Citrus Sinensis ID: 006351

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
ccccccccccccccccccHHccccccccEEEcccEEEEEEEEEccccccEEEEEEEEEEEEEEccccccccccccccccccHHHHcccccccccccccccEEEEEEEEEEccccEEEEEEEEEEccEEEEEEEEEEEEEEcccEEEEEEccccccccccccccccccccccccEEEEEcccccEEEEEEcccccEEcccEEEEEEEEEEccccccccccccccccccccccccccEEEcccccccccccccEEEEEEEEEccccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEcEEEEEEEEEcccccccEEEEEEEEEcccccEEEEEEEEEEEccEEEEEEccccccccccEEccccEEEEEEEEEEcccccccccccccccccccccEEccccccccEEccccccHHHHHHHHHcccccccccccccEEEEEccccccccccccccccccccccccccccccccEEEEEccccEEEcccccccEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccccccccccEEEcEEEEEccccccccccccccccccccccEEEEEEEEEEEEEccccEEEEEcEEEEEEccEEEccccEEEEEEEEcccccccccccccccccccccEEEEEEEcc
cccccccccccHHHccccccHHHHccccEEEEccEEEEEEEEEccccEEEEEccEEEEEEEEccccccccccccccccccccccccEEEEcccccccccEEEEEEEEEEEccccEEEEEEEEEEcccEEEEEEEEEEEEcccccccEEEccccccccccccccccEccccccEEEEEcccccEEEEEEEcccHHHccccEEEEEEEEEEcccccccccEcccHHccccccccccccccccccccEccccccEEEEEEEEccccccEEEEEEEEEEccccccccEEEEEEEEEEEEEEccEEEEEEEEEcccccccEEEEEEEEEccccccEEEEEEEEEcccEEEEccccccccccccccccccEEEEEEEEcccccccccccccccccHccccccEcccccHHHHHHcccHHHcHHHHHHHHccccccccccEEEEEEEEEEEccccccccccccHHHHHHHHHHccccccccccccccccccHHHHHccccccccccccccHHHHHHHHEEHccccccccccccEEEEEEEEEcccccccEEEEEEEEcccccccccccccccccccccccEEEEEcEEEEEEEccccEEEEEEEEEEEcccEEEcccEEEEEEEcccccccccccccccccccccccEEEEEEEcc
MIPSLSTARSNWLELQSKLIMKKFEesnicvagepvkvdiefknplqipisisnISLICElstrsdemesdsnssttelqndEESKLLTttgemnsdtssfTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAkgrrkvksspsndlKFIVIKSlpkleglihplperayaGDLRHLVLELKNQSDFSVKKMTNAeqsvaggnfnkmpqavfsfpegisiqgetpllwplwyraavpgkisLSITIYYEMGDVSSVIKYRLLRMHYnlevlpslnvsfqispwsSRLQQYLVRMDVVnqtssenfqihqlssvghqweisllqpfdsifpseslfagqALSCFFMLknrgesstssddtsspsrllgsdvslqgtadtlfdisgspladfhAHERLLQRvsqddtntvdfifisqpsksdsdsgisdpqhlfshhachcsilgktpitwlvdgprtlhhnfnasfceVNLKMTIYNSSDAAMFVRVntfdspsssgqtseatsprsavpsgnqagwhdvpvltdikvtsqlplnqvkrssllesvspfiwsgssassvrlqpmsttdiamkvclfspgtydlsnyALNWKLLTisgqgnegetrqssgscpgypyFLTVLQAS
mipslstarsNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNplqipisisnISLICELSTRSdemesdsnssttelqndeESKLLTTtgemnsdtsSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGvynfesnlvkkkiakgrrkvksspsndlkfiVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESstssddtsspsrlLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLEsvspfiwsgssassVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGetrqssgscpgypYFLTVLQAS
MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLvkkkiakgrrkvkSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGEsstssddtsspsRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
***********WLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICEL****************************************TLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIA************DLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKN********************FNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFML******************************DTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFI****************HLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNT**************************GWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSG**********MSTTDIAMKVCLFSPGTYDLSNYALNWKLLTIS***************PGYPYFLTVL***
******************************VAGEPVKVDIEFKNPLQIPISISNISLICELSTRS*****************************NSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFE********************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA**************************GETPLLWPLWYRAAVPGKISLSITIYYEM********YRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLL************FAGQALSCFFMLKN*********************************ISGSPLADFHAHE***********************************HLFSHHACHCSILGKTPITWLVDGPRT*********CEVNLKMTIYNSSDAAMFVRVNTFD*********************NQAGWHDVPVLTD***********************FIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNW***********************YPYFLTVLQA*
*********SNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELS**********************SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKI************NDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNR***************LLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQ***********DPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTF**********************NQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQ***********SCPGYPYFLTVLQAS
**************LQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEM***************ESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESN***********KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRG*******DTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTS**************SVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTI***************CPGYPYFLTVLQA*
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRVSQDDTNTVDFIFISQPSKSDSDSGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGNEGETRQSSGSCPGYPYFLTVLQAS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
255566159 1284 conserved hypothetical protein [Ricinus 0.950 0.480 0.604 0.0
296089365 1262 unnamed protein product [Vitis vinifera] 0.975 0.501 0.584 0.0
359481103 1289 PREDICTED: trafficking protein particle 0.975 0.491 0.584 0.0
356503854 1289 PREDICTED: trafficking protein particle 0.983 0.494 0.551 0.0
449437874 1288 PREDICTED: trafficking protein particle 0.986 0.496 0.538 0.0
356572633 1257 PREDICTED: trafficking protein particle 0.983 0.507 0.543 0.0
356572629 1283 PREDICTED: trafficking protein particle 0.983 0.497 0.543 0.0
356572631 1254 PREDICTED: trafficking protein particle 0.983 0.508 0.543 0.0
297811763 1249 binding protein [Arabidopsis lyrata subs 0.961 0.499 0.513 1e-178
334187712 1244 uncharacterized protein [Arabidopsis tha 0.959 0.500 0.511 1e-178
>gi|255566159|ref|XP_002524067.1| conserved hypothetical protein [Ricinus communis] gi|223536635|gb|EEF38277.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  782 bits (2020), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 397/657 (60%), Positives = 486/657 (73%), Gaps = 40/657 (6%)

Query: 1    MIPSLSTARSNWLELQSKLIMKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICE 60
            MIPSLS A+SNWLELQSK++ K F+++NICVAGE +KV IEF+NPL+IPIS+S++SLICE
Sbjct: 615  MIPSLSAAKSNWLELQSKVVPKSFKDANICVAGEAIKVRIEFQNPLKIPISLSSVSLICE 674

Query: 61   LSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQL 120
            LS  SD+M SD+ SS TE QNDEE K L   G++ SD S FTLSE D +L G E ILV L
Sbjct: 675  LSG-SDDMNSDAGSSATEHQNDEECKKL---GDLTSDNSLFTLSEADFTLEGDEKILVHL 730

Query: 121  MVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDLKFIVIKS 180
             VTPKVEG LKIVG+RW+LSGS++G YN ESNLVK KI KGRRK K SP + LKFIVIK+
Sbjct: 731  TVTPKVEGSLKIVGIRWKLSGSVLGYYNLESNLVKGKITKGRRKAKHSPKSYLKFIVIKN 790

Query: 181  LPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVK------------------------ 216
            LPKLEG+IH LPE+AYAGDLRHLVLEL+NQS+FSVK                        
Sbjct: 791  LPKLEGIIHSLPEKAYAGDLRHLVLELRNQSEFSVKNLKMKISNPRFMSIGNGEDLNCEI 850

Query: 217  -----KMTNAEQSVAGGNFNKMPQAVFSFPEGISIQGETPLLWPLWYRAAVPGKISLSIT 271
                 K T  EQ     +  K    +F FPE ISI+ E PL WPLW RAAVPGKISL + 
Sbjct: 851  PECLEKKTEFEQISVPADSKKELHDIFVFPEDISIEREKPLSWPLWLRAAVPGKISLYMV 910

Query: 272  IYYEMGDVSSVIKYRLLRMHYNLEVLPSLNVSFQISPWSSRLQQYLVRMDVVNQTSSENF 331
            +YYEMGD SS+++YR LRM Y+L+VLPSL++SF ISP  SRLQ++LVRMD+VN+TSSE+F
Sbjct: 911  VYYEMGDASSIMRYRTLRMQYDLQVLPSLDLSFAISPCPSRLQEFLVRMDLVNKTSSESF 970

Query: 332  QIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGESSTSSDDTSSPSRL 391
            Q++QLS VGHQWEISLLQP D+IFPS+SL AGQA SCFFMLK+R +S  + +   S SR 
Sbjct: 971  QVNQLSCVGHQWEISLLQPPDAIFPSQSLIAGQAFSCFFMLKSRRKSLGTGEKILSLSRF 1030

Query: 392  LGSDVSL--QGTADTLFDISGSPLADFHAHERLLQRVS-QDDTNTVDFIFISQPSKSDSD 448
             GSDV L  + + +TLFDIS SPLADFH +ERL    S Q+  NTVD I IS+P KSD+ 
Sbjct: 1031 PGSDVRLTPEDSKNTLFDISSSPLADFHDYERLQHETSNQESVNTVDLILISRPLKSDNA 1090

Query: 449  SGISDPQHLFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAM 508
            +GIS+P HLFSHHACHCS    +PI+W+VDGPR   H F+ASFCEVNL+M +YNSSDA  
Sbjct: 1091 TGISNPPHLFSHHACHCSTASTSPISWIVDGPRFRRHKFSASFCEVNLRMLVYNSSDAVA 1150

Query: 509  FVRVNTFDSPSSSGQTSEATSPRSAVPSGNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLL 568
             V +NT DS S +GQ S+A    SAV S NQ GWH + +  DIK+ S +P   V R    
Sbjct: 1151 SVAINTLDSTSGNGQLSDA----SAVTSRNQTGWHHLSLENDIKIISDVPETNVARLQSP 1206

Query: 569  ESVSPFIWSGSSASSVRLQPMSTTDIAMKVCLFSPGTYDLSNYALNWKLLTISGQGN 625
            ESVSPFIWSGSS++ ++L+P+S+T+I +++C+FSPGTYDLSNY LNW L  ++ +GN
Sbjct: 1207 ESVSPFIWSGSSSTRIQLEPLSSTEIPLQICVFSPGTYDLSNYVLNWNLQPVNNEGN 1263

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296089365|emb|CBI39137.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359481103|ref|XP_002263641.2| PREDICTED: trafficking protein particle complex subunit 8-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356503854|ref|XP_003520717.1| PREDICTED: trafficking protein particle complex subunit 8-like [Glycine max] Back     alignment and taxonomy information
>gi|449437874|ref|XP_004136715.1| PREDICTED: trafficking protein particle complex subunit 8-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356572633|ref|XP_003554472.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|356572629|ref|XP_003554470.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356572631|ref|XP_003554471.1| PREDICTED: trafficking protein particle complex subunit 8-like isoform 2 [Glycine max] Back     alignment and taxonomy information
>gi|297811763|ref|XP_002873765.1| binding protein [Arabidopsis lyrata subsp. lyrata] gi|297319602|gb|EFH50024.1| binding protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|334187712|ref|NP_001190319.1| uncharacterized protein [Arabidopsis thaliana] gi|332004886|gb|AED92269.1| uncharacterized protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
FB|FBgn02606551319 l(3)76BDm "lethal (3) 76BDm" [ 0.266 0.131 0.273 2.9e-09
UNIPROTKB|Q9Y2L51435 TRAPPC8 "Trafficking protein p 0.155 0.070 0.282 2.6e-05
FB|FBgn0260655 l(3)76BDm "lethal (3) 76BDm" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 153 (58.9 bits), Expect = 2.9e-09, Sum P(2) = 2.9e-09
 Identities = 52/190 (27%), Positives = 89/190 (46%)

Query:    26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEES 85
             E+ + V GEP+++ +   N +Q  I++S I L+ +L+  +DE+ S  N+ T E  +D  +
Sbjct:   747 ETPVAVQGEPIELAVTLSNSVQCRIALSEIDLLWKLTLDNDEVLS--NACTYEESSDSAN 804

Query:    86 KLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRLSG---- 141
             K+        S  +S  L+E        ET+  +L  TPK+ G L I+GV  R++     
Sbjct:   805 KIAVGAAIKTSCMASIKLAEQ-----AEETLHFKL--TPKLTGRLSILGVVCRVAAGADP 857

Query:   142 --SLVGVYNFESNLXXXXXXXXXXXXXSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGD 199
               SL+G   FE+                   N L   ++  LP +     P+P R  AG+
Sbjct:   858 AASLLGTLQFETQKIRPHNAKQSSQTVMD--NRLTIKLVPQLPAMNVSFTPVPNRLLAGE 915

Query:   200 LRHLVLELKN 209
             +  + + L+N
Sbjct:   916 IVPVHVTLRN 925
GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0005575 "cellular_component" evidence=ND
UNIPROTKB|Q9Y2L5 TRAPPC8 "Trafficking protein particle complex subunit 8" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003523001
SubName- Full=Chromosome undetermined scaffold_145, whole genome shotgun sequence; (691 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 649
KOG1938960 consensus Protein with predicted involvement in me 100.0
PF086261185 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC 99.93
KOG19531235 consensus Targeting complex (TRAPP) subunit [Intra 99.52
PF07919554 Gryzun: Gryzun, putative trafficking through Golgi 99.14
PF06159249 DUF974: Protein of unknown function (DUF974); Inte 98.09
COG1470513 Predicted membrane protein [Function unknown] 97.23
PF07705101 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic 96.44
PF00927107 Transglut_C: Transglutaminase family, C-terminal i 96.1
PF14874102 PapD-like: Flagellar-associated PapD-like 95.05
PF1063378 NPCBM_assoc: NPCBM-associated, NEW3 domain of alph 95.02
KOG2625348 consensus Uncharacterized conserved protein [Funct 94.67
PF05753181 TRAP_beta: Translocon-associated protein beta (TRA 91.44
PF14646426 MYCBPAP: MYCBP-associated protein family 82.02
>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=3e-37  Score=350.68  Aligned_cols=464  Identities=20%  Similarity=0.216  Sum_probs=320.3

Q ss_pred             cccccccccccchhhh-ccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCccccccccc
Q 006351            6 STARSNWLELQSKLIM-KKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEE   84 (649)
Q Consensus         6 ~~~~~~wl~~~~~~~~-~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~   84 (649)
                      .+|..+|...+-..-+ ....+.+++|+||++++.|+++|||++++.+++++|+|+|..++....+|++.. ..      
T Consensus       468 ~~~~~p~~~~ql~~~~~~~~~~~~v~v~Ge~~~l~v~~rnpl~~~~alT~~~ll~kl~~~~~s~~~Na~s~-~~------  540 (960)
T KOG1938|consen  468 FAGSQPFRPSQLLLAEFSDKFKNPVPVAGEPIKLSVTLRNPLKISIALTNSSLLWKLHLDNLSGSSNAYSH-SQ------  540 (960)
T ss_pred             hcccCCCcchhcccchhccccccccccCCcceeeEEeecCccceeccccchhhhhhccccccccccccccc-cc------
Confidence            3455556666555433 344479999999999999999999999999999999999998544333443321 10      


Q ss_pred             ccccccccccCCCCCceeeeeeeEEECCCceEEEEEEEEecceEEEEEEEEEEEE------cceeeeeEeeeeccccccc
Q 006351           85 SKLLTTTGEMNSDTSSFTLSEVDISLGGAETILVQLMVTPKVEGILKIVGVRWRL------SGSLVGVYNFESNLVKKKI  158 (649)
Q Consensus        85 ~~~p~~~~~~~~~~~~f~~~~~~i~L~p~etk~v~L~v~P~~~G~L~I~Gv~~~l------~~~v~g~~~fe~~g~RL~~  158 (649)
                       ..|+.+        .. ....++.+.+.|.+++.|+.+|+..|.|+|.|..|+.      .+.+.|...|+++|+|++.
T Consensus       541 -~~Pe~~--------~~-s~~~~~~~~~~e~~t~~L~dfp~~~g~lkii~~v~~~~~~~vd~as~yg~~~le~qgirl~~  610 (960)
T KOG1938|consen  541 -SSPELI--------DD-SAFPELLKSGEEDFTFMLRDFPRAIGILKIIRNVVNPLIEDVDAASVYGACSLEIQGIRLNN  610 (960)
T ss_pred             -cChhhh--------hh-hhHHHHHhcchhceeeeeeeccccceEEeeeeccccchhcccchhhhhcccchhhhhcchhh
Confidence             111100        00 1236889999999999999999999999999999999      5689999999999999999


Q ss_pred             ccccc-cccCCCCCceEEEEecCCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEe--eeeeecC-------
Q 006351          159 AKGRR-KVKSSPSNDLKFIVIKSLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA--EQSVAGG-------  228 (649)
Q Consensus       159 tk~r~-~~~~~pd~rL~~~V~~~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~--~P~~~~g-------  228 (649)
                      ++.++ ..+|.+|.||.+.+.+.+|+|+++|+++|+.+||||+|++.|+++|.|.+|+.+|+++  +|.+...       
T Consensus       611 ~~~~~~s~~~t~d~RL~~~~~e~lp~levs~~s~P~~lyagq~r~~~le~~nls~~P~~~v~~a~s~~~~~~l~n~s~~~  690 (960)
T KOG1938|consen  611 TKLDVTSSKLTNDTRLNILASEMLPLLEVSFTSFPQWLYAGQAREVLLELRNLSPCPAISVDLAASWPYFAVLENESHRK  690 (960)
T ss_pred             hcccccccccChHHHHHHHHHhhhhhhheeeecCcchHHHHHHHHHHHHhhhcCCCchhhHHHHhcChhhhhcccccccc
Confidence            99754 8899999999999999999999999999999999999999999999999999999999  7722211       


Q ss_pred             ---C-CCCCCCeee------ecCCCcccCCCCeEEEEEEEEecCCCceEEEEEEEEecCCCCccceEEEEEEEEEEEEee
Q 006351          229 ---N-FNKMPQAVF------SFPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGDVSSVIKYRLLRMHYNLEVLP  298 (649)
Q Consensus       229 ---~-~~~~~~~vf------~lp~~~~L~pGes~~iplwlra~~~G~~~l~lLfyYe~~~~~~~~~~R~~R~~~~i~V~p  298 (649)
                         + .++..+..+      .++.+..|.+|+++++++|+|++..+.     =++           +|            
T Consensus       691 ~~~~~a~i~~~~t~r~~~~s~~~~d~~l~g~r~rr~alW~r~~a~~~-----~~w-----------~r------------  742 (960)
T KOG1938|consen  691 GKMNAANISQQETTRFESGSGSDEDIVLDGGRRRRAALWFRLSAEAS-----KPW-----------LR------------  742 (960)
T ss_pred             cccCHhhhhhhhhhhhccccCCCcccccCCCceeeeeeeEecccccc-----cch-----------HH------------
Confidence               1 122223333      345678999999999999999995540     111           11            


Q ss_pred             eeeEEEEEeecccccceEEEEEEEEeCCCCccEEEEEEEeeeeceEEEeeCCCcccCCCcccCccceeeEEEEEeecCCC
Q 006351          299 SLNVSFQISPWSSRLQQYLVRMDVVNQTSSENFQIHQLSSVGHQWEISLLQPFDSIFPSESLFAGQALSCFFMLKNRGES  378 (649)
Q Consensus       299 SL~vs~~~~~s~s~~~~~~l~v~V~N~~~~~~~~l~Qvs~vS~~W~l~~l~~~~si~~~~~l~p~q~~~~~f~~~~~~~~  378 (649)
                             +++++.       .+...|.....-..+++++.....|.....+.-.+..++.....++.++++++...+++.
T Consensus       743 -------~~~~r~-------~~~~~n~a~~~y~~i~~~~~s~~~l~~~~~~~e~~dvpsa~~~~~~~ls~~~~~~~~~~~  808 (960)
T KOG1938|consen  743 -------QRQWRR-------ASWCLNTAKSTYSKIHWLSLSECILSKSLNLSENTDVPSAFTPSGKNLSRTSVSFIGRAV  808 (960)
T ss_pred             -------hhhhhh-------hhhhhhccccceeeeeeeehhhhhhhhhccchhhccCccccCccccccceeeeccccccc
Confidence                   001111       233334333445777777777777888877766666667667789999999999888887


Q ss_pred             CCCCCCCCCCcceeeceeeecCCCccccccCCCcchhhhhhhhhcccc--ccCCCCcceEEEEeccCccCCCCCCCCCce
Q 006351          379 STSSDDTSSPSRLLGSDVSLQGTADTLFDISGSPLADFHAHERLLQRV--SQDDTNTVDFIFISQPSKSDSDSGISDPQH  456 (649)
Q Consensus       379 ~~~~~~~~s~~~~~~sdv~l~~~~~~~~~~s~~P~~df~~~~r~~~~~--~~~~~~~ldliv~W~a~~~~~~~~~~~~~~  456 (649)
                      +..++.      -++..         ++..+..|+++||......-..  .......=+|+++|+|++++|..  +. ..
T Consensus       809 ~~e~e~------~i~~~---------~~~~s~~~~~~~~~~~st~~~~~~~~~~~~~~~i~~~w~a~vv~~eg--~~-~~  870 (960)
T KOG1938|consen  809 EIESEQ------PIVAR---------LVPLSQGETIKFFWLTSTTEVTPPAEIQSTMDTIVILWKANVVNDEG--VT-RF  870 (960)
T ss_pred             cccccC------Ccccc---------eeeccCCcchhhhhhccccccCCChhhccChhhHHHhcccccccccc--ee-ee
Confidence            754443      12222         4445566777777652211000  11111123489999999998863  11 23


Q ss_pred             eeecccccccccCCCceEEEEeCCCeEeccCCCCceeEEEEEEEEeCCCccEeEEEEccCCCCCCCCCcccCCCCCCCCC
Q 006351          457 LFSHHACHCSILGKTPITWLVDGPRTLHHNFNASFCEVNLKMTIYNSSDAAMFVRVNTFDSPSSSGQTSEATSPRSAVPS  536 (649)
Q Consensus       457 ~Gqhh~~~~~~~~~~pI~~~l~~p~~i~HdF~~~~C~vpV~l~i~N~s~~~v~v~i~~~~~~~~~~~~~~~~~~~~~~~~  536 (649)
                      +|                    ++-.+.|+|..+.|.+..++.+.|.+...-.    +.+.-+..+        .+....
T Consensus       871 ~g--------------------~~~~l~~~f~~~~~~~~~~~s~~~~~~~i~~----t~~~~~~~p--------~t~~~~  918 (960)
T KOG1938|consen  871 IG--------------------PFVKLKKLFKTDSCLSSLRISCETTSKEISH----TADHLCELP--------ITLLIS  918 (960)
T ss_pred             cC--------------------CcceehhhccCCcccccchhhhhhhhhhcch----hhhhhhccc--------chhhhc
Confidence            33                    4555666666666666666666666642111    222111111        122344


Q ss_pred             CCCCCcccccccccceecccCCCcccccCCcccccCceEEecccceeEEeCCCceEEEEeEEEE
Q 006351          537 GNQAGWHDVPVLTDIKVTSQLPLNQVKRSSLLESVSPFIWSGSSASSVRLQPMSTTDIAMKVCL  600 (649)
Q Consensus       537 ~~~~gw~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~f~w~G~~~~~~~l~p~e~~~v~l~~~~  600 (649)
                      +|+.||.+|+....-                    .  .|+|+..||+|++++|.+.++|+|||
T Consensus       919 n~~~~~~~v~~~~~~--------------------~--~w~~~~~~k~q~~~~~~~~~~m~~~~  960 (960)
T KOG1938|consen  919 NNDLAWRPVSVSIEE--------------------S--SWIGRPVYKQQIGILEEASLEMKWKI  960 (960)
T ss_pred             CCcccccccchhhhh--------------------h--cccCCcceeeeecccccceeeeEecC
Confidence            566677666542110                    0  29999999999999999999999986

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway Back     alignment and domain information
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function Back     alignment and domain information
>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins Back     alignment and domain information
>COG1470 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins Back     alignment and domain information
>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds Back     alignment and domain information
>PF14874 PapD-like: Flagellar-associated PapD-like Back     alignment and domain information
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known Back     alignment and domain information
>KOG2625 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins Back     alignment and domain information
>PF14646 MYCBPAP: MYCBP-associated protein family Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 52.9 bits (126), Expect = 3e-07
 Identities = 69/485 (14%), Positives = 155/485 (31%), Gaps = 105/485 (21%)

Query: 9   RSNWLELQS-KLI----MKKFEESNICVAGEPVK-VDIEFKNPLQIP-ISISN------- 54
           R   LEL+  K +    +    ++   VA +      ++ K   +I  +++ N       
Sbjct: 141 RQALLELRPAKNVLIDGVLGSGKT--WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV 198

Query: 55  ISLICELSTRSDEM---ESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSEV-DISL 110
           + ++ +L  + D      SD +S+     +  +++L         +     L  V +   
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA 258

Query: 111 GGAETILVQLMVTPKVEGILKIVGVRWRLSGSLVGVYNFESNLVKKKIAKGRRKVKSSPS 170
             A  +  ++++T + + +   +        SL    +    L   +             
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD---HHSMTLTPDE------------V 303

Query: 171 NDL--KFIVIK--SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNA-EQSV 225
             L  K++  +   LP+     +P      A  +R  +    N    +  K+T   E S+
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL 363

Query: 226 AGGNFNKMPQAVFS----FPEGISIQGETPLLWPLWYRAAVPGKISLSITIYYEMGD-VS 280
                 +  + +F     FP    I   T LL  +W+             I  ++   V+
Sbjct: 364 NVLEPAEY-RKMFDRLSVFPPSAHI--PTILLSLIWFD-----------VIKSDVMVVVN 409

Query: 281 SVIKYRLLRMHYNLEV--LPSLNVSFQISPWSSRLQQYLVRMDVVNQ-TSSENFQIHQLS 337
            + KY L+          +PS+ +  ++        +Y +   +V+     + F    L 
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKV----KLENEYALHRSIVDHYNIPKTFDSDDLI 465

Query: 338 S----------VG-HQWEISLLQPFDSIFPSESLFAGQALSCFFM---LKNRGESSTSSD 383
                      +G H   I   +    +F    +F    L   F+   +++     T+ +
Sbjct: 466 PPYLDQYFYSHIGHHLKNIEHPERMT-LFR--MVF----LDFRFLEQKIRHDS---TAWN 515

Query: 384 DTSSPSRLLGSDVSLQGT----ADTLFDISGSPLADF----------HAHERLLQRVSQD 429
            + S    L   +          D  ++   + + DF            +  LL+     
Sbjct: 516 ASGSILNTL-QQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMA 574

Query: 430 DTNTV 434
           +   +
Sbjct: 575 EDEAI 579

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
2qsv_A220 Uncharacterized protein; MCSG, structural genomics 95.98
3idu_A127 Uncharacterized protein; all beta-protein, structu 95.88
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 94.56
2xzz_A102 Protein-glutamine gamma-glutamyltransferase K; 2.3 94.32
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 94.1
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 93.9
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 93.27
2l0d_A114 Cell surface protein; structural genomics, northea 92.53
1g0d_A695 Protein-glutamine gamma-glutamyltransferase; tissu 92.2
1ex0_A731 Coagulation factor XIII A chain; transglutaminase, 90.99
2q3z_A687 Transglutaminase 2; transglutaminase 2, tissue tra 90.09
1vjj_A692 Protein-glutamine glutamyltransferase E; transglut 88.67
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 87.14
2ys4_A122 Hydrocephalus-inducing protein homolog; hydin, PAP 87.09
3isy_A120 Bsupi, intracellular proteinase inhibitor; intrace 85.8
2e6j_A112 Hydin protein; PAPD, structural genomics, NPPSFA, 84.1
>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis} Back     alignment and structure
Probab=95.98  E-value=0.34  Score=47.71  Aligned_cols=180  Identities=13%  Similarity=0.090  Sum_probs=111.0

Q ss_pred             hccccccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCc
Q 006351           21 MKKFEESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSS  100 (649)
Q Consensus        21 ~~~~~~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~  100 (649)
                      +...-++..+.+|++....+.++|.=+-||.++.++|     +.  ..                                
T Consensus         6 ~~~~idFg~v~~g~~~~~~~~i~N~g~~pl~i~~~~~-----p~--~~--------------------------------   46 (220)
T 2qsv_A            6 SNARLLFPISMPEDEGVVRLVVNNTDESDLQVAVVSL-----PS--FV--------------------------------   46 (220)
T ss_dssp             SCSEEECCSBCTTCCCEEEEEEEECSSSCEEEEEEEC-----CT--TE--------------------------------
T ss_pred             ecCeeEcccccCCCcceEEEEEEeCCCCceEEEeccC-----CC--ce--------------------------------
Confidence            3456778888999999999999999999999998865     11  01                                


Q ss_pred             eeeeeeeEEECCCceEEEEEEEEecce---EEEEEEEEEEEEc----ceeeeeEeeeecccccccccccccccCCCCCce
Q 006351          101 FTLSEVDISLGGAETILVQLMVTPKVE---GILKIVGVRWRLS----GSLVGVYNFESNLVKKKIAKGRRKVKSSPSNDL  173 (649)
Q Consensus       101 f~~~~~~i~L~p~etk~v~L~v~P~~~---G~L~I~Gv~~~l~----~~v~g~~~fe~~g~RL~~tk~r~~~~~~pd~rL  173 (649)
                       ......-.|.|+++-.|.++.-++.-   |..+= -+.....    +... ...+.+.                     
T Consensus        47 -~~~~~~~~I~PG~~g~I~vt~~~~~~~~~G~~~~-~i~v~~~~~~~~~~~-~~~i~v~---------------------  102 (220)
T 2qsv_A           47 -SLDDRAFRLQAREPRELNLSLAVPRNMPPGMKDE-PLVLEVTSPETGKKA-VDSVMVS---------------------  102 (220)
T ss_dssp             -ECSCCEEEECSSSCEEEEEEECCCTTCCSEEEEE-EEEEEEECTTTCCEE-EEEEEEE---------------------
T ss_pred             -EeeeCcceeCCCCceEEEEEEcchhcccCCceee-EEEEEEEcCCCCccc-ccEEEEE---------------------
Confidence             00124677889998888888887764   43221 0111111    1111 1122221                     


Q ss_pred             EEEEec--------CCCeEEEEEccCCcceecceEEEEEEEEEecccccccceEEeeeeeecCCCCCCCCeeeecCCCcc
Q 006351          174 KFIVIK--------SLPKLEGLIHPLPERAYAGDLRHLVLELKNQSDFSVKKMTNAEQSVAGGNFNKMPQAVFSFPEGIS  245 (649)
Q Consensus       174 ~~~V~~--------~~P~L~v~~~~lP~~ll~GEi~~~~l~L~N~g~~pv~~l~v~~P~~~~g~~~~~~~~vf~lp~~~~  245 (649)
                       ..+.+        .+|.+++. ..+.-.-+.|+.....++|+|.|..||.=-.+..   ++|+      .+..++ ...
T Consensus       103 -g~v~p~~~~~~~~~~~~i~~~-~~~dfG~i~g~~~~~~f~i~N~G~~pL~I~~v~~---scgc------t~~~~~-~~~  170 (220)
T 2qsv_A          103 -LPLVDNFPALTAAQTGVMELS-TYLDMGQLDGETTKAAIEIRNVGAGPLRLHSVTT---RNPA------LTAVPD-RTE  170 (220)
T ss_dssp             -EEECCCGGGCCGGGCCCEECC-CEEEEEECTTSCEEEEEEEEECSSSCEEEEEEEE---CSTT------EEEEES-CSE
T ss_pred             -EEEcccchhhhhccCCEEEEE-eEEeeeccCCCeEEEEEEEEECCCCCEEEEEEEe---CCCC------EeeecC-Ccc
Confidence             22222        35666554 3333332238999999999999999876333330   1110      122232 358


Q ss_pred             cCCCCeEEEEEEEEecCC-Cc----eEEEEEEEEe
Q 006351          246 IQGETPLLWPLWYRAAVP-GK----ISLSITIYYE  275 (649)
Q Consensus       246 L~pGes~~iplwlra~~~-G~----~~l~lLfyYe  275 (649)
                      |+||++.++.+.+.+... |.    ..-.+.+|-.
T Consensus       171 i~PGe~~~i~v~~~~~~~~g~~~~~~~~~i~v~~N  205 (220)
T 2qsv_A          171 IKPGGSTLLRIAVDPQVMKAEGWQSIAADISIICN  205 (220)
T ss_dssp             ECTTCEEEEEEEECHHHHHHTTCSEEEEEEEEEES
T ss_pred             CCCCCEEEEEEEEecCCCCCcccceeccEEEEEEC
Confidence            999999999999998744 77    6666666553
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens} Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans} Back     alignment and structure
>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 Back     alignment and structure
>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A Back     alignment and structure
>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A* Back     alignment and structure
>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A* Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis} Back     alignment and structure
>2e6j_A Hydin protein; PAPD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
d1g0da3101 Transglutaminase, two C-terminal domains {Red sea 96.73
d1ex0a3100 Transglutaminase, two C-terminal domains {Human (H 96.68
d1vjja399 Transglutaminase, two C-terminal domains {Human (H 96.02
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 95.96
d1w8oa1103 Sialidase, "linker" domain {Micromonospora viridif 92.49
d1vjja399 Transglutaminase, two C-terminal domains {Human (H 86.39
d2q3za398 Transglutaminase, two C-terminal domains {Human (H 83.94
d1ex0a3100 Transglutaminase, two C-terminal domains {Human (H 83.8
>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Transglutaminase, two C-terminal domains
family: Transglutaminase, two C-terminal domains
domain: Transglutaminase, two C-terminal domains
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=96.73  E-value=0.0048  Score=51.98  Aligned_cols=89  Identities=18%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             ccceEEcCceEEEEEEEeCCccCcEEeeeEEEEEEEecCCCccccCCCCCcccccccccccccccccccCCCCCceeeee
Q 006351           26 ESNICVAGEPVKVDIEFKNPLQIPISISNISLICELSTRSDEMESDSNSSTTELQNDEESKLLTTTGEMNSDTSSFTLSE  105 (649)
Q Consensus        26 ~~~~~vvgEpi~V~V~l~NPL~ipl~l~~I~L~~~f~~~~~~~~s~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~f~~~~  105 (649)
                      -...+++|+++.++|+|+|||.++|.=--+++..    .  ..                 ..+              ...
T Consensus         8 v~g~~~v~~~~~v~vsf~NPL~~~L~~c~~~vEG----~--GL-----------------~~~--------------~~~   50 (101)
T d1g0da3           8 VPGKAVVWEPLTAYVSFTNPLPVPLKGGVFTLEG----A--GL-----------------LSA--------------TQI   50 (101)
T ss_dssp             CCSCEETTCCEEEEEEEECCSSSCEESCEEEEEE----T--TT-----------------EEE--------------EEE
T ss_pred             eCCCcCcCCeEEEEEEEECCCCCeecCEEEEEEc----C--CC-----------------Ccc--------------cEE
Confidence            3455889999999999999999987633333321    1  00                 000              001


Q ss_pred             e-eEEECCCceEEEEEEEEecceEEEEEEEE-EEEEcceeeeeEeeee
Q 006351          106 V-DISLGGAETILVQLMVTPKVEGILKIVGV-RWRLSGSLVGVYNFES  151 (649)
Q Consensus       106 ~-~i~L~p~etk~v~L~v~P~~~G~L~I~Gv-~~~l~~~v~g~~~fe~  151 (649)
                      . .=.++|+|+-++++.++|++.|.=+|..- ..+-...+.|...+.+
T Consensus        51 ~~~~~v~p~~~~~~~~~~~P~~~G~~~L~a~f~s~~l~~v~G~~~v~V   98 (101)
T d1g0da3          51 HVNGAVAPSGKVSVKLSFSPMRTGVRKLLVDFDSDRLKDVKGVTTVVV   98 (101)
T ss_dssp             ECSSEECTTCEEEEEEEECCSSCEEEEEEEEEECSSCCCEEEEEEEEE
T ss_pred             EecCCcCCCCEEEEEEEEEcCCcccEEEEEEEeCchhcCceeEEEEEE
Confidence            1 12689999999999999999998776532 1111123666665554
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]} Back     information, alignment and structure
>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]} Back     information, alignment and structure
>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]} Back     information, alignment and structure
>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]} Back     information, alignment and structure