999987643    3333222            122566677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHH
Q 006350          297 CIAEELEVEKKLKRQTERLNKKLGKELAETKAC-LSNAMKELESEKRAKDIMEQVCDELARGIGEDRAEFEELKR  370 (649)
Q Consensus       297 slk~ELe~ERk~Rrr~E~lnrKL~~ELaE~Kss-~~~alkelE~ERKaRellE~vCDELAkgI~edkaEVe~LKr  370 (649)
                      .+..+|..|+..|..+|.-..++-.||.+.-.| |..|=+=.-.+|+.+..+|.=-+.|-+.+.+-+.-++.|-.
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r~~~L~~ql~e~~~~l~~lq~  136 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEILNKRLTEQLREKDTLLDTLTL  136 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            799999999999999999999999999997665 45555555567888888888888888877766655555443
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus} Back     alignment and structure
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1 Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus} Back     alignment and structure
>2p22_C Protein SRN2; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_C 2f66_C Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00