Citrus Sinensis ID: 006352

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------65
MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDIITLEDDIDEEEQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
cccccccEEEEcccccHHHcHHHHHHHcccccEEEEEcccccHHHHHHHHccccccccHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHcccHHHHHHcHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccHHcccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccccEEEccHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHcccEEEccccHHHHHHHHccccHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccEccHHHHHHHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccHccccHHccccccccHHHHHHHHHcccccHHHccccHHHHcccccHHHHHccccccHHHHHcHHHHHHHHHHHHHHHccccccHEEccccEEEEccccccccccccccccccHHHHHccccccHHHHcHHHcccccHHHHHHHccHHHcccccHccHHHHHHHHcccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEcccccccccccccccHHccccccccccccccccccccccccHcHccccHHHHcccccccccccccccccccccccccccccHHHHHHHcEccccccHcccccccHcccccccccccccccccccccccccccccccccccccccccccccccc
MSLRTEDFVVDTLKLRVQVgpylrevfkdptkkkvmhgadrDIVWLQRDFGIYLcnmfdtgqaSRVLKLERNSLEYLLHHFcgvnankeyqnadwrvrplpdEMLRYAREDTHYLLYIYDIMKIKlssmpkesensdtpltevYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIaraddestgyvlpnrTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDtssnlkipnvgresvdgvdalvgttmphppaytqlkqeppkvgssvaeldrnglgsfahpgeaiasenkeathistlsssgqsrdlnackspsprVTEAAVQALkkpnrgfgallgnpkrkfdgekkdKEAMKLEQikssvnlpfhsifardeqlkpvdvmksepnkpdlpfpssfgsgeqtkpiieesnrvtvvsqseepapaarpdtediitLEDDIDEEEqnlgnletasapgedgsagsalemgkqdetmslsdlSTSFQECFHsannnrkpgkperseepsgflqlkpfdFEAARKQIEFGedakeksagvdgnkrkpvnsgdkkkvsAVDQaqkddgtkelsqgrrrsafpatgnrsatfr
mslrtedfvvdtlklrvqvgpylrevfkdptkkkvmhgadRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCgvnankeyqnadwrvrPLPDEMLRYAREDTHYLLYIYDIMKIKLSSmpkesensdtpltevyKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIAraddestgyvlpnrtlieiakqlptTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLvldtssnlkipnvgrESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHIStlsssgqsrdlnACKSPSPRVTEAAVQalkkpnrgfgallgnpkrkfdgekKDKEAMKLEqikssvnlpfhsIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESnrvtvvsqseepapaarpdteDIITLEDDIDEEEQNLGNletasapgedgSAGSALEMGKQDETMSLSDLSTSFQECFHSannnrkpgkperseepsgflqLKPFDFEAARKQIEFgedakeksagvdgnkrkpvnsgdkkkvsavdqaqkddgtkelsqgrrrsafpatgnrsatfr
MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPdtediitleddideeeQNLGNLETASAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
******DFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKL**************TEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQK**************VLVLD********************L***************************************************************************************************************************F**I***************************************************************************************************************************************************************************************************************************
*SLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKL************RYMGPVLSIIKNSMQ*********************************************DGVDALVGTTMPHPPAYTQLKQE****************************************************************************************************************************************************************************************************************************************************************DFEAA********************************************************************
MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSS**********PLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEE**********VLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQL**********VAELDRNGLGSFAHPGEAIASENKE*****************************AVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNR***************PDTEDIITLEDDIDEEEQNLGNLETAS**********ALEMGKQDETMSLSDLSTSFQECFHSAN**************SGFLQLKPFDFEAARKQIEFGE*********************************************RSAFP**********
****TEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQS************************************************************************************************************************************************************************************************************FLQLKPFDFEAARKQIEFG*************************************************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYMGPVLSIxxxxxxxxxxxxxxxxxxxxxRMEVASEETEVLVLDTSSNLKIPNVGRESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAHPGEAIASENKEATHISTLSSSGQSRDLNACKSPSPRVTEAAVQALKKPNRGFGALLGNPKRKFDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQTKPIIEESNRVTVVSQSEEPAPAARPDTEDxxxxxxxxxxxxxxxxxxxxxSAPGEDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDFEAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAFPATGNRSATFR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query649 2.2.26 [Sep-21-2011]
P56960887 Exosome component 10 OS=M yes no 0.331 0.242 0.525 5e-63
Q01780885 Exosome component 10 OS=H yes no 0.331 0.242 0.515 9e-62
Q10146777 Exosome complex exonuclea yes no 0.369 0.308 0.406 6e-46
Q12149733 Exosome complex exonuclea yes no 0.423 0.375 0.355 7e-40
A6V8R6376 Ribonuclease D OS=Pseudom yes no 0.305 0.526 0.293 9e-13
P44442399 Ribonuclease D OS=Haemoph yes no 0.289 0.471 0.264 2e-09
A7HYE5384 Ribonuclease D OS=Parviba yes no 0.309 0.523 0.253 2e-08
Q6G329406 Ribonuclease D OS=Bartone yes no 0.318 0.509 0.244 1e-07
Q0BVP4395 Ribonuclease D OS=Granuli yes no 0.314 0.516 0.252 1e-07
B8EN54399 Ribonuclease D OS=Methylo yes no 0.318 0.518 0.286 3e-07
>sp|P56960|EXOSX_MOUSE Exosome component 10 OS=Mus musculus GN=Exosc10 PE=1 SV=2 Back     alignment and function desciption
 Score =  242 bits (618), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 115/219 (52%), Positives = 154/219 (70%), Gaps = 4/219 (1%)

Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S RTEDF+VDTL+LR  +   L E   DP   KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389

Query: 61  GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
            QA+R+L L R+SL++LL  +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449

Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
            M+++L    +   +    L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQ
Sbjct: 450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506

Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
           L     L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct: 507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
Putative catalytic component of the RNA exosome complex which has 3'->5' exoribonuclease activity and participates in a multitude of cellular RNA processing and degradation events. In the nucleus, the RNA exosome complex is involved in proper maturation of stable RNA species such as rRNA, snRNA and snoRNA, in the elimination of RNA processing by-products and non-coding 'pervasive' transcripts, such as antisense RNA species and promoter-upstream transcripts (PROMPTs), and of mRNAs with processing defects, thereby limiting or excluding their export to the cytoplasm. The RNA exosome may be involved in Ig class switch recombination (CSR) and/or Ig variable region somatic hypermutation (SHM) by targeting AICDA deamination activity to transcribed dsDNA substrates. In the cytoplasm, the RNA exosome complex is involved in general mRNA turnover and specifically degrades inherently unstable mRNAs containing AU-rich elements (AREs) within their 3' untranslated regions, and in RNA surveillance pathways, preventing translation of aberrant mRNAs. It seems to be involved in degradation of histone mRNA. EXOSC10 has 3'-5' exonuclease activity (By similarity). EXOSC10 is required for nucleolar localization of C1D and probably mediates the association of SKIV2L2, C1D and MPP6 wth the RNA exosome involved in the maturation of 5.8S rRNA.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 1EC: .EC: 1EC: 3EC: .EC: -
>sp|Q01780|EXOSX_HUMAN Exosome component 10 OS=Homo sapiens GN=EXOSC10 PE=1 SV=2 Back     alignment and function description
>sp|Q10146|RRP6_SCHPO Exosome complex exonuclease rrp6 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rrp6 PE=3 SV=2 Back     alignment and function description
>sp|Q12149|RRP6_YEAST Exosome complex exonuclease RRP6 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RRP6 PE=1 SV=1 Back     alignment and function description
>sp|A6V8R6|RND_PSEA7 Ribonuclease D OS=Pseudomonas aeruginosa (strain PA7) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|P44442|RND_HAEIN Ribonuclease D OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rnd PE=3 SV=1 Back     alignment and function description
>sp|A7HYE5|RND_PARL1 Ribonuclease D OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|Q6G329|RND_BARHE Ribonuclease D OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=rnd PE=3 SV=1 Back     alignment and function description
>sp|Q0BVP4|RND_GRABC Ribonuclease D OS=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) GN=rnd PE=3 SV=2 Back     alignment and function description
>sp|B8EN54|RND_METSB Ribonuclease D OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=rnd PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
359481017 931 PREDICTED: exosome component 10-like [Vi 0.956 0.667 0.543 0.0
296085897 901 unnamed protein product [Vitis vinifera] 0.956 0.689 0.543 0.0
224123860 858 predicted protein [Populus trichocarpa] 0.881 0.666 0.540 1e-179
255569470 857 3'-5' exonuclease, putative [Ricinus com 0.872 0.660 0.514 1e-179
449462768 936 PREDICTED: exosome component 10-like [Cu 0.944 0.654 0.527 1e-178
356565747 889 PREDICTED: exosome component 10-like [Gl 0.901 0.658 0.526 1e-177
449522510 935 PREDICTED: exosome component 10-like [Cu 0.942 0.654 0.523 1e-177
224144831 855 predicted protein [Populus trichocarpa] 0.878 0.666 0.527 1e-172
356514039 877 PREDICTED: exosome component 10-like [Gl 0.887 0.656 0.495 1e-170
297805136 867 hypothetical protein ARALYDRAFT_355577 [ 0.856 0.641 0.468 1e-155
>gi|359481017|ref|XP_002269553.2| PREDICTED: exosome component 10-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  652 bits (1683), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 365/671 (54%), Positives = 458/671 (68%), Gaps = 50/671 (7%)

Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S RTEDFVVDTLKLR+ VGPYLREVFKDPTKKKVMHGADRDI+WLQRDFGIY+CNMFDT
Sbjct: 289 ISTRTEDFVVDTLKLRIHVGPYLREVFKDPTKKKVMHGADRDIIWLQRDFGIYICNMFDT 348

Query: 61  GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
           GQASRVLKLERNSLE+LLHH+CGV ANKEYQN DWR+RPLP EMLRYAREDTHYLL+IYD
Sbjct: 349 GQASRVLKLERNSLEHLLHHYCGVTANKEYQNGDWRLRPLPHEMLRYAREDTHYLLHIYD 408

Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
           +M+ +L SM  E ENS+  L EVYKRS+D+C QLYEKELL+++SYL+ YGLQGA  NAQQ
Sbjct: 409 LMRTQLLSMA-ELENSNALLLEVYKRSFDICMQLYEKELLTDSSYLYTYGLQGAHFNAQQ 467

Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
           LA+VAGL EWRDV+ARA+DESTGY+LPN+TL+EIAKQ+P T +KLRRLLKSKH Y+ER +
Sbjct: 468 LAIVAGLFEWRDVVARAEDESTGYILPNKTLLEIAKQMPVTTSKLRRLLKSKHPYVERNL 527

Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEET-------EVLVLDTSSNLKIPNVG 293
           GPV+SII++S+ NAA FE  AQ LKE  +  ASE+        E L  ++ ++++  +  
Sbjct: 528 GPVVSIIRHSILNAAAFEAAAQHLKEGHIGTASEDNTVDTTGFEALPSESPTSIRAADAR 587

Query: 294 RESVDGVDALVGTTMPHPPAYTQLKQEPPKVGSSVAELDRNGLGSFAH-PGEAIASENKE 352
            ES D  + + G        +   K+   + GS++      G G  +  PGE+   ++++
Sbjct: 588 AESFDTDNVINGGKTDKLQTFVSAKEYHMEPGSTIDGPGSKGQGGSSEPPGESKEVKDEK 647

Query: 353 ATHI-----STLSSSGQSRDLN--ACKSPSPRVTEAAVQALKKPNRGFGALLGN--PKRK 403
            + I      T +SSGQSRD +     S S +VTE  VQ LKKPNR FG+LLGN   KRK
Sbjct: 648 DSFIPEVARETPASSGQSRDTDTHTSVSQSEKVTEVTVQLLKKPNRAFGSLLGNSASKRK 707

Query: 404 FDGEKKDKEAMKLEQIKSSVNLPFHSIFARDEQLKPVDVMKSEPNKPDLPFPSSFGSGEQ 463
            + + K KE +KLEQIKSSVNLPFHS               S  N+ +L           
Sbjct: 708 LNSDPKGKEDIKLEQIKSSVNLPFHSF--------------SGGNREEL----------- 742

Query: 464 TKPIIEESNRVTVVSQSEEP--APAARPDTEDIITLEDDIDEEEQNLGNLETASAP---G 518
           +K   EE  +V     SEEP   PA+R D E+II  E++   +E   GN   A+      
Sbjct: 743 SKLDTEEHTKVLETQGSEEPLAVPASRNDLEEIIMFEENSGSDESVNGNSGAANEQLEGK 802

Query: 519 EDGSAGSALEMGKQDETMSLSDLSTSFQECFHSANNNRKPGKPERSEEPSGFLQLKPFDF 578
           ED   GS LEM + +E MSL+DLS+ FQ+C  S N  RK  + E+S+E +G LQ+KPFD+
Sbjct: 803 EDNPKGSGLEMDEGNEPMSLTDLSSGFQKCSQSLNETRKARRVEKSQESNGLLQVKPFDY 862

Query: 579 EAARKQIEFGEDAKEKSAGVDGNKRKPVNSGDKKKVSAVDQAQKDDGTKELSQGRRRSAF 638
           EAARKQ+ FGED  E+S G +G +   V+S  KK+     + Q +D T + +QGRRR AF
Sbjct: 863 EAARKQVRFGEDP-EESRGKEG-RGGLVDSVSKKRSLGKGRVQGEDETGDYAQGRRRQAF 920

Query: 639 PATGNRSATFR 649
           PATGNRS TFR
Sbjct: 921 PATGNRSVTFR 931

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|296085897|emb|CBI31221.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224123860|ref|XP_002319182.1| predicted protein [Populus trichocarpa] gi|222857558|gb|EEE95105.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255569470|ref|XP_002525702.1| 3'-5' exonuclease, putative [Ricinus communis] gi|223535002|gb|EEF36685.1| 3'-5' exonuclease, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449462768|ref|XP_004149112.1| PREDICTED: exosome component 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356565747|ref|XP_003551099.1| PREDICTED: exosome component 10-like [Glycine max] Back     alignment and taxonomy information
>gi|449522510|ref|XP_004168269.1| PREDICTED: exosome component 10-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224144831|ref|XP_002325430.1| predicted protein [Populus trichocarpa] gi|222862305|gb|EEE99811.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356514039|ref|XP_003525715.1| PREDICTED: exosome component 10-like [Glycine max] Back     alignment and taxonomy information
>gi|297805136|ref|XP_002870452.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] gi|297316288|gb|EFH46711.1| hypothetical protein ARALYDRAFT_355577 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query649
MGI|MGI:1355322887 Exosc10 "exosome component 10" 0.331 0.242 0.525 6.8e-63
UNIPROTKB|E1C525910 EXOSC10 "Uncharacterized prote 0.331 0.236 0.534 1.8e-62
RGD|2323986859 LOC100366273 "rCG30986-like" [ 0.329 0.249 0.520 7e-61
UNIPROTKB|D4A1X2884 LOC100366273 "Protein LOC10036 0.329 0.242 0.520 1.2e-60
UNIPROTKB|Q01780885 EXOSC10 "Exosome component 10" 0.331 0.242 0.515 6.2e-60
UNIPROTKB|F1PI20908 EXOSC10 "Uncharacterized prote 0.331 0.236 0.534 1.2e-56
UNIPROTKB|A7E323702 EXOSC10 "Uncharacterized prote 0.331 0.306 0.525 1.2e-56
UNIPROTKB|B4DKG8679 EXOSC10 "Exosome component 10" 0.331 0.316 0.515 4.2e-56
UNIPROTKB|F1RHR9886 EXOSC10 "Uncharacterized prote 0.331 0.242 0.520 2.7e-55
ZFIN|ZDB-GENE-040426-781899 exosc10 "exosome component 10" 0.402 0.290 0.436 4e-55
MGI|MGI:1355322 Exosc10 "exosome component 10" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
 Score = 589 (212.4 bits), Expect = 6.8e-63, Sum P(2) = 6.8e-63
 Identities = 115/219 (52%), Positives = 154/219 (70%)

Query:     1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
             +S RTEDF+VDTL+LR  +   L E   DP   KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct:   331 ISTRTEDFIVDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 389

Query:    61 GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
              QA+R+L L R+SL++LL  +CGV +NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct:   390 HQAARLLNLARHSLDHLLRLYCGVESNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 449

Query:   121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
              M+++L    +   +    L  V++RS D+C + + K + ++ SYL +Y  Q   LN+QQ
Sbjct:   450 RMRLELW---ERGNHQPVQLQVVWQRSRDICLKKFVKPIFTDESYLELYRKQKKHLNSQQ 506

Query:   181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
             L     L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct:   507 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 545
GO:0000166 "nucleotide binding" evidence=IEA
GO:0000176 "nuclear exosome (RNase complex)" evidence=IEA
GO:0000178 "exosome (RNase complex)" evidence=ISO
GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=ISO
GO:0000460 "maturation of 5.8S rRNA" evidence=ISO
GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=ISO
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0003723 "RNA binding" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0004518 "nuclease activity" evidence=IEA
GO:0004527 "exonuclease activity" evidence=IEA
GO:0004532 "exoribonuclease activity" evidence=ISO
GO:0005622 "intracellular" evidence=IEA
GO:0005634 "nucleus" evidence=ISO
GO:0005730 "nucleolus" evidence=ISO;TAS
GO:0005737 "cytoplasm" evidence=ISO
GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA
GO:0006364 "rRNA processing" evidence=IEA
GO:0006396 "RNA processing" evidence=IEA
GO:0008408 "3'-5' exonuclease activity" evidence=IEA
GO:0009048 "dosage compensation by inactivation of X chromosome" evidence=IMP
GO:0016787 "hydrolase activity" evidence=IEA
GO:0035327 "transcriptionally active chromatin" evidence=ISO
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0071028 "nuclear mRNA surveillance" evidence=ISO
GO:0071034 "CUT catabolic process" evidence=ISO
GO:0071035 "nuclear polyadenylation-dependent rRNA catabolic process" evidence=ISO
GO:0071044 "histone mRNA catabolic process" evidence=ISO
GO:0071048 "nuclear retention of unspliced pre-mRNA at the site of transcription" evidence=ISO
UNIPROTKB|E1C525 EXOSC10 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|2323986 LOC100366273 "rCG30986-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|D4A1X2 LOC100366273 "Protein LOC100366273" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q01780 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1PI20 EXOSC10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|A7E323 EXOSC10 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|B4DKG8 EXOSC10 "Exosome component 10" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RHR9 EXOSC10 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-781 exosc10 "exosome component 10" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.1.13LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIII.2130.1
hypothetical protein (856 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
cd06147192 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease d 2e-81
pfam01612172 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease 1e-41
COG0349361 COG0349, Rnd, Ribonuclease D [Translation, ribosom 2e-41
cd06142178 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domai 1e-36
smart00474172 smart00474, 35EXOc, 3'-5' exonuclease 9e-32
cd06129161 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease doma 2e-29
TIGR01388367 TIGR01388, rnd, ribonuclease D 1e-17
cd06148197 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease dom 9e-15
pfam0057068 pfam00570, HRDC, HRDC domain 2e-14
smart0034181 smart00341, HRDC, Helicase and RNase D C-terminal 8e-10
cd06146193 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease d 7e-08
cd09018150 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' e 1e-07
PRK10829373 PRK10829, PRK10829, ribonuclease D; Provisional 2e-07
cd06141170 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain o 5e-06
COG0749593 COG0749, PolA, DNA polymerase I - 3'-5' exonucleas 2e-04
PRK05755880 PRK05755, PRK05755, DNA polymerase I; Provisional 7e-04
cd06140178 cd06140, DNA_polA_I_Bacillus_like_exo, inactive DE 0.004
>gnl|CDD|99850 cd06147, Rrp6p_like_exo, DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information 
 Score =  255 bits (653), Expect = 2e-81
 Identities = 82/146 (56%), Positives = 103/146 (70%), Gaps = 1/146 (0%)

Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S R ED++VDTLKLR      L EVF DP   KV HGAD DI+WLQRDFG+Y+ N+FDT
Sbjct: 48  ISTREEDYIVDTLKLR-DDMHILNEVFTDPNILKVFHGADSDIIWLQRDFGLYVVNLFDT 106

Query: 61  GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
           GQA+RVL L R+SL YLL  +C V+A+K+YQ ADWR+RPLP+EM++YAREDTHYLLYIYD
Sbjct: 107 GQAARVLNLPRHSLAYLLQKYCNVDADKKYQLADWRIRPLPEEMIKYAREDTHYLLYIYD 166

Query: 121 IMKIKLSSMPKESENSDTPLTEVYKR 146
            ++ +L         +         R
Sbjct: 167 RLRNELLERANALAPNLLESVLNCSR 192

Yeast Rrp6p and its human homolog, the polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100), are exosome-associated proteins involved in the degradation and processing of precursors to stable RNAs. Both proteins contain a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PM/Scl-100, an autoantigen present in the nucleolar compartment of the cell, reacts with autoantibodies produced by about 50% of patients with polymyositis-scleroderma overlap syndrome. Length = 192
>gnl|CDD|216604 pfam01612, DNA_pol_A_exo1, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|223426 COG0349, Rnd, Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|176654 cd06142, RNaseD_exo, DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>gnl|CDD|214681 smart00474, 35EXOc, 3'-5' exonuclease Back     alignment and domain information
>gnl|CDD|176650 cd06129, RNaseD_like, DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|130455 TIGR01388, rnd, ribonuclease D Back     alignment and domain information
>gnl|CDD|99851 cd06148, Egl_like_exo, DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>gnl|CDD|201312 pfam00570, HRDC, HRDC domain Back     alignment and domain information
>gnl|CDD|128635 smart00341, HRDC, Helicase and RNase D C-terminal Back     alignment and domain information
>gnl|CDD|176655 cd06146, mut-7_like_exo, DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>gnl|CDD|176656 cd09018, DEDDy_polA_RNaseD_like_exo, DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>gnl|CDD|236771 PRK10829, PRK10829, ribonuclease D; Provisional Back     alignment and domain information
>gnl|CDD|176653 cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>gnl|CDD|223820 COG0749, PolA, DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|235591 PRK05755, PRK05755, DNA polymerase I; Provisional Back     alignment and domain information
>gnl|CDD|176652 cd06140, DNA_polA_I_Bacillus_like_exo, inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 649
KOG2206687 consensus Exosome 3'-5' exoribonuclease complex, s 100.0
PRK10829373 ribonuclease D; Provisional 100.0
COG0349361 Rnd Ribonuclease D [Translation, ribosomal structu 100.0
TIGR01388367 rnd ribonuclease D. This model describes ribonucle 100.0
cd06129161 RNaseD_like DEDDy 3'-5' exonuclease domain of RNas 99.9
cd06148197 Egl_like_exo DEDDy 3'-5' exonuclease domain of Dro 99.88
cd06146193 mut-7_like_exo DEDDy 3'-5' exonuclease domain of C 99.88
cd06141170 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and 99.87
PF01612176 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR00 99.8
cd06142178 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribon 99.71
cd06147192 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of y 99.56
smart00474172 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proo 99.56
PF0057068 HRDC: HRDC domain Bloom syndrome. Werner syndrome. 99.54
smart0034181 HRDC Helicase and RNase D C-terminal. Hypothetical 99.5
cd00007155 35EXOc 3'-5' exonuclease. The 35EXOc domain is res 99.45
cd09018150 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease 99.44
cd06140178 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' 99.38
PRK05755880 DNA polymerase I; Provisional 99.27
PRK14975553 bifunctional 3'-5' exonuclease/DNA polymerase; Pro 99.25
cd06139193 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease 99.03
KOG2207617 consensus Predicted 3'-5' exonuclease [Replication 98.89
TIGR01389591 recQ ATP-dependent DNA helicase RecQ. The ATP-depe 98.87
TIGR00593887 pola DNA polymerase I. This family is based on the 98.85
cd06128151 DNA_polA_exo DEDDy 3'-5' exonuclease domain of fam 98.65
COG0749593 PolA DNA polymerase I - 3'-5' exonuclease and poly 98.58
PRK11057607 ATP-dependent DNA helicase RecQ; Provisional 98.51
PLN031371195 ATP-dependent DNA helicase; Q4-like; Provisional 98.34
COG0514590 RecQ Superfamily II DNA helicase [DNA replication, 98.01
KOG4373319 consensus Predicted 3'-5' exonuclease [General fun 97.64
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 95.76
PF1140880 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR02 93.75
cd06143174 PAN2_exo DEDDh 3'-5' exonuclease domain of the euk 92.21
PRK06063313 DNA polymerase III subunit epsilon; Provisional 92.14
cd06137161 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the 91.33
cd06144152 REX4_like DEDDh 3'-5' exonuclease domain of RNA ex 90.75
PRK05711240 DNA polymerase III subunit epsilon; Provisional 90.69
TIGR01406225 dnaQ_proteo DNA polymerase III, epsilon subunit, P 90.63
cd06131167 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonucl 90.38
KOG2405458 consensus Predicted 3'-5' exonuclease [Replication 90.05
cd06145150 REX1_like DEDDh 3'-5' exonuclease domain of RNA ex 89.92
PRK07740244 hypothetical protein; Provisional 89.72
PRK07942232 DNA polymerase III subunit epsilon; Provisional 89.69
TIGR01298200 RNaseT ribonuclease T. in gamma-subdivision Proteo 89.32
PRK05168211 ribonuclease T; Provisional 88.53
PRK06310250 DNA polymerase III subunit epsilon; Validated 88.0
cd06127159 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh 87.61
PRK06807313 DNA polymerase III subunit epsilon; Validated 87.49
COG2176 1444 PolC DNA polymerase III, alpha subunit (gram-posit 87.49
cd0612596 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonucleas 87.42
PRK08517257 DNA polymerase III subunit epsilon; Provisional 87.19
cd06134189 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. 87.04
cd06149157 ISG20 DEDDh 3'-5' exonuclease domain of Interferon 86.94
smart00479169 EXOIII exonuclease domain in DNA-polymerase alpha 86.0
PRK07246 820 bifunctional ATP-dependent DNA helicase/DNA polyme 85.53
TIGR00573217 dnaq exonuclease, DNA polymerase III, epsilon subu 85.25
TIGR01405 1213 polC_Gram_pos DNA polymerase III, alpha chain, Gra 84.48
cd06130156 DNA_pol_III_epsilon_like an uncharacterized bacter 84.44
PRK06309232 DNA polymerase III subunit epsilon; Validated 81.41
PRK06195309 DNA polymerase III subunit epsilon; Validated 80.78
TIGR01407 850 dinG_rel DnaQ family exonuclease/DinG family helic 80.72
>KOG2206 consensus Exosome 3'-5' exoribonuclease complex, subunit PM/SCL-100 (Rrp6) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=1.7e-46  Score=409.15  Aligned_cols=248  Identities=50%  Similarity=0.836  Sum_probs=229.7

Q ss_pred             CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHH
Q 006352            1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH   80 (649)
Q Consensus         1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~   80 (649)
                      |||++++||||++.+..+++ .|.++|.||.|+||+|++..|+.||+++|||+++|+|||..|+++||.++++|++|++.
T Consensus       236 ISTr~ed~iIDt~~l~~~i~-~l~e~fsdp~ivkvfhgaD~diiwlqrdfgiyvvnLfdt~~a~r~L~~~r~sL~~ll~~  314 (687)
T KOG2206|consen  236 ISTRTEDFIIDTFKLRDHIG-ILNEVFSDPGIVKVFHGADTDIIWLQRDFGIYVVNLFDTIQASRLLGLPRPSLAYLLEC  314 (687)
T ss_pred             eeccchhheehhHHHHHHHH-HhhhhccCCCeEEEEecCccchhhhhccceEEEEechhhHHHHHHhCCCcccHHHHHHH
Confidence            89999999999999998885 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 006352           81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL  160 (649)
Q Consensus        81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~ke~~  160 (649)
                      |+|+..+|.+|+.||++|||+.+|+.||..|+|||+.||+.|+..|.+.+.   +. ..   .+.++++.|...|.++..
T Consensus       315 ~~~v~~nk~yqladwR~rpLp~~Mv~yar~dthyllyiyD~lr~el~~~a~---~~-~~---~~~~~~d~c~~~~~k~~~  387 (687)
T KOG2206|consen  315 VCGVLTNKKYQLADWRIRPLPEEMVRYAREDTHYLLYIYDVLRKELKRLAK---GR-AV---TYSESRDMCTNGYKKKTF  387 (687)
T ss_pred             HHhhhhhhhhhhchhccccCcHHHHHHHhhcchhHHHHHHHHHHHHHHHhc---cc-cc---ccchhhhhhhcceecccC
Confidence            999999999999999999999999999999999999999999988887652   11 11   233567889999988888


Q ss_pred             ChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhH
Q 006352          161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM  240 (649)
Q Consensus       161 ~e~~y~~i~g~~~~~L~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryG  240 (649)
                      ....|+.+..++. .++..|+.+|++|++||+.+||+.|++++|||+|+.|+.||..+|.+...|.++....+++++++.
T Consensus       388 ~~~sy~~v~~~q~-~ln~~q~~~l~~L~~wRd~iARaeDES~~yVlpN~~ll~l~e~~P~~v~gl~~~ln~~~p~vkq~~  466 (687)
T KOG2206|consen  388 CTKSYLEVEDIQS-RLNSSQLDVLRALLRWRDFIARAEDESVHYVLPNDQLLKLAEERPDTVDGLLGGLNRLSPLVKQNV  466 (687)
T ss_pred             CCcchHhHHHHHh-ccchhHHHHHHHHHHHHHHHHhhccCCCceecccHHHHHHHHHCCccHHHHHHhccCCCHHHHHHH
Confidence            8888999988754 499999999999999999999999999999999999999999999999999999888899999999


Q ss_pred             HHHHHHHHHHHhccccH
Q 006352          241 GPVLSIIKNSMQNAANF  257 (649)
Q Consensus       241 deIL~iI~~ale~~~~~  257 (649)
                      ..++.+|+.++.+...+
T Consensus       467 ~~~~~ii~~a~~~~l~~  483 (687)
T KOG2206|consen  467 MDFLYIIRSAGRGFLLQ  483 (687)
T ss_pred             HHHHHHHHHHhhhhhhh
Confidence            99999999999986544

>PRK10829 ribonuclease D; Provisional Back     alignment and domain information
>COG0349 Rnd Ribonuclease D [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01388 rnd ribonuclease D Back     alignment and domain information
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins Back     alignment and domain information
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins Back     alignment and domain information
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins Back     alignment and domain information
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides Back     alignment and domain information
>cd06142 RNaseD_exo DEDDy 3'-5' exonuclease domain of Ribonuclease D and similar proteins Back     alignment and domain information
>cd06147 Rrp6p_like_exo DEDDy 3'-5' exonuclease domain of yeast Rrp6p, human polymyositis/scleroderma autoantigen 100kDa, and similar proteins Back     alignment and domain information
>smart00474 35EXOc 3'-5' exonuclease Back     alignment and domain information
>PF00570 HRDC: HRDC domain Bloom syndrome Back     alignment and domain information
>smart00341 HRDC Helicase and RNase D C-terminal Back     alignment and domain information
>cd00007 35EXOc 3'-5' exonuclease Back     alignment and domain information
>cd09018 DEDDy_polA_RNaseD_like_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases, RNase D, WRN, and similar proteins Back     alignment and domain information
>cd06140 DNA_polA_I_Bacillus_like_exo inactive DEDDy 3'-5' exonuclease domain of Bacillus stearothermophilus DNA polymerase I and similar family-A DNA polymerases Back     alignment and domain information
>PRK05755 DNA polymerase I; Provisional Back     alignment and domain information
>PRK14975 bifunctional 3'-5' exonuclease/DNA polymerase; Provisional Back     alignment and domain information
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases Back     alignment and domain information
>KOG2207 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>TIGR01389 recQ ATP-dependent DNA helicase RecQ Back     alignment and domain information
>TIGR00593 pola DNA polymerase I Back     alignment and domain information
>cd06128 DNA_polA_exo DEDDy 3'-5' exonuclease domain of family-A DNA polymerases Back     alignment and domain information
>COG0749 PolA DNA polymerase I - 3'-5' exonuclease and polymerase domains [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional Back     alignment and domain information
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional Back     alignment and domain information
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG4373 consensus Predicted 3'-5' exonuclease [General function prediction only] Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>PF11408 Helicase_Sgs1: Sgs1 RecQ helicase; InterPro: IPR022758 RecQ helicases unwind DNA in an ATP-dependent manner Back     alignment and domain information
>cd06143 PAN2_exo DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonuclease PAN2 Back     alignment and domain information
>PRK06063 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins Back     alignment and domain information
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>PRK05711 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial Back     alignment and domain information
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins Back     alignment and domain information
>KOG2405 consensus Predicted 3'-5' exonuclease [Replication, recombination and repair] Back     alignment and domain information
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins Back     alignment and domain information
>PRK07740 hypothetical protein; Provisional Back     alignment and domain information
>PRK07942 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>TIGR01298 RNaseT ribonuclease T Back     alignment and domain information
>PRK05168 ribonuclease T; Provisional Back     alignment and domain information
>PRK06310 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family Back     alignment and domain information
>PRK06807 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair] Back     alignment and domain information
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily Back     alignment and domain information
>PRK08517 DNA polymerase III subunit epsilon; Provisional Back     alignment and domain information
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T Back     alignment and domain information
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins Back     alignment and domain information
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases Back     alignment and domain information
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family Back     alignment and domain information
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type Back     alignment and domain information
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III Back     alignment and domain information
>PRK06309 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>PRK06195 DNA polymerase III subunit epsilon; Validated Back     alignment and domain information
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
3saf_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 1e-61
3sah_A428 Crystal Structure Of The Human Rrp6 Catalytic Domai 2e-60
2hbj_A410 Structure Of The Yeast Nuclear Exosome Component, R 2e-38
3cym_A440 Crystal Structure Of Protein Bad_0989 From Bifidoba 3e-14
2cpr_A124 Solution Structure Of The Hrdc Domain Of Human Exos 2e-10
1yt3_A375 Crystal Structure Of Escherichia Coli Rnase D, An E 8e-07
>pdb|3SAF|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With D313n Mutation In The Active Site Length = 428 Back     alignment and structure 
Iteration: 1

 Score =  234 bits (596), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/219 (51%), Positives = 152/219 (69%), Gaps = 4/219 (1%)
Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S RTEDF++DTL+LR  +   L E   DP   KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 153 ISTRTEDFIIDTLELRSDMY-ILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 211
Query: 61  GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
            QA+R+L L R+SL++LL  +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 212 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 271
Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
            M+++   M +        L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQ
Sbjct: 272 KMRLE---MWERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 328
Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLP 219
           L     L  WRD  AR +DES GYVLPN  +++IA++LP
Sbjct: 329 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELP 367
>pdb|3SAH|A Chain A, Crystal Structure Of The Human Rrp6 Catalytic Domain With Y436a Mutation In The Catalytic Site Length = 428 Back     alignment and structure
>pdb|2HBJ|A Chain A, Structure Of The Yeast Nuclear Exosome Component, Rrp6p, Reveals An Interplay Between The Active Site And The Hrdc Domain Length = 410 Back     alignment and structure
>pdb|3CYM|A Chain A, Crystal Structure Of Protein Bad_0989 From Bifidobacterium Adolescentis Length = 440 Back     alignment and structure
>pdb|2CPR|A Chain A, Solution Structure Of The Hrdc Domain Of Human Exosome Component 10 Length = 124 Back     alignment and structure
>pdb|1YT3|A Chain A, Crystal Structure Of Escherichia Coli Rnase D, An Exoribonuclease Involved In Structured Rna Processing Length = 375 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query649
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 3e-89
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 3e-82
3cym_A440 Uncharacterized protein BAD_0989; structural genom 5e-67
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 1e-62
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 2e-25
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-13
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 7e-08
3pv8_A592 DNA polymerase I; DNA polymerase I, protein-DNA co 9e-04
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Length = 428 Back     alignment and structure
 Score =  283 bits (725), Expect = 3e-89
 Identities = 117/280 (41%), Positives = 173/280 (61%), Gaps = 4/280 (1%)

Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S RTEDF++DTL+LR  +   L E   DP   KV HGAD DI WLQ+DFG+Y+ NMFDT
Sbjct: 153 ISTRTEDFIIDTLELRSDMYI-LNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDT 211

Query: 61  GQASRVLKLERNSLEYLLHHFCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYD 120
            QA+R+L L R+SL++LL  +C V++NK+YQ ADWR+RPLP+EML YAR+DTHYLLYIYD
Sbjct: 212 HQAARLLNLGRHSLDHLLKLYCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYD 271

Query: 121 IMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELLSENSYLHIYGLQGAGLNAQQ 180
            M++++    +        L  V++RS D+C + + K + ++ SYL +Y  Q   LN QQ
Sbjct: 272 KMRLEMW---ERGNGQPVQLQVVWQRSRDICLKKFIKPIFTDESYLELYRKQKKHLNTQQ 328

Query: 181 LAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM 240
           L     L  WRD  AR +DES GYVLPN  +++IA++LP     +          + + +
Sbjct: 329 LTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQI 388

Query: 241 GPVLSIIKNSMQNAANFEVIAQKLKEERMEVASEETEVLV 280
             +  +I+ + +       +A  +K+     ++E  E ++
Sbjct: 389 NEMHLLIQQAREMPLLKSEVAAGVKKSGPLPSAERLENVL 428
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Length = 410 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Length = 440 Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Length = 375 Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Length = 208 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Length = 206 Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 3hp6_A* 2hhw_A* 3ez5_A* 2hvh_A* 2hvi_A* 3eyz_A* 1nk4_A* 1l3t_A* 1l3u_A* 1l3v_A* 1l5u_A* ... Length = 592 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
3saf_A428 Exosome component 10; exoribonuclease, RNA exosome 100.0
2hbj_A410 Exosome complex exonuclease RRP6; RNA metabolism, 100.0
1yt3_A375 Ribonuclease D, RNAse D; exoribonuclease, exonucle 100.0
3cym_A440 Uncharacterized protein BAD_0989; structural genom 100.0
1vk0_A206 Hypothetical protein; homohexamer, AT5G06450, stru 99.84
2e6m_A208 Werner syndrome ATP-dependent helicase homolog; AP 99.83
1wud_A89 ATP-dependent DNA helicase RECQ; DNA-binding domai 99.57
2rhf_A77 DNA helicase RECQ; HRDC, D. radiodurans, ATP-bindi 99.55
2kv2_A85 Bloom syndrome protein; HRDC domain, disease mutat 99.51
2rrd_A101 BLM HRDC domain, HRDC domain from bloom syndrome p 99.5
3pv8_A592 DNA polymerase I; DNA polymerase I, protein-DNA co 99.44
2e1f_A103 Werner syndrome ATP-dependent helicase; HRDC domai 99.43
2dgz_A113 Werner syndrome protein variant; HRDC domain, stru 99.42
2kfn_A605 Klenow fragment of DNA polymerase I; complex (poly 99.25
1x9m_A698 DNA polymerase; DNA ploymerase, N-2-acetylaminoflu 98.97
4dfk_A540 DNA polymerase I, thermostable; DNA polymerase, tr 98.53
1bgx_T832 TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhi 97.43
3v9w_A235 Ribonuclease T; DEDD nucleases family, EXO-nucleas 96.68
1d8b_A81 SGS1 RECQ helicase; five helices, three-helical bu 96.02
2f96_A224 Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolas 93.62
3mxm_B242 Three prime repair exonuclease 1; RNAse H-like fol 93.28
1y97_A238 Three prime repair exonuclease 2; TREX2, hydrolase 93.16
1wlj_A189 Interferon stimulated gene 20KDA; exoribonuclease, 92.36
2p1j_A186 POLIII, DNA polymerase III POLC-type; structural g 91.84
3u3y_B314 Three prime repair exonuclease 1; RNAse H fold, 3' 91.0
2gui_A194 DNA polymerase III epsilon subunit; DNA polymerase 89.7
1zbh_A299 3'-5' exonuclease ERI1; histone mRNA 3'-END-specif 80.64
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A Back     alignment and structure
Probab=100.00  E-value=2.1e-43  Score=382.77  Aligned_cols=259  Identities=44%  Similarity=0.758  Sum_probs=231.4

Q ss_pred             CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHH
Q 006352            1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH   80 (649)
Q Consensus         1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~   80 (649)
                      |||.+.+|+||++.+...+ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+|+|+++.+||+.|+++
T Consensus       153 La~~~~~~lidpl~l~~~l-~~L~~lL~dp~i~KV~H~~k~Dl~~L~~~~Gi~~~~~fDT~lAa~lL~~~~~gL~~Lv~~  231 (428)
T 3saf_A          153 ISTRTEDFIIDTLELRSDM-YILNESLTDPAIVKVFHGADSDIEWLQKDFGLYVVNMFDTHQAARLLNLGRHSLDHLLKL  231 (428)
T ss_dssp             EECSSCEEEEETTTTGGGG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHTTCSCCSHHHHHHH
T ss_pred             EEeCCcEEEEEeccchhhH-HHHHHHHcCCCceEEEeehHHHHHHHHHHcCCCcCceeechhHHHHhCCCCCCHHHHHHH
Confidence            5788899999999986455 469999999999999999999999998899999999999999999999988999999999


Q ss_pred             HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhhhcc
Q 006352           81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEKELL  160 (649)
Q Consensus        81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~ke~~  160 (649)
                      |||++++|+.+++||..|||+++|+.|||.||+||+.||+.|..+|.+.|+.   ...|+..++..+...|.+.|.++..
T Consensus       232 ~Lg~~l~K~~~~sdW~~rpLs~~q~~YAA~DA~~ll~L~~~L~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~  308 (428)
T 3saf_A          232 YCNVDSNKQYQLADWRIRPLPEEMLSYARDDTHYLLYIYDKMRLEMWERGNG---QPVQLQVVWQRSRDICLKKFIKPIF  308 (428)
T ss_dssp             HHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTS---CSHHHHHHHHHHHHHTTCCCCCCCC
T ss_pred             HcCCCCCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---cccHHHHHHHHHHHHHHHhhcCCCC
Confidence            9999999999999999999999999999999999999999999999987731   2358888888877777766655445


Q ss_pred             ChhHHHHHhcccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCccccChHHHHHHHHhCCCCHHHHHhhhcCChhHHHHhH
Q 006352          161 SENSYLHIYGLQGAGLNAQQLAVVAGLCEWRDVIARADDESTGYVLPNRTLIEIAKQLPTTAAKLRRLLKSKHSYIERYM  240 (649)
Q Consensus       161 ~e~~y~~i~g~~~~~L~~~qlaVL~aL~~WRe~iAR~~D~Pp~~VLsD~~LleIA~~~P~S~~eL~~i~g~~~~~vrryG  240 (649)
                      ....|..+++...+.++++|+++|++|+.||+++||++|+|+++||+|.+|++||+++|+|..+|.+|.|++...+++||
T Consensus       309 ~~~~~~~~~~~~~~~l~~~~l~l~~~L~~wR~~~Ar~~d~p~~~V~~d~~L~~iA~~~P~~~~~L~~i~g~~~~~~r~~g  388 (428)
T 3saf_A          309 TDESYLELYRKQKKHLNTQQLTAFQLLFAWRDKTARREDESYGYVLPNHMMLKIAEELPKEPQGIIACCNPVPPLVRQQI  388 (428)
T ss_dssp             CTTGGGHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHHTCCHHHHCCHHHHHHHHHHCCSSHHHHHTTCSSCCHHHHHTH
T ss_pred             CcccHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHcCCCcCEEECHHHHHHHHHHCCCCHHHHHhccCCCHHHHHHHH
Confidence            55667776543346899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhccccHHHHHHH
Q 006352          241 GPVLSIIKNSMQNAANFEVIAQK  263 (649)
Q Consensus       241 deIL~iI~~ale~~~~~e~~~~~  263 (649)
                      ++||++|+++.+.|-........
T Consensus       389 ~~~l~~I~~a~~~p~~~~~~~~~  411 (428)
T 3saf_A          389 NEMHLLIQQAREMPLLKSEVAAG  411 (428)
T ss_dssp             HHHHHHHHHHHTSCCCHHHHCC-
T ss_pred             HHHHHHHHHHHhCCCcCcchhhh
Confidence            99999999999988766665444
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A* Back     alignment and structure
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5 Back     alignment and structure
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID} Back     alignment and structure
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A Back     alignment and structure
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A* Back     alignment and structure
>1wud_A ATP-dependent DNA helicase RECQ; DNA-binding domain, HRDC, hydrolase; 2.20A {Escherichia coli} SCOP: a.60.8.1 Back     alignment and structure
>2rhf_A DNA helicase RECQ; HRDC, D. radiodurans, ATP-binding, hydrolase nucleotide-binding; HET: DNA; 1.10A {Deinococcus radiodurans} Back     alignment and structure
>2kv2_A Bloom syndrome protein; HRDC domain, disease mutation, DNA replicati binding, nucleotide-binding, nucleus, gene regulation; NMR {Homo sapiens} Back     alignment and structure
>2rrd_A BLM HRDC domain, HRDC domain from bloom syndrome protein; DNA helicase, RECQ family, HRDC DOMA binding protein; NMR {Homo sapiens} Back     alignment and structure
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ... Back     alignment and structure
>2e1f_A Werner syndrome ATP-dependent helicase; HRDC domain, hydrolase; 2.00A {Homo sapiens} SCOP: a.60.8.1 PDB: 2e1e_A Back     alignment and structure
>2dgz_A Werner syndrome protein variant; HRDC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.60.8.1 Back     alignment and structure
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A* Back     alignment and structure
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A* Back     alignment and structure
>4dfk_A DNA polymerase I, thermostable; DNA polymerase, transferase-DNA complex; HET: DNA DOC 0L5; 1.65A {Thermus aquaticus} PDB: 1jxe_A* 3ktq_A* 3lwl_A* 3lwm_A* 3m8s_A* 3m8r_A* 3oju_A* 3rr7_A* 3rr8_A* 3rrg_A* 3ojs_A* 3rtv_A* 3sv3_A* 3sv4_A* 3syz_A* 3sz2_A* 3t3f_A* 4df4_A* 4df8_A* 4dfj_A* ... Back     alignment and structure
>1bgx_T TAQ DNA polymerase; DNA polymerase, FAB, PCR, inhibition, helix-coil dynamics, inhibitor design, complex (polymerase/inhibitor); 2.30A {Thermus aquaticus} SCOP: a.60.7.1 c.120.1.2 c.55.3.5 e.8.1.1 PDB: 1cmw_A 1tau_A* 1taq_A* Back     alignment and structure
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A Back     alignment and structure
>1d8b_A SGS1 RECQ helicase; five helices, three-helical bundle flanked by two helices, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.8.1 Back     alignment and structure
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5 Back     alignment and structure
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A Back     alignment and structure
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5 Back     alignment and structure
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8} Back     alignment and structure
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B* Back     alignment and structure
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A* Back     alignment and structure
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 649
d1vk0a_206 c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thal 3e-25
d2cpra1113 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 6e-22
d2hbka2292 c.55.3.5 (A:129-420) Exosome complex exonuclease R 1e-20
d1yt3a3193 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domai 9e-17
d2hbka196 a.60.8.4 (A:421-516) Exosome complex exonuclease R 4e-15
d1yt3a1101 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia c 3e-12
d1kfsa1195 c.55.3.5 (A:324-518) Exonuclease domain of prokary 1e-10
d2hhva1171 c.55.3.5 (A:298-468) Exonuclease domain of prokary 3e-10
d1wuda177 a.60.8.1 (A:530-606) HRDC domain from RecQ helicas 5e-05
d2e1fa194 a.60.8.1 (A:1142-1235) Werner syndrome ATP-depende 7e-05
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 206 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Hypothetical protein AT5G06450
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  101 bits (253), Expect = 3e-25
 Identities = 22/128 (17%), Positives = 44/128 (34%), Gaps = 6/128 (4%)

Query: 1   MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDT 60
           +S R     +   K        L   F       V    + D+  L+ + G+ + N  + 
Sbjct: 78  LSTRNLCLFLRLPKPFHDNLKDLYRFFASKFVTFVGVQIEEDLDLLRENHGLVIRNAINV 137

Query: 61  GQASRVL----KLERNSLEYLLHHFCGVNANK-EYQNADWRVRPLPDEMLRYAREDTHYL 115
           G+ +        LE      L H     +  + +   A W  +  P+E L  A  +   +
Sbjct: 138 GKLAAEARGTLVLEFLGTRELAHRVLWSDLGQLDSIEAKWE-KAGPEEQLEAAAIEGWLI 196

Query: 116 LYIYDIMK 123
           + ++D + 
Sbjct: 197 VNVWDQLS 204
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Length = 113 Back     information, alignment and structure
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 292 Back     information, alignment and structure
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Length = 193 Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 96 Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Length = 101 Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Length = 195 Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Length = 171 Back     information, alignment and structure
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Length = 77 Back     information, alignment and structure
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Length = 94 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query649
d2hbka2292 Exosome complex exonuclease RRP6 {Baker's yeast (S 99.95
d1yt3a3193 Ribonuclease D, catalytic domain {Escherichia coli 99.92
d1vk0a_206 Hypothetical protein AT5G06450 {Thale-cress (Arabi 99.81
d2cpra1113 Exosome component 10, EXOSC10 {Human (Homo sapiens 99.74
d1yt3a1101 Ribonuclease D {Escherichia coli [TaxId: 562]} 99.73
d2hbka196 Exosome complex exonuclease RRP6 domain {Baker's y 99.7
d2hhva1171 Exonuclease domain of prokaryotic DNA polymerase { 99.6
d1kfsa1195 Exonuclease domain of prokaryotic DNA polymerase { 99.57
d1wuda177 HRDC domain from RecQ helicase {Escherichia coli [ 99.52
d2e1fa194 Werner syndrome ATP-dependent helicase, WRN {Human 99.41
d1wlja_173 Interferon-stimulated gene 20 kDa protein, ISG20 { 94.07
d1x9ma1204 Exonuclease domain of T7 DNA polymerase {Bacteriop 92.18
d3b6oa1226 Three prime repair exonuclease 1, TREX1 {Mouse (Mu 84.14
>d2hbka2 c.55.3.5 (A:129-420) Exosome complex exonuclease RRP6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: DnaQ-like 3'-5' exonuclease
domain: Exosome complex exonuclease RRP6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.6e-28  Score=252.19  Aligned_cols=148  Identities=47%  Similarity=0.771  Sum_probs=134.8

Q ss_pred             CCCCCceEEEeCCCcchhhhHHHHHhhcCCCceEEEEechhhHHHHHHHhCCCccccchHHHHHHHhCCCCCcHHHHHHH
Q 006352            1 MSLRTEDFVVDTLKLRVQVGPYLREVFKDPTKKKVMHGADRDIVWLQRDFGIYLCNMFDTGQASRVLKLERNSLEYLLHH   80 (649)
Q Consensus         1 IST~~~~yLID~Lal~~~L~~~Lk~lLeDp~I~KV~H~ak~DL~~L~rd~GI~p~nvFDTqIAA~LLg~~~~sLa~LVe~   80 (649)
                      |||++.+||||+++++.++ ..|+++|+|++|.||+|++++|+.+|++++|+.+.++|||++|+++|+..++||+.|+++
T Consensus       128 iat~~~~~iiD~~~l~~~l-~~L~~ll~d~~I~KV~H~~~~Di~~L~~~~g~~~~n~fDT~~aa~~l~~~~~sL~~L~~~  206 (292)
T d2hbka2         128 ISTRERDYLVDTLKLRENL-HILNEVFTNPSIVKVFHGAFMDIIWLQRDLGLYVVGLFDTYHASKAIGLPRHSLAYLLEN  206 (292)
T ss_dssp             EECSSCEEEEETTTTTTTG-GGGHHHHTCTTSEEEESSCHHHHHHHHHHHCCCCSSEEEHHHHHHHHTCSCCSHHHHHHH
T ss_pred             EEeCCccEEEEecccccch-HHHHHHHhccCeEEEeechHhhhhhhhhcccccccchHHHHHHHHHhCccccchHHHHHH
Confidence            6899999999999997666 469999999999999999999999999999999999999999999999888999999999


Q ss_pred             HcCCCCCcccccccCCCCCCCHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHHHHHHHHHhh
Q 006352           81 FCGVNANKEYQNADWRVRPLPDEMLRYAREDTHYLLYIYDIMKIKLSSMPKESENSDTPLTEVYKRSYDVCRQLYEK  157 (649)
Q Consensus        81 ~LGv~LdK~~q~SDW~~RPLS~eQl~YAA~DV~yLl~Lyd~L~~qL~e~gr~~e~~~~wL~Ev~k~s~e~~l~ly~k  157 (649)
                      |||++++|.+|++||+.|||+++|+.|||.||+||+.||+.|+.+|.+.++     ..|+   +..++.+|.+.|++
T Consensus       207 yl~~~ldK~~q~SdW~~RPLs~~qi~YAa~Da~~Ll~ly~~L~~~L~~~~~-----l~~v---~~e~~~~~~~~~e~  275 (292)
T d2hbka2         207 FANFKTSKKYQLADWRIRPLSKPMTAAARADTHFLLNIYDQLRNKLIESNK-----LAGV---LYESRNVAKRRFEY  275 (292)
T ss_dssp             HHCCCCCCTTTTSCTTCSSCCHHHHHHHHHHHHTHHHHHHHHHHHHHHTTC-----HHHH---HHHHHHHHHCEECC
T ss_pred             hhhhcccccccccccccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----HHHH---HHHHHHHHHHHhcc
Confidence            999999999999999999999999999999999999999999999998662     2444   45556778877654
>d1yt3a3 c.55.3.5 (A:1-193) Ribonuclease D, catalytic domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vk0a_ c.55.3.5 (A:) Hypothetical protein AT5G06450 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d2cpra1 a.60.8.4 (A:483-595) Exosome component 10, EXOSC10 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1yt3a1 a.60.8.3 (A:194-294) Ribonuclease D {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hbka1 a.60.8.4 (A:421-516) Exosome complex exonuclease RRP6 domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2hhva1 c.55.3.5 (A:298-468) Exonuclease domain of prokaryotic DNA polymerase {Bacillus stearothermophilus, newly identified strain as yet unnamed [TaxId: 1422]} Back     information, alignment and structure
>d1kfsa1 c.55.3.5 (A:324-518) Exonuclease domain of prokaryotic DNA polymerase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1wuda1 a.60.8.1 (A:530-606) HRDC domain from RecQ helicase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2e1fa1 a.60.8.1 (A:1142-1235) Werner syndrome ATP-dependent helicase, WRN {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wlja_ c.55.3.5 (A:) Interferon-stimulated gene 20 kDa protein, ISG20 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x9ma1 c.55.3.5 (A:1-210) Exonuclease domain of T7 DNA polymerase {Bacteriophage T7 [TaxId: 10760]} Back     information, alignment and structure
>d3b6oa1 c.55.3.5 (A:9-234) Three prime repair exonuclease 1, TREX1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure