Citrus Sinensis ID: 006396
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LMY5 | 826 | Putative pentatricopeptid | yes | no | 0.970 | 0.760 | 0.535 | 0.0 | |
| Q9FIX3 | 747 | Pentatricopeptide repeat- | no | no | 0.859 | 0.744 | 0.282 | 3e-77 | |
| Q9FJE6 | 907 | Putative pentatricopeptid | no | no | 0.941 | 0.671 | 0.283 | 6e-74 | |
| Q9SXD1 | 630 | Pentatricopeptide repeat- | no | no | 0.814 | 0.836 | 0.282 | 7e-72 | |
| Q9LVQ5 | 1096 | Pentatricopeptide repeat- | no | no | 0.992 | 0.585 | 0.269 | 2e-71 | |
| Q6NQ83 | 619 | Pentatricopeptide repeat- | no | no | 0.763 | 0.798 | 0.304 | 3e-71 | |
| Q9ASZ8 | 621 | Pentatricopeptide repeat- | no | no | 0.863 | 0.900 | 0.281 | 5e-71 | |
| Q9LFF1 | 754 | Pentatricopeptide repeat- | no | no | 0.749 | 0.643 | 0.301 | 6e-71 | |
| Q9CA58 | 763 | Putative pentatricopeptid | no | no | 0.948 | 0.804 | 0.263 | 8e-71 | |
| Q0WVK7 | 741 | Pentatricopeptide repeat- | no | no | 0.788 | 0.688 | 0.304 | 9e-71 |
| >sp|Q9LMY5|PPR41_ARATH Putative pentatricopeptide repeat-containing protein At1g13630 OS=Arabidopsis thaliana GN=At1g13630 PE=2 SV=3 | Back alignment and function desciption |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/670 (53%), Positives = 472/670 (70%), Gaps = 42/670 (6%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV D+++++ KMK+ +L VS Q+YNS+LY+ R TD MWD+Y +IK
Sbjct: 171 MLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIK----D 226
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 227 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSF 286
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+ILAKGFHL
Sbjct: 287 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHL 346
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VI 239
L ISGAW+VI+ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+LN +I
Sbjct: 347 LGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSII 406
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
SV+LS +CK+GRIDEAL L +M+A GL PDLV YSI+I GLCK K A+ LY+EM
Sbjct: 407 PCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM 466
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS HGA+LLGLC+K M+ EAR DSLI S D+VLYNI+IDGY K G I
Sbjct: 467 CDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCI 526
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ +IE I+PS+ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 527 EEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 586
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-------LQEAV---- 468
M+AY GN + + L +EM+ + I PT+VTY+V+ KGLC+ WK L+E +
Sbjct: 587 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 646
Query: 469 -QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
Q L DM G+ PDQITYNTII+ C+ K L AF L M NL+ +SATYNILID
Sbjct: 647 KQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDS 706
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LCV G ++ AD + SLQE N+SL+K AYTT+IKAHC +GD A+ F Q++ +GF +S
Sbjct: 707 LCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS 766
Query: 588 IRDY---------------TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632
IRDY +K FFC+MLS G PD +ICEVM+ + EL +
Sbjct: 767 IRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKS----------DELLS 816
Query: 633 VMIKSGLLPD 642
IK GLLPD
Sbjct: 817 WTIKWGLLPD 826
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 290 bits (742), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 176/623 (28%), Positives = 304/623 (48%), Gaps = 67/623 (10%)
Query: 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145
LQET + S V + ++ Y +L + A + L +G P SYN ++
Sbjct: 123 LQETYDLCYSTSSV-FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 146 AG-SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV 204
+ ++ A +M V P+ TY+IL +GF I A + K+ KG P++V
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 205 TYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264
TY LI GYC++ +++G KL M +G + N+I+Y+V+++ +C+ GR+ E +L EM
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Query: 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI 324
G D VTY+ LI+G CK+ H+A+ ++ EM ++P+ + +++ +C+ +
Sbjct: 302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 325 TEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384
A + D + + + Y ++DG+ + G + EA ++ R++ + SPS+VT+N+L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 385 IYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI 444
I G C GK+ DA +L+ +K GL P V+Y+T ++ +C ++ L + +EM K I
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504
P +TY+ +I+G C+Q + +EA L E+M +G+ PD+ TY +I ++C DL KA Q
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 505 LLNQMWLHNLEPTSATYNILIDGL------------------------------------ 528
L N+M + P TY++LI+GL
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCS 601
Query: 529 --------------CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574
C+ G + AD + S+ N AY +I HC GD+ KA T
Sbjct: 602 NIEFKSVVSLIKGFCMKGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYT 661
Query: 575 FFCQMVEKGF---EISIRDYTK------------SFFCMMLSNGFPPDQEICEVMLIAFH 619
+ +MV+ GF +++ K S +L + + E +V++ H
Sbjct: 662 LYKEMVKSGFLLHTVTVIALVKALHKEGKVNELNSVIVHVLRSCELSEAEQAKVLVEINH 721
Query: 620 QGGDLGSVFELAAVMIKSGLLPD 642
+ G++ V ++ A M K G LP+
Sbjct: 722 REGNMDVVLDVLAEMAKDGFLPN 744
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJE6|PP437_ARATH Putative pentatricopeptide repeat-containing protein At5g59900 OS=Arabidopsis thaliana GN=At5g59900 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 279 bits (713), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 180/636 (28%), Positives = 319/636 (50%), Gaps = 27/636 (4%)
Query: 12 VHDAVFVIAKMKELDLKVSIQTYNSLLYNL---RHTDIMWDLYDDIK-VSETPRNVYTNS 67
V +AV + + DLK + TY +L+Y L + +I ++ D++ + +P +S
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337
Query: 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127
+V +GL ++ ++++A+ ++ P++ NA++ CK A+ LF M K
Sbjct: 338 LV-EGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKI 396
Query: 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187
GL P+ +Y+ILI C G ++ AL F +M G++ Y+ L G IS A
Sbjct: 397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA 456
Query: 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS 247
+ +++ K +P +VTYT L+ GYC G + + L+L M +G ++ ++ LLS
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSG 516
Query: 248 MCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307
+ ++G I +A+ L EM +KP+ VTY+++I G C++ + KA + EM K I P+
Sbjct: 517 LFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Query: 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367
++++ ++ GLC +EA+++ D L NC + + Y ++ G+ + G + EA+ + +
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQ 636
Query: 368 QLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG 427
+++++ + +V + LI G K+ LL + GL+P V YT+ ++A + G
Sbjct: 637 EMVQRGVDLDLVCYGVLIDGSLKHKDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKSKTG 696
Query: 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487
+ + + M + P VTYT VI GLCK + EA L M + P+Q+TY
Sbjct: 697 DFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQVTYG 756
Query: 488 TIIRSFCKCK-DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546
+ K + D++KA +L N + L L +ATYN+LI G C G ++ A L+ +
Sbjct: 757 CFLDILTKGEVDMQKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRIEEASELITRMIG 815
Query: 547 HNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP 606
+S + YTT+I C DV KA+ + M EKG P
Sbjct: 816 DGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKGIR--------------------P 855
Query: 607 DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642
D+ ++ G++G EL M++ GL+P+
Sbjct: 856 DRVAYNTLIHGCCVAGEMGKATELRNEMLRQGLIPN 891
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670, mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 272 bits (695), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 151/534 (28%), Positives = 282/534 (52%), Gaps = 7/534 (1%)
Query: 7 SRTGM----VHDAVFVIAKMKELDLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSET 59
SR G+ + DAV + +M + SI ++ LL + D++ L + ++
Sbjct: 53 SRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI 112
Query: 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119
P N YT SI+I+ C++S+L A+ L + + P++V+L+++++ YC A
Sbjct: 113 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172
Query: 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179
L M G P+ ++N LIHGL + EA+ + M G +PD +TY ++ G
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 180 LLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI 239
A+ ++ K+ +P ++ Y +I G C+ ++++ L L + M ++G + NV+
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
YS L+S +C GR +A LL +M + PD+ T+S LI K+ K+ +A +LY+EM
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
+ I P+ + +++ G C + + EA+ F+ ++ +C DVV YN +I G+ K +
Sbjct: 353 VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 412
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
E ++++R++ ++ + + VT+N LI G + G A+ + + G+ P+ +TY T
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479
++ C+ G +++ + + + ++ + PT TY ++I+G+CK K+++ L ++ + GV
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD 533
PD + YNT+I FC+ +A L +M P S YN LI +GD
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD 586
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 270 bits (690), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 179/665 (26%), Positives = 317/665 (47%), Gaps = 23/665 (3%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHT--DI-MWDLYDDIKVS 57
+L VY R GM+ D++ + M S+ T N++L ++ + D+ +W ++
Sbjct: 128 ILIRVYLREGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSVWSFLKEMLKR 187
Query: 58 ETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVA 117
+ +V T +I+I+ LC + + + +Q+ + P++V+ N ++ YCK G + A
Sbjct: 188 KICPDVATFNILINVLCAEGSFEKSSYLMQKMEKSGYAPTIVTYNTVLHWYCKKGRFKAA 247
Query: 118 KGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKG 177
L M G+ D +YN+LIH LC + + + DM + + P+ +TY+ L G
Sbjct: 248 IELLDHMKSKGVDADVCTYNMLIHDLCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLING 307
Query: 178 FHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN 237
F ++ A +++ ++L G P+ VT+ LI G+ GN +E LK+ +M ++G +
Sbjct: 308 FSNEGKVLIASQLLNEMLSFGLSPNHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPS 367
Query: 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYN 297
++Y VLL +CK+ D A G M+ G+ +TY+ +I GLCK + +A+ L N
Sbjct: 368 EVSYGVLLDGLCKNAEFDLARGFYMRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVLLN 427
Query: 298 EMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG 357
EM I P+ + A++ G C+ A+ + + ++Y+ +I ++G
Sbjct: 428 EMSKDGIDPDIVTYSALINGFCKVGRFKTAKEIVCRIYRVGLSPNGIIYSTLIYNCCRMG 487
Query: 358 NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417
+ EA+++Y +I + + TFN L+ CK GKVA+A + + G+ P+ V++
Sbjct: 488 CLKEAIRIYEAMILEGHTRDHFTFNVLVTSLCKAGKVAEAEEFMRCMTSDGILPNTVSFD 547
Query: 418 TFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI 477
+N Y G + ++ EM PT TY ++KGLCK L+EA + L+ ++ +
Sbjct: 548 CLINGYGNSGEGLKAFSVFDEMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAV 607
Query: 478 GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537
D + YNT++ + CK +L KA L +M ++ P S TY LI GLC G K
Sbjct: 608 PAAVDTVMYNTLLTAMCKSGNLAKAVSLFGEMVQRSILPDSYTYTSLISGLCRKG--KTV 665
Query: 538 DCLLVSLQEH---NISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIR----- 589
+L + + N+ KV YT + G + F QM G I
Sbjct: 666 IAILFAKEAEARGNVLPNKVMYTCFVDGMFKAGQWKAGIYFREQMDNLGHTPDIVTTNAM 725
Query: 590 ----------DYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639
+ T M + P+ ++L + + D+ + F L +I +G+
Sbjct: 726 IDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRKDVSTSFLLYRSIILNGI 785
Query: 640 LPDKF 644
LPDK
Sbjct: 786 LPDKL 790
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 270 bits (689), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 154/506 (30%), Positives = 254/506 (50%)
Query: 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYN 137
++ DAI + P+ + N + S + ++ G M G+ D ++
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLGFCKGMELNGIEHDMYTMT 109
Query: 138 ILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197
I+I+ C + A + G EPD IT+S L GF L ++S A ++ +++
Sbjct: 110 IMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEM 169
Query: 198 GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEA 257
PD+VT + LI G C G V E L L + M+ GF+ + + Y +L+ +CKSG A
Sbjct: 170 KQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALA 229
Query: 258 LGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317
L L +ME +K +V YSI+I LCK A+ L+NEM K I + + +++ G
Sbjct: 230 LDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGG 289
Query: 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS 377
LC + +I N I DVV ++ +ID +VK G + EA +LY ++I + I+P
Sbjct: 290 LCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPD 349
Query: 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437
+T+NSLI GFCK + +A ++ D + G EP VTY+ +N+YC+ + + L +
Sbjct: 350 TITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFR 409
Query: 438 EMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK 497
E+ +K + P +TY ++ G C+ KL A +L ++M GV P +TY ++ C
Sbjct: 410 EISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNG 469
Query: 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYT 557
+L KA ++ +M + YNI+I G+C + +A L SL + + V Y
Sbjct: 470 ELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTYN 529
Query: 558 TIIKAHCAEGDVHKAMTFFCQMVEKG 583
+I C +G + +A F +M E G
Sbjct: 530 VMIGGLCKKGSLSEADMLFRKMKEDG 555
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (688), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 170/603 (28%), Positives = 286/603 (47%), Gaps = 44/603 (7%)
Query: 8 RTGMVH----DAVFVIAKMKELDLKVSIQTYN---SLLYNLRHTDIMWDLYDDIKVSETP 60
R+G+V DAV + +M + + ++ S++ + D++ DL +++
Sbjct: 45 RSGIVDIKEDDAVDLFQEMTRSRPRPRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIA 104
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
N+YT SI+I+ C+ +L L F+ + K
Sbjct: 105 HNLYTLSIMINCCCRCRKLS------------------------------LAFSAMGK-- 132
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
++K G PD +++ LI+GLC+ G + EALE + M G +P IT + L G L
Sbjct: 133 ---IIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
++S A +I +++ G P+ VTY ++ C+ G ++L M + KL+ +
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
YS+++ +CK G +D A L EME G K D++ Y+ LIRG C + +L +M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
++I+P+ A A++ ++ + EA +I D V Y +IDG+ K +
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
+A + ++ K P+I TFN LI G+CK + D L + L G+ VTY T +
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
+CE G ++ L QEM ++ + P V+Y +++ GLC + ++A+++ E + +
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
D YN II C + A+ L + L ++P TYNI+I GLC G L AD L
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLL 549
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600
++E S Y +I+AH EGD K+ ++ GF S+ T ML
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGF--SVDASTVKMVVDML 607
Query: 601 SNG 603
S+G
Sbjct: 608 SDG 610
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 269 bits (687), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 147/488 (30%), Positives = 262/488 (53%), Gaps = 3/488 (0%)
Query: 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLF 121
+V T +++I LC+ +L+ AIL L++ P + +M Y + G + A +
Sbjct: 188 DVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIR 247
Query: 122 CLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH-GVEPDAITYSILAKGFHL 180
M+++G S N+++HG C G +E+AL F +M G PD T++ L G
Sbjct: 248 EQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCK 307
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
+ A +++ +L +G DPD+ TY +I G C++G V+E +++ + M+++ N +
Sbjct: 308 AGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVT 367
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
Y+ L+S++CK +++EA L + + G+ PD+ T++ LI+GLC A++L+ EM
Sbjct: 368 YNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMR 427
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
SK P+ F + ++ LC K + EA + +S C + V+ YN +IDG+ K
Sbjct: 428 SKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTR 487
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EA +++ ++ +S + VT+N+LI G CK+ +V DA +L+D + + G +P TY + +
Sbjct: 488 EAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLL 547
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
+C G+I++ ++Q M + P VTY +I GLCK +++ A +LL + + G+
Sbjct: 548 THFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGIN 607
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA-TYNILIDGLCV-NGDLKNAD 538
YN +I+ + + +A L +M N P A +Y I+ GLC G ++ A
Sbjct: 608 LTPHAYNPVIQGLFRKRKTTEAINLFREMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAV 667
Query: 539 CLLVSLQE 546
LV L E
Sbjct: 668 DFLVELLE 675
|
May be involved in female gametophyte development. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (686), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 170/644 (26%), Positives = 312/644 (48%), Gaps = 30/644 (4%)
Query: 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYN---SLLYNLRHTDIMWDLYDDIKVSETPRN 62
Y R G V +AV V +M D + ++ +YN S+L + + D +Y ++ +
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFC 122
VY+ +I + C+ SR A+ L + + +VV+ ++ + + F LF
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 123 LMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLS 182
ML G+ ++N L+ LC G ++E + + + + GV P+ TY++ +G
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 183 QISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242
++ GA +++ L+ +G PD++TY LI G C+ +E M+++G + + Y+
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325
Query: 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302
L++ CK G + A ++ + G PD TY LI GLC + + ++A+ L+NE K
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 303 RISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEA 362
I PN + ++ GL + MI EA + + I +V +NI+++G K+G + +A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 363 VQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNA 422
L + +I K P I TFN LI+G+ K+ +A +LD + +G++P TY + +N
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD 482
C+ + ++ + M K P T+ ++++ LC+ KL EA+ LLE+M V PD
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 483 QITYNTIIRSFCKCKDLRKAFQLLNQMW-LHNLEPTSATYNILIDGLCVNGDLKNADCLL 541
+T+ T+I FCK DL A+ L +M + + ++ TYNI+I ++ A+ L
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLF 625
Query: 542 VSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLS 601
+ + + Y ++ C G+V+ F +M+E GF S+ + C+ +
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVE 685
Query: 602 NGFPPDQEICEVMLIAFHQGGDLGSVFELAAV---MIKSGLLPD 642
+ V+E A + M++ GL+P+
Sbjct: 686 D-----------------------RVYEAAGIIHRMVQKGLVPE 706
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 268 bits (685), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 161/528 (30%), Positives = 275/528 (52%), Gaps = 18/528 (3%)
Query: 10 GMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDD----IKVSETPR---- 61
G++ +A V KM L +S+ + N L L D Y I E P
Sbjct: 189 GLLREARRVFEKMLNYGLVLSVDSCNVYLTRLSK-----DCYKTATAIIVFREFPEVGVC 243
Query: 62 -NVYTNSIVIDGLCQQSRLQDA--ILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAK 118
NV + +IVI +CQ R+++A +L L E G + P V+S + +++ YC+ G +
Sbjct: 244 WNVASYNIVIHFVCQLGRIKEAHHLLLLMELKG--YTPDVISYSTVVNGYCRFGELDKVW 301
Query: 119 GLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGF 178
L +M + GL P+++ Y +I LC + EA E ++M R G+ PD + Y+ L GF
Sbjct: 302 KLIEVMKRKGLKPNSYIYGSIIGLLCRICKLAEAEEAFSEMIRQGILPDTVVYTTLIDGF 361
Query: 179 HLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV 238
I A K ++ + PD++TYT +I G+CQIG++ E KL M +G + +
Sbjct: 362 CKRGDIRAASKFFYEMHSRDITPDVLTYTAIISGFCQIGDMVEAGKLFHEMFCKGLEPDS 421
Query: 239 IAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNE 298
+ ++ L++ CK+G + +A + M G P++VTY+ LI GLCK+ + A +L +E
Sbjct: 422 VTFTELINGYCKAGHMKDAFRVHNHMIQAGCSPNVVTYTTLIDGLCKEGDLDSANELLHE 481
Query: 299 MCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358
M + PN F + +I+ GLC+ I EA + D V Y ++D Y K G
Sbjct: 482 MWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEAAGLNADTVTYTTLMDAYCKSGE 541
Query: 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT 418
+ +A ++ ++++ K + P+IVTFN L+ GFC +G + D +LL+ + G+ P+A T+ +
Sbjct: 542 MDKAQEILKEMLGKGLQPTIVTFNVLMNGFCLHGMLEDGEKLLNWMLAKGIAPNATTFNS 601
Query: 419 FMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG 478
+ YC N++ A+ ++M ++ +GP TY ++KG CK ++EA L ++M G
Sbjct: 602 LVKQYCIRNNLKAATAIYKDMCSRGVGPDGKTYENLVKGHCKARNMKEAWFLFQEMKGKG 661
Query: 479 VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526
+ TY+ +I+ F K K +A ++ +QM L ++ D
Sbjct: 662 FSVSVSTYSVLIKGFLKRKKFLEAREVFDQMRREGLAADKEIFDFFSD 709
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | ||||||
| 255547043 | 840 | pentatricopeptide repeat-containing prot | 0.989 | 0.761 | 0.687 | 0.0 | |
| 359473479 | 829 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.990 | 0.773 | 0.667 | 0.0 | |
| 224111844 | 745 | predicted protein [Populus trichocarpa] | 0.979 | 0.851 | 0.687 | 0.0 | |
| 297738205 | 821 | unnamed protein product [Vitis vinifera] | 0.978 | 0.771 | 0.661 | 0.0 | |
| 449453449 | 830 | PREDICTED: putative pentatricopeptide re | 0.987 | 0.769 | 0.584 | 0.0 | |
| 449527621 | 830 | PREDICTED: LOW QUALITY PROTEIN: putative | 0.987 | 0.769 | 0.583 | 0.0 | |
| 297849764 | 804 | predicted protein [Arabidopsis lyrata su | 0.972 | 0.782 | 0.529 | 0.0 | |
| 357529169 | 826 | RecName: Full=Putative pentatricopeptide | 0.970 | 0.760 | 0.535 | 0.0 | |
| 8920567 | 797 | Contains similarity to a hypothetical pr | 0.970 | 0.787 | 0.535 | 0.0 | |
| 334182559 | 798 | PPR repeat-containing protein [Arabidops | 0.908 | 0.736 | 0.553 | 0.0 |
| >gi|255547043|ref|XP_002514579.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223546183|gb|EEF47685.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 935 bits (2417), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 450/655 (68%), Positives = 537/655 (81%), Gaps = 15/655 (2%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
MLA YSR+ MVHDA+FV+ KMK+L+ VSIQTYNSLLYNLRH++IMWD+Y++IKVS TP
Sbjct: 184 MLACAYSRSAMVHDALFVLVKMKDLNFIVSIQTYNSLLYNLRHSNIMWDVYNEIKVSGTP 243
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
++ YT+SIV+DGLC+QSR QDA+LF Q+T GKEF PSVVS N IMSRYCKLGF +VAK
Sbjct: 244 QSEYTSSIVVDGLCRQSRFQDAVLFFQDTEGKEFQPSVVSFNTIMSRYCKLGFVDVAKSF 303
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC+MLK+GL PDA+SYNILIHGLCIAGSM EAL+ NDM HG+EPD +TY+ILAKGF L
Sbjct: 304 FCMMLKHGLLPDAYSYNILIHGLCIAGSMGEALDLKNDMENHGLEPDMVTYNILAKGFRL 363
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
L I+GAW +IQK+LIKG +P++VTYTVLICG+CQIGNVEE LKL + M+S GF+L++I+
Sbjct: 364 LGLINGAWNIIQKMLIKGPNPNLVTYTVLICGHCQIGNVEEALKLYKEMISHGFQLSIIS 423
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
+VLL S+CKS ++D A L EMEA GL+PDL+TYS LI GLCKQ +V +AI LY +MC
Sbjct: 424 STVLLGSLCKSRQVDVAFKLFCEMEANGLRPDLITYSTLIHGLCKQGEVQQAILLYEKMC 483
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
S RI PNS HGAIL+GLCEK I++ARMYFD LI SN D++LYNIMIDGY+K GN
Sbjct: 484 SNRIIPNSLIHGAILMGLCEKGKISQARMYFDYLITSNLSLDIILYNIMIDGYIKRGNTR 543
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EAV+LY+QL EK ISP+IVTFNSL+YGFC N K++ ARRLLDTIKLHGLEP+AVTYTT M
Sbjct: 544 EAVKLYKQLGEKGISPTIVTFNSLMYGFCINRKLSQARRLLDTIKLHGLEPNAVTYTTLM 603
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
N YCEEGN+Q LL LL EM+ KAIGPTH+TYTVVIKGLCKQWKLQE+ QLLEDM +G+T
Sbjct: 604 NVYCEEGNMQSLLELLSEMKAKAIGPTHITYTVVIKGLCKQWKLQESCQLLEDMDAVGLT 663
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
PDQ++YNTII++FCK +D+RKAFQL ++M LHNLEPTS TYNILI+G CV GDLK+AD L
Sbjct: 664 PDQVSYNTIIQAFCKARDMRKAFQLYDKMLLHNLEPTSVTYNILINGFCVYGDLKDADNL 723
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------- 592
LVSLQ ++L K AYTTIIKAHCA+GDV KA+ +F QMVEKGFE+SIRDY+
Sbjct: 724 LVSLQNRKVNLNKYAYTTIIKAHCAKGDVDKAVVYFRQMVEKGFEVSIRDYSAVIGRLCK 783
Query: 593 -------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640
K FFCMMLS+G PDQ++ EV+L AFHQ G L S FEL A MIKSG L
Sbjct: 784 RCLVTEAKYFFCMMLSDGVCPDQDLFEVLLNAFHQCGHLNSEFELLAEMIKSGWL 838
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359473479|ref|XP_002267299.2| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g13630-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 931 bits (2405), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 438/656 (66%), Positives = 541/656 (82%), Gaps = 15/656 (2%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
MLA YSR MVHDA+FV+AKMK L+L+VSI TYNSLLYNLRHTDIMWD+Y++IK S P
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVP 232
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N YTN I+IDGLC+QSRLQDA+ FL+ET G+EFGPSVVS NA+MS +CK+G +VAK
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSF 292
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC+M+KYGL PD +SYNIL+HGLC+AGSMEEALEFTNDM HGVEPD +TY+ILA GF +
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
L ISGAWKV+Q++L+ G +PD+VTYT+LICG+CQ+GN+EE KL+E MLSQG KL+++
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
Y+VLLSS+CKSGRIDEA+ LL+EME +GLKPDL+TYS+LI GLCK+ V +AI+LY EMC
Sbjct: 413 YTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYSVLIHGLCKRGAVEEAIELYEEMC 472
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
SKRI PNSF AI+ GL EK I+EA+MYFDS+ S+ ++++LYNIMIDGY KLGNIG
Sbjct: 473 SKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 532
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EAV+ Y+Q+IEK ISP+IVTFNSLIYGFCK GK+A+A +LLDTIK+HGL P++VTYTT M
Sbjct: 533 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 592
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
N YCEEG++ + +L EME KAI PT +TYTVV+KGLCK+ +L E+VQLL+ MY G+
Sbjct: 593 NGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLF 652
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
PDQITYNT+I+SFCK DL+KAFQL NQM H+L+P+ TYN+LI+GLCV G+LK+AD L
Sbjct: 653 PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRL 712
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------- 592
LV+LQ+ +I LTKVAYTTIIKAHCA+GDV A+ FF QMVE+GFE+SIRDY+
Sbjct: 713 LVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 772
Query: 593 -------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641
K FFCMML++G PPDQ+IC VML AFH+ GD SVFE+ A+MIK GLLP
Sbjct: 773 RNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 828
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224111844|ref|XP_002316000.1| predicted protein [Populus trichocarpa] gi|222865040|gb|EEF02171.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 922 bits (2384), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/650 (68%), Positives = 532/650 (81%), Gaps = 16/650 (2%)
Query: 9 TGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSI 68
+ MVHDA+FV+ KMKE +L+ SIQTYNSLLYNLRHTDIMWD+Y+DIK S TP++ T+SI
Sbjct: 96 SRMVHDALFVLVKMKEQNLRPSIQTYNSLLYNLRHTDIMWDVYNDIKDSGTPQSARTSSI 155
Query: 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128
++DGLC QSR +DA+LFL++ GKEF PSVVS N IMSRYCKLG A+VAK FC+MLKYG
Sbjct: 156 IVDGLCGQSRFRDAVLFLRQNDGKEFAPSVVSFNTIMSRYCKLGLADVAKSFFCMMLKYG 215
Query: 129 LHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAW 188
+ PD +SYNILIHGL +AGSMEEALE TNDM + G++PD +TY I+AKGFHLL +SGA
Sbjct: 216 ILPDTYSYNILIHGLIVAGSMEEALELTNDMEKQGLQPDMVTYKIVAKGFHLLGLMSGAR 275
Query: 189 KVIQKLLI-KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS 247
++IQK+L +G PD+VTYTVLICG+CQ+GN+EE L+LR +LS GF+LNVI YSVLLSS
Sbjct: 276 EIIQKMLTDEGLKPDLVTYTVLICGHCQMGNIEEALRLRRDLLSSGFQLNVILYSVLLSS 335
Query: 248 MCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307
+CK G++DEAL LLYEMEA L+PDLVTYSILI GLCKQ KV +AIQLY EMC RI PN
Sbjct: 336 LCKRGQVDEALQLLYEMEANNLQPDLVTYSILIHGLCKQGKVQQAIQLYKEMCFNRIFPN 395
Query: 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367
SFAH IL GLCEK M+++ARMYFDSLIMSN DV LYNIMIDGYVKLG++ EAV+LY+
Sbjct: 396 SFAHSGILKGLCEKGMLSDARMYFDSLIMSNLRPDVTLYNIMIDGYVKLGDVEEAVRLYK 455
Query: 368 QLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG 427
+L +K I+PSIVTFNSLIYGFCKN KV +ARRLL++IKLHGLEPSAVTYTT MNAYCEEG
Sbjct: 456 RLRDKAITPSIVTFNSLIYGFCKNRKVVEARRLLESIKLHGLEPSAVTYTTLMNAYCEEG 515
Query: 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487
NI +L LL EM K I PT VTYTVVIKGLCKQ KL+E+VQLLEDM G+ PDQITYN
Sbjct: 516 NINKLHELLLEMNLKDIEPTVVTYTVVIKGLCKQRKLEESVQLLEDMRAKGLAPDQITYN 575
Query: 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547
TII+ FCK KD+RKAF+LL+ M +HNLEPT ATYN+LIDGLC GD+++AD +LVSLQ+
Sbjct: 576 TIIQCFCKAKDMRKAFELLDDMLIHNLEPTPATYNVLIDGLCRYGDVEDADRVLVSLQDR 635
Query: 548 NISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT--------------- 592
NI+LTKVAYTT+IKAHC +GD +A+ F QMVEKGFE+SI+DY+
Sbjct: 636 NINLTKVAYTTMIKAHCVKGDAQRAVKVFHQMVEKGFEVSIKDYSAVINRLCKRCLINEA 695
Query: 593 KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642
K +FC+MLS+G PDQEI E+ML AFH+ G + SVFEL AVMIK GLL D
Sbjct: 696 KYYFCIMLSDGVSPDQEIFEMMLNAFHRAGHVHSVFELLAVMIKFGLLHD 745
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297738205|emb|CBI27406.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 911 bits (2355), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 434/656 (66%), Positives = 535/656 (81%), Gaps = 23/656 (3%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
MLA YSR MVHDA+FV+AKMK L+L+VSI TYNSLLYNLRHTDIMWD+Y++IK S P
Sbjct: 173 MLACAYSRAEMVHDALFVLAKMKVLNLQVSIATYNSLLYNLRHTDIMWDVYNEIKASGVP 232
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N YTN I+IDGLC+QSRLQDA+ FL+ET G+EFGPSVVS NA+MS +CK+G +VAK
Sbjct: 233 QNEYTNPILIDGLCRQSRLQDAVTFLRETGGEEFGPSVVSFNALMSGFCKMGSVDVAKSF 292
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC+M+KYGL PD +SYNIL+HGLC+AGSMEEALEFTNDM HGVEPD +TY+ILA GF +
Sbjct: 293 FCMMIKYGLLPDVYSYNILLHGLCVAGSMEEALEFTNDMENHGVEPDIVTYNILANGFRI 352
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
L ISGAWKV+Q++L+ G +PD+VTYT+LICG+CQ+GN+EE KL+E MLSQG KL+++
Sbjct: 353 LGLISGAWKVVQRMLLNGLNPDLVTYTILICGHCQMGNIEESFKLKEKMLSQGLKLSIVT 412
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
Y+VLLSS+CKSGRIDEA+ LL+EME +GLKPDL+TYS RG V +AI+LY EMC
Sbjct: 413 YTVLLSSLCKSGRIDEAVILLHEMEVIGLKPDLLTYS---RG-----AVEEAIELYEEMC 464
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
SKRI PNSF AI+ GL EK I+EA+MYFDS+ S+ ++++LYNIMIDGY KLGNIG
Sbjct: 465 SKRIYPNSFVCSAIISGLFEKGAISEAQMYFDSVTKSDVAEEIILYNIMIDGYAKLGNIG 524
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EAV+ Y+Q+IEK ISP+IVTFNSLIYGFCK GK+A+A +LLDTIK+HGL P++VTYTT M
Sbjct: 525 EAVRSYKQIIEKGISPTIVTFNSLIYGFCKKGKLAEAVKLLDTIKVHGLVPTSVTYTTLM 584
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
N YCEEG++ + +L EME KAI PT +TYTVV+KGLCK+ +L E+VQLL+ MY G+
Sbjct: 585 NGYCEEGDMHSMFDMLHEMEAKAIKPTQITYTVVVKGLCKEGRLHESVQLLKYMYARGLF 644
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
PDQITYNT+I+SFCK DL+KAFQL NQM H+L+P+ TYN+LI+GLCV G+LK+AD L
Sbjct: 645 PDQITYNTVIQSFCKAHDLQKAFQLHNQMLQHSLQPSPVTYNVLINGLCVYGNLKDADRL 704
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------- 592
LV+LQ+ +I LTKVAYTTIIKAHCA+GDV A+ FF QMVE+GFE+SIRDY+
Sbjct: 705 LVTLQDQSIRLTKVAYTTIIKAHCAKGDVQNALVFFHQMVERGFEVSIRDYSAVINRLCK 764
Query: 593 -------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641
K FFCMML++G PPDQ+IC VML AFH+ GD SVFE+ A+MIK GLLP
Sbjct: 765 RNLITDAKFFFCMMLTHGIPPDQDICLVMLNAFHRSGDPNSVFEIFAMMIKCGLLP 820
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449453449|ref|XP_004144470.1| PREDICTED: putative pentatricopeptide repeat-containing protein At1g13630-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2056), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/655 (58%), Positives = 499/655 (76%), Gaps = 16/655 (2%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
MLAF YSR M+HDA+FVIAKMK+L+ + S+ TYNSLL+N+RHTDIMWD+Y++IKVS P
Sbjct: 175 MLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGAP 234
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
++ T SI+I GLC+QS+L+DAI FL ++ K GPS+VS+N IMS++CK+G +VA+
Sbjct: 235 QSECTTSILIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSF 293
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FCLM+K GL D+FSYNIL+HGLC+AGSM+EAL FT+DM +HGVEPD +TY+ LAKGF L
Sbjct: 294 FCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLL 353
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
L +SGA KV+QK+L++G +PD+VTYT LICG+CQ+GN+EE LKLR+ LS+GFKLNVI
Sbjct: 354 LGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIF 413
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
Y++LLS +CK GRI+EAL L EME + L+PD + YSILI GLCK+ V +A QLY +M
Sbjct: 414 YNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMR 473
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
KR P+ FA A+LLGL + I+EAR YFD+ + ++DVVLYNIMIDGYV+L I
Sbjct: 474 LKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIA 533
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EA+QLY ++IE+ I+PS+VTFN+LI GFC+ G + +AR++L+ I+L GL PS VTYTT M
Sbjct: 534 EAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
NAYCE GN+Q + L EME A+ PTHVTYTV+IKGLC+Q K+ E++QLLE MY G+
Sbjct: 594 NAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLL 653
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
PD +TYNTII+ FCK K++ KA QL N M LHN +PT TY +LI+ LC+ GDLK+ D +
Sbjct: 654 PDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRM 713
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------- 592
+VS+++ NI+L KV Y TIIKAHCA+G V KA+ +F QM+ KGF ISIRDY+
Sbjct: 714 VVSIEDRNITLKKVTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCK 773
Query: 593 -------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640
K FF MMLS G PD EIC+ +L AFHQ G+ SVFE A+++KSG +
Sbjct: 774 RGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGFI 828
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449527621|ref|XP_004170808.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g13630-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 793 bits (2049), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 382/655 (58%), Positives = 498/655 (76%), Gaps = 16/655 (2%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
MLAF YSR M+HDA+FVIAKMK+L+ + S+ TYNSLL+N+RHTDIMWD+Y++IKVS P
Sbjct: 175 MLAFAYSRHEMIHDALFVIAKMKDLNFQASVPTYNSLLHNMRHTDIMWDVYNEIKVSGAP 234
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
++ T SI+I GLC+QS+L+DAI FL ++ K GPS+VS+N IMS++CK+G +VA+
Sbjct: 235 QSECTTSILIHGLCEQSKLEDAISFLHDS-NKVVGPSIVSINTIMSKFCKVGLIDVARSX 293
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FCLM+K GL D+FSYNIL+HGLC+AGSM+EAL FT+DM +HGVEPD +TY+ LAKGF L
Sbjct: 294 FCLMVKNGLLHDSFSYNILLHGLCVAGSMDEALGFTDDMEKHGVEPDVVTYNTLAKGFLL 353
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
L +SGA KV+QK+L++G +PD+VTYT LICG+CQ+GN+EE LKLR+ LS+GFKLNVI
Sbjct: 354 LGLMSGARKVVQKMLLQGLNPDLVTYTTLICGHCQMGNIEEALKLRQETLSRGFKLNVIF 413
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
Y++LLS +CK GRI+EAL L EME + L+PD + YSILI GLCK+ V +A QLY +M
Sbjct: 414 YNMLLSCLCKVGRIEEALTLFDEMETLRLEPDFIVYSILIHGLCKEGFVQRAYQLYEQMR 473
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
KR P+ FA A+LLGL + I+EAR YFD+ + ++DVVLYNIMIDGYV+L I
Sbjct: 474 LKRKFPHHFAQRAVLLGLFKNGNISEARNYFDTWTRMDLMEDVVLYNIMIDGYVRLDGIA 533
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
EA+QLY ++IE+ I+PS+VTFN+LI GFC+ G + +AR++L+ I+L GL PS VTYTT M
Sbjct: 534 EAMQLYYKMIERGITPSVVTFNTLINGFCRRGDLMEARKMLEVIRLKGLVPSVVTYTTLM 593
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
NAYCE GN+Q + L EME A+ PTHVTYTV+IKGLC+Q K+ E++QLLE MY G+
Sbjct: 594 NAYCEVGNMQEMFHFLHEMEANAVVPTHVTYTVLIKGLCRQNKMHESLQLLEYMYAKGLL 653
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
PD +TYNTII+ FCK K++ KA QL N M LHN +PT TY +LI+ LC+ GDLK+ D +
Sbjct: 654 PDSVTYNTIIQCFCKGKEITKALQLYNMMLLHNCDPTQVTYKVLINALCIFGDLKDVDRM 713
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------- 592
+VS+++ NI+L K Y TIIKAHCA+G V KA+ +F QM+ KGF ISIRDY+
Sbjct: 714 VVSIEDRNITLKKXTYMTIIKAHCAKGQVSKALGYFNQMLAKGFVISIRDYSAVINRLCK 773
Query: 593 -------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640
K FF MMLS G PD EIC+ +L AFHQ G+ SVFE A+++KSG +
Sbjct: 774 RGLITEAKYFFVMMLSEGVTPDPEICKTVLNAFHQQGNNSSVFEFLAMVVKSGFI 828
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297849764|ref|XP_002892763.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297338605|gb|EFH69022.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 355/671 (52%), Positives = 478/671 (71%), Gaps = 42/671 (6%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV ++++++ KMK+ +L VS Q+YNS+LYN R TD MWD+Y +IK
Sbjct: 148 MLLFLSSRLRMVDESLYILKKMKDRNLNVSTQSYNSVLYNFRETDKMWDVYKEIK----D 203
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 204 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSSYCKLGFVDMAKSF 263
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+IL KGFHL
Sbjct: 264 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILVKGFHL 323
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL-NVI 239
L ISGA +VIQ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+L ++I
Sbjct: 324 LGMISGAGEVIQDMLDKGLSPDVITYTILLCGQCQLGNIDMGLILLKDMLSRGFELKSII 383
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
YSV+LS +CK+GR+DEAL L Y++EA GL PDLV YSI+I GLCK K A+++Y+EM
Sbjct: 384 PYSVMLSGLCKTGRVDEALSLFYDLEAYGLTPDLVAYSIVIHGLCKLGKFDMAVRVYDEM 443
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS GAI+LGLC+K M+ EAR DSLI S D++LYNI+IDGY K G I
Sbjct: 444 CYKRILPNSRTLGAIMLGLCQKGMLLEARSLLDSLISSGDTLDIILYNIVIDGYAKSGCI 503
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ IE I+P++ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 504 EEALELFKVAIESGITPNVATFNSLIYGYCKTQNIAEARKILDVIKLYGLVPSVVSYTTL 563
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ---------- 469
M+AY G+I+ + L +EM+ + I PT+VTY+V+ KGLC+ WKL+ Q
Sbjct: 564 MDAYANCGSIKSIEELRREMKAEGIPPTNVTYSVIFKGLCRGWKLENCNQVLRERILEKF 623
Query: 470 --LLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
+L DM G+TPDQITYNTII+ C+ K L +AF+L +M NL+PTSATYNILID
Sbjct: 624 NHVLRDMESEGITPDQITYNTIIQYLCRVKHLSRAFELFKKMKSQNLDPTSATYNILIDS 683
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LC+ G ++ AD L SLQ+ N+SL+K AYTT+IKAHC +GD A+ F Q++++GF +S
Sbjct: 684 LCIYGCIRKADRFLYSLQKRNVSLSKFAYTTVIKAHCVKGDPEMAVILFNQLLDRGFNVS 743
Query: 588 IRDY---------------TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632
IRDY +K FFC+MLS G PD +ICEVM+ + EL +
Sbjct: 744 IRDYSAVINRLCRRHLAIESKYFFCLMLSRGISPDLDICEVMIKS----------DELLS 793
Query: 633 VMIKSGLLPDK 643
IK GLLPD+
Sbjct: 794 WTIKWGLLPDQ 804
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357529169|sp|Q9LMY5.3|PPR41_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein At1g13630 | Back alignment and taxonomy information |
|---|
Score = 709 bits (1831), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/670 (53%), Positives = 472/670 (70%), Gaps = 42/670 (6%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV D+++++ KMK+ +L VS Q+YNS+LY+ R TD MWD+Y +IK
Sbjct: 171 MLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIK----D 226
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 227 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSF 286
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+ILAKGFHL
Sbjct: 287 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHL 346
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VI 239
L ISGAW+VI+ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+LN +I
Sbjct: 347 LGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSII 406
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
SV+LS +CK+GRIDEAL L +M+A GL PDLV YSI+I GLCK K A+ LY+EM
Sbjct: 407 PCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM 466
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS HGA+LLGLC+K M+ EAR DSLI S D+VLYNI+IDGY K G I
Sbjct: 467 CDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCI 526
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ +IE I+PS+ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 527 EEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 586
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-------LQEAV---- 468
M+AY GN + + L +EM+ + I PT+VTY+V+ KGLC+ WK L+E +
Sbjct: 587 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 646
Query: 469 -QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
Q L DM G+ PDQITYNTII+ C+ K L AF L M NL+ +SATYNILID
Sbjct: 647 KQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDS 706
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LCV G ++ AD + SLQE N+SL+K AYTT+IKAHC +GD A+ F Q++ +GF +S
Sbjct: 707 LCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS 766
Query: 588 IRDY---------------TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632
IRDY +K FFC+MLS G PD +ICEVM+ + EL +
Sbjct: 767 IRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKS----------DELLS 816
Query: 633 VMIKSGLLPD 642
IK GLLPD
Sbjct: 817 WTIKWGLLPD 826
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|8920567|gb|AAF81289.1|AC027656_6 Contains similarity to a hypothetical protein F23N19.4 gi|6630464 from Arabidopsis thaliana BAC F23N19 gb|AC007190. It contains a PPR repeat domain PF|01535 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 709 bits (1829), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/670 (53%), Positives = 472/670 (70%), Gaps = 42/670 (6%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV D+++++ KMK+ +L VS Q+YNS+LY+ R TD MWD+Y +IK
Sbjct: 142 MLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIK----D 197
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 198 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSF 257
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+ILAKGFHL
Sbjct: 258 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHL 317
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VI 239
L ISGAW+VI+ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+LN +I
Sbjct: 318 LGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSII 377
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
SV+LS +CK+GRIDEAL L +M+A GL PDLV YSI+I GLCK K A+ LY+EM
Sbjct: 378 PCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM 437
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS HGA+LLGLC+K M+ EAR DSLI S D+VLYNI+IDGY K G I
Sbjct: 438 CDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCI 497
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ +IE I+PS+ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 498 EEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 557
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-------LQEAV---- 468
M+AY GN + + L +EM+ + I PT+VTY+V+ KGLC+ WK L+E +
Sbjct: 558 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 617
Query: 469 -QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
Q L DM G+ PDQITYNTII+ C+ K L AF L M NL+ +SATYNILID
Sbjct: 618 KQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDS 677
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LCV G ++ AD + SLQE N+SL+K AYTT+IKAHC +GD A+ F Q++ +GF +S
Sbjct: 678 LCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS 737
Query: 588 IRDY---------------TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632
IRDY +K FFC+MLS G PD +ICEVM+ + EL +
Sbjct: 738 IRDYSAVINRLCRRHLVNESKFFFCLMLSQGISPDLDICEVMIKS----------DELLS 787
Query: 633 VMIKSGLLPD 642
IK GLLPD
Sbjct: 788 WTIKWGLLPD 797
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334182559|ref|NP_001184987.1| PPR repeat-containing protein [Arabidopsis thaliana] gi|332190929|gb|AEE29050.1| PPR repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 679 bits (1752), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 335/605 (55%), Positives = 443/605 (73%), Gaps = 17/605 (2%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV D+++++ KMK+ +L VS Q+YNS+LY+ R TD MWD+Y +IK
Sbjct: 129 MLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIK----D 184
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 185 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSF 244
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+ILAKGFHL
Sbjct: 245 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHL 304
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VI 239
L ISGAW+VI+ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+LN +I
Sbjct: 305 LGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSII 364
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
SV+LS +CK+GRIDEAL L +M+A GL PDLV YSI+I GLCK K A+ LY+EM
Sbjct: 365 PCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM 424
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS HGA+LLGLC+K M+ EAR DSLI S D+VLYNI+IDGY K G I
Sbjct: 425 CDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCI 484
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ +IE I+PS+ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 485 EEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 544
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-------LQEAV---- 468
M+AY GN + + L +EM+ + I PT+VTY+V+ KGLC+ WK L+E +
Sbjct: 545 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 604
Query: 469 -QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
Q L DM G+ PDQITYNTII+ C+ K L AF L M NL+ +SATYNILID
Sbjct: 605 KQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDS 664
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LCV G ++ AD + SLQE N+SL+K AYTT+IKAHC +GD A+ F Q++ +GF +S
Sbjct: 665 LCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS 724
Query: 588 IRDYT 592
IRDY+
Sbjct: 725 IRDYS 729
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 647 | ||||||
| TAIR|locus:2009997 | 826 | AT1G13630 "AT1G13630" [Arabido | 0.908 | 0.711 | 0.553 | 1.9e-177 | |
| TAIR|locus:2164910 | 747 | EMB2745 "EMBRYO DEFECTIVE 2745 | 0.846 | 0.733 | 0.303 | 4e-74 | |
| TAIR|locus:2168078 | 907 | AT5G59900 "AT5G59900" [Arabido | 0.876 | 0.625 | 0.294 | 4.3e-70 | |
| TAIR|locus:2083976 | 754 | MEE40 "maternal effect embryo | 0.921 | 0.790 | 0.280 | 4.3e-70 | |
| TAIR|locus:2150024 | 729 | AT5G01110 [Arabidopsis thalian | 0.769 | 0.683 | 0.306 | 2e-69 | |
| TAIR|locus:2019085 | 763 | AT1G74580 "AT1G74580" [Arabido | 0.922 | 0.782 | 0.271 | 2.1e-68 | |
| TAIR|locus:2026192 | 630 | RPF2 "rna processing factor 2" | 0.826 | 0.849 | 0.281 | 2.7e-68 | |
| TAIR|locus:2155730 | 915 | AT5G65560 "AT5G65560" [Arabido | 0.757 | 0.535 | 0.313 | 4.4e-68 | |
| TAIR|locus:2195047 | 621 | AT1G12620 [Arabidopsis thalian | 0.913 | 0.951 | 0.280 | 1.2e-67 | |
| TAIR|locus:2077061 | 619 | AT3G22470 "AT3G22470" [Arabido | 0.780 | 0.815 | 0.305 | 1.5e-67 |
| TAIR|locus:2009997 AT1G13630 "AT1G13630" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1723 (611.6 bits), Expect = 1.9e-177, P = 1.9e-177
Identities = 335/605 (55%), Positives = 443/605 (73%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETP 60
ML F+ SR MV D+++++ KMK+ +L VS Q+YNS+LY+ R TD MWD+Y +IK
Sbjct: 171 MLLFLSSRLRMVDDSLYILKKMKDQNLNVSTQSYNSVLYHFRETDKMWDVYKEIK----D 226
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+N +T S V+DGLC+Q +L+DA+LFL+ + K+ GPSVVS N+IMS YCKLGF ++AK
Sbjct: 227 KNEHTYSTVVDGLCRQQKLEDAVLFLRTSEWKDIGPSVVSFNSIMSGYCKLGFVDMAKSF 286
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
FC +LK GL P +S+NILI+GLC+ GS+ EALE +DM +HGVEPD++TY+ILAKGFHL
Sbjct: 287 FCTVLKCGLVPSVYSHNILINGLCLVGSIAEALELASDMNKHGVEPDSVTYNILAKGFHL 346
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VI 239
L ISGAW+VI+ +L KG PD++TYT+L+CG CQ+GN++ GL L + MLS+GF+LN +I
Sbjct: 347 LGMISGAWEVIRDMLDKGLSPDVITYTILLCGQCQLGNIDMGLVLLKDMLSRGFELNSII 406
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
SV+LS +CK+GRIDEAL L +M+A GL PDLV YSI+I GLCK K A+ LY+EM
Sbjct: 407 PCSVMLSGLCKTGRIDEALSLFNQMKADGLSPDLVAYSIVIHGLCKLGKFDMALWLYDEM 466
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
C KRI PNS HGA+LLGLC+K M+ EAR DSLI S D+VLYNI+IDGY K G I
Sbjct: 467 CDKRILPNSRTHGALLLGLCQKGMLLEARSLLDSLISSGETLDIVLYNIVIDGYAKSGCI 526
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
EA++L++ +IE I+PS+ TFNSLIYG+CK +A+AR++LD IKL+GL PS V+YTT
Sbjct: 527 EEALELFKVVIETGITPSVATFNSLIYGYCKTQNIAEARKILDVIKLYGLAPSVVSYTTL 586
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-------LQEAV---- 468
M+AY GN + + L +EM+ + I PT+VTY+V+ KGLC+ WK L+E +
Sbjct: 587 MDAYANCGNTKSIDELRREMKAEGIPPTNVTYSVIFKGLCRGWKHENCNHVLRERIFEKC 646
Query: 469 -QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
Q L DM G+ PDQITYNTII+ C+ K L AF L M NL+ +SATYNILID
Sbjct: 647 KQGLRDMESEGIPPDQITYNTIIQYLCRVKHLSGAFVFLEIMKSRNLDASSATYNILIDS 706
Query: 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEIS 587
LCV G ++ AD + SLQE N+SL+K AYTT+IKAHC +GD A+ F Q++ +GF +S
Sbjct: 707 LCVYGYIRKADSFIYSLQEQNVSLSKFAYTTLIKAHCVKGDPEMAVKLFHQLLHRGFNVS 766
Query: 588 IRDYT 592
IRDY+
Sbjct: 767 IRDYS 771
|
|
| TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 4.0e-74, P = 4.0e-74
Identities = 169/557 (30%), Positives = 293/557 (52%)
Query: 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145
LQET + S V + ++ Y +L + A + L +G P SYN ++
Sbjct: 123 LQETYDLCYSTSSV-FDLVVKSYSRLSLIDKALSIVHLAQAHGFMPGVLSYNAVLDATIR 181
Query: 146 AG-SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV 204
+ ++ A +M V P+ TY+IL +GF I A + K+ KG P++V
Sbjct: 182 SKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVV 241
Query: 205 TYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264
TY LI GYC++ +++G KL M +G + N+I+Y+V+++ +C+ GR+ E +L EM
Sbjct: 242 TYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEM 301
Query: 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI 324
G D VTY+ LI+G CK+ H+A+ ++ EM ++P+ + +++ +C+ +
Sbjct: 302 NRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNM 361
Query: 325 TEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384
A + D + + + Y ++DG+ + G + EA ++ R++ + SPS+VT+N+L
Sbjct: 362 NRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNAL 421
Query: 385 IYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI 444
I G C GK+ DA +L+ +K GL P V+Y+T ++ +C ++ L + +EM K I
Sbjct: 422 INGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGI 481
Query: 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504
P +TY+ +I+G C+Q + +EA L E+M +G+ PD+ TY +I ++C DL KA Q
Sbjct: 482 KPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQ 541
Query: 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSL-QEHNISLTKVAYTTIIKAH 563
L N+M + P TY++LI+GL + A LL+ L E ++ + V Y T+I+ +
Sbjct: 542 LHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFYEESVP-SDVTYHTLIE-N 599
Query: 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623
C+ + ++ KG ++ D F ML PD +M+ + GD
Sbjct: 600 CSNIEFKSVVSLIKGFCMKGM-MTEADQV---FESMLGKNHKPDGTAYNIMIHGHCRAGD 655
Query: 624 LGSVFELAAVMIKSGLL 640
+ + L M+KSG L
Sbjct: 656 IRKAYTLYKEMVKSGFL 672
|
|
| TAIR|locus:2168078 AT5G59900 "AT5G59900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 171/580 (29%), Positives = 302/580 (52%)
Query: 12 VHDAVFVIAKMKELDLKVSIQTYNSLLYNL---RHTDIMWDLYDDIKVSE-TPRNVYTNS 67
V +AV + + DLK + TY +L+Y L + +I ++ D++ +P +S
Sbjct: 278 VWEAVGIKKDLAGKDLKPDVVTYCTLVYGLCKVQEFEIGLEMMDEMLCLRFSPSEAAVSS 337
Query: 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127
+V +GL ++ ++++A+ ++ P++ NA++ CK A+ LF M K
Sbjct: 338 LV-EGLRKRGKIEEALNLVKRVVDFGVSPNLFVYNALIDSLCKGRKFHEAELLFDRMGKI 396
Query: 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187
GL P+ +Y+ILI C G ++ AL F +M G++ Y+ L G IS A
Sbjct: 397 GLRPNDVTYSILIDMFCRRGKLDTALSFLGEMVDTGLKLSVYPYNSLINGHCKFGDISAA 456
Query: 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS 247
+ +++ K +P +VTYT L+ GYC G + + L+L M +G ++ ++ LLS
Sbjct: 457 EGFMAEMINKKLEPTVVTYTSLMGGYCSKGKINKALRLYHEMTGKGIAPSIYTFTTLLSG 516
Query: 248 MCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307
+ ++G I +A+ L EM +KP+ VTY+++I G C++ + KA + EM K I P+
Sbjct: 517 LFRAGLIRDAVKLFNEMAEWNVKPNRVTYNVMIEGYCEEGDMSKAFEFLKEMTEKGIVPD 576
Query: 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367
++++ ++ GLC +EA+++ D L NC + + Y ++ G+ + G + EA+ + +
Sbjct: 577 TYSYRPLIHGLCLTGQASEAKVFVDGLHKGNCELNEICYTGLLHGFCREGKLEEALSVCQ 636
Query: 368 QLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIK-LH--GLEPSAVTYTTFMNAYC 424
+++++ + +V + LI G K+ D + +K +H GL+P V YT+ ++A
Sbjct: 637 EMVQRGVDLDLVCYGVLIDGSLKH---KDRKLFFGLLKEMHDRGLKPDDVIYTSMIDAKS 693
Query: 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI 484
+ G+ + + M + P VTYT VI GLCK + EA L M + P+Q+
Sbjct: 694 KTGDFKEAFGIWDLMINEGCVPNEVTYTAVINGLCKAGFVNEAEVLCSKMQPVSSVPNQV 753
Query: 485 TYNTIIRSFCKCK-DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVS 543
TY + K + D++KA +L N + L L +ATYN+LI G C G ++ A L+
Sbjct: 754 TYGCFLDILTKGEVDMQKAVELHNAI-LKGLLANTATYNMLIRGFCRQGRIEEASELITR 812
Query: 544 LQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583
+ +S + YTT+I C DV KA+ + M EKG
Sbjct: 813 MIGDGVSPDCITYTTMINELCRRNDVKKAIELWNSMTEKG 852
|
|
| TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 710 (255.0 bits), Expect = 4.3e-70, P = 4.3e-70
Identities = 170/606 (28%), Positives = 305/606 (50%)
Query: 34 YNSLLYNLRHT---DIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETA 90
Y +L L + D M + +D+K S T I+I+ Q LQD IL + +
Sbjct: 86 YEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLILIESYAQ-FELQDEILSVVDWM 144
Query: 91 GKEFG--PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148
EFG P N +++ ++ + M +G+ PD ++N+LI LC A
Sbjct: 145 IDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIKALCRAHQ 204
Query: 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTV 208
+ A+ DM +G+ PD T++ + +G+ + GA ++ ++++ G V+ V
Sbjct: 205 LRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSWSNVSVNV 264
Query: 209 LICGYCQIGNVEEGLKLREVMLSQ-GFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267
++ G+C+ G VE+ L + M +Q GF + ++ L++ +CK+G + A+ ++ M
Sbjct: 265 IVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQE 324
Query: 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEA 327
G PD+ TY+ +I GLCK +V +A+++ ++M ++ SPN+ + ++ LC++ + EA
Sbjct: 325 GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEA 384
Query: 328 RMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYG 387
L + DV +N +I G N A++L+ ++ K P T+N LI
Sbjct: 385 TELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDS 444
Query: 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT 447
C GK+ +A +L ++L G S +TY T ++ +C+ + + EME +
Sbjct: 445 LCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVHGVSRN 504
Query: 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLN 507
VTY +I GLCK ++++A QL++ M + G PD+ TYN+++ FC+ D++KA ++
Sbjct: 505 SVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQ 564
Query: 508 QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567
M + EP TY LI GLC G ++ A LL S+Q I+LT AY +I+ +
Sbjct: 565 AMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHAYNPVIQGLFRKR 624
Query: 568 DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG--GDLG 625
+A+ F +M+E+ E + L NG P +E + ++ +G +
Sbjct: 625 KTTEAINLFREMLEQN-EAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFS 683
Query: 626 SVFELA 631
S++ LA
Sbjct: 684 SLYMLA 689
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| TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 668 (240.2 bits), Expect = 2.0e-69, Sum P(2) = 2.0e-69
Identities = 153/500 (30%), Positives = 261/500 (52%)
Query: 87 QETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIA 146
QE + G +V +LN +++ CK G E + + G++PD +YN LI
Sbjct: 224 QEISRSGVGINVYTLNIMVNALCKDGKMEKVGTFLSQVQEKGVYPDIVTYNTLISAYSSK 283
Query: 147 GSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTY 206
G MEEA E N M G P TY+ + G + A +V ++L G PD TY
Sbjct: 284 GLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTY 343
Query: 207 TVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA 266
L+ C+ G+V E K+ M S+ +++ +S ++S +SG +D+AL ++
Sbjct: 344 RSLLMEACKKGDVVETEKVFSDMRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKE 403
Query: 267 VGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITE 326
GL PD V Y+ILI+G C++ + A+ L NEM + + + + IL GLC+++M+ E
Sbjct: 404 AGLIPDNVIYTILIQGYCRKGMISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGE 463
Query: 327 ARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386
A F+ + D I+IDG+ KLGN+ A++L++++ EKRI +VT+N+L+
Sbjct: 464 ADKLFNEMTERALFPDSYTLTILIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLD 523
Query: 387 GFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGP 446
GF K G + A+ + + + P+ ++Y+ +NA C +G++ + EM +K I P
Sbjct: 524 GFGKVGDIDTAKEIWADMVSKEILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKP 583
Query: 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLL 506
T + +IKG C+ + LE M G PD I+YNT+I F + +++ KAF L+
Sbjct: 584 TVMICNSMIKGYCRSGNASDGESFLEKMISEGFVPDCISYNTLIYGFVREENMSKAFGLV 643
Query: 507 NQMWLHN--LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564
+M L P TYN ++ G C +K A+ +L + E ++ + YT +I
Sbjct: 644 KKMEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFV 703
Query: 565 AEGDVHKAMTFFCQMVEKGF 584
++ ++ +A +M+++GF
Sbjct: 704 SQDNLTEAFRIHDEMLQRGF 723
|
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| TAIR|locus:2019085 AT1G74580 "AT1G74580" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 163/601 (27%), Positives = 299/601 (49%)
Query: 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYN---SLLYNLRHTDIMWDLYDDIKVSETPRN 62
Y R G V +AV V +M D + ++ +YN S+L + + D +Y ++ +
Sbjct: 86 YGRKGKVQEAVNVFERMDFYDCEPTVFSYNAIMSVLVDSGYFDQAHKVYMRMRDRGITPD 145
Query: 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFC 122
VY+ +I + C+ SR A+ L + + +VV+ ++ + + F LF
Sbjct: 146 VYSFTIRMKSFCKTSRPHAALRLLNNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFG 205
Query: 123 LMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLS 182
ML G+ ++N L+ LC G ++E + + + + GV P+ TY++ +G
Sbjct: 206 KMLASGVSLCLSTFNKLLRVLCKKGDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRG 265
Query: 183 QISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242
++ GA +++ L+ +G PD++TY LI G C+ +E M+++G + + Y+
Sbjct: 266 ELDGAVRMVGCLIEQGPKPDVITYNNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYN 325
Query: 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302
L++ CK G + A ++ + G PD TY LI GLC + + ++A+ L+NE K
Sbjct: 326 TLIAGYCKGGMVQLAERIVGDAVFNGFVPDQFTYRSLIDGLCHEGETNRALALFNEALGK 385
Query: 303 RISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEA 362
I PN + ++ GL + MI EA + + I +V +NI+++G K+G + +A
Sbjct: 386 GIKPNVILYNTLIKGLSNQGMILEAAQLANEMSEKGLIPEVQTFNILVNGLCKMGCVSDA 445
Query: 363 VQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNA 422
L + +I K P I TFN LI+G+ K+ +A +LD + +G++P TY + +N
Sbjct: 446 DGLVKVMISKGYFPDIFTFNILIHGYSTQLKMENALEILDVMLDNGVDPDVYTYNSLLNG 505
Query: 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD 482
C+ + ++ + M K P T+ ++++ LC+ KL EA+ LLE+M V PD
Sbjct: 506 LCKTSKFEDVMETYKTMVEKGCAPNLFTFNILLESLCRYRKLDEALGLLEEMKNKSVNPD 565
Query: 483 QITYNTIIRSFCKCKDLRKAFQLLNQMW-LHNLEPTSATYNILIDGLCVNGDLKNADCLL 541
+T+ T+I FCK DL A+ L +M + + ++ TYNI+I ++ A+ L
Sbjct: 566 AVTFGTLIDGFCKNGDLDGAYTLFRKMEEAYKVSSSTPTYNIIIHAFTEKLNVTMAEKLF 625
Query: 542 VSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLS 601
+ + + Y ++ C G+V+ F +M+E GF S+ + C+ +
Sbjct: 626 QEMVDRCLGPDGYTYRLMVDGFCKTGNVNLGYKFLLEMMENGFIPSLTTLGRVINCLCVE 685
Query: 602 N 602
+
Sbjct: 686 D 686
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| TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 693 (249.0 bits), Expect = 2.7e-68, P = 2.7e-68
Identities = 153/543 (28%), Positives = 286/543 (52%)
Query: 7 SRTGM----VHDAVFVIAKMKELDLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSET 59
SR G+ + DAV + +M + SI ++ LL + D++ L + ++
Sbjct: 53 SRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSAIAKMNKFDVVISLGEQMQNLGI 112
Query: 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119
P N YT SI+I+ C++S+L A+ L + + P++V+L+++++ YC A
Sbjct: 113 PHNHYTYSILINCFCRRSQLPLALAVLGKMMKLGYEPNIVTLSSLLNGYCHSKRISEAVA 172
Query: 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179
L M G P+ ++N LIHGL + EA+ + M G +PD +TY ++ G
Sbjct: 173 LVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLC 232
Query: 180 LLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI 239
A+ ++ K+ +P ++ Y +I G C+ ++++ L L + M ++G + NV+
Sbjct: 233 KRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVV 292
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
YS L+S +C GR +A LL +M + PD+ T+S LI K+ K+ +A +LY+EM
Sbjct: 293 TYSSLISCLCNYGRWSDASRLLSDMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEM 352
Query: 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359
+ I P+ + +++ G C + + EA+ F+ ++ +C DVV YN +I G+ K +
Sbjct: 353 VKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRV 412
Query: 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF 419
E ++++R++ ++ + + VT+N LI G + G A+ + + G+ P+ +TY T
Sbjct: 413 EEGMEVFREMSQRGLVGNTVTYNILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTL 472
Query: 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479
++ C+ G +++ + + + ++ + PT TY ++I+G+CK K+++ L ++ + GV
Sbjct: 473 LDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGMCKAGKVEDGWDLFCNLSLKGV 532
Query: 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADC 539
PD + YNT+I FC+ +A L +M P S YN LI +GD + A
Sbjct: 533 KPDVVAYNTMISGFCRKGSKEEADALFKEMKEDGTLPNSGCYNTLIRARLRDGD-REASA 591
Query: 540 LLV 542
L+
Sbjct: 592 ELI 594
|
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| TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 691 (248.3 bits), Expect = 4.4e-68, P = 4.4e-68
Identities = 154/491 (31%), Positives = 255/491 (51%)
Query: 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161
N +++ + G + K ++ ML+ + P+ ++YN +++G C G++EEA ++ + +
Sbjct: 187 NTLLNSLARFGLVDEMKQVYMEMLEDKVCPNIYTYNKMVNGYCKLGNVEEANQYVSKIVE 246
Query: 162 HGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEE 221
G++PD TY+ L G+ + A+KV ++ +KG + V YT LI G C ++E
Sbjct: 247 AGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVAYTHLIHGLCVARRIDE 306
Query: 222 GLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIR 281
+ L M V Y+VL+ S+C S R EAL L+ EME G+KP++ TY++LI
Sbjct: 307 AMDLFVKMKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLID 366
Query: 282 GLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQ 341
LC Q K KA +L +M K + PN + A++ G C++ MI +A + +
Sbjct: 367 SLCSQCKFEKARELLGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSP 426
Query: 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLL 401
+ YN +I GY K N+ +A+ + +++E+++ P +VT+NSLI G C++G A RLL
Sbjct: 427 NTRTYNELIKGYCK-SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLL 485
Query: 402 DTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ 461
+ GL P TYT+ +++ C+ ++ L +E K + P V YT +I G CK
Sbjct: 486 SLMNDRGLVPDQWTYTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKA 545
Query: 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATY 521
K+ EA +LE M P+ +T+N +I C L++A L +M L+PT +T
Sbjct: 546 GKVDEAHLMLEKMLSKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTD 605
Query: 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581
ILI L +GD +A + YTT I+ +C EG + A +M E
Sbjct: 606 TILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLDAEDMMAKMRE 665
Query: 582 KGFEISIRDYT 592
G + Y+
Sbjct: 666 NGVSPDLFTYS 676
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| TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
Identities = 169/603 (28%), Positives = 294/603 (48%)
Query: 9 TGMVHDAVF------VIAKMKELDLKVSI-QTYNSLLYNLRHTDIMWDLYDDIKVSETPR 61
TG + A+F V + + + KVS + S + +++ D + DL+ ++ S PR
Sbjct: 12 TGTLRTALFLSCYGRVFSSVSDGKGKVSYRERLRSGIVDIKEDDAV-DLFQEMTRSR-PR 69
Query: 62 NVYTNSIVIDGLCQQSRLQDAILFL-QETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
+ + + +++ D +L L ++ K ++ +L+ +++ C+ +A
Sbjct: 70 PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
++K G PD +++ LI+GLC+ G + EALE + M G +P IT + L G L
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA 240
++S A +I +++ G P+ VTY ++ C+ G ++L M + KL+ +
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
YS+++ +CK G +D A L EME G K D++ Y+ LIRG C + +L +M
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
++I+P+ A A++ ++ + EA +I D V Y +IDG+ K +
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
+A + ++ K P+I TFN LI G+CK + D L + L G+ VTY T +
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLI 429
Query: 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT 480
+CE G ++ L QEM ++ + P V+Y +++ GLC + ++A+++ E + +
Sbjct: 430 QGFCELGKLEVAKELFQEMVSRRVRPDIVSYKILLDGLCDNGEPEKALEIFEKIEKSKME 489
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540
D YN II C + A+ L + L ++P TYNI+I GLC G L AD L
Sbjct: 490 LDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKGVKPDVKTYNIMIGGLCKKGSLSEADLL 549
Query: 541 LVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600
++E S Y +I+AH EGD K+ ++ GF + T ML
Sbjct: 550 FRKMEEDGHSPNGCTYNILIRAHLGEGDATKSAKLIEEIKRCGFSVDAS--TVKMVVDML 607
Query: 601 SNG 603
S+G
Sbjct: 608 SDG 610
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| TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 155/507 (30%), Positives = 257/507 (50%)
Query: 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY-GLHPDAFSY 136
++ DAI + P+ + N + S + ++ G FC ++ G+ D ++
Sbjct: 50 KVNDAIDLFESMIQSRPLPTPIDFNRLCSAVARTKQYDLVLG-FCKGMELNGIEHDMYTM 108
Query: 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196
I+I+ C + A + G EPD IT+S L GF L ++S A ++ +++
Sbjct: 109 TIMINCYCRKKKLLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVE 168
Query: 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256
PD+VT + LI G C G V E L L + M+ GF+ + + Y +L+ +CKSG
Sbjct: 169 MKQRPDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSAL 228
Query: 257 ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316
AL L +ME +K +V YSI+I LCK A+ L+NEM K I + + +++
Sbjct: 229 ALDLFRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIG 288
Query: 317 GLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376
GLC + +I N I DVV ++ +ID +VK G + EA +LY ++I + I+P
Sbjct: 289 GLCNDGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAP 348
Query: 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALL 436
+T+NSLI GFCK + +A ++ D + G EP VTY+ +N+YC+ + + L
Sbjct: 349 DTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLF 408
Query: 437 QEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496
+E+ +K + P +TY ++ G C+ KL A +L ++M GV P +TY ++ C
Sbjct: 409 REISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDN 468
Query: 497 KDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAY 556
+L KA ++ +M + YNI+I G+C + +A L SL + + V Y
Sbjct: 469 GELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSDKGVKPDVVTY 528
Query: 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583
+I C +G + +A F +M E G
Sbjct: 529 NVMIGGLCKKGSLSEADMLFRKMKEDG 555
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LMY5 | PPR41_ARATH | No assigned EC number | 0.5358 | 0.9706 | 0.7602 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00021153001 | SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (829 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 647 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-30 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-25 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 4e-22 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-20 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-17 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-16 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-15 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 7e-15 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-14 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 6e-14 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 7e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-12 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-12 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 2e-10 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 1e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-09 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-09 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 5e-08 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-08 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-07 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-06 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 5e-06 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-06 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 6e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-05 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 4e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 1e-04 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 3e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 4e-04 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 4e-04 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 4e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 5e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 7e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.002 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 2e-30
Identities = 87/385 (22%), Positives = 176/385 (45%), Gaps = 7/385 (1%)
Query: 147 GSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTY 206
+++EA F + P T+++L I GA +V++ + G D Y
Sbjct: 420 RAVKEAFRFAKLI----RNPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLY 475
Query: 207 TVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA 266
T LI + G V+ ++ M++ G + NV + L+ ++G++ +A G M +
Sbjct: 476 TTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS 535
Query: 267 VGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC--SKRISPNSFAHGAILLGLCEKEMI 324
+KPD V ++ LI + V +A + EM + I P+ GA++ +
Sbjct: 536 KNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQV 595
Query: 325 TEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384
A+ + + N +Y I ++ + G+ A+ +Y + +K + P V F++L
Sbjct: 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSAL 655
Query: 385 IYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI 444
+ G + A +L + G++ V+Y++ M A N ++ L L +++++ +
Sbjct: 656 VDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKL 715
Query: 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504
PT T +I LC+ +L +A+++L +M +G+ P+ ITY+ ++ + + D
Sbjct: 716 RPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLD 775
Query: 505 LLNQMWLHNLEPTSATYNILIDGLC 529
LL+Q ++P + GLC
Sbjct: 776 LLSQAKEDGIKPNLVMCRCIT-GLC 799
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-25
Identities = 81/342 (23%), Positives = 141/342 (41%), Gaps = 39/342 (11%)
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300
+++L+S S ID AL +L ++ GLK D Y+ LI K KV ++++EM
Sbjct: 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMV 499
Query: 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG 360
+ + N GA +IDG + G +
Sbjct: 500 NAGVEANVHTFGA-----------------------------------LIDGCARAGQVA 524
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIK--LHGLEPSAVTYTT 418
+A Y + K + P V FN+LI ++G V A +L +K H ++P +T
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 419 FMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG 478
M A G + R + Q + I T YT+ + ++ A+ + +DM G
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
Query: 479 VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN-GDLKNA 537
V PD++ ++ ++ DL KAF++L ++ + +Y+ L+ G C N + K A
Sbjct: 645 VKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLM-GACSNAKNWKKA 703
Query: 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579
L ++ + T +I A C + KA+ +M
Sbjct: 704 LELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEM 745
|
Length = 1060 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 90/400 (22%), Positives = 171/400 (42%), Gaps = 51/400 (12%)
Query: 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHT---DIMWDLYDDIKVS 57
ML V + + + A+ V+ ++E LK + Y +L+ + D M++++ ++ +
Sbjct: 442 MLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNA 501
Query: 58 ETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVA 117
NV+T +IDG C + AG +VA
Sbjct: 502 GVEANVHTFGALIDG-CAR-------------AG-----------------------QVA 524
Query: 118 K--GLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMG--RHGVEPDAITYSI 173
K G + +M + PD +N LI +G+++ A + +M H ++PD IT
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGA 584
Query: 174 LAKGFHLLSQISGA---WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230
L K Q+ A +++I + IKG+ P++ T V C Q G+ + L + + M
Sbjct: 585 LMKACANAGQVDRAKEVYQMIHEYNIKGT-PEVYTIAVNSCS--QKGDWDFALSIYDDMK 641
Query: 231 SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVH 290
+G K + + +S L+ +G +D+A +L + G+K V+YS L+
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 291 KAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMI 350
KA++LY ++ S ++ P A++ LCE + +A + + + Y+I++
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761
Query: 351 DGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK 390
+ + + L Q E I P++V + G C
Sbjct: 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCL 800
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 2e-20
Identities = 100/467 (21%), Positives = 187/467 (40%), Gaps = 82/467 (17%)
Query: 91 GKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150
P ++++ +++S LG + + + ++K G D N LI GS
Sbjct: 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWG 340
Query: 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLI 210
EA + + M DA++++ + G+ A + + PD +T ++
Sbjct: 341 EAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL 396
Query: 211 CGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270
+G+++ G+KL E+ +G V+ + L+ K ID+AL + + + +
Sbjct: 397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIP----E 452
Query: 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG-------LCEKEM 323
D+++++ +I GL ++ +A+ + +M + PNS A L +C KE+
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI 511
Query: 324 ---ITEARMYFDSLI--------------------MSNCIQDVVLYNIMIDGYVKLGNIG 360
+ + FD + ++ +DVV +NI++ GYV G
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGS 571
Query: 361 EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420
AV+L+ +++E ++P VTF SL+ ++G V GLE
Sbjct: 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQ-----------GLE---------- 610
Query: 421 NAYCEEGNIQRLLALLQEMETK-AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479
ME K +I P Y V+ L + KL EA + M +
Sbjct: 611 --------------YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PI 653
Query: 480 TPDQITYNTIIRSFCKCKDLRKA-FQLLNQMWLHNLEPTSATYNILI 525
TPD + ++ + C+ R L + L+P S Y IL+
Sbjct: 654 TPDPAVWGALLNA---CRIHRHVELGELAAQHIFELDPNSVGYYILL 697
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 3e-17
Identities = 79/351 (22%), Positives = 156/351 (44%), Gaps = 25/351 (7%)
Query: 94 FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD--AFSYNILIHGLCIAGSMEE 151
F P +N ++ + K G A+ LF M P+ S+ +I GL AG+ E
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYRE 207
Query: 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLIC 211
A +M G + + T+ ++ + S G+ + Q+L +V T + C
Sbjct: 208 AFALFREMWEDGSDAEPRTFVVMLRA----SAGLGSARAGQQLHCCVLKTGVVGDTFVSC 263
Query: 212 G----YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267
Y + G++E+ + + M + +A++ +L+ G +EAL L YEM
Sbjct: 264 ALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDS 319
Query: 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEA 327
G+ D T+SI+IR + + A Q + + + A+ A++ + + +A
Sbjct: 320 GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA 379
Query: 328 RMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYG 387
R FD + N I +N +I GY G +AV+++ ++I + ++P+ VTF +++
Sbjct: 380 RNVFDRMPRKNLIS----WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA 435
Query: 388 FCKNGKVADARRLLDTI-KLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437
+G + ++ + H ++P A+ Y + EG + A+++
Sbjct: 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIR 486
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 82.6 bits (204), Expect = 2e-16
Identities = 86/403 (21%), Positives = 164/403 (40%), Gaps = 20/403 (4%)
Query: 140 IHGLCIAGSMEEALE-FTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG 198
I L G EALE F A TY L + L I V + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 199 SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258
+PD ++ + + G + + +L + M + N+ ++ ++ + +G EA
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAF 209
Query: 259 GLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGL 318
L EM G + T+ +++R QL+ + + ++F A++
Sbjct: 210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMY 269
Query: 319 CEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSI 378
+ I +AR FD + V +N M+ GY G EA+ LY ++ + +S
Sbjct: 270 SKCGDIEDARCVFDGMPEKT----TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQ 325
Query: 379 VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQE 438
TF+ +I F + + A++ + G V T ++ Y + G ++ +
Sbjct: 326 FTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDR 385
Query: 439 METKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD 498
M K + +++ +I G + +AV++ E M GV P+ +T+ ++ S C+
Sbjct: 386 MPRKNL----ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL-SACRYSG 440
Query: 499 L----RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537
L + FQ +++ H ++P + Y +I+ L G L A
Sbjct: 441 LSEQGWEIFQSMSEN--HRIKPRAMHYACMIELLGREGLLDEA 481
|
Length = 697 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 9e-16
Identities = 23/49 (46%), Positives = 33/49 (67%)
Query: 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC 529
PD +TYNT+I +CK + +A +L N+M ++P TY+ILIDGLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 70.5 bits (174), Expect = 1e-15
Identities = 25/49 (51%), Positives = 36/49 (73%)
Query: 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285
+V+ Y+ L+ CK G+++EAL L EM+ G+KP++ TYSILI GLCK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (192), Expect = 7e-15
Identities = 110/564 (19%), Positives = 215/564 (38%), Gaps = 86/564 (15%)
Query: 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196
N + LC G +E+AL+ M V D Y L + + +V + L
Sbjct: 55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALS 114
Query: 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256
+ ++ + + G + + M + ++ +++VL+ K+G DE
Sbjct: 115 SHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDE 170
Query: 257 ALGLLYEMEAVGLKPDLVTYSILIRG------LCKQDKVHKAIQLYN-EMCSKRISPNSF 309
AL L + M G++PD+ T+ ++R L + +VH + + E+ ++
Sbjct: 171 ALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVN---- 226
Query: 310 AHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQL 369
A++ + + AR+ FD + +CI +N MI GY + G E ++L+ +
Sbjct: 227 ---ALITMYVKCGDVVSARLVFDRMPRRDCIS----WNAMISGYFENGECLEGLELFFTM 279
Query: 370 IEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429
E + P ++T S+I G R + + G + + Y G+
Sbjct: 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSW 339
Query: 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITY--- 486
+ METK V++T +I G K +A++ M V+PD+IT
Sbjct: 340 GEAEKVFSRMETKDA----VSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395
Query: 487 --------------------------------NTIIRSFCKCKDLRKAFQLLNQMWLHNL 514
N +I + KCK + KA ++ + + ++
Sbjct: 396 LSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDV 455
Query: 515 EPTSATYNILIDGLCVNGDLKNA----DCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDV 569
++ +I GL +N A +L++L+ ++++L + I A ++
Sbjct: 456 ----ISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEI 511
Query: 570 HKAMTFFCQMVEKGF------EISIR----DYTKSFFCMMLSNGFPPDQEICEVMLIAFH 619
H A + GF ++ +R +Y + F D ++L +
Sbjct: 512 H-AHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYV 565
Query: 620 QGGDLGSVFELAAVMIKSGLLPDK 643
G EL M++SG+ PD+
Sbjct: 566 AHGKGSMAVELFNRMVESGVNPDE 589
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 68.2 bits (168), Expect = 1e-14
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 131 PDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGF 178
PD +YN LI G C G +EEAL+ N+M + G++P+ TYSIL G
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 67.8 bits (167), Expect = 1e-14
Identities = 22/49 (44%), Positives = 35/49 (71%)
Query: 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK 390
DVV YN +IDGY K G + EA++L+ ++ ++ I P++ T++ LI G CK
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.7 bits (164), Expect = 4e-14
Identities = 20/49 (40%), Positives = 34/49 (69%)
Query: 376 PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424
P +VT+N+LI G+CK GKV +A +L + +K G++P+ TY+ ++ C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 4e-14
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495
P VTY +I G CK+ K++EA++L +M G+ P+ TY+ +I CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 75.3 bits (185), Expect = 6e-14
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 2/210 (0%)
Query: 376 PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435
P++ TFN L+ + + A R+L ++ GL+ YTT ++ + G + + +
Sbjct: 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEV 494
Query: 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495
EM + T+ +I G + ++ +A M V PD++ +N +I + +
Sbjct: 495 FHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQ 554
Query: 496 CKDLRKAFQLLNQMW--LHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK 553
+ +AF +L +M H ++P T L+ G + A + + E+NI T
Sbjct: 555 SGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTP 614
Query: 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583
YT + + +GD A++ + M +KG
Sbjct: 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKG 644
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 73.7 bits (181), Expect = 1e-13
Identities = 139/629 (22%), Positives = 249/629 (39%), Gaps = 106/629 (16%)
Query: 73 LCQQSRLQDAILFLQETAGKEFGPSVVSL-NAIMSRYCKLGFAEVAKGLFCLMLKYGLHP 131
LC+ R + + A V L NA++S + + G A +F M +
Sbjct: 95 LCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER---- 150
Query: 132 DAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVI 191
D FS+N+L+ G AG +EAL + M GV PD T+ + + + ++ +V
Sbjct: 151 DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVH 210
Query: 192 QKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKS 251
++ G + D+ LI Y + G+V + + M + + I+++ ++S ++
Sbjct: 211 AHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFEN 266
Query: 252 GRIDEALGLLYEMEAVGLKPDLVTYSILIR--GLCKQDKVHKAIQLY--NEMCSKRIS-P 306
G E L L + M + + PDL+T + +I L +++ + + Y + +S
Sbjct: 267 GECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVC 326
Query: 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLY 366
NS + LG EA F + +D V + MI GY K G +A++ Y
Sbjct: 327 NSLIQMYLSLG-----SWGEAEKVFSRM---ET-KDAVSWTAMISGYEKNGLPDKALETY 377
Query: 367 RQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDT-IKLHGLEPSA--VTYTTFMNA- 422
+ + +SP +T S++ G LD +KLH L ++Y NA
Sbjct: 378 ALMEQDNVSPDEITIASVLSACACLG-------DLDVGVKLHELAERKGLISYVVVANAL 430
Query: 423 ---YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479
Y + I + L + + K + +++T +I GL + EA+ M ++ +
Sbjct: 431 IEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQM-LLTL 485
Query: 480 TPDQITY-----------------------------------NTIIRSFCKCKDLRKAFQ 504
P+ +T N ++ + +C + A
Sbjct: 486 KPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYA-- 543
Query: 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564
NQ H E ++NIL+ G +G A L + E ++ +V + +++ A
Sbjct: 544 -WNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACS 600
Query: 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM--------------LSNGFP--PDQ 608
G V + + +F M EK SI K + C++ N P PD
Sbjct: 601 RSGMVTQGLEYFHSMEEK---YSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDP 657
Query: 609 EICEVMLIA--FHQGGDLGSVFELAAVMI 635
+ +L A H+ +LG ELAA I
Sbjct: 658 AVWGALLNACRIHRHVELG---ELAAQHI 683
|
Length = 857 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-13
Identities = 23/49 (46%), Positives = 35/49 (71%)
Query: 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLC 319
PD+VTY+ LI G CK+ KV +A++L+NEM + I PN + + ++ GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 3e-13
Identities = 23/49 (46%), Positives = 31/49 (63%)
Query: 96 PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144
P VV+ N ++ YCK G E A LF M K G+ P+ ++Y+ILI GLC
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.2 bits (155), Expect = 7e-13
Identities = 27/50 (54%), Positives = 33/50 (66%)
Query: 201 PDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCK 250
PD+VTY LI GYC+ G VEE LKL M +G K NV YS+L+ +CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 62.4 bits (153), Expect = 1e-12
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460
P VTY T ++ YC++G ++ L L EM+ + I P TY+++I GLCK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 2e-12
Identities = 85/384 (22%), Positives = 162/384 (42%), Gaps = 46/384 (11%)
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK-LGFAEVAKG 119
RN+ + +I GL ++A +E + + +M R LG A +
Sbjct: 187 RNLASWGTIIGGLVDAGNYREAFALFREMWE-DGSDAEPRTFVVMLRASAGLGSARAGQQ 245
Query: 120 LFCLMLKYGLHPDAF-------------------------------SYNILIHGLCIAGS 148
L C +LK G+ D F ++N ++ G + G
Sbjct: 246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGY 305
Query: 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTV 208
EEAL +M GV D T+SI+ + F L+ + A + L+ G DIV T
Sbjct: 306 SEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTA 365
Query: 209 LICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG 268
L+ Y + G +E+ + + M + N+I+++ L++ GR +A+ + M A G
Sbjct: 366 LVDLYSKWGRMEDARNVFDRMPRK----NLISWNALIAGYGNHGRGTKAVEMFERMIAEG 421
Query: 269 LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC-SKRISPNSFAHGAILLGLCEKEMITEA 327
+ P+ VT+ ++ + +++ M + RI P + + ++ L + ++ EA
Sbjct: 422 VAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEA 481
Query: 328 RMYFDS--LIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLI 385
+ + +L I ++LG + A +LY EK ++ +V N +
Sbjct: 482 YAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLA-AEKLYGMGPEK-LNNYVVLLN--L 537
Query: 386 YGFCKNGKVADARRLLDTIKLHGL 409
Y +G+ A+A ++++T+K GL
Sbjct: 538 YN--SSGRQAEAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (168), Expect = 5e-12
Identities = 63/262 (24%), Positives = 126/262 (48%), Gaps = 18/262 (6%)
Query: 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGL 120
++V + + +I GL +R +A++F ++ P+ V+L A +S ++G K +
Sbjct: 453 KDVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACARIGALMCGKEI 511
Query: 121 FCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180
+L+ G+ D F N L+ G M A N H E D ++++IL G+
Sbjct: 512 HAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW---NQFNSH--EKDVVSWNILLTGYVA 566
Query: 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ-GFKLNVI 239
+ S A ++ +++ G +PD VT+ L+C + G V +GL+ M + N+
Sbjct: 567 HGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLK 626
Query: 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
Y+ ++ + ++G++ EA + +M + PD + L+ C ++H+ ++L E+
Sbjct: 627 HYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNA-C---RIHRHVEL-GEL 678
Query: 300 CSKRI---SPNSFAHGAILLGL 318
++ I PNS + +L L
Sbjct: 679 AAQHIFELDPNSVGYYILLCNL 700
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 2e-10
Identities = 50/248 (20%), Positives = 102/248 (41%), Gaps = 10/248 (4%)
Query: 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLL 401
Y+ +++ + L +I +Y + P N ++ K G + DARRL
Sbjct: 122 PASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLF 181
Query: 402 DTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEM-ETKAIGPTHVTYTVVIKGLCK 460
D + E + ++ T + + GN + AL +EM E + T+ V+++
Sbjct: 182 DEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPR-TFVVMLRASAG 236
Query: 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSAT 520
+ QL + GV D +I + KC D+ A + + M E T+
Sbjct: 237 LGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGM----PEKTTVA 292
Query: 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580
+N ++ G ++G + A CL +++ +S+ + ++ +I+ + A ++
Sbjct: 293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI 352
Query: 581 EKGFEISI 588
GF + I
Sbjct: 353 RTGFPLDI 360
|
Length = 697 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 53.5 bits (130), Expect = 1e-09
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299
GLKPD+VTY+ LI GLC+ +V +A++L +EM
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 5e-09
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 372 KRISPSIVTFNSLIYGFCKNGKVADARRLLD 402
K + P +VT+N+LI G C+ G+V +A LLD
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 51.6 bits (125), Expect = 6e-09
Identities = 13/32 (40%), Positives = 22/32 (68%)
Query: 478 GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509
G+ PD +TYNT+I C+ + +A +LL++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 49.3 bits (119), Expect = 5e-08
Identities = 16/49 (32%), Positives = 23/49 (46%)
Query: 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564
P TYN LIDG C G ++ A L +++ I Y+ +I C
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 48.1 bits (116), Expect = 7e-08
Identities = 17/32 (53%), Positives = 23/32 (71%)
Query: 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159
GL PD +YN LI GLC AG ++EA+E ++M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 1e-07
Identities = 16/35 (45%), Positives = 24/35 (68%)
Query: 274 VTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS 308
VTY+ LI GLCK +V +A++L+ EM + I P+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 46.2 bits (111), Expect = 4e-07
Identities = 16/34 (47%), Positives = 26/34 (76%)
Query: 232 QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265
+G K +V+ Y+ L+ +C++GR+DEA+ LL EME
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 7e-07
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVM 229
KG PD+VTY LI G C+ G V+E ++L + M
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 58/296 (19%), Positives = 114/296 (38%), Gaps = 38/296 (12%)
Query: 371 EKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG-LEPSAVTYTTFMNAYCEEGNI 429
+++ I +N L+ ++G++ D LL+ ++ G L+ + + F A ++ +
Sbjct: 367 KRKSPEYIDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAV 422
Query: 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI 489
+ + + PT T+ +++ + A+++L + G+ D Y T+
Sbjct: 423 KEAFRFAKLIRN----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTL 478
Query: 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI 549
I + K + F++ ++M +E T+ LIDG G + A ++ N+
Sbjct: 479 ISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV 538
Query: 550 SLTKVAYTTIIKAHCAEGDVHKAMTFFCQM-----------VEKGFEISI------RDYT 592
+V + +I A G V +A +M + G + D
Sbjct: 539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRA 598
Query: 593 KSFFCMMLSN---GFPPDQEICEVMLIAFH---QGGDLGSVFELAAVMIKSGLLPD 642
K + M+ G P EV IA + Q GD + M K G+ PD
Sbjct: 599 KEVYQMIHEYNIKGTP------EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPD 648
|
Length = 1060 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 73/339 (21%), Positives = 148/339 (43%), Gaps = 27/339 (7%)
Query: 96 PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEF 155
P +++ +++S LG +V L L + GL N LI +++ALE
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446
Query: 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215
+++ D I+++ + G L ++ A +++L+ P+ VT + +
Sbjct: 447 FHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQMLLT-LKPNSVTLIAALSACAR 501
Query: 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVT 275
IG + G ++ +L G + + LL + GR++ A E D+V+
Sbjct: 502 IGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEK-----DVVS 556
Query: 276 YSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI 335
++IL+ G K A++L+N M ++P+ ++L M+T+ YF S+
Sbjct: 557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSME 616
Query: 336 MSNCIQ-DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL-----IYGFC 389
I ++ Y ++D LG G+ + Y + + I+P + +L I+
Sbjct: 617 EKYSITPNLKHYACVVD---LLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHV 673
Query: 390 KNGKVADARRLLDTIKLHGLEPSAVTYTTFM-NAYCEEG 427
+ G++A A+ + + L+P++V Y + N Y + G
Sbjct: 674 ELGELA-AQHIFE------LDPNSVGYYILLCNLYADAG 705
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 3e-06
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSI 378
V YN +IDG K G + EA++L++++ E+ I P +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 43.1 bits (103), Expect = 5e-06
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474
P VTY +I GLC+ ++ EAV+LL++M
Sbjct: 5 PDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 6e-06
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592
V Y T+I +C +G V +A+ F +M ++G + ++ Y+
Sbjct: 4 VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYS 42
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (102), Expect = 6e-06
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 408 GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEME 440
GL+P VTY T ++ C G + + LL EME
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.8 bits (102), Expect = 6e-06
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTS 518
+TYNT+I CK + +A +L +M +EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 134 FSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA 168
+YN LI GLC AG +EEALE +M G+EPD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 1e-05
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISI 588
V Y T+I C G V +A+ F +M E+G E +
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 239 IAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD 272
+ Y+ L+ +CK+GR++EAL L EM+ G++PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 204 VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV 238
VTY LI G C+ G VEE L+L + M +G + +V
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 4e-05
Identities = 81/309 (26%), Positives = 128/309 (41%), Gaps = 61/309 (19%)
Query: 5 VYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLL--YNLR-HTDIMWDLYDDIKVSETPR 61
+YS+ G + DA V M E + +NS+L Y L +++ LY +++ S
Sbjct: 268 MYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSI 323
Query: 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAG---KEFGPSVVSLNAIMSRYCKLGFAEVAK 118
+ +T SI+I + SRL Q AG F +V+ A++ Y K G E A+
Sbjct: 324 DQFTFSIMI-RIF--SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDAR 380
Query: 119 GLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAIT-------- 170
+F M + S+N LI G G +A+E M GV P+ +T
Sbjct: 381 NVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSAC 436
Query: 171 -YSILA-KG---FHLLSQISG-----------------------AWKVIQKLLIKGSDPD 202
YS L+ +G F +S+ A+ +I++ K P
Sbjct: 437 RYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFK---PT 493
Query: 203 IVTYTVLICGYCQI-GNVEEGLKLREVMLSQG-FKLNVIAYSVLLSSMCKSGRIDEALGL 260
+ + L+ C+I N+E G E + G KLN Y VLL+ SGR EA +
Sbjct: 494 VNMWAALLTA-CRIHKNLELGRLAAEKLYGMGPEKLN--NYVVLLNLYNSSGRQAEAAKV 550
Query: 261 LYEMEAVGL 269
+ ++ GL
Sbjct: 551 VETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 4e-05
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 274 VTYSILIRGLCKQDKVHKAIQLYNEMCSKRI 304
VTY+ LI G CK K+ +A++L+ EM K +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 379 VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA 413
VT+N+LI G CK G+V +A L +K G+EP
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 1e-04
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGF 584
V Y ++I +C G + +A+ F +M EKG
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI 374
V YN +I GY K G + EA++L++++ EK +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 30 SIQTYNSL---LYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQ 75
+ TYN+L + L++++K NVYT SI+IDGLC+
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 2e-04
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 134 FSYNILIHGLCIAGSMEEALEFTNDMGRHGV 164
+YN LI G C AG +EEALE +M GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 204 VTYTVLICGYCQIGNVEEGLKLREVMLSQGF 234
VTY LI GYC+ G +EE L+L + M +G
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.1 bits (90), Expect = 3e-04
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 513 NLEPTSATYNILIDGLCVNGDLKNA 537
L+P TYN LIDGLC G + A
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEA 26
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 37.7 bits (89), Expect = 4e-04
Identities = 9/33 (27%), Positives = 14/33 (42%)
Query: 548 NISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580
+ V Y T+I C G V +A+ +M
Sbjct: 2 GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 37.9 bits (89), Expect = 4e-04
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEP 411
+ T+N+L+ K G A +L+ +K GL+P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.5 bits (98), Expect = 4e-04
Identities = 51/230 (22%), Positives = 83/230 (36%), Gaps = 6/230 (2%)
Query: 113 FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEP-DAITY 171
AE + L + A +L L G +EEALE + P A
Sbjct: 39 LAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEAL 98
Query: 172 SILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML- 230
L L + A ++++K L DPD+ + + ++G+ EE L+L E L
Sbjct: 99 LNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALE 158
Query: 231 -SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV 289
A L + + GR +EAL LL + + D L K K
Sbjct: 159 LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY 218
Query: 290 HKAIQLYNEMCSKRISPNSFAHGAIL-LGLCEKEMITEARMYFDSLIMSN 338
+A++ Y + + P++ L L L E EA + + +
Sbjct: 219 EEALEYYEKA--LELDPDNAEALYNLALLLLELGRYEEALEALEKALELD 266
|
Length = 291 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 37.4 bits (88), Expect = 5e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 484 ITYNTIIRSFCKCKDLRKAFQLLNQM 509
+TYN++I +CK L +A +L +M
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEM 26
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (87), Expect = 7e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQ 368
DVV YN +IDG + G + EAV+L +
Sbjct: 6 DVVTYNTLIDGLCRAGRVDEAVELLDE 32
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 239 IAYSVLLSSMCKSGRIDEALGLLYEMEAVGL 269
+ Y+ L+S CK+G+++EAL L EM+ G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479
VTY +I G CK KL+EA++L ++M GV
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 13/35 (37%), Positives = 18/35 (51%)
Query: 99 VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDA 133
V+ N ++ CK G E A LF M + G+ PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.002
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 379 VTFNSLIYGFCKNGKVADARRLLDTIKLHGL 409
VT+NSLI G+CK GK+ +A L +K G+
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 36.0 bits (84), Expect = 0.002
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 273 LVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISP 306
L TY+ L+ L K A+ + EM + + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKP 271
+ Y+ LL ++ K+G D AL +L EM+A GLKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 6/34 (17%), Positives = 15/34 (44%)
Query: 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376
+ YN ++ K G+ A+ + ++ + P
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.003
Identities = 10/32 (31%), Positives = 16/32 (50%)
Query: 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP 516
TYN ++ + K D A +L +M L+P
Sbjct: 3 TYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 100.0 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.97 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.95 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.93 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.91 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.91 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.91 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.9 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.89 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.88 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.88 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.87 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.85 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.82 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.81 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.8 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.79 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.76 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.74 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.72 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.71 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.71 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.7 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.69 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.69 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.69 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.69 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.68 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.68 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.67 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.67 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.67 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.66 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.66 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.64 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.64 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.63 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.62 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.61 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.61 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 99.61 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.61 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.6 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.55 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.54 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.53 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.51 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.49 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.48 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.48 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.44 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.44 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.43 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.43 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.43 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.41 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.4 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.4 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 99.39 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 99.35 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.34 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.33 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.29 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.29 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 99.26 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.26 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.25 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 99.24 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.21 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.18 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.18 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.12 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.12 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.11 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 99.08 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.06 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.06 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 99.04 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 99.03 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.96 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.94 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.93 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.92 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.91 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.91 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.91 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.9 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.9 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.89 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.86 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.85 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.85 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.82 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.8 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.8 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.77 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.72 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.72 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.69 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.68 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.62 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.6 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.59 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.58 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.52 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.47 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.47 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.45 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.44 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.44 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.41 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.35 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.35 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.27 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.27 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.21 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.2 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.15 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.14 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.14 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 98.13 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 98.12 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.1 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.06 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.05 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.05 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.04 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.03 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.01 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.98 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.98 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.96 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.96 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.95 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 97.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.92 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.92 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.91 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.91 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.88 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.87 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.86 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.85 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.81 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.8 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.79 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.78 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.78 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.76 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.74 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.74 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.72 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.71 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.71 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.7 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.68 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.67 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.67 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.66 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.64 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.62 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.58 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.56 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.52 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.51 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.48 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.44 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.41 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.34 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.32 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.32 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.32 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.29 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 97.25 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.24 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 97.24 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 97.22 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.22 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 97.19 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 97.18 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 97.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.09 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.08 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.02 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.0 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.98 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.94 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.94 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.92 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.91 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.89 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.87 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.85 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.85 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 96.81 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 96.72 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.7 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.67 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.63 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 96.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 96.49 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.41 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.4 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 96.4 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.4 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.36 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 96.33 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.31 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 96.28 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 96.24 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 96.23 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.16 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.15 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.12 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 96.11 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 96.06 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 96.01 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 95.99 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 95.99 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.96 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.93 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.89 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 95.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.81 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.76 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.73 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.68 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.65 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 95.63 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.52 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 95.52 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 95.46 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.42 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 95.39 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 95.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.26 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 95.23 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 95.14 | |
| KOG2396 | 568 | consensus HAT (Half-A-TPR) repeat-containing prote | 95.11 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 94.89 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.85 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.71 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 94.59 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.56 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 94.54 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.4 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 94.36 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 94.32 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 94.26 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 94.21 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 94.18 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 94.12 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.82 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.74 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.73 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 93.5 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 93.47 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 93.28 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.18 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 93.17 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 93.16 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 93.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 92.96 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 92.73 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 92.56 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.54 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 92.42 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 92.29 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 92.1 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 91.92 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.59 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 91.4 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.3 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 90.64 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 90.64 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 90.61 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 90.61 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 90.33 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 90.28 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 90.21 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 90.21 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 89.83 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 89.67 | |
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 89.42 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 89.35 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.22 | |
| KOG1308 | 377 | consensus Hsp70-interacting protein Hip/Transient | 89.21 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.1 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 89.08 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 89.01 | |
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 88.92 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 88.54 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 88.45 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 88.43 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 88.42 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 88.41 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 88.23 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 88.04 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.88 | |
| KOG4521 | 1480 | consensus Nuclear pore complex, Nup160 component [ | 87.88 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 87.72 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.68 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 87.63 | |
| PRK09687 | 280 | putative lyase; Provisional | 87.58 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 87.29 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.28 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 86.47 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 86.07 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 85.94 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.87 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 85.66 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 85.34 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 84.89 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 84.87 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 84.84 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 84.79 | |
| KOG2471 | 696 | consensus TPR repeat-containing protein [General f | 84.18 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 83.59 | |
| KOG4642 | 284 | consensus Chaperone-dependent E3 ubiquitin protein | 83.1 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 82.29 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 82.26 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 82.13 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 82.1 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 81.84 | |
| KOG0545 | 329 | consensus Aryl-hydrocarbon receptor-interacting pr | 81.55 | |
| KOG4507 | 886 | consensus Uncharacterized conserved protein, conta | 80.2 |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-76 Score=622.12 Aligned_cols=618 Identities=17% Similarity=0.253 Sum_probs=536.3
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHH-----------------------------------HHHHH---hcCC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTY-----------------------------------NSLLY---NLRH 43 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~ll~---~~~~ 43 (647)
++..|.+.|++++|..+|+.+.+.|+.|+..++ +.++. +.|+
T Consensus 57 ~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~ 136 (857)
T PLN03077 57 QLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGE 136 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCC
Confidence 456677777777777777777776655555554 44444 5677
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 44 TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCL 123 (647)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~ 123 (647)
++.|.++|+.+.. +|..+|+.++.+|.+.|++++|..+|++|...|+.||..+|..++.+|...+++..+.+++..
T Consensus 137 ~~~A~~~f~~m~~----~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~ 212 (857)
T PLN03077 137 LVHAWYVFGKMPE----RDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAH 212 (857)
T ss_pred hHHHHHHHhcCCC----CCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHH
Confidence 7777777777754 677888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc
Q 006396 124 MLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI 203 (647)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 203 (647)
+.+.|+.|+..+++.++.+|++.|++++|.++|++| ..||..+|+.++.+|.+.|++++|+++|++|...|+.||.
T Consensus 213 ~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m----~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~ 288 (857)
T PLN03077 213 VVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRM----PRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDL 288 (857)
T ss_pred HHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcC----CCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCh
Confidence 888888888888999999999999999999999998 4678899999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHH
Q 006396 204 VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGL 283 (647)
Q Consensus 204 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 283 (647)
.+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|. .||..+|+.++.+|
T Consensus 289 ~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~ 364 (857)
T PLN03077 289 MTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGY 364 (857)
T ss_pred hHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999986 56888999999999
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006396 284 CKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363 (647)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (647)
++.|++++|+++|++|.+.|+.|+..++..++.+|++.|+++.+.++++.+.+.|..++..+++.++.+|++.|++++|.
T Consensus 365 ~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~ 444 (857)
T PLN03077 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKAL 444 (857)
T ss_pred HhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 364 QLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
++|++|.+ +|..+|+.++.+|.+.|+.++|..+|++|.. +++||..+|+.++.+|++.|+.+.+.+++..+.+.|
T Consensus 445 ~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g 519 (857)
T PLN03077 445 EVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTG 519 (857)
T ss_pred HHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhC
Confidence 99998864 5888999999999999999999999999976 588999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
+.++..+++.++.+|++.|+.++|.++|+.+ .+|..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|+.
T Consensus 520 ~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 520 IGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred CCccceechHHHHHHHHcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 8888888999999999999999998888876 67888999999999999999999999999998888999999999
Q ss_pred HHHHHhhcCChhhHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh--
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQ-EHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML-- 600 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 600 (647)
++.+|.+.|++++|.++|+.|. +.|+.|+..+|..++.++.+.|++++|.+++++| .+.|+...|..++.....
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m---~~~pd~~~~~aLl~ac~~~~ 671 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKM---PITPDPAVWGALLNACRIHR 671 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence 9999999999999999999998 5788899999999999999999999999998887 367777777644432211
Q ss_pred ------------hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 601 ------------SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 601 ------------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
-.--|.+...|..+.+.|...|+|++|.++.+.|.+.|++++..
T Consensus 672 ~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g 727 (857)
T PLN03077 672 HVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPG 727 (857)
T ss_pred ChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCC
Confidence 01125567888889999999999999999999999999998764
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-74 Score=613.02 Aligned_cols=592 Identities=18% Similarity=0.251 Sum_probs=387.9
Q ss_pred CcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHH
Q 006396 28 KVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAI 104 (647)
Q Consensus 28 ~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (647)
.|+...++.++. +.|++++|..+|+.+...+.+++..+|..++..+...+.++.+..++..+...++.++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 356667777777 88999999999999998888888888877777777777777777777777766666666667777
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+..|.+.|+.+.|.++|++|. .||..+|+.+|.+|++.|++++|.++|++|...|+.||..||+.++.++...+++
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~ 203 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDL 203 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccch
Confidence 777777777777777777765 4566677777777777777777777777777667777777777777776666666
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
..+.+++..+.+.|..||..+++.++..|++.|+++.|.++|+.|.. +|..+|+.++.+|++.|+.++|.++|++|
T Consensus 204 ~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M 279 (857)
T PLN03077 204 ARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTM 279 (857)
T ss_pred hhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence 66666666666666666666666666666666766666666666642 46666666666666666666666666666
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 006396 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV 344 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 344 (647)
...|+.||..+|+.++.+|++.|+.+.+.+++..+.+.|+.||..+++.++..|++.|++++|.++|+.+. .||..
T Consensus 280 ~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~ 355 (857)
T PLN03077 280 RELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAV 355 (857)
T ss_pred HHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCee
Confidence 66666666666666666666666666666666666666666666666666666666666666666666654 24566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
+|+.++.+|.+.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+++.|.++++.+.+.|+.|+..+++.++.+|+
T Consensus 356 s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~ 435 (857)
T PLN03077 356 SWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435 (857)
T ss_pred eHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
+.|++++|.++|++|.+ +|..+|+.++.+|.+.|+.++|+.+|++|.. ++.||..+|+.++.+|++.|+++.+.+
T Consensus 436 k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~ 510 (857)
T PLN03077 436 KCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKE 510 (857)
T ss_pred HcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHH
Confidence 66666666666666643 3555666666666666666666666666654 355666655555555555555555555
Q ss_pred HHHHHHhCCCC------------------------------CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 505 LLNQMWLHNLE------------------------------PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 505 ~~~~~~~~~~~------------------------------p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
++..+.+.|+. ||..+|+.++.+|++.|+.++|.++|++|.+.|+.||..
T Consensus 511 i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~ 590 (857)
T PLN03077 511 IHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV 590 (857)
T ss_pred HHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc
Confidence 55555544444 455555555555555555555555565555555555555
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCcccchhhhhH------------HHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMV-EKGFEISIRDYTKS------------FFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
||..++.+|.+.|++++|.++|+.|. +.++.|+..+|..+ ...+....++.|+..+|..|+.+|..+
T Consensus 591 T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~ 670 (857)
T PLN03077 591 TFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIH 670 (857)
T ss_pred cHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Confidence 55555555555566666666665555 45555555555422 122233334455555555555555555
Q ss_pred CCHHHHHHHHHHHHh
Q 006396 622 GDLGSVFELAAVMIK 636 (647)
Q Consensus 622 g~~~~A~~~~~~~~~ 636 (647)
|+.+.|....+++.+
T Consensus 671 ~~~e~~e~~a~~l~~ 685 (857)
T PLN03077 671 RHVELGELAAQHIFE 685 (857)
T ss_pred CChHHHHHHHHHHHh
Confidence 555555555555554
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-68 Score=549.18 Aligned_cols=546 Identities=17% Similarity=0.227 Sum_probs=461.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCC-CcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEF-GPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
++...|..+...+++.|++++|+++|++|...++ .++..++..++..|.+.|..++|..+|+.|.. |+..+|+.+
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L 443 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML 443 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence 4566778888888888888899999988888775 34566677788888888888888888888863 788888888
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+.+|++.|+++.|.++|+.|.+.|+.||..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++
T Consensus 444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~ 523 (1060)
T PLN03218 444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV 523 (1060)
T ss_pred HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence 88888888888898999888888888888889999999988889989999999888888888888899889988888999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH--CCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA--VGLKPDLVTYSILIRGLCKQDKVHKAIQLYN 297 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (647)
++|.++|+.|.+.|+.||..+|+.++.+|++.|++++|.++|++|.. .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus 524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 89998888888888888888899999999888888889998888876 5778888888889888888898888999998
Q ss_pred HHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006396 298 EMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS 377 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 377 (647)
.|.+.++.|+..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++++.|.+.|+.|+
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd 683 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
..+|+.++.+|++.|++++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.+
T Consensus 684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a 763 (1060)
T PLN03218 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA 763 (1060)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
|++.|++++|.++++.|.+.|+.||..+|+.++..|. +.+++|..+.+.+...+ + +......+..+.|
T Consensus 764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~A 831 (1060)
T PLN03218 764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVSFD--S--------GRPQIENKWTSWA 831 (1060)
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhhhh--c--------cccccccchHHHH
Confidence 8888888888888888888888888888888886554 24566655544443311 0 1111122345679
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
..+|++|.+.|+.||..+|..++.+++..+..+.+..+++.+...+ .+|+..+|+.++.+
T Consensus 832 l~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~--------------------~~~~~~~y~~Li~g 891 (1060)
T PLN03218 832 LMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISA--------------------DSQKQSNLSTLVDG 891 (1060)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCC--------------------CCcchhhhHHHHHh
Confidence 9999999999999999999999988888888888888888776555 58889999999998
Q ss_pred HHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 618 FHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
+.+. .++|..++++|.+.|+.|+..
T Consensus 892 ~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 892 FGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred hccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 8432 368999999999999999875
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-67 Score=542.98 Aligned_cols=544 Identities=18% Similarity=0.244 Sum_probs=483.2
Q ss_pred CcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCC-CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHH
Q 006396 28 KVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSET-PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNA 103 (647)
Q Consensus 28 ~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 103 (647)
.++...+..++. +.|++++|+++|+.|...+. +++...+..++..|.+.|..++|..+|+.|.. |+..+|+.
T Consensus 367 ~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~ 442 (1060)
T PLN03218 367 KRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNM 442 (1060)
T ss_pred CCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHH
Confidence 345555555555 77999999999999998775 45666777889999999999999999999874 89999999
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 006396 104 IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ 183 (647)
Q Consensus 104 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (647)
++.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|+
T Consensus 443 LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 443 LMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh--CCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 184 ISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS--QGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 184 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+++|.++|+.|...|+.||..+|+.++.+|++.|++++|.++|+.|.. .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999986 578999999999999999999999999999
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQ 341 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 341 (647)
++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|..++.+|++.|++++|.++++.+.+.+..|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+..+|+.++.+|++.|++++|.++|++|.+.++.|+..+|+.++.+|++.|++++|.++|++|...|+.||..+|+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 501 (647)
+|++.|+++.|..+|++|.+.|+.||..+|+.++..|.+ +++++..+.+.+.... + .......+..+.
T Consensus 763 a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~--~y~ka~~l~~~v~~f~--~--------g~~~~~n~w~~~ 830 (1060)
T PLN03218 763 ASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR--RFEKACALGEPVVSFD--S--------GRPQIENKWTSW 830 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--HHHHHhhhhhhhhhhh--c--------cccccccchHHH
Confidence 999999999999999999999999999999999876542 4555555544433211 0 001111223456
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 502 AFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 502 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
|..+|++|.+.|+.||..+|+.++.++...+....+..+++.|...+..|+..+|+.++.++.+. .++|..++++|..
T Consensus 831 Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~ 908 (1060)
T PLN03218 831 ALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAAS 908 (1060)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHH
Confidence 88888888888888888888888877777777777777777777666677777888888876322 3578888888888
Q ss_pred cCCcccch
Q 006396 582 KGFEISIR 589 (647)
Q Consensus 582 ~~~~~~~~ 589 (647)
.|+.|+..
T Consensus 909 ~Gi~p~~~ 916 (1060)
T PLN03218 909 LGVVPSVS 916 (1060)
T ss_pred cCCCCCcc
Confidence 88877764
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-61 Score=500.04 Aligned_cols=473 Identities=18% Similarity=0.258 Sum_probs=290.4
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG-LHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILA 175 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 175 (647)
+...|+.++..+.+.|++++|.++|+.|...+ ..|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.++
T Consensus 86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li 165 (697)
T PLN03081 86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL 165 (697)
T ss_pred CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence 34456666777777777777777777666543 45666677777777777777777777777776666666777777777
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
.+|.+.|+++.|.++|++|. .||..+|+.++.+|++.|++++|.++|++|.+.|..|+..+|+.++.+|.+.|..+
T Consensus 166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 77777777777777776664 35666677777777666777777777776666666666666666666666666666
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH
Q 006396 256 EALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI 335 (647)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 335 (647)
.+.+++..+.+.|+.||..+|+.++.+|++.|++++|.++|++|..
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---------------------------------- 287 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---------------------------------- 287 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----------------------------------
Confidence 6666666666666666666666666666666666666666666532
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006396 336 MSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVT 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (647)
+|..+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+
T Consensus 288 -----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~ 362 (697)
T PLN03081 288 -----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVA 362 (697)
T ss_pred -----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeee
Confidence 244455555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
++.++.+|++.|++++|.++|++|. .||..+|+.+|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+
T Consensus 363 ~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~ 438 (697)
T PLN03081 363 NTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRY 438 (697)
T ss_pred hHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhc
Confidence 5555555555555555555555554 245555555555555555555555555555555555555555555555555
Q ss_pred cCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWL-HNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++++|.++++++ +..|+..+|..++.+|...|+++.|..
T Consensus 439 ~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~ 515 (697)
T PLN03081 439 SGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRL 515 (697)
T ss_pred CCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 5555555555555554 455555555555555555555555555555443 245555555555555555555555555
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+++++.+.+ |.+...|..++..|.+.|++++|.++++.|.+.|+.
T Consensus 516 ~~~~l~~~~---------------------p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 516 AAEKLYGMG---------------------PEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHhCCC---------------------CCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 555555433 334455555555555556666666555555555554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-61 Score=497.60 Aligned_cols=512 Identities=17% Similarity=0.297 Sum_probs=468.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE-FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
.+...|+.++..+.+.|++++|+.+|+.|...+ +.|+..+|+.++.+|.+.++++.+.+++..|.+.|+.||..+|+.+
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~L 164 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRV 164 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHH
Confidence 345589999999999999999999999998754 6789999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+.+|++.|++++|.++|++| ..||..+|+.++.+|.+.|++++|.++|++|.+.|+.|+..+|..++.+++..|+.
T Consensus 165 i~~y~k~g~~~~A~~lf~~m----~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~ 240 (697)
T PLN03081 165 LLMHVKCGMLIDARRLFDEM----PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240 (697)
T ss_pred HHHHhcCCCHHHHHHHHhcC----CCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcH
Confidence 99999999999999999999 56899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
+.+.+++..+.+.|+.+|..+++.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|
T Consensus 241 ~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M 316 (697)
T PLN03081 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEM 316 (697)
T ss_pred HHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999997 469999999999999999999999999999
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
.+.|+.||..|+..++.+|++.|.+++|.+++..+.+.+..+|..+++.++.+|++.|++++|.++|++|.+ ||..
T Consensus 317 ~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~ 392 (697)
T PLN03081 317 RDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLI 392 (697)
T ss_pred HHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCee
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864 6899
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMET-KAIGPTHVTYTVVIKGL 458 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 458 (647)
+|+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|..++|.++|+.|.+ .|+.|+..+|+.++.+|
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l 472 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL 472 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999976 58999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A 537 (647)
++.|++++|.+++++| ++.|+..+|+.++.+|...|+++.|..+++++.+ +.| +..+|..|+..|++.|++++|
T Consensus 473 ~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 473 GREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred HhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHH
Confidence 9999999999998765 5789999999999999999999999999999976 556 478999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHH-HHHHHH---HHHH--------hcCCHHHHHHHHHHHHHcCCcccch
Q 006396 538 DCLLVSLQEHNISLTKV-AYTTII---KAHC--------AEGDVHKAMTFFCQMVEKGFEISIR 589 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~-~~~~l~---~~~~--------~~g~~~~A~~~~~~~~~~~~~~~~~ 589 (647)
.++++.|.+.|+...+. +|..+. ..+. ...-++...++..+|.+.|+.|+..
T Consensus 548 ~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~ 611 (697)
T PLN03081 548 AKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN 611 (697)
T ss_pred HHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence 99999999998764433 332211 0000 0012345566777788888777644
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-40 Score=360.98 Aligned_cols=559 Identities=13% Similarity=0.088 Sum_probs=348.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|+++.|...++.+....+ .++..+..++..+...|++++|...|+++....+ .+...+..+...+...|++++|..
T Consensus 341 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~ 418 (899)
T TIGR02917 341 RLGRVDEAIATLSPALGLDP-DDPAALSLLGEAYLALGDFEKAAEYLAKATELDP-ENAAARTQLGISKLSQGDPSEAIA 418 (899)
T ss_pred HCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCChHHHHH
Confidence 44555555555555444322 3444455555555555555555555555544322 133444455555555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
.++.+.+.. +........++..+.+.|++++|.++++.+... .+.+..++..+..++...|++++|.+.|+++.....
T Consensus 419 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 496 (899)
T TIGR02917 419 DLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEP 496 (899)
T ss_pred HHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC
Confidence 555555442 122233344445555555555665555555543 234555666666666666666666666666655421
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHH
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSIL 279 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 279 (647)
.+...+..+...+...|++++|.+.++.+...+. .+..++..+...+.+.|+.++|...++++...+ +.+...+..+
T Consensus 497 -~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 573 (899)
T TIGR02917 497 -DFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALAL 573 (899)
T ss_pred -CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHH
Confidence 1334455555666666666666666666665432 244556666666666666666666666665543 2244455566
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (647)
+..+...|++++|..+++.+.... +.+...+..+...+...|++++|...++.+.... +.+...+..+..++...|++
T Consensus 574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence 666666666666666666665542 3445556666666666777777777776666543 33455566666666667777
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEM 439 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 439 (647)
++|...++++.+..+ .+..++..++..+...|++++|..+++.+.... +.+...+..+...+...|++++|...|+.+
T Consensus 652 ~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 652 AKAITSLKRALELKP-DNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777776665432 245566666666677777777777777666553 445556666666777777777777777776
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 440 ETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 440 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
...+ |+..++..++.++...|++++|.+.++.+.+.. +.+...+..+...|...|++++|...|+++.+.. ++++.
T Consensus 730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~ 805 (899)
T TIGR02917 730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAV 805 (899)
T ss_pred HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHH
Confidence 6653 444556666677777777777777777776653 5566667777777777777777777777777642 34566
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhh
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (647)
.++.++..+...|+ .+|+.+++++.+.. +.+..++..++.++...|++++|..+++++++.+
T Consensus 806 ~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---------------- 867 (899)
T TIGR02917 806 VLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA---------------- 867 (899)
T ss_pred HHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----------------
Confidence 77777777777777 66777777777642 3345566677777777777777777777777766
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 600 LSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
|.++.++..++.++.+.|++++|.+++++|++
T Consensus 868 -----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 868 -----PEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 66899999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-39 Score=350.48 Aligned_cols=621 Identities=14% Similarity=0.062 Sum_probs=364.6
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRL 79 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 79 (647)
++.++...|++++|...++++.+..+. +....+...+. ..|+++.|...|+.+....+ .+...+..++..+...|++
T Consensus 233 ~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~ 311 (899)
T TIGR02917 233 LATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNL 311 (899)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCH
Confidence 456677788888888888887776432 22222223333 66777777777777766443 3344555566667777777
Q ss_pred hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 80 QDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
++|...|+++....+ .+...+..++..+.+.|++++|...++.+.+.. +.+...+..+...+.+.|++++|.++|+++
T Consensus 312 ~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 389 (899)
T TIGR02917 312 EQAYQYLNQILKYAP-NSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAAEYLAKA 389 (899)
T ss_pred HHHHHHHHHHHHhCC-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777777766432 244556666667777777777777777776654 445566666777777777777777777776
Q ss_pred hhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcc
Q 006396 160 GRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI 239 (647)
Q Consensus 160 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 239 (647)
.+.. +.+...+..+...+...|++++|.+.++.+...... .......++..+.+.|++++|.++++.+.... +.+..
T Consensus 390 ~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 466 (899)
T TIGR02917 390 TELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQLDPE-LGRADLLLILSYLRSGQFDKALAAAKKLEKKQ-PDNAS 466 (899)
T ss_pred HhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCc-chhhHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCcH
Confidence 6642 334555666666666677777777777666654322 22334445556666666666666666665542 23455
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 006396 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLC 319 (647)
Q Consensus 240 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (647)
++..+...+...|++++|.+.|+++.+.. +.+...+..+...+...|++++|.+.++++.... +.+..++..+...+.
T Consensus 467 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 544 (899)
T TIGR02917 467 LHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYL 544 (899)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence 56666666666666666666666665542 2234445555566666666666666666665542 233444555555555
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHH
Q 006396 320 EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARR 399 (647)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 399 (647)
..|+.++|...++.+...+ +.+...+..++..+...|++++|..+++.+.+.. +.+...+..+..++...|++++|..
T Consensus 545 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 622 (899)
T TIGR02917 545 RTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVS 622 (899)
T ss_pred HcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 6666666666666655443 2344445555556666666666666666655432 2244555555666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 400 LLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 479 (647)
.++.+.+.. +.+...+..+..++...|++++|...++.+.+.. +.+..++..++..+...|++++|..+++.+.+.+
T Consensus 623 ~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~- 699 (899)
T TIGR02917 623 SFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH- 699 (899)
T ss_pred HHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-
Confidence 666555432 3344455555555666666666666666555442 3334555555555566666666666666555543
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
+.+...+..+...+...|++++|...++.+... .|+..++..++.++...|++++|.+.++++.+.. +.+..++..+
T Consensus 700 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~l 776 (899)
T TIGR02917 700 PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTAL 776 (899)
T ss_pred cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 344455555555555566666666666655552 3333445555555555666666666665555532 3344455555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH--------------HHhhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF--------------FCMMLSNGFPPDQEICEVMLIAFHQGGDLG 625 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (647)
+..|...|++++|...|+++++... .+...+.... +...... .|.++..+..++.++...|+++
T Consensus 777 a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~ 854 (899)
T TIGR02917 777 AELYLAQKDYDKAIKHYRTVVKKAP-DNAVVLNNLAWLYLELKDPRALEYAEKALKL-APNIPAILDTLGWLLVEKGEAD 854 (899)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHH
Confidence 5555556666666666665555431 1111111100 0000000 2566788889999999999999
Q ss_pred HHHHHHHHHHhCCCC
Q 006396 626 SVFELAAVMIKSGLL 640 (647)
Q Consensus 626 ~A~~~~~~~~~~~~~ 640 (647)
+|.++++++++.++.
T Consensus 855 ~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 855 RALPLLRKAVNIAPE 869 (899)
T ss_pred HHHHHHHHHHhhCCC
Confidence 999999999998764
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-30 Score=284.53 Aligned_cols=605 Identities=14% Similarity=0.029 Sum_probs=396.1
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCccc---------------
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYT--------------- 65 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~--------------- 65 (647)
++.+...++.+.|.+.+++++...+. |+.......+. ..|+.++|.+.++++....| .++..
T Consensus 35 ~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P-~~~~~~~~~~~~~~~~~~~~ 113 (1157)
T PRK11447 35 VRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAP-DSNAYRSSRTTMLLSTPEGR 113 (1157)
T ss_pred HHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHhcCCchh
Confidence 56677888888888888888877532 22222222222 77888888888888877554 33332
Q ss_pred -HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 66 -NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 66 -~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
...++..+...|++++|+..|+.+....++ +.. ............|+.++|+..++++.+.. +.+...+..+...+
T Consensus 114 ~~l~~A~ll~~~g~~~eA~~~~~~~l~~~p~-~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll 191 (1157)
T PRK11447 114 QALQQARLLATTGRTEEALASYDKLFNGAPP-ELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLL 191 (1157)
T ss_pred hHHHHHHHHHhCCCHHHHHHHHHHHccCCCC-ChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 234455677888888888888888765433 322 11112222234588888888888888774 44566777777888
Q ss_pred HhcCCHHHHHHHHHHHhhCCCC----------------CChh---hH---------------------------------
Q 006396 144 CIAGSMEEALEFTNDMGRHGVE----------------PDAI---TY--------------------------------- 171 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~----------------~~~~---~~--------------------------------- 171 (647)
...|++++|++.++++.+.... ++.. .+
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 8888888888888877543110 0000 00
Q ss_pred -HHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc-ccH--------
Q 006396 172 -SILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV-IAY-------- 241 (647)
Q Consensus 172 -~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-------- 241 (647)
......+...|++++|...|++.++..+. +...+..+...+.+.|++++|...|++..+....... ..+
T Consensus 272 ~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~ 350 (1157)
T PRK11447 272 ARAQGLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNR 350 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhh
Confidence 01123344566677777777776665221 4556666666777777777777777776665322111 111
Q ss_pred ----HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 242 ----SVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 242 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
......+.+.|++++|...|+++.... +.+...+..+...+...|++++|++.|+++.+.. +.+...+..+...
T Consensus 351 ~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l 428 (1157)
T PRK11447 351 YWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 112334556677777777777766652 2244455566666777777777777777766542 2223334444444
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCC--------CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCI--------QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFC 389 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 389 (647)
+. .++.++|..+++.+...... .....+..+...+...|++++|+..|++.++..+. +...+..+...+.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 42 34566666666544321100 01122344556677788888888888888876433 5566677788888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---------HHHHHHHHHHh
Q 006396 390 KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV---------TYTVVIKGLCK 460 (647)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---------~~~~l~~~~~~ 460 (647)
..|++++|...++++.... +.+...+..+...+...+++++|...++.+......++.. .+......+..
T Consensus 507 ~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~ 585 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRD 585 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888888888888887643 3345555555555667888888888887765432222211 12344566778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.|+.++|..+++. .+.+...+..+...+.+.|++++|+..|+++++. .| +...+..++.+|...|++++|++
T Consensus 586 ~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--~P~~~~a~~~la~~~~~~g~~~eA~~ 658 (1157)
T PRK11447 586 SGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR--EPGNADARLGLIEVDIAQGDLAAARA 658 (1157)
T ss_pred CCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 8999999988872 3566677788899999999999999999999984 45 68899999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC---CHHHHHHHHH
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP---DQEICEVMLI 616 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~ 616 (647)
.++.+.+.. +.+..++..++.++...|++++|.+++++++...-. .+| +...+..++.
T Consensus 659 ~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~------------------~~~~~~~a~~~~~~a~ 719 (1157)
T PRK11447 659 QLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS------------------QPPSMESALVLRDAAR 719 (1157)
T ss_pred HHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc------------------CCcchhhHHHHHHHHH
Confidence 999988742 335567788889999999999999999999875400 122 2356777899
Q ss_pred HHHcCCCHHHHHHHHHHHHh-CCCCCC
Q 006396 617 AFHQGGDLGSVFELAAVMIK-SGLLPD 642 (647)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~-~~~~~~ 642 (647)
.+...|++++|++.+++++. .++.|.
T Consensus 720 ~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 720 FEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 99999999999999999863 445443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-28 Score=266.34 Aligned_cols=563 Identities=12% Similarity=0.024 Sum_probs=363.8
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh----------------HHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS----------------LNA 103 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~----------------~~~ 103 (647)
..++.+.|.+.++++....+ .++..+..++..+...|+.++|...++++.+..+. +... ...
T Consensus 40 ~~~~~d~a~~~l~kl~~~~p-~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~-~~~~~~~~~~~~~~~~~~~~~l~ 117 (1157)
T PRK11447 40 ATHREDLVRQSLYRLELIDP-NNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPD-SNAYRSSRTTMLLSTPEGRQALQ 117 (1157)
T ss_pred hhCChHHHHHHHHHHHccCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHhcCCchhhHHH
Confidence 78899999999999998766 78999999999999999999999999999887643 3222 244
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcC
Q 006396 104 IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFS-YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 104 ~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 182 (647)
.+..+.+.|++++|.+.|+++.+.+ +|+... ...+.......|+.++|.+.++++.+.. +.+...+..+...+...|
T Consensus 118 ~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ll~~~g 195 (1157)
T PRK11447 118 QARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLALLLFSSG 195 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHccC
Confidence 4557889999999999999999764 444321 1112222234699999999999999873 557788889999999999
Q ss_pred ChhhHHHHHHHHHhcCCC----------------CCcc---hHH----------------------------------HH
Q 006396 183 QISGAWKVIQKLLIKGSD----------------PDIV---TYT----------------------------------VL 209 (647)
Q Consensus 183 ~~~~a~~~~~~~~~~~~~----------------~~~~---~~~----------------------------------~l 209 (647)
+.++|++.++++...... ++.. .+. ..
T Consensus 196 ~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~ 275 (1157)
T PRK11447 196 RRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQ 275 (1157)
T ss_pred CHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHH
Confidence 999999999988653210 0000 000 01
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHhhH------------
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKP-DLVTY------------ 276 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~------------ 276 (647)
...+...|++++|...|++..+.... +...+..+..++.+.|++++|+..|++..+..... ....|
T Consensus 276 G~~~~~~g~~~~A~~~l~~aL~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~ 354 (1157)
T PRK11447 276 GLAAVDSGQGGKAIPELQQAVRANPK-DSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL 354 (1157)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence 22334455555555555555554321 44455555555555555555555555555432111 00111
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc
Q 006396 277 SILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKL 356 (647)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 356 (647)
......+.+.|++++|+..|+++.+.. +.+...+..+...+...|++++|++.|+.+.+.. +.+...+..+...+. .
T Consensus 355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-p~~~~a~~~L~~l~~-~ 431 (1157)
T PRK11447 355 IQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-PGNTNAVRGLANLYR-Q 431 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH-h
Confidence 111233445555555555555555542 2233344445555555555666655555555443 223334444444442 2
Q ss_pred CCHHHHHHHHHHHHHCCCC--------CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 357 GNIGEAVQLYRQLIEKRIS--------PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
++.++|...++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|+
T Consensus 432 ~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~ 510 (1157)
T PRK11447 432 QSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQ 510 (1157)
T ss_pred cCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 3455555555443221000 001123334455566777777777777776653 3345556666777777777
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHhcCCH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---------ITYNTIIRSFCKCKDL 499 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~ 499 (647)
+++|...++.+.+.. +.+...+..+...+...++.++|+..++.+......++. ..+......+...|+.
T Consensus 511 ~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~ 589 (1157)
T PRK11447 511 RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKE 589 (1157)
T ss_pred HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCH
Confidence 777777777766542 223334444444455667777777777665432111111 1122445667778888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
++|..+++. .++++..+..+...+.+.|++++|+..|+++++.. +.+...+..++.++...|++++|++.++++
T Consensus 590 ~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~l 663 (1157)
T PRK11447 590 AEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKL 663 (1157)
T ss_pred HHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 888888772 24466777889999999999999999999999863 456778999999999999999999999988
Q ss_pred HHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 580 VEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.+.. |.+..++..++.++.+.|++++|.+.++++++..+
T Consensus 664 l~~~---------------------p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~ 702 (1157)
T PRK11447 664 PATA---------------------NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAK 702 (1157)
T ss_pred hccC---------------------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCc
Confidence 8765 66788889999999999999999999999987644
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-26 Score=239.04 Aligned_cols=577 Identities=11% Similarity=-0.010 Sum_probs=366.4
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLY----NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
+...|++++|...|+++++.+ |+.......+. ..|++++|+..++++...++ .|...+..++.. +++.+
T Consensus 54 ~~~~Gd~~~A~~~l~~Al~~d--P~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP-~n~~~~~~La~i----~~~~k 126 (987)
T PRK09782 54 AQKNNDEATAIREFEYIHQQV--PDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHP-GDARLERSLAAI----PVEVK 126 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHh----ccChh
Confidence 344477777777777777764 33332333332 66777777777777766443 444444443222 67777
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHH--------HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH-HHHHHhcCCHHHH
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSR--------YCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL-IHGLCIAGSMEEA 152 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a 152 (647)
|..+|+++....+. +..++..+... |.+.+....++. .......|++.+.... ...|.+.+++++|
T Consensus 127 A~~~ye~l~~~~P~-n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~A 201 (987)
T PRK09782 127 SVTTVEELLAQQKA-CDAVPTLRCRSEVGQNALRLAQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQA 201 (987)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHhhccchhhhhhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHH
Confidence 77777777665433 33344444443 444433333333 2222112334433333 6667777777777
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHL-LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
+++++++.+.+ +.+......|..+|.. .++ +.+..+++.. .+-+...+..++..+.+.|+.++|.++++.+..
T Consensus 202 i~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~ 275 (987)
T PRK09782 202 DTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKP 275 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcc
Confidence 77777777664 3344445556566665 244 5555554421 223556666777777777777777777666544
Q ss_pred CCCC-cCcccHHHH------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH
Q 006396 232 QGFK-LNVIAYSVL------------------------------LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILI 280 (647)
Q Consensus 232 ~~~~-~~~~~~~~l------------------------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 280 (647)
.... |...++..+ +..+.+.++++.+.++. ++.|.... ..+
T Consensus 276 ~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~ 347 (987)
T PRK09782 276 LFTTDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEE 347 (987)
T ss_pred cccCCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHH
Confidence 3211 222222111 22223333333222221 11222222 122
Q ss_pred HHHH--ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhc
Q 006396 281 RGLC--KQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSN--CIQDVVLYNIMIDGYVKL 356 (647)
Q Consensus 281 ~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~ 356 (647)
+.+. ..+...++...+..|.+. .+-+......+.....+.|+.++|.+++....... ...+.....-++..|.+.
T Consensus 348 r~~~~~~~~~~~~~~~~~~~~y~~-~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~ 426 (987)
T PRK09782 348 RYAVSVATRNKAEALRLARLLYQQ-EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESH 426 (987)
T ss_pred HHhhccccCchhHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhC
Confidence 2221 224444555555555543 13355555566666778899999999999887631 233455566777777777
Q ss_pred CC---HHHHHHH----------------------HHHHHHC-CC-CC--CccchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006396 357 GN---IGEAVQL----------------------YRQLIEK-RI-SP--SIVTFNSLIYGFCKNGKVADARRLLDTIKLH 407 (647)
Q Consensus 357 ~~---~~~a~~~----------------------~~~~~~~-~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (647)
+. ..++..+ +...... +. ++ +...+..+..++.. ++.++|...+......
T Consensus 427 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~ 505 (987)
T PRK09782 427 PYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR 505 (987)
T ss_pred CcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh
Confidence 65 3333222 1111111 11 23 45566777777665 7888899988877765
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
.|+......+...+...|++++|...|+.+... +|+...+..+...+.+.|++++|...+++..+.. +.+...+.
T Consensus 506 --~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~ 580 (987)
T PRK09782 506 --QPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYW 580 (987)
T ss_pred --CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHH
Confidence 466554444555567899999999999998664 4555566677788889999999999999998864 33444444
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+.......|++++|...+++.++ ..|+...+..+..++.+.|++++|+..++++.+.. +.+...+..+..++...|
T Consensus 581 ~La~~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G 657 (987)
T PRK09782 581 WLHAQRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSG 657 (987)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCC
Confidence 444455566999999999999998 56788899999999999999999999999999853 445668889999999999
Q ss_pred CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 568 DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++|+..++++++.. |.++.++..++.++...|++++|+..++++++..+
T Consensus 658 ~~eeAi~~l~~AL~l~---------------------P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 658 DIAQSREMLERAHKGL---------------------PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred CHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999987 78899999999999999999999999999998664
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.8e-25 Score=227.27 Aligned_cols=585 Identities=13% Similarity=0.023 Sum_probs=427.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHH--------H
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDG--------L 73 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~ 73 (647)
|+.+|.+.|++++|+..++++.+.+ |+...+..++...++++.|...++++....| .+...+..++.. |
T Consensus 84 LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i~~~~kA~~~ye~l~~~~P-~n~~~~~~la~~~~~~~~l~y 160 (987)
T PRK09782 84 LAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAIPVEVKSVTTVEELLAQQK-ACDAVPTLRCRSEVGQNALRL 160 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHhccChhHHHHHHHHHHhCC-CChhHHHHHHHHhhccchhhh
Confidence 7899999999999999999999985 6767677767777999999999999998665 666777777666 6
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHH-HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAI-MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI-AGSMEE 151 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 151 (647)
.+.++..+++. .....+.|++.+.... ...|.+.|++++|+.++.++.+.+ +.+......+..+|.. .++ ++
T Consensus 161 ~q~eqAl~AL~----lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~ 234 (987)
T PRK09782 161 AQLPVARAQLN----DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQN-TLSAAERRQWFDVLLAGQLD-DR 234 (987)
T ss_pred hhHHHHHHHHH----HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HH
Confidence 65544444544 2222344455545544 899999999999999999999986 5556667777778887 466 77
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCcchHHHH---------------------
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSD-PDIVTYTVL--------------------- 209 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l--------------------- 209 (647)
+..+++.. ++.+...+..++..+.+.|+.++|.++++++...-.. |...++..+
T Consensus 235 a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~ 310 (987)
T PRK09782 235 LLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTVQFAD 310 (987)
T ss_pred HHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhhhhHH
Confidence 77775542 4568889999999999999999999999987654221 333333222
Q ss_pred ---------HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHhhHHH
Q 006396 210 ---------ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS--MCKSGRIDEALGLLYEMEAVGLKPDLVTYSI 278 (647)
Q Consensus 210 ---------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 278 (647)
+..+.+.++++.+.++. +..|.... ..++. ....+...++...++.|-... +-+......
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~l~q 381 (987)
T PRK09782 311 NRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEM--LEERYAVSVATRNKAEALRLARLLYQQE-PANLTRLDQ 381 (987)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchH--HHHHHhhccccCchhHHHHHHHHHHhcC-CCCHHHHHH
Confidence 33444455555444331 12333332 22222 223466777777777776641 225555556
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhC-C-CCCCcccHHHHHHHHhhcCC---HHHH----------------------HHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEMCSK-R-ISPNSFAHGAILLGLCEKEM---ITEA----------------------RMYF 331 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~a----------------------~~~~ 331 (647)
+.-...+.|+.++|.++|+..... + -.++......++..|.+.+. ..++ ...+
T Consensus 382 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 461 (987)
T PRK09782 382 LTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNC 461 (987)
T ss_pred HHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhH
Confidence 666677899999999999998763 1 11222223355556655544 2222 2222
Q ss_pred HHHHHc-C-CCC--cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 006396 332 DSLIMS-N-CIQ--DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH 407 (647)
Q Consensus 332 ~~~~~~-~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 407 (647)
+.+... + .++ +...+..+..++.. ++.++|...+.+..... |+......+...+...|++++|...++.+...
T Consensus 462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~ 538 (987)
T PRK09782 462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH 538 (987)
T ss_pred HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence 222221 1 134 67778888877776 88989999888887763 44433334455556899999999999998654
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
+|+...+..+..++.+.|++++|...++...+.. +++...+..+.......|++++|...+++..+. .|+...+.
T Consensus 539 --~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~ 613 (987)
T PRK09782 539 --DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYV 613 (987)
T ss_pred --CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHH
Confidence 4555566777888899999999999999998764 333333334444455669999999999999985 46788899
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+..++.+.|++++|...+++++. ..| +...++.+..++...|++++|+..++++.+.. |.+...+..++.++...
T Consensus 614 ~LA~~l~~lG~~deA~~~l~~AL~--l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~l 690 (987)
T PRK09782 614 ARATIYRQRHNVPAAVSDLRAALE--LEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRL 690 (987)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHC
Confidence 999999999999999999999999 455 58889999999999999999999999999853 44667899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|++++|+..++++++.. |.+..+....+....+..+++.|.+.+++....++.
T Consensus 691 Gd~~eA~~~l~~Al~l~---------------------P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~ 743 (987)
T PRK09782 691 DDMAATQHYARLVIDDI---------------------DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD 743 (987)
T ss_pred CCHHHHHHHHHHHHhcC---------------------CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence 99999999999999987 666788889999999999999999999988776543
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-25 Score=214.24 Aligned_cols=575 Identities=13% Similarity=0.071 Sum_probs=432.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFC 122 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~ 122 (647)
+.+.|.+.|..++...+ +|..++..-+......|+|..|+.+|..++...+.--+.....+..++.+.|+.+.|+..|+
T Consensus 145 ~~~~A~a~F~~Vl~~sp-~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 145 SMDDADAQFHFVLKQSP-DNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred cHHHHHHHHHHHHhhCC-cchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 36999999999987554 67666666667777899999999999998765444333445566778889999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 123 LMLKYGLHPDAFSYNILIHGLCI---AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
++++.+ +.++.++..|...-.. ...+..+..++...-..+ +-++...+.|.+.|...|+++.++.+...+.....
T Consensus 224 ralqLd-p~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLD-PTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcC-hhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 999874 3333344433332222 334667778777776653 45788899999999999999999999999887632
Q ss_pred C--CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 006396 200 D--PDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYS 277 (647)
Q Consensus 200 ~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (647)
. .-...|-.+.++|-..|++++|...|....+.........+..+.+.+...|+++.+...|+.+.... +.+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 1 12345788899999999999999999998887433224456678999999999999999999998762 33456667
Q ss_pred HHHHHHHccC----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH----HcCCCCcHHHHHHH
Q 006396 278 ILIRGLCKQD----KVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI----MSNCIQDVVLYNIM 349 (647)
Q Consensus 278 ~l~~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 349 (647)
.+...|...+ ..+.|..++.+..+.. +.|...|..+...+.....+.. +..|..+. ..+..+.+...|.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777664 4677777887777653 4456666666666655554444 66665543 44556788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC---CCCCCc------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEK---RISPSI------VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS-AVTYTTF 419 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l 419 (647)
...+...|+++.|...|...... ...++. .+-..+..+.-..++.+.|.+.|..+... .|+ +..|..+
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylRl 536 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLRL 536 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHHh
Confidence 99999999999999999988765 122232 12334556666778999999999999876 344 3344444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh---
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCK--- 495 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~--- 495 (647)
+......+...+|...++...... ..++..++.+...+.+...+..|.+-|+...+.- ..+|..+..+|.+.|.+
T Consensus 537 ~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~ 615 (1018)
T KOG2002|consen 537 GCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALH 615 (1018)
T ss_pred hHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhc
Confidence 433344577888999999887754 4566677777778888888888888777776642 23677777788876653
Q ss_pred ---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 496 ---------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 496 ---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+..++|+++|.++++.. +.|...-|-++-+++..|++.+|..+|.++.+.. .....+|..++.+|...
T Consensus 616 ~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~ 693 (1018)
T KOG2002|consen 616 NPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQ 693 (1018)
T ss_pred ccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHH
Confidence 345788999999998842 3478888899999999999999999999999863 44667999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKFLI 646 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 646 (647)
|+|-.|++.|+.+.+.-+ -..+.++...|++++.+.|++.+|.+.+..++...|.-..+.+
T Consensus 694 ~qy~~AIqmYe~~lkkf~-------------------~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~F 754 (1018)
T KOG2002|consen 694 GQYRLAIQMYENCLKKFY-------------------KKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKF 754 (1018)
T ss_pred HHHHHHHHHHHHHHHHhc-------------------ccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHh
Confidence 999999999999987651 2457899999999999999999999999999987665554444
Q ss_pred C
Q 006396 647 N 647 (647)
Q Consensus 647 n 647 (647)
|
T Consensus 755 N 755 (1018)
T KOG2002|consen 755 N 755 (1018)
T ss_pred H
Confidence 4
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-24 Score=206.51 Aligned_cols=612 Identities=12% Similarity=0.031 Sum_probs=449.6
Q ss_pred hhhHHHHHHHHHhCCCCcCHH-H--HHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHH
Q 006396 12 VHDAVFVIAKMKELDLKVSIQ-T--YNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQ 87 (647)
Q Consensus 12 ~~~A~~~~~~~~~~~~~~~~~-~--~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 87 (647)
++.|.+.|..+++.. |+.. . ..+-+. +.+++..|+.+|+.++...|...+.....++.++.+.|+.+.|+..|.
T Consensus 146 ~~~A~a~F~~Vl~~s--p~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS--PDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhC--CcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHH
Confidence 489999999999885 3332 1 222222 889999999999998877765666666777888999999999999999
Q ss_pred HhhcCCCCcCHHhHHHHHHHHHhc---CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006396 88 ETAGKEFGPSVVSLNAIMSRYCKL---GFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGV 164 (647)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (647)
++++.+| .+..++..+...-... ..+..+.+++..+-..+ +.|+.+.+.|...|.-.|++..+..+...+.....
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 9998764 2444444444333333 45667888888887765 66888999999999999999999999998876421
Q ss_pred --CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHH
Q 006396 165 --EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242 (647)
Q Consensus 165 --~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (647)
..-...|-.+.++|...|++++|.+.|.+..+....--...+.-+...+...|+++.+...|+.+.+.. +.+..+..
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~ 380 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMK 380 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHH
Confidence 122345788999999999999999999998876332223455668889999999999999999999873 33566777
Q ss_pred HHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHH----hCCCCCCcccHHHH
Q 006396 243 VLLSSMCKSG----RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMC----SKRISPNSFAHGAI 314 (647)
Q Consensus 243 ~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l 314 (647)
.+...|...+ ..+.|..++.+..+.- +.|...|..+...+...+-+.. +..|..+. ..+..+.+...+.+
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNv 458 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNV 458 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhH
Confidence 7777777665 5677888888877653 4477788888777766555444 76665543 45556778889999
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHc---CCCCcH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMS---NCIQDV------VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLI 385 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 385 (647)
.......|++..|...|+..... ...++. .+-..+..+.-..++.+.|.+.|+.++...+. -+..|..++
T Consensus 459 aslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~ 537 (1018)
T KOG2002|consen 459 ASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLG 537 (1018)
T ss_pred HHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhh
Confidence 99999999999999999988765 112222 23344566667788999999999999987432 344455555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----
Q 006396 386 YGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK-AIGPTHVTYTVVIKGLCK---- 460 (647)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~---- 460 (647)
......++..+|...+....... ..++..++.+...+.....+..|.+-|..+.+. ...+|..+.-.|...|..
T Consensus 538 ~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~ 616 (1018)
T KOG2002|consen 538 CMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHN 616 (1018)
T ss_pred HHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcc
Confidence 44445678889999999888753 556667777888899999999998888777654 223677777666665542
Q ss_pred --------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 461 --------QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 461 --------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
.+..++|+++|.+.++.. |-+...-+.+.-.++..|++..|..+|..+.+.. .....+|..++.+|..+|
T Consensus 617 ~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~-~~~~dv~lNlah~~~e~~ 694 (1018)
T KOG2002|consen 617 PSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT-SDFEDVWLNLAHCYVEQG 694 (1018)
T ss_pred cccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHH-hhCCceeeeHHHHHHHHH
Confidence 245678999999988864 6778888889999999999999999999999853 345788999999999999
Q ss_pred ChhhHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH--HHhhh--hCCCCCC
Q 006396 533 DLKNADCLLVSLQEHNI-SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF--FCMML--SNGFPPD 607 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~ 607 (647)
++..|+++|+...+.-. ..+..+...|++++.+.|++.+|.+....+.......+...+...+ +.... ...-++.
T Consensus 695 qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t 774 (1018)
T KOG2002|consen 695 QYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRT 774 (1018)
T ss_pred HHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhccccc
Confidence 99999999999886433 3456789999999999999999999999998876333333332111 11111 1111111
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+=......+..+.|.++|..+...+..
T Consensus 775 ------~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 775 ------LEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 112223345678888888888876654
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-23 Score=191.73 Aligned_cols=431 Identities=15% Similarity=0.119 Sum_probs=312.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 006396 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQI 216 (647)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (647)
..|.+-..+.|++++|++.-...-..+ +.+....-.+-.++.+..+.+.....-....+.. ..-..+|..+...+...
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ker 129 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKER 129 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHHh
Confidence 344455556677777766655444332 2233333334445555555555444333333321 11345677777777777
Q ss_pred CChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHHccCCHHHHHHH
Q 006396 217 GNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTY-SILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 217 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~ 295 (647)
|+++.|+..++.+.+...+ ....|..+..++...|+.+.|...|.+..+. .|+.... ..+.......|+.++|...
T Consensus 130 g~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 130 GQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred chHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHH
Confidence 7777777777777766432 5566777777777777777777777776654 4544432 2333444456777777777
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006396 296 YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRIS 375 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 375 (647)
|.+.++.. +--...|..+...+...|+...|++.|++..+.+ +.-...|-.|...|...+.++.|...|.+.....+.
T Consensus 207 YlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn 284 (966)
T KOG4626|consen 207 YLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPN 284 (966)
T ss_pred HHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCc
Confidence 77666542 2234556667777777777777777777777654 223556778888899999999999999888776433
Q ss_pred CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 376 PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 376 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
....+..+...|..+|..+.|++.|++.++. .|+ ...|+.+..++-..|+..+|.+.+....... +....+.+.|
T Consensus 285 -~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NL 360 (966)
T KOG4626|consen 285 -HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNL 360 (966)
T ss_pred -chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHH
Confidence 4566777778888999999999999998875 444 6789999999999999999999999888753 2334577888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 533 (647)
...+...|.+++|..+|....+.. +.-....+.|...|-++|++++|...++++++ +.|+ ...++.++..|-..|+
T Consensus 361 gni~~E~~~~e~A~~ly~~al~v~-p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~ 437 (966)
T KOG4626|consen 361 GNIYREQGKIEEATRLYLKALEVF-PEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD 437 (966)
T ss_pred HHHHHHhccchHHHHHHHHHHhhC-hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence 999999999999999999988742 33356788999999999999999999999998 7887 7889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 534 LKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.|.+.+.+++.. .|. ...++.++..|-.+|+..+|++.|+.+++..
T Consensus 438 v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk 486 (966)
T KOG4626|consen 438 VSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK 486 (966)
T ss_pred HHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC
Confidence 99999999999984 455 4588999999999999999999999999865
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.2e-23 Score=190.67 Aligned_cols=450 Identities=16% Similarity=0.090 Sum_probs=352.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHh
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHL 180 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 180 (647)
...+..-..+.|++.+|++.-..+-+.+ +.+......+-..+.+..+.+....--....+. .+.-.++|..+...+-.
T Consensus 51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence 5566677778899999988877776664 333333344445566666666655544444443 34456788888999999
Q ss_pred cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc-ccHHHHHHHHHhcCChhHHHH
Q 006396 181 LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNV-IAYSVLLSSMCKSGRIDEALG 259 (647)
Q Consensus 181 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~ 259 (647)
.|+++.|+..++.+++...+ ....|..+..++...|+.+.|.+.|...++.+ |+. .....+...+-..|++++|..
T Consensus 129 rg~~~~al~~y~~aiel~p~-fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnLlka~Grl~ea~~ 205 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNLLKAEGRLEEAKA 205 (966)
T ss_pred hchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHHHHhhcccchhHH
Confidence 99999999999998886332 46788888889999999999999988888763 332 234445566667888999988
Q ss_pred HHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcC
Q 006396 260 LLYEMEAVGLKPD-LVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSN 338 (647)
Q Consensus 260 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 338 (647)
.+.+..+. .|. ...|..|.-.+-..|+...|+..|++.++.+ +.-...|..+...|...+.++.|...+.......
T Consensus 206 cYlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr 282 (966)
T KOG4626|consen 206 CYLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR 282 (966)
T ss_pred HHHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence 88887765 333 4568888888888899999999999988752 2235678888888888999999998888887654
Q ss_pred CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 339 CIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 339 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
+.....+..+...|...|..+.|+..|++.++..+. -+..|+.+..++...|++.+|.+.|.+..... +......+.
T Consensus 283 -pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~N 359 (966)
T KOG4626|consen 283 -PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNN 359 (966)
T ss_pred -CcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHH
Confidence 345667778888899999999999999999987433 46789999999999999999999999998763 445678899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006396 419 FMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-QITYNTIIRSFCKC 496 (647)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 496 (647)
+...|...|.++.|..+|....+- .|. ....+.|...|-++|++++|+..+++.+. +.|+ ...++.+...|-..
T Consensus 360 Lgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 360 LGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence 999999999999999999988775 343 45688899999999999999999999987 4555 46889999999999
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDV 569 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~ 569 (647)
|+.+.|.+.+.+++. +.|. ...++.|...|...|+..+|++-|++.++ ++||.. .+..++.++---.+|
T Consensus 436 g~v~~A~q~y~rAI~--~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw 506 (966)
T KOG4626|consen 436 GDVSAAIQCYTRAIQ--INPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDW 506 (966)
T ss_pred hhHHHHHHHHHHHHh--cCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhcc
Confidence 999999999999998 6676 78899999999999999999999999998 677754 666666554433333
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-18 Score=161.37 Aligned_cols=585 Identities=12% Similarity=-0.013 Sum_probs=437.6
Q ss_pred cCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 9 TGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFL 86 (647)
Q Consensus 9 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 86 (647)
.++..+|+.+++..++.+++ |+.-...+.+- ..|.+..|+.+...--+ ..+.+.+.|..-++ ....+.|..+.
T Consensus 264 l~DikKaR~llKSvretnP~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe-~cprSeDvWLeaiR----Lhp~d~aK~vv 338 (913)
T KOG0495|consen 264 LEDIKKARLLLKSVRETNPKHPPGWIASARLEEVAGKLSVARNLIMKGCE-ECPRSEDVWLEAIR----LHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHhhHHHHHHHHHHHHHh-hCCchHHHHHHHHh----cCChHHHHHHH
Confidence 35667888888888888753 44333344444 56677777666554333 12244444443222 22333444444
Q ss_pred HHhhcCCCCcCHHhHHH---------------------------HHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 87 QETAGKEFGPSVVSLNA---------------------------IMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 87 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
..+.+..+ .++..|.. +..+.....+.+.|+-++.++.+.= +.....|
T Consensus 339 A~Avr~~P-~Sv~lW~kA~dLE~~~~~K~RVlRKALe~iP~sv~LWKaAVelE~~~darilL~rAvecc-p~s~dLw--- 413 (913)
T KOG0495|consen 339 ANAVRFLP-TSVRLWLKAADLESDTKNKKRVLRKALEHIPRSVRLWKAAVELEEPEDARILLERAVECC-PQSMDLW--- 413 (913)
T ss_pred HHHHHhCC-CChhhhhhHHhhhhHHHHHHHHHHHHHHhCCchHHHHHHHHhccChHHHHHHHHHHHHhc-cchHHHH---
Confidence 44333211 12222211 1222333445555666666666541 2223333
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHH----hcCCCCCcchHHHHHHHHHh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLL----IKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~ 215 (647)
-+|.+...|+.|.++++...+. ++.+...|.+-...-..+|+.+...+++.+-+ ..|+..+...|..=...|-.
T Consensus 414 -lAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 414 -LALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 3455667789999999999887 88899999998888889999999988887654 45888888888888888989
Q ss_pred cCChHHHHHHHHHHHhCCCCc--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKL--NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAI 293 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 293 (647)
.|..-.+..+....+..|+.. -..+|..-.+.|.+.+.++-|+.+|....+. .+.+...|......--..|..+...
T Consensus 492 agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~ 570 (913)
T KOG0495|consen 492 AGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLE 570 (913)
T ss_pred cCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHH
Confidence 999999999999988887542 3457888899999999999999999998875 2345667777777777789999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKR 373 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 373 (647)
.+|++++.. ++.....+......+-..|+...|+.++....... +.+...|-+.+.......+++.|..+|.+....
T Consensus 571 Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~- 647 (913)
T KOG0495|consen 571 ALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI- 647 (913)
T ss_pred HHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc-
Confidence 999999886 23344445556667778899999999999998876 347888888899999999999999999998764
Q ss_pred CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 374 ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 374 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
.|+...|..-+..-.-.++.++|.++++...+. ++.-...|..+.+.+-+.++.+.|.+.|..-.+. ++-....|-.
T Consensus 648 -sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWll 724 (913)
T KOG0495|consen 648 -SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLL 724 (913)
T ss_pred -CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHH
Confidence 567777777777777789999999999988875 3445677888889999999999999988776654 3444566777
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD 533 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 533 (647)
+...-.+.|.+-.|..++++....+ +.+...|...++.-.+.|+.+.|..++.++++. .+.+...|..-|....+.++
T Consensus 725 LakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~r 802 (913)
T KOG0495|consen 725 LAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQR 802 (913)
T ss_pred HHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCccc
Confidence 7777788899999999999998875 778889999999999999999999999998874 45567788888877777776
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEV 613 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 613 (647)
-..+.+.+++ ...|+++...+...+....++++|++.|+++++.+ +..-.+|..
T Consensus 803 kTks~DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d---------------------~d~GD~wa~ 856 (913)
T KOG0495|consen 803 KTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD---------------------PDNGDAWAW 856 (913)
T ss_pred chHHHHHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC---------------------CccchHHHH
Confidence 5444444443 35688889999999999999999999999999988 777889999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 614 MLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+...+.++|.-+.-.++++++....|.
T Consensus 857 fykfel~hG~eed~kev~~~c~~~EP~ 883 (913)
T KOG0495|consen 857 FYKFELRHGTEEDQKEVLKKCETAEPT 883 (913)
T ss_pred HHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 999999999999999999998876654
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5e-20 Score=189.00 Aligned_cols=426 Identities=12% Similarity=-0.034 Sum_probs=260.2
Q ss_pred HHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcC
Q 006396 173 ILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 173 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (647)
.....+.+.|++++|++.|++.+.. .|+...|..+..+|...|++++|++.++..++.+.. +...+..+..++...|
T Consensus 132 ~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~lg 208 (615)
T TIGR00990 132 EKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGLG 208 (615)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcC
Confidence 3445555566666666666665543 344455555566666666666666666666555321 3445555666666666
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 253 RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
++++|...|......+...+. ....++..... ..+........+.. +++......+.. +............+.
T Consensus 209 ~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 209 KYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAGLE 281 (615)
T ss_pred CHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhhhh
Confidence 666666655544432111111 11111111111 11122222222211 111122221111 111100000000011
Q ss_pred HHHHcCCCCc-HHHHHHHHHH---HHhcCCHHHHHHHHHHHHHCC-C-CCCccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 333 SLIMSNCIQD-VVLYNIMIDG---YVKLGNIGEAVQLYRQLIEKR-I-SPSIVTFNSLIYGFCKNGKVADARRLLDTIKL 406 (647)
Q Consensus 333 ~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (647)
..... .+. ...+..+... ....+++++|.+.|+..++.+ . +.....+..+...+...|++++|...++....
T Consensus 282 ~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~ 359 (615)
T TIGR00990 282 DSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIE 359 (615)
T ss_pred ccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 00000 000 0001111111 123467888888888888754 1 22344567777778888999999999988887
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006396 407 HGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITY 486 (647)
Q Consensus 407 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 486 (647)
.. +.....|..+...+...|++++|...|+...+.. +.+...|..+...+...|++++|...|++.++.. +.+...+
T Consensus 360 l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~ 436 (615)
T TIGR00990 360 LD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSH 436 (615)
T ss_pred cC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHH
Confidence 53 3345677788888888899999999998887763 4456778888888888999999999999988864 4566777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHH-------HH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVA-------YT 557 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~-------~~ 557 (647)
..+..++.+.|++++|+..+++.++. .| ++..++.++.++...|++++|+..|+++.+.. |+ ... +.
T Consensus 437 ~~la~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~--p~~~~~~~~~~~l~~ 512 (615)
T TIGR00990 437 IQLGVTQYKEGSIASSMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE--KETKPMYMNVLPLIN 512 (615)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--CccccccccHHHHHH
Confidence 78888888999999999999998873 34 57888889999999999999999999988742 32 111 11
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.....+...|++++|..++++++..+ |.+..++..++.++.+.|++++|.+.++++.+.
T Consensus 513 ~a~~~~~~~~~~~eA~~~~~kAl~l~---------------------p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 513 KALALFQWKQDFIEAENLCEKALIID---------------------PECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcC---------------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 22223334689999999999988876 566778889999999999999999999998765
Q ss_pred C
Q 006396 638 G 638 (647)
Q Consensus 638 ~ 638 (647)
.
T Consensus 572 ~ 572 (615)
T TIGR00990 572 A 572 (615)
T ss_pred h
Confidence 4
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-19 Score=184.56 Aligned_cols=429 Identities=12% Similarity=-0.009 Sum_probs=267.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 136 YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
+......+.+.|++++|...|++..+. .|+...|..+..+|...|++++|++.++..++.... +...+..+..+|..
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHH
Confidence 334455556666666666666666553 345555666666666666666666666666554211 23455556666666
Q ss_pred cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (647)
.|++++|+.-+..+...+...+. ....++..+.. ..+........+.. +++...+..+.. +...........-
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~-~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~ 279 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNE-QSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPAG 279 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccH-HHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchhh
Confidence 66666666655544433211111 11111111111 11222222222211 112222222222 1111111111111
Q ss_pred HHHHHhCCCCCCc-ccHHHHHHH---HhhcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 296 YNEMCSKRISPNS-FAHGAILLG---LCEKEMITEARMYFDSLIMSN--CIQDVVLYNIMIDGYVKLGNIGEAVQLYRQL 369 (647)
Q Consensus 296 ~~~~~~~~~~~~~-~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 369 (647)
+..... ..+.. ..+..+... ....+.+++|.+.|+.....+ .+.....+..+...+...|++++|+..+++.
T Consensus 280 ~~~~~~--~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka 357 (615)
T TIGR00990 280 LEDSNE--LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS 357 (615)
T ss_pred hhcccc--cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111111 11111 111111111 123457778888888877654 2334566777888888899999999999998
Q ss_pred HHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 370 IEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV 449 (647)
Q Consensus 370 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 449 (647)
++..+. ....+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...|+...+.. +.+..
T Consensus 358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~ 434 (615)
T TIGR00990 358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIF 434 (615)
T ss_pred HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHH
Confidence 876432 45567778888888999999999999888763 4567788888889999999999999999988764 34566
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--H------HHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--S------ATY 521 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~------~~~ 521 (647)
.+..+...+.+.|++++|+..+++.++.. +.+...++.+..++...|++++|...|++.+.. .|+ . ..+
T Consensus 435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l--~p~~~~~~~~~~~l~ 511 (615)
T TIGR00990 435 SHIQLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL--EKETKPMYMNVLPLI 511 (615)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc--CCccccccccHHHHH
Confidence 77778888889999999999999988753 556778888999999999999999999998873 332 1 112
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.....+...|++++|.++++++.+.+ +.+...+..++.++...|++++|+.+|+++.+..
T Consensus 512 ~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 512 NKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA 572 (615)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 222233445689999999999988753 3344578889999999999999999999998765
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-17 Score=161.87 Aligned_cols=595 Identities=13% Similarity=0.044 Sum_probs=305.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++++|..++.+++...+ .+..+|..|+.+|-+.|+.+++...+-.+....+. |...|..+.....+.|+++.|.-
T Consensus 151 arg~~eeA~~i~~EvIkqdp-~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls~~~~~i~qA~~ 228 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDP-RNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLSEQLGNINQARY 228 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCc-cchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHhcccHHHHHH
Confidence 45777777777777776444 66667777777777777777777666665554433 45667777777777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHH----HHHHHHhcCChhhHHHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSI----LAKGFHLLSQISGAWKVIQKLL 195 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~a~~~~~~~~ 195 (647)
.|.++++.. +++....-.-+..|-+.|+...|...|.++....++.|..-... +++.+...++.+.|++.++...
T Consensus 229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~ 307 (895)
T KOG2076|consen 229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL 307 (895)
T ss_pred HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 777777664 45555555556666677777777777777766533222222222 2344445555666776666665
Q ss_pred hcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCcCcccHHHHHHH
Q 006396 196 IKG-SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG---------------------------FKLNVIAYSVLLSS 247 (647)
Q Consensus 196 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~~~~l~~~ 247 (647)
..+ -..+...++.++..+.+...++.+........... ..++..+ ..++-+
T Consensus 308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic 386 (895)
T KOG2076|consen 308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC 386 (895)
T ss_pred hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence 521 12234456666666777777776666655554411 1111111 122223
Q ss_pred HHhcCChhHHHHHHHHHHHCC--CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHH
Q 006396 248 MCKSGRIDEALGLLYEMEAVG--LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMIT 325 (647)
Q Consensus 248 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 325 (647)
+......+....+........ +.-+...|.-+..++...|++.+|+.+|..+.......+...|..+..+|...+..+
T Consensus 387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e 466 (895)
T KOG2076|consen 387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE 466 (895)
T ss_pred hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence 333333334444444444433 222344566667777777777777777777766544444556667777777777777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CCCCCccchHHHHHHHHhcCCHHHH
Q 006396 326 EARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK--------RISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 326 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
+|.+.|+.++... +.+...--.|...+.+.|+.++|.+.+..+... +..|+..........+.+.|+.++-
T Consensus 467 ~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f 545 (895)
T KOG2076|consen 467 EAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF 545 (895)
T ss_pred HHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence 7777777776654 334444555566666777777777777664421 1222222233334445555655544
Q ss_pred HHHHHHHHHCC----------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHH------HHHhCCCCCCH-
Q 006396 398 RRLLDTIKLHG----------------------LEPSAVTYTTFMNAYCEEGNIQRLLALLQ------EMETKAIGPTH- 448 (647)
Q Consensus 398 ~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~~- 448 (647)
..+...|.... .+-.......++.+-.+.++......-.. .....+...+.
T Consensus 546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw 625 (895)
T KOG2076|consen 546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW 625 (895)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence 43333332110 00111111222222222222111111111 11111111111
Q ss_pred -HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHhC-C--CCCC-H
Q 006396 449 -VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQI----TYNTIIRSFCKCKDLRKAFQLLNQMWLH-N--LEPT-S 518 (647)
Q Consensus 449 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~--~~p~-~ 518 (647)
..+..++.++++.+++++|+.+...+..... .-+.. .-...+.+....+++..|...+..++.. + ..|. .
T Consensus 626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~ 705 (895)
T KOG2076|consen 626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL 705 (895)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence 1234455556666666666666666554321 11111 1223334445566666666666666542 1 1221 3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc-ccchhhh-----
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFE-ISIRDYT----- 592 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~----- 592 (647)
..|+..+....+.|+-.--.+++..+.......+.......+.-+...+.+..|+..+-++....-. |......
T Consensus 706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafi 785 (895)
T KOG2076|consen 706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFI 785 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHH
Confidence 4444334444444433333333333332211111111222223334445555555555554443321 1111111
Q ss_pred -------------------hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 -------------------KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 -------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+..+...+......++++.++++|...|-..-|..+|+++++..|
T Consensus 786 h~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p 851 (895)
T KOG2076|consen 786 HLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP 851 (895)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence 12222223333334678999999999999999999999999998754
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.7e-18 Score=162.23 Aligned_cols=616 Identities=14% Similarity=0.072 Sum_probs=376.7
Q ss_pred hHHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 4 FVYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
......|++++|..++.+++++++. +.++...+.+. ..|+.+.+...+--+-.-.+ .|...|-.+.....++|++.+
T Consensus 147 N~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p-~d~e~W~~ladls~~~~~i~q 225 (895)
T KOG2076|consen 147 NNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP-KDYELWKRLADLSEQLGNINQ 225 (895)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHhcccHHH
Confidence 3445569999999999999999753 33333334444 88999999988777766444 667899999999999999999
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHH
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY----NILIHGLCIAGSMEEALEFTN 157 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 157 (647)
|+-.|.++++..+ ++......-+..|-+.|+...|..-|.++.+...+.+..-+ ..+++.+...++-+.|.+.++
T Consensus 226 A~~cy~rAI~~~p-~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le 304 (895)
T KOG2076|consen 226 ARYCYSRAIQANP-SNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE 304 (895)
T ss_pred HHHHHHHHHhcCC-cchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999764 35666677788899999999999999999987532222222 234566677788899999888
Q ss_pred HHhhC-CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc----------------------hH----HHHH
Q 006396 158 DMGRH-GVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV----------------------TY----TVLI 210 (647)
Q Consensus 158 ~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------------~~----~~l~ 210 (647)
..... +-.-+...++.++..+.+...++.+...+........++|.. .| ..+.
T Consensus 305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~ 384 (895)
T KOG2076|consen 305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLM 384 (895)
T ss_pred HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHh
Confidence 88763 234456778899999999999999998888877621111111 11 1222
Q ss_pred HHHHhcCChHHHHHHHHHHHhCC--CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006396 211 CGYCQIGNVEEGLKLREVMLSQG--FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDK 288 (647)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (647)
-++.+....+....+.......+ +..++..|..+..++...|++.+|..+|..+......-+...|-.+.++|...|.
T Consensus 385 icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e 464 (895)
T KOG2076|consen 385 ICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGE 464 (895)
T ss_pred hhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhh
Confidence 33444455555555555555555 3345567888999999999999999999999887555567789999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH--------cCCCCcHHHHHHHHHHHHhcCCHH
Q 006396 289 VHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM--------SNCIQDVVLYNIMIDGYVKLGNIG 360 (647)
Q Consensus 289 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~ 360 (647)
.++|.+.|+..+... +-+...-..+...+.+.|+.++|.+.++.+.. ....|+..........+.+.|+.+
T Consensus 465 ~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E 543 (895)
T KOG2076|consen 465 YEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKRE 543 (895)
T ss_pred HHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHH
Confidence 999999999988762 33445556667778889999999999888542 223445555555666677777777
Q ss_pred HHHHHHHHHHHCC----------------------CCCCccchHHHHHHHHhcCCHHHHHHHHH------HHHHCCCCCC
Q 006396 361 EAVQLYRQLIEKR----------------------ISPSIVTFNSLIYGFCKNGKVADARRLLD------TIKLHGLEPS 412 (647)
Q Consensus 361 ~a~~~~~~~~~~~----------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~------~~~~~~~~~~ 412 (647)
+-+.+...|+... .+........++.+-.+.++.....+-.. .....++..+
T Consensus 544 ~fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsid 623 (895)
T KOG2076|consen 544 EFINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSID 623 (895)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHH
Confidence 6555544443311 00011111112222222222111111100 0001111111
Q ss_pred H--HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC--CCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCC--C-
Q 006396 413 A--VTYTTFMNAYCEEGNIQRLLALLQEMETKAI--GPTH---VTYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVT--P- 481 (647)
Q Consensus 413 ~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~--~- 481 (647)
. ..+..++..+++.+.+++|..+...+..... .++. ..-...+.+....+++..|...++.|+.. +.. |
T Consensus 624 dwfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~ 703 (895)
T KOG2076|consen 624 DWFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVY 703 (895)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhH
Confidence 1 2223334444455555555555444443211 1111 11122233333444555555544444432 000 0
Q ss_pred CHHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 482 DQITYN-----------------------------------TIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILI 525 (647)
Q Consensus 482 ~~~~~~-----------------------------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 525 (647)
-...|+ ........++.+..|+..+-++.. ..|+ +.+--.++
T Consensus 704 q~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~--~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 704 QLNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFR--QNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHH--hCCCCcHHHHHHH
Confidence 011122 112223345678888888877777 3454 22222222
Q ss_pred HHHhh----------cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhH
Q 006396 526 DGLCV----------NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKS 594 (647)
Q Consensus 526 ~~~~~----------~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 594 (647)
-++.. +-..-+...++.+..+.... -...++..++++|-..|-..-|..+|++++... +++..+..-
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~-p~~~~~~~~- 859 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVS-PKDVTDPKE- 859 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCC-ccccccccC-
Confidence 22221 11234456666666653211 145688999999999999999999999999764 111111000
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 595 FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
. ...-...+-..|.-.|..+|+...|..++++
T Consensus 860 ------d-~~dLrkeAA~NL~LIY~~SGn~~lArqil~k 891 (895)
T KOG2076|consen 860 ------D-NYDLRKEAAYNLHLIYKKSGNMQLARQILEK 891 (895)
T ss_pred ------C-cccHHHHHHhhhhhhhccCCcHHHHHHHHHh
Confidence 0 0011145566788899999999999999876
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.9e-17 Score=151.35 Aligned_cols=567 Identities=11% Similarity=0.021 Sum_probs=383.2
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..++...|+.+++++.+.+| .++..|.+-++.--..|+++.|..+..+-.+.. +.+..+|.-.+ +....+.|..
T Consensus 263 dl~DikKaR~llKSvretnP-~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~c-prSeDvWLeai----RLhp~d~aK~ 336 (913)
T KOG0495|consen 263 DLEDIKKARLLLKSVRETNP-KHPPGWIASARLEEVAGKLSVARNLIMKGCEEC-PRSEDVWLEAI----RLHPPDVAKT 336 (913)
T ss_pred cHHHHHHHHHHHHHHHhcCC-CCCchHHHHHHHHHHhhHHHHHHHHHHHHHhhC-CchHHHHHHHH----hcCChHHHHH
Confidence 45567899999999999777 888899999998899999999999888766543 33555665543 5566777888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
+.....+.. +.++..|...+..- .+...-.+++++.++. +|.++..|... ....+.+.|..++.+..+.
T Consensus 337 vvA~Avr~~-P~Sv~lW~kA~dLE---~~~~~K~RVlRKALe~-iP~sv~LWKaA----VelE~~~darilL~rAvec-- 405 (913)
T KOG0495|consen 337 VVANAVRFL-PTSVRLWLKAADLE---SDTKNKKRVLRKALEH-IPRSVRLWKAA----VELEEPEDARILLERAVEC-- 405 (913)
T ss_pred HHHHHHHhC-CCChhhhhhHHhhh---hHHHHHHHHHHHHHHh-CCchHHHHHHH----HhccChHHHHHHHHHHHHh--
Confidence 888887762 33444444333322 2333344566666665 55566555543 3344555577777777654
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH----HHHCCCCCCHhh
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE----MEAVGLKPDLVT 275 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~----~~~~~~~~~~~~ 275 (647)
-|. -.-|..++.+..-++.|.+++....+. ++.+...|..-...--..|+.+...+++++ +...|+..+..-
T Consensus 406 cp~---s~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdq 481 (913)
T KOG0495|consen 406 CPQ---SMDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQ 481 (913)
T ss_pred ccc---hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHH
Confidence 111 123344556666777777777777665 455667777777777777777777777654 344577777777
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 006396 276 YSILIRGLCKQDKVHKAIQLYNEMCSKRISPN--SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGY 353 (647)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 353 (647)
|..=...|-..|..-.+..+....+.-|+... ..++..-...|.+.+.++-++.+|...++.- +.+...|......-
T Consensus 482 Wl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~e 560 (913)
T KOG0495|consen 482 WLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFE 560 (913)
T ss_pred HHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHH
Confidence 77777777777777777777777766654432 3456666677777777777777777776643 34556666666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLL 433 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 433 (647)
-..|..+....++++.+..-+ -....|.....-+-..|+...|..++..+.+.. +.+...|..-+.......++++|.
T Consensus 561 k~hgt~Esl~Allqkav~~~p-kae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR 638 (913)
T KOG0495|consen 561 KSHGTRESLEALLQKAVEQCP-KAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERAR 638 (913)
T ss_pred HhcCcHHHHHHHHHHHHHhCC-cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHH
Confidence 667777777777877776532 244445555556666788888888877777653 345666777777777777788888
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006396 434 ALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN 513 (647)
Q Consensus 434 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 513 (647)
.+|...... .|+...|.--+....-.++.++|.+++++.++. ++.-...|..+.+.+-+.++++.|...|..-.+.
T Consensus 639 ~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~- 714 (913)
T KOG0495|consen 639 DLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK- 714 (913)
T ss_pred HHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-
Confidence 888777664 466666666666556667778888888777764 3444556777777777778888887777766652
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccch-hhh
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIR-DYT 592 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~ 592 (647)
.+..+..|..|...-.+.|.+-.|..++++..-++ +.+...|...++.-.+.|..+.|..++.++++.- |+.. .|.
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec--p~sg~LWa 791 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC--PSSGLLWA 791 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccchhHH
Confidence 23346677777777777777788888888777654 5566677777777788888888877777777642 2222 122
Q ss_pred hHH------------HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 KSF------------FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 ~~~------------~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..+ .+-++ .+..|++....++..+....+++.|+++|.++.+.++
T Consensus 792 EaI~le~~~~rkTks~DALk--kce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 792 EAIWLEPRPQRKTKSIDALK--KCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHhccCcccchHHHHHHH--hccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 111 11111 1356788899999999999999999999999998764
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.2e-20 Score=182.41 Aligned_cols=299 Identities=13% Similarity=0.091 Sum_probs=202.0
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---ccchHHHHHHHHhcCCH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS---IVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 394 (647)
+...|++++|...|..+...+ +.+..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|++
T Consensus 45 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~ 123 (389)
T PRK11788 45 FLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL 123 (389)
T ss_pred HHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence 344455555555555555443 23445666667777777777777777777765422111 13456667777777788
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhcCCHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH----VTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
++|..+|+.+.+.. +.+..++..++..+...|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|...
T Consensus 124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 88888777777642 445667777777788888888888888877765422211 2344566667778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
++++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......++..++.+|...|++++|...++++.+. .
T Consensus 203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~ 279 (389)
T PRK11788 203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y 279 (389)
T ss_pred HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence 88887653 34456677777888888888888888888876321222456777888888888888888888888774 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc---CCCHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ---GGDLGSV 627 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A 627 (647)
|+...+..++..+.+.|++++|..+++++++.. |+...+..+...+.. .|+.++|
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~----------------------P~~~~~~~l~~~~~~~~~~g~~~~a 337 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRH----------------------PSLRGFHRLLDYHLAEAEEGRAKES 337 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC----------------------cCHHHHHHHHHHhhhccCCccchhH
Confidence 566666777888888888888888888887764 555566655555443 4578888
Q ss_pred HHHHHHHHhCCCCCCC
Q 006396 628 FELAAVMIKSGLLPDK 643 (647)
Q Consensus 628 ~~~~~~~~~~~~~~~~ 643 (647)
..+++++++.++.|+.
T Consensus 338 ~~~~~~~~~~~~~~~p 353 (389)
T PRK11788 338 LLLLRDLVGEQLKRKP 353 (389)
T ss_pred HHHHHHHHHHHHhCCC
Confidence 8888888865555443
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-20 Score=182.86 Aligned_cols=308 Identities=14% Similarity=0.042 Sum_probs=227.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD---AFSYNILIH 141 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~ 141 (647)
.....+..+...|++++|+..|+++.+.++ .+..++..++..+...|++++|..+++.+...+..++ ...+..++.
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~ 115 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQ 115 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 344445667788888888888888887653 3556788888888888888888888888877532111 245677788
Q ss_pred HHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcC
Q 006396 142 GLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI----VTYTVLICGYCQIG 217 (647)
Q Consensus 142 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 217 (647)
.|.+.|++++|..+|+++.+. .+.+..++..++.++...|++++|.+.++.+.+.+..+.. ..+..+...+...|
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 888888888888888888765 3456778888888888888888888888888776433221 13455667778888
Q ss_pred ChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHH
Q 006396 218 NVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYN 297 (647)
Q Consensus 218 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 297 (647)
++++|.+.++++.+... .+...+..+...+.+.|++++|.+.++++...+......++..++.+|...|++++|...++
T Consensus 195 ~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~ 273 (389)
T PRK11788 195 DLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLR 273 (389)
T ss_pred CHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999998888887642 24556777888888889999999999888875322224567788888888899999999888
Q ss_pred HHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 006396 298 EMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQLIEKRI 374 (647)
Q Consensus 298 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~ 374 (647)
++.+. .|+...+..+...+.+.|++++|...++.+.+. .|+...++.++..+.. .|+.+++..+++++.+.++
T Consensus 274 ~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 349 (389)
T PRK11788 274 RALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL 349 (389)
T ss_pred HHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence 88775 455556667777788888888888888877765 3666677777766654 4578888888888887766
Q ss_pred CCCcc
Q 006396 375 SPSIV 379 (647)
Q Consensus 375 ~~~~~ 379 (647)
.|++.
T Consensus 350 ~~~p~ 354 (389)
T PRK11788 350 KRKPR 354 (389)
T ss_pred hCCCC
Confidence 66655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-19 Score=184.29 Aligned_cols=336 Identities=10% Similarity=0.040 Sum_probs=269.2
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
+..-...++..+.+.|++++|..+++........ +...+..++.+....|++++|+..++++.... +.+...+..+..
T Consensus 41 ~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~ 118 (656)
T PRK15174 41 NEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVAS 118 (656)
T ss_pred cccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3445666778888999999999999999887433 34556666677788999999999999998863 445567777888
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHH
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVAD 396 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 396 (647)
.+...|++++|...++...... +.+...+..+...+...|++++|...++.+....+. +...+..+ ..+...|++++
T Consensus 119 ~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 119 VLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHH
Confidence 8899999999999999998864 456778888899999999999999999988776443 23333333 34778899999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHH
Q 006396 397 ARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQE----AVQLLE 472 (647)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~ 472 (647)
|...++.+......++......+...+...|++++|...++...... +.+...+..+...+...|++++ |...++
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~ 274 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWR 274 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHH
Confidence 99999998776433444455556778889999999999999988764 4456778888899999999885 799999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
++.+.. +.+...+..+...+...|++++|...++++... .| +...+..+..++...|++++|...++++.+. .|
T Consensus 275 ~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P 349 (656)
T PRK15174 275 HALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KG 349 (656)
T ss_pred HHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--Cc
Confidence 998864 556778889999999999999999999999984 45 4777888899999999999999999999885 35
Q ss_pred CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 552 TKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 552 ~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.. .+..++.++...|++++|+..|+++++..
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 443 44456778899999999999999998875
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.5e-19 Score=179.33 Aligned_cols=324 Identities=13% Similarity=0.081 Sum_probs=214.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|+++.|+.+++.++...+ .++.++..++.+....|++++|...|+++....+. +...+..+...+.+.|++++|..
T Consensus 54 ~~g~~~~A~~l~~~~l~~~p-~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~g~~~~Ai~ 131 (656)
T PRK15174 54 RKDETDVGLTLLSDRVLTAK-NGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKSKQYATVAD 131 (656)
T ss_pred hcCCcchhHHHhHHHHHhCC-CchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHH
Confidence 67777778777777776444 56666777777777778888888888877765432 45567777777777788888888
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 199 (647)
.++++.+.. +.+...+..++..+...|++++|...++.+....+ .+...+..+ ..+...|++++|...++.+.....
T Consensus 132 ~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P-~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~ 208 (656)
T PRK15174 132 LAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVP-PRGDMIATC-LSFLNKSRLPEDHDLARALLPFFA 208 (656)
T ss_pred HHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCC-CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCC
Confidence 877777653 44566677777777777888877777777765432 223333333 336667777777777777766533
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH----HHHHHHHHHHCCCCCCHhh
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE----ALGLLYEMEAVGLKPDLVT 275 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~ 275 (647)
.++......+...+...|++++|.+.++.....+.. +...+..+...+...|++++ |...|++..... +.+...
T Consensus 209 ~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a 286 (656)
T PRK15174 209 LERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRI 286 (656)
T ss_pred CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHH
Confidence 333334444556677777777777777777766432 55566677777777777764 677777777653 224556
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006396 276 YSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK 355 (647)
Q Consensus 276 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (647)
+..+...+...|++++|+..+++..... +.+......+...+...|++++|...++.+..... .+...+..+..++..
T Consensus 287 ~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P-~~~~~~~~~a~al~~ 364 (656)
T PRK15174 287 VTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG-VTSKWNRYAAAALLQ 364 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHH
Confidence 7777777777777777777777777652 22344455566667777777777777777765531 122333334556677
Q ss_pred cCCHHHHHHHHHHHHHC
Q 006396 356 LGNIGEAVQLYRQLIEK 372 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~ 372 (647)
.|+.++|...|++..+.
T Consensus 365 ~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 365 AGKTSEAESVFEHYIQA 381 (656)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 77777777777777665
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-17 Score=169.01 Aligned_cols=207 Identities=14% Similarity=0.091 Sum_probs=114.1
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCccchHHHHHHH
Q 006396 314 ILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-----SPSIVTFNSLIYGF 388 (647)
Q Consensus 314 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~ 388 (647)
.+.++...++..++++.|+.+...+.+....+-..+..+|...+++++|+.+++.+..... +++......|..++
T Consensus 298 rl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ 377 (822)
T PRK14574 298 RLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL 377 (822)
T ss_pred HHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence 3445566667777777777777666544555666677777777777777777777655421 11222235566666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHH
Q 006396 389 CKNGKVADARRLLDTIKLHGLEPS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCKQWKLQE 466 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~ 466 (647)
..++++++|..+++.+.+. .|. ...+ |.. .....||-.. +..++..+...|+..+
T Consensus 378 ld~e~~~~A~~~l~~~~~~--~p~~~~~~----------~~~-----------~~~pn~d~~~~~~l~a~~~~~~gdl~~ 434 (822)
T PRK14574 378 NESEQLDKAYQFAVNYSEQ--TPYQVGVY----------GLP-----------GKEPNDDWIEGQTLLVQSLVALNDLPT 434 (822)
T ss_pred HhcccHHHHHHHHHHHHhc--CCcEEecc----------CCC-----------CCCCCccHHHHHHHHHHHHHHcCCHHH
Confidence 6677777777777766652 220 0000 000 0001122222 2233444555666666
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 467 AVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 467 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
|++.++.+.... |-|......+...+...|.+.+|+..++.+.. +.| +..+....+.++...|++++|..+.+.+.
T Consensus 435 Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~--l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~ 511 (822)
T PRK14574 435 AQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVES--LAPRSLILERAQAETAMALQEWHQMELLTDDVI 511 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 666666665543 45555666666666666666666666655444 234 34555555566666666666666666666
Q ss_pred H
Q 006396 546 E 546 (647)
Q Consensus 546 ~ 546 (647)
+
T Consensus 512 ~ 512 (822)
T PRK14574 512 S 512 (822)
T ss_pred h
Confidence 5
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.9e-18 Score=177.41 Aligned_cols=166 Identities=11% Similarity=0.017 Sum_probs=108.2
Q ss_pred CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHH
Q 006396 165 EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVL 244 (647)
Q Consensus 165 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 244 (647)
+.+.....-.+.+....|+.++|++++.+..... ..+...+..+...+...|++++|.++|+...+... .+...+..+
T Consensus 12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~l 89 (765)
T PRK10049 12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEP-QNDDYQRGL 89 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHH
Confidence 3455555556667777788888887777776521 22334567777777778888888888887776632 245556677
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCH
Q 006396 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI 324 (647)
Q Consensus 245 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 324 (647)
+.++...|++++|...++++.+.. +.+.. +..+..++...|+.++|+..++++.+.. +.+...+..+...+...+..
T Consensus 90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~ 166 (765)
T PRK10049 90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLS 166 (765)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCh
Confidence 777777888888888887777652 22344 6677777777788888888887777652 22333344455555566666
Q ss_pred HHHHHHHHHHH
Q 006396 325 TEARMYFDSLI 335 (647)
Q Consensus 325 ~~a~~~~~~~~ 335 (647)
+.|...++.+.
T Consensus 167 e~Al~~l~~~~ 177 (765)
T PRK10049 167 APALGAIDDAN 177 (765)
T ss_pred HHHHHHHHhCC
Confidence 66666665544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-17 Score=175.00 Aligned_cols=441 Identities=13% Similarity=0.014 Sum_probs=229.6
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.++....-.+.+....|+.++|+.+|.++.... +.+...+..++.++...|++++|..+++++++.. +.+...+..++
T Consensus 13 ~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la 90 (765)
T PRK10049 13 LSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGLI 90 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 444445555666677777777777777776422 2234456777777777777777777777777653 44455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (647)
..+...|++++|...++++.+. .+.+.. +..+..++...|+.++|+..++++.+..+. +...+..+..++...+..+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e 167 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSA 167 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChH
Confidence 6777777777777777777665 233444 666666777777777777777777665322 3334445556666666666
Q ss_pred HHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH---HHHHHHHH
Q 006396 221 EGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV---HKAIQLYN 297 (647)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~ 297 (647)
.|++.++.... .|+ +..-+ ....+....+-. +.......+++ ++|++.++
T Consensus 168 ~Al~~l~~~~~---~p~---~~~~l-------~~~~~~~~~r~~--------------~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 168 PALGAIDDANL---TPA---EKRDL-------EADAAAELVRLS--------------FMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HHHHHHHhCCC---CHH---HHHHH-------HHHHHHHHHHhh--------------cccccChhHHHHHHHHHHHHHH
Confidence 67666655443 121 00000 000000000000 00000111222 55666666
Q ss_pred HHHhC-CCCCCccc-HH----HHHHHHhhcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 298 EMCSK-RISPNSFA-HG----AILLGLCEKEMITEARMYFDSLIMSNCI-QDVVLYNIMIDGYVKLGNIGEAVQLYRQLI 370 (647)
Q Consensus 298 ~~~~~-~~~~~~~~-~~----~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 370 (647)
.+.+. ...|+... +. ..+..+...+++++|+..|+.+...+.+ |+. ....+..+|...|++++|+..|+++.
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l 299 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELF 299 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHh
Confidence 66543 11122111 00 0012223445555555555555444311 111 11113445555566666666665555
Q ss_pred HCCCCC---CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC
Q 006396 371 EKRISP---SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT 447 (647)
Q Consensus 371 ~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 447 (647)
+..+.. .......+..++...+++++|..+++.+.... ++....+. .....|+
T Consensus 300 ~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~-P~~~~~~~-----------------------~~~~~p~ 355 (765)
T PRK10049 300 YHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNS-PPFLRLYG-----------------------SPTSIPN 355 (765)
T ss_pred hcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcC-CceEeecC-----------------------CCCCCCC
Confidence 432111 01123333444455555555555555554431 11100000 0000122
Q ss_pred H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHH
Q 006396 448 H---VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNI 523 (647)
Q Consensus 448 ~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~ 523 (647)
. ..+..+...+...|+.++|++.++++.... |.+...+..+...+...|++++|++.+++++. ..|+ ...+..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~--l~Pd~~~l~~~ 432 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEV--LEPRNINLEVE 432 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh--hCCCChHHHHH
Confidence 1 234455556666777777777777776643 45556666677777777777777777777776 3453 555566
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
++..+...|++++|..+++++++. .|+......+-+.+
T Consensus 433 ~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~~ 470 (765)
T PRK10049 433 QAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARAR 470 (765)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence 666667777777777777777763 45544444444444
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4e-17 Score=166.72 Aligned_cols=431 Identities=12% Similarity=0.055 Sum_probs=281.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh--hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCc-chHH--HHHH
Q 006396 137 NILIHGLCIAGSMEEALEFTNDMGRHGVEPDA--ITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDI-VTYT--VLIC 211 (647)
Q Consensus 137 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~--~l~~ 211 (647)
..-+....+.|+++.|+..|++..+.. |+. ..+ .++..+...|+.++|+..+++.. .|+. ..+. .+..
T Consensus 38 y~~aii~~r~Gd~~~Al~~L~qaL~~~--P~~~~av~-dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ 110 (822)
T PRK14574 38 YDSLIIRARAGDTAPVLDYLQEESKAG--PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAAR 110 (822)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhhC--ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHH
Confidence 333444568999999999999998853 332 344 88888889999999999999987 2322 2233 3356
Q ss_pred HHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH
Q 006396 212 GYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHK 291 (647)
Q Consensus 212 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 291 (647)
.+...|++++|+++++.+.+.... ++..+..++..+...++.++|++.++++... .|+...+..++..+...++..+
T Consensus 111 ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~ 187 (822)
T PRK14574 111 AYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD 187 (822)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence 788889999999999999998644 5677778888999999999999999999876 5666666555555555666666
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH----HHHHHHhcC----------
Q 006396 292 AIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNI----MIDGYVKLG---------- 357 (647)
Q Consensus 292 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~---------- 357 (647)
|++.++++.+.. +.+...+..+...+.+.|-...|.++...-... -+...... .+.-..+.+
T Consensus 188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~---f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r 263 (822)
T PRK14574 188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL---VSAEHYRQLERDAAAEQVRMAVLPTRSETER 263 (822)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc---cCHHHHHHHHHHHHHHHHhhcccccccchhh
Confidence 999999999873 445667788888888899888888776653321 11111111 111112111
Q ss_pred --CHHHHHHHHHHHHHC-CCCCCcc-ch----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 358 --NIGEAVQLYRQLIEK-RISPSIV-TF----NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 358 --~~~~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
-.+.|+.-++.+... +..|... .+ .-.+.++...++..++++.|+.+...+.+....+-..+.++|...+++
T Consensus 264 ~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P 343 (822)
T PRK14574 264 FDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLP 343 (822)
T ss_pred HHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCc
Confidence 123344444454432 1112211 11 123445566777777777777777766555556667777777777777
Q ss_pred HHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHH
Q 006396 430 QRLLALLQEMETKA-----IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-----------TPDQ---ITYNTII 490 (647)
Q Consensus 430 ~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----------~~~~---~~~~~l~ 490 (647)
++|..+++.+.... ..++......|.-++...+++++|..+++.+.+... .|++ .....++
T Consensus 344 ~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a 423 (822)
T PRK14574 344 EKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLV 423 (822)
T ss_pred HHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHH
Confidence 77777777775532 122333345667777777777777777777776311 0111 1233445
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
..+...|++.+|++.++++... -+-|......+...+...|.+.+|++.++.+.... +-+..+....+.++...|++.
T Consensus 424 ~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~ 501 (822)
T PRK14574 424 QSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWH 501 (822)
T ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHH
Confidence 5566677777777777777663 13367777777777777777777777776655531 223446666677777777777
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|..+.+.+.+..
T Consensus 502 ~A~~~~~~l~~~~ 514 (822)
T PRK14574 502 QMELLTDDVISRS 514 (822)
T ss_pred HHHHHHHHHHhhC
Confidence 7777777777654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.3e-16 Score=139.64 Aligned_cols=440 Identities=12% Similarity=0.099 Sum_probs=264.8
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
+...|...+..-..++++..|..+|++++... ..+...|...+.+-.++.....|..+++..... .|.-...|-..+.
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~y 149 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIY 149 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHH
Confidence 44556666666666777777777777777655 556666777777777777777777777777664 2322334444555
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+-...|++..|.++|++.... .|+..+|.+.+..-.+-+.++.|..+++...-. .|++..|....+.-.+.|....
T Consensus 150 mEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~ 225 (677)
T KOG1915|consen 150 MEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL 225 (677)
T ss_pred HHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence 555567777777777777664 677777777777777777777777777777654 4667777777777777777777
Q ss_pred HHHHHHHHHHC-CC-CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHH
Q 006396 257 ALGLLYEMEAV-GL-KPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSL 334 (647)
Q Consensus 257 a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 334 (647)
+..+|+...+. |- ..+...+.+....-.++..++.|.-+|+-.+.+ -|...+
T Consensus 226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~ra------------------------ 279 (677)
T KOG1915|consen 226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRA------------------------ 279 (677)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccH------------------------
Confidence 77777766543 10 001122333333333455566666666665554 222111
Q ss_pred HHcCCCCcHHHHHHHHHHHHhcCCHHHHHH--------HHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 335 IMSNCIQDVVLYNIMIDGYVKLGNIGEAVQ--------LYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKL 406 (647)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 406 (647)
...|..+...--+.|+.....+ -++..+..+ +.|-.+|-..+..-...|+.+...++|+..+.
T Consensus 280 --------eeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa 350 (677)
T KOG1915|consen 280 --------EELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA 350 (677)
T ss_pred --------HHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 1111111111122222211111 123333332 23555566666666666777777777777665
Q ss_pred CCCCCCH--HHHHHHH--------HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhcCCHHHHHHHHH
Q 006396 407 HGLEPSA--VTYTTFM--------NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGL----CKQWKLQEAVQLLE 472 (647)
Q Consensus 407 ~~~~~~~--~~~~~l~--------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~g~~~~a~~~~~ 472 (647)
. ++|-. ..|...| -.-....+.+.+.++|+...+. ++....||.-+--.| .++.+...|.+++.
T Consensus 351 n-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG 428 (677)
T KOG1915|consen 351 N-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILG 428 (677)
T ss_pred c-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 4 34321 1111111 1112456777777788777763 344445555444333 35667777888777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.++ |..|-..++...|..-.+.++++.+..++++.++. .| +..+|...+..=...|+.+.|..+|+-+++...-.
T Consensus 429 ~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~--~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ld 504 (677)
T KOG1915|consen 429 NAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEF--SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALD 504 (677)
T ss_pred HHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhc--ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccc
Confidence 766 55677777777777777888888888888888773 34 56777777777777788888888888777642111
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 552 -TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 552 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....|-..+..-...|.+++|..+|+++++..
T Consensus 505 mpellwkaYIdFEi~~~E~ekaR~LYerlL~rt 537 (677)
T KOG1915|consen 505 MPELLWKAYIDFEIEEGEFEKARALYERLLDRT 537 (677)
T ss_pred cHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc
Confidence 12256666666677788888888888887765
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.4e-15 Score=132.24 Aligned_cols=470 Identities=11% Similarity=0.029 Sum_probs=308.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD-AFSYNILI 140 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~ 140 (647)
+...|-..++--..+++++.|+.+|++++... ..+...|...+.+-.+......|..+++++... -|. ...|...+
T Consensus 72 ~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ 148 (677)
T KOG1915|consen 72 NMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYI 148 (677)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHH
Confidence 44456666666667777777777777777654 335667777777777777777777777777765 233 22455555
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 220 (647)
.+--..|+...|.++|+...+ ..|+...|++.+..-.+-+..+.|..++++.+-. .|+..+|...+..-.++|...
T Consensus 149 ymEE~LgNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~ 224 (677)
T KOG1915|consen 149 YMEEMLGNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVA 224 (677)
T ss_pred HHHHHhcccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHH
Confidence 555556777777777777766 4677777777777777777777777777777654 567777777777777777777
Q ss_pred HHHHHHHHHHhC-C-CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HhhHHHHHHHHHccCCHHHHHHH-
Q 006396 221 EGLKLREVMLSQ-G-FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD--LVTYSILIRGLCKQDKVHKAIQL- 295 (647)
Q Consensus 221 ~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~- 295 (647)
.+..+|+..... | -..+...+.+....-.++..++.|.-+|+-..+. ++.+ ...|......--+-|+.....+.
T Consensus 225 ~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~I 303 (677)
T KOG1915|consen 225 LARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAI 303 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHH
Confidence 777777766553 1 0112234445555555566677777777776665 1112 22333333333334443332222
Q ss_pred -------HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH-HHHHH--------HHHHHhcCCH
Q 006396 296 -------YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV-LYNIM--------IDGYVKLGNI 359 (647)
Q Consensus 296 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l--------~~~~~~~~~~ 359 (647)
|+.+++.+ +.|-.++...+......|+.+...++|+..+..-++.+.. .|... +-.-....+.
T Consensus 304 v~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ 382 (677)
T KOG1915|consen 304 VGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDV 382 (677)
T ss_pred hhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33333332 4455666666776677778888888888777653222211 12211 1222346788
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHH----HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGF----CKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
+.+.++|+..++. ++....||..+--.| .++.++..|.+++...+ |..|...+|...|..-.+.++++.+..+
T Consensus 383 ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkL 459 (677)
T KOG1915|consen 383 ERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKL 459 (677)
T ss_pred HHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHH
Confidence 8899999888874 444666666554444 45788899999888776 4478888899888888899999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
++...+-+ +.+..+|......-...|+.+.|..+|+-++... .......|.+.|..-...|.+++|..+++++++.
T Consensus 460 YEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r-- 536 (677)
T KOG1915|consen 460 YEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR-- 536 (677)
T ss_pred HHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--
Confidence 99988875 5567788887777778899999999999888643 2223456666677667889999999999999883
Q ss_pred CCCHHHHHHHHHHHh-----hcC-----------ChhhHHHHHHHHHH
Q 006396 515 EPTSATYNILIDGLC-----VNG-----------DLKNADCLLVSLQE 546 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~ 546 (647)
.+...+|......-. +.+ ....|..+|+++..
T Consensus 537 t~h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 537 TQHVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred cccchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 344456655544333 223 45678888888764
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.8e-15 Score=131.97 Aligned_cols=389 Identities=17% Similarity=0.174 Sum_probs=263.8
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV 243 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 243 (647)
.+.+..++.++|.++++--..+.|.+++++......+.+..+||.+|.+-.-.. ..++..+|.+..+.||..++|+
T Consensus 203 ~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~Pnl~TfNa 278 (625)
T KOG4422|consen 203 LPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMTPNLFTFNA 278 (625)
T ss_pred cCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcCCchHhHHH
Confidence 456788999999999999999999999999988878889999999987654332 2788999999999999999999
Q ss_pred HHHHHHhcCChhH----HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHH-HHHHHHHHHh----CCCCCC----ccc
Q 006396 244 LLSSMCKSGRIDE----ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHK-AIQLYNEMCS----KRISPN----SFA 310 (647)
Q Consensus 244 l~~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~----~~~~~~----~~~ 310 (647)
++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++.++.. +.+.|- ...
T Consensus 279 lL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~F 358 (625)
T KOG4422|consen 279 LLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKF 358 (625)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHH
Confidence 9999999998765 56788899999999999999999999999888754 4555555543 333333 333
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHcC----CCCc---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHH
Q 006396 311 HGAILLGLCEKEMITEARMYFDSLIMSN----CIQD---VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNS 383 (647)
Q Consensus 311 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (647)
+...+..|.+..+.+.|.++..-+.... +.++ ..-|..+....++....+.....|+.|+-.-+-|+..+...
T Consensus 359 F~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 359 FQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHH
Confidence 5566677778888888888877665432 1222 22355677778888889999999999998877888889999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHh
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT---HVTYTVVIKGLCK 460 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~ 460 (647)
++++....+.++-..++|.++...|...+......++..+++. ...|+ ..-+.....-|+.
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~----------------k~hp~tp~r~Ql~~~~ak~aa 502 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD----------------KLHPLTPEREQLQVAFAKCAA 502 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC----------------CCCCCChHHHHHHHHHHHHHH
Confidence 9999999999999999999998876544443333333333322 22222 1122222222211
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC---HHHHHHHHHHHhhcCChhh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT---SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~---~~~~~~l~~~~~~~g~~~~ 536 (647)
.-.+.....-.++.+. .......+.++..+.+.|..++|.+++..+.+.+ --|. ......+++.-...+++..
T Consensus 503 -d~~e~~e~~~~R~r~~--~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsq 579 (625)
T KOG4422|consen 503 -DIKEAYESQPIRQRAQ--DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQ 579 (625)
T ss_pred -HHHHHHHhhHHHHHhc--cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHH
Confidence 1111122223344443 3344556666666778888888888887775532 2222 3333355566666777888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|...++-|...+.+.-...-..+...|.-.....+|+.-
T Consensus 580 A~~~lQ~a~~~n~~~~E~La~RI~e~f~iNqeq~~~ls~ 618 (625)
T KOG4422|consen 580 AIEVLQLASAFNLPICEGLAQRIMEDFAINQEQKEALSN 618 (625)
T ss_pred HHHHHHHHHHcCchhhhHHHHHHHHhcCcCHHHHHHHhh
Confidence 888888777655433333344444444444444444433
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-15 Score=130.05 Aligned_cols=236 Identities=14% Similarity=0.213 Sum_probs=100.4
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
..++..+|.++++--+.++|.+++++......+.+..++|.+|.+-.-..+ .+++.+|......||..|+|+++++
T Consensus 207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c 282 (625)
T KOG4422|consen 207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSC 282 (625)
T ss_pred chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHH
Confidence 334444444444444444444444444443334444444444443322211 3444444444444444444444444
Q ss_pred HHhcCChHH----HHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh-HHHHHHHHHHHC----CCC----CCHhhHHHH
Q 006396 213 YCQIGNVEE----GLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID-EALGLLYEMEAV----GLK----PDLVTYSIL 279 (647)
Q Consensus 213 ~~~~~~~~~----a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~----~~~----~~~~~~~~l 279 (647)
..+.|+++. |.+++.+|++.|+.|+..+|..+|..+.+.++.. .+..++.++... .++ .|...+...
T Consensus 283 ~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~A 362 (625)
T KOG4422|consen 283 AAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSA 362 (625)
T ss_pred HHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHH
Confidence 444444332 2234444444444444444444444444443331 222333322211 111 122233444
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC----CCCCC---cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSK----RISPN---SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDG 352 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 352 (647)
+..|....+.+-|.++..-+... -+.|+ ..-+..+....+.....+.-..+|+.+.-.-..|+..+...++++
T Consensus 363 M~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA 442 (625)
T KOG4422|consen 363 MSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA 442 (625)
T ss_pred HHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH
Confidence 44444444444444443333211 01111 122333444444445555555555555544444455555555555
Q ss_pred HHhcCCHHHHHHHHHHHHHC
Q 006396 353 YVKLGNIGEAVQLYRQLIEK 372 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~ 372 (647)
..-.+.++-..+++.+++..
T Consensus 443 ~~v~~~~e~ipRiw~D~~~~ 462 (625)
T KOG4422|consen 443 LDVANRLEVIPRIWKDSKEY 462 (625)
T ss_pred HhhcCcchhHHHHHHHHHHh
Confidence 55555555555555555543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-15 Score=135.08 Aligned_cols=481 Identities=12% Similarity=0.038 Sum_probs=290.7
Q ss_pred HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----hhhHHH
Q 006396 99 VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY-NILIHGLCIAGSMEEALEFTNDMGRHGVEPD----AITYSI 173 (647)
Q Consensus 99 ~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~ 173 (647)
.++..+..-|.....+.+|+..|+-+.+....|+.... ..+...+.+.+.+.+|++.++-.+..=+..+ ....+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 34555666666666677777777777766656665433 2344556667777777777766654311111 122233
Q ss_pred HHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcc--------cHHHHH
Q 006396 174 LAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVI--------AYSVLL 245 (647)
Q Consensus 174 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--------~~~~l~ 245 (647)
+...+.+.|+++.|+..|+...+. .|+..+-..|+-++...|+.++..+.|.++......+|.. .-..|+
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 333455667777777777666554 4555444444445555667777777776666542222211 111222
Q ss_pred HHHHhcCChhH--------HHHH---HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 246 SSMCKSGRIDE--------ALGL---LYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 246 ~~~~~~g~~~~--------a~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
.--.+...+.. |++. --++..--+.|+-.. -.+-+++.++.-... +.-...-..-
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~------------g~dwcle~lk~s~~~--~la~dlei~k 425 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAA------------GCDWCLESLKASQHA--ELAIDLEINK 425 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhc------------ccHHHHHHHHHhhhh--hhhhhhhhhH
Confidence 21111111110 1111 111111001111000 001111111111000 0000000112
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH-h-cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV-K-LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG 392 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 392 (647)
...+.++|+++.|.++++-+.+.+...-...-+.+-..+. + -.++..|..+-+..+... ..+......-.......|
T Consensus 426 a~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ng 504 (840)
T KOG2003|consen 426 AGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANG 504 (840)
T ss_pred HHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecC
Confidence 3346788999999999888877653333333333333322 2 335667766666555431 112222222223344679
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
++++|...|.+.......- ...+..+.-.+-..|+.++|++.|-.+... +..+......+...|....++..|++++.
T Consensus 505 d~dka~~~ykeal~ndasc-~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 505 DLDKAAEFYKEALNNDASC-TEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred cHHHHHHHHHHHHcCchHH-HHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 9999999999988653222 222223344567789999999999876542 12356677778888888999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 552 (647)
+.... ++.|+.++..|...|-+.|+-..|.+++-.--+. ++-+..+...|..-|....-+++|+.+|+++.- +.|+
T Consensus 583 q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~ 658 (840)
T KOG2003|consen 583 QANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPN 658 (840)
T ss_pred Hhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCcc
Confidence 87765 6778999999999999999999999987665553 455889999999999999999999999999876 7899
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 553 KVAYTTII-KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 553 ~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
..-|..++ +++.+.|++++|.++|+..-++ +|.+.++...|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrk---------------------fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRK---------------------FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHh---------------------CccchHHHHHHHHHhccccc
Confidence 99997766 4556689999999999999876 48999999999999998885
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-16 Score=137.25 Aligned_cols=441 Identities=14% Similarity=0.100 Sum_probs=286.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchH-HHHHHHHHhcCChHHHHHHHHHHHhCCCCcCc----ccHHH
Q 006396 169 ITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTY-TVLICGYCQIGNVEEGLKLREVMLSQGFKLNV----IAYSV 243 (647)
Q Consensus 169 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 243 (647)
.+...|..-|..+....+|+..++-+++...-|+.... ..+...+.+..++.+|++.++..+..-+..+. ...+.
T Consensus 202 svl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~n 281 (840)
T KOG2003|consen 202 SVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNN 281 (840)
T ss_pred HHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhh
Confidence 33444556666677777888888888777666665433 23456677788888888888877765322222 23444
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC--------cccHHHHH
Q 006396 244 LLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN--------SFAHGAIL 315 (647)
Q Consensus 244 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~ 315 (647)
+.-.+.+.|+++.|+..|+...+. .|+..+-..++-++..-|+.++..+.|.+|..-...|+ ......++
T Consensus 282 igvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll 359 (840)
T KOG2003|consen 282 IGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLL 359 (840)
T ss_pred cCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHH
Confidence 455667788888888888887765 67776666666667777888888888888765321111 11122222
Q ss_pred HHHhhcC--------CHHHHHHHHHHH---HHcCCCCcH-----HHHH----------------HHHHHHHhcCCHHHHH
Q 006396 316 LGLCEKE--------MITEARMYFDSL---IMSNCIQDV-----VLYN----------------IMIDGYVKLGNIGEAV 363 (647)
Q Consensus 316 ~~~~~~~--------~~~~a~~~~~~~---~~~~~~~~~-----~~~~----------------~l~~~~~~~~~~~~a~ 363 (647)
.--.+.. +-..|++..-.. +..-+.|+- ++.. .-..-+.+.|+++.|+
T Consensus 360 ~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~ai 439 (840)
T KOG2003|consen 360 NEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAI 439 (840)
T ss_pred HHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHH
Confidence 2221111 111222222111 111111110 0000 0122467889999999
Q ss_pred HHHHHHHHCCCCCCccchHHHH-HHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006396 364 QLYRQLIEKRISPSIVTFNSLI-YGFCK-NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMET 441 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~-~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (647)
++++-+..+.-......-+.+- --|.+ .+++..|..+-+...... .-+......-...-...|++++|.+.+++...
T Consensus 440 eilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ 518 (840)
T KOG2003|consen 440 EILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKEALN 518 (840)
T ss_pred HHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHHHHc
Confidence 9998887653322222222221 22222 345667766666555322 23333333333334467899999999999987
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006396 442 KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 442 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
....-....|+ +.-.+...|+.++|+..|-++... +..+..++..+.+.|....+...|++++...... ++.|+.+.
T Consensus 519 ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~il 595 (840)
T KOG2003|consen 519 NDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAIL 595 (840)
T ss_pred CchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHH
Confidence 53222222233 233456789999999999887753 3557778888999999999999999999888763 44479999
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhh
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLS 601 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 601 (647)
..|.+.|-+.|+-.+|.+.+-.--.. ++-+..+..++..-|....-+++|+.+|+++.-
T Consensus 596 skl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-------------------- 654 (840)
T KOG2003|consen 596 SKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-------------------- 654 (840)
T ss_pred HHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--------------------
Confidence 99999999999999999887665553 566888999999999999999999999999865
Q ss_pred CCCCCCHHHHHHHH-HHHHcCCCHHHHHHHHHHHHhCC
Q 006396 602 NGFPPDQEICEVML-IAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 602 ~~~~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+.|+..-|..++ .++.+.|++..|.++++.....-
T Consensus 655 --iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 655 --IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred --cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 468888888666 66667899999999999988753
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.1e-12 Score=118.32 Aligned_cols=580 Identities=11% Similarity=0.051 Sum_probs=376.9
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHH-------hcCC----hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 13 HDAVFVIAKMKELDLKVSIQTYNSLLY-------NLRH----TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~ll~-------~~~~----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
.+-..+|+++++.- .-+-..|...|. ...- ++..-..|++....-. .-+..|......+.++|+...
T Consensus 43 k~~~~lYERal~~l-p~sykiW~~YL~~R~~~vk~~~~T~~~~~~vn~c~er~lv~mH-kmpRIwl~Ylq~l~~Q~~iT~ 120 (835)
T KOG2047|consen 43 KQRNLLYERALKEL-PGSYKIWYDYLKARRAQVKHLCPTDPAYESVNNCFERCLVFMH-KMPRIWLDYLQFLIKQGLITR 120 (835)
T ss_pred HHHHHHHHHHHHHC-CCchHHHHHHHHHHHHHhhccCCCChHHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHhcchHHH
Confidence 34567888888863 345566666664 1222 3444445554432111 345678888999999999999
Q ss_pred HHHHHHHhhcCC-CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 006396 82 AILFLQETAGKE-FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMG 160 (647)
Q Consensus 82 a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 160 (647)
-+..|++++..- +.....+|...+......|-++-+..++++-++. ++..-+-.|..++..+++++|.+.+...+
T Consensus 121 tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vl 196 (835)
T KOG2047|consen 121 TRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVL 196 (835)
T ss_pred HHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence 999999998753 2233458999999999999999999999999976 34446777888899999999999988875
Q ss_pred hC------CCCCChhhHHHHHHHHHhcCChh---hHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 161 RH------GVEPDAITYSILAKGFHLLSQIS---GAWKVIQKLLIKGSDPD--IVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 161 ~~------~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.. ..+.+...|..+-...+++.+.- ...++++.+... -+| ...|++|...|.+.|.+++|..+|++.
T Consensus 197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeea 274 (835)
T KOG2047|consen 197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEA 274 (835)
T ss_pred CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 43 12345566777766666554432 344555555543 334 346899999999999999999999998
Q ss_pred HhCCCCcCcccHHHHHHHHHhcCC----------------------hhHHHHHHHHHHHCC-----------CCCCHhhH
Q 006396 230 LSQGFKLNVIAYSVLLSSMCKSGR----------------------IDEALGLLYEMEAVG-----------LKPDLVTY 276 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~----------------------~~~a~~~~~~~~~~~-----------~~~~~~~~ 276 (647)
... ..+..-|..+.+.|..... ++-...-|+.+.... -+.++..|
T Consensus 275 i~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW 352 (835)
T KOG2047|consen 275 IQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEW 352 (835)
T ss_pred HHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHH
Confidence 876 3355556666666554221 122233333333221 01123333
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc------ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCc---HHHHH
Q 006396 277 SILIRGLCKQDKVHKAIQLYNEMCSKRISPNS------FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQD---VVLYN 347 (647)
Q Consensus 277 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~ 347 (647)
..-+. +..|+..+-...|.++.+. +.|.. ..+..+...|-..|+++.|..+|+...+.+.+.- ..+|.
T Consensus 353 ~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~ 429 (835)
T KOG2047|consen 353 HKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWC 429 (835)
T ss_pred Hhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHH
Confidence 33222 3456777888888888765 33332 3456777888899999999999999887653322 34555
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------------CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISP-----------------SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLE 410 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 410 (647)
.-...-.+..+++.|+++.++.....-.| +...|+..+..--..|-++....+|+.+....+.
T Consensus 430 ~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria 509 (835)
T KOG2047|consen 430 AWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA 509 (835)
T ss_pred HHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC
Confidence 55566667888999999988876542111 1223444555555677888888888888875432
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-TYTVVIKGLCK---QWKLQEAVQLLEDMYVIGVTPDQITY 486 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~ 486 (647)
. +.........+-...-++++.+++++-...-..|+.. .|+..+.-+.+ ...++.|..+|++.++ |.+|...-+
T Consensus 510 T-Pqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKt 587 (835)
T KOG2047|consen 510 T-PQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKT 587 (835)
T ss_pred C-HHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHH
Confidence 2 2222222223344556788888887765554345543 45555444432 3478999999999998 556544322
Q ss_pred HHHH--HHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH---HHHHH
Q 006396 487 NTII--RSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV---AYTTI 559 (647)
Q Consensus 487 ~~l~--~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l 559 (647)
.-|+ ..--+.|-...|..+++++... +++. ..+|+.++.--...=-......+|+++++. -|+.. .....
T Consensus 588 iyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r~mclrF 664 (835)
T KOG2047|consen 588 IYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAREMCLRF 664 (835)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHHHHHHHH
Confidence 2222 2223568889999999998764 4443 567887776555554566678899999985 45544 33455
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
+..-.+.|..+.|..++.-..+.- +...+.+.|...-..-.++|+-+.-++
T Consensus 665 AdlEtklGEidRARaIya~~sq~~-------------------dPr~~~~fW~twk~FEvrHGnedT~ke 715 (835)
T KOG2047|consen 665 ADLETKLGEIDRARAIYAHGSQIC-------------------DPRVTTEFWDTWKEFEVRHGNEDTYKE 715 (835)
T ss_pred HHHhhhhhhHHHHHHHHHhhhhcC-------------------CCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence 566678899999999999887754 223457788888888888888443333
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.8e-14 Score=127.14 Aligned_cols=327 Identities=10% Similarity=0.006 Sum_probs=235.3
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH--HHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAH--GAI 314 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~l 314 (647)
|...+......+.+.|..+.|+..|...... -+..|...+....-..+.+.+.. .... .+.+.... ..+
T Consensus 163 D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e~~~~----l~~~-l~~~~h~M~~~F~ 233 (559)
T KOG1155|consen 163 DEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIEILSI----LVVG-LPSDMHWMKKFFL 233 (559)
T ss_pred hhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHHHHHH----HHhc-CcccchHHHHHHH
Confidence 4444444555566677778888888777643 23344444433322233332222 2111 12111111 123
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCccchHHHHHHHHhcC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRIS--PSIVTFNSLIYGFCKNG 392 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~ 392 (647)
..++....+.+++..-.+.+...|.+.+...-+....+.....+++.|+.+|+++....+- -|..+|+.++..-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 4455556677788888888888777767766677777777888999999999999887321 14556665554432211
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
. ..++.+-...--+-.+.|...+.+.|+-.++.++|...|+...+.+ +.....|+.+..-|....+...|.+.++
T Consensus 314 k----Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYR 388 (559)
T KOG1155|consen 314 K----LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYR 388 (559)
T ss_pred H----HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHH
Confidence 1 1122111111013445677788888999999999999999999875 4456679999999999999999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.+++.. |.|-..|-.|.++|.-.+...-|+-+|+++.. ++| |+..|.+|+.+|.+.++.++|++.|.++...| ..
T Consensus 389 rAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dt 464 (559)
T KOG1155|consen 389 RAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DT 464 (559)
T ss_pred HHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-cc
Confidence 999875 77889999999999999999999999999998 566 79999999999999999999999999999875 45
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
+...+..+++.|.+.++.++|...|++.++
T Consensus 465 e~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 465 EGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred chHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 678999999999999999999999999886
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-17 Score=151.30 Aligned_cols=261 Identities=14% Similarity=0.131 Sum_probs=117.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKR-ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEE 426 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 426 (647)
.+...+.+.|++++|+++++...... .+.+...|..+...+...++.+.|...++++...+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 45677888999999999997655543 34455566666777778899999999999998764 3355667777776 688
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 427 GNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 427 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+++++|..++....+. .++...+...+..+...++++++..+++.+.... .+.+...|..+...+.+.|+.++|.++
T Consensus 91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~ 168 (280)
T PF13429_consen 91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD 168 (280)
T ss_dssp -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9999999998877655 3566677788888999999999999999987633 356778888999999999999999999
Q ss_pred HHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 506 LNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGF 584 (647)
Q Consensus 506 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 584 (647)
++++++ ..| |......++..+...|+.+++.+++....+.. +.|+..+..++.++...|++++|+.+++++.+..
T Consensus 169 ~~~al~--~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~- 244 (280)
T PF13429_consen 169 YRKALE--LDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN- 244 (280)
T ss_dssp HHHHHH--H-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-
T ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-
Confidence 999999 456 58888999999999999999999999988753 5667788999999999999999999999999987
Q ss_pred cccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 585 EISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
|.|+.....++.++...|+.++|.++..++.+
T Consensus 245 --------------------p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 --------------------PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp --------------------TT-HHHHHHHHHHHT-----------------
T ss_pred --------------------cccccccccccccccccccccccccccccccc
Confidence 88999999999999999999999999888764
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.7e-12 Score=114.65 Aligned_cols=365 Identities=12% Similarity=0.029 Sum_probs=264.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhh--HH
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVT--YS 277 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~ 277 (647)
..|...+-.....+.+.|..+.|...|...... -+..|.+.+....-..+.+ +....... ...|... =-
T Consensus 161 ~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~----~P~~W~AWleL~~lit~~e----~~~~l~~~-l~~~~h~M~~~ 231 (559)
T KOG1155|consen 161 EKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNR----YPWFWSAWLELSELITDIE----ILSILVVG-LPSDMHWMKKF 231 (559)
T ss_pred cchhHHHHHHHHHHHhhchHHHHHHHHHHHHhc----CCcchHHHHHHHHhhchHH----HHHHHHhc-CcccchHHHHH
Confidence 335544444455667888999999998888765 3444544444333233332 22222222 1222111 12
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCC--CCcHHHHHHHHHHHHh
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNC--IQDVVLYNIMIDGYVK 355 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~ 355 (647)
.+..++-...+.+++..-.+.....|++.+...-+..........++++|+.+|+.+.+..+ ..|..+|+.++- .+
T Consensus 232 F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~ 309 (559)
T KOG1155|consen 232 FLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VK 309 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HH
Confidence 33455556667888888888888888776666666666777788899999999999998752 236677777653 33
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 356 LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
..+.. +..+..-...--+--+.|...+.+-|+-.++.++|...|+...+.+ +.....|+.+.+-|...++...|++.
T Consensus 310 ~~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~s 386 (559)
T KOG1155|consen 310 NDKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIES 386 (559)
T ss_pred hhhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHH
Confidence 33222 2222222111112345677888899999999999999999999864 44567788888999999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
++...+-. +-|-..|-.+.++|.-.+.+.=|+-.|+++.+.. |.|...|.+|..+|.+.++.++|++.|.+....| .
T Consensus 387 YRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-d 463 (559)
T KOG1155|consen 387 YRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-D 463 (559)
T ss_pred HHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-c
Confidence 99999875 5688899999999999999999999999999874 7789999999999999999999999999999865 4
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEH----NI-SL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...+..|++.|.+.++..+|...|++-++. |. .| ...+...|..-+.+.+++++|-.+......
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~ 535 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK 535 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence 46788999999999999999999999887752 22 22 122344466777888888888877666654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-12 Score=120.37 Aligned_cols=492 Identities=12% Similarity=0.059 Sum_probs=309.2
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
-+..+.+-+..+.++.-|.-+-+++...+ .++..-.-++..+.-.|+++.|..+...-.-. ..+..........+.
T Consensus 18 ~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~ 93 (611)
T KOG1173|consen 18 KYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLV 93 (611)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHH
Confidence 34445555666667777777777776654 34444445667777777777777766554322 345556666666777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLK 224 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 224 (647)
+..++++|..++.... +..++..+-.--. ...-..+.+. ... ++......+-.-...|....+.++|..
T Consensus 94 ~lk~~~~al~vl~~~~---~~~~~f~yy~~~~--~~~l~~n~~~----~~~--~~~~essic~lRgk~y~al~n~~~ar~ 162 (611)
T KOG1173|consen 94 KLKEWDQALLVLGRGH---VETNPFSYYEKDA--ANTLELNSAG----EDL--MINLESSICYLRGKVYVALDNREEARD 162 (611)
T ss_pred HHHHHHHHHHHhcccc---hhhcchhhcchhh--hceeccCccc----ccc--cccchhceeeeeeehhhhhccHHHHHH
Confidence 7777777777766331 1111111110000 0000011111 000 001111112222334555667777777
Q ss_pred HHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC----CCHhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 006396 225 LREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK----PDLVTYSILIRGLCKQDKVHKAIQLYNEMC 300 (647)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 300 (647)
.|.+.... |+..+..+...-.. ..-.+.+.++.+...... .+......+.....-...-+.....-++..
T Consensus 163 ~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~s 236 (611)
T KOG1173|consen 163 KYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDES 236 (611)
T ss_pred HHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhh
Confidence 77777665 44444433222111 111222222222221100 011111111111100000000000000001
Q ss_pred hCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccc
Q 006396 301 SKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVT 380 (647)
Q Consensus 301 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 380 (647)
-.+...+......-...+....++.++.++.+.+.... ++....+..-|.++...|+..+-..+-.++++.- |..+.+
T Consensus 237 l~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~s 314 (611)
T KOG1173|consen 237 LIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALS 314 (611)
T ss_pred hhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcc
Confidence 11223344555556666778899999999999998876 4566677777778999999999888888998874 447888
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
|-.+.--|...|+.++|++.|.+..... +.=...|..+...|...+..++|...+....+.- +-....+-.+.--|.+
T Consensus 315 W~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~ 392 (611)
T KOG1173|consen 315 WFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMR 392 (611)
T ss_pred hhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHH
Confidence 9999999999999999999999887643 2234678889999999999999999998877641 1122223344455778
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--CC---C-CCHHHHHHHHHHHhhcCCh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH--NL---E-PTSATYNILIDGLCVNGDL 534 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~---~-p~~~~~~~l~~~~~~~g~~ 534 (647)
.++.+.|.+.|..+.... |.|+..++.+.-.....+.+.+|..+|+..+.. .. . .-..+++.|+.+|.+.+.+
T Consensus 393 t~n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~ 471 (611)
T KOG1173|consen 393 TNNLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKY 471 (611)
T ss_pred hccHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhH
Confidence 899999999999998753 667888888888888889999999999988731 11 1 1356789999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++|+..+++.+... +.+..++.+++-.|...|+++.|++.|.+++...
T Consensus 472 ~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 472 EEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 99999999999863 6678899999999999999999999999999865
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-13 Score=131.76 Aligned_cols=284 Identities=11% Similarity=0.033 Sum_probs=192.7
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchH--HHHHHHHhcCCHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVL-YNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFN--SLIYGFCKNGKVADA 397 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a 397 (647)
.|+++.|++.+....... +++.. +.....+..+.|+++.|...+.++.+. .|+..... .....+...|+++.|
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A 172 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA 172 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence 455555554444433321 11222 222334446778888888888887764 33433222 235567778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHH
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-------TYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~ 470 (647)
...++.+.+.. +-+......+...|.+.|++++|.+++..+.+.+..++.. .|..++.......+.+...++
T Consensus 173 l~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~ 251 (398)
T PRK10747 173 RHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW 251 (398)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 88888887764 4456777777888888888888888888888765432221 222223333334445555666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
++.+.+. .+.++.....+...+...|+.++|.+.+++..+ .+|++.... +.+....++.+++.+..++..+.. +
T Consensus 252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~--~~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~-P 325 (398)
T PRK10747 252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLK--RQYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQH-G 325 (398)
T ss_pred HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHH--HHhhccCCChHHHHHHHHHHHhhC-C
Confidence 6665443 355777888888888899999999999988887 355654332 233345588888999998888752 4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
-|+..+..++..|.+.|++++|.+.|+++++.. |+...+..++.++.+.|+.++|.+.
T Consensus 326 ~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~----------------------P~~~~~~~La~~~~~~g~~~~A~~~ 383 (398)
T PRK10747 326 DTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR----------------------PDAYDYAWLADALDRLHKPEEAAAM 383 (398)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----------------------CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 456677888899999999999999999998864 7788888899999999999999999
Q ss_pred HHHHHhC
Q 006396 631 AAVMIKS 637 (647)
Q Consensus 631 ~~~~~~~ 637 (647)
+++.+..
T Consensus 384 ~~~~l~~ 390 (398)
T PRK10747 384 RRDGLML 390 (398)
T ss_pred HHHHHhh
Confidence 8887653
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-13 Score=133.14 Aligned_cols=289 Identities=12% Similarity=0.032 Sum_probs=186.8
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc--chHHHHHHHHhcCCHHHH
Q 006396 320 EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV--TFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 320 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a 397 (647)
..|+++.|++.+....+.. +.+...+-....+..+.|+.+.|.+.+.+..+.. |+.. ........+...|+++.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~~-~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~--p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHA-AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA--GNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcCchHHHHHHHHHHHHCCCHHHH
Confidence 3455555555555444432 1122233344556667788888888887776543 3332 223346667778888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHHH---HHHhcCCHHHHHHHHHH
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYT-VVIK---GLCKQWKLQEAVQLLED 473 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~---~~~~~g~~~~a~~~~~~ 473 (647)
...++.+.+.. +-+...+..+...+...|++++|.+.+..+.+.+.. +...+. .-.. .....+..+++.+.+..
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~ 250 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLN 250 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 88888877764 445667777778888888888888888888777543 322221 1111 11222333333445555
Q ss_pred HHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 474 MYVIG---VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSAT---YNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 474 ~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.+.. .+.+...+..+...+...|+.++|.+.+++..+. .|+... ...........++.+.+.+.+++..+.
T Consensus 251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~ 328 (409)
T TIGR00540 251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN 328 (409)
T ss_pred HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence 54432 1237778888888889999999999999998884 344321 112222233457788888888888875
Q ss_pred CCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHH
Q 006396 548 NISLTK--VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLG 625 (647)
Q Consensus 548 ~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 625 (647)
.+.|+ ....++++.+.+.|++++|.++|+++.... ..|+.+.+.+++..+.+.|+.+
T Consensus 329 -~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~--------------------~~p~~~~~~~La~ll~~~g~~~ 387 (409)
T TIGR00540 329 -VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACK--------------------EQLDANDLAMAADAFDQAGDKA 387 (409)
T ss_pred -CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhh--------------------cCCCHHHHHHHHHHHHHcCCHH
Confidence 24445 566788999999999999999999543322 3578888889999999999999
Q ss_pred HHHHHHHHHHh
Q 006396 626 SVFELAAVMIK 636 (647)
Q Consensus 626 ~A~~~~~~~~~ 636 (647)
+|.+++++.+.
T Consensus 388 ~A~~~~~~~l~ 398 (409)
T TIGR00540 388 EAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHH
Confidence 99999998753
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-12 Score=120.16 Aligned_cols=497 Identities=11% Similarity=0.015 Sum_probs=324.4
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
+..-+..+++-+..+.++..|.-+-+++...+. |+..-..+..++.-.|++++|..+...-.- ...|..+......
T Consensus 15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~~--dp~d~~~~aq~l~~~~~y~ra~~lit~~~l--e~~d~~cryL~~~ 90 (611)
T KOG1173|consen 15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLTN--DPADIYWLAQVLYLGRQYERAAHLITTYKL--EKRDIACRYLAAK 90 (611)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccC--ChHHHHHHHHHHHhhhHHHHHHHHHHHhhh--hhhhHHHHHHHHH
Confidence 344566677777778888888888888877653 344444567777778888888877765533 2457777777788
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
++.+..++++|..++..... .-++..+..-= + ...-+.+.+. +.... ......+-.-...|....++++
T Consensus 91 ~l~~lk~~~~al~vl~~~~~---~~~~f~yy~~~-~-~~~l~~n~~~----~~~~~--~~essic~lRgk~y~al~n~~~ 159 (611)
T KOG1173|consen 91 CLVKLKEWDQALLVLGRGHV---ETNPFSYYEKD-A-ANTLELNSAG----EDLMI--NLESSICYLRGKVYVALDNREE 159 (611)
T ss_pred HHHHHHHHHHHHHHhcccch---hhcchhhcchh-h-hceeccCccc----ccccc--cchhceeeeeeehhhhhccHHH
Confidence 88888888888888774311 11111111000 0 0000011111 01111 1111222223345666778889
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC----CCcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 257 ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRIS----PNSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
|...|++.... |...+..+...-.. ..-.+.+.++.+...... .+......+.........-+.....-+
T Consensus 160 ar~~Y~~Al~~----D~~c~Ea~~~lvs~--~mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~ 233 (611)
T KOG1173|consen 160 ARDKYKEALLA----DAKCFEAFEKLVSA--HMLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNE 233 (611)
T ss_pred HHHHHHHHHhc----chhhHHHHHHHHHH--HhcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCc
Confidence 99999887754 44444433222111 111121222222211100 011111111111100000000000000
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 006396 333 SLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPS 412 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 412 (647)
...-.+...+......-.+-+...+++.+..++++.+.+.. ++....+..-|.++...|+..+-..+=.++.+. .|..
T Consensus 234 ~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~ 311 (611)
T KOG1173|consen 234 DESLIGLAENLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSK 311 (611)
T ss_pred hhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCC
Confidence 00011123355666667778888999999999999999874 456667777777888899988887777777765 3667
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
+.+|-++...|.-.|...+|.+.|....... +.=...|-.....+.-.|..++|+..+..+.+. ++-...-+.-+.--
T Consensus 312 a~sW~aVg~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgme 389 (611)
T KOG1173|consen 312 ALSWFAVGCYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGME 389 (611)
T ss_pred CcchhhHHHHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHH
Confidence 8899999999999999999999999877643 223457888899999999999999999888774 22222223345566
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC----CHHHHHHHHHHHHh
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH--NISL----TKVAYTTIIKAHCA 565 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~----~~~~~~~l~~~~~~ 565 (647)
|.+.++++.|.++|..+.. +-| |+...+.++-.....+.+.+|..+|+..+.. .+.+ -..+++.++.+|.+
T Consensus 390 y~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 390 YMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRK 467 (611)
T ss_pred HHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHH
Confidence 8889999999999999988 555 6888999988888899999999999998831 0111 23468899999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDK 643 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 643 (647)
.+.+++|+..+++++... |.+..++..++-+|...|+++.|.+.+.+++... ||.
T Consensus 468 l~~~~eAI~~~q~aL~l~---------------------~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n 522 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLS---------------------PKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDN 522 (611)
T ss_pred HhhHHHHHHHHHHHHHcC---------------------CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--Ccc
Confidence 999999999999999987 8899999999999999999999999999998854 554
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.7e-14 Score=135.66 Aligned_cols=290 Identities=9% Similarity=0.033 Sum_probs=233.1
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCccchHHHHHHHHhcCCHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI--SPSIVTFNSLIYGFCKNGKVADAR 398 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~ 398 (647)
.-...+|...|..+... +.....+...+..+|...+++++|.++|+.+.+..+ --+.++|+..+..+-+ +-+.
T Consensus 332 ~y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~L 406 (638)
T KOG1126|consen 332 QYNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHH
Confidence 34567888888884443 344557888899999999999999999999887532 1256677777765532 2223
Q ss_pred HHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 399 RLLD-TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYV 476 (647)
Q Consensus 399 ~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (647)
.++. .+... -+..+.+|-++..+|.-+++++.|++.|++..+. .| ...+|+.+..=+.....++.|...|+..+.
T Consensus 407 s~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333 23333 2667899999999999999999999999999876 34 677888888888888999999999999875
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHH
Q 006396 477 IGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVA 555 (647)
Q Consensus 477 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 555 (647)
.. +.+-..|-.+...|.+.++++.|+-.|+++++ +.| +......++..+-+.|+.++|+++++++...+ +.|+..
T Consensus 484 ~~-~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~ 559 (638)
T KOG1126|consen 484 VD-PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLC 559 (638)
T ss_pred CC-chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchh
Confidence 42 33445666788899999999999999999998 556 67888888999999999999999999999854 446667
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
-..-+..+...+++++|+..++++.+.- |.+..++..+++.|.+.|+.+.|+.-+--+.
T Consensus 560 ~~~~~~il~~~~~~~eal~~LEeLk~~v---------------------P~es~v~~llgki~k~~~~~~~Al~~f~~A~ 618 (638)
T KOG1126|consen 560 KYHRASILFSLGRYVEALQELEELKELV---------------------PQESSVFALLGKIYKRLGNTDLALLHFSWAL 618 (638)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHhC---------------------cchHHHHHHHHHHHHHHccchHHHHhhHHHh
Confidence 7777888999999999999999999876 7788999999999999999999999999999
Q ss_pred hCCCCCCC
Q 006396 636 KSGLLPDK 643 (647)
Q Consensus 636 ~~~~~~~~ 643 (647)
+.+|++..
T Consensus 619 ~ldpkg~~ 626 (638)
T KOG1126|consen 619 DLDPKGAQ 626 (638)
T ss_pred cCCCccch
Confidence 98887765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.9e-12 Score=108.49 Aligned_cols=484 Identities=12% Similarity=0.059 Sum_probs=255.0
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
.-+....++..|+.+++-....+-.-...+-.-++.++.+.|++++|...+..+.... .++...+..|.-.+.-.|.+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~ 108 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI 108 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence 3455566777777777665543322222223334455566777777777776666543 455556666666666667777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
+|..+.... +.++-.-..++....+.++-++-..+.+.+... ..--.+|.......-.+.+|++++..++
T Consensus 109 eA~~~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL 178 (557)
T KOG3785|consen 109 EAKSIAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVL 178 (557)
T ss_pred HHHHHHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 776665544 223444445555555666655555555544321 1223344444445555666677766666
Q ss_pred hCCCCcCcccHHH-HHHHHHhcCChhHHHHHHHHHHHCCCCCCHh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc
Q 006396 231 SQGFKLNVIAYSV-LLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS 308 (647)
Q Consensus 231 ~~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 308 (647)
..+ |+-...|. +.-+|.+..-++-+.++++-.... -||+. ..+..+....+.=+-..|++-.+.+...+-..
T Consensus 179 ~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~-- 252 (557)
T KOG3785|consen 179 QDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE-- 252 (557)
T ss_pred hcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc--
Confidence 542 23333333 233445555556666666555443 23322 22222222222211122222222222221000
Q ss_pred ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCccchHH
Q 006396 309 FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK-----LGNIGEAVQLYRQLIEKRISPSIVTFNS 383 (647)
Q Consensus 309 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 383 (647)
| ..+.-.++ -.+-+.|++++--+.+. -| ..-..
T Consensus 253 -------------------------------------~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IP--EARlN 290 (557)
T KOG3785|consen 253 -------------------------------------Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IP--EARLN 290 (557)
T ss_pred -------------------------------------c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--Ch--Hhhhh
Confidence 0 00111111 12334555555544443 11 12223
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhCCCCCCHH-HHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN-------IQRLLALLQEMETKAIGPTHV-TYTVVI 455 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~-~~~~l~ 455 (647)
++-.|.+.+++.+|..+.+++.. ..|-......++. ...|+ ..-|...|+..-+.+..-|.. --.++.
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~--aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmA 366 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVF--AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMA 366 (557)
T ss_pred heeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHH--HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHH
Confidence 44446667777777666665542 1233333333222 22222 233444444433332221111 122344
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
..+.-..++++++..+..+..--...|...+ .+..+++..|++.+|+++|-.+....++.+..-...|.++|...+.++
T Consensus 367 s~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~ 445 (557)
T KOG3785|consen 367 SYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQ 445 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCch
Confidence 4444456778888888777765334444444 578888999999999999988876444444444566778999999999
Q ss_pred hHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh-------hHHHHhhhhCCCCCC
Q 006396 536 NADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT-------KSFFCMMLSNGFPPD 607 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~ 607 (647)
.|+.++-++. .+.+.. ..-.++.-|.+.+.+--|.+.|+.+...+ |+++.|. .+++.....+..|.-
T Consensus 446 lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~~~~~~~p 520 (557)
T KOG3785|consen 446 LAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLANHKTDPIP 520 (557)
T ss_pred HHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHcCCCCCCc
Confidence 9888776553 223333 34456688899999988888888887765 4444443 345555544444445
Q ss_pred HHHHHHHHHHHHcCCC
Q 006396 608 QEICEVMLIAFHQGGD 623 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~ 623 (647)
......++..+...++
T Consensus 521 ~~~~rEVvhllr~~~n 536 (557)
T KOG3785|consen 521 ISQMREVVHLLRMKPN 536 (557)
T ss_pred hhHHHHHHHHHHhCCC
Confidence 6667777777777665
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.9e-13 Score=131.77 Aligned_cols=295 Identities=12% Similarity=0.009 Sum_probs=205.3
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHH-HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 31 IQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIV-IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 31 ~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
..+...++. ..|+++.|.+.+....... +++..+..+ .....+.|+++.|...|.++.+..+.+...........+
T Consensus 86 ~~~~~gl~a~~eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~ 163 (398)
T PRK10747 86 KQTEQALLKLAEGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ 163 (398)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence 345555666 5688888888777765422 223333333 445578888888888888887754332222323446678
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA-------ITYSILAKGFHLL 181 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 181 (647)
...|+++.|...++++.+.. +.++.....+...|.+.|++++|.+++..+.+.+..++. .+|..++......
T Consensus 164 l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 164 LARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888775 556777888888888888888888888888876543222 1334444444455
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
.+.+...++++.+.+. .+.++.....+...+...|+.++|.++++...+. .++.. ..++.+....++.+++.+..
T Consensus 243 ~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~ 317 (398)
T PRK10747 243 QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVL 317 (398)
T ss_pred cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHH
Confidence 5566666666666443 2335667778888888888888888888888774 33332 22334444568888888888
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
+...+.. +-|...+..+...+.+.+++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++.+...
T Consensus 318 e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 318 RQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 8887763 235556778888888888888888888888875 67888878888888888888888888887654
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.6e-10 Score=106.56 Aligned_cols=593 Identities=12% Similarity=0.047 Sum_probs=367.9
Q ss_pred HHhcCChhhHHHHHHHHHhCCC-CcCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDL-KVSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAI 83 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 83 (647)
+..++++...+...+.+++..+ .++..+...+.- ..|+.++|....+..+..++ .+...|+.++-.+....++++|+
T Consensus 17 ~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~-~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 17 CYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL-KSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCc-ccchhHHHHHHHHhhhhhHHHHH
Confidence 4567888888888899887632 356555555555 78999999999998887555 78889999999999999999999
Q ss_pred HHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 006396 84 LFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG 163 (647)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 163 (647)
..|+.++..+. .|..+|.-+.-.-++.++++.....-.+.++.. +..-..|..++.++.-.|++..|..++++..+..
T Consensus 96 Kcy~nAl~~~~-dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~ 173 (700)
T KOG1156|consen 96 KCYRNALKIEK-DNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQ 173 (700)
T ss_pred HHHHHHHhcCC-CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999998653 367789888888889999998888877777763 3445578888888889999999999999998764
Q ss_pred -CCCChhhHHHHH------HHHHhcCChhhHHHHHHHHHhcCCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006396 164 -VEPDAITYSILA------KGFHLLSQISGAWKVIQKLLIKGSDPDIVT-YTVLICGYCQIGNVEEGLKLREVMLSQGFK 235 (647)
Q Consensus 164 -~~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (647)
..|+...+.... ......|.++.|++.+...... ..|... -..-...+.+.+++++|..++..++.. .
T Consensus 174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n 249 (700)
T KOG1156|consen 174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N 249 (700)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence 246666655433 3345677888888777665432 112222 234456788999999999999999988 3
Q ss_pred cCcccHHHHH-HHHHhcCChhHHH-HHHHHHHHCCCCCCHhhHHHH-HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHH
Q 006396 236 LNVIAYSVLL-SSMCKSGRIDEAL-GLLYEMEAVGLKPDLVTYSIL-IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHG 312 (647)
Q Consensus 236 ~~~~~~~~l~-~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 312 (647)
||...|...+ .++.+..+.-++. .+|....+. .|....-..+ +.......-.+...+++..+.+.|+++--.
T Consensus 250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~--- 324 (700)
T KOG1156|consen 250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFK--- 324 (700)
T ss_pred chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhh---
Confidence 5555555544 4443333333344 666665543 2211111111 111111222344455666677777655332
Q ss_pred HHHHHHhhcCCHHHHHHHHHHH----HHcC----------CCCcHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 313 AILLGLCEKEMITEARMYFDSL----IMSN----------CIQDVVLY--NIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 313 ~l~~~~~~~~~~~~a~~~~~~~----~~~~----------~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
.+...|-.....+-.+++.-.+ ...+ -+|....| .-++..+-..|+++.|...++..+++ .|
T Consensus 325 dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TP 402 (700)
T KOG1156|consen 325 DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TP 402 (700)
T ss_pred hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--Cc
Confidence 2222222211111111111111 1111 14444444 44677788899999999999998875 23
Q ss_pred C-ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH------
Q 006396 377 S-IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV------ 449 (647)
Q Consensus 377 ~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------ 449 (647)
+ +..|..-.+.+...|+++.|...++...+.+ .+|...-.--.....+..+.++|.++.....+.|. +..
T Consensus 403 TliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~~~~L~~m 479 (700)
T KOG1156|consen 403 TLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GAVNNLAEM 479 (700)
T ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--chhhhHHHh
Confidence 2 3445555688888999999999999988765 55555444666777788999999999988887763 222
Q ss_pred --HHHHH--HHHHHhcCCHHHHHHHHHHHHHcC--C-------------CCCHHHHHHHHHHHHhcCC-------HHHHH
Q 006396 450 --TYTVV--IKGLCKQWKLQEAVQLLEDMYVIG--V-------------TPDQITYNTIIRSFCKCKD-------LRKAF 503 (647)
Q Consensus 450 --~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~--~-------------~~~~~~~~~l~~~~~~~~~-------~~~A~ 503 (647)
.|-.+ ..+|.+.|++..|++-|..+.+.- . ..+..+|..++...-...+ ...|+
T Consensus 480 qcmWf~~E~g~ay~r~~k~g~ALKkfh~i~k~~~~~~~dqfDfhtyc~rk~tlrsYv~ll~~~d~L~~~p~y~~Aa~~Ai 559 (700)
T KOG1156|consen 480 QCMWFQLEDGEAYLRQNKLGLALKKFHEIEKHYKTWSEDQFDFHTYCMRKGTLRSYVELLEWEDNLRSSPYYLRAAKGAI 559 (700)
T ss_pred hhHHHhHhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhHHHHHHhcCcHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 22222 345677778877777666554320 0 1233344444443322221 23456
Q ss_pred HHHHHHHhCC-CC-CCHHHHHHHH----HHHhhc-CChhhHHHHHHHHH---------HcCCC--CCHHHHHHHHHHHHh
Q 006396 504 QLLNQMWLHN-LE-PTSATYNILI----DGLCVN-GDLKNADCLLVSLQ---------EHNIS--LTKVAYTTIIKAHCA 565 (647)
Q Consensus 504 ~~~~~~~~~~-~~-p~~~~~~~l~----~~~~~~-g~~~~A~~~~~~~~---------~~~~~--~~~~~~~~l~~~~~~ 565 (647)
+++-.+.+.. .. +.......+- ....+. .+-.+|...-+.+. +.|.+ +|.. .++..+.+
T Consensus 560 ~iYl~l~d~p~~~~~~~~~~~~ms~e~kk~~~k~rk~~kk~~~e~~~~~~~~~~~~~s~~~~~~~~d~~---~~gekL~~ 636 (700)
T KOG1156|consen 560 EIYLRLHDSPNMYTNKADEIEKMSDEEKKIKKKQRKAKKKAKKEAKKKKDKKKKEAKSQSGKPVDIDED---PFGEKLLK 636 (700)
T ss_pred HHHHHHhcCcccccccchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCCc---chhhhHhh
Confidence 6666665521 00 1111111111 111111 11122222221111 12222 3333 33444444
Q ss_pred cCC-HHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 566 EGD-VHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 566 ~g~-~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..+ .++|..++..+...+ +.+..++..-...|.+.|++.-|.+.++++.....
T Consensus 637 t~~Pl~ea~kf~~~l~~~~---------------------~~~~~~~iL~~ely~rk~k~~l~~~~~~~~~~~~~ 690 (700)
T KOG1156|consen 637 TEDPLEEARKFLPNLQHKG---------------------KEKGETYILSFELYYRKGKFLLALACLNNAEGIHG 690 (700)
T ss_pred cCChHHHHHHHHHHHHHhc---------------------ccchhhhhhhHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 443 466888888888776 78889999999999999999999999888876544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-12 Score=116.14 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=177.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQR 431 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 431 (647)
.+.-.|+.-.|..-|+..+...+.+ ...|-.+...|...++..+....|+.....+ +.++.+|..-.+.+.-.+++++
T Consensus 335 F~fL~g~~~~a~~d~~~~I~l~~~~-~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~ 412 (606)
T KOG0547|consen 335 FHFLKGDSLGAQEDFDAAIKLDPAF-NSLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEE 412 (606)
T ss_pred hhhhcCCchhhhhhHHHHHhcCccc-chHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHH
Confidence 3445688889999999998875543 3337777888999999999999999988765 5567778888888888899999
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
|..-|+...... +.+...|..+.-+..+.++++++...|++.++. +|.-+..|+.....+...++++.|.+.|+..++
T Consensus 413 A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~ 490 (606)
T KOG0547|consen 413 AIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE 490 (606)
T ss_pred HHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh
Confidence 999999988763 334556666666677889999999999999886 677788999999999999999999999999987
Q ss_pred CCCCCC---------HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 512 HNLEPT---------SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 512 ~~~~p~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++|+ +.+.-.++..- -.+++..|..+++++.+. .|. ...+.+++..-.+.|+.++|+++|++...
T Consensus 491 --LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 491 --LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred --hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3443 22223333222 348999999999999984 454 45899999999999999999999999876
Q ss_pred cC
Q 006396 582 KG 583 (647)
Q Consensus 582 ~~ 583 (647)
..
T Consensus 566 lA 567 (606)
T KOG0547|consen 566 LA 567 (606)
T ss_pred HH
Confidence 54
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.1e-13 Score=132.23 Aligned_cols=301 Identities=11% Similarity=-0.030 Sum_probs=203.0
Q ss_pred HHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHH
Q 006396 31 IQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYC 109 (647)
Q Consensus 31 ~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (647)
..+...++. ..|+++.|.+.+.+.....+ .+...+...+.+....|++++|...+.++.+..+.+...........+.
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~~~-~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l 164 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADHAA-EPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL 164 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhcCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence 445566666 78889999888888766432 3334455667778888999999999888876543333334455577888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHH-HHHHH---HHhcCChh
Q 006396 110 KLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYS-ILAKG---FHLLSQIS 185 (647)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~ 185 (647)
..|+++.|...++.+.+.. |.++.++..+...+...|++++|.++++.+.+.+.. +...+. ....+ ....+..+
T Consensus 165 ~~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~ 242 (409)
T TIGR00540 165 AQNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMAD 242 (409)
T ss_pred HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHh
Confidence 8899999999998888875 556777888888888899999999888888887543 333231 11111 12222333
Q ss_pred hHHHHHHHHHhcCC---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCccc-HHHHHHHHHhcCChhHHHHHH
Q 006396 186 GAWKVIQKLLIKGS---DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIA-YSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 186 ~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+..+.+..+....+ ..+...+..++..+...|+.++|.++++...+......... ...........++.+.+.+.+
T Consensus 243 ~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 243 EGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred cCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 33344444444321 12666777888888888999999999888888643211111 111122223456778888888
Q ss_pred HHHHHCCCCCC-H--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 262 YEMEAVGLKPD-L--VTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 262 ~~~~~~~~~~~-~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
+...+. .|+ . ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus 323 e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 323 EKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 877765 333 3 455678888888899999999888544433467877788888888888999999888887644
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.5e-11 Score=115.57 Aligned_cols=435 Identities=14% Similarity=0.059 Sum_probs=251.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHH
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYS 242 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~ 242 (647)
+..+...|..+.-+....|+++.+.+.|++....-+. ....|..+...+...|.-..|..+++........| +...+.
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~-~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L 397 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFG-EHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL 397 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhh-hHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence 4556677777777777777887777777776654222 34567777777777777777777777766553223 223333
Q ss_pred HHHHHHH-hcCChhHHHHHHHHHHHC--CC--CCCHhhHHHHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCC
Q 006396 243 VLLSSMC-KSGRIDEALGLLYEMEAV--GL--KPDLVTYSILIRGLCKQ-----------DKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 243 ~l~~~~~-~~g~~~~a~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~ 306 (647)
.....|. +.+..++++..-.+..+. +. ......|..+.-+|... ....++++.+++..+.+ +.
T Consensus 398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d-~~ 476 (799)
T KOG4162|consen 398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFD-PT 476 (799)
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcC-CC
Confidence 3333333 345556655555554441 10 11222333333333221 11345666666666553 33
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (647)
|+.+..-+..-|...++++.|.+...+....+...+...|..+.-.+...+++..|+.+.+...+.- ..|......-++
T Consensus 477 dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~ 555 (799)
T KOG4162|consen 477 DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIH 555 (799)
T ss_pred CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhh
Confidence 4444444445566666777777777666666555566666666666666777777777666655431 111111111222
Q ss_pred HHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCC
Q 006396 387 GFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AIGPTHVTYTVVIKGLCKQWK 463 (647)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~ 463 (647)
.-..-++.+++......+... .-.+.. ...++-....+....+.-. .......++..+..-....+
T Consensus 556 i~~~~~~~e~~l~t~~~~L~~we~~~~~----------q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~- 624 (799)
T KOG4162|consen 556 IELTFNDREEALDTCIHKLALWEAEYGV----------QQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQL- 624 (799)
T ss_pred hhhhcccHHHHHHHHHHHHHHHHhhhhH----------hhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhh-
Confidence 222345555555554444321 000000 0011111111111111100 00111122222221111111
Q ss_pred HHHHHHHHHHHHHcCCC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCh
Q 006396 464 LQEAVQLLEDMYVIGVT--PD------QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDL 534 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~--~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 534 (647)
+.+..-.. +.+..+. |+ ...|......+.+.++.++|...+.+... +.| ....|...+..+...|.+
T Consensus 625 -~~~~se~~-Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~ 700 (799)
T KOG4162|consen 625 -KSAGSELK-LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQL 700 (799)
T ss_pred -hhcccccc-cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhh
Confidence 10000000 1111111 22 23456677788899999999999999877 344 578888888999999999
Q ss_pred hhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 535 KNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMT--FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++|.+.|..+... .|+ ......++.++.+.|+..-|.. ++..+++.+ |.+.++|
T Consensus 701 ~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d---------------------p~n~eaW 757 (799)
T KOG4162|consen 701 EEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD---------------------PLNHEAW 757 (799)
T ss_pred HHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC---------------------CCCHHHH
Confidence 9999999999984 555 5588999999999999988888 999999998 8899999
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 612 EVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..++..+.+.|+.++|.+-|.-+.+...
T Consensus 758 ~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 758 YYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 9999999999999999999999987543
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-16 Score=142.88 Aligned_cols=253 Identities=15% Similarity=0.091 Sum_probs=73.0
Q ss_pred hcCChhHHHHHHHHHHhCC-CCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHH
Q 006396 40 NLRHTDIMWDLYDDIKVSE-TPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAK 118 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~ 118 (647)
..|+++.|++++++..... ++.++..|..++......|++++|+..++++...+.. ++..+..++.. ...+++++|.
T Consensus 20 ~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~ 97 (280)
T PF13429_consen 20 QRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEAL 97 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccccccccc
Confidence 5556666666664433222 3345555555555555666666666666666554322 33344444444 4556666666
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 119 GLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 119 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.+++...+. .+++..+..++..+.+.++++++..+++.+.... .+.+...|..+...+.+.|+.++|.+.+++.++.
T Consensus 98 ~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~ 175 (280)
T PF13429_consen 98 KLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL 175 (280)
T ss_dssp ----------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred ccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 665555443 3344445555555556666666666666554321 2344555555556666666666666666666554
Q ss_pred CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHH
Q 006396 198 GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYS 277 (647)
Q Consensus 198 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 277 (647)
.+. |......++..+...|+.+++.++++...+.. +.++..+..+..++...|+.++|...|++..... +.|.....
T Consensus 176 ~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~ 252 (280)
T PF13429_consen 176 DPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDDPLWLL 252 (280)
T ss_dssp -TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHH
T ss_pred CCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-cccccccc
Confidence 221 34445555556666666666555555554442 3344555556666666666666666666655532 22455555
Q ss_pred HHHHHHHccCCHHHHHHHHHHH
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
.+..++...|+.++|.++..++
T Consensus 253 ~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 253 AYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHT---------------
T ss_pred cccccccccccccccccccccc
Confidence 5556666666666666655544
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.6e-13 Score=120.11 Aligned_cols=221 Identities=12% Similarity=0.109 Sum_probs=179.0
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
+.-.|+.-.+..-|+..+.....++ ..|--+..+|....+.++-+..|+...+.+ +.++.+|..-.+...-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 3457888999999999988653332 337777788999999999999999998875 45667788888888888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
..=|++.+... +.+...|..+..+..+.+.++++...|++..+. ++..+.+|+.....+..++++++|.+.|+.+++.
T Consensus 414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 99999998754 445667777777777899999999999999885 5556999999999999999999999999999973
Q ss_pred CCCCC-------HHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 548 NISLT-------KVAY--TTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 548 ~~~~~-------~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
.|. ...+ -.++. +--.+++..|..+++++++.+ |.-..++..|+...
T Consensus 492 --E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~D---------------------pkce~A~~tlaq~~ 547 (606)
T KOG0547|consen 492 --EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELD---------------------PKCEQAYETLAQFE 547 (606)
T ss_pred --ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccC---------------------chHHHHHHHHHHHH
Confidence 443 2222 12222 223389999999999999987 67788999999999
Q ss_pred HcCCCHHHHHHHHHHHHh
Q 006396 619 HQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~ 636 (647)
.+.|+.++|+++|++...
T Consensus 548 lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 548 LQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999999998764
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-10 Score=104.54 Aligned_cols=533 Identities=11% Similarity=0.099 Sum_probs=281.2
Q ss_pred HHHhcCChhhHHHHHHHHHhC-CCCcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChh
Q 006396 5 VYSRTGMVHDAVFVIAKMKEL-DLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQ 80 (647)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 80 (647)
....+|.+..-+..|++++.. -+......|...+. ..+-++-+..++++.+. .+|..-...+..+...++.+
T Consensus 111 ~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk----~~P~~~eeyie~L~~~d~~~ 186 (835)
T KOG2047|consen 111 FLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLK----VAPEAREEYIEYLAKSDRLD 186 (835)
T ss_pred HHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHh----cCHHHHHHHHHHHHhccchH
Confidence 345677777777777777754 22233344444444 66667777777777766 55555666667777777777
Q ss_pred HHHHHHHHhhcCCC------CcCHHhHHHHHHHHHhcCC---hhhHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCH
Q 006396 81 DAILFLQETAGKEF------GPSVVSLNAIMSRYCKLGF---AEVAKGLFCLMLKYGLHPD--AFSYNILIHGLCIAGSM 149 (647)
Q Consensus 81 ~a~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~---~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~ 149 (647)
+|.+.+...+.... +.+...|..+-....+.-+ --....+++.++.. .+| ...|.+|..-|.+.|.+
T Consensus 187 eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~ 264 (835)
T KOG2047|consen 187 EAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLF 264 (835)
T ss_pred HHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhh
Confidence 77777776654211 1123344444444443322 22334444444443 333 33677777777777777
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------------------hhhHHHHHHHHHhcCC--------
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----------------------ISGAWKVIQKLLIKGS-------- 199 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------------------~~~a~~~~~~~~~~~~-------- 199 (647)
++|..+|++.... -.++.-+..+..+|+...+ ++-.+.-|+.+.....
T Consensus 265 ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlL 342 (835)
T KOG2047|consen 265 EKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLL 342 (835)
T ss_pred HHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHH
Confidence 7777777776553 2344445555555543211 1111122222221110
Q ss_pred ---CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC------cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 200 ---DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN------VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 200 ---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
.-++..|..-+. +..|+..+-...+.+..+. +.|. ...|..+.+.|-..|+++.|+.+|++..+...+
T Consensus 343 RQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~ 419 (835)
T KOG2047|consen 343 RQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYK 419 (835)
T ss_pred hcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCcc
Confidence 001111111111 1223334444444444332 1111 113444455555555555555555555443221
Q ss_pred CC---HhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 006396 271 PD---LVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYN 347 (647)
Q Consensus 271 ~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 347 (647)
.- ..+|......-.+..+++.|+++++....- |.... ..+...+...++. ...+...|.
T Consensus 420 ~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v---P~~~~-----~~~yd~~~pvQ~r----------lhrSlkiWs 481 (835)
T KOG2047|consen 420 TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV---PTNPE-----LEYYDNSEPVQAR----------LHRSLKIWS 481 (835)
T ss_pred chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC---CCchh-----hhhhcCCCcHHHH----------HHHhHHHHH
Confidence 11 122333333333444455555544444321 11111 0111111111110 011345666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH-
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA-VTYTTFMNAYCE- 425 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~- 425 (647)
..++.--..|-++....+|+++++..+. ++.........+-...-++++.++|++-+..--.|+. ..|+..+.-+.+
T Consensus 482 ~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r 560 (835)
T KOG2047|consen 482 MYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR 560 (835)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence 6677777788899999999999887654 3332222333334455678888888876654334443 456666665554
Q ss_pred --cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCH
Q 006396 426 --EGNIQRLLALLQEMETKAIGPTHVTYTVVIKG--LCKQWKLQEAVQLLEDMYVIGVTPDQ--ITYNTIIRSFCKCKDL 499 (647)
Q Consensus 426 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~ 499 (647)
...++.|..+|++..+ +.+|...-+-.++-+ --+.|-...|+.+++++... +++.. ..|+..|.--...=-+
T Consensus 561 ygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv 638 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGV 638 (835)
T ss_pred hcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCC
Confidence 3468999999999988 666554433222222 23457788899999987653 34332 3456555433333334
Q ss_pred HHHHHHHHHHHhCCCCCCHHH---HHHHHHHHhhcCChhhHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSAT---YNILIDGLCVNGDLKNADCLLVSLQEHN-ISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
.....+|+++++ .-|+... .....+.=.+.|..+.|..++.-..+.. ...+...|.+.-..-.+.|+-+-
T Consensus 639 ~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT 712 (835)
T KOG2047|consen 639 PRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDT 712 (835)
T ss_pred cccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHH
Confidence 566778888887 3555333 3334455567899999999988777642 22355678888777888898443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-13 Score=113.68 Aligned_cols=219 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCH------HhHHHHHHHHHhcCChhh
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSV------VSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~g~~~~ 116 (647)
.+|.|.++|-++...++ ...++...+++.|...|..++|+.+.+...+. ||. .....+..-|...|-++.
T Consensus 50 Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 50 QPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred CcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 45666666666665332 33445555666666666666666666665542 221 134455555666666666
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHH
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA----ITYSILAKGFHLLSQISGAWKVIQ 192 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~ 192 (647)
|..+|..+...+ .--..+...|+..|-...+|++|+++.+++.+.+.++.. ..|..|...+....+++.|..++.
T Consensus 126 AE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 126 AEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 666666665543 223344555666666666666666666666554333221 113334444444555555555555
Q ss_pred HHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 193 KLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 193 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
+..+.+.+ .+..-..+.+.+...|+++.|.+.++.+.+.+..--+.+...|..+|...|+.++....+..+.+.
T Consensus 205 kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 205 KALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 55544221 233333444555555555555555555555543333344555555555555555555555555443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.8e-12 Score=111.18 Aligned_cols=287 Identities=11% Similarity=0.021 Sum_probs=183.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.|++.+|++......+.+ ......|..-.++--+.|+.+.+-.++.+..+....++....-.........|+.+.|..-
T Consensus 97 eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~ 175 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN 175 (400)
T ss_pred cCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence 344444444444433332 1123334444555666777777777777776653333444444555566667777777777
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHH-------HHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 401 LDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHV-------TYTVVIKGLCKQWKLQEAVQLLED 473 (647)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~a~~~~~~ 473 (647)
+.++.+.+ +-+........++|.+.|++..+..++..+.+.+.-.+.. +|..+++-....+..+.-...|+.
T Consensus 176 v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~ 254 (400)
T COG3071 176 VDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN 254 (400)
T ss_pred HHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence 77776654 4455666677777777777777777777777766543332 444444444444444444445554
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 006396 474 MYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
.... .+.++..-.+++.-+.++|+.++|.++..+..+.+..|+. ...-.+.+-++.+.-++..++..+. .+.++
T Consensus 255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~-h~~~p 328 (400)
T COG3071 255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQ-HPEDP 328 (400)
T ss_pred ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHh-CCCCh
Confidence 4432 3555666667777788888888888888888876555551 1122344566777767777666664 34455
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
..+.+++..|.+.+.|.+|..+|+.+++.. |+.+.|..++.++.+.|+..+|.+..++
T Consensus 329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~----------------------~s~~~~~~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 329 LLLSTLGRLALKNKLWGKASEALEAALKLR----------------------PSASDYAELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC----------------------CChhhHHHHHHHHHHcCChHHHHHHHHH
Confidence 677888888888888888888888777754 8888888888888888888888888887
Q ss_pred HHhC
Q 006396 634 MIKS 637 (647)
Q Consensus 634 ~~~~ 637 (647)
.+-.
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 7643
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.4e-12 Score=109.41 Aligned_cols=293 Identities=14% Similarity=0.089 Sum_probs=221.6
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCH
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD---AFSYNILIHGLCIAGSM 149 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~ 149 (647)
++-..+.++|.+.|-.+.+..+. +..+...+...|.++|..+.|+.+.+.+..+.-.+. ..+...|..-|...|-+
T Consensus 45 fLLs~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 45 FLLSNQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred HHhhcCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 45577999999999999985432 456788899999999999999999999987531111 22445677788899999
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc----hHHHHHHHHHhcCChHHHHHH
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV----TYTVLICGYCQIGNVEEGLKL 225 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~ 225 (647)
+.|..+|..+...+ .--......|+.+|-...++++|+++-+++.+.+.++... .|..+...+....+++.|..+
T Consensus 124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~ 202 (389)
T COG2956 124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL 202 (389)
T ss_pred hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 99999999997753 3355678889999999999999999999998876554432 466677777778899999999
Q ss_pred HHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 006396 226 REVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRIS 305 (647)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 305 (647)
+.+..+.+.+ .+.+-..+.+.....|+++.|.+.++.+.+.+..--..+...+..+|...|+.++....+..+.+. .
T Consensus 203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~--~ 279 (389)
T COG2956 203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET--N 279 (389)
T ss_pred HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--c
Confidence 9999887543 556666778889999999999999999998755545567788889999999999999999998876 3
Q ss_pred CCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHC
Q 006396 306 PNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKL---GNIGEAVQLYRQLIEK 372 (647)
Q Consensus 306 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~ 372 (647)
+.......+........-.+.|..++.+-... .|+...+..++...... |...+....+++|+..
T Consensus 280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge 347 (389)
T COG2956 280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGE 347 (389)
T ss_pred CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHH
Confidence 44444444444444555566666555554443 47888888888776543 3456666677777654
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.3e-12 Score=112.46 Aligned_cols=298 Identities=12% Similarity=-0.006 Sum_probs=210.7
Q ss_pred CHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 30 SIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 30 ~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
...+-..++. ..|++..|+++..+..+++. ...-.|..-+.+.-+.|+.+.+=.++.++.+....++........+..
T Consensus 85 ~~~~~egl~~l~eG~~~qAEkl~~rnae~~e-~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 85 RKALNEGLLKLFEGDFQQAEKLLRRNAEHGE-QPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHhhhcCc-chHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 4455566666 77888888888888766554 333455555666778888888888888887754455666777777888
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCh-------hhHHHHHHHHHhc
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDA-------ITYSILAKGFHLL 181 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~ 181 (647)
..+|+++.|..-.+++.+.+ +.++........+|.+.|++.....++..+.+.|.-.+. .+|..+++-....
T Consensus 164 l~~~d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~ 242 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDD 242 (400)
T ss_pred HhCCCchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhcc
Confidence 88888888888888888776 566777888888888888888888888888887654433 3466666666666
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
+..+.-...++..... ..-++..-..++.-+.+.|+.++|.++.++..+.+..|+ -...-.+.+.++...-.+..
T Consensus 243 ~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~ 317 (400)
T COG3071 243 NGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAA 317 (400)
T ss_pred ccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHH
Confidence 6666655566655443 233555666777778888888888888888888766554 22223345566666666666
Q ss_pred HHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 262 YEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 262 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
++..+.. +.+...+.++...|.+.+.|.+|...|+...+. .|+..++..+...+.+.|+..+|.+..+.....
T Consensus 318 e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~ 390 (400)
T COG3071 318 EKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL 390 (400)
T ss_pred HHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 6655431 224466778888888888888888888877664 678888888888888888888888887776643
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.5e-13 Score=127.02 Aligned_cols=288 Identities=15% Similarity=0.100 Sum_probs=221.5
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL--HPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
+-.+|+..|...... ...+.++...++++|...+++++|+.+|+.+.+... ..+..+|...+-.+-+. + +.--+
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~--v-~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE--V-ALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh--H-HHHHH
Confidence 567899999985544 333557888999999999999999999999987631 12456777766544221 1 11122
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGF 234 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 234 (647)
-+.+... .+..+.+|.++..+|.-+++.+.|++.|++.++. +| ...+|+.+..-+....++|.|...|+..+..+.
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence 2333332 3567899999999999999999999999999876 44 567888888889999999999999999987643
Q ss_pred CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 235 KLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 235 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
. +-.+|..+...|.+.++++.|+-.|++..+.+.. +......+...+.+.|+.++|+++++++.... +.++..-...
T Consensus 487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHR 563 (638)
T ss_pred h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHH
Confidence 2 4456667888999999999999999999887533 66667777888889999999999999998763 3455555556
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
...+...+++++|+..++++...- +.+..++..+...|.+.|+.+.|+.-|..+.+..+++
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 677778889999999999888753 4566778888889999999999999998888765544
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.5e-13 Score=117.67 Aligned_cols=239 Identities=11% Similarity=0.009 Sum_probs=207.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHh
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCK 460 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~ 460 (647)
..+..+|.+.|.+.+|.+.++..... .|-+.||..+-..|.+..++..|+.++.+-.+. .|-.+| ...+.+.+..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHH
Confidence 56789999999999999999988876 677889999999999999999999999998876 455555 4556778888
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++.++|.++++...+.. +.+......+...|.-.++.+-|++++.+++..|+ .++..|+.+.-+|...++++-++.-
T Consensus 303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence 999999999999999864 66777788888888889999999999999999874 5789999999999999999999999
Q ss_pred HHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 541 LVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 541 ~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
|++++..-..|+ ..+|..+.......||+..|.+.|+-++..+ +.+.+.++.|+-.-
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d---------------------~~h~ealnNLavL~ 439 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD---------------------AQHGEALNNLAVLA 439 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC---------------------cchHHHHHhHHHHH
Confidence 999997544454 4489999999999999999999999999887 77789999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCCCCCCCCC
Q 006396 619 HQGGDLGSVFELAAVMIKSGLLPDKFLIN 647 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~n 647 (647)
.+.|+.++|+.++..+....|..-.++.|
T Consensus 440 ~r~G~i~~Arsll~~A~s~~P~m~E~~~N 468 (478)
T KOG1129|consen 440 ARSGDILGARSLLNAAKSVMPDMAEVTTN 468 (478)
T ss_pred hhcCchHHHHHHHHHhhhhCccccccccc
Confidence 99999999999999998876655455544
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.3e-11 Score=105.63 Aligned_cols=456 Identities=13% Similarity=0.085 Sum_probs=250.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+.-+....++..|+.+++-....+-.....+-..+...+...|++++|...+..+.+. ..++...+..|...+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHHHHH
Confidence 4445556667777777666554331111122223334455667777777777666554 345556666666666666666
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
.+|..+-.+..+ ++.....++....+.++-++-..+.+.+... ...-..+.......-.+.+|+++++.+
T Consensus 108 ~eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrv 177 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRV 177 (557)
T ss_pred HHHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 666665554321 2333344444445555555544444443321 112223333333334555666666655
Q ss_pred HHCCCCCCHhhHHH-HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH
Q 006396 265 EAVGLKPDLVTYSI-LIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDV 343 (647)
Q Consensus 265 ~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 343 (647)
... .|+-...+. +.-+|.+..-++-+.++++-..+. -|| ++
T Consensus 178 L~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pd----------------------------------St 219 (557)
T KOG3785|consen 178 LQD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPD----------------------------------ST 219 (557)
T ss_pred Hhc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCC----------------------------------cH
Confidence 543 222222222 222334444455555554444433 122 22
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK-----NGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
...|..+....+.-+-..|.+-.+.+.+.+.. .|- .+.-.++ -++-+.|.+++-.+... -|. .-..
T Consensus 220 iA~NLkacn~fRl~ngr~ae~E~k~ladN~~~----~~~-f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlN 290 (557)
T KOG3785|consen 220 IAKNLKACNLFRLINGRTAEDEKKELADNIDQ----EYP-FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLN 290 (557)
T ss_pred HHHHHHHHHHhhhhccchhHHHHHHHHhcccc----cch-hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhh
Confidence 23333332223322233333334444332111 111 1222222 23457788877766643 333 2344
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-H----HhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006396 419 FMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG-L----CKQWKLQEAVQLLEDMYVIGVTPD-QITYNTIIRS 492 (647)
Q Consensus 419 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~----~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~ 492 (647)
++-.|.+.++.++|..+.+++... .|-......+..+ + ......+-|.+.|+-.-+.+...| ..--.++..+
T Consensus 291 L~iYyL~q~dVqeA~~L~Kdl~Pt--tP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~ 368 (557)
T KOG3785|consen 291 LIIYYLNQNDVQEAISLCKDLDPT--TPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY 368 (557)
T ss_pred heeeecccccHHHHHHHHhhcCCC--ChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH
Confidence 566688999999999988876532 2333332222221 1 112234456666655544443333 2334456666
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
+.-..++++.+.+++.+...-...|...+ .+.++++..|++.+|+++|-++....++.+..-...++++|.+.|.++.|
T Consensus 369 fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lA 447 (557)
T KOG3785|consen 369 FFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLA 447 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHH
Confidence 66778899999999988874333344444 57889999999999999999887644433333446777899999999998
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCC
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDK 643 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 643 (647)
.+++-++-..+ ........++..|++.|.+=-|.+.+..+...+|.|+.
T Consensus 448 W~~~lk~~t~~----------------------e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~pEn 496 (557)
T KOG3785|consen 448 WDMMLKTNTPS----------------------ERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTPEN 496 (557)
T ss_pred HHHHHhcCCch----------------------hHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCccc
Confidence 77665543211 22445567779999999999999999999888888753
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.8e-10 Score=107.34 Aligned_cols=471 Identities=14% Similarity=0.110 Sum_probs=260.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 136 YNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 136 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
|..++..| ..+++...+++.+.+.+. .+-...+.....-.+...|+.++|...........+. +.++|..+.-.+..
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~-S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLK-SHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccCcc-cchhHHHHHHHHhh
Confidence 33344433 345666666666666553 3333444444444445556666666666665554332 45566666666666
Q ss_pred cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQL 295 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 295 (647)
..++++|.+.|+.....+.. |...+..+.-.-++.++++..........+.. +.....|...+.++.-.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66677777777666665422 55556655555566666666665555555431 22344566666666666777777777
Q ss_pred HHHHHhCCC-CCCcccHHHHH------HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 296 YNEMCSKRI-SPNSFAHGAIL------LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQ 368 (647)
Q Consensus 296 ~~~~~~~~~-~~~~~~~~~l~------~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (647)
++...+... .|+...+.... ....+.|..+.|.+.+......- ......-..-...+.+.+++++|..++..
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i-~Dkla~~e~ka~l~~kl~~lEeA~~~y~~ 244 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQI-VDKLAFEETKADLLMKLGQLEEAVKVYRR 244 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHH-HHHHHHhhhHHHHHHHHhhHHhHHHHHHH
Confidence 766665431 23333332221 22344555566655554433211 11122223345567778888888888888
Q ss_pred HHHCCCCCCccchHHHHH-HHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCC
Q 006396 369 LIEKRISPSIVTFNSLIY-GFCKNGKVADAR-RLLDTIKLHGLEPSAVTYTTF-MNAYCEEGNIQRLLALLQEMETKAIG 445 (647)
Q Consensus 369 ~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~ 445 (647)
++.. .||...|...+. ++.+..+..++. .+|....+. .|.......+ ++......-.+..-.++..+.+.|++
T Consensus 245 Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~--y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p 320 (700)
T KOG1156|consen 245 LLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSEK--YPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVP 320 (700)
T ss_pred HHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc--CcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCC
Confidence 8876 345555554443 332333333333 556555543 1111111111 11111122234445556666677754
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----cC----------CCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYV----IG----------VTPDQITY--NTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~----------~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
+--. .+...|-.-...+-..++...+.. .| -+|....| ..++..|-+.|+++.|..+++.+
T Consensus 321 ~vf~---dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~A 397 (700)
T KOG1156|consen 321 SVFK---DLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLA 397 (700)
T ss_pred chhh---hhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 4322 232222221111111111111111 10 14555444 45667788999999999999999
Q ss_pred HhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccc
Q 006396 510 WLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISI 588 (647)
Q Consensus 510 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 588 (647)
+. ..|+ +..|..-.+.+...|++++|..++.+..+.+ .+|...-..-+.-..++.+.++|..+.....+.|. +.
T Consensus 398 Id--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~--~~ 472 (700)
T KOG1156|consen 398 ID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF--GA 472 (700)
T ss_pred hc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc--ch
Confidence 88 4566 6777777889999999999999999999865 45555555777888899999999999999988773 22
Q ss_pred hhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 589 RDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
......+.|++ ....-+.+|.+.|++.+|++=+..+
T Consensus 473 ~~~L~~mqcmW----------f~~E~g~ay~r~~k~g~ALKkfh~i 508 (700)
T KOG1156|consen 473 VNNLAEMQCMW----------FQLEDGEAYLRQNKLGLALKKFHEI 508 (700)
T ss_pred hhhHHHhhhHH----------HhHhhhHHHHHHHHHHHHHHHHhhH
Confidence 22222222222 1123357777888887776554443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.3e-10 Score=108.30 Aligned_cols=539 Identities=16% Similarity=0.091 Sum_probs=288.0
Q ss_pred HhcCChh--hHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHH---HHHhcCChhH
Q 006396 7 SRTGMVH--DAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVID---GLCQQSRLQD 81 (647)
Q Consensus 7 ~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~g~~~~ 81 (647)
.-+|..+ .+...|+.++.++ ...+..+-.+.++...+..-+......+.+.++..+-.+-. .|...|+.++
T Consensus 208 ~t~~~~~~~s~~~~l~~vl~~~----~~~~~~Lw~~~~~~~~~i~s~~~~l~~~w~~~~l~ka~l~~~~~~f~~~~~~Ee 283 (799)
T KOG4162|consen 208 ATQGSKDTESGALKLQEVLSRA----VELLPILWKKLSGPKEAIKSYRRALLRSWSLDPLTKARLYKGFALFLPKSGQEE 283 (799)
T ss_pred hhccCcchHHHHHHHHHHHHHH----HHHhHHHhcCCCCchHHHHhhhHHhhcccccchhHHHHHhhcccccCCCCcHHH
Confidence 3344444 5666666666652 22233333366777777777777776665555544433322 3445555555
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
+ .+...+.+. .-|...+...++.. .-.+.++....+.-++.+|..+.-+....|+++.+.+.|++...
T Consensus 284 ~-~Lllli~es-~i~Re~~~d~ilsl----------m~~~~k~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~ 351 (799)
T KOG4162|consen 284 V-ILLLLIEES-LIPRENIEDAILSL----------MLLLRKLRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALP 351 (799)
T ss_pred H-HHHHHHHhh-ccccccHHHHHHHH----------HHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 5 222222111 11111111111100 00111222222233556666666666677777777777777654
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcch-HHHHHHHHH-hcCChHHHHHHHHHHHhC--C--CC
Q 006396 162 HGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVT-YTVLICGYC-QIGNVEEGLKLREVMLSQ--G--FK 235 (647)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~-~~~~~~~a~~~~~~~~~~--~--~~ 235 (647)
. .-.....|..+...+...|....|..+++........|+..+ +......|. +.+.+++++.+..++... + -.
T Consensus 352 ~-~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~ 430 (799)
T KOG4162|consen 352 F-SFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSH 430 (799)
T ss_pred h-hhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhh
Confidence 3 223456677777777777777777777766655433343322 222223333 335566666555555441 1 11
Q ss_pred cCcccHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 006396 236 LNVIAYSVLLSSMCKS-----------GRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRI 304 (647)
Q Consensus 236 ~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 304 (647)
..+..|..+.-+|... ....++.+.+++..+.+.. |......+.--|+..++++.|.+..++..+-+-
T Consensus 431 l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~ 509 (799)
T KOG4162|consen 431 LKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNR 509 (799)
T ss_pred hhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcC
Confidence 1233444444444321 1234566666666655322 222333333445666777777777777766544
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
..+...+..+...+...+++.+|+.+.+.....- ..|......-++.-...++.+++......++.. .. +.
T Consensus 510 ~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~-we-~~------ 580 (799)
T KOG4162|consen 510 GDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKIHIELTFNDREEALDTCIHKLAL-WE-AE------ 580 (799)
T ss_pred CccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhhhhhhhcccHHHHHHHHHHHHHH-HH-hh------
Confidence 4555666666666777777777777777665431 111111122223333456677776666655532 00 00
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCC--CCC------HHHH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLH--GLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKAI--GPT------HVTY 451 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~--~~~------~~~~ 451 (647)
......++-....+....+.-. .......++..+.......+ ..+.. +..... .|+ ...|
T Consensus 581 -~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~------Lp~s~~~~~~~~~~~~~~~lw 653 (799)
T KOG4162|consen 581 -YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK------LPSSTVLPGPDSLWYLLQKLW 653 (799)
T ss_pred -hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc------cCcccccCCCCchHHHHHHHH
Confidence 0001111112222222222110 00111112211111111000 01111 111111 122 2244
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhh
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCV 530 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 530 (647)
......+.+.++.++|...+.+..+.. +.....|......+...|...+|.+.|..... +.|+ +.+..+++.++.+
T Consensus 654 llaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle 730 (799)
T KOG4162|consen 654 LLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLE 730 (799)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHH
Confidence 555566777888888888888877653 55666777777778888999999999998887 5664 7788899999999
Q ss_pred cCChhhHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 531 NGDLKNADC--LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 531 ~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|+...|.. ++..+.+.+ +.+...|..++..+...|+.+.|.+.|..+.+..
T Consensus 731 ~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 731 LGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred hCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 998888877 888888864 5577799999999999999999999999888765
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6e-11 Score=115.53 Aligned_cols=531 Identities=11% Similarity=0.059 Sum_probs=285.4
Q ss_pred HHHHHhCCCCcCHHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCC
Q 006396 19 IAKMKELDLKVSIQTYNSLLY---NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFG 95 (647)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~ll~---~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 95 (647)
+-.+...|+.|+..+|.+++. ..|+.+.|- +|.-|...+.|.....+..++......|+.+.+. .
T Consensus 13 la~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------e 80 (1088)
T KOG4318|consen 13 LALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------E 80 (1088)
T ss_pred HHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------C
Confidence 334556688899999999999 667888777 8888877777777778888888888888877665 4
Q ss_pred cCHHhHHHHHHHHHhcCChhh---HHHHHHHHHh----CCCCCCHHHHH--------------HHHHHHHhcCCHHHHHH
Q 006396 96 PSVVSLNAIMSRYCKLGFAEV---AKGLFCLMLK----YGLHPDAFSYN--------------ILIHGLCIAGSMEEALE 154 (647)
Q Consensus 96 ~~~~~~~~~~~~~~~~g~~~~---a~~~~~~~~~----~~~~~~~~~~~--------------~l~~~~~~~~~~~~a~~ 154 (647)
|...+|..+..+|...|+... ..+.++.+.. .|+......+- ..+......|-++.+.+
T Consensus 81 p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 81 PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLK 160 (1088)
T ss_pred CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHH
Confidence 677889999999999998654 3332222221 12111111111 11112222333444444
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHh-cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 155 FTNDMGRHGVEPDAITYSILAKGFHL-LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
++..+..... +. .....++-... ...+++-..+...... .|+..++..++..-...|+.+.|..++..|.+.|
T Consensus 161 ll~~~Pvsa~--~~-p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~g 234 (1088)
T KOG4318|consen 161 LLAKVPVSAW--NA-PFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKG 234 (1088)
T ss_pred HHhhCCcccc--cc-hHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcC
Confidence 4433321100 00 00011222211 1223333333333322 4788889988888888999999999999999999
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGA 313 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (647)
++.+.+-|-.++-+ .++..-+..+++-|.+.|+.|+..|+...+..+..+|....+. .| .+....+..
T Consensus 235 fpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~--------e~-sq~~hg~tA 302 (1088)
T KOG4318|consen 235 FPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGE--------EG-SQLAHGFTA 302 (1088)
T ss_pred CCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcc--------cc-cchhhhhhH
Confidence 88887776666655 7778888888888999999999988888777777755422221 11 122222222
Q ss_pred HHHHHhhcC----------CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---Cccc
Q 006396 314 ILLGLCEKE----------MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP---SIVT 380 (647)
Q Consensus 314 l~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~ 380 (647)
-+..-...| ........+....-.+......+|...... ...|.-+...++-..+..-.... +...
T Consensus 303 avrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a 381 (1088)
T KOG4318|consen 303 AVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDA 381 (1088)
T ss_pred HHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHH
Confidence 222222222 111111222222222333333344333322 22566666666665554321111 1222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHH--HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-------CCC
Q 006396 381 FNSLIYGFCKNGKVADARRLLD--TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AI-------GPT 447 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-------~~~ 447 (647)
+..++.-|.+.-+......++. +..+. ..+....-.+.....+. +...+.+-+...... .+ .+-
T Consensus 382 ~~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~i 458 (1088)
T KOG4318|consen 382 FGALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLI 458 (1088)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHH
Confidence 3333333322211111111111 11110 01111111111111111 122222222111110 00 011
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--LEPTSATYNILI 525 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~ 525 (647)
...-+.++..++..-+..+++..-+.....-++ ..|..++.-+...+..+.|..+.++..... +..+...+..+.
T Consensus 459 rdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~ 535 (1088)
T KOG4318|consen 459 RDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQ 535 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHH
Confidence 122334444555555555555444433332121 567888888888888888888888876522 233555667788
Q ss_pred HHHhhcCChhhHHHHHHHHHHcC-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHN-ISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 586 (647)
+.+.+.+....+..++.++.+.- ..|+ ..++..++......|+.+...+..+-+...|+.-
T Consensus 536 dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 536 DLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 88888888888888888887621 1222 3466777788888899888888888888777654
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.4e-10 Score=113.01 Aligned_cols=491 Identities=13% Similarity=0.066 Sum_probs=284.7
Q ss_pred HHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC
Q 006396 53 DIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD 132 (647)
Q Consensus 53 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 132 (647)
.+...|..|+..+|..++..|+..|+.+.|- +|.-|.-...+.+...+..++.+....++.+.+. .|-
T Consensus 15 ~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~ 82 (1088)
T KOG4318|consen 15 LHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPL 82 (1088)
T ss_pred HHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCc
Confidence 3445677788899999999999999999998 8888877777777888999999888888888776 677
Q ss_pred HHHHHHHHHHHHhcCCHHH---HHHHHHHHhh----CCCCCChhhH---------------HHHHHHHHhcCChhhHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEE---ALEFTNDMGR----HGVEPDAITY---------------SILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~----~~~~~~~~~~---------------~~l~~~~~~~~~~~~a~~~ 190 (647)
+.+|..|..+|...||... ..+.++.+.. .|.- ..+.| ..++....-.|-++.++++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvg-s~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkl 161 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVG-SPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKL 161 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccC-cHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999998543 3333333322 1211 11111 1122223334444455555
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQI-GNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGL 269 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 269 (647)
+..+..... + ..+...++-+... ..+++-..+.....+ .|++.+|..++.+-...|+.+.|..++.+|++.|+
T Consensus 162 l~~~Pvsa~--~-~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gf 235 (1088)
T KOG4318|consen 162 LAKVPVSAW--N-APFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGF 235 (1088)
T ss_pred HhhCCcccc--c-chHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCC
Confidence 444432210 0 1111123332222 223333333333332 57999999999999999999999999999999999
Q ss_pred CCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 270 KPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
+.+..-|..++-+ .++...++.++..|...|+.|+..|+...+..+..++....+... .+....+.+-
T Consensus 236 pir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~~e~---------sq~~hg~tAa 303 (1088)
T KOG4318|consen 236 PIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYGEEG---------SQLAHGFTAA 303 (1088)
T ss_pred Ccccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhcccc---------cchhhhhhHH
Confidence 8887766666544 788888999999999999999999999998888876653332211 2222233333
Q ss_pred HHHHHhcC----------CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC--C-CCCHHHH
Q 006396 350 IDGYVKLG----------NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG--L-EPSAVTY 416 (647)
Q Consensus 350 ~~~~~~~~----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~ 416 (647)
+..-.-.| ........+++..-.|+......|...... ..+|.-+....+...+..-- . ..++..+
T Consensus 304 vrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l-~hQgk~e~veqlvg~l~npt~r~s~~~V~a~ 382 (1088)
T KOG4318|consen 304 VRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL-RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAF 382 (1088)
T ss_pred HHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH-HHcCCCchHHHHHhhhcCCccccCcchHHHH
Confidence 32222233 111122222222222333333344433332 23677777777777665321 1 1234445
Q ss_pred HHHHHHHHHcCCHHHHHHHHH--HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-------CH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQ--EMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GVTP-------DQ 483 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-------~~ 483 (647)
..++.-|.+.-+..-...++. +.... ..+....-.+.....+. +...+..-+..+... ...| -.
T Consensus 383 ~~~lrqyFrr~e~~~~~~i~~~~qgls~--~l~se~tp~vsell~~l-rkns~lr~lv~Lss~Eler~he~~~~~~h~ir 459 (1088)
T KOG4318|consen 383 GALLRQYFRRIERHICSRIYYAGQGLSL--NLNSEDTPRVSELLENL-RKNSFLRQLVGLSSTELERSHEPWPLIAHLIR 459 (1088)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHh--hhchhhhHHHHHHHHHh-CcchHHHHHhhhhHHHHhcccccchhhhhHHH
Confidence 555554443322111111111 11110 00111111111111111 112222222111110 0111 11
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN--ISLTKVAYTTIIK 561 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~ 561 (647)
..-+.++..++..-+..+++..-++....-+ ...|..|++.+....+.+.|..+..+..... ...+..-+..+.+
T Consensus 460 di~~ql~l~l~se~n~lK~l~~~ekye~~lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~d 536 (1088)
T KOG4318|consen 460 DIANQLHLTLNSEYNKLKILCDEEKYEDLLF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQD 536 (1088)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHH
Confidence 2334556666666666666655444433211 2678899999999999999999999987432 3345567788899
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 006396 562 AHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+.+.+....+..+++++.+
T Consensus 537 LL~r~~~l~dl~tiL~e~ks 556 (1088)
T KOG4318|consen 537 LLQRLAILYDLSTILYEDKS 556 (1088)
T ss_pred HHHHhHHHHHHHHHHhhhhH
Confidence 99999999999999999876
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-08 Score=100.37 Aligned_cols=546 Identities=12% Similarity=0.111 Sum_probs=291.4
Q ss_pred hHHHhcCChhhHHHHHHHHH----------hCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 006396 4 FVYSRTGMVHDAVFVIAKMK----------ELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGL 73 (647)
Q Consensus 4 ~~~~~~g~~~~A~~~~~~~~----------~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 73 (647)
.+|.+.+-+.++.+.|.+.- +.|.+||...+..-+.+ ..+|.+.+....+....+ .......+...+
T Consensus 476 ~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGyTPdymflLq~l~r-~sPD~~~qFa~~l~Q~~~--~~~die~I~DlF 552 (1666)
T KOG0985|consen 476 SIYLRANVPAKVIQCFAETGQFKKIILYAKKVGYTPDYMFLLQQLKR-SSPDQALQFAMMLVQDEE--PLADIEQIVDLF 552 (1666)
T ss_pred HHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCCCccHHHHHHHHHc-cChhHHHHHHHHhhccCC--CcccHHHHHHHH
Confidence 34555555555555555432 34778887766555544 688999988888776443 223355666666
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCH------------------------------HhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSV------------------------------VSLNAIMSRYCKLGFAEVAKGLFCL 123 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~g~~~~a~~~~~~ 123 (647)
...+..+.+...+-.++... .|+. .-+-.++..|.+.|-+..|++.+..
T Consensus 553 me~N~iQq~TSFLLdaLK~~-~Pd~g~LQTrLLE~NL~~aPqVADAILgN~mFtHyDra~IAqLCEKAGL~qraLehytD 631 (1666)
T KOG0985|consen 553 MELNLIQQCTSFLLDALKLN-SPDEGHLQTRLLEMNLVHAPQVADAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTD 631 (1666)
T ss_pred HHHHhhhhhHHHHHHHhcCC-ChhhhhHHHHHHHHHhccchHHHHHHHhccccccccHHHHHHHHHhcchHHHHHHhccc
Confidence 66666666666555554322 1111 1145566677777877777777665
Q ss_pred HHhCCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc--
Q 006396 124 MLKYGLHPDAFSY----NILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK-- 197 (647)
Q Consensus 124 ~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-- 197 (647)
+..- .....+- --.+..|.-.-.++++.+.++.|...++..+..+...+..-|...-..+...++|+.....
T Consensus 632 l~DI--KR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatky~eqlg~~~li~lFE~fks~eG 709 (1666)
T KOG0985|consen 632 LYDI--KRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATKYHEQLGAQALIELFESFKSYEG 709 (1666)
T ss_pred HHHH--HHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchh
Confidence 5432 1111111 1123344455678888889999888888888888888888888877788888888886543
Q ss_pred ---------CCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh------------C---------------CCCcCcccH
Q 006396 198 ---------GSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS------------Q---------------GFKLNVIAY 241 (647)
Q Consensus 198 ---------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------------~---------------~~~~~~~~~ 241 (647)
+..-|+...-..|.+.++.|++.+..++.++-.- . ++.+|...|
T Consensus 710 L~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL~DqlPLiiVCDRf~fVhdlvlY 789 (1666)
T KOG0985|consen 710 LYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCDRFDFVHDLVLY 789 (1666)
T ss_pred HHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccccccCceEEEecccccHHHHHHH
Confidence 2344666677788888999999998888654311 1 111111111
Q ss_pred ------HHHHHHHHhc----------------------------------------------CChhHHHHHHHHHHHCCC
Q 006396 242 ------SVLLSSMCKS----------------------------------------------GRIDEALGLLYEMEAVGL 269 (647)
Q Consensus 242 ------~~l~~~~~~~----------------------------------------------g~~~~a~~~~~~~~~~~~ 269 (647)
...|..|.+. ++...-...++.....|.
T Consensus 790 Lyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEkRNRLklLlp~LE~~i~eG~ 869 (1666)
T KOG0985|consen 790 LYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEKRNRLKLLLPWLESLIQEGS 869 (1666)
T ss_pred HHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHhhhhHHHHHHHHHHHHhccC
Confidence 1112222221 111111222222333343
Q ss_pred CCCHhhHHHHHHHHHccCCH-HHHHH---HHHH-----HHhC------------C--------CCCCcccHHHHHHHHhh
Q 006396 270 KPDLVTYSILIRGLCKQDKV-HKAIQ---LYNE-----MCSK------------R--------ISPNSFAHGAILLGLCE 320 (647)
Q Consensus 270 ~~~~~~~~~l~~~~~~~~~~-~~a~~---~~~~-----~~~~------------~--------~~~~~~~~~~l~~~~~~ 320 (647)
. |..+++.+...|...++- +.-++ .|+. ..++ | +......+....+.+.+
T Consensus 870 ~-d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~ 948 (1666)
T KOG0985|consen 870 Q-DPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFKSQARYLVE 948 (1666)
T ss_pred c-chHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHHHHHHHHHh
Confidence 3 555555555555554432 21110 1110 0000 0 00011111222222223
Q ss_pred cCCHHHH-----------HHHHHHHHHcCC--CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CccchHHHH
Q 006396 321 KEMITEA-----------RMYFDSLIMSNC--IQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP--SIVTFNSLI 385 (647)
Q Consensus 321 ~~~~~~a-----------~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 385 (647)
..+.+.- +++.+++.+... ..|+.-.+..+.++...+-+.+-++++++++-.+-.- +...-+.++
T Consensus 949 R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLi 1028 (1666)
T KOG0985|consen 949 RSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLI 1028 (1666)
T ss_pred ccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHH
Confidence 3332211 122333333221 2345555666677777777777777777776431110 111112222
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---------------------CC
Q 006396 386 YGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK---------------------AI 444 (647)
Q Consensus 386 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------------~~ 444 (647)
-.. -.-+.....++.+++...+ .|+ +.......+-+++|..+|+..... .-
T Consensus 1029 LtA-ikad~trVm~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~ 1100 (1666)
T KOG0985|consen 1029 LTA-IKADRTRVMEYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAER 1100 (1666)
T ss_pred HHH-hhcChHHHHHHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHh
Confidence 222 2233334444444443322 121 112223333444444444432100 00
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNIL 524 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 524 (647)
-..+..|..+..+-.+.|...+|++-|-+ ..|+..|..++....+.|.+++-.+++..+.+..-+|...+ .|
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyik------adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eL 1172 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIK------ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--EL 1172 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHh------cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HH
Confidence 12345677777777777777777765533 34666788888888888888888888887777555555443 67
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
+-+|++.++..+-++++ ..||......++.-|...|.++.|.-+|...
T Consensus 1173 i~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v 1220 (1666)
T KOG0985|consen 1173 IFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV 1220 (1666)
T ss_pred HHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh
Confidence 77788888776655544 3466666777777777777777776666544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.53 E-value=8e-09 Score=96.66 Aligned_cols=126 Identities=16% Similarity=0.026 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.+..-+..+...|++++|.+...+++..+ +.+...+..-+.++.+.++|++|+.+.+.-... ..+...+..-+-+..
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y 90 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY 90 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence 34444555666777777777777777665 445556666666677777777777554432110 111111122233444
Q ss_pred hcCChhhHHHHHHHHHhcCCCCC-cchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 180 LLSQISGAWKVIQKLLIKGSDPD-IVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
+.+..++|++.++- .+++ ..+...-...+.+.|++++|+++|+.+.+.+
T Consensus 91 rlnk~Dealk~~~~-----~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 91 RLNKLDEALKTLKG-----LDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HcccHHHHHHHHhc-----ccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 67777777777762 2222 3355555667778888888888888887664
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.3e-11 Score=110.01 Aligned_cols=202 Identities=13% Similarity=0.090 Sum_probs=159.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
....+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 35566777788888888888888888877653 3445677777888888889999999888888764 455667777888
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
.+...|++++|...++++......+ ....+..+..++...|++++|...+.+..+.. +.+...+..++..+...|+++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 186 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYK 186 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHH
Confidence 8888899999999999888732222 45667778888899999999999999988753 345667888889999999999
Q ss_pred HHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 571 KAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 571 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+|...+++++... +.+...+..++..+...|+.++|..+.+.+.+.
T Consensus 187 ~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 187 DARAYLERYQQTY---------------------NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 9999999988764 566777778888888999999999988877654
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.7e-08 Score=97.99 Aligned_cols=539 Identities=12% Similarity=0.071 Sum_probs=264.7
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhC-C--------CCc-CHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHH
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKEL-D--------LKV-SIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVI 70 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~-~--------~~~-~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 70 (647)
|++.|.++.+++.|.-.+-.|... | ..+ +...--++++ ..|-+++|..+|++..+ |..+-
T Consensus 763 mA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlEeA~~lYr~ckR---------~DLlN 833 (1416)
T KOG3617|consen 763 MASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLEEALILYRQCKR---------YDLLN 833 (1416)
T ss_pred HHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHHHHHHHHHHHHH---------HHHHH
Confidence 556666666666665555443321 0 012 1122223333 66677777777777665 34455
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
..|-.+|+.++|.++.+.-.+.. =..+|...+.-+...++.+.|++.|++.- .|--.++..|. .++.
T Consensus 834 KlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~AleyyEK~~----~hafev~rmL~------e~p~ 900 (1416)
T KOG3617|consen 834 KLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEYYEKAG----VHAFEVFRMLK------EYPK 900 (1416)
T ss_pred HHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHHHHhcC----ChHHHHHHHHH------hChH
Confidence 55666777777776665443321 23356666666666777777777776542 11111222111 1222
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
......+.+ .|...|.-....+...|+.+.|+.++..... |-++++..|-.|+.++|-++-++-.
T Consensus 901 ~~e~Yv~~~------~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg 965 (1416)
T KOG3617|consen 901 QIEQYVRRK------RDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG 965 (1416)
T ss_pred HHHHHHHhc------cchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc
Confidence 222233322 2334555555556667778888877776543 5566777777788888777766532
Q ss_pred hCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc---------------CCHHHHHHH
Q 006396 231 SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQ---------------DKVHKAIQL 295 (647)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------------~~~~~a~~~ 295 (647)
|......+.+.|...|++.+|...|.+... +...|+.|-.+ .+.-.|...
T Consensus 966 ------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArY 1030 (1416)
T KOG3617|consen 966 ------DKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARY 1030 (1416)
T ss_pred ------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHH
Confidence 445556677788888888888877776543 22222222111 122223333
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHH--------HHHH--cCCCCcHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 296 YNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFD--------SLIM--SNCIQDVVLYNIMIDGYVKLGNIGEAVQL 365 (647)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~--------~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 365 (647)
|++.-. .+...+..|.+.|.+.+|+++-- +++. .....|+...+...+.+....++++|..+
T Consensus 1031 yEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~l 1102 (1416)
T KOG3617|consen 1031 YEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNL 1102 (1416)
T ss_pred HHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHH
Confidence 333210 11122334455555555544321 1111 12234566666666666666777777666
Q ss_pred HHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 006396 366 YRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSA----VTYTTFMNAYCEEGNIQRLLALLQEME 440 (647)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~ 440 (647)
+-...+ |...+..|. ..+..-..++-+.|.-. .-.|+. ..+..+...|.++|.+..|.+-|.+.-
T Consensus 1103 L~~ar~---------~~~AlqlC~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1103 LCLARE---------FSGALQLCK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHH---------HHHHHHHHh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhh
Confidence 654433 222333332 22222223332333211 112332 344556677778888887777665543
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-------------HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 441 TKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE-------------DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLN 507 (647)
Q Consensus 441 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 507 (647)
.+ ...++++.+.|+.++..-+-. -+....-..++.+...++..|.+...++.--.+|+
T Consensus 1173 dK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~tFYTKgqafd~LanFY~ 1243 (1416)
T KOG3617|consen 1173 DK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIETFYTKGQAFDHLANFYK 1243 (1416)
T ss_pred hH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhHhhhhcchhHHHHHHHHH
Confidence 21 123455566666544211100 01111223445555555555555444444333333
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-----------cCCHHHHHHHH
Q 006396 508 QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA-----------EGDVHKAMTFF 576 (647)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------~g~~~~A~~~~ 576 (647)
.... + ...-|..+-.+ .|-.++|.+.+.++..++ .....+..|-+-... ..|..+.++-.
T Consensus 1244 ~cAq--i--Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc 1314 (1416)
T KOG3617|consen 1244 SCAQ--I--EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQC 1314 (1416)
T ss_pred HHHH--h--hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 3322 1 11111111111 233445555555554332 111122222111111 11333444444
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
+.++...+.++ .-+-...+..++..+....++..|.+.++.+.++.+.-|.-
T Consensus 1315 ~~lleep~ld~----------------~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k~p~~~~s 1366 (1416)
T KOG3617|consen 1315 TTLLEEPILDD----------------IIRCTRLFALLIEDHVSRKNYKPAYRALTELQKKVPNVDLS 1366 (1416)
T ss_pred HHHhhCcCCCC----------------cchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhcCCccchh
Confidence 44443321111 12335678888999999999999999999999887766543
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.48 E-value=5e-09 Score=97.96 Aligned_cols=224 Identities=13% Similarity=0.044 Sum_probs=116.0
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH--HhcC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL--CIAG 147 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~ 147 (647)
++.+...|++++|.....+++..+ +.+...+..-+.++.+.+++++|+.+.+.-.... .-+... +=.+| .+.+
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~-~~~~~~---fEKAYc~Yrln 93 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGALL-VINSFF---FEKAYCEYRLN 93 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhh-hcchhh---HHHHHHHHHcc
Confidence 455667777777777777777655 2345566667777777777777775544322110 011111 12233 3667
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHH-HhcCChHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGY-CQIGNVEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~a~~~~ 226 (647)
..++|...++-. -+.+..+...-...+.+.+++++|..+++.+.+++.+ + +...+.+- ...+-.-.+. +.
T Consensus 94 k~Dealk~~~~~----~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d-d---~d~~~r~nl~a~~a~l~~~-~~ 164 (652)
T KOG2376|consen 94 KLDEALKTLKGL----DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD-D---QDEERRANLLAVAAALQVQ-LL 164 (652)
T ss_pred cHHHHHHHHhcc----cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc-h---HHHHHHHHHHHHHHhhhHH-HH
Confidence 777777777622 1223445566666777777788888888777665322 1 11111111 1111001111 11
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC-------CCC------CH-hhHHHHHHHHHccCCHHHH
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG-------LKP------DL-VTYSILIRGLCKQDKVHKA 292 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~~~~a 292 (647)
+..... ...+...+......+...|++.+|+++++...+.+ -.- +. ..-..+...+...|+.++|
T Consensus 165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea 243 (652)
T KOG2376|consen 165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA 243 (652)
T ss_pred HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 111111 11112222333445566777777777777762211 000 00 1123344556677888888
Q ss_pred HHHHHHHHhCCCCCCcc
Q 006396 293 IQLYNEMCSKRISPNSF 309 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~ 309 (647)
..+|...++.. ++|..
T Consensus 244 ~~iy~~~i~~~-~~D~~ 259 (652)
T KOG2376|consen 244 SSIYVDIIKRN-PADEP 259 (652)
T ss_pred HHHHHHHHHhc-CCCch
Confidence 88888888764 34443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.7e-11 Score=122.26 Aligned_cols=249 Identities=14% Similarity=0.104 Sum_probs=146.5
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh---------cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK---------LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
+.++|+..|+++....+. +...+..+..++.. .+++++|...++++++.. +.+..++..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456777777777765432 34455555444332 234677777777777764 4456667777777777777
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHH
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREV 228 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 228 (647)
+++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.++. +...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 777777777777753 335566777777777777777777777777765332 122233334445566777777777777
Q ss_pred HHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCC
Q 006396 229 MLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD-LVTYSILIRGLCKQDKVHKAIQLYNEMCSKR-ISP 306 (647)
Q Consensus 229 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~ 306 (647)
......+.++..+..+..++...|++++|...+.++... .|+ ....+.+...|+..| +.+...++.+.+.. ..+
T Consensus 432 ~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~ 507 (553)
T PRK12370 432 LRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRID 507 (553)
T ss_pred HHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhh
Confidence 765532223445666677777778888888777776543 233 333444555556666 36666666655421 111
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
..... ....+.-.|+.+.+..+ +.+.+.
T Consensus 508 ~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 508 NNPGL--LPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred cCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence 11122 33334445555555444 555543
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.2e-09 Score=93.35 Aligned_cols=270 Identities=13% Similarity=0.021 Sum_probs=144.7
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
+.+......+...+...|+..++...|+.....+ +-+........-.+.+.|+.+....+...+....- .....|-.-
T Consensus 229 r~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d-py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~ 306 (564)
T KOG1174|consen 229 RCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN-PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVH 306 (564)
T ss_pred CccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC-hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhh
Confidence 3444555556666666666666666666665433 11122222223334455666665555555544310 112222222
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL 464 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 464 (647)
.......++++.|..+-++.++.. +-+...+..-...+...+++++|.-.|+..+... +-+..+|..++.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchH
Confidence 233334556666666666655442 2334444444455566666666666666655442 23455666666666666666
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHH
Q 006396 465 QEAVQLLEDMYVIGVTPDQITYNTII-RSFC-KCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
.+|..+-....+. ++.+..++..+. ..+. ...--++|.+++++.+. +.|+ ....+.+...+...|..++++.++
T Consensus 385 kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 385 KEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 6666665555543 344444444442 2222 22234566666666655 4554 444555666666666666666666
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 542 VSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 542 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+. ..||......++..+...+.+++|++.|..++..+
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 66665 35666666666666666666666666666666655
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=8.9e-11 Score=118.58 Aligned_cols=250 Identities=11% Similarity=0.055 Sum_probs=168.7
Q ss_pred CHHHHHHHHHHHHHCCCCCCccchHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 358 NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFC---------KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
+.++|...|++.++..+. +...+..+..++. ..+++++|...+++..+.. +.+...+..+...+...|+
T Consensus 276 ~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~ 353 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSE 353 (553)
T ss_pred HHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccC
Confidence 456788888888776432 3444544444433 2344788888888888764 4567777778888888899
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQ 508 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 508 (647)
+++|...|++..+.+ +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+...|++++|...+++
T Consensus 354 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-P~~~~~~~~~~~~~~~~g~~eeA~~~~~~ 431 (553)
T PRK12370 354 YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLD-PTRAAAGITKLWITYYHTGIDDAIRLGDE 431 (553)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHhccCHHHHHHHHHH
Confidence 999999999888764 3445677778888888999999999999988764 22333333444456667889999999888
Q ss_pred HHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 006396 509 MWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586 (647)
Q Consensus 509 ~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 586 (647)
+.... +| ++..+..+..++...|++++|...+.++... .|+ ......+...+...| ++|...++++.+..
T Consensus 432 ~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~--- 503 (553)
T PRK12370 432 LRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESE--- 503 (553)
T ss_pred HHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh---
Confidence 87643 34 4666777888888899999999998887653 344 335556666677777 47777777766532
Q ss_pred cchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 587 SIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.............+.-.|+-+.+..+ +++.+.+
T Consensus 504 ------------------~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 504 ------------------QRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred ------------------hHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccc
Confidence 11111111245556666777777666 6666544
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=6.4e-09 Score=101.18 Aligned_cols=300 Identities=14% Similarity=0.116 Sum_probs=162.3
Q ss_pred HHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc----
Q 006396 36 SLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKL---- 111 (647)
Q Consensus 36 ~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 111 (647)
.++...|+++.|++.++.... ............+..+.+.|+.++|..+|..++..+|. +...|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence 344467777777777766443 22234445566677777777777777777777776532 333344444443222
Q ss_pred -CChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 006396 112 -GFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME-EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWK 189 (647)
Q Consensus 112 -g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 189 (647)
.+.+...++++.+... .|...+...+.-.+..-..+. .+...+..+...|+|+ +++.|-..|....+..-..+
T Consensus 90 ~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~ 164 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES 164 (517)
T ss_pred cccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence 2355566677766654 333333322222222212232 2344555566666543 45555555554444444444
Q ss_pred HHHHHHhc----CC----------CCCc--chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCC
Q 006396 190 VIQKLLIK----GS----------DPDI--VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGR 253 (647)
Q Consensus 190 ~~~~~~~~----~~----------~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 253 (647)
++...... +. .|+. .++..+...|...|++++|+++++..+...+. .+..|..-.+.+-..|+
T Consensus 165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~ 243 (517)
T PF12569_consen 165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGD 243 (517)
T ss_pred HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCC
Confidence 44444322 10 1222 13344455666677777777777777766321 34566666777777777
Q ss_pred hhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHH
Q 006396 254 IDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDS 333 (647)
Q Consensus 254 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 333 (647)
+.+|.+.++........ |...-+..+..+.+.|++++|.+++....+.+..|....... .
T Consensus 244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m--------------Q----- 303 (517)
T PF12569_consen 244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM--------------Q----- 303 (517)
T ss_pred HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH--------------H-----
Confidence 77777777777665433 555555666666777777777777776655543221111100 0
Q ss_pred HHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 334 LIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371 (647)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 371 (647)
-.+.......+|.+.|++..|++.|..+.+
T Consensus 304 --------c~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 304 --------CMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 112233445677777887777777766654
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.2e-08 Score=99.28 Aligned_cols=125 Identities=15% Similarity=0.114 Sum_probs=63.5
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
...|...|++++|.++++..+... |..+..|..-...+-+.|++.+|.+.++........ |...-+..+..+.+.|+.
T Consensus 201 Aqhyd~~g~~~~Al~~Id~aI~ht-Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 201 AQHYDYLGDYEKALEYIDKAIEHT-PTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHhCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 333444444444444444444432 222445555555566666666666666665554333 444445555555666666
Q ss_pred HHHHHHHHHHHHCCCCCCHHH--------HHHHHHHHHHcCCHHHHHHHHHHHHh
Q 006396 395 ADARRLLDTIKLHGLEPSAVT--------YTTFMNAYCEEGNIQRLLALLQEMET 441 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~--------~~~l~~~~~~~~~~~~a~~~~~~~~~ 441 (647)
++|.+++..+.+.+..|.... ......+|.+.|++..|+.-|..+.+
T Consensus 279 e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 279 EEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666666665554443221111 12334556666666666665555443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.3e-08 Score=88.41 Aligned_cols=300 Identities=11% Similarity=0.028 Sum_probs=217.3
Q ss_pred ccHHHHHHHHHh--cCChhHHHHHHHHHHHC-CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCc-ccHHHH
Q 006396 239 IAYSVLLSSMCK--SGRIDEALGLLYEMEAV-GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS-FAHGAI 314 (647)
Q Consensus 239 ~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l 314 (647)
......+.++.. .++...+...+-.+... -++-|+.....+...+...|+.++|+..|++.... .|+. ......
T Consensus 195 dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Y 272 (564)
T KOG1174|consen 195 DWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLY 272 (564)
T ss_pred cHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHH
Confidence 333333444333 34444444444333332 24557778899999999999999999999998764 3433 333444
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
...+...|+.+....+...+.... ......|-.-+......+++..|+.+-++.++.... +...+-.-...+...+++
T Consensus 273 a~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~ 350 (564)
T KOG1174|consen 273 AVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERH 350 (564)
T ss_pred HHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccch
Confidence 555678899999988888887643 122333333344455678899999999988876433 444455555677889999
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVI-KGLC-KQWKLQEAVQLLE 472 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~g~~~~a~~~~~ 472 (647)
.+|.-.|+..+... +-+...|..++.+|...|.+.+|...-+...+. ++.+..+.+.+. ..+. ...--++|.++++
T Consensus 351 ~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 351 TQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred HHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 99999999887652 467899999999999999999998887776554 234556665553 3332 2334578999999
Q ss_pred HHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 473 DMYVIGVTPD-QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 473 ~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
...+. .|+ ....+.+...+...|..+++..++++.+. ..||....+.|++.+...+.+++|.+.|..++..+
T Consensus 429 k~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 429 KSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred hhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 88774 444 45677888899999999999999999988 68899999999999999999999999999999853
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-10 Score=95.72 Aligned_cols=189 Identities=11% Similarity=-0.045 Sum_probs=120.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++..|...++++++++| .+..+|..++..|-+.|+.+.|.+.|++++...+. +..+++.....++.+|++++|.+
T Consensus 47 ~~gd~~~A~~nlekAL~~DP-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~~~eA~q 124 (250)
T COG3063 47 QQGDYAQAKKNLEKALEHDP-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGRPEEAMQ 124 (250)
T ss_pred HCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCChHHHHH
Confidence 66677777777777776554 55566666777777777777777777777665432 55567777777777777777777
Q ss_pred HHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC
Q 006396 120 LFCLMLKYGLHPD-AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG 198 (647)
Q Consensus 120 ~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 198 (647)
.|+++......+. ..+|..+.-+..+.|+++.|.+.|++..+.. +-...+...+.......|++-.|...++.....+
T Consensus 125 ~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~ 203 (250)
T COG3063 125 QFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARLYLERYQQRG 203 (250)
T ss_pred HHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHHHHHHHHhcc
Confidence 7777766532222 3355556555566777777777777766652 3344556666666667777777777777666655
Q ss_pred CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 199 SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 199 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
. ++..+.-..|+.-.+.|+.+.+.+.=..+.+.
T Consensus 204 ~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~ 236 (250)
T COG3063 204 G-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL 236 (250)
T ss_pred c-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 4 56666666666666677766666655555443
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.3e-11 Score=102.84 Aligned_cols=235 Identities=11% Similarity=0.007 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
-.--+.+..+|.+.|-+.+|.+-++..++. .|-+.||..+-.+|.+..++..|..++.+-.+. ++-++.....+.+.
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi 299 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARI 299 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHH
Confidence 334467889999999999999999998876 456678888999999999999999999988875 34455555667788
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
+-..++.++|.++++...+.. +.+......+...|.-.++++.|+..++++.+.| .-++..|..+.-+|.-.++++-+
T Consensus 300 ~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-~~speLf~NigLCC~yaqQ~D~~ 377 (478)
T KOG1129|consen 300 HEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-AQSPELFCNIGLCCLYAQQIDLV 377 (478)
T ss_pred HHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence 888999999999999998864 4566677777778888899999999999999998 56788899999999999999999
Q ss_pred HHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 503 FQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 503 ~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+..|++....-..|+ .++|..+.......||+..|.+.|+-.+..+ ..+...++.+.-.-.+.|++++|..++..+.
T Consensus 378 L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~ 456 (478)
T KOG1129|consen 378 LPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAK 456 (478)
T ss_pred HHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhh
Confidence 999999987433454 7889999999999999999999999998764 4456789999988899999999999999998
Q ss_pred HcC
Q 006396 581 EKG 583 (647)
Q Consensus 581 ~~~ 583 (647)
...
T Consensus 457 s~~ 459 (478)
T KOG1129|consen 457 SVM 459 (478)
T ss_pred hhC
Confidence 765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.41 E-value=2e-08 Score=96.42 Aligned_cols=364 Identities=15% Similarity=0.085 Sum_probs=200.1
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (647)
..++.+|..+|-+ + | .-...+.+|....++++++.+.+.. |.|.-...-.+.++.+...|+-++|-++
T Consensus 544 ~kkfk~ae~ifle---q----n--~te~aigmy~~lhkwde~i~lae~~---~~p~~eklk~sy~q~l~dt~qd~ka~el 611 (1636)
T KOG3616|consen 544 EKKFKEAEMIFLE---Q----N--ATEEAIGMYQELHKWDEAIALAEAK---GHPALEKLKRSYLQALMDTGQDEKAAEL 611 (1636)
T ss_pred HhhhhHHHHHHHh---c----c--cHHHHHHHHHHHHhHHHHHHHHHhc---CChHHHHHHHHHHHHHHhcCchhhhhhh
Confidence 3456777766632 1 1 1134566777778888888776543 2222223334555666667777666543
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
-. . +..+ .+.|..|.+.|.+-+|.+....=.. +..|......+..++.+..-++.|-.+|+++..
T Consensus 612 k~----s----dgd~-laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d---- 676 (1636)
T KOG3616|consen 612 KE----S----DGDG-LAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD---- 676 (1636)
T ss_pred cc----c----cCcc-HHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----
Confidence 21 1 2222 3456778888887777654321111 123555555566666666666777777776652
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccH-HHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAH-GAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
| ...+..+.+.+-+.+|+++-+-.. +....++ ......+...|+++.|...|-+. ...-..
T Consensus 677 ~-----dkale~fkkgdaf~kaielarfaf----p~evv~lee~wg~hl~~~~q~daainhfiea---------~~~~ka 738 (1636)
T KOG3616|consen 677 F-----DKALECFKKGDAFGKAIELARFAF----PEEVVKLEEAWGDHLEQIGQLDAAINHFIEA---------NCLIKA 738 (1636)
T ss_pred H-----HHHHHHHHcccHHHHHHHHHHhhC----cHHHhhHHHHHhHHHHHHHhHHHHHHHHHHh---------hhHHHH
Confidence 1 222333333334555555443321 1111111 12233344556666665554332 123344
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
+.+-....+|.+|+.+++.+..+.. ...-|..+...|+..|+++.|.++|-+.- .++-.+.+|.+.|+|
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw 807 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW 807 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence 5666677788888888887776532 33456667778888888888888775432 345567778888888
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
+.|.++-.+.... ......|..-..-+-+.|++.+|.+++-.+. .|+. .|..|-+.|..+..+++.++-
T Consensus 808 ~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~ 876 (1636)
T KOG3616|consen 808 EDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH 876 (1636)
T ss_pred HHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh
Confidence 8888776665432 2233445444555566777777776654332 3332 345666666666666666553
Q ss_pred HhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 006396 510 WLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSL 544 (647)
Q Consensus 510 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (647)
.. ..-..+...+..-|...|+++.|...|-++
T Consensus 877 h~---d~l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 877 HG---DHLHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred Ch---hhhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 21 111344455555566666666665555444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-10 Score=104.66 Aligned_cols=165 Identities=16% Similarity=0.056 Sum_probs=76.2
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..+..++..+...|++++|...++++....+ .+...+..++..+...|++++|...+++..+.. +.+...+..+...+
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 3445555555555555555555555554322 133445555555555555555555555555543 33344444555555
Q ss_pred HhcCCHHHHHHHHHHHhhCCC-CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 144 CIAGSMEEALEFTNDMGRHGV-EPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
...|++++|.+.+++..+... +.....+..+..++...|++++|.+.+++....... +...+..+...+...|++++|
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555543211 112223333444444444444444444444433111 222333344444444444444
Q ss_pred HHHHHHHHh
Q 006396 223 LKLREVMLS 231 (647)
Q Consensus 223 ~~~~~~~~~ 231 (647)
...++....
T Consensus 189 ~~~~~~~~~ 197 (234)
T TIGR02521 189 RAYLERYQQ 197 (234)
T ss_pred HHHHHHHHH
Confidence 444444433
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-07 Score=91.45 Aligned_cols=239 Identities=13% Similarity=0.150 Sum_probs=163.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
....+-+++|..+|++.- .+......++. .-++.+.|.+.-+... .+..|+.+..+-.+.+...+|
T Consensus 1058 ai~~~LyEEAF~ifkkf~-----~n~~A~~VLie---~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dA 1123 (1666)
T KOG0985|consen 1058 AIENQLYEEAFAIFKKFD-----MNVSAIQVLIE---NIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDA 1123 (1666)
T ss_pred HhhhhHHHHHHHHHHHhc-----ccHHHHHHHHH---HhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHH
Confidence 444555666666666542 13333333333 2345555554443332 345788888888888888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
++-|-+. .|+..|..+++...+.|.+++-.+.+....+...+|...+ .++-+|.+.+++.+-+++.
T Consensus 1124 ieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~elE~fi------ 1189 (1666)
T KOG0985|consen 1124 IESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTELEEFI------ 1189 (1666)
T ss_pred HHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHHHHHHh------
Confidence 8766432 3667889999999999999999999988887765665544 7888899998887765543
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
.-||......+++-|...|.++.|.-+|... ..|..++..+...|+++.|.+.-+++-. ...|.
T Consensus 1190 -~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AVD~aRKAns------~ktWK 1253 (1666)
T KOG0985|consen 1190 -AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAVDAARKANS------TKTWK 1253 (1666)
T ss_pred -cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHHHHhhhccc------hhHHH
Confidence 3578888888888899999998888777654 3477788888888888888887776643 23444
Q ss_pred hHHHHhh--------hhCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 593 KSFFCMM--------LSNG--FPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 593 ~~~~~~~--------~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.+-|..+ .-+| +-...+-...++.-|...|-+++-+.+++..+
T Consensus 1254 ~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1254 EVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 3322222 2222 23446667788888888999999888877654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.5e-08 Score=100.65 Aligned_cols=564 Identities=10% Similarity=-0.010 Sum_probs=323.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
...+...|...|-+.++.++ .-..+|..|+..|+...+.-+|...|+.+-+.+.. +...+-.....|++..+++.|..
T Consensus 470 ~rK~~~~al~ali~alrld~-~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~ 547 (1238)
T KOG1127|consen 470 MRKNSALALHALIRALRLDV-SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFE 547 (1238)
T ss_pred hhhhHHHHHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHH
Confidence 34456777777777776443 34568899999999888889999999999886543 66788889999999999999998
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 120 LFCLMLKYGLHPD--AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 120 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
+.-...+.. +.. ...|..+.-.|...++...|..-|+...+.. |.|...|..+..+|...|.+..|.++|.+....
T Consensus 548 I~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L 625 (1238)
T KOG1127|consen 548 ICLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL 625 (1238)
T ss_pred HHHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc
Confidence 854443321 111 2223334555677889999999999998873 558899999999999999999999999888765
Q ss_pred CCCCCcc-hHHHHHHHHHhcCChHHHHHHHHHHHhCC------CCcCcccHHHHHHHHHhcCChhHHHHHHHH-------
Q 006396 198 GSDPDIV-TYTVLICGYCQIGNVEEGLKLREVMLSQG------FKLNVIAYSVLLSSMCKSGRIDEALGLLYE------- 263 (647)
Q Consensus 198 ~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~------- 263 (647)
.|+.. .--......+..|.+.+++..++.+...- ...-..++..+...+...|-...+..++++
T Consensus 626 --rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~ 703 (1238)
T KOG1127|consen 626 --RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIV 703 (1238)
T ss_pred --CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 33321 11223344577899999999888876531 111222333333333333433333333333
Q ss_pred HHHCCCCCCHhhHHHHHHHHHc---cC--CH-HHHHHHHH-HHHhCCC--------------------CCCcccHHHHHH
Q 006396 264 MEAVGLKPDLVTYSILIRGLCK---QD--KV-HKAIQLYN-EMCSKRI--------------------SPNSFAHGAILL 316 (647)
Q Consensus 264 ~~~~~~~~~~~~~~~l~~~~~~---~~--~~-~~a~~~~~-~~~~~~~--------------------~~~~~~~~~l~~ 316 (647)
........+...|..+-.+|.- .. -+ .....++. +....+. ..+..++..++.
T Consensus 704 ~l~h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGi 783 (1238)
T KOG1127|consen 704 SLIHSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGI 783 (1238)
T ss_pred HHHHhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhH
Confidence 2222212233333332222211 00 00 00011111 1111111 122334444444
Q ss_pred HHhh-------c-CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHH
Q 006396 317 GLCE-------K-EMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGF 388 (647)
Q Consensus 317 ~~~~-------~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 388 (647)
.|.+ . .+...|...+...++.. ..+..+|+.|.-. ...|++.-+...|-+-....+. ...+|..+.-.+
T Consensus 784 nylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~ 860 (1238)
T KOG1127|consen 784 NYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLV 860 (1238)
T ss_pred HHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeE
Confidence 3332 1 12234555555555432 2355666665544 5557777777777665554332 556677777777
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH--H--hCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 389 CKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEM--E--TKAIGPTHVTYTVVIKGLCKQWKL 464 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--~--~~~~~~~~~~~~~l~~~~~~~g~~ 464 (647)
....+++.|...|....... +.+...|..........|+.-+...+|..- . ..|--|...-|-.........|+.
T Consensus 861 l~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~ 939 (1238)
T KOG1127|consen 861 LENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNI 939 (1238)
T ss_pred EecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccch
Confidence 88889999999998887653 445555555544455667777777777651 1 123334444444444455566666
Q ss_pred HHHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCCCHHHHH----HHHHHHhh
Q 006396 465 QEAVQLLEDMYVI---------GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-NLEPTSATYN----ILIDGLCV 530 (647)
Q Consensus 465 ~~a~~~~~~~~~~---------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~----~l~~~~~~ 530 (647)
++-+...+++... +.+.+.+.|...+...-..+.+..|.+...+.+.- -.+-+...|+ .+.+.++.
T Consensus 940 e~~I~t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~ls 1019 (1238)
T KOG1127|consen 940 EESINTARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELS 1019 (1238)
T ss_pred HHHHHHhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhh
Confidence 6554444433221 34556667777777777777777777776665430 0122333333 44566666
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QE 609 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 609 (647)
.|+++.|..-+..... ..+......-+ +..-.|+++++.+.|++++... .+ ..+ +.
T Consensus 1020 lgefe~A~~a~~~~~~---evdEdi~gt~l-~lFfkndf~~sl~~fe~aLsis--~s-----------------e~d~vv 1076 (1238)
T KOG1127|consen 1020 LGEFESAKKASWKEWM---EVDEDIRGTDL-TLFFKNDFFSSLEFFEQALSIS--NS-----------------ESDKVV 1076 (1238)
T ss_pred hcchhhHhhhhcccch---hHHHHHhhhhH-HHHHHhHHHHHHHHHHHHhhhc--cc-----------------ccchhh
Confidence 7777766554433221 11111111111 2244588888888888887643 00 111 34
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
....++.+...+|..+.|+..+-+...
T Consensus 1077 Ll~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1077 LLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 445555666666666666666555443
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.9e-08 Score=96.08 Aligned_cols=561 Identities=12% Similarity=0.016 Sum_probs=296.1
Q ss_pred ChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
....|...|-+.++.+.. ....++...+. ..-+...|.+.|+.+-+-+. .+..++-.....|....+.+.|..+.-.
T Consensus 473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa-tdaeaaaa~adtyae~~~we~a~~I~l~ 551 (1238)
T KOG1127|consen 473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA-TDAEAAAASADTYAEESTWEEAFEICLR 551 (1238)
T ss_pred hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence 367788888888887543 22233333333 22366678888888876554 5667778888888888888888887554
Q ss_pred hhcCCCC-cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006396 89 TAGKEFG-PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD 167 (647)
Q Consensus 89 ~~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (647)
..+..+. .-...|....-.|...++...|..-|+..++.. +.|...|..+..+|.++|++..|.++|.+.... .|+
T Consensus 552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~ 628 (1238)
T KOG1127|consen 552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPL 628 (1238)
T ss_pred HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcH
Confidence 4432211 112245555556777888888888888888775 556778888888888888888888888887654 232
Q ss_pred -hhhHHHHHHHHHhcCChhhHHHHHHHHHhcC------CCCCcchHHHHHHHHHhcCChHHHHHHHHHH-------HhCC
Q 006396 168 -AITYSILAKGFHLLSQISGAWKVIQKLLIKG------SDPDIVTYTVLICGYCQIGNVEEGLKLREVM-------LSQG 233 (647)
Q Consensus 168 -~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-------~~~~ 233 (647)
...-.-........|++.+++..+....... ..--..++......+...|-..++..+++.. ....
T Consensus 629 s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~ 708 (1238)
T KOG1127|consen 629 SKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHS 708 (1238)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHh
Confidence 1111222334455788888887777665431 0101122222223333333333333333332 2222
Q ss_pred CCcCcccHHHHHHHHHhcCChh------HHHHHH-HHHHHCCC--------------------CCCHhhHHHHHHHHHc-
Q 006396 234 FKLNVIAYSVLLSSMCKSGRID------EALGLL-YEMEAVGL--------------------KPDLVTYSILIRGLCK- 285 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~------~a~~~~-~~~~~~~~--------------------~~~~~~~~~l~~~~~~- 285 (647)
...+...|..+.++|.-.-..+ ....++ .+....+. ..+..+|..++..|.+
T Consensus 709 ~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~ 788 (1238)
T KOG1127|consen 709 LQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRY 788 (1238)
T ss_pred hhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHH
Confidence 1222333333332222111000 001111 11111111 1123344444443333
Q ss_pred -------cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006396 286 -------QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358 (647)
Q Consensus 286 -------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (647)
..+...|+..+.+.++. ..+...+...+......|.+.-+...|-.-.... +....+|..+...+.+..+
T Consensus 789 f~~l~et~~~~~~Ai~c~KkaV~L--~ann~~~WnaLGVlsg~gnva~aQHCfIks~~se-p~~~~~W~NlgvL~l~n~d 865 (1238)
T KOG1127|consen 789 FLLLGETMKDACTAIRCCKKAVSL--CANNEGLWNALGVLSGIGNVACAQHCFIKSRFSE-PTCHCQWLNLGVLVLENQD 865 (1238)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHH--hhccHHHHHHHHHhhccchhhhhhhhhhhhhhcc-ccchhheeccceeEEeccc
Confidence 12234667777776654 3344444444444555566666666555444433 4456677777778888889
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIK--L--HGLEPSAVTYTTFMNAYCEEGNIQRLLA 434 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 434 (647)
++-|...|.......+. +...|-.........|+.-+...+|..-- . .|--++..-|..........|+.++-+.
T Consensus 866 ~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~ 944 (1238)
T KOG1127|consen 866 FEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESIN 944 (1238)
T ss_pred HHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHH
Confidence 99999999888765332 55566555555566777777777776521 1 2223333333333333445555554433
Q ss_pred HHHHHHh---------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHH----HHHHHHHhcCCHH
Q 006396 435 LLQEMET---------KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVTPDQITYN----TIIRSFCKCKDLR 500 (647)
Q Consensus 435 ~~~~~~~---------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~----~l~~~~~~~~~~~ 500 (647)
..+.+.. .+.+.....|..........+.++.|.....+.+.. ....+...|+ ...+.++..|+++
T Consensus 945 t~~ki~sAs~al~~yf~~~p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe 1024 (1238)
T KOG1127|consen 945 TARKISSASLALSYYFLGHPQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFE 1024 (1238)
T ss_pred HhhhhhhhHHHHHHHHhcCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchh
Confidence 3333221 133445566766666666677777776666655421 0122222232 3344455566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (647)
.|..-+..... ..+..+-..-+. ..-.|+++++.+.|+++... +...+. .....++.+....+..+.|...+-+
T Consensus 1025 ~A~~a~~~~~~---evdEdi~gt~l~-lFfkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe 1100 (1238)
T KOG1127|consen 1025 SAKKASWKEWM---EVDEDIRGTDLT-LFFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFE 1100 (1238)
T ss_pred hHhhhhcccch---hHHHHHhhhhHH-HHHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHH
Confidence 55443332221 111111111111 12356777777777777752 111121 2345555666666777777766666
Q ss_pred HHHcC
Q 006396 579 MVEKG 583 (647)
Q Consensus 579 ~~~~~ 583 (647)
.....
T Consensus 1101 ~~~ls 1105 (1238)
T KOG1127|consen 1101 VKSLS 1105 (1238)
T ss_pred HHHhC
Confidence 65543
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=9.3e-08 Score=93.10 Aligned_cols=476 Identities=13% Similarity=0.107 Sum_probs=231.8
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+..-...|++++|.++|+++.+. -..|.+.+.+|++++|.++-+.-.+. .=..+|...+..+...++.+.|
T Consensus 807 AvLAieLgMlEeA~~lYr~ckR~------DLlNKlyQs~g~w~eA~eiAE~~DRi---HLr~Tyy~yA~~Lear~Di~~A 877 (1416)
T KOG3617|consen 807 AVLAIELGMLEEALILYRQCKRY------DLLNKLYQSQGMWSEAFEIAETKDRI---HLRNTYYNYAKYLEARRDIEAA 877 (1416)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH------HHHHHHHHhcccHHHHHHHHhhccce---ehhhhHHHHHHHHHhhccHHHH
Confidence 34456789999999999999986 35788888999999999987753321 2234788888888899999999
Q ss_pred HHHHHHhhcCCCC-------------------cCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFG-------------------PSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 83 ~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
++.|++.....+. .+...|.-...-+-..|+.+.|+.+|..+.. |-.++...
T Consensus 878 leyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~ 948 (1416)
T KOG3617|consen 878 LEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIK 948 (1416)
T ss_pred HHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeE
Confidence 9999876421110 1222222223333344555555555544431 33445555
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcC------
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIG------ 217 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~------ 217 (647)
+-+|+.++|-++.++- .|....-.|.+.|...|++.+|..+|-+... +...|+.|-.++
T Consensus 949 C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~ 1013 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLA 1013 (1416)
T ss_pred eeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHH
Confidence 5556666665555433 2344445566666666666666666655432 222222221111
Q ss_pred ---------ChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH--------HHHC--CCCCCHhhHHH
Q 006396 218 ---------NVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE--------MEAV--GLKPDLVTYSI 278 (647)
Q Consensus 218 ---------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~--------~~~~--~~~~~~~~~~~ 278 (647)
+.-.|-++|++.-. -+......|-+.|.+.+|+++--+ +... ....|....+.
T Consensus 1014 nlal~s~~~d~v~aArYyEe~g~--------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~R 1085 (1416)
T KOG3617|consen 1014 NLALMSGGSDLVSAARYYEELGG--------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRR 1085 (1416)
T ss_pred HHHhhcCchhHHHHHHHHHHcch--------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHH
Confidence 11122222222110 011222334444544444433211 1111 11223334444
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH-cCCCCc----HHHHHHHHHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM-SNCIQD----VVLYNIMIDGY 353 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~----~~~~~~l~~~~ 353 (647)
-...++...++++|..++-...+. ...+..| ...+..-..++-+.|.- .+..|+ ...+..+...|
T Consensus 1086 cadFF~~~~qyekAV~lL~~ar~~---------~~AlqlC-~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c 1155 (1416)
T KOG3617|consen 1086 CADFFENNQQYEKAVNLLCLAREF---------SGALQLC-KNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELC 1155 (1416)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHH---------HHHHHHH-hcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHH
Confidence 444445555555555554433221 0111111 11111111111111111 101122 23455667778
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHH---------HH----HHHHHCCCCCCHHHHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARR---------LL----DTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~---------~~----~~~~~~~~~~~~~~~~~l~ 420 (647)
.++|.+..|-+-|.+.-++ -..++++.++|+.++..- +| +.+.....+.++.+...++
T Consensus 1156 ~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~KI~FFAn~sRqkEiYImAANyLQtlDWq~~pq~mK~I~ 1226 (1416)
T KOG3617|consen 1156 LQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQKIRFFANTSRQKEIYIMAANYLQTLDWQDNPQTMKDIE 1226 (1416)
T ss_pred HhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcceEEEEeeccccceeeeehhhhhhhcccccChHHHhhhH
Confidence 8888888887777654332 123455555665443211 00 1112223455666666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH----------H
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI----------I 490 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l----------~ 490 (647)
..|.+...++..-..|+....- ....|...-.+ .|-.++|.+.+.++...+ .....++.| +
T Consensus 1227 tFYTKgqafd~LanFY~~cAqi----Eiee~q~ydKa---~gAl~eA~kCl~ka~~k~--~~~t~l~~Lq~~~a~vk~~l 1297 (1416)
T KOG3617|consen 1227 TFYTKGQAFDHLANFYKSCAQI----EIEELQTYDKA---MGALEEAAKCLLKAEQKN--MSTTGLDALQEDLAKVKVQL 1297 (1416)
T ss_pred hhhhcchhHHHHHHHHHHHHHh----hHHHHhhhhHH---hHHHHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHHH
Confidence 6666555454444444433221 11111111111 233455555555554332 111122222 1
Q ss_pred HHHH-hcCCHHHHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 491 RSFC-KCKDLRKAFQLLNQMWLHNLEP----TSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 491 ~~~~-~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+... -..|....++-...+.+....| ....|..|+..+....++..|-+.+.++..+
T Consensus 1298 ~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~~v~~k~y~~AyRal~el~~k 1359 (1416)
T KOG3617|consen 1298 RKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIEDHVSRKNYKPAYRALTELQKK 1359 (1416)
T ss_pred HHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHHHHhhhhccHHHHHHHHHhhc
Confidence 1111 0124444555555555533333 2456777888888888888888888888775
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-09 Score=101.15 Aligned_cols=225 Identities=11% Similarity=-0.027 Sum_probs=159.1
Q ss_pred CCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 392 GKVADARRLLDTIKLHG-LEP--SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAV 468 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 468 (647)
+..+.++..+.+++... ..| ....|..+...|...|+++.|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45666777777776532 122 24567777888899999999999999988864 456788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 469 QLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
..+++..+.. +.+..++..+..++...|++++|.+.++...+ ..|+..........+...+++++|...+.+....
T Consensus 119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~- 194 (296)
T PRK11189 119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK- 194 (296)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh-
Confidence 9999999864 44567888888889999999999999999998 4454322222223344567899999999776643
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 006396 549 ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 628 (647)
.+|+. |. ........|+..++ ..++.+.+.. ...+. . -+...++|..++..+.+.|++++|+
T Consensus 195 ~~~~~--~~-~~~~~~~lg~~~~~-~~~~~~~~~~-~~~~~-l------------~~~~~ea~~~Lg~~~~~~g~~~~A~ 256 (296)
T PRK11189 195 LDKEQ--WG-WNIVEFYLGKISEE-TLMERLKAGA-TDNTE-L------------AERLCETYFYLAKYYLSLGDLDEAA 256 (296)
T ss_pred CCccc--cH-HHHHHHHccCCCHH-HHHHHHHhcC-CCcHH-H------------HHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 23332 22 23344456666554 3445444211 00000 0 0334679999999999999999999
Q ss_pred HHHHHHHhCCC
Q 006396 629 ELAAVMIKSGL 639 (647)
Q Consensus 629 ~~~~~~~~~~~ 639 (647)
..|+++++.++
T Consensus 257 ~~~~~Al~~~~ 267 (296)
T PRK11189 257 ALFKLALANNV 267 (296)
T ss_pred HHHHHHHHhCC
Confidence 99999998764
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.9e-09 Score=87.51 Aligned_cols=199 Identities=14% Similarity=0.048 Sum_probs=156.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
...+.-.|...|++..|..-+++..+.. +.+..+|..+...|.+.|..+.|.+.|++..+.. +.+..+.|.....+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence 4456667888899999988888888874 3345578888888888899999999998888764 5566778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|.+++|...|++++....-| -..+|..++.+..+.|+.+.|...+++.++.. +..+.+...+.....+.|++-.|..
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~ 194 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL 194 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence 889999999999888743222 36788888888888999999999999988853 3345578888888899999999999
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++++....+ ++..+.....++.-.+.|+.+.|.++=..+...-
T Consensus 195 ~~~~~~~~~---------------------~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 195 YLERYQQRG---------------------GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHhcc---------------------cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 998888877 5777777777788888888888877766665543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.7e-09 Score=98.43 Aligned_cols=220 Identities=13% Similarity=-0.023 Sum_probs=142.5
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSET---PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (647)
..+..+.++..+.+++...+ ...+..|..++..+...|+.++|+..|++++...+. +...|+.+...+...|+++.
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~ 116 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDA 116 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHH
Confidence 34566777777777775322 122445778888888888888888888888876543 56788888888888889998
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
|...|+++++.. +.+..++..+..++...|++++|.+.|+...+.. |+..............++.++|...+++...
T Consensus 117 A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 117 AYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 888888888764 4456677778888888888888888888887753 3322222222234456778888888866553
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---CCC---cCcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ---GFK---LNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
.. .|+...+ . ......|+...+ +.++.+.+. ... .....|..+...+.+.|++++|...|++..+.+
T Consensus 194 ~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 194 KL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2222211 2 222334554443 233333321 111 123467777778888888888888888877653
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.5e-09 Score=102.54 Aligned_cols=204 Identities=16% Similarity=0.115 Sum_probs=146.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCH-
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETK-----A-IGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-----GV-TPDQ- 483 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~- 483 (647)
.+...|...+++.+|..+|+++... | ..|. ..+++.|...|.+.|++++|...++++.+. +. .|..
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 4666777888888888888876542 2 1122 235666777788888888888877776542 11 1222
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CC--C
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLH---NLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH----NI--S 550 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~--~ 550 (647)
..++.++..|...+.++.|..+++...+. -+.++ ..+++.|...|...|++++|.+++++++.. +- .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 24566777788889999999998887651 11222 567899999999999999999999998853 11 1
Q ss_pred CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 551 LT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 551 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
+. ...++.+...|.+.+++++|.++|.+..... + ...-+.|....+|..|+.+|.+.|+++.|.+
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~-~-------------~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM-K-------------LCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH-H-------------HhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 22 3467889999999999999999999886532 0 0011123446889999999999999999999
Q ss_pred HHHHHH
Q 006396 630 LAAVMI 635 (647)
Q Consensus 630 ~~~~~~ 635 (647)
+.+.+.
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 988876
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.5e-07 Score=87.42 Aligned_cols=312 Identities=13% Similarity=0.066 Sum_probs=184.4
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG 147 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 147 (647)
..++.|.+.|.+..|......-.. ...|..+...+..++.+..-+++|-.+|+++.. + ...+..|-+-+
T Consensus 620 aaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~elydkagdlfeki~d----~-----dkale~fkkgd 688 (1636)
T KOG3616|consen 620 AAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKGELYDKAGDLFEKIHD----F-----DKALECFKKGD 688 (1636)
T ss_pred HHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC----H-----HHHHHHHHccc
Confidence 445667777777766654322111 224566677777777777777777777777652 1 22233333333
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHH-HHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYS-ILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 226 (647)
-+.+|.++.+-. +|..+.+.. ....-+...|+++.|..-|-+.. .....+.+......+.+|+.++
T Consensus 689 af~kaielarfa----fp~evv~lee~wg~hl~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~il 755 (1636)
T KOG3616|consen 689 AFGKAIELARFA----FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISIL 755 (1636)
T ss_pred HHHHHHHHHHhh----CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHH
Confidence 355566555443 332332221 22233445566666665554332 2234456667778888888888
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 306 (647)
+.+.... ....-|..+.+.|...|+++.|.++|-+.- .++..|..|.+.|.|+.|.++-++.... ..
T Consensus 756 dniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~~--e~ 822 (1636)
T KOG3616|consen 756 DNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHGP--EA 822 (1636)
T ss_pred HHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcCc--hh
Confidence 8877653 233446677788888888888888886542 3456677888888888888887776432 33
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (647)
....|..-..-+-..|.+.+|+++|-.+.. |+ ..+..|-+.|..+..+++..+.... .-..|...+..
T Consensus 823 t~~~yiakaedldehgkf~eaeqlyiti~~----p~-----~aiqmydk~~~~ddmirlv~k~h~d---~l~dt~~~f~~ 890 (1636)
T KOG3616|consen 823 TISLYIAKAEDLDEHGKFAEAEQLYITIGE----PD-----KAIQMYDKHGLDDDMIRLVEKHHGD---HLHDTHKHFAK 890 (1636)
T ss_pred HHHHHHHhHHhHHhhcchhhhhheeEEccC----ch-----HHHHHHHhhCcchHHHHHHHHhChh---hhhHHHHHHHH
Confidence 334455555556677888888777644322 22 3466777778777777776654321 12234445556
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 387 GFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
-+-..|+...|..-|-+.. .|.+-+++|-..+.|+.|.++-+
T Consensus 891 e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 891 ELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 6666777777776654432 24455556666666666655543
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.26 E-value=6.9e-08 Score=89.71 Aligned_cols=434 Identities=16% Similarity=0.053 Sum_probs=223.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcC
Q 006396 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD-AFSYNILIHGLCIAG 147 (647)
Q Consensus 69 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~ 147 (647)
-++..+..|+++.|+..|..++...+. |...|..-..+|...|++++|++=-.+..+. .|+ +..|.....+..-.|
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~-nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg 84 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPT-NHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLG 84 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCC-ccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcc
Confidence 456778889999999999999887654 7778888888999999999988877776665 555 447888888888889
Q ss_pred CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC-hHHHHHHH
Q 006396 148 SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN-VEEGLKLR 226 (647)
Q Consensus 148 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~ 226 (647)
++++|+.-|.+-++. .+.+...++-+..++ ..+.+. +.. .-++..|..+..--..+.- .+.+....
T Consensus 85 ~~~eA~~ay~~GL~~-d~~n~~L~~gl~~a~----~~~~~~-----~~~---~~~p~~~~~l~~~p~t~~~~~~~~~~~~ 151 (539)
T KOG0548|consen 85 DYEEAILAYSEGLEK-DPSNKQLKTGLAQAY----LEDYAA-----DQL---FTKPYFHEKLANLPLTNYSLSDPAYVKI 151 (539)
T ss_pred cHHHHHHHHHHHhhc-CCchHHHHHhHHHhh----hHHHHh-----hhh---ccCcHHHHHhhcChhhhhhhccHHHHHH
Confidence 999999999988775 233445555555555 111111 100 1123333332221111110 11111111
Q ss_pred HHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----CCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006396 227 EVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA-----VGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCS 301 (647)
Q Consensus 227 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (647)
......+ +.. +..+....++..+...+..... .|..+. .....+. ..+.
T Consensus 152 l~~~~~~----p~~----l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~-----------~~~~~p~------~~~~- 205 (539)
T KOG0548|consen 152 LEIIQKN----PTS----LKLYLNDPRLMKADGQLKGVDELLFYASGIEIL-----------ASMAEPC------KQEH- 205 (539)
T ss_pred HHHhhcC----cHh----hhcccccHHHHHHHHHHhcCccccccccccccC-----------CCCCCcc------cccC-
Confidence 1111111 100 0111111111111111111000 000000 0000000 0000
Q ss_pred CCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccch
Q 006396 302 KRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTF 381 (647)
Q Consensus 302 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 381 (647)
.|.+ ..++..+-.+. ..-..-...+.....+..++..+++.+....+.. .+..-+
T Consensus 206 ---~~~~-----------~~~d~~ee~~~---------k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~ 260 (539)
T KOG0548|consen 206 ---NGFP-----------IIEDNTEERRV---------KEKAHKEKELGNAAYKKKDFETAIQHYAKALELA--TDITYL 260 (539)
T ss_pred ---CCCC-----------ccchhHHHHHH---------HHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHH
Confidence 0000 00000000000 0011122334445555555666666666555543 244444
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTY-------TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
+....+|...+.+..+....+...+.|. -....+ ..+..+|.+.++++.++..|+........|+..
T Consensus 261 ~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l----- 334 (539)
T KOG0548|consen 261 NNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLL----- 334 (539)
T ss_pred HHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH-----
Confidence 4455555555555555555554444331 111112 223345555677777777777765543333221
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQ-ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 533 (647)
.+....++++...+...-.+ |.. .-...-.+.+.+.|++..|...|.+++..+ +.|...|....-+|.+.|.
T Consensus 335 ----s~lk~~Ek~~k~~e~~a~~~--pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~ 407 (539)
T KOG0548|consen 335 ----SKLKEAEKALKEAERKAYIN--PEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE 407 (539)
T ss_pred ----HHHHHHHHHHHHHHHHHhhC--hhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence 22233444554444443322 221 112222556667788888888888888753 3367788888888888888
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..|+.-.+..++.+ ++....|..=+.++....+|++|++.|.+.++.+
T Consensus 408 ~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 408 YPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888877777742 3334466666777777778888888888888776
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.1e-07 Score=78.49 Aligned_cols=326 Identities=13% Similarity=0.061 Sum_probs=184.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhH-HHHHHHHH
Q 006396 206 YTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTY-SILIRGLC 284 (647)
Q Consensus 206 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~ 284 (647)
...+...+...|++..|+.-|....+.+.. +..++..-...|...|+...|+.-+..+.+. +||-..- ..-...+.
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vll 117 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLL 117 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhh
Confidence 344556666777777777777777665211 2223333445677788888888878777765 6664321 12234566
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006396 285 KQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 285 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (647)
++|.+++|..-|+..++.. |+..+ ..++..-+..+. ........+..+...|+...++.
T Consensus 118 K~Gele~A~~DF~~vl~~~--~s~~~-------------~~eaqskl~~~~------e~~~l~~ql~s~~~~GD~~~ai~ 176 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHE--PSNGL-------------VLEAQSKLALIQ------EHWVLVQQLKSASGSGDCQNAIE 176 (504)
T ss_pred hcccHHHHHHHHHHHHhcC--CCcch-------------hHHHHHHHHhHH------HHHHHHHHHHHHhcCCchhhHHH
Confidence 7888888888888887762 32211 111111111110 11122233444556778888888
Q ss_pred HHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC
Q 006396 365 LYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI 444 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 444 (647)
....+++. .++|...+..-..+|...|++..|+.=+....+.. ..+...+..+-..+...|+.+.++...++..+.
T Consensus 177 ~i~~llEi-~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-- 252 (504)
T KOG0624|consen 177 MITHLLEI-QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-- 252 (504)
T ss_pred HHHHHHhc-CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--
Confidence 88877775 34566666677778888888888877776666543 445556666667777778888877777777765
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C--CHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-P--TSATY 521 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p--~~~~~ 521 (647)
.|+....... -..+.+..+.++.|.+ ....+++.++.+..+...+.... + ....+
T Consensus 253 dpdHK~Cf~~------YKklkKv~K~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~ 310 (504)
T KOG0624|consen 253 DPDHKLCFPF------YKKLKKVVKSLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGF 310 (504)
T ss_pred CcchhhHHHH------HHHHHHHHHHHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeee
Confidence 4555422111 1112222333332222 12334555555555555552211 0 12233
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..+-.++...|++.+|++...++++. .|+ ..++..-+.+|.....++.|+.-|+++.+.+
T Consensus 311 r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 311 RVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred heeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 44455555666666666666666653 333 4466666666666666666666666666554
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.6e-08 Score=93.87 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=164.9
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH-------
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV------- 453 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------- 453 (647)
...+.....+..+++.+.+-+....... .+..-++....+|...|.+..+...-....+.|- ....-|+.
T Consensus 227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gr-e~rad~klIak~~~r 303 (539)
T KOG0548|consen 227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGR-ELRADYKLIAKALAR 303 (539)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhH-HHHHHHHHHHHHHHH
Confidence 3456777778888999999998888763 4555667777788888888887777666665542 12222333
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g 532 (647)
+..++.+.++++.++..+.+.......|+.. .+....+++....+...- +.|. ..-...-+..+.+.|
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~l---------s~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLL---------SKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHH---------HHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhcc
Confidence 3345566778888999998877654443322 233445555555555444 3443 233334477888999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE 612 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (647)
++..|...|.+++..+ |.|...|...+-+|.+.|.+..|+.-.+..++.+ |+....|.
T Consensus 373 dy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~---------------------p~~~kgy~ 430 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELD---------------------PNFIKAYL 430 (539)
T ss_pred CHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC---------------------chHHHHHH
Confidence 9999999999999975 5567799999999999999999999999999987 77788888
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.=+.++....+++.|.+.|.+.++.++
T Consensus 431 RKg~al~~mk~ydkAleay~eale~dp 457 (539)
T KOG0548|consen 431 RKGAALRAMKEYDKALEAYQEALELDP 457 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 888999999999999999999998774
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.21 E-value=5.6e-09 Score=100.23 Aligned_cols=236 Identities=23% Similarity=0.164 Sum_probs=102.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcC-----C-CCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhC-----CC-C
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGK-----E-FGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKY-----GL-H 130 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~-~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~-----~~-~ 130 (647)
.+...++..|..+|+++.|+..++.+++. | ..|... ....++..|...+++.+|..+|++++.. |. .
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h 279 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH 279 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence 34445666666666666666666665442 1 012222 2233555556666666666666665542 10 1
Q ss_pred C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-----C-CCCCh-hhHHHHHHHHHhcCChhhHHHHHHHHHhc---CC
Q 006396 131 P-DAFSYNILIHGLCIAGSMEEALEFTNDMGRH-----G-VEPDA-ITYSILAKGFHLLSQISGAWKVIQKLLIK---GS 199 (647)
Q Consensus 131 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~ 199 (647)
| -..+++.|...|.+.|++++|...+++..+. | ..|.+ ..++.++..+...+++++|..+++...+. -+
T Consensus 280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~ 359 (508)
T KOG1840|consen 280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP 359 (508)
T ss_pred HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence 1 1224455555566666666655555544321 0 01111 11233344444455555555554443321 01
Q ss_pred CCC----cchHHHHHHHHHhcCChHHHHHHHHHHHhCC----C--C-cCcccHHHHHHHHHhcCChhHHHHHHHHHHH--
Q 006396 200 DPD----IVTYTVLICGYCQIGNVEEGLKLREVMLSQG----F--K-LNVIAYSVLLSSMCKSGRIDEALGLLYEMEA-- 266 (647)
Q Consensus 200 ~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~--~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-- 266 (647)
.++ ..+++.+...|...|++++|.++++.++... . . -....++.+...|.+.+++.+|.++|.+...
T Consensus 360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~ 439 (508)
T KOG1840|consen 360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM 439 (508)
T ss_pred cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 111 1234444555555555555555554443321 0 0 0122334444444444444444444443221
Q ss_pred --CCCC-C-CHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 267 --VGLK-P-DLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 267 --~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
.|.. | ...+|..|...|...|+++.|+++.+.+
T Consensus 440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 1111 1 1233444444455555555554444443
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.1e-07 Score=91.87 Aligned_cols=191 Identities=13% Similarity=0.008 Sum_probs=103.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCC-CcCHHHHH---HHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDL-KVSIQTYN---SLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQ- 75 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~---~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 75 (647)
++..+...|+.++|...+.+..+... .++..... .++. ..|+++.|.+.+++++...| .+...+.. ...+..
T Consensus 12 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~~~~~ 89 (355)
T cd05804 12 AALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLGAFGL 89 (355)
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHHHHHh
Confidence 34555666677776666666655432 12222111 2222 66777777777777766443 34333332 222222
Q ss_pred ---cCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 76 ---QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 76 ---~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (647)
.|....+...+...... .+........+...+...|++++|...+++..+.. +.+...+..+..++...|++++|
T Consensus 90 ~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 90 GDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred cccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence 33444444444331111 11122334455556667777777777777777664 44455666667777777777777
Q ss_pred HHHHHHHhhCCCC-CCh--hhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 153 LEFTNDMGRHGVE-PDA--ITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 153 ~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
...+++....... ++. ..|..+...+...|++++|..++++...
T Consensus 168 ~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 168 IAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 7777776654221 121 2244566667777777777777777643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.8e-07 Score=77.86 Aligned_cols=332 Identities=11% Similarity=0.084 Sum_probs=230.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHH-HHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFS-YNIL 139 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~l 139 (647)
.++.-...++..++..|++.+|+..|-.+++.++. +-.++..-...|...|+...|+.=+.++++. +||-.. -..-
T Consensus 36 advekhlElGk~lla~~Q~sDALt~yHaAve~dp~-~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 36 ADVEKHLELGKELLARGQLSDALTHYHAAVEGDPN-NYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch-hHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 45555677889999999999999999999985422 3335666677899999999999999999987 777542 2334
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
...+.++|.+++|..-|+...+.. |+..+ ...++.+.-..++-+. ....+..+...|+.
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~~----------------l~~ql~s~~~~GD~ 171 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHWV----------------LVQQLKSASGSGDC 171 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHHH----------------HHHHHHHHhcCCch
Confidence 456789999999999999998763 33221 1112221111111111 22234455678999
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
..|+.....+++.. +.+...+..-..+|...|....|+.-++...+..- -++.++..+-..+...|+.+.++...++.
T Consensus 172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iREC 249 (504)
T KOG0624|consen 172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIREC 249 (504)
T ss_pred hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999998874 44788888899999999999999988888776532 35566667778888899999999999988
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
++. .|+.......- ..+.+..+.++. +....+.++|-++++..+...+..+.....
T Consensus 250 LKl--dpdHK~Cf~~Y------KklkKv~K~les----------------~e~~ie~~~~t~cle~ge~vlk~ep~~~~i 305 (504)
T KOG0624|consen 250 LKL--DPDHKLCFPFY------KKLKKVVKSLES----------------AEQAIEEKHWTECLEAGEKVLKNEPEETMI 305 (504)
T ss_pred Hcc--CcchhhHHHHH------HHHHHHHHHHHH----------------HHHHHhhhhHHHHHHHHHHHHhcCCcccce
Confidence 875 45543221111 111111122211 223456778888888888887765442222
Q ss_pred ---chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 380 ---TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 380 ---~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
.+..+-.++...+++.+|++...++.... +.|+.++..-..+|.....++.|+.-|+...+.+
T Consensus 306 r~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d-~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 306 RYNGFRVLCTCYREDEQFGEAIQQCKEVLDID-PDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred eeeeeheeeecccccCCHHHHHHHHHHHHhcC-chHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 34445567777888999999988888752 3447788888888888888999999888888763
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.2e-07 Score=89.65 Aligned_cols=200 Identities=13% Similarity=-0.025 Sum_probs=101.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCC-CcCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEF-GPSV-VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
.+..|..++..+...|+++.+...+.+.....+ .++. .........+...|++++|...++++.+.. +.+...+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~- 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKL- 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHH-
Confidence 344555666666666666666665555543322 1121 223333334556677777777777766652 333333331
Q ss_pred HHHHH----hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 140 IHGLC----IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 140 ~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
...+. ..+....+.+.++.... ..+........+...+...|++++|.+.+++....... +...+..+..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~ 160 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPLWAP-ENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEM 160 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhccCc-CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHH
Confidence 11111 23334444444433111 11112223334445566666777777777666665322 34455566666666
Q ss_pred cCChHHHHHHHHHHHhCCCC-cCc--ccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 216 IGNVEEGLKLREVMLSQGFK-LNV--IAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 216 ~~~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
.|++++|...++........ ++. ..|..+...+...|++++|..++++..
T Consensus 161 ~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 161 QGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 67777777766666554221 111 123345666666677777777766654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.6e-07 Score=79.09 Aligned_cols=352 Identities=13% Similarity=0.082 Sum_probs=200.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH-HHHHH
Q 006396 170 TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV-LLSSM 248 (647)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~ 248 (647)
-+.+.+..+.+..++..|++++..-.+...+ +....+.+..+|....++..|-..++.+... .|...-|.. -.+.+
T Consensus 12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL 88 (459)
T KOG4340|consen 12 EFTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL 88 (459)
T ss_pred chHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence 3455555566667777777777666555221 4455666666777777777777777777655 233333322 34556
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHhhHHHHH--HHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHH
Q 006396 249 CKSGRIDEALGLLYEMEAVGLKPDLVTYSILI--RGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITE 326 (647)
Q Consensus 249 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 326 (647)
.+.+.+..|+++...|.+. ++...-..-+ ......+++..+..++++.... .+..+.........+.|+++.
T Consensus 89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCllykegqyEa 162 (459)
T KOG4340|consen 89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLLYKEGQYEA 162 (459)
T ss_pred HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---CccchhccchheeeccccHHH
Confidence 6677778888887777642 2222111111 2233567777777777776532 244445555555667888888
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccch----HHHHHHHHhcCCHHHHHHHHH
Q 006396 327 ARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTF----NSLIYGFCKNGKVADARRLLD 402 (647)
Q Consensus 327 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~a~~~~~ 402 (647)
|.+-|....+.+.-.+...|+..+ ++.+.|+.+.|++...+++++|++..+..- ...+.+- ..|+. ..+..
T Consensus 163 AvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh~ 237 (459)
T KOG4340|consen 163 AVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLHQ 237 (459)
T ss_pred HHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHHH
Confidence 888888887766555556666544 455678899999999999888765333211 0011100 00110 00000
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 006396 403 TIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK-AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP 481 (647)
Q Consensus 403 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 481 (647)
.. -...+|.-...+.+.++++.|.+.+-+|..+ ....|++|...+.-. --.+++.+...-+.-+.... |-
T Consensus 238 Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~n-Pf 308 (459)
T KOG4340|consen 238 SA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQN-PF 308 (459)
T ss_pred HH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcC-CC
Confidence 00 1123444445567788889888888888643 223456665544322 12345555555555555543 44
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHh-hcCChhhHHHHHHHHH
Q 006396 482 DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-PTSATYNILIDGLC-VNGDLKNADCLLVSLQ 545 (647)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 545 (647)
...||..++-.||+..-++.|-.++.+-...... .+...|+. ++++. ..-..++|.+-+..+.
T Consensus 309 P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 309 PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 5678888888899888888887777654321111 12333433 33333 3345666666555544
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=2.3e-10 Score=72.73 Aligned_cols=49 Identities=41% Similarity=0.924 Sum_probs=23.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
||..+|+.++++|++.|++++|.++|++|.+.|+.||..||+.++++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 3444444444444444444444444444444444444444444444443
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.6e-10 Score=72.51 Aligned_cols=49 Identities=43% Similarity=0.837 Sum_probs=34.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC 494 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 494 (647)
||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 5666777777777777777777777777777777777777777776665
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.12 E-value=2.9e-07 Score=78.82 Aligned_cols=355 Identities=16% Similarity=0.140 Sum_probs=164.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHH-HHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNI-LIHGLC 144 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~ 144 (647)
++..+..+.+..++.+|++++..-.+..+. +...+..+..+|....++..|-.-++++... .|...-|.. -...+.
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY 89 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence 555555666666777777766665554322 4555666666666667777777777666654 344333322 234445
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChh--hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAI--TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
+.+.+.+|+.+...|... ++.. +...-..+....+++..+..+.++....| +..+.+.......+.|+++.|
T Consensus 90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA 163 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA 163 (459)
T ss_pred HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence 566666666666666321 1111 11111112223455555555555543211 233333333344455555555
Q ss_pred HHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 223 LKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
.+-|+...+-+--.....|+ +.-+..+.|+++.|++...++.+.|++..... +. |.. ..
T Consensus 164 vqkFqaAlqvsGyqpllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPEl-gI--------Gm~-----------te 222 (459)
T KOG4340|consen 164 VQKFQAALQVSGYQPLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPEL-GI--------GMT-----------TE 222 (459)
T ss_pred HHHHHHHHhhcCCCchhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCcc-Cc--------cce-----------ec
Confidence 55555554432111222333 22233344455555555555555444311110 00 000 00
Q ss_pred CCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCccch
Q 006396 303 RISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISPSIVTF 381 (647)
Q Consensus 303 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 381 (647)
| ||.... ..-..+.... -...+|.-...+.+.|+++.|.+.+.+|.-+ ....|+.|.
T Consensus 223 g--iDvrsv-------------gNt~~lh~Sa-------l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTL 280 (459)
T KOG4340|consen 223 G--IDVRSV-------------GNTLVLHQSA-------LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTL 280 (459)
T ss_pred c--Cchhcc-------------cchHHHHHHH-------HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhh
Confidence 0 000000 0000000000 1223444455566778888888877776432 122355555
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHH-H
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPTHVTYTVVIKGL-C 459 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~-~ 459 (647)
..+.-.- ..+++....+-+.-+.... +-...||..++-.|++..-++-|-.++.+-...-. -.+...|+.+ .++ .
T Consensus 281 HN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LL-daLIt 357 (459)
T KOG4340|consen 281 HNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLL-DALIT 357 (459)
T ss_pred hHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHH-HHHHh
Confidence 4443322 2334444444444444443 34456777778888888777777777654322110 1122333322 232 2
Q ss_pred hcCCHHHHHHHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMY 475 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~ 475 (647)
-.-.++++.+-++.+.
T Consensus 358 ~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 358 CQTAPEEAFKKLDGLA 373 (459)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 2345566655554443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.3e-05 Score=86.15 Aligned_cols=340 Identities=13% Similarity=0.009 Sum_probs=210.7
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCC------CCc--HHHHHHHHHHHH
Q 006396 283 LCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNC------IQD--VVLYNIMIDGYV 354 (647)
Q Consensus 283 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~ 354 (647)
....|+++.+..+++.+.......++.........+...++++++...+......-. .+. ......+...+.
T Consensus 384 l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 463 (903)
T PRK04841 384 LFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI 463 (903)
T ss_pred HHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH
Confidence 445677777766666542211112222333344455677888888888877654211 111 112223344566
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC--CHHHHHHHHHHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSI----VTFNSLIYGFCKNGKVADARRLLDTIKLHGL---EP--SAVTYTTFMNAYCE 425 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~ 425 (647)
..|+++.|...++.........+. ...+.+...+...|+++.|...+.......- .+ .......+...+..
T Consensus 464 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~ 543 (903)
T PRK04841 464 NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFA 543 (903)
T ss_pred hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHH
Confidence 789999999999988764211121 2334455667789999999999888764211 11 12344556677888
Q ss_pred cCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHHH
Q 006396 426 EGNIQRLLALLQEMETK----AIG--P-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG--VTP--DQITYNTIIRSFC 494 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~--~~~~~~~l~~~~~ 494 (647)
.|+++.|...+++.... +.. + ....+..+...+...|++++|...+++..... ..+ ....+..+...+.
T Consensus 544 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~ 623 (903)
T PRK04841 544 QGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISL 623 (903)
T ss_pred CCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHH
Confidence 99999999988876542 211 1 22334455566777899999999988876531 112 2334445666778
Q ss_pred hcCCHHHHHHHHHHHHhC--CCCCCHH--H--HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHh
Q 006396 495 KCKDLRKAFQLLNQMWLH--NLEPTSA--T--YNILIDGLCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCA 565 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~--~~~p~~~--~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~ 565 (647)
..|+++.|.+.+..+... ....... . ....+..+...|+.+.|..++............ ..+..+..++..
T Consensus 624 ~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~ 703 (903)
T PRK04841 624 ARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQIL 703 (903)
T ss_pred HcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHH
Confidence 899999999999887651 1111111 1 111224445688999999988776542111111 124567788899
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.|++++|...++++.... ...+.+. ...+...++.++.+.|+.++|.+.+.++++..
T Consensus 704 ~g~~~~A~~~l~~al~~~----------------~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 704 LGQFDEAEIILEELNENA----------------RSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred cCCHHHHHHHHHHHHHHH----------------HHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999987642 1111222 24567788899999999999999999988653
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.2e-05 Score=75.13 Aligned_cols=185 Identities=13% Similarity=0.146 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKA-IGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
.+++..+++..+..-...+..+|..+...--..- ..+.....++...... +.|+ .+|...++.-.+..-.+.|..
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~ 387 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARK 387 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHH
Confidence 3556666665554322233333433332211112 2556666666665542 2333 457777777778888999999
Q ss_pred HHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 470 LLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 470 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
+|.++.+.+..+ +..+..+++..|+. +|..-|.++|+--++. ...++.--...++-+...++-..|..+|++....+
T Consensus 388 iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~ 465 (656)
T KOG1914|consen 388 IFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSV 465 (656)
T ss_pred HHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhcc
Confidence 999999877666 66777888887764 8999999999988773 23345555677788888899999999999999876
Q ss_pred CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 549 ISLTK--VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 549 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++++. ..|..++.--..-|+...++++-++...
T Consensus 466 l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 466 LSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred CChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 66654 4899999988889999999888877654
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.5e-08 Score=92.44 Aligned_cols=259 Identities=12% Similarity=0.071 Sum_probs=170.3
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
+.+.|++.+|.-.|+..+...+. +...|..|.......++-..|+..+.+..+.. +.+...+..|.-.|...|.-..|
T Consensus 295 lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~A 372 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQA 372 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHH
Confidence 44556666666666666665433 55566666666666666666666666666543 34455566666666666666666
Q ss_pred HHHHHHHHhCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 433 LALLQEMETKAIG--------PTHVTYTVVIKGLCKQWKLQEAVQLLEDM-YVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 433 ~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
+..|+.-.....+ ++...-.. ..+.....+....++|-++ ...+..+|+.+...|.-.|.-.|++++|.
T Consensus 373 l~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdrai 450 (579)
T KOG1125|consen 373 LKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAV 450 (579)
T ss_pred HHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHH
Confidence 6666655432100 00000000 0111112233444444444 44554578888889999999999999999
Q ss_pred HHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 504 QLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 504 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+|+.++. ++| |..+||.|+..++...+.++|+..|+++++ +.|+.. +...++-.|...|.+++|.+.|-.++.
T Consensus 451 Dcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 451 DCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999998 667 689999999999999999999999999998 678765 888899999999999999999998875
Q ss_pred cCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 582 KGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
..-. +..+ .....++..+|..|=.++.-.++.|-+.++
T Consensus 527 mq~k-s~~~----------~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 527 MQRK-SRNH----------NKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhhc-cccc----------ccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 3300 0000 000112457888887888888877755443
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=4.3e-05 Score=84.09 Aligned_cols=372 Identities=10% Similarity=-0.023 Sum_probs=222.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV 289 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (647)
...+...|++.+|.......... ..-..............|+++.+...+..+.......+..........+...|++
T Consensus 348 a~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~ 425 (903)
T PRK04841 348 AEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRY 425 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCH
Confidence 34455566666665544332111 0000111122233455677777777766653211111222233444555677899
Q ss_pred HHHHHHHHHHHhCCCC------CCc--ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHHhcC
Q 006396 290 HKAIQLYNEMCSKRIS------PNS--FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDV----VLYNIMIDGYVKLG 357 (647)
Q Consensus 290 ~~a~~~~~~~~~~~~~------~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~ 357 (647)
+++..++......--. +.. .........+...|++++|...++.........+. ...+.+...+...|
T Consensus 426 ~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G 505 (903)
T PRK04841 426 SEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKG 505 (903)
T ss_pred HHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcC
Confidence 9999888877543100 111 11122234456788999999999887653211221 23455666778899
Q ss_pred CHHHHHHHHHHHHHCCCC---C--CccchHHHHHHHHhcCCHHHHHHHHHHHHH----CCCC--C-CHHHHHHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRIS---P--SIVTFNSLIYGFCKNGKVADARRLLDTIKL----HGLE--P-SAVTYTTFMNAYCE 425 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~--~-~~~~~~~l~~~~~~ 425 (647)
+++.|...+++....... + ...+...+...+...|+++.|...+++... .+.. + ....+..+...+..
T Consensus 506 ~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 585 (903)
T PRK04841 506 ELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWE 585 (903)
T ss_pred CHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHH
Confidence 999999999887753111 1 122344556677889999999998887654 2211 1 22334455566777
Q ss_pred cCCHHHHHHHHHHHHhC--CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHh
Q 006396 426 EGNIQRLLALLQEMETK--AIGPT--HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PDQITY-----NTIIRSFCK 495 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~--~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~-----~~l~~~~~~ 495 (647)
.|++++|...+.+.... ...+. ...+..+...+...|++++|...++.+...... .....+ ...+..+..
T Consensus 586 ~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (903)
T PRK04841 586 WARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQM 665 (903)
T ss_pred hcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHH
Confidence 89999999998876542 11122 234444566777899999999998887652111 111111 112244456
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcC
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT-KVAYTTIIKAHCAEG 567 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g 567 (647)
.|+.+.|..++........... ...+..+..++...|++++|...++++... |...+ ..+...+..++...|
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G 745 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQG 745 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcC
Confidence 7899999999877654211111 112456778888999999999999988753 22222 235667788899999
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
+.++|...+.++++..
T Consensus 746 ~~~~A~~~L~~Al~la 761 (903)
T PRK04841 746 RKSEAQRVLLEALKLA 761 (903)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999998765
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.4e-08 Score=92.08 Aligned_cols=252 Identities=14% Similarity=0.098 Sum_probs=141.5
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVA 395 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (647)
+-+.-.|.+..++.-.+ ........+......+.+++...|+.+.++ ..+... ..|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~-~~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKS-SSPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TT-SSCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccC-CChhHHHHHHHHHHHhCccchH
Confidence 34455677777776555 222222223334455667777788766543 232222 2455555555555444434445
Q ss_pred HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 396 DARRLLDTIKLHGLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 396 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
.+..-++........+ +..........+...|+++.|++++... .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5544444433332222 2222222234455667788777776542 35566666777778888888888888887
Q ss_pred HHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC
Q 006396 475 YVIGVTPDQITYNTIIRSFC----KCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550 (647)
Q Consensus 475 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 550 (647)
.+. ..| .+...+..++. ..+.+.+|..+|+++.+. ..+++.+.+.++.++...|++++|.+++.++.+.+ +
T Consensus 158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~ 232 (290)
T PF04733_consen 158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-P 232 (290)
T ss_dssp HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--C
T ss_pred Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-c
Confidence 764 233 33333444433 223577888888887653 45677777778888888888888888887777643 3
Q ss_pred CCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHHcC
Q 006396 551 LTKVAYTTIIKAHCAEGDV-HKAMTFFCQMVEKG 583 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~ 583 (647)
-++.++..++-+....|+. +.+.+++.++....
T Consensus 233 ~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~ 266 (290)
T PF04733_consen 233 NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN 266 (290)
T ss_dssp CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence 3455777777777777777 55666777766654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.03 E-value=7e-08 Score=90.51 Aligned_cols=229 Identities=14% Similarity=0.026 Sum_probs=134.9
Q ss_pred cCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH
Q 006396 29 VSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRY 108 (647)
Q Consensus 29 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (647)
|++.--.-.+-+-|++..|.-+|+.++..+| .+.++|..|+......++-..|+..++++++..+. +..++..++.+|
T Consensus 286 pdPf~eG~~lm~nG~L~~A~LafEAAVkqdP-~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSy 363 (579)
T KOG1125|consen 286 PDPFKEGCNLMKNGDLSEAALAFEAAVKQDP-QHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSY 363 (579)
T ss_pred CChHHHHHHHHhcCCchHHHHHHHHHHhhCh-HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHH
Confidence 4443333333355667777777777766554 66777777777777777777777777777776533 566777777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH---------HHHHhcCCHHHHHHHHHHHhh-CCCCCChhhHHHHHHHH
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI---------HGLCIAGSMEEALEFTNDMGR-HGVEPDAITYSILAKGF 178 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~ 178 (647)
...|.-..|...++..++.. +|-. |.... ..+.....+....++|-++.. .+..+|+.....|.-.|
T Consensus 364 tNeg~q~~Al~~L~~Wi~~~-p~y~--~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy 440 (579)
T KOG1125|consen 364 TNEGLQNQALKMLDKWIRNK-PKYV--HLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLY 440 (579)
T ss_pred hhhhhHHHHHHHHHHHHHhC-ccch--hccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHH
Confidence 77777777777777776542 1110 10000 000111122333444444433 23335666666666666
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC-cccHHHHHHHHHhcCChhHH
Q 006396 179 HLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN-VIAYSVLLSSMCKSGRIDEA 257 (647)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a 257 (647)
--.|++++|...|+..+...+. |...|+.|...+....+.++|+..|.+.++. +|+ +.+...|.-.|...|.+++|
T Consensus 441 ~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA 517 (579)
T KOG1125|consen 441 NLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEA 517 (579)
T ss_pred hcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHH
Confidence 6667777777777776665222 4556677666666666677777777776665 333 34555666666677777776
Q ss_pred HHHHHHHH
Q 006396 258 LGLLYEME 265 (647)
Q Consensus 258 ~~~~~~~~ 265 (647)
.+.|-...
T Consensus 518 ~~hlL~AL 525 (579)
T KOG1125|consen 518 VKHLLEAL 525 (579)
T ss_pred HHHHHHHH
Confidence 66665543
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-07 Score=94.14 Aligned_cols=236 Identities=14% Similarity=0.051 Sum_probs=164.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcC-CCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHH
Q 006396 50 LYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGK-EFGPS---VVSLNAIMSRYCKLGFAEVAKGLFCLML 125 (647)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~g~~~~a~~~~~~~~ 125 (647)
-|+.... +.|.+...|...+...++.++.++|+.++++++.. ++.-. ..+|.+++......|.-+...++|+++.
T Consensus 1446 Dferlvr-ssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAc 1524 (1710)
T KOG1070|consen 1446 DFERLVR-SSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERAC 1524 (1710)
T ss_pred HHHHHHh-cCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHH
Confidence 4444444 33366777888888888888888888888888753 22211 2267777777777787778888888888
Q ss_pred hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-Ccc
Q 006396 126 KYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIV 204 (647)
Q Consensus 126 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~ 204 (647)
+.- ..-..|..|...|.+.+.+++|-++++.|.+. +......|...+..+.+.++-+.|..++.+..+.-++. ...
T Consensus 1525 qyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~ 1601 (1710)
T KOG1070|consen 1525 QYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVE 1601 (1710)
T ss_pred Hhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHH
Confidence 752 22346778888888888888888888888776 44567788888888888888888888888887652221 122
Q ss_pred hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHH
Q 006396 205 TYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL--VTYSILIRG 282 (647)
Q Consensus 205 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~ 282 (647)
.....+..-.+.|+.+.+..+|+..+...++ -...|+.+++.-.+.|+.+.++.+|+++...++.|-. ..|...+..
T Consensus 1602 ~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1602 FISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred HHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 3444555566778888888888888876433 5667888888888888888888888888877665432 344444444
Q ss_pred HHccCCHH
Q 006396 283 LCKQDKVH 290 (647)
Q Consensus 283 ~~~~~~~~ 290 (647)
--+.|+-+
T Consensus 1681 Ek~~Gde~ 1688 (1710)
T KOG1070|consen 1681 EKSHGDEK 1688 (1710)
T ss_pred HHhcCchh
Confidence 44444433
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.94 E-value=4.7e-05 Score=71.41 Aligned_cols=186 Identities=12% Similarity=0.142 Sum_probs=125.0
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 324 ITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG---NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.+++..+++..+..-...+..+|..+...--..- ..+....++.+++.....--.-+|...+....+..-++.|..+
T Consensus 309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i 388 (656)
T KOG1914|consen 309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI 388 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence 3455566665554322223333433332211111 2556666777666543232345677788888888889999999
Q ss_pred HHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 006396 401 LDTIKLHGLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 401 ~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 479 (647)
|.+..+.+..+ ++...++++..|+ .++..-|.++|+--.++- ..+..--...+.-+...++-..+..+|++....++
T Consensus 389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf-~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l 466 (656)
T KOG1914|consen 389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKF-GDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVL 466 (656)
T ss_pred HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhc-CCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccC
Confidence 99998877666 6777788888665 477888999998766542 22333344556667778888899999999988765
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 480 TPD--QITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 480 ~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+++ ..+|..++.--..-|++..+.++-++...
T Consensus 467 ~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 467 SADKSKEIWDRMLEYESNVGDLNSILKLEKRRFT 500 (656)
T ss_pred ChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 554 46899999888889999988888877665
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.93 E-value=6.8e-08 Score=87.57 Aligned_cols=257 Identities=12% Similarity=0.022 Sum_probs=166.7
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCH
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNI 359 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 359 (647)
++-+.-.|++..++.-.+ .....-.........+.+++...|+.+.+.. .+.... .|.......+...+...++-
T Consensus 8 vrn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~---ei~~~~-~~~l~av~~la~y~~~~~~~ 82 (290)
T PF04733_consen 8 VRNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVLS---EIKKSS-SPELQAVRLLAEYLSSPSDK 82 (290)
T ss_dssp HHHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHHH---HS-TTS-SCCCHHHHHHHHHHCTSTTH
T ss_pred HHHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHHH---HhccCC-ChhHHHHHHHHHHHhCccch
Confidence 455667799999887666 2222111223344566788888888775543 333333 55555555555544443455
Q ss_pred HHHHHHHHHHHHCCCCCCccch-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTF-NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQE 438 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 438 (647)
+.+..-++........+...++ ......+...|++++|.+++... .+.......+..|.+.++++.|.+.++.
T Consensus 83 e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~ 156 (290)
T PF04733_consen 83 ESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKN 156 (290)
T ss_dssp HCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555554433222122222 23334566789999998887642 4567778889999999999999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 439 METKAIGPTHVTYTVVIKGLC----KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 439 ~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
|.+. ..|. +...+..++. ...++.+|..+|+++.+. .++++.+++.+..+....|++++|.+++.+....+
T Consensus 157 ~~~~--~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~- 231 (290)
T PF04733_consen 157 MQQI--DEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD- 231 (290)
T ss_dssp HHCC--SCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--
T ss_pred HHhc--CCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-
Confidence 9875 3343 3444444433 234689999999998765 57889999999999999999999999999988743
Q ss_pred CCCHHHHHHHHHHHhhcCCh-hhHHHHHHHHHHcCCCCCHH
Q 006396 515 EPTSATYNILIDGLCVNGDL-KNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~ 554 (647)
+-++.+...++.+....|+. +.+.+++.++... .|+..
T Consensus 232 ~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~--~p~h~ 270 (290)
T PF04733_consen 232 PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS--NPNHP 270 (290)
T ss_dssp CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH--TTTSH
T ss_pred cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh--CCCCh
Confidence 33588888888888888888 6678888888874 45433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.5e-07 Score=80.47 Aligned_cols=156 Identities=8% Similarity=0.015 Sum_probs=116.0
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+..|+..|+++.+....++.... .. -....++.+++...++..+...+ .+...|..++..+...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~----~~-----~~~~~~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADP----LH-----QFASQQTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCc----cc-----cccCchhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHH
Confidence 35688888888876665433221 10 00124566788888888887665 7888999999999999999999
Q ss_pred HHHHHHhhcCCCCcCHHhHHHHHHHH-HhcCC--hhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFGPSVVSLNAIMSRY-CKLGF--AEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
...|+++....+. +...+..+..++ ...|+ .++|.++++++++.+ +.+..++..+...+...|++++|...|+++
T Consensus 93 ~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 93 LLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999887643 677777777764 66676 589999999999886 557778888888888999999999999998
Q ss_pred hhCCCCCChhhH
Q 006396 160 GRHGVEPDAITY 171 (647)
Q Consensus 160 ~~~~~~~~~~~~ 171 (647)
.+. .+|+..-+
T Consensus 171 L~l-~~~~~~r~ 181 (198)
T PRK10370 171 LDL-NSPRVNRT 181 (198)
T ss_pred Hhh-CCCCccHH
Confidence 887 34454443
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.91 E-value=3.8e-07 Score=78.00 Aligned_cols=148 Identities=14% Similarity=0.148 Sum_probs=98.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDL 499 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (647)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+.. +.+...|..+...|...|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCH
Confidence 3456777877776444322211 11 01123556677777777766654 66777788888888888888
Q ss_pred HHHHHHHHHHHhCCCCC-CHHHHHHHHHHH-hhcCC--hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEP-TSATYNILIDGL-CVNGD--LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
++|...+++..+ +.| +...+..+..++ ...|+ .++|.++++++.+.+ +.+..++..++..+...|++++|+..
T Consensus 90 ~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~ 166 (198)
T PRK10370 90 DNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQADYAQAIEL 166 (198)
T ss_pred HHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888777 344 577777777753 56666 478888888888753 34556777777788888888888888
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
|+++++..
T Consensus 167 ~~~aL~l~ 174 (198)
T PRK10370 167 WQKVLDLN 174 (198)
T ss_pred HHHHHhhC
Confidence 88887766
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.91 E-value=0.0001 Score=73.68 Aligned_cols=224 Identities=14% Similarity=0.070 Sum_probs=118.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..+++..|.+...++....| ....+--.=+-.+.+.|+.++|..+++.....+.. |..++..+-..|.+.|+.++|..
T Consensus 21 d~~qfkkal~~~~kllkk~P-n~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKKHP-NALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhHHHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence 44566666666666655221 22222222222445777777777666655544332 55566666666777777777777
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC----------hhhHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----------ISGAWK 189 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~ 189 (647)
+|+++.+. .|+......+..+|+|.+++.+-.+.--++-+. .+-+...+=+++..+..... ..-|.+
T Consensus 99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 77777765 455555566666666666655443333333332 23333333333333332110 123445
Q ss_pred HHHHHHhcC-CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh-CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 190 VIQKLLIKG-SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS-QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 190 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
.++.+.+.+ ..-+..-.......+...|.+++|.+++..-.. .-...+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 555555543 111222233333445567778888887743332 222223333345566677777777777777777766
Q ss_pred C
Q 006396 268 G 268 (647)
Q Consensus 268 ~ 268 (647)
|
T Consensus 256 ~ 256 (932)
T KOG2053|consen 256 G 256 (932)
T ss_pred C
Confidence 4
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.91 E-value=2.5e-07 Score=83.03 Aligned_cols=187 Identities=14% Similarity=0.058 Sum_probs=120.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-H---VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI-- 484 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-- 484 (647)
.....+..+...+...|+++.|...|+++.... |+ . ..+..+..++...|++++|...++++.+.. +.+..
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~ 107 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDAD 107 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchH
Confidence 445566667777777888888888888776652 32 1 355666777777788888888888877643 21221
Q ss_pred -HHHHHHHHHHhc--------CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 485 -TYNTIIRSFCKC--------KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 485 -~~~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
++..+..++... |+.+.|.+.++.+... .|+ ...+..+...... .. .. ..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~~----~~-------~~-------~~ 167 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDYL----RN-------RL-------AG 167 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHHH----HH-------HH-------HH
Confidence 344445555443 5677777777777763 343 2222222111100 00 00 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
....++..+...|++++|+..++++++.. |+ -|.....+..++.++.+.|++++|..+++.+
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~----------------~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENY--PD----------------TPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHC--CC----------------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 12356677899999999999999999864 00 1334689999999999999999999999988
Q ss_pred HhCC
Q 006396 635 IKSG 638 (647)
Q Consensus 635 ~~~~ 638 (647)
....
T Consensus 230 ~~~~ 233 (235)
T TIGR03302 230 GANY 233 (235)
T ss_pred HhhC
Confidence 7764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.8e-08 Score=78.38 Aligned_cols=96 Identities=7% Similarity=-0.136 Sum_probs=66.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
+......+...|++++|...|+.++... +.+...|..++.++...|++++|...|+++.+.+ +.+...+..++.++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence 4455666667777777777777777632 2256677777777777777777777777777643 4455677777777777
Q ss_pred cCCHHHHHHHHHHHHHcC
Q 006396 566 EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~ 583 (647)
.|++++|+..|+++++..
T Consensus 105 ~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMS 122 (144)
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 777777777777777765
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.1e-07 Score=92.77 Aligned_cols=234 Identities=13% Similarity=0.081 Sum_probs=163.0
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEP---SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYT 452 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 452 (647)
+...|-..|..+...++.++|+++.+++... ++.- -...|.++++.-..-|.-+...++|+++.+.. .....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 4556777777777888888888888877653 1111 12356666666666677777888888877642 2334577
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHh
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLC 529 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~ 529 (647)
.|...|.+.+.+++|.++++.|.+. +.-....|...+....+..+-+.|..++.++++. -| ........+..-.
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLEF 1611 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLEF 1611 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHHh
Confidence 7778888888888888888888875 3456677888888888888888888888888873 33 3444455556666
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC--
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-- 607 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 607 (647)
+.|+.+.+..+|+..+.. .|.-...|+.+++.-.++|+.+.++.+|++++..+ ++|.
T Consensus 1612 k~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~--------------------l~~kkm 1670 (1710)
T KOG1070|consen 1612 KYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK--------------------LSIKKM 1670 (1710)
T ss_pred hcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC--------------------CChhHh
Confidence 788888888888888764 34556688888888888888888888888888877 3332
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
-..|..++.---..|+-+.+..+=.++.+
T Consensus 1671 KfffKkwLeyEk~~Gde~~vE~VKarA~E 1699 (1710)
T KOG1070|consen 1671 KFFFKKWLEYEKSHGDEKNVEYVKARAKE 1699 (1710)
T ss_pred HHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 44555666555566776666555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.89 E-value=4.3e-06 Score=77.04 Aligned_cols=220 Identities=6% Similarity=-0.024 Sum_probs=125.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH--HHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG-NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL--QEA 467 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~a 467 (647)
.+..++|.....+++... +-+...|+....++...+ ++++++..++.+.+.+ +.+..+|+.....+.+.|+. +++
T Consensus 50 ~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~~~e 127 (320)
T PLN02789 50 DERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAANKE 127 (320)
T ss_pred CCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhhHHH
Confidence 345556666666655532 222334444444444444 4566677666666553 33444555444444444442 556
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CCh----hhHHHH
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN---GDL----KNADCL 540 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~ 540 (647)
+.+++++++.. +-+..+|.....++...|+++++++.++++++.+ .-+...|+....++.+. |+. +++...
T Consensus 128 l~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 128 LEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 66776776654 4566677777777777777777777777777743 22455666655555443 222 356666
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 541 LVSLQEHNISLTKVAYTTIIKAHCAE----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
..+++... +-|...|..+...+... ++..+|...+.++.+.+ +....+...|+.
T Consensus 206 ~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~---------------------~~s~~al~~l~d 263 (320)
T PLN02789 206 TIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD---------------------SNHVFALSDLLD 263 (320)
T ss_pred HHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc---------------------CCcHHHHHHHHH
Confidence 66666642 44556777766666652 34455777777766544 445566666666
Q ss_pred HHHcCC------------------CHHHHHHHHHHHHh
Q 006396 617 AFHQGG------------------DLGSVFELAAVMIK 636 (647)
Q Consensus 617 ~~~~~g------------------~~~~A~~~~~~~~~ 636 (647)
.|.... ..++|.++++.+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~ 301 (320)
T PLN02789 264 LLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEV 301 (320)
T ss_pred HHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHh
Confidence 665432 34667777777743
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-06 Score=74.09 Aligned_cols=157 Identities=19% Similarity=0.169 Sum_probs=89.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+-..+...|+-+....+........ +.+.......+....+.|++..|+..+.+..... ++|...|+.+.-+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence 444445555555555555554433221 2233344445556666666666666666666543 55666666666666666
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|+++.|..-|.+..+ +.| ++...+.+...|.-.|+++.|..++......+ +-|..+-..+..+....|++.+|.++
T Consensus 148 Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i 224 (257)
T COG5010 148 GRFDEARRAYRQALE--LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDI 224 (257)
T ss_pred cChhHHHHHHHHHHH--hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhh
Confidence 666666666666666 333 35555666666666666666666666666532 22444555566666666666666665
Q ss_pred HHH
Q 006396 576 FCQ 578 (647)
Q Consensus 576 ~~~ 578 (647)
...
T Consensus 225 ~~~ 227 (257)
T COG5010 225 AVQ 227 (257)
T ss_pred ccc
Confidence 443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.85 E-value=4e-07 Score=87.95 Aligned_cols=218 Identities=13% Similarity=0.131 Sum_probs=177.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 006396 344 VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAY 423 (647)
Q Consensus 344 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 423 (647)
..-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.+. +|++..|..+.+..
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~ 467 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVL 467 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhc
Confidence 344556777888899999999998764 4566788999999999999998888874 78999999888887
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 424 CEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
....-+++|.++.+..... .-..+.......++++++.+.|+.-.+.. +....+|-....+..+.++++.|.
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHH
Confidence 7777789999988876543 11122222344789999999999888764 566778888888889999999999
Q ss_pred HHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 504 QLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 504 ~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+.|...+. ..|+ ...||.+..+|.+.|+..+|...++++.+.+ ..+...|..........|.+++|++.+.++...
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence 99999988 6775 8899999999999999999999999999876 556668888888889999999999999998864
Q ss_pred C
Q 006396 583 G 583 (647)
Q Consensus 583 ~ 583 (647)
.
T Consensus 617 ~ 617 (777)
T KOG1128|consen 617 R 617 (777)
T ss_pred h
Confidence 3
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.6e-06 Score=77.53 Aligned_cols=210 Identities=12% Similarity=0.001 Sum_probs=124.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG-FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
-.++...++.++|+..+.+++...+. +..+|+.-..++...| ++++++..++++.+.+ +.+..+|+.....+.+.|+
T Consensus 44 ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 44 RAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 33444566777777777777765432 3445665555666666 4677777777777654 3444455554444444444
Q ss_pred H--HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhc---CC----h
Q 006396 149 M--EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQI---GN----V 219 (647)
Q Consensus 149 ~--~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~----~ 219 (647)
. +++..+++.+.+.. +.+..+|+...-++...|+++++++.++++++.++. +..+|+.....+.+. |. .
T Consensus 122 ~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 122 DAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccH
Confidence 2 55666776666653 346667777777777777777777777777766433 455555554444333 22 2
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKS----GRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
+..++....++...+. +...|+.+...+... ++..+|.+.+.+....+ ..+......++..|+.
T Consensus 200 e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 200 DSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHh
Confidence 4556666566655433 666777777777663 33455777776665543 2245566666776664
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=84.40 Aligned_cols=215 Identities=12% Similarity=0.045 Sum_probs=173.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
.-..+...+...|-...|..+++++. .|..++.+|...|+..+|..+..+-.++ +|++..|..+.+...
T Consensus 400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH 468 (777)
T ss_pred HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence 33456777888899999999998765 4666788999999999999998887774 789999988888877
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
...-+++|.++.+..-.. .-..+.......++++++.+.|+.-.+ +.| -..+|-.++.+..+.++++.|.
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~--~nplq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLE--INPLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhh--cCccchhHHHhccHHHHHHhhhHHHH
Confidence 766678888877654331 112222233457999999999999888 444 5889999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 539 ~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
+.|..... ..|+ ...|+.+..+|.+.|+..+|...++++.+-+ ..+..+|-...-.
T Consensus 540 ~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn---------------------~~~w~iWENymlv 596 (777)
T KOG1128|consen 540 KAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN---------------------YQHWQIWENYMLV 596 (777)
T ss_pred HHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC---------------------CCCCeeeechhhh
Confidence 99999988 3554 5699999999999999999999999999876 4556677777888
Q ss_pred HHcCCCHHHHHHHHHHHHhC
Q 006396 618 FHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 618 ~~~~g~~~~A~~~~~~~~~~ 637 (647)
..+-|.+++|.+.+.++...
T Consensus 597 svdvge~eda~~A~~rll~~ 616 (777)
T KOG1128|consen 597 SVDVGEFEDAIKAYHRLLDL 616 (777)
T ss_pred hhhcccHHHHHHHHHHHHHh
Confidence 88999999999999998754
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00024 Score=71.12 Aligned_cols=520 Identities=14% Similarity=0.089 Sum_probs=281.8
Q ss_pred HhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHH
Q 006396 7 SRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAIL 84 (647)
Q Consensus 7 ~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 84 (647)
+..+++.+|.....+.++..++ +....+.++.. +.|+.++|..+++.....+. .|..+...+-.+|...|+.++|..
T Consensus 20 ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~-~D~~tLq~l~~~y~d~~~~d~~~~ 98 (932)
T KOG2053|consen 20 LDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKG-TDDLTLQFLQNVYRDLGKLDEAVH 98 (932)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCC-CchHHHHHHHHHHHHHhhhhHHHH
Confidence 3467899999999998887432 23334444444 99999999999988776555 477788888999999999999999
Q ss_pred HHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHHHHH
Q 006396 85 FLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAG-S---------MEEALE 154 (647)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~a~~ 154 (647)
+|+++.... |+......+..+|.+.+++.+-.++--++.+. .+.+++.|=++++.+...- . ..-|..
T Consensus 99 ~Ye~~~~~~--P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~ 175 (932)
T KOG2053|consen 99 LYERANQKY--PSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK 175 (932)
T ss_pred HHHHHHhhC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence 999998864 56778888888999998887655554444443 2444555545555554321 1 123555
Q ss_pred HHHHHhhCC-CCCChhhHHHHHHHHHhcCChhhHHHHHHH-HHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 155 FTNDMGRHG-VEPDAITYSILAKGFHLLSQISGAWKVIQK-LLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 155 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
.++.+.+.+ .-.+..-...-...+...+++++|++++.. ....-..-+...-+.-+..+...+++.+..++-.++...
T Consensus 176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 666666543 222233333444556678899999999843 333322223333345567778889999999999998888
Q ss_pred CCCcCcccHHHHHHHHHh----------------cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHH---ccCCHHHHH
Q 006396 233 GFKLNVIAYSVLLSSMCK----------------SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLC---KQDKVHKAI 293 (647)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~----------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~a~ 293 (647)
|.. | |....+.+.+ .+..+...+...+..... ....|-+-+.++. .-|+.+++.
T Consensus 256 ~~D-d---y~~~~~sv~klLe~~~~~~a~~~~s~~~~l~~~~ek~~~~i~~~---~Rgp~LA~lel~kr~~~~gd~ee~~ 328 (932)
T KOG2053|consen 256 GND-D---YKIYTDSVFKLLELLNKEPAEAAHSLSKSLDECIEKAQKNIGSK---SRGPYLARLELDKRYKLIGDSEEML 328 (932)
T ss_pred CCc-c---hHHHHHHHHHHHHhcccccchhhhhhhhhHHHHHHHHHHhhccc---ccCcHHHHHHHHHHhcccCChHHHH
Confidence 643 2 3333332211 112222222222222210 1122333333333 346777665
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCC--cHHH---HHHHHHHHHhcC-----CHHHHH
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQ--DVVL---YNIMIDGYVKLG-----NIGEAV 363 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~---~~~l~~~~~~~~-----~~~~a~ 363 (647)
..|-+-.. ..| .+..=+..|...=.......++.......... |... +...+..-.-.| .-+...
T Consensus 329 ~~y~~kfg--~kp---cc~~Dl~~yl~~l~~~q~~~l~~~l~~~~~~~s~~~k~l~~h~c~l~~~rl~G~~~~l~ad~i~ 403 (932)
T KOG2053|consen 329 SYYFKKFG--DKP---CCAIDLNHYLGHLNIDQLKSLMSKLVLADDDSSGDEKVLQQHLCVLLLLRLLGLYEKLPADSIL 403 (932)
T ss_pred HHHHHHhC--CCc---HhHhhHHHhhccCCHHHHHHHHHHhhccCCcchhhHHHHHHHHHHHHHHHHhhccccCChHHHH
Confidence 44433211 111 11111111211112222222222222211000 0000 111111111112 122222
Q ss_pred HHHHHHH---HCC------CCCCccc---------hHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 364 QLYRQLI---EKR------ISPSIVT---------FNSLIYGFCKNGKVA---DARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 364 ~~~~~~~---~~~------~~~~~~~---------~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
.++++.. ++| .-|+..+ .+.++..|.+.++.. +|+-+++...... +.|..+--.+++.
T Consensus 404 a~~~kl~~~ye~gls~~K~ll~TE~~~g~~~llLav~~Lid~~rktnd~~~l~eaI~LLE~glt~s-~hnf~~KLlLiri 482 (932)
T KOG2053|consen 404 AYVRKLKLTYEKGLSLSKDLLPTEYSFGDELLLLAVNHLIDLWRKTNDLTDLFEAITLLENGLTKS-PHNFQTKLLLIRI 482 (932)
T ss_pred HHHHHHHHHHhccccccccccccccccHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcC-CccHHHHHHHHHH
Confidence 3332221 222 2223322 345677888888765 4444444444432 4455666778899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
|.-.|-+..|.++|+.+--+.+..|...|.. .+-+...|++..+...+....+.--..-..+-..+..+| +.|.+.+.
T Consensus 483 Y~~lGa~p~a~~~y~tLdIK~IQ~DTlgh~~-~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI 560 (932)
T KOG2053|consen 483 YSYLGAFPDAYELYKTLDIKNIQTDTLGHLI-FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKI 560 (932)
T ss_pred HHHhcCChhHHHHHHhcchHHhhhccchHHH-HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhh
Confidence 9999999999999999887777666655433 344566788888877777666531111112223334444 44666655
Q ss_pred HHHHH---HHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 503 FQLLN---QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 503 ~~~~~---~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
.++.. ++.......-..+-+..++.....++.++-...+..|.
T Consensus 561 ~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 561 PEMLAFRDRLMHSLQKWACRVENLQLSLLCNADRGTQLLKLLESMK 606 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHhccc
Confidence 44432 22221111123334555666666777776666666554
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=3.8e-07 Score=73.67 Aligned_cols=123 Identities=10% Similarity=-0.031 Sum_probs=99.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
..+++...+. .|+ .+......+...|++++|...|+.+.... +.+...+..+..++...|++++|...|+.+...
T Consensus 13 ~~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 13 EDILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 4566666654 344 35567778889999999999999999875 668889999999999999999999999999984
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAH 563 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~ 563 (647)
+ +.+...+..++.++...|++++|...|+++++. .|+ ...+.....++
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~--~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM--SYADASWSEIRQNAQ 136 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 2 336899999999999999999999999999985 454 44554444433
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=6e-06 Score=69.41 Aligned_cols=189 Identities=12% Similarity=0.113 Sum_probs=96.8
Q ss_pred cCCHHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 391 NGKVADARRLLDTIKL---HG-LEPSAV-TYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQ 465 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~---~~-~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 465 (647)
..+.++..+++..+.. .| ..++.. .+..+.-+....|+.+-|...++.+...- +-+...-..-...+...|+++
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhchh
Confidence 3556666666666553 12 223322 23333444445566666666666655542 112221111112233456666
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 466 EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+|.++++.+.+.. |.|..++..=+...-..|..-+|++-+...++. +..|...|..+...|...|++++|.-.++++.
T Consensus 104 ~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l 181 (289)
T KOG3060|consen 104 EAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL 181 (289)
T ss_pred hHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence 6666666666544 444445544444444455555666655555553 34466666666666666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcC
Q 006396 546 EHNISLTKVAYTTIIKAHCAEG---DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~ 583 (647)
-.. |.++..+..+...++-.| +.+-|.++|.++++..
T Consensus 182 l~~-P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 182 LIQ-PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 521 223334455555544433 4445666666666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.8e-06 Score=86.60 Aligned_cols=135 Identities=9% Similarity=0.064 Sum_probs=96.9
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNI 523 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 523 (647)
..+...+..|.....+.|++++|..+++...+.. +.+......++..+.+.+.+++|...+++... ..| +......
T Consensus 83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~ 159 (694)
T PRK15179 83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILL 159 (694)
T ss_pred cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHH
Confidence 4456677777777777788888888888777742 33445666677777777888888888887777 344 4666677
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..++.+.|++++|..+|+++...+ +.+..++..++.++...|+.++|...|+++++..
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7777777888888888888887632 3345677777777888888888888888877654
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-06 Score=70.73 Aligned_cols=159 Identities=13% Similarity=0.037 Sum_probs=101.6
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 006396 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLL 181 (647)
Q Consensus 102 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (647)
......+...|+-+....+........ +.+.......+....+.|++..|...+.+.... -++|...|+.+..+|.+.
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~ 147 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQL 147 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHc
Confidence 555666666676666666666544332 445555555666667777777777777777665 356677777777777777
Q ss_pred CChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHH
Q 006396 182 SQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL 261 (647)
Q Consensus 182 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 261 (647)
|+++.|..-|.+..+.... ++...+.+.-.+.-.|+.+.|..++......+.. +..+-..+.......|++++|..+.
T Consensus 148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence 7777777777666655222 3455666666666777777777777766655322 5556666666677777777776665
Q ss_pred HHH
Q 006396 262 YEM 264 (647)
Q Consensus 262 ~~~ 264 (647)
..-
T Consensus 226 ~~e 228 (257)
T COG5010 226 VQE 228 (257)
T ss_pred ccc
Confidence 543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.72 E-value=2.7e-06 Score=76.39 Aligned_cols=187 Identities=12% Similarity=0.041 Sum_probs=130.3
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC-CC-HHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA---VTYTTFMNAYCEEGNIQRLLALLQEMETKAIG-PT-HVTY 451 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~-~~~~ 451 (647)
....+......+...|+++.|...++.+.... +.+. ..+..+..++...|++++|...++.+.+..-. |. ...+
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 45566777888899999999999999998753 2222 46677888999999999999999999876311 11 1245
Q ss_pred HHHHHHHHhc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 452 TVVIKGLCKQ--------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 452 ~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
..+..++... |++++|.+.++.+.+.. +.+...+..+..... ... .. ......
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~~~~----~~~------~~--------~~~~~~ 171 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-PNSEYAPDAKKRMDY----LRN------RL--------AGKELY 171 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-CCChhHHHHHHHHHH----HHH------HH--------HHHHHH
Confidence 5555566544 78899999999998753 223333322221111 000 00 011235
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNI--SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...|...|++++|...++++.+... +.....+..++.++...|++++|..+++.+....
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 66778899999999999999997521 1234688899999999999999999988887643
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-05 Score=81.84 Aligned_cols=162 Identities=12% Similarity=0.081 Sum_probs=131.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 409 LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 409 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
.+.++..+..|.....+.|.+++|..+++...+. .|+ ......+...+.+.+++++|+..+++..... +.+.....
T Consensus 82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~ 158 (694)
T PRK15179 82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREIL 158 (694)
T ss_pred ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHH
Confidence 3567888999999999999999999999999986 455 4567778889999999999999999999864 55667788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+..++.+.|++++|..+|+++...+ +-+..++..+..++...|+.++|...|+++.+. ..+....|+.++ +
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------~ 230 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------V 230 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------H
Confidence 88889999999999999999999832 334889999999999999999999999999985 244445554443 3
Q ss_pred CHHHHHHHHHHHHH
Q 006396 568 DVHKAMTFFCQMVE 581 (647)
Q Consensus 568 ~~~~A~~~~~~~~~ 581 (647)
+...-..++++..-
T Consensus 231 ~~~~~~~~~~~~~~ 244 (694)
T PRK15179 231 DLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHcCc
Confidence 44455555665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.68 E-value=6.6e-07 Score=72.25 Aligned_cols=94 Identities=11% Similarity=0.005 Sum_probs=41.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
..+...+...|++++|.+.++.+...+ +.+...+..+..++...|++++|...+++..+.+ +.+...+..++.++...
T Consensus 21 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~ 98 (135)
T TIGR02552 21 YALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLAL 98 (135)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHc
Confidence 334444444444444444444444421 1234444444444444444444444444444432 22333444444444444
Q ss_pred CCHHHHHHHHHHHHHc
Q 006396 567 GDVHKAMTFFCQMVEK 582 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~ 582 (647)
|++++|...++++++.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 99 GEPESALKALDLAIEI 114 (135)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 4444444444444443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-06 Score=83.59 Aligned_cols=224 Identities=8% Similarity=0.060 Sum_probs=160.5
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSA-VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVI 455 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (647)
+...+..|+..+...+++++|.++.+...+. .|+. ..|..+...+.+.++.+.+..+ .++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l 90 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI 90 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence 4567788888888999999999999877665 3443 3334444456666665444433 233
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
.......++.....+...+... .-+...+..+..+|.+.|+.++|..+|+++++.+ +-|+.+.|.++..|... +++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 3334444554444444455542 3455678889999999999999999999999954 34799999999999999 999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh-hhHHHHhhhhCCCCCCHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY-TKSFFCMMLSNGFPPDQEICEVM 614 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l 614 (647)
+|.+++.++... +...+++.++..+|++++... |+..++ ...........+...-...+..+
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~--~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN--SDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC--cccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 999999998763 566678888888888888754 332223 33333344444666667888888
Q ss_pred HHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 615 LIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 615 ~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
-..|...++|+++..+++.+++..++
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~ 255 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK 255 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc
Confidence 88999999999999999999987654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.60 E-value=3e-05 Score=79.98 Aligned_cols=218 Identities=11% Similarity=0.090 Sum_probs=110.9
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+...+..|+..+...+++++|.++++...+..+. ....|..+...+.+.++.+.+..+ . ++.
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~-~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~ 91 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKK-SISALYISGILSLSRRPLNDSNLL--N---------------LID 91 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCc-ceehHHHHHHHHHhhcchhhhhhh--h---------------hhh
Confidence 4556667777777777777777777766554221 333333344455555554444333 1 222
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 501 (647)
......++..+..+...|... .-+...+..+..+|-+.|+.+++..+++++++.. +-++.+.|.+...|... ++++
T Consensus 92 ~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K 167 (906)
T PRK14720 92 SFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK 167 (906)
T ss_pred hcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence 222233333333333333332 1233355566666666666666666666666654 45556666666666666 6666
Q ss_pred HHHHHHHHHhCCC---CCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 502 AFQLLNQMWLHNL---EPT--SATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 502 A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|.+++.+++..-+ .++ ...|..++ ....-+.+.-.++.+++... |..--..++..+...|-...+|++++.+
T Consensus 168 A~~m~~KAV~~~i~~kq~~~~~e~W~k~~--~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~i 245 (906)
T PRK14720 168 AITYLKKAIYRFIKKKQYVGIEEIWSKLV--HYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYI 245 (906)
T ss_pred HHHHHHHHHHHHHhhhcchHHHHHHHHHH--hcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHH
Confidence 6666666554200 000 01111110 00111222333333333322 2222233555566677777888889999
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
++.+++..
T Consensus 246 LK~iL~~~ 253 (906)
T PRK14720 246 LKKILEHD 253 (906)
T ss_pred HHHHHhcC
Confidence 98888876
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.5e-05 Score=72.54 Aligned_cols=115 Identities=14% Similarity=0.096 Sum_probs=71.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 536 (647)
+...|.+++|+..++.+++. .+.|+..+......+.+.++.++|.+.+++++. ..|+ ......+..+|.+.|++++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChHH
Confidence 34456666777766666654 244555555556666667777777777777666 3454 5555666666777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
|+.++++.... .+.|+..|..+.++|...|+..+|....
T Consensus 393 ai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~ 431 (484)
T COG4783 393 AIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLAR 431 (484)
T ss_pred HHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHH
Confidence 77777666654 2555666777777776666665555433
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.58 E-value=4e-05 Score=65.19 Aligned_cols=216 Identities=12% Similarity=0.034 Sum_probs=96.9
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
+-+.-.|+|..++..-....... .+......+.++|...|.+.....-. .... .|.......+......-++.+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---cccc-CChHHHHHHHHHHhhCcchhH
Confidence 34455666666666555443321 23444455666666666665443322 1111 222222332322222222322
Q ss_pred HHH-HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 151 EAL-EFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 151 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
.-. ++.+.+.......+......-...|...+++++|++...... +......=+..+.+..+++.|.+.++.|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 233333332222222222222334555566666655554411 2222222233444555555555555555
Q ss_pred HhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 230 LSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
.+.+ +..+.+-|..+|.+ .+.+.+|.-+|++|.+. ..|+..+.+....++...|++++|..+++....+
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 5431 33344444444433 23455555555555542 3455555555555555555666666555555544
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.3e-06 Score=67.44 Aligned_cols=110 Identities=17% Similarity=0.046 Sum_probs=68.7
Q ss_pred HHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 006396 50 LYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL 129 (647)
Q Consensus 50 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 129 (647)
.+++++...+ .+......++..+...|++++|...|+.+...++ .+...+..+...+.+.|++++|...+++..+.+
T Consensus 5 ~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~- 81 (135)
T TIGR02552 5 TLKDLLGLDS-EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALD- 81 (135)
T ss_pred hHHHHHcCCh-hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence 3444444332 3445555666666677777777777777665442 255566666667777777777777777666654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 130 HPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
+.+...+..+...+...|++++|...|+...+.
T Consensus 82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445556666666666777777777777766664
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.47 E-value=0.00033 Score=59.30 Aligned_cols=203 Identities=17% Similarity=0.146 Sum_probs=153.6
Q ss_pred hcCCHHHHHHHHHHHHHC---C-CCCCccc-hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 355 KLGNIGEAVQLYRQLIEK---R-ISPSIVT-FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~---~-~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
...+.++..+++..+... | ..++..+ +..++-+....++.+.|...++.+...- +-+...-..-...+-..|.+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~ 102 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY 102 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence 356789999999888753 3 3444443 3445566778899999999999988763 44444443334445668999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
++|+++++.+.+.+ +.|..++-.-+...-..|+.-+|++-+....+. +..|...|..+...|...|++++|.-+++++
T Consensus 103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 99999999999876 556677777677777788888999988888876 6889999999999999999999999999999
Q ss_pred HhCCCCC-CHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 510 WLHNLEP-TSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 510 ~~~~~~p-~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
+- +.| ++..|..+.+.+...| +.+.|.++|.+.++.+ +.+...+..+..++
T Consensus 181 ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~-~~~~ral~GI~lc~ 235 (289)
T KOG3060|consen 181 LL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN-PKNLRALFGIYLCG 235 (289)
T ss_pred HH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC-hHhHHHHHHHHHHH
Confidence 98 455 6888888888877665 6777999999999843 12444555444333
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.47 E-value=3.1e-05 Score=71.98 Aligned_cols=124 Identities=13% Similarity=0.052 Sum_probs=101.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~ 566 (647)
.....+...|.+++|+..++.++.. .+-|+..+....+.+...++.++|.+.++++... .|+ ...+..+..++.+.
T Consensus 311 G~A~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~ 387 (484)
T COG4783 311 GRALQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKG 387 (484)
T ss_pred HHHHHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhc
Confidence 3444556779999999999998874 3446888888899999999999999999999984 565 56788999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
|++.+|+.+++...... |.++..|..|+.+|...|+..+|.....+..
T Consensus 388 g~~~eai~~L~~~~~~~---------------------p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 388 GKPQEAIRILNRYLFND---------------------PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred CChHHHHHHHHHHhhcC---------------------CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999876 7778888888888877777666665555544
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.45 E-value=3e-07 Score=52.04 Aligned_cols=32 Identities=50% Similarity=0.992 Sum_probs=21.9
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
|+.||..+|+.+|.++++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 56667777777777777777777777666665
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.1e-05 Score=65.70 Aligned_cols=125 Identities=14% Similarity=0.114 Sum_probs=80.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTII 560 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~ 560 (647)
|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+.+....|+ ......++
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 33344443 3677777777777777632 112 33344456777778888888888888887542222 12455677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
..+...|++++|+..++..... +..+..+...+.+|.+.|++++|+..|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~----------------------~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDE----------------------AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCc----------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 7788888888888887653221 334556777888888888888888887764
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00012 Score=62.30 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=96.9
Q ss_pred HHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh
Q 006396 106 SRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQIS 185 (647)
Q Consensus 106 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 185 (647)
+-+.-.|++..++..-+..... +.+...-..+-++|...|++.... .++.... .|.......+.......+..+
T Consensus 16 Rn~fY~Gnyq~~ine~~~~~~~--~~~~e~d~y~~raylAlg~~~~~~---~eI~~~~-~~~lqAvr~~a~~~~~e~~~~ 89 (299)
T KOG3081|consen 16 RNYFYLGNYQQCINEAEKFSSS--KTDVELDVYMYRAYLALGQYQIVI---SEIKEGK-ATPLQAVRLLAEYLELESNKK 89 (299)
T ss_pred HHHHHhhHHHHHHHHHHhhccc--cchhHHHHHHHHHHHHcccccccc---ccccccc-CChHHHHHHHHHHhhCcchhH
Confidence 3344456666665554444332 123333334445555566544322 2222211 222222222222222233333
Q ss_pred hHH-HHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 186 GAW-KVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 186 ~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
..+ ++.+.+.......+......-...|+..|++++|++...... +......=...+.+..+++.|.+.+++|
T Consensus 90 ~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~m 163 (299)
T KOG3081|consen 90 SILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKM 163 (299)
T ss_pred HHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 322 233333333222222222333445666777777776665421 2223333334555666677777777777
Q ss_pred HHCCCCCCHhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHc
Q 006396 265 EAVGLKPDLVTYSILIRGLCK----QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 337 (647)
.+.. +..+.+.|..++.+ .+.+..|.-+|++|.++ .+|++.+.+....++...+++++|..+++.....
T Consensus 164 q~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k 236 (299)
T KOG3081|consen 164 QQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK 236 (299)
T ss_pred Hccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 6531 34444444444432 34466666666666553 2444444444444444444444444444444433
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=3.5e-07 Score=51.79 Aligned_cols=31 Identities=39% Similarity=0.755 Sum_probs=13.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
+.||..+|+++|.+|++.|++++|.++|++|
T Consensus 3 ~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 3 CEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 3444444444444444444444444444433
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.4e-05 Score=75.22 Aligned_cols=125 Identities=14% Similarity=0.092 Sum_probs=91.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
....++..+...++++.|..+++++.+. .|+. ...+++.+...++-.+|.+++.+.++. .+-+...+..-+..+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~--~pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~-~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER--DPEV--AVLLARVYLLMNEEVEAIRLLNEALKE-NPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc--CCcH--HHHHHHHHHhcCcHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHH
Confidence 3445566666777888888888887763 3443 334667777777778888888888764 2445556666677788
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..++++.|+.+.++++... |.+...|..|+.+|.+.|++++|+-.++.+.
T Consensus 246 ~k~~~~lAL~iAk~av~ls---------------------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELS---------------------PSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 8888888888888888876 6667888888888888888888888777665
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=63.69 Aligned_cols=91 Identities=11% Similarity=-0.018 Sum_probs=49.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.+...+...|++++|.++|+-+.. +.| +..-|..|+-++-..|++++|+..|.++...+ +.++..+..++.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 334444455666666666655555 233 34555555555555566666666666555533 23444555555556666
Q ss_pred CCHHHHHHHHHHHHH
Q 006396 567 GDVHKAMTFFCQMVE 581 (647)
Q Consensus 567 g~~~~A~~~~~~~~~ 581 (647)
|+.+.|++.|+.++.
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666555554
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.6e-05 Score=62.58 Aligned_cols=126 Identities=14% Similarity=0.116 Sum_probs=85.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD---QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNIL 524 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l 524 (647)
.|..++..+ ..++...+...++.+.+.. +.+ ......+...+...|++++|...|+.+......|+ ......|
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 344444444 3677788877788877753 333 23344455677788888888888888887542222 2344556
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..++...|++++|+..++..... ...+..+...+.++...|++++|+..|+++
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 78888888888888888664332 234456677888888888888888888865
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.27 E-value=2.1e-06 Score=62.07 Aligned_cols=82 Identities=12% Similarity=0.176 Sum_probs=54.7
Q ss_pred cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH
Q 006396 531 NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE 609 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (647)
.|+++.|+.+++++.+.... ++...+..++.++.+.|++++|+.++++ .+.+ +.+..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~---------------------~~~~~ 59 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD---------------------PSNPD 59 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH---------------------HCHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC---------------------CCCHH
Confidence 46778888888888774321 1344566677888888888888888877 4333 34455
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
....++.++.+.|++++|++.++++
T Consensus 60 ~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 60 IHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 6666678888888888888877653
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.4e-05 Score=60.13 Aligned_cols=96 Identities=16% Similarity=0.088 Sum_probs=61.2
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|.+.++++....
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~----------------- 64 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD----------------- 64 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-----------------
Confidence 3445556666677777777777666542 2333456666666666777777777777766654
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+.+...+..++..+...|++++|...++++.+.+
T Consensus 65 ----~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 65 ----PDNAKAYYNLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred ----CcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 4455666677777777777777777777666544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.21 E-value=4.2e-05 Score=60.06 Aligned_cols=100 Identities=17% Similarity=0.048 Sum_probs=51.6
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
+..++..+...|++++|.+.+.++.+.. +.+ ...+..++.++...|++++|...++.+.... |
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--p----------- 70 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKY-PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY--P----------- 70 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC--C-----------
Confidence 3444555555566666666665555431 111 2344455555666666666666666655433 0
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+....++..++.++.+.|++++|.+.++++++..|
T Consensus 71 -----~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 71 -----KSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred -----CCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 0011234555555666666666666666666655543
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.20 E-value=7.4e-06 Score=56.60 Aligned_cols=67 Identities=19% Similarity=0.255 Sum_probs=61.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCC-CHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGG-DLGSVFEL 630 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~ 630 (647)
++.+|..++..+...|++++|+..|+++++.+ |.+..+|..++.++.+.| ++++|++.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~---------------------p~~~~~~~~~g~~~~~~~~~~~~A~~~ 60 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD---------------------PNNAEAYYNLGLAYMKLGKDYEEAIED 60 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS---------------------TTHHHHHHHHHHHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCCHHHHHHHHHHHHHhCccHHHHHHH
Confidence 45688999999999999999999999999988 778999999999999999 79999999
Q ss_pred HHHHHhCCC
Q 006396 631 AAVMIKSGL 639 (647)
Q Consensus 631 ~~~~~~~~~ 639 (647)
++++++.+|
T Consensus 61 ~~~al~l~P 69 (69)
T PF13414_consen 61 FEKALKLDP 69 (69)
T ss_dssp HHHHHHHST
T ss_pred HHHHHHcCc
Confidence 999998664
|
... |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00014 Score=66.09 Aligned_cols=257 Identities=12% Similarity=0.043 Sum_probs=131.1
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
+.+...+..|+..+...+... +.+..-|..-+..+...|+++++.--.+.-++.... .+......-+++...++..+|
T Consensus 59 ~yk~k~Y~nal~~yt~Ai~~~-pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 59 FYKQKTYGNALKNYTFAIDMC-PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred HHHHhhHHHHHHHHHHHHHhC-ccchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHHH
Confidence 344455555555555555543 223444444455555566666665555444432111 122233333444444444444
Q ss_pred HHHHH---------------HHHHCCC-CCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH--H
Q 006396 398 RRLLD---------------TIKLHGL-EPSAVTYTTF-MNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG--L 458 (647)
Q Consensus 398 ~~~~~---------------~~~~~~~-~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--~ 458 (647)
...++ .+..... +|.-..+..+ ..++.-.+++++|...--.+.+.. ..+ .+...+++ +
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~ 213 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCL 213 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhccccc
Confidence 43333 1111111 1222333322 234455677777776666665542 112 22223332 3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHH-------------HHHHHHHHhcCCHHHHHHHHHHHHhC---CCCCCHHHHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITY-------------NTIIRSFCKCKDLRKAFQLLNQMWLH---NLEPTSATYN 522 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~-------------~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~ 522 (647)
.-.++.+.+...|++.+.. .|+.... ..-.+-..+.|++..|.+.|.+.+.. +..|+...|.
T Consensus 214 yy~~~~~ka~~hf~qal~l--dpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~ 291 (486)
T KOG0550|consen 214 YYNDNADKAINHFQQALRL--DPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYG 291 (486)
T ss_pred ccccchHHHHHHHhhhhcc--ChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHH
Confidence 3456777777777777654 3332211 11122234567777777777777762 2334455566
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....+..+.|+.++|+.-.+++.+. .+. ...+..-+.++...++|++|.+.++++.+..
T Consensus 292 nra~v~~rLgrl~eaisdc~~Al~i--D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 292 NRALVNIRLGRLREAISDCNEALKI--DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HhHhhhcccCCchhhhhhhhhhhhc--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6666666777777777777777652 222 2244445566666777777777777776654
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.4e-05 Score=72.39 Aligned_cols=93 Identities=14% Similarity=-0.001 Sum_probs=80.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.-...+...|++++|+..|+++++. .| +...|..+..+|...|++++|+..++++++.+ +.+...|..++.+|...
T Consensus 7 ~~a~~a~~~~~~~~Ai~~~~~Al~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~l 83 (356)
T PLN03088 7 DKAKEAFVDDDFALAVDLYTQAIDL--DPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKL 83 (356)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHh
Confidence 3455667789999999999999984 44 58888899999999999999999999999853 44666889999999999
Q ss_pred CCHHHHHHHHHHHHHcC
Q 006396 567 GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~ 583 (647)
|++++|+..|++++..+
T Consensus 84 g~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 84 EEYQTAKAALEKGASLA 100 (356)
T ss_pred CCHHHHHHHHHHHHHhC
Confidence 99999999999999987
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=8.3e-05 Score=70.07 Aligned_cols=128 Identities=19% Similarity=0.149 Sum_probs=89.0
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
......++..+...++++.|+.+|+++.... |+ ....+++.+...++-.+|.+++.+.++.. +.+......-...
T Consensus 169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF 243 (395)
T ss_pred hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3344455666667778888888888877653 33 34446677777777777888877777653 4455566666667
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
+...++++.|+++.+++.+. .|-+-.+|..|..+|...|+++.|+..++.+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm 296 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCPM 296 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence 77788888888888888775 344556788888888888888888877777654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0011 Score=53.23 Aligned_cols=134 Identities=13% Similarity=0.084 Sum_probs=84.4
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-CCHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-PTSATYNI 523 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~ 523 (647)
.|+...-..+..++.+.|+..+|...|++...--+..|...+..+.++....+++..|...++.+.+.+.. -++.....
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll 165 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL 165 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence 56666666667777777777777777777766445566666777777777777777777777777663210 02344455
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+.+.|...|++.+|+.-|+.+... -|+...-......+.+.|+..+|..-+..+.
T Consensus 166 ~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 166 FARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 667777777777777777777763 4555544444555666666666554444443
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=5.5e-05 Score=65.83 Aligned_cols=94 Identities=18% Similarity=0.193 Sum_probs=55.6
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 536 (647)
+.+.+++.+|+..|.++++.. +-|.+.|..-..+|.+.|.++.|.+-.+..+. +.|. ...|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcHHH
Confidence 445566666666666666542 34455555556666666666666666666655 4443 5566666666666666666
Q ss_pred HHHHHHHHHHcCCCCCHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~ 556 (647)
|++.|++.++ +.|+..+|
T Consensus 168 A~~aykKaLe--ldP~Ne~~ 185 (304)
T KOG0553|consen 168 AIEAYKKALE--LDPDNESY 185 (304)
T ss_pred HHHHHHhhhc--cCCCcHHH
Confidence 6666666665 44554443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0016 Score=52.32 Aligned_cols=101 Identities=14% Similarity=0.065 Sum_probs=53.1
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAY 556 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~ 556 (647)
.|+...-..|..+....|+..+|...|++...--...|..+...+.++....+++..|...++++.+.+ | ++.+.
T Consensus 86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~--pa~r~pd~~ 163 (251)
T COG4700 86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYN--PAFRSPDGH 163 (251)
T ss_pred chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcC--CccCCCCch
Confidence 444444445555555556666666555555543233355555555555555555555555555555432 2 12233
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..+.+++...|++..|...|+.+...
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 44445555555555555555555553
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=2.7e-05 Score=67.72 Aligned_cols=90 Identities=20% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcC
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEG 567 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g 567 (647)
..-..+.+++.+|+..|.++++ +.| |...|..-..+|.+.|.++.|++-.+..+. +.|.. .+|..|..+|...|
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccC
Confidence 4445677888888888888888 555 577777788888888888888888888887 44543 48888888888888
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
++++|++.|+++++..
T Consensus 164 k~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELD 179 (304)
T ss_pred cHHHHHHHHHhhhccC
Confidence 8888888888888876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=5.5e-05 Score=59.85 Aligned_cols=93 Identities=8% Similarity=-0.192 Sum_probs=42.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 67 SIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIA 146 (647)
Q Consensus 67 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 146 (647)
..++..+...|++++|..+|+......+. +..-|..+..++-..|++++|+..|..+.... +.++..+-.+..++...
T Consensus 39 Y~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 39 YRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHc
Confidence 33344444445555555555444433221 33344444444444455555555554444443 23344444444444445
Q ss_pred CCHHHHHHHHHHHhh
Q 006396 147 GSMEEALEFTNDMGR 161 (647)
Q Consensus 147 ~~~~~a~~~~~~~~~ 161 (647)
|+.+.|.+.|+....
T Consensus 117 G~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 117 DNVCYAIKALKAVVR 131 (157)
T ss_pred CCHHHHHHHHHHHHH
Confidence 555555544444443
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.8e-05 Score=53.86 Aligned_cols=61 Identities=16% Similarity=0.233 Sum_probs=54.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.++..+...|++++|+..|+++++.. |.+..++..++.++.+.|++++|...++++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~---------------------P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQD---------------------PDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCS---------------------TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35678899999999999999999987 778999999999999999999999999999986
Q ss_pred CC
Q 006396 638 GL 639 (647)
Q Consensus 638 ~~ 639 (647)
.|
T Consensus 61 ~P 62 (65)
T PF13432_consen 61 DP 62 (65)
T ss_dssp ST
T ss_pred Cc
Confidence 54
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00016 Score=60.87 Aligned_cols=99 Identities=13% Similarity=0.128 Sum_probs=51.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
..+..++..+...|++++|...++++.+.+..+. ...+..++.++.+.|++++|+..++++++..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------------- 102 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN------------- 102 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-------------
Confidence 3444555555555555555555555554221111 2345555555556666666666666555543
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCC--------------HHHHHHHHHHHHhCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGD--------------LGSVFELAAVMIKSG 638 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------~~~A~~~~~~~~~~~ 638 (647)
|.+...+..++.++...|+ +++|.++++++.+.+
T Consensus 103 --------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~ 150 (172)
T PRK02603 103 --------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLA 150 (172)
T ss_pred --------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhC
Confidence 3344555555555555544 455666666665544
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0002 Score=56.16 Aligned_cols=99 Identities=14% Similarity=0.093 Sum_probs=63.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC-C-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCC--CCHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE-P-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS--LTKVAYTTII 560 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~ 560 (647)
++..++..+.+.|++++|...+..+...... + ....+..++.++.+.|++++|...++.+...... ....++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3445566666777777777777777653110 1 1345556777777777777777777777763211 1134566677
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|...++++++..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77777777777777777777765
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00032 Score=61.69 Aligned_cols=102 Identities=13% Similarity=0.064 Sum_probs=56.5
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
+-|...|..|..+|...|+.+.|...|.+..+. ..+++..+..+..++..+. ...++..++++++..+ +.|..+.
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL-~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral 230 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRL-AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL 230 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence 455566666666666666666666666666552 1224555555555544332 3445566666666532 3344455
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..+...+...|++.+|...|+.|++..
T Consensus 231 ~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 231 SLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 555566666666666666666666554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.017 Score=56.74 Aligned_cols=29 Identities=7% Similarity=-0.130 Sum_probs=18.0
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHh
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQET 89 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 89 (647)
|.+..|..++....+.-.++-|...|-+.
T Consensus 690 PHprLWrllAe~Al~Kl~l~tAE~AFVrc 718 (1189)
T KOG2041|consen 690 PHPRLWRLLAEYALFKLALDTAEHAFVRC 718 (1189)
T ss_pred CchHHHHHHHHHHHHHHhhhhHhhhhhhh
Confidence 55666777766666666666666655544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00023 Score=67.55 Aligned_cols=99 Identities=14% Similarity=0.050 Sum_probs=84.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 532 (647)
-...+...|++++|+..++++++.. +.+...|..+..+|...|++++|+..+++++. +.| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~--l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIE--LDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 3455678899999999999999875 56778888999999999999999999999998 445 5888999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYT 557 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~ 557 (647)
++++|...|+++++. .|+.....
T Consensus 85 ~~~eA~~~~~~al~l--~P~~~~~~ 107 (356)
T PLN03088 85 EYQTAKAALEKGASL--APGDSRFT 107 (356)
T ss_pred CHHHHHHHHHHHHHh--CCCCHHHH
Confidence 999999999999984 45544333
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.00013 Score=54.61 Aligned_cols=94 Identities=18% Similarity=0.103 Sum_probs=61.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
+..++..+...|++++|...++++....+. +...+..++..+...|+++.|...++...+.. +.+...+..+...+..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 80 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK 80 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence 455666677777777777777777654322 33556666777777777777777777776654 3344566666666677
Q ss_pred cCCHHHHHHHHHHHhh
Q 006396 146 AGSMEEALEFTNDMGR 161 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~ 161 (647)
.|+++.|...+....+
T Consensus 81 ~~~~~~a~~~~~~~~~ 96 (100)
T cd00189 81 LGKYEEALEAYEKALE 96 (100)
T ss_pred HHhHHHHHHHHHHHHc
Confidence 7777777777766654
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.6e-05 Score=57.37 Aligned_cols=82 Identities=13% Similarity=0.090 Sum_probs=52.8
Q ss_pred cCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNL-EPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|+++.|+.+++++.+... .|+...+..++.+|.+.|++++|..++++ .+.+ +.+......++.++...|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 4677888888888877321 12445555577888888888888888877 3221 1223455556788888888888888
Q ss_pred HHHHH
Q 006396 575 FFCQM 579 (647)
Q Consensus 575 ~~~~~ 579 (647)
.++++
T Consensus 80 ~l~~~ 84 (84)
T PF12895_consen 80 ALEKA 84 (84)
T ss_dssp HHHHH
T ss_pred HHhcC
Confidence 87753
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.023 Score=55.84 Aligned_cols=206 Identities=17% Similarity=0.040 Sum_probs=108.0
Q ss_pred CCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCc--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 200 DPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ-GFKL--------NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 200 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
.|.+..|..+.......-+++.|...|-+.... |++. +...-. ...-.--|++++|++++-++...
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~--aei~~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQR--AEISAFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHh--HhHhhhhcchhHhhhhhhccchh---
Confidence 455666666666655555566665555443321 1110 000000 11122347888888888777654
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCC-CCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKR-ISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIM 349 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 349 (647)
...+..+.+.|++-...++++.--... -..-...+..+...+.....|++|.+.|..-.. ....
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~---------~e~~ 828 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD---------TENQ 828 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc---------hHhH
Confidence 123455566677766665554321100 001123455566666666667777666654321 1234
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
+.++.+..++++-+.+-+.+ +-+....-.+..++.+.|.-++|.+.+-+.. .| ...+..|...++|
T Consensus 829 ~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW 894 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQW 894 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHH
Confidence 55555555555555444443 2355566677777777777777776654332 22 2234556667777
Q ss_pred HHHHHHHHHH
Q 006396 430 QRLLALLQEM 439 (647)
Q Consensus 430 ~~a~~~~~~~ 439 (647)
.+|.++-+..
T Consensus 895 ~~avelaq~~ 904 (1189)
T KOG2041|consen 895 GEAVELAQRF 904 (1189)
T ss_pred HHHHHHHHhc
Confidence 7777666543
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00072 Score=67.15 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=69.7
Q ss_pred CCCHHHHHHHHHHHHh--c---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHh
Q 006396 445 GPTHVTYTVVIKGLCK--Q---WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--------KDLRKAFQLLNQMWL 511 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~A~~~~~~~~~ 511 (647)
+.+...|...+++... . ++...|..+|+++++.. +.....+..+..++... +++..+.+...+...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4556666666666432 2 22556667777766642 22233444433333221 112333333333333
Q ss_pred CC-CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 512 HN-LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 512 ~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.. ...++..+..+.-.+...|++++|...++++++. .|+...|..++.++...|+.++|.+.++++...+
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLR 483 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 11 1223455555555555556666666666666663 3455566666666666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00061 Score=59.95 Aligned_cols=100 Identities=12% Similarity=0.027 Sum_probs=64.7
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC---ChhhHHHHHHHHHhCCCCCCHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG---FAEVAKGLFCLMLKYGLHPDAFSYN 137 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~ 137 (647)
.|...|..|+.+|..+|+++.|...|.++.+..+ +++..+..+..++..+. ...++..+|+++++.. +.|..+..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g-~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral~ 231 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAG-DNPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRALS 231 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHHH
Confidence 6666777777777777777777777777766532 35556666666554432 3446667777777664 44555666
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 138 ILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 138 ~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.|...+...|++.+|...|+.|.+.
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhc
Confidence 6666667777777777777777665
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0046 Score=56.65 Aligned_cols=164 Identities=16% Similarity=0.091 Sum_probs=99.3
Q ss_pred HHHHHHHH-HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH--HHHhcCChhhHHHHHHHHHhcCCCCCcch----
Q 006396 133 AFSYNILI-HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK--GFHLLSQISGAWKVIQKLLIKGSDPDIVT---- 205 (647)
Q Consensus 133 ~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~---- 205 (647)
...|..+- ..+.-.+++++|.+.--..++.. ..+ .+..+++ ++-..++.+.+...|++.+..+ |+...
T Consensus 168 c~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n--~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~ 242 (486)
T KOG0550|consen 168 CFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATN--AEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSA 242 (486)
T ss_pred hhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cch--hHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhH
Confidence 34444333 23345666777766665555432 112 2222222 2334566666666666665542 22211
Q ss_pred ---------HHHHHHHHHhcCChHHHHHHHHHHHhCC---CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006396 206 ---------YTVLICGYCQIGNVEEGLKLREVMLSQG---FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 206 ---------~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
+..-..-..+.|++..|.+.|.+.+..+ ..++...|.....+..+.|+..+|+.--+........ -+
T Consensus 243 ~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yi 321 (486)
T KOG0550|consen 243 SMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YI 321 (486)
T ss_pred hhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HH
Confidence 1112234567899999999999988764 4456667888888888999999999998888764200 11
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 274 VTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
..+..-..++...++|++|++-|++..+.
T Consensus 322 kall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 322 KALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 23333345556678899999999888775
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00049 Score=52.67 Aligned_cols=108 Identities=19% Similarity=0.098 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCC----HHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPD----AFSYNIL 139 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l 139 (647)
...++.++-..|+.++|+.+|+++...|.... ...+..+...+...|++++|..+++..... .|+ ......+
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~--~p~~~~~~~l~~f~ 81 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEE--FPDDELNAALRVFL 81 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCccccHHHHHHH
Confidence 44556667777777777777777777665433 235667777777777888887777777765 233 1222223
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
..++...|+.++|.+.+-.... ++...|..-|..|.
T Consensus 82 Al~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 82 ALALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 3455667777777776655432 23334554444443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.016 Score=52.76 Aligned_cols=256 Identities=16% Similarity=0.165 Sum_probs=152.0
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccc--hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSIVT--FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
-.|+++.|.+-|+.|... |.... +..+.-...+.|+.+.|..+-+...... +.-...+...+...+..|+|+.|
T Consensus 132 ~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~A 207 (531)
T COG3898 132 LEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGA 207 (531)
T ss_pred hcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHH
Confidence 356666666666666542 11111 1122222234566666666655554431 22234455566666667777777
Q ss_pred HHHHHHHHhCC-CCCCHHH--HHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 006396 433 LALLQEMETKA-IGPTHVT--YTVVIKGL---CKQWKLQEAVQLLEDMYVIGVTPDQI-TYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 433 ~~~~~~~~~~~-~~~~~~~--~~~l~~~~---~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+++++.-.... +.++..- -..|+.+- .-..+...|...-.+..+ +.||.. .-..-..++.+.|++.++-.+
T Consensus 208 lkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~i 285 (531)
T COG3898 208 LKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKI 285 (531)
T ss_pred HHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhH
Confidence 77666544322 2222221 11111111 112345556655555554 345533 223345678889999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE-HNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+.+ ..|.+.++..+ .+.+.|+ .+..-++++.. ..++|| ......+..+....|++..|..--+.+...
T Consensus 286 lE~aWK--~ePHP~ia~lY--~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~- 358 (531)
T COG3898 286 LETAWK--AEPHPDIALLY--VRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE- 358 (531)
T ss_pred HHHHHh--cCCChHHHHHH--HHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh-
Confidence 999998 46666665433 3445554 34444444432 114554 457788889999999999999888877764
Q ss_pred CcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCCCCC
Q 006396 584 FEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
.|...+|..|++.-... ||-.+++.++.+..+.--.|+.+
T Consensus 359 ---------------------~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdPaW~ 399 (531)
T COG3898 359 ---------------------APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDPAWT 399 (531)
T ss_pred ---------------------CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCCccc
Confidence 48888999999887776 99999999999988876666543
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00045 Score=52.89 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=48.8
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAH 563 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~ 563 (647)
+..++-..|+.++|..+|++....|+... ...+..+...+...|++++|..++++..... +. +......+..++
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence 34455556666666666666666554432 3344455566666666666666666665531 11 122233334455
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 006396 564 CAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~ 581 (647)
...|+.++|+..+-..+.
T Consensus 86 ~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 86 YNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 556666666665555443
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00046 Score=58.08 Aligned_cols=91 Identities=13% Similarity=0.025 Sum_probs=67.8
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
....+..++..+...|++++|...|+++....+.+. ...+..++..+.+.|++++|...++++.+.. +.+...+..+
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 112 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI 112 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence 345677788888889999999999998876543332 3578888888899999999999999888764 3456666677
Q ss_pred HHHHHhcCCHHHHH
Q 006396 140 IHGLCIAGSMEEAL 153 (647)
Q Consensus 140 ~~~~~~~~~~~~a~ 153 (647)
...+...|+...+.
T Consensus 113 g~~~~~~g~~~~a~ 126 (172)
T PRK02603 113 AVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHcCChHhHh
Confidence 77777777654444
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.022 Score=53.06 Aligned_cols=204 Identities=16% Similarity=0.114 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHH-------HHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNS-------LIYGFCK----NGKVADARRLLDTIKLHGLEP 411 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-------l~~~~~~----~~~~~~a~~~~~~~~~~~~~~ 411 (647)
..++..++....+.++...|.+.+.-+.-.. |+...-.. +-...+. .-+...-..+|+.+...+ .
T Consensus 298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ld--p~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--i 373 (549)
T PF07079_consen 298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILD--PRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--I 373 (549)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcC--CcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--c
Confidence 3466777778888888888888887766542 33222111 1122221 112233344455554432 2
Q ss_pred CHH-HHHHH---HHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHH----HHHh---cCCHHHHHHHHHHHHHcCC
Q 006396 412 SAV-TYTTF---MNAYCEEGN-IQRLLALLQEMETKAIGPTHVTYTVVIK----GLCK---QWKLQEAVQLLEDMYVIGV 479 (647)
Q Consensus 412 ~~~-~~~~l---~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~---~g~~~~a~~~~~~~~~~~~ 479 (647)
|.. ...-+ ..-+.+.|. -++|+.+++.+.+-. +-|...-+.+.. .|.. .....+-+.+-+-+.+.|+
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl 452 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGL 452 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCC
Confidence 221 11112 222444555 788888888887642 223333333222 2211 1223333333333445676
Q ss_pred CCCH----HHHHHHHHH--HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH
Q 006396 480 TPDQ----ITYNTIIRS--FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 480 ~~~~----~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
+|-. ..-|.+..+ ....|++.++.-+-.-+.+ +.|++.+|..++-++....++++|..++.. +||+.
T Consensus 453 ~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~ 525 (549)
T PF07079_consen 453 TPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNE 525 (549)
T ss_pred CcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCch
Confidence 6532 233444433 3467888888776665555 788999999999999999999999998877 47777
Q ss_pred HHHHH
Q 006396 554 VAYTT 558 (647)
Q Consensus 554 ~~~~~ 558 (647)
.+++.
T Consensus 526 ~~~ds 530 (549)
T PF07079_consen 526 RMRDS 530 (549)
T ss_pred hhHHH
Confidence 77654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00036 Score=58.51 Aligned_cols=94 Identities=15% Similarity=-0.034 Sum_probs=63.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
...|..++..+...|++++|...|+++....+.+ ...++..+...+...|++++|...++++.+.. +.....+..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHH
Confidence 4566777777888888888888888886543332 23467778888888888888888888887653 33445555666
Q ss_pred HHHH-------hcCCHHHHHHHHH
Q 006396 141 HGLC-------IAGSMEEALEFTN 157 (647)
Q Consensus 141 ~~~~-------~~~~~~~a~~~~~ 157 (647)
..+. ..|+++.|...++
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHH
Confidence 5665 5556554444433
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=64.56 Aligned_cols=128 Identities=13% Similarity=-0.009 Sum_probs=58.0
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI-AGSMEEALEFTNDMGRHGVEPDAITYSILAKGF 178 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 178 (647)
+|..++....+.+..+.|+.+|.++.+.+ ..+..+|......-.. .++.+.|.++|+...+. .+.+...|...+..+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34455555555555555555555555332 2223333333333222 33444455555555544 344455555555555
Q ss_pred HhcCChhhHHHHHHHHHhcCCCCCc----chHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 179 HLLSQISGAWKVIQKLLIKGSDPDI----VTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 179 ~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
...++.+.|..+|++.+.. .+.. ..|...+..-.+.|+++.+.++.+.+.+
T Consensus 81 ~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 81 IKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5555555555555555443 1111 2445555555555555555555555544
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0003 Score=64.23 Aligned_cols=132 Identities=12% Similarity=0.063 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK-CKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
.+|..+++...+.+..+.|..+|.++.+.+ ..+..+|......-.. .++.+.|.++|+..++. +..+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 456677777777777888888888887542 3445555555555333 46666688888887774 34567777777788
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...|+.+.|..+|++.... ++++. ..|..++..-.+.|+.+.+..+.+++.+.-
T Consensus 80 l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred HHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 88888888888888888764 33333 377777777777788888888888777653
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00044 Score=58.03 Aligned_cols=114 Identities=17% Similarity=0.110 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 499 LRKAFQLLNQMWL-HNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 499 ~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+..+...+..+.+ .+..-....+..++..+...|++++|...++++......+ ...++..++.++...|++++|+..
T Consensus 15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 3344444444432 2212235667777888888899999999999988642222 234788888999999999999999
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHH-------cCCCHHHHHHHHHH
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFH-------QGGDLGSVFELAAV 633 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~ 633 (647)
+++++... |.....+..++.++. ..|++++|...+++
T Consensus 95 ~~~Al~~~---------------------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 95 YFQALERN---------------------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHhC---------------------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 99998765 445566666666666 78887755544443
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.026 Score=51.54 Aligned_cols=187 Identities=15% Similarity=0.120 Sum_probs=88.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH--HHHHHhcCChhHHHHHHHHhhcCCCCcCHHh--HHHHHHHHHhcCChh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIV--IDGLCQQSRLQDAILFLQETAGKEFGPSVVS--LNAIMSRYCKLGFAE 115 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 115 (647)
..|+-..|++.-.+.... ...|.+....+ .+...-.|++++|.+-|+.|.. .|.... +..+.-...+.|..+
T Consensus 96 gAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~Gare 171 (531)
T COG3898 96 GAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGARE 171 (531)
T ss_pred ccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHH
Confidence 566666666665544310 11233322222 2334456677777777777764 122221 222222233556666
Q ss_pred hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHH--HHHHHHH---hcCChhhHHH
Q 006396 116 VAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYS--ILAKGFH---LLSQISGAWK 189 (647)
Q Consensus 116 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~--~l~~~~~---~~~~~~~a~~ 189 (647)
.|.++-+.....- +.-...+...+...+..|+++.|+++.+.-++.. +.+++.--. .|+.+-. -..+...|..
T Consensus 172 aAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~ 250 (531)
T COG3898 172 AARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARD 250 (531)
T ss_pred HHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence 6666666665542 2234456666666667777777777666554431 223322211 1221111 1223334444
Q ss_pred HHHHHHhcCCCCCcch-HHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 190 VIQKLLIKGSDPDIVT-YTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 190 ~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
.-.+..+ ..||... -..-..++.+.|+..++-.+++.+-+..
T Consensus 251 ~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e 293 (531)
T COG3898 251 DALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE 293 (531)
T ss_pred HHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence 3333332 2344322 1222345566666666666666666653
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.03 Score=52.13 Aligned_cols=131 Identities=18% Similarity=0.208 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILI 525 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~ 525 (647)
...|...+..-.+..-.+.|..+|.++.+.+ +.++..++++++..++ .|+...|.++|+--... -|| ...-+..+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 3556677777777777888999999988887 5677778888887665 48888899998887763 344 33334556
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..+...++-..|..+|++..++ +..+ ...|..++.--..-|+...+..+=+++...
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 6677788888999999876653 3333 457888888778888888777776666543
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00045 Score=61.73 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=74.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKS 594 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 594 (647)
..|..-...+.+.|++++|...|+.+++. .|+ ..++..++.+|...|++++|+..|+++++.. |
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y--P-------- 211 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY--P-------- 211 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--C--------
Confidence 33444444445668888888888888874 233 2477888888888888888888888888754 0
Q ss_pred HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 595 FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
+-+....++..++.++...|+.++|.++++++++..|..
T Consensus 212 --------~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 212 --------KSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred --------CCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 012346777778888888888888888888888765544
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.78 E-value=5.1e-05 Score=43.80 Aligned_cols=31 Identities=45% Similarity=0.929 Sum_probs=12.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 006396 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKP 271 (647)
Q Consensus 241 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 271 (647)
|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 3334444444444444444444444333333
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.78 E-value=4.9e-05 Score=43.88 Aligned_cols=33 Identities=58% Similarity=0.992 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC
Q 006396 135 SYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD 167 (647)
Q Consensus 135 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 167 (647)
+|+.++.+|++.|++++|.++|++|.+.|++||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 355555555555555555555555555555554
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0028 Score=63.03 Aligned_cols=145 Identities=16% Similarity=0.114 Sum_probs=103.6
Q ss_pred CCCCCHHHHHHHHHHHHH--cC---CHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhc--------CCHHHHHHHHHH
Q 006396 408 GLEPSAVTYTTFMNAYCE--EG---NIQRLLALLQEMETKAIGPT-HVTYTVVIKGLCKQ--------WKLQEAVQLLED 473 (647)
Q Consensus 408 ~~~~~~~~~~~l~~~~~~--~~---~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~--------g~~~~a~~~~~~ 473 (647)
..+.+...|...+++... .+ +...|..+|++..+. .|+ ...+..+..++... .+...+.+..++
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 346778888888887543 32 377899999999987 455 44555554444322 122344444444
Q ss_pred HHHc-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC
Q 006396 474 MYVI-GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 474 ~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 552 (647)
.... ..+.+...+..+.......|++++|...+++++. +.|+...|..++..+...|+.++|.+.++++.. +.|.
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~--L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~--L~P~ 485 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAID--LEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN--LRPG 485 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCC
Confidence 4332 2344567777777777778999999999999999 557889999999999999999999999999998 4666
Q ss_pred HHHHHH
Q 006396 553 KVAYTT 558 (647)
Q Consensus 553 ~~~~~~ 558 (647)
..+|..
T Consensus 486 ~pt~~~ 491 (517)
T PRK10153 486 ENTLYW 491 (517)
T ss_pred CchHHH
Confidence 666543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=6.5e-05 Score=51.65 Aligned_cols=56 Identities=16% Similarity=0.290 Sum_probs=50.6
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
...|++++|+..|+++.... |.+..++..++.+|.+.|++++|.++++++...++.
T Consensus 2 l~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 57 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN---------------------PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPD 57 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT---------------------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTT
T ss_pred hhccCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 56899999999999999987 889999999999999999999999999999987654
|
... |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.74 E-value=6.2e-05 Score=43.03 Aligned_cols=30 Identities=43% Similarity=0.643 Sum_probs=12.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 241 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
|+.++.+|.+.|+++.|.++|++|.+.|++
T Consensus 4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 4 YNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 444444444444444444444444444433
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00015 Score=49.16 Aligned_cols=59 Identities=15% Similarity=0.227 Sum_probs=38.2
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+...|++++|...|+++++.. +-+...+..++.++...|++++|+.+|+++++..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3455666777777777777777643 3344566777777777777777777777776654
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00052 Score=65.08 Aligned_cols=121 Identities=13% Similarity=0.139 Sum_probs=71.2
Q ss_pred CCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 340 IQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK--RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+.+......++..+....+.+.+..++.+.... ....-+.|..++++.|...|..+.+..++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555555566665666666666666665543 111223444566666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
.+|+.+.+.|++..|.++...|...+...+..|+...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 6666666666666666666666655544455554444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00097 Score=61.31 Aligned_cols=172 Identities=13% Similarity=0.067 Sum_probs=100.4
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-CcccHHHHHHHHHhcCChhHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVS----ETPR-NVYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
++++|...|+++-.. ....++++.|...|.++... +.+. -...|...+.++. .+++++|+..
T Consensus 30 ~~e~Aa~~y~~Aa~~------------fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k-~~~~~~Ai~~ 96 (282)
T PF14938_consen 30 DYEEAADLYEKAANC------------FKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYK-KGDPDEAIEC 96 (282)
T ss_dssp HHHHHHHHHHHHHHH------------HHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH-HTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHH------------HHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-hhCHHHHHHH
Confidence 566777666665432 12345666666666554321 1101 1123444444443 3477788877
Q ss_pred HHHhhc----CCCCcC--HHhHHHHHHHHHhc-CChhhHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHHHH
Q 006396 86 LQETAG----KEFGPS--VVSLNAIMSRYCKL-GFAEVAKGLFCLMLKY----GLHPD--AFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 86 ~~~~~~----~~~~~~--~~~~~~~~~~~~~~-g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~~~~~~a 152 (647)
++++.. .| .++ ...+..++..|... |+++.|.+.|+++... + .+. ...+..+...+.+.|++++|
T Consensus 97 ~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A 174 (282)
T PF14938_consen 97 YEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEA 174 (282)
T ss_dssp HHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHH
Confidence 777643 22 122 33677788888887 8999999988887753 2 211 33566777888899999999
Q ss_pred HHHHHHHhhCCCCC-----Chh-hHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 153 LEFTNDMGRHGVEP-----DAI-TYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 153 ~~~~~~~~~~~~~~-----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.++|+++....... ++. .+...+-++...|+...|.+.+++....
T Consensus 175 ~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 175 IEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred HHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99999887643221 121 2233444566788899999999988755
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00015 Score=50.65 Aligned_cols=61 Identities=15% Similarity=0.089 Sum_probs=56.0
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
...|...+++++|++++++++..+ |.++..|...+.++.+.|++++|.+.++++++.++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD---------------------PDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC---------------------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 457889999999999999999988 88899999999999999999999999999999776
Q ss_pred CC
Q 006396 640 LP 641 (647)
Q Consensus 640 ~~ 641 (647)
.+
T Consensus 61 ~~ 62 (73)
T PF13371_consen 61 DD 62 (73)
T ss_pred Cc
Confidence 44
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.005 Score=54.75 Aligned_cols=66 Identities=11% Similarity=-0.036 Sum_probs=40.6
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH--hHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV--SLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
++..+...+..+...|++++|+..|+.+....+.+... ....++.++.+.++++.|...+++.++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 33344455556667777777777777776654332211 2345566667777777777777777765
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.70 E-value=8.8e-05 Score=42.39 Aligned_cols=32 Identities=28% Similarity=0.591 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCC
Q 006396 415 TYTTFMNAYCEEGNIQRLLALLQEMETKAIGP 446 (647)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 446 (647)
+|+.++.+|.+.|+++.|..+|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 34444444444444444444444444444433
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0011 Score=62.90 Aligned_cols=121 Identities=15% Similarity=0.210 Sum_probs=72.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN 487 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 487 (647)
+.+......+++.+....+.+.+..++-..... ....-..|..++++.|.+.|..+.++.++..=...|+-||..+++
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 445555666666666666666666666665543 111112334466677777777777777776666667777777777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
.++..+.+.|++..|.++...|...+.-.++.++...+.+|.+
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~ 185 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYK 185 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH
Confidence 7777777777777777766666654444444444444444433
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00024 Score=48.93 Aligned_cols=66 Identities=18% Similarity=0.108 Sum_probs=49.1
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG-DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~ 583 (647)
++..|..++..+...|++++|+..|.++++.+ +.+...|..++.++...| ++++|+..++++++..
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 45677777788888888888888888888753 334557778888888888 6888888888877654
|
... |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00016 Score=49.69 Aligned_cols=54 Identities=17% Similarity=0.172 Sum_probs=34.2
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...|++++|.++|+++.+.. +.+...+..++.+|.+.|++++|..+++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34566777777777766642 3355566666777777777777777777666654
|
... |
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.01 Score=52.74 Aligned_cols=66 Identities=14% Similarity=-0.096 Sum_probs=48.1
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HH---HHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF-SY---NILIHGLCIAGSMEEALEFTNDMGRHGV 164 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~---~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 164 (647)
+...+...+..+...|++++|...|+.+.... |+.. .. -.++.++.+.+++++|...+++..+..+
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 44456566677778899999999999988763 3322 22 3456777888999999999999887643
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0044 Score=57.03 Aligned_cols=125 Identities=12% Similarity=0.037 Sum_probs=80.2
Q ss_pred CHHHHHHHHHHHHh----CCCCCC--HHHHHHHHHHHhhc-CChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHHH
Q 006396 498 DLRKAFQLLNQMWL----HNLEPT--SATYNILIDGLCVN-GDLKNADCLLVSLQEH----NISLT--KVAYTTIIKAHC 564 (647)
Q Consensus 498 ~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~~ 564 (647)
++++|...+++... .| .|+ ..++..+...|... |++++|.+.|+++.+. + .+. ..++..++..+.
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~ 166 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYA 166 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHH
Confidence 66666666665553 22 222 34566677788888 9999999999998852 2 221 236678889999
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ-EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.|++++|+++|+++.......+.. ..+. ..+...+-++...||...|.+.+++.....|
T Consensus 167 ~l~~y~~A~~~~e~~~~~~l~~~l~---------------~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~ 227 (282)
T PF14938_consen 167 RLGRYEEAIEIYEEVAKKCLENNLL---------------KYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDP 227 (282)
T ss_dssp HTT-HHHHHHHHHHHHHTCCCHCTT---------------GHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTST
T ss_pred HhCCHHHHHHHHHHHHHHhhccccc---------------chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9999999999999998754211110 1122 2344555677778999999999998876554
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.059 Score=50.43 Aligned_cols=123 Identities=17% Similarity=0.175 Sum_probs=77.8
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHH----HHHHHH---cCCHHHHHHHHHHHHhCCCCCCHH----HHHHHHHH--HH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTF----MNAYCE---EGNIQRLLALLQEMETKAIGPTHV----TYTVVIKG--LC 459 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l----~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~--~~ 459 (647)
.-++|..+++.+.+-. +-|...-|.+ =..|.. ...+.+-+.+-+-+.+.|++|-.+ .-|.+.++ +.
T Consensus 395 ~dekalnLLk~il~ft-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLy 473 (549)
T PF07079_consen 395 CDEKALNLLKLILQFT-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLY 473 (549)
T ss_pred ccHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHH
Confidence 3677777777766531 2233222222 122322 233445555555566677766433 33334333 45
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNI 523 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~ 523 (647)
..|++.++.-.-..+.+ +.|++.+|..+.-+.....++++|..++.. ++|+..+++.
T Consensus 474 sqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~~~ds 530 (549)
T PF07079_consen 474 SQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNERMRDS 530 (549)
T ss_pred hcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchhhHHH
Confidence 67899988877777766 578999999999888899999999999987 4677776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.04 Score=47.40 Aligned_cols=132 Identities=12% Similarity=0.013 Sum_probs=57.1
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHH-----H
Q 006396 170 TYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSV-----L 244 (647)
Q Consensus 170 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-----l 244 (647)
..++++..+.-.+++.-....+.+.++...+.++.....+.+.-.+.||.+.|...|+...+..-+.+..+.+. .
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence 33444444444555555555555555443333444444455555555555555555554443322222222222 2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 245 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
...+.-.+++..|...+.++...+. .|...-|.-.-+..-.|+...|++.++.+...
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 2223334455555555555444321 12222222222223335555555555555543
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0011 Score=52.92 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=69.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
..-+...|++++|..+|.-+.-.+ .-+..-|..|..++-..+++++|...|..+...+ ..|+..+...+.++...|+.
T Consensus 44 Ay~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~ 121 (165)
T PRK15331 44 AYEFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA 121 (165)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence 334456788999999888887743 2356777888888888888999988888877643 34555677788888888999
Q ss_pred HHHHHHHHHHHHc
Q 006396 570 HKAMTFFCQMVEK 582 (647)
Q Consensus 570 ~~A~~~~~~~~~~ 582 (647)
+.|+..|+.++..
T Consensus 122 ~~A~~~f~~a~~~ 134 (165)
T PRK15331 122 AKARQCFELVNER 134 (165)
T ss_pred HHHHHHHHHHHhC
Confidence 9998888888763
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.11 Score=50.76 Aligned_cols=99 Identities=9% Similarity=-0.009 Sum_probs=54.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
...|...+..-...|+++.+.-+|+...-. +..-...|-..++.....|+.+-+..++....+-.++..+.+...-...
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f 375 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF 375 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence 346666677777778888777777776531 1122334555555555557777777666665554333222222222222
Q ss_pred HhhcCCHHHHHHHHHHHHHc
Q 006396 318 LCEKEMITEARMYFDSLIMS 337 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~ 337 (647)
.-..|++..|..+++.+...
T Consensus 376 ~e~~~n~~~A~~~lq~i~~e 395 (577)
T KOG1258|consen 376 EESNGNFDDAKVILQRIESE 395 (577)
T ss_pred HHhhccHHHHHHHHHHHHhh
Confidence 33345666666666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0019 Score=47.41 Aligned_cols=75 Identities=21% Similarity=0.399 Sum_probs=41.6
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 385 IYGFCKNGKVADARRLLDTIKLHGL-EPSAVTYTTFMNAYCEEG--------NIQRLLALLQEMETKAIGPTHVTYTVVI 455 (647)
Q Consensus 385 ~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 455 (647)
|..+...+++.....+|+.+++.|+ -|+..+|+.++.+..+.. ..-..+.+|++|...+++|+..+|+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl 111 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL 111 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 3334444666666666666666666 566666666665554432 1233455555666555666666666665
Q ss_pred HHHH
Q 006396 456 KGLC 459 (647)
Q Consensus 456 ~~~~ 459 (647)
..+.
T Consensus 112 ~~Ll 115 (120)
T PF08579_consen 112 GSLL 115 (120)
T ss_pred HHHH
Confidence 5543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0021 Score=47.18 Aligned_cols=78 Identities=14% Similarity=0.229 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHhhCCCCCChhhHH
Q 006396 102 NAIMSRYCKLGFAEVAKGLFCLMLKYGL-HPDAFSYNILIHGLCIAG--------SMEEALEFTNDMGRHGVEPDAITYS 172 (647)
Q Consensus 102 ~~~~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 172 (647)
...+..+...+++...-.+|+.+.+.|+ .|+..+|+.++.+..+.. +.-..+.+|+.|...+++|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3444455555677777777777777666 566667776666655432 1223445555555555555555555
Q ss_pred HHHHHHH
Q 006396 173 ILAKGFH 179 (647)
Q Consensus 173 ~l~~~~~ 179 (647)
.++..+.
T Consensus 109 ivl~~Ll 115 (120)
T PF08579_consen 109 IVLGSLL 115 (120)
T ss_pred HHHHHHH
Confidence 5555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.028 Score=48.74 Aligned_cols=65 Identities=15% Similarity=0.044 Sum_probs=35.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
+..+...+..+...|++.+|+..|+.+....+.. .......++.++.+.|+++.|...+++.++.
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666666665543221 1234555566666666666666666666554
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.016 Score=49.74 Aligned_cols=134 Identities=10% Similarity=-0.013 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-----CCCCCHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-----NLEPTSATYNI 523 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~ 523 (647)
...+.++..+...|.+.-...++.+.++...+.++.....+++.-.+.||.+.|..+|++..+. ++.-+..+...
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 3445666777778888889999999998766778888899999999999999999999977653 22333444444
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
....|.-++++.+|...+.++...+ +.++...+.-+-+..-.|+..+|++.++.++...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 5556667789999999999998764 4456666776777777899999999999998865
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.00035 Score=38.78 Aligned_cols=28 Identities=36% Similarity=0.778 Sum_probs=13.8
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 275 TYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
+|+.++++|++.|++++|.++|++|.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHC
Confidence 3444555555555555555555554443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00039 Score=38.61 Aligned_cols=29 Identities=41% Similarity=0.755 Sum_probs=15.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 240 AYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 240 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
+|+.++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0045 Score=55.47 Aligned_cols=87 Identities=15% Similarity=-0.017 Sum_probs=40.2
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC--CCCChhhHHHHHHHHHhcC
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPD----AFSYNILIHGLCIAGSMEEALEFTNDMGRHG--VEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 182 (647)
.+.|++++|...|+.+++. .|+ +.++..+...|...|++++|...|+.+.+.- .+.....+..+..++...|
T Consensus 154 ~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~~~~~~g 231 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGVIMQDKG 231 (263)
T ss_pred HhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHHHHHHcC
Confidence 3445555555555555544 222 1244444555555555555555555554321 0112233333344444555
Q ss_pred ChhhHHHHHHHHHhc
Q 006396 183 QISGAWKVIQKLLIK 197 (647)
Q Consensus 183 ~~~~a~~~~~~~~~~ 197 (647)
+.++|.++++.+++.
T Consensus 232 ~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 232 DTAKAKAVYQQVIKK 246 (263)
T ss_pred CHHHHHHHHHHHHHH
Confidence 555555555555544
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0042 Score=56.71 Aligned_cols=138 Identities=11% Similarity=0.053 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQE----HN-ISLTK 553 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~ 553 (647)
..|..|.+.|.-.|+++.|+..-+.-+. .|-+. ....+..+..++.-.|+++.|.+.|+.... .| -....
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 3566677777778899998877654332 33222 246677888999999999999999887653 22 12234
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
....++..+|.-..++++|+.++.+-+...- . -.+..-...++..|+.++...|..++|+.+.+.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAq---------e------L~DriGe~RacwSLgna~~alg~h~kAl~fae~ 340 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQ---------E------LEDRIGELRACWSLGNAFNALGEHRKALYFAEL 340 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---------H------HHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 4677888999999999999999887553210 0 001234567788899999999999999888777
Q ss_pred HHh
Q 006396 634 MIK 636 (647)
Q Consensus 634 ~~~ 636 (647)
.++
T Consensus 341 hl~ 343 (639)
T KOG1130|consen 341 HLR 343 (639)
T ss_pred HHH
Confidence 654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0022 Score=44.69 Aligned_cols=57 Identities=12% Similarity=0.008 Sum_probs=36.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|.+.+++++|.+.++++...+ |.+...|...+.++...|++++|...++++++.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 45566666677777766666642 3344466666666666777777777777666655
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.011 Score=54.10 Aligned_cols=133 Identities=10% Similarity=-0.031 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCC-CCCHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMY----VIGVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNL-EPTSA 519 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~-~p~~~ 519 (647)
.|..+...|.-.|+++.|+...+.-. +.|-. .....+..+.+++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 45556666667788999887665433 22311 2335677888999999999999999887653 221 22355
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHH----cC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQE----HN-ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+...|...|.-..++++|+.++.+-+. .+ ..-....+.++..++...|..++|+.+.+..++.
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~~ 344 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLRS 344 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666788888888899999998876542 11 1223458889999999999999999998877653
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.11 Score=45.03 Aligned_cols=169 Identities=15% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--h
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKA--IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC--K 495 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 495 (647)
...+...|++.+|...|+.+.... .+-.....-.++.++.+.|+++.|...+++.++....-....+...+.+.+ .
T Consensus 12 a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 12 ALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHH
Confidence 344556666666666666666531 111122344555666666666666666666665421111111111111111 0
Q ss_pred -----------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 496 -----------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 496 -----------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+...+|... +..++.-|-.+.-..+|...+..+.+. + ...-..++..|.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~---------------~~~li~~yP~S~y~~~A~~~l~~l~~~-l---a~~e~~ia~~Y~ 152 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEE---------------FEELIKRYPNSEYAEEAKKRLAELRNR-L---AEHELYIARFYY 152 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHH---------------HHHHHHH-TTSTTHHHHHHHHHHHHHH-H---HHHHHHHHHHHH
T ss_pred hCccchhcccChHHHHHHHHH---------------HHHHHHHCcCchHHHHHHHHHHHHHHH-H---HHHHHHHHHHHH
Confidence 1112223333 334444444455555665555555431 0 112234677889
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC---HHHHHHHHHHHHcCCCHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD---QEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~ 628 (647)
+.|.+..|...++.+++.- |.. ..+...++.+|.+.|..+.|.
T Consensus 153 ~~~~y~aA~~r~~~v~~~y---------------------p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENY---------------------PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHS---------------------TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HcccHHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999998864 322 466778889999999888554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.07 Score=49.91 Aligned_cols=168 Identities=14% Similarity=0.024 Sum_probs=85.4
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIG---VTPDQITYNTIIRSFCK---CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC 529 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (647)
-+|....+++..+++.+.+.... +.....+-.....++.+ .|+.++|++++..++...-.+++.++..+++.|-
T Consensus 149 lSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyK 228 (374)
T PF13281_consen 149 LSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYK 228 (374)
T ss_pred HHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHH
Confidence 34555555666666665555421 11111222223333444 5666666666666444334555666666655543
Q ss_pred h---------cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HcCCcccchhhhhHHHHhh
Q 006396 530 V---------NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV-EKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 530 ~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 599 (647)
. ....++|...|.+.-+. .|+...=..++..+...|...+...-+++.. .. -...
T Consensus 229 D~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l-------------~~ll 293 (374)
T PF13281_consen 229 DLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKL-------------SSLL 293 (374)
T ss_pred HHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHH-------------HHHH
Confidence 2 12367788888777763 3443322233333333443222211111111 00 0011
Q ss_pred hhCC-CC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 600 LSNG-FP--PDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 600 ~~~~-~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.+.| .. .+--.+..++.+..-.|+.++|.+.+++|.+..
T Consensus 294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 1111 12 334455678899999999999999999999875
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00081 Score=47.68 Aligned_cols=68 Identities=15% Similarity=0.189 Sum_probs=52.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
.++..++.+|...|++++|+..++++++.. ....+ -.|+ ..++..++.++...|++++|++.++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~--------------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 70 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIE-EQLGD--------------DHPDTANTLNNLGECYYRLGDYEEALEYYQ 70 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHH-HHTTT--------------HHHHHHHHHHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHCC--------------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 478889999999999999999999998641 10000 0122 6788999999999999999999999
Q ss_pred HHHh
Q 006396 633 VMIK 636 (647)
Q Consensus 633 ~~~~ 636 (647)
++.+
T Consensus 71 ~al~ 74 (78)
T PF13424_consen 71 KALD 74 (78)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 9875
|
... |
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.007 Score=55.70 Aligned_cols=98 Identities=14% Similarity=-0.034 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
..+++.+..+|.+.+++..|+...++.++.+ ++|...+..-..++...|+++.|+..|+++++..
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-------------- 321 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLE-------------- 321 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------------
Confidence 4567778888999999999999999999865 6677788888999999999999999999999887
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHH-HHHHHHHHHhC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGS-VFELAAVMIKS 637 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~ 637 (647)
|.|..+-..+..+--+....++ ..++|..|...
T Consensus 322 -------P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 322 -------PSNKAARAELIKLKQKIREYEEKEKKMYANMFAK 355 (397)
T ss_pred -------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 6677777777766666555444 47888888754
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.012 Score=55.74 Aligned_cols=151 Identities=11% Similarity=0.041 Sum_probs=111.1
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006396 463 KLQEAVQLLEDMYVI-GVTPD-QITYNTIIRSFCK---------CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN 531 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 531 (647)
..+.|+.+|.+.... ...|+ ...|..+..++.. ..+..+|.+..++.++.+ +.|+.....++.+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 456788899998832 23444 4455555554432 234667888888888853 44788888899888989
Q ss_pred CChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 532 GDLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
|+++.|..+|+++... .||. .+|......+..+|+.++|.+.++++++.. +......+
T Consensus 352 ~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLs-------------------P~~~~~~~ 410 (458)
T PRK11906 352 GQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQLE-------------------PRRRKAVV 410 (458)
T ss_pred cchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-------------------chhhHHHH
Confidence 9999999999999984 5654 488888888999999999999999999876 22333566
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 611 CEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
....+..|+.++ .++|.+++-+-.+
T Consensus 411 ~~~~~~~~~~~~-~~~~~~~~~~~~~ 435 (458)
T PRK11906 411 IKECVDMYVPNP-LKNNIKLYYKETE 435 (458)
T ss_pred HHHHHHHHcCCc-hhhhHHHHhhccc
Confidence 666777888774 5788888766443
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.14 Score=48.03 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=23.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.+++.++.-.|++++|.+..++|.+..
T Consensus 307 d~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 307 DVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 45677888888899999999999988764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.28 Score=48.12 Aligned_cols=185 Identities=15% Similarity=0.093 Sum_probs=103.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMN 421 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 421 (647)
+...|...+......|+.+...-.|++..-. +..-...|-..+.-....|+.+-+..++....+-.++..+.+-..-..
T Consensus 296 ql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 296 QLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 4566777777788888888888888877542 111233444444444555888888877766655433322222211122
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCCHHHHHH---HHHHHHHcCCCCCHHHHHHHHH-----H
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGPTHVT-YTVVIKGLCKQWKLQEAVQ---LLEDMYVIGVTPDQITYNTIIR-----S 492 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~---~~~~~~~~~~~~~~~~~~~l~~-----~ 492 (647)
..-..|++..|..+++.+.+.- |+... -..-+....+.|+.+.+.. ++..... | ..+......+.- .
T Consensus 375 f~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~-~-~~~~~i~~~l~~~~~r~~ 450 (577)
T KOG1258|consen 375 FEESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYE-G-KENNGILEKLYVKFARLR 450 (577)
T ss_pred HHHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcc-c-ccCcchhHHHHHHHHHHH
Confidence 2334678888888888887753 44332 2223344456677776663 2222222 1 112222222221 1
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
+.-.++.+.|..++.++.+. .+++...|..+++.....+
T Consensus 451 ~~i~~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 451 YKIREDADLARIILLEANDI-LPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHhcCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence 23457788888888888774 3455666777776665554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.0081 Score=48.98 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.+...++..+...|++++|....++++... |-+...|..++.+|...|+..+|.++|++
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d---------------------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~ 121 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD---------------------PYDEEAYRLLMRALAAQGRRAEALRVYER 121 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS---------------------TT-HHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 356677888999999999999999999988 88999999999999999999999999988
Q ss_pred HH-----hCCCCCCCC
Q 006396 634 MI-----KSGLLPDKF 644 (647)
Q Consensus 634 ~~-----~~~~~~~~~ 644 (647)
+. +.|+.|...
T Consensus 122 ~~~~l~~elg~~Ps~~ 137 (146)
T PF03704_consen 122 YRRRLREELGIEPSPE 137 (146)
T ss_dssp HHHHHHHHHS----HH
T ss_pred HHHHHHHHhCcCcCHH
Confidence 74 467777653
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.048 Score=51.81 Aligned_cols=148 Identities=12% Similarity=0.122 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 428 NIQRLLALLQEMETK-AIGPT-HVTYTVVIKGLCK---------QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~-~~~~~-~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+.|..+|.+.... .+.|+ ...|..+..++.. .....+|.++.++..+.+ +.|+.....+..+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 457788899988832 23444 4455555544432 234567788888888876 77888888888888888
Q ss_pred CCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV---AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A 572 (647)
++++.|...|++... +.|| ...|......+.-.|+.++|.+.+++..+ +.|... ..-..+..|+. ...+.|
T Consensus 352 ~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alr--LsP~~~~~~~~~~~~~~~~~-~~~~~~ 426 (458)
T PRK11906 352 GQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQ--LEPRRRKAVVIKECVDMYVP-NPLKNN 426 (458)
T ss_pred cchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHcC-Cchhhh
Confidence 889999999999998 6676 77888888888899999999999999887 455433 33334445555 456677
Q ss_pred HHHHHHHHH
Q 006396 573 MTFFCQMVE 581 (647)
Q Consensus 573 ~~~~~~~~~ 581 (647)
+.+|-+-.+
T Consensus 427 ~~~~~~~~~ 435 (458)
T PRK11906 427 IKLYYKETE 435 (458)
T ss_pred HHHHhhccc
Confidence 777665443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.013 Score=49.15 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN 218 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (647)
+-|++++++|...|+-||..++..++..+.+.+.
T Consensus 120 ~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 120 ECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 4455666666666666666666666666655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0089 Score=52.16 Aligned_cols=101 Identities=19% Similarity=0.187 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
.|+.-+ .+.+.|++.+|...|...++.. +- .+..+.+|+.+++..|++++|..+|..+.+.. +
T Consensus 144 ~Y~~A~-~~~ksgdy~~A~~~F~~fi~~Y-P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P----------- 209 (262)
T COG1729 144 LYNAAL-DLYKSGDYAEAEQAFQAFIKKY-PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-P----------- 209 (262)
T ss_pred HHHHHH-HHHHcCCHHHHHHHHHHHHHcC-CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-C-----------
Confidence 454443 3456677888888888888742 22 23467778888888888888888888887643 0
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.-+.-++.+..|+.+..+.|+.++|..+|+.+.+.=|.
T Consensus 210 ------~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~ 247 (262)
T COG1729 210 ------KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPG 247 (262)
T ss_pred ------CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 01334678888888888888888888888888775443
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.037 Score=44.46 Aligned_cols=85 Identities=11% Similarity=-0.117 Sum_probs=59.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|++++|..+|+-+...++ .++.-|..|+.++-..+++++|+..|..+...+. .|+........++...|+.+.|+.
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A~~ 126 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKARQ 126 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHHHH
Confidence 67777777777776665444 5566677777777777777777777777655443 244456667777777777777777
Q ss_pred HHHHHHh
Q 006396 120 LFCLMLK 126 (647)
Q Consensus 120 ~~~~~~~ 126 (647)
.|+.+..
T Consensus 127 ~f~~a~~ 133 (165)
T PRK15331 127 CFELVNE 133 (165)
T ss_pred HHHHHHh
Confidence 7777776
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.029 Score=47.12 Aligned_cols=104 Identities=13% Similarity=0.126 Sum_probs=66.1
Q ss_pred CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 445 GPTHVTYTVVIKGLCK-----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
..+..+|..+++.+.+ .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+- -..+|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ------------ 109 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQ------------ 109 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHH------------
Confidence 3466777777777653 35566666667777777777777777777776554 2211 111111
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
.+..-| -.+-+-|++++++|...|+-||..++..+++.+.+.+
T Consensus 110 ---~~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 110 ---AEFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred ---HHhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhcccc
Confidence 111111 1234568899999999999999999999998885544
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.017 Score=50.54 Aligned_cols=90 Identities=16% Similarity=-0.016 Sum_probs=41.0
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCC
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL--HPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 148 (647)
+.+.|++.+|...|...++..+.- ....+.-+..++...|+++.|..+|..+.+... +.-+.....|..+..+.|+
T Consensus 151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcC
Confidence 334445555555555554443221 112344455555555555555555555544310 0112344444444555555
Q ss_pred HHHHHHHHHHHhhC
Q 006396 149 MEEALEFTNDMGRH 162 (647)
Q Consensus 149 ~~~a~~~~~~~~~~ 162 (647)
.++|..+|+++.+.
T Consensus 231 ~d~A~atl~qv~k~ 244 (262)
T COG1729 231 TDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHHHHHHH
Confidence 55555555555443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0049 Score=58.14 Aligned_cols=65 Identities=18% Similarity=0.086 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV----AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...++.++.+|...|++++|+..|++.++ +.|+.. +|..++.+|...|+.++|+..++++++.+
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALe--L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALE--LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 588899999999999999999999999998 467643 58999999999999999999999999864
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.2 Score=44.44 Aligned_cols=140 Identities=14% Similarity=0.039 Sum_probs=72.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..+++.+|..+|+.+....+ .+..+-..++.++...|+++.|..++..+..............-+..+.+.....+...
T Consensus 146 ~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 146 EAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 55666666666666665443 34555666666666777777666666665443211111122233444555555555555
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CCCChhhHHHHHHHHHhcC
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHG-VEPDAITYSILAKGFHLLS 182 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~ 182 (647)
+-++.-.. +.|...-..+...+...|+.+.|.+.+-.+.+.+ -.-|...-..++..+...|
T Consensus 225 l~~~~aad--Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g 286 (304)
T COG3118 225 LQRRLAAD--PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG 286 (304)
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence 54444443 3355555556666666666666665554443321 1123344444554444444
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.015 Score=43.82 Aligned_cols=90 Identities=23% Similarity=0.186 Sum_probs=51.7
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcC
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK---VAYTTIIKAHCAEG 567 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g 567 (647)
+....|+++.|++.|.+.+. +-| ....||.-..++.-.|+.++|++-++++++..-+... ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 34556666666666666665 333 4666666666666666666666666666653111111 13333444555566
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
+-+.|..-|+.+.+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 6666666666666665
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.13 Score=41.76 Aligned_cols=62 Identities=21% Similarity=0.281 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...++..+...|++++|.++.+++.... |.+...|..++.++...|+..+|++.|+++.+
T Consensus 63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 344566677778888888888888888753 45666888888888888888888888887753
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0049 Score=43.63 Aligned_cols=64 Identities=13% Similarity=0.129 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEH--NISL---T-KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..+++.+..+|...|++++|+..+++.++. ...+ + ..++..++.++...|++++|+++++++.+
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456677777777777777777777777642 1111 1 33667777888888888888888887765
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0034 Score=38.21 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
.++..+..+|...|++++|++.++++++.. |.++.+|..++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~---------------------P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD---------------------PDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------------cCCHHHHHHhhh
Confidence 467889999999999999999999999987 888888887764
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.41 Score=45.01 Aligned_cols=440 Identities=12% Similarity=0.027 Sum_probs=205.5
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 49 DLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 49 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
++=+++. .+| .|..+|..|+.-+..+|..++.+++++++..- ++--+.+|...+++-....++..+..+|.+.+..
T Consensus 30 rLRerIk-dNP-tnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k- 105 (660)
T COG5107 30 RLRERIK-DNP-TNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK- 105 (660)
T ss_pred HHHHHhh-cCc-hhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-
Confidence 4444443 233 67788999999999999999999999998763 2223457888888888888999999999998876
Q ss_pred CCCCHHHHHHHHHHHHhcC-----C-HHHHHHHHHHHhh-CCCCC-ChhhHHHHHHHHH---------hcCChhhHHHHH
Q 006396 129 LHPDAFSYNILIHGLCIAG-----S-MEEALEFTNDMGR-HGVEP-DAITYSILAKGFH---------LLSQISGAWKVI 191 (647)
Q Consensus 129 ~~~~~~~~~~l~~~~~~~~-----~-~~~a~~~~~~~~~-~~~~~-~~~~~~~l~~~~~---------~~~~~~~a~~~~ 191 (647)
..+...|...+.-..+.+ + -....+.|+-... .+++| ....|+.....+. .+.+.+.....+
T Consensus 106 -~l~ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y 184 (660)
T COG5107 106 -SLNLDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGY 184 (660)
T ss_pred -hccHhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHH
Confidence 345666666665444332 1 1112233333332 12333 3344555444332 223345566666
Q ss_pred HHHHhcCCCCCcch------HHHHHHHHHh-------cCChHHHHHHHHHHHh--CCCCc----CcccHHHHHH------
Q 006396 192 QKLLIKGSDPDIVT------YTVLICGYCQ-------IGNVEEGLKLREVMLS--QGFKL----NVIAYSVLLS------ 246 (647)
Q Consensus 192 ~~~~~~~~~~~~~~------~~~l~~~~~~-------~~~~~~a~~~~~~~~~--~~~~~----~~~~~~~l~~------ 246 (647)
.+++...+..-... |..-+..... ..-+-.|.+.++++.. .|+.. +..+++.+.+
T Consensus 185 ~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~W 264 (660)
T COG5107 185 MRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNW 264 (660)
T ss_pred HHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchh
Confidence 66665422100111 1111111100 1113445555555533 22211 1112222111
Q ss_pred -----HHHhcC-----C-h-hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 006396 247 -----SMCKSG-----R-I-DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAI 314 (647)
Q Consensus 247 -----~~~~~g-----~-~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 314 (647)
--...| + . ....-++++.... +.-....|..--..+...++-+.|+......... .|. ....+
T Consensus 265 lNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~--sps--L~~~l 339 (660)
T COG5107 265 LNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEM--SPS--LTMFL 339 (660)
T ss_pred hhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccC--CCc--hheeH
Confidence 000000 0 0 0000011111110 0011112222222223334444444444332211 122 11112
Q ss_pred HHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhc
Q 006396 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 315 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (647)
...+...++-+.....|+...+. ...--..+..-.. -|+++...+++-+-.. .-..+|...+....+.
T Consensus 340 se~yel~nd~e~v~~~fdk~~q~-----L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~----k~t~v~C~~~N~v~r~ 410 (660)
T COG5107 340 SEYYELVNDEEAVYGCFDKCTQD-----LKRKYSMGESESASKVDNNFEYSKELLLKRIN----KLTFVFCVHLNYVLRK 410 (660)
T ss_pred HHHHhhcccHHHHhhhHHHHHHH-----HHHHHhhhhhhhhccccCCccccHHHHHHHHh----hhhhHHHHHHHHHHHH
Confidence 22222333333333333332210 0000000000000 1122212221111111 1234455566666666
Q ss_pred CCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 006396 392 GKVADARRLLDTIKLHG-LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTY-TVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~ 469 (647)
.-.+.|..+|-+..+.+ +.+++..+++++..++ .|++..|..+|+--..+ .||...| .-.+.-+...++-+.|..
T Consensus 411 ~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fLi~inde~nara 487 (660)
T COG5107 411 RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFLIRINDEENARA 487 (660)
T ss_pred hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCcHHHHHH
Confidence 66777777777777766 4566777777776553 46677777777765444 2343333 334444556677777777
Q ss_pred HHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 470 LLEDMYVIGVTPD--QITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 470 ~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+|+..+.. +..+ ...|..++..-..-|++..+..+=+++..
T Consensus 488 LFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 488 LFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 77755442 1222 45677777766777777777666666665
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.2 Score=49.15 Aligned_cols=88 Identities=15% Similarity=0.101 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH--------
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI-------- 484 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------- 484 (647)
..+...+...+.+...+.-|-++|..|-.. ..+++.+...+++.+|..+-++..+. .||..
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLA 815 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLA 815 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhh
Confidence 344444444455566667777777766432 24556667777777777776665542 23321
Q ss_pred ---HHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 485 ---TYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 485 ---~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
-+...-.+|.+.|+-.+|.++++++..
T Consensus 816 E~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 816 ENDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 123334566777777888887777664
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.038 Score=51.10 Aligned_cols=95 Identities=15% Similarity=0.015 Sum_probs=67.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
.++.++.++.+.+++..|+.....++..++ +|...+..-..++...|+++.|+..|+++++.. +.|-.+-+.++..-.
T Consensus 259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~-~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 259 CHLNLAACYLKLKEYKEAIESCNKVLELDP-NNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQ 336 (397)
T ss_pred HhhHHHHHHHhhhhHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 466777888888888888888888888763 477788888888888888888888888888874 334444445554444
Q ss_pred hcCCHH-HHHHHHHHHhh
Q 006396 145 IAGSME-EALEFTNDMGR 161 (647)
Q Consensus 145 ~~~~~~-~a~~~~~~~~~ 161 (647)
+..++. ...++|..|..
T Consensus 337 k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 433333 33567777754
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.029 Score=42.35 Aligned_cols=88 Identities=14% Similarity=0.043 Sum_probs=53.4
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH---hHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV---SLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~g~~~~ 116 (647)
..|+++.|++.|.+.+.--| ..+++|+.-.+++.-+|+.++|++-+.++++..-..... .|..-...|...|+-+.
T Consensus 55 E~g~Ld~AlE~F~qal~l~P-~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd~ 133 (175)
T KOG4555|consen 55 EAGDLDGALELFGQALCLAP-ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDDA 133 (175)
T ss_pred hccchHHHHHHHHHHHHhcc-cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchHH
Confidence 56677777777776665332 556667777777777777777777666665532111222 34444455666677777
Q ss_pred HHHHHHHHHhCC
Q 006396 117 AKGLFCLMLKYG 128 (647)
Q Consensus 117 a~~~~~~~~~~~ 128 (647)
|..=|+.+.+.|
T Consensus 134 AR~DFe~AA~LG 145 (175)
T KOG4555|consen 134 ARADFEAAAQLG 145 (175)
T ss_pred HHHhHHHHHHhC
Confidence 776666666655
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.35 Score=42.17 Aligned_cols=58 Identities=16% Similarity=0.115 Sum_probs=27.6
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCC-c-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFG-P-SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
+...++.|++++|...|+.+....+. | ...+...++-++.+.++++.|+..+++..+.
T Consensus 41 g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 41 GLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 33345555555555555555443221 0 1223444444455555555555555555543
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.036 Score=52.51 Aligned_cols=67 Identities=10% Similarity=0.001 Sum_probs=56.5
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCH--HhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSV--VSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.++..|+.++.+|...|++++|+..|++++...+.... .+|..+..+|...|+.++|+..++++++.
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999886544221 35899999999999999999999999875
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.14 Score=50.86 Aligned_cols=163 Identities=17% Similarity=0.110 Sum_probs=108.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHH
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ------ITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
..++....-.|+-+.+++.+....+.+---.+ ..|..++..++. ..+.+.|.++++.+.+ .-|+...|
T Consensus 192 ~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lf 269 (468)
T PF10300_consen 192 LKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALF 269 (468)
T ss_pred HHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHH
Confidence 35556666678888888887776653211111 123333333332 4578889999999988 46776666
Q ss_pred HH-HHHHHhhcCChhhHHHHHHHHHHc--CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 522 NI-LIDGLCVNGDLKNADCLLVSLQEH--NI-SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 522 ~~-l~~~~~~~g~~~~A~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
.. -.+.+...|+.++|.+.++++... .. +.....+..++.++...++|++|.+.|.++.+..
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------------- 335 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------------- 335 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc--------------
Confidence 44 356677889999999999987641 11 1123366778888999999999999999999865
Q ss_pred hhhhCCCCCCHHHHH-HHHHHHHcCCCH-------HHHHHHHHHHHhC
Q 006396 598 MMLSNGFPPDQEICE-VMLIAFHQGGDL-------GSVFELAAVMIKS 637 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~-~l~~~~~~~g~~-------~~A~~~~~~~~~~ 637 (647)
.-....|. ..+-++...|+. ++|.+.++++...
T Consensus 336 -------~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l 376 (468)
T PF10300_consen 336 -------KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKL 376 (468)
T ss_pred -------ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence 22334444 344555667888 8888888887643
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.63 E-value=1 Score=46.18 Aligned_cols=53 Identities=8% Similarity=0.182 Sum_probs=27.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMW 510 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 510 (647)
++..+.+..+++.+..+.+..- +-++..|..++..+.+.+.++...+...+++
T Consensus 711 l~~~~~q~~d~E~~it~~~~~g----~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl 763 (933)
T KOG2114|consen 711 LMLYFQQISDPETVITLCERLG----KEDPSLWLHALKYFVSEESIEDCYEIVYKVL 763 (933)
T ss_pred HHHHHHHhhChHHHHHHHHHhC----ccChHHHHHHHHHHhhhcchhhHHHHHHHHH
Confidence 3444445555555555544432 2255566666666666665555544444443
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.39 Score=42.73 Aligned_cols=153 Identities=16% Similarity=0.064 Sum_probs=95.9
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.-..-.......|++.+|..+|..+.+.. +.+...-..++.+|...|+.+.|..++..+...-..........-+..+.
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~ 214 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLE 214 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHH
Confidence 34444555677888999999998888764 44556677788888889999999999888754311111111122344455
Q ss_pred hcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcCcccHHHHHHHHHhcCChhH
Q 006396 180 LLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGF-KLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+.....+...+-++... .| |...-..+...+...|+.+.|.+.+-.+.+.+. ..+...-..++..+.-.|.-+.
T Consensus 215 qaa~~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 215 QAAATPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred HHhcCCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 55555555555555443 34 455666777788888888888877666665531 1244556666666666554333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.6 Score=41.97 Aligned_cols=165 Identities=16% Similarity=0.056 Sum_probs=65.0
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH-H
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK-G 457 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~-~ 457 (647)
........+...++...+...+...... ........+......+...+++..+...+.........+ ......... .
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 139 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence 3344444444555555555554444431 112233334444444444444555555555444432111 111111111 3
Q ss_pred HHhcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGV--TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDL 534 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 534 (647)
+...|+++.+...+........ ......+......+...++.+.+...+....... .. ....+..+...+...+++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 218 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLGKY 218 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcccH
Confidence 4444555555555544433110 0111222222222333444444444444444421 11 133344444444444444
Q ss_pred hhHHHHHHHHHH
Q 006396 535 KNADCLLVSLQE 546 (647)
Q Consensus 535 ~~A~~~~~~~~~ 546 (647)
+.|...+.....
T Consensus 219 ~~a~~~~~~~~~ 230 (291)
T COG0457 219 EEALEYYEKALE 230 (291)
T ss_pred HHHHHHHHHHHh
Confidence 444444444444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.35 Score=47.60 Aligned_cols=171 Identities=15% Similarity=0.123 Sum_probs=77.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh-----HHHHHHHHHhcCChhhHHHHHHHHHhC--CC-CCCHHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS-----LNAIMSRYCKLGFAEVAKGLFCLMLKY--GL-HPDAFSYNIL 139 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~g~~~~a~~~~~~~~~~--~~-~~~~~~~~~l 139 (647)
.++..+.-+|++.+|..+|.+.=..+. ..+. ....+.-+...|..++-..+.++-... ++ .|. +.
T Consensus 637 LlA~~~Ay~gKF~EAAklFk~~G~enR--AlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePk-----aA 709 (1081)
T KOG1538|consen 637 LLADVFAYQGKFHEAAKLFKRSGHENR--ALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPK-----AA 709 (1081)
T ss_pred HHHHHHHhhhhHHHHHHHHHHcCchhh--HHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcH-----HH
Confidence 455666777777777777765321100 0111 122333445555555555444432221 00 121 12
Q ss_pred HHHHHhcCCHHHHHHHHHH------HhhCC---CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHH
Q 006396 140 IHGLCIAGSMEEALEFTND------MGRHG---VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLI 210 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 210 (647)
..++...|+..+|..+.-+ +.+.+ ...+..+...+..-+.+...+.-|-++|.+|-. ..+++
T Consensus 710 AEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiV 780 (1081)
T KOG1538|consen 710 AEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLV 780 (1081)
T ss_pred HHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHh
Confidence 2333344555554433211 00000 122334444444445555566666666666532 23455
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH
Q 006396 211 CGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258 (647)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 258 (647)
..+...+++++|..+-+...+. . ..+|.-..+-++...++++|.
T Consensus 781 qlHve~~~W~eAFalAe~hPe~--~--~dVy~pyaqwLAE~DrFeEAq 824 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF--K--DDVYMPYAQWLAENDRFEEAQ 824 (1081)
T ss_pred hheeecccchHhHhhhhhCccc--c--ccccchHHHHhhhhhhHHHHH
Confidence 5666667777776666554433 2 223333344444444444443
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.41 Score=41.09 Aligned_cols=91 Identities=15% Similarity=0.075 Sum_probs=50.2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhc----CCCCCc-chHHHHHHHHHhcCChHHHHHHHHHHHhCC---CCcCcccHH
Q 006396 171 YSILAKGFHLLSQISGAWKVIQKLLIK----GSDPDI-VTYTVLICGYCQIGNVEEGLKLREVMLSQG---FKLNVIAYS 242 (647)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 242 (647)
+....+++.+...+++|-..|.+-... ...++. ..+...|-.+....|+..|.+.++...+.+ -..+..+..
T Consensus 153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le 232 (308)
T KOG1585|consen 153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE 232 (308)
T ss_pred HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence 445556666666666665554443211 111221 235555566667778888888887755443 122445666
Q ss_pred HHHHHHHhcCChhHHHHHHH
Q 006396 243 VLLSSMCKSGRIDEALGLLY 262 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~ 262 (647)
.|+.+| ..|+.+++..++.
T Consensus 233 nLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 233 NLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHh-ccCCHHHHHHHHc
Confidence 677666 4566666555543
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.97 Score=43.39 Aligned_cols=91 Identities=12% Similarity=0.010 Sum_probs=52.6
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC-IAGSMEEALEFTNDMG 160 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~ 160 (647)
-..+|+.+... +..|+..|...+..+.+.+.+.+...+|.+|++.+ +.++..|-.-..... ...+.+.|..+|....
T Consensus 90 Iv~lyr~at~r-f~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~H-p~~~dLWI~aA~wefe~n~ni~saRalflrgL 167 (568)
T KOG2396|consen 90 IVFLYRRATNR-FNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKH-PNNPDLWIYAAKWEFEINLNIESARALFLRGL 167 (568)
T ss_pred HHHHHHHHHHh-cCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence 33455555543 33477777777777777777777777887777764 334444433333322 2334777777777776
Q ss_pred hCCCCCChhhHHHHH
Q 006396 161 RHGVEPDAITYSILA 175 (647)
Q Consensus 161 ~~~~~~~~~~~~~l~ 175 (647)
+.+ +.++..|...+
T Consensus 168 R~n-pdsp~Lw~eyf 181 (568)
T KOG2396|consen 168 RFN-PDSPKLWKEYF 181 (568)
T ss_pred hcC-CCChHHHHHHH
Confidence 653 22444444433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.40 E-value=0.53 Score=45.23 Aligned_cols=145 Identities=13% Similarity=0.038 Sum_probs=79.7
Q ss_pred HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 424 CEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAF 503 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 503 (647)
-+..+++.-++.-++..+. .|+..+...++ +--......++.+++++..+.|- .. +.+.......-
T Consensus 179 WRERnp~aRIkaA~eALei--~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkAgE----~~-------lg~s~~~~~~g 244 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEI--NPDCADAYILL-AEEEASTIVEAEELLRQAVKAGE----AS-------LGKSQFLQHHG 244 (539)
T ss_pred HhcCCHHHHHHHHHHHHHh--hhhhhHHHhhc-ccccccCHHHHHHHHHHHHHHHH----Hh-------hchhhhhhccc
Confidence 3445555555555555543 34433222221 22234557888888888776541 00 00000001111
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 504 QLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..++........|-..+-..+..++.+.|+.++|++.++++.+.. +. +..+...++.++...+.+.++..++.+--+
T Consensus 245 ~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~-p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 245 HFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF-PNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred chhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC-CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111222222223334444567777888899999999988888642 22 334777888888888999988888888654
Q ss_pred cC
Q 006396 582 KG 583 (647)
Q Consensus 582 ~~ 583 (647)
..
T Consensus 324 i~ 325 (539)
T PF04184_consen 324 IS 325 (539)
T ss_pred cc
Confidence 43
|
The molecular function of this protein is uncertain. |
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.3 Score=41.84 Aligned_cols=206 Identities=12% Similarity=-0.034 Sum_probs=100.5
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..|..-..+|....++++|...+.++.+.. ..+. .+.... ..++.|.-+.+++.+. +--...|+.-...|
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~y-Ennr-slfhAA------KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGY-ENNR-SLFHAA------KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHH-Hhcc-cHHHHH------HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 345555667888888888888877776321 1122 222222 2234444444444432 11223455556677
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC--CCCC---cchHHHHHHHHHhcCC
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG--SDPD---IVTYTVLICGYCQIGN 218 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~~~~---~~~~~~l~~~~~~~~~ 218 (647)
..+|.++.|-..+++.-+. ..+.+++.|++++++....= -..+ ...+....+.+.+...
T Consensus 102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 7778877777666665331 12233444555544433210 0001 1123333445556666
Q ss_pred hHHHHHHHHHHHhCC--CC--cC-cccHHHHHHHHHhcCChhHHHHHHHHHHHCC---CCCCHhhHHHHHHHHHccCCHH
Q 006396 219 VEEGLKLREVMLSQG--FK--LN-VIAYSVLLSSMCKSGRIDEALGLLYEMEAVG---LKPDLVTYSILIRGLCKQDKVH 290 (647)
Q Consensus 219 ~~~a~~~~~~~~~~~--~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~ 290 (647)
+++|-..+.+-.... +. ++ -..|...|-.+.-..++..|...+++--+.+ -+.+..+...|+.+|- .|+.+
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E 244 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIE 244 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHH
Confidence 655554443322110 01 11 1234455556666677777777777743321 1224455666666543 45555
Q ss_pred HHHHHH
Q 006396 291 KAIQLY 296 (647)
Q Consensus 291 ~a~~~~ 296 (647)
++.+++
T Consensus 245 ~~~kvl 250 (308)
T KOG1585|consen 245 EIKKVL 250 (308)
T ss_pred HHHHHH
Confidence 555444
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.36 Score=40.56 Aligned_cols=87 Identities=9% Similarity=-0.056 Sum_probs=54.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..|-.+.|+--|.+.+...| .-+..++.++-.+...|+++.|.+.|+...+.++..+-...+.-+. +.-.|+++-|.+
T Consensus 77 SlGL~~LAR~DftQaLai~P-~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LAq~ 154 (297)
T COG4785 77 SLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLAQD 154 (297)
T ss_pred hhhHHHHHhhhhhhhhhcCC-CcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhhHH
Confidence 44555666666666655443 4566777777777777778777777777777655433333333333 334677777777
Q ss_pred HHHHHHhCC
Q 006396 120 LFCLMLKYG 128 (647)
Q Consensus 120 ~~~~~~~~~ 128 (647)
-|.+.-+..
T Consensus 155 d~~~fYQ~D 163 (297)
T COG4785 155 DLLAFYQDD 163 (297)
T ss_pred HHHHHHhcC
Confidence 766666653
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.0063 Score=34.32 Aligned_cols=25 Identities=16% Similarity=0.295 Sum_probs=23.3
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
|.+..+|..++.+|...|++++|++
T Consensus 10 P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 10 PNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 8889999999999999999999963
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.35 Score=46.34 Aligned_cols=138 Identities=12% Similarity=-0.021 Sum_probs=70.1
Q ss_pred ChhhHHHHHHHHHhCCCCcCHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 11 MVHDAVFVIAKMKELDLKVSIQTYNSLLY--NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 11 ~~~~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
+...-++.-.++++. .|+....-.+++ .+....+|.++|+++.+.+- ..+......+... ..++.
T Consensus 183 np~aRIkaA~eALei--~pdCAdAYILLAEEeA~Ti~Eae~l~rqAvkAgE-------~~lg~s~~~~~~g----~~~e~ 249 (539)
T PF04184_consen 183 NPQARIKAAKEALEI--NPDCADAYILLAEEEASTIVEAEELLRQAVKAGE-------ASLGKSQFLQHHG----HFWEA 249 (539)
T ss_pred CHHHHHHHHHHHHHh--hhhhhHHHhhcccccccCHHHHHHHHHHHHHHHH-------Hhhchhhhhhccc----chhhh
Confidence 344444455555554 355555555555 45566777777777664221 0000000000000 01111
Q ss_pred hhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 89 TAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLH-PDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
.......+-..+-..+..++.+.|+.++|.+.|+++.+.... .+..+...|+.++...+.+.++..++.+-.+
T Consensus 250 ~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 250 WHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred hhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 111111222333445566666777788787777777764211 1233566677777777777777777777643
|
The molecular function of this protein is uncertain. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.2 Score=42.85 Aligned_cols=167 Identities=7% Similarity=0.037 Sum_probs=93.0
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
.|....-+++..+...-...-...+..+|...| .+...+..++.+|... ..+.-..+|+++.+..+ .|...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~df-nDvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDF-NDVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcc-hhHHHHHHHH
Confidence 444555566666666656666666666666543 4555566666666655 44555666666666322 1233333444
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISL--T---KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
..|.+ ++.+.+..+|.++...=++. + ...|..+.. .-..+.+....+..+.. .
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~--~i~dD~D~fl~l~~kiq-------------------t 197 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPE--LIGDDKDFFLRLQKKIQ-------------------T 197 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHH--hccccHHHHHHHHHHHH-------------------H
Confidence 44444 66666666666666431111 1 112322221 11234444444444443 3
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
..|...-...+..+-.-|....++++|+++++.+++.+
T Consensus 198 ~lg~~~~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d 235 (711)
T COG1747 198 KLGEGRGSVLMQDVYKKYSENENWTEAIRILKHILEHD 235 (711)
T ss_pred hhccchHHHHHHHHHHHhccccCHHHHHHHHHHHhhhc
Confidence 34555556677777788889999999999999877654
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.15 Score=45.85 Aligned_cols=153 Identities=10% Similarity=0.050 Sum_probs=80.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH----HHHHHHHhcCCHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYN----TIIRSFCKCKDLR 500 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~~~~~ 500 (647)
..|+..+|-..++++.+. .+.|...+...-.+|.-.|+...-...++++.-. -.+|...|. .+.-++..+|-++
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 345556665666665554 2445555665566666666666666666665542 123332222 2222333566666
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLTKVAYTTIIKAHCAEGDVHKAMTFFC 577 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (647)
+|++..++..+.+ +.|.....++...+...|+..++.++..+-... +--.-...|...+-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 6666666666632 234455555555566666666666665544321 101112234444445555666666666666
Q ss_pred HHH
Q 006396 578 QMV 580 (647)
Q Consensus 578 ~~~ 580 (647)
+-+
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 533
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.16 E-value=1.1 Score=41.69 Aligned_cols=109 Identities=16% Similarity=0.166 Sum_probs=75.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 006396 239 IAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGL 318 (647)
Q Consensus 239 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 318 (647)
.+.+..+.-+...|+...|.++-++.. .|+...|...+.+++..++|++-.++-.. .-++.-|...+..+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~ 247 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEAC 247 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHH
Confidence 345566777777888888888877765 46888888888888888888876664332 12446677777777
Q ss_pred hhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 319 CEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYR 367 (647)
Q Consensus 319 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 367 (647)
...|...+|..+...+. +..-+..|.+.|++.+|.+.-.
T Consensus 248 ~~~~~~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 248 LKYGNKKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred HHCCCHHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHH
Confidence 77888777777765521 1344666777777777766543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=35.41 Aligned_cols=39 Identities=8% Similarity=0.012 Sum_probs=20.7
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAI 104 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 104 (647)
+|..++..+...|++++|+++|+++++..+. +...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence 4555555666666666666666666554332 34444433
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.082 Score=41.48 Aligned_cols=56 Identities=5% Similarity=-0.101 Sum_probs=34.1
Q ss_pred hcCChhHHHHHHHHHHhCCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCC
Q 006396 40 NLRHTDIMWDLYDDIKVSETP--RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFG 95 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 95 (647)
+.|+++.|...|+.+...-|. -...+...++.++.+.|++++|+..+++.++.+|.
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~ 79 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT 79 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 566777777777766653321 12334555666677777777777777776665544
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.084 Score=43.49 Aligned_cols=92 Identities=15% Similarity=-0.004 Sum_probs=57.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPT-----SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+-+.+.|++++|..-|..++.. .++. ...|..-..++.+.+.++.|+.-..+.++.+ +.....+..-+.+|.
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~-cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES-CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh-CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHH
Confidence 44455677777777777777763 1221 3344555566667777777777777777643 223334555566677
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
+...+++|+.-|+++++..
T Consensus 180 k~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESD 198 (271)
T ss_pred hhhhHHHHHHHHHHHHHhC
Confidence 7777777777777777765
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.6 Score=37.72 Aligned_cols=125 Identities=13% Similarity=0.056 Sum_probs=77.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCH-HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH-HHHHH--HHHHHhcCC
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSV-VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF-SYNIL--IHGLCIAGS 148 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--~~~~~~~~~ 148 (647)
+.+.|..++|+.-|......|...-+ -....+.......|+...|...|+++-.....|... -...| .-.+...|.
T Consensus 68 lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gs 147 (221)
T COG4649 68 LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGS 147 (221)
T ss_pred HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhcccc
Confidence 45677788888888887765543222 234455556677788888888888887664333322 11111 123456778
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
+++...-.+.+...+.+.....-..|.-+-.+.|++..|.+.|..+...
T Consensus 148 y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 148 YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 8877777777655544444455556666666777777777777776653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.33 Score=38.25 Aligned_cols=63 Identities=14% Similarity=0.011 Sum_probs=31.0
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCc--CHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGP--SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.+..-+...++.|++++|+..|+.+...-+.. ...+-..++.+|.+.|+++.|...+++.++.
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34444445555555555555555554432211 1224444555555555555555555555554
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.99 E-value=2.3 Score=43.81 Aligned_cols=139 Identities=12% Similarity=0.139 Sum_probs=67.6
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 006396 6 YSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 6 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
+.+.|++++|.+.|.+.+.. ...+......+ ...+.......++.+...+. .+...-..|+.+|.+.++.++-.+.
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~--le~s~Vi~kfL-daq~IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~ef 453 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF--LEPSEVIKKFL-DAQRIKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEF 453 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc--CChHHHHHHhc-CHHHHHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHH
Confidence 45566666666666666543 11112222222 33344444555555555444 4445556666666666666666555
Q ss_pred HHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
.+... .|.. ..-....+..+.+.+-.++|..+-.+... +......++. ..+++++|++.+..+
T Consensus 454 I~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 454 ISKCD-KGEW--FFDVETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL 516 (933)
T ss_pred HhcCC-Ccce--eeeHHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence 54433 1111 01133444555555555555544333221 2333333333 346667776666655
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.99 E-value=0.66 Score=37.52 Aligned_cols=130 Identities=12% Similarity=0.016 Sum_probs=92.9
Q ss_pred HHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcc-cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH---hHHHHHH
Q 006396 33 TYNSLLY--NLRHTDIMWDLYDDIKVSETPRNVY-TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV---SLNAIMS 106 (647)
Q Consensus 33 ~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~~~ 106 (647)
.|...|. +.+..++|+.-|..+...+....+. +.........+.|+...|...|+++-.-...|... .-..-.-
T Consensus 61 ~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~ 140 (221)
T COG4649 61 AFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAY 140 (221)
T ss_pred HHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHH
Confidence 3444444 7789999999999998866544443 34445667789999999999999987644444332 1222333
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 107 RYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 107 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.+...|.++......+.+...+.+-....-..|.-+-.+.|++.+|.++|..+...
T Consensus 141 lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 141 LLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 56688999999988888776553334445567777778999999999999999764
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.96 E-value=1.3 Score=40.70 Aligned_cols=123 Identities=12% Similarity=0.039 Sum_probs=61.7
Q ss_pred HhcCChhHHHHHHHHhhcCC--CCcCHH-----hHHHHHHHHHhcC-ChhhHHHHHHHHHhC----C----CCCCH----
Q 006396 74 CQQSRLQDAILFLQETAGKE--FGPSVV-----SLNAIMSRYCKLG-FAEVAKGLFCLMLKY----G----LHPDA---- 133 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~~g-~~~~a~~~~~~~~~~----~----~~~~~---- 133 (647)
.++|+.+.|..++.++.... ..|+.. .+..++......+ +++.|..++++..+. + ..|+.
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 45666666666666654422 112211 2344444444555 666666666555442 1 12222
Q ss_pred -HHHHHHHHHHHhcCCHH---HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 134 -FSYNILIHGLCIAGSME---EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 134 -~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.++..++.+|...+..+ +|..+++.+... .+-.+..+..-+.++.+.++.+.+.+.+.+|+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 23445555565555433 344455555433 2223444445555555566667777777777665
|
It is also involved in sporulation []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.18 Score=39.27 Aligned_cols=50 Identities=22% Similarity=0.247 Sum_probs=26.7
Q ss_pred CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 006396 514 LEPTSATYNILIDGLCVNGDLKNADCLLVSLQE-HNISLTKVAYTTIIKAH 563 (647)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~ 563 (647)
+.|+..+..+++.+|+..|++..|.++.+.+.+ -+++.+..+|..|++-+
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 445555555555555555555555555555554 23444455555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.35 Score=37.63 Aligned_cols=83 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI---------------GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
|..++..++.++++.|+.+....+++..-.- ...|+..++.+++.+|+..|++..|.++++...+
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~ 80 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR 80 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 4567778888888888888888888765421 1346777888888888888888888888888877
Q ss_pred -CCCCCCHHHHHHHHHHHh
Q 006396 512 -HNLEPTSATYNILIDGLC 529 (647)
Q Consensus 512 -~~~~p~~~~~~~l~~~~~ 529 (647)
.+++.+...|..|+.=..
T Consensus 81 ~Y~I~i~~~~W~~Ll~W~~ 99 (126)
T PF12921_consen 81 KYPIPIPKEFWRRLLEWAY 99 (126)
T ss_pred HcCCCCCHHHHHHHHHHHH
Confidence 566667788877775444
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=95.89 E-value=1.4 Score=40.50 Aligned_cols=96 Identities=16% Similarity=0.038 Sum_probs=54.9
Q ss_pred hHHHHHHHHHhcCChh---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAE---VAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
++..++.+|...+.++ +|..+++.+.... +..+.++..-+..+.+.++.+.+.+.+.+|... +......+...+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~l~ 163 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSILH 163 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHHHH
Confidence 5667777777766644 4555666664442 222445556667776778888888888888775 3323344554444
Q ss_pred HHHh--cCChhhHHHHHHHHHhc
Q 006396 177 GFHL--LSQISGAWKVIQKLLIK 197 (647)
Q Consensus 177 ~~~~--~~~~~~a~~~~~~~~~~ 197 (647)
.+.. ......+...+..+...
T Consensus 164 ~i~~l~~~~~~~a~~~ld~~l~~ 186 (278)
T PF08631_consen 164 HIKQLAEKSPELAAFCLDYLLLN 186 (278)
T ss_pred HHHHHHhhCcHHHHHHHHHHHHH
Confidence 4422 22234455555555444
|
It is also involved in sporulation []. |
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.81 E-value=2.6 Score=42.87 Aligned_cols=137 Identities=18% Similarity=0.125 Sum_probs=72.0
Q ss_pred CCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC--hhhHHHHHHHHHhcCCC
Q 006396 128 GLHPDAFSYN-----ILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ--ISGAWKVIQKLLIKGSD 200 (647)
Q Consensus 128 ~~~~~~~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~~~ 200 (647)
|++.+..-|. .++.-+...+.+..|.++...+...-... ...+.....-+.+..+ -+.+.+.+.+=.....
T Consensus 427 gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~- 504 (829)
T KOG2280|consen 427 GIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKL- 504 (829)
T ss_pred CccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcccC-
Confidence 4555544443 34555666788888888877774321111 4566666666665432 1222222222222111
Q ss_pred CCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC----cCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 006396 201 PDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFK----LNVIAYSVLLSSMCKSGRIDEALGLLYEMEA 266 (647)
Q Consensus 201 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 266 (647)
-+...|..+.+.....|+.+.|..+++.=...+.. .+..-+...+.-+...|+.+....++-.+..
T Consensus 505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 505 TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 24456777777777888888888877653332211 1222333444445555555555555555443
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.38 Score=47.03 Aligned_cols=98 Identities=13% Similarity=0.113 Sum_probs=42.3
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.+.|+.+.|.++.++ ..+...|..|.....+.|+++-|++.|++... |..|+-.|...|+.+.-.
T Consensus 329 l~lg~L~~A~~~a~~------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~ 393 (443)
T PF04053_consen 329 LQLGNLDIALEIAKE------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLS 393 (443)
T ss_dssp HHCT-HHHHHHHCCC------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHH
T ss_pred HhcCCHHHHHHHHHh------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHH
Confidence 344555555444321 22444555555555555555555555554321 223333444455555444
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFC 577 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 577 (647)
++.+.....| -++....++.-.|+.++..+++.
T Consensus 394 kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 394 KLAKIAEERG------DINIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp HHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHH
T ss_pred HHHHHHHHcc------CHHHHHHHHHHcCCHHHHHHHHH
Confidence 4444444433 12233333444455555444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.73 E-value=1.8 Score=40.43 Aligned_cols=106 Identities=19% Similarity=0.273 Sum_probs=57.1
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
+.+..+.-+...|+...|.++-.+.. -|+...|...+.+++..++|++...+... + -++.-|..++..|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence 34444555555666666665555443 45666666666666666666655543321 1 12244555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
+.|+..+|..++.++ ++ ..-+..|.++|++.+|.+.
T Consensus 249 ~~~~~~eA~~yI~k~-----~~-----~~rv~~y~~~~~~~~A~~~ 284 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI-----PD-----EERVEMYLKCGDYKEAAQE 284 (319)
T ss_pred HCCCHHHHHHHHHhC-----Ch-----HHHHHHHHHCCCHHHHHHH
Confidence 666666666655541 11 2334555666666666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.68 E-value=1.4 Score=40.40 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=99.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETK-AIGP---THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-----PDQITYN 487 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~ 487 (647)
..+..++.+..++.+++.+-+.-... |..| ......++..++...+.++++++.|+...+.... ....++.
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv 166 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCV 166 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhh
Confidence 33444444444455555444433321 2112 1123344666777778888888888887763211 1234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----CCCCCCHHH-----HHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCC-H
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWL----HNLEPTSAT-----YNILIDGLCVNGDLKNADCLLVSLQE----HNISLT-K 553 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~~~~-----~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~ 553 (647)
.+...|.+..|+++|.-+..++.+ .++..-... ...+.-++...|+..+|.+..++..+ .|-.+. .
T Consensus 167 ~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~a 246 (518)
T KOG1941|consen 167 SLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQA 246 (518)
T ss_pred hHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHH
Confidence 888888899999998887776654 122211222 23445567778888888887777654 332222 2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.....+++.|...|+.+.|..-|+.+..
T Consensus 247 rc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 247 RCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 2456777888889999998888887653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.93 Score=45.18 Aligned_cols=118 Identities=18% Similarity=0.137 Sum_probs=72.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhC--CC-CCCHHHHHHHHHHHhhcCChhh
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQITY-NTIIRSFCKCKDLRKAFQLLNQMWLH--NL-EPTSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~p~~~~~~~l~~~~~~~g~~~~ 536 (647)
..+.+.+.++++.+.+. -|+...| -.-.+.+...|++++|.+.|++.... .. ......+--++.++.-..+|++
T Consensus 246 ~~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~ 323 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEE 323 (468)
T ss_pred CCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHH
Confidence 44567777777777764 3444433 23344556678888888888865531 11 1134455566777788888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHH-HHHHhcCCH-------HHHHHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTII-KAHCAEGDV-------HKAMTFFCQMVE 581 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~g~~-------~~A~~~~~~~~~ 581 (647)
|...|.++.+.+ .-+..+|..+. -++...|+. ++|.++++++-.
T Consensus 324 A~~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 324 AAEYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 888888888753 33333443333 344556777 777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.59 Score=42.67 Aligned_cols=170 Identities=12% Similarity=0.075 Sum_probs=108.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC---CCCC--CHHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVI-GVTP---DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH---NLEP--TSAT 520 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p--~~~~ 520 (647)
.|..+.+++.+..++.+++.+-..-... |..| .......+..++...+.++++++.|+.+.+. .-.| ...+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 3444444444444555555544433321 2222 1234455777888888999999999998862 1122 3567
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc--CCCC-C------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEH--NISL-T------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY 591 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~-~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 591 (647)
+..|...|.+..|+++|.-+..++.+. .+.. | ......+.-++...|+.-+|.+..+++.+....
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~------ 238 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQ------ 238 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHH------
Confidence 889999999999999998888777642 1221 1 123445666788889999999988887764311
Q ss_pred hhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 592 TKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 592 ~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.|-.+ -......++++|...|+.|.|..-|+.+.
T Consensus 239 ----------~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 239 ----------HGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred ----------hCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 11111 24455678899999999999888777654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.87 Score=44.63 Aligned_cols=159 Identities=18% Similarity=0.174 Sum_probs=82.3
Q ss_pred HHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 71 DGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME 150 (647)
Q Consensus 71 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 150 (647)
....-.|+++++..+.+.-.-. +..+......+++.+.+.|-++.|+++-. |+. .-.....+.|+.+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll-~~i~~~~~~~i~~fL~~~G~~e~AL~~~~---------D~~---~rFeLAl~lg~L~ 335 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLL-PNIPKDQGQSIARFLEKKGYPELALQFVT---------DPD---HRFELALQLGNLD 335 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTG-GG--HHHHHHHHHHHHHTT-HHHHHHHSS----------HH---HHHHHHHHCT-HH
T ss_pred HHHHHcCChhhhhhhhhhhhhc-ccCChhHHHHHHHHHHHCCCHHHHHhhcC---------ChH---HHhHHHHhcCCHH
Confidence 3445566777765555411100 11123446666676777777777776632 222 1222334567777
Q ss_pred HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHH
Q 006396 151 EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVML 230 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 230 (647)
.|.++.++. .+...|..|.......|+++-|.+.|++... +..|+-.|...|+.+.-.++.+...
T Consensus 336 ~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~ 400 (443)
T PF04053_consen 336 IALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAE 400 (443)
T ss_dssp HHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHH
Confidence 776665433 3556777777777777777777777765432 4556666666777666666666655
Q ss_pred hCCCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 231 SQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYE 263 (647)
Q Consensus 231 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 263 (647)
..| -++....++.-.|+.++..+++.+
T Consensus 401 ~~~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 401 ERG------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp HTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred Hcc------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 543 134444555555666666655554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.99 Score=40.82 Aligned_cols=160 Identities=10% Similarity=-0.015 Sum_probs=112.1
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHH----HHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSY----NILIHGL 143 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~ 143 (647)
.-+..+...|+..+|-..++++++.. +.|...+...=.++.-.|+...-+..+++++..= .++...| ..+.-++
T Consensus 108 ~~aai~~~~g~~h~a~~~wdklL~d~-PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w-n~dlp~~sYv~GmyaFgL 185 (491)
T KOG2610|consen 108 AKAAILWGRGKHHEAAIEWDKLLDDY-PTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW-NADLPCYSYVHGMYAFGL 185 (491)
T ss_pred hhHHHhhccccccHHHHHHHHHHHhC-chhhhhhhhhhhHHHhccchhhhhhHHHHhcccc-CCCCcHHHHHHHHHHhhH
Confidence 33455677899999999999988764 3467778888888888999988888898887541 2333222 2333445
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC---CcchHHHHHHHHHhcCChH
Q 006396 144 CIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP---DIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~ 220 (647)
...|-+++|.+..++..+.+ +.|.....++..++...+++.++.++..+-...=-.. -..-|=...-.+...+.++
T Consensus 186 ~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye 264 (491)
T KOG2610|consen 186 EECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYE 264 (491)
T ss_pred HHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchh
Confidence 57899999999999988764 4567777888888888999999988877654321111 1222334445566778999
Q ss_pred HHHHHHHHHH
Q 006396 221 EGLKLREVML 230 (647)
Q Consensus 221 ~a~~~~~~~~ 230 (647)
.|+++|+.-.
T Consensus 265 ~aleIyD~ei 274 (491)
T KOG2610|consen 265 KALEIYDREI 274 (491)
T ss_pred HHHHHHHHHH
Confidence 9999987543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.89 Score=38.35 Aligned_cols=182 Identities=14% Similarity=0.023 Sum_probs=103.7
Q ss_pred HHHhcCChhhHHHHHHHHHhCCCC-cCHHHHHHHHH-hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 5 VYSRTGMVHDAVFVIAKMKELDLK-VSIQTYNSLLY-NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 5 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~ll~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
.|-..|-+.-|+--|.+.+...+. |++..+..+.- ..|++|.|.+.|+...+-+| ....+...-+-.+---|++.-|
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp-~y~Ya~lNRgi~~YY~gR~~LA 152 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDP-TYNYAHLNRGIALYYGGRYKLA 152 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCC-cchHHHhccceeeeecCchHhh
Confidence 455677788888889998887654 55555555444 88999999999999998555 3333333333345567899999
Q ss_pred HHHHHHhhcCCCC-cCHHhHHHHHHHHHhcCChhhHHHHH-HHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHH
Q 006396 83 ILFLQETAGKEFG-PSVVSLNAIMSRYCKLGFAEVAKGLF-CLMLKYGLHPDAFSYNILIHG-LCIAGSMEEALEFTNDM 159 (647)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~~~~~~ 159 (647)
.+-|...-+.++. |-...|..+.. +.-++.+|..-+ ++.. ..+..-|...|.. |...=..+ .+++++
T Consensus 153 q~d~~~fYQ~D~~DPfR~LWLYl~E---~k~dP~~A~tnL~qR~~----~~d~e~WG~~iV~~yLgkiS~e---~l~~~~ 222 (297)
T COG4785 153 QDDLLAFYQDDPNDPFRSLWLYLNE---QKLDPKQAKTNLKQRAE----KSDKEQWGWNIVEFYLGKISEE---TLMERL 222 (297)
T ss_pred HHHHHHHHhcCCCChHHHHHHHHHH---hhCCHHHHHHHHHHHHH----hccHhhhhHHHHHHHHhhccHH---HHHHHH
Confidence 9888887765433 11223332222 234666776544 3333 2344445444433 32222222 233333
Q ss_pred hhCCC------CCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 160 GRHGV------EPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 160 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
..... +.-.+||.-+...+...|+.++|..+|+-.+..
T Consensus 223 ~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 223 KADATDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred HhhccchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 22110 011345555666666667777776666666544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.11 Score=42.90 Aligned_cols=112 Identities=11% Similarity=0.021 Sum_probs=73.9
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHH------hcCChhHHHHHHHHHHhCCCCCC--cccHHHHHHHHHhcCChhHHHHH
Q 006396 14 DAVFVIAKMKELDLKVSIQTYNSLLY------NLRHTDIMWDLYDDIKVSETPRN--VYTNSIVIDGLCQQSRLQDAILF 85 (647)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~ll~------~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~ 85 (647)
+.....+.+...+. -..+.....+. .+++++.|..-++..+......+ .-+-..|.+.....|.+++|...
T Consensus 70 ~~~~~~ekf~~~n~-~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~ 148 (207)
T COG2976 70 KSIAAAEKFVQANG-KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKT 148 (207)
T ss_pred hhHHHHHHHHhhcc-ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 55555666665421 12232222222 78899999999888774222111 22345577888899999999999
Q ss_pred HHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCC
Q 006396 86 LQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYG 128 (647)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~ 128 (647)
++.....++ .......-..++...|+-++|+..|++.++.+
T Consensus 149 L~t~~~~~w--~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 149 LDTIKEESW--AAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhccccccH--HHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 987765432 22335556678889999999999999998874
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.04 Score=31.06 Aligned_cols=32 Identities=16% Similarity=0.063 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+..|..++.++...|++++|++.++++++..|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 35788999999999999999999999998664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.046 Score=30.82 Aligned_cols=32 Identities=19% Similarity=0.101 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+.+|..++.++...|++++|+..++++++.+|
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 35789999999999999999999999999664
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.26 E-value=1.9 Score=37.81 Aligned_cols=60 Identities=17% Similarity=0.042 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.+++-|.+.|.+..|..-++++++.- .- -+-..+.+..+..+|.+.|-.++|...-+-+-
T Consensus 172 ~IaryY~kr~~~~AA~nR~~~v~e~y-~~-----------------t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 172 AIARYYLKRGAYVAAINRFEEVLENY-PD-----------------TSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcc-cc-----------------ccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 45566777788888887777777653 00 02224566667777777887777776654433
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.4 Score=36.63 Aligned_cols=26 Identities=12% Similarity=-0.052 Sum_probs=14.4
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
.-++++...|+.++|+.-|+++++.+
T Consensus 164 lrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 164 LRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred HhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 34455555555555555555555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.14 E-value=4.4 Score=41.32 Aligned_cols=108 Identities=15% Similarity=0.197 Sum_probs=72.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
+.+--+.-+...|+..+|.++-.+.. -||-..|..-+.+++..++|++-+++-+... .+.-|.....+|.
T Consensus 686 Sl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~ 755 (829)
T KOG2280|consen 686 SLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACL 755 (829)
T ss_pred cHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHH
Confidence 34444555666788888887776653 4677777777788888888877666554432 2445666778888
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (647)
+.|+.++|.+++-++-. .. ..+.+|.+.|++.+|.+..
T Consensus 756 ~~~n~~EA~KYiprv~~-------------------------l~----ekv~ay~~~~~~~eAad~A 793 (829)
T KOG2280|consen 756 KQGNKDEAKKYIPRVGG-------------------------LQ----EKVKAYLRVGDVKEAADLA 793 (829)
T ss_pred hcccHHHHhhhhhccCC-------------------------hH----HHHHHHHHhccHHHHHHHH
Confidence 88888888888766521 11 4566777777777776553
|
|
| >KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.4 Score=39.91 Aligned_cols=100 Identities=9% Similarity=0.045 Sum_probs=65.6
Q ss_pred CCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh--cCChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 480 TPDQITY-NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV--NGDLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 480 ~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
.++..++ +.++..+.+.|-..+|...+..+... .+|+...|..+++.=.. +-+...+..+|+.|... +..++..|
T Consensus 456 ~~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~l-pp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~-fg~d~~lw 533 (568)
T KOG2396|consen 456 GADSVTLKSKYLDWAYESGGYKKARKVYKSLQEL-PPFSLDLFRKMIQFEKEQESCNLANIREYYDRALRE-FGADSDLW 533 (568)
T ss_pred CCceeehhHHHHHHHHHhcchHHHHHHHHHHHhC-CCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHH-hCCChHHH
Confidence 4444443 55667777788888888888888774 24466777666644221 12377778888888753 23667777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.....--...|..+.+-.++-++.+
T Consensus 534 ~~y~~~e~~~g~~en~~~~~~ra~k 558 (568)
T KOG2396|consen 534 MDYMKEELPLGRPENCGQIYWRAMK 558 (568)
T ss_pred HHHHHhhccCCCcccccHHHHHHHH
Confidence 7776666677877777777766654
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.022 Score=32.15 Aligned_cols=32 Identities=16% Similarity=0.141 Sum_probs=19.6
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHH
Q 006396 51 YDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAI 83 (647)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 83 (647)
|+++++..| .++.+|+.++..+...|++++|+
T Consensus 2 y~kAie~~P-~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELNP-NNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHCC-CCHHHHHHHHHHHHHCcCHHhhc
Confidence 444555443 66666666777676777666664
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.066 Score=30.68 Aligned_cols=27 Identities=15% Similarity=0.154 Sum_probs=23.3
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
+|..|+.+|.+.|++++|++++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 477899999999999999999999664
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.71 E-value=1.8 Score=34.77 Aligned_cols=84 Identities=14% Similarity=0.079 Sum_probs=38.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
.++..+...+.+.....+++.+...+ +.+....+.++..|++.+ ..+....++. .++.......+..|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 34444444455555555555555544 244445555555555432 2233333331 011122223445555555
Q ss_pred ChhhHHHHHHHH
Q 006396 533 DLKNADCLLVSL 544 (647)
Q Consensus 533 ~~~~A~~~~~~~ 544 (647)
-++++.-++.++
T Consensus 84 l~~~~~~l~~k~ 95 (140)
T smart00299 84 LYEEAVELYKKD 95 (140)
T ss_pred cHHHHHHHHHhh
Confidence 555555555554
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.59 E-value=3.2 Score=37.08 Aligned_cols=223 Identities=17% Similarity=0.107 Sum_probs=154.8
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCccchHHHHHHHHhcCCHHHHH
Q 006396 321 KEMITEARMYFDSLIMSNCI-QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISPSIVTFNSLIYGFCKNGKVADAR 398 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 398 (647)
.+....+...+......... ............+...+.+..+...+...... ........+......+...++...+.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 35555666666666554322 13567777788888999999999998887752 23335556666777777888899999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 399 RLLDTIKLHGLEPSAVTYTTFMN-AYCEEGNIQRLLALLQEMETKAI--GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
..+.........+ ......... .+...|+++.+...+........ ......+......+...++.+.+...+....
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 194 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKAL 194 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHH
Confidence 9999888754333 122222333 78899999999999999865321 1233344444445667889999999999998
Q ss_pred HcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 476 VIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 476 ~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
... +. ....+..+...+...++++.|...+..... ..|+ ...+..+...+...+..+.+...+.+....
T Consensus 195 ~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 195 KLN-PDDDAEALLNLGLLYLKLGKYEEALEYYEKALE--LDPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred hhC-cccchHHHHHhhHHHHHcccHHHHHHHHHHHHh--hCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 863 33 467788888889999999999999999988 3444 444455555555666788888888887764
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.56 E-value=1.6 Score=33.54 Aligned_cols=137 Identities=18% Similarity=0.262 Sum_probs=75.0
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
-.|..++..++..+.... .+..-++-+|--....-+-+-..++++.+-+. -|. ..+|++.+...
T Consensus 14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDi----------s~C~NlKrVi~ 77 (161)
T PF09205_consen 14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDI----------SKCGNLKRVIE 77 (161)
T ss_dssp HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-G----------GG-S-THHHHH
T ss_pred HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------hhhcchHHHHH
Confidence 346666666666665543 23334444443333333333344444433221 111 23455555554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+-.+ ..+...+..-+..+..+|+-++-.+++..+.+.+ .+++.....++.+|.+.|+..++-++++++.+.|
T Consensus 78 C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 44432 2345556666778888888888888888887643 6788888888999999999999999999988887
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.52 Score=39.08 Aligned_cols=92 Identities=15% Similarity=-0.026 Sum_probs=68.8
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCH----HhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSV----VSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
++-+++.|++++|..-|..++..-++... ..|..-+.++.+.+.++.|+.-..+.++.+ +....+...-..+|.+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek 180 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEK 180 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHh
Confidence 55678899999999999998875433222 246666778888999999998888888875 3344455555667888
Q ss_pred cCCHHHHHHHHHHHhhC
Q 006396 146 AGSMEEALEFTNDMGRH 162 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~ 162 (647)
...+++|++-|..+.+.
T Consensus 181 ~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 181 MEKYEEALEDYKKILES 197 (271)
T ss_pred hhhHHHHHHHHHHHHHh
Confidence 88889999888888775
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.40 E-value=2.2 Score=34.51 Aligned_cols=72 Identities=11% Similarity=-0.229 Sum_probs=38.1
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
+..-...++.+++..++..+.-..|. ....-..-...+..+|++.+|..+|+.+... .|....-..|+..|.
T Consensus 17 ~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~--~~~~p~~kALlA~CL 88 (160)
T PF09613_consen 17 LSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER--APGFPYAKALLALCL 88 (160)
T ss_pred HHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc--CCCChHHHHHHHHHH
Confidence 34445666677777776666553322 2223333444466677777777777776654 233333334444443
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.36 E-value=0.13 Score=46.32 Aligned_cols=92 Identities=11% Similarity=-0.017 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG 567 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 567 (647)
-.+-|.+.|.+++|+.+|...+. ..| |+.++..-..+|.+..++..|+.-...++..+ ..-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHh
Confidence 35567778888888888887776 455 77777777778888888887777777766532 122335555555555666
Q ss_pred CHHHHHHHHHHHHHcC
Q 006396 568 DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 568 ~~~~A~~~~~~~~~~~ 583 (647)
...+|.+-++.+++..
T Consensus 180 ~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALE 195 (536)
T ss_pred hHHHHHHhHHHHHhhC
Confidence 7777777777776654
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.3 Score=34.36 Aligned_cols=51 Identities=27% Similarity=0.174 Sum_probs=27.9
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
.+.++.+++..++..+.- +.|. ...-..-...+...|+|.+|.++++++.+
T Consensus 21 l~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred HccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 345566666666666655 4443 22222233445566666666666666654
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=94.26 E-value=5.4 Score=38.36 Aligned_cols=123 Identities=11% Similarity=0.010 Sum_probs=77.1
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhh
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL---TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTK 593 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ 593 (647)
...+|..++..+.+.|.++.|...+.++...+... .+.+...-++.+...|+..+|+..++..+.............
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~ 224 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISN 224 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccH
Confidence 46788888999999999999999999988743222 345566667788888999999999988877322211000000
Q ss_pred HHHHh------h-------hhCCCCCCHHHHHHHHHHHHcC------CCHHHHHHHHHHHHhCCC
Q 006396 594 SFFCM------M-------LSNGFPPDQEICEVMLIAFHQG------GDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 594 ~~~~~------~-------~~~~~~~~~~~~~~l~~~~~~~------g~~~~A~~~~~~~~~~~~ 639 (647)
..... . .......-..++..++.-.... ++.+++...++.+.+..+
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 289 (352)
T PF02259_consen 225 AELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDP 289 (352)
T ss_pred HHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhCh
Confidence 00000 0 0000011145566666666666 788888888888887543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=94.21 E-value=0.12 Score=29.56 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
+|..++.+|.+.|++++|+.++++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 467788888899999999999988653
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.73 Score=41.38 Aligned_cols=62 Identities=19% Similarity=0.217 Sum_probs=40.3
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.++..++..+...|+.+.+...++++.+.. +-+...|..++.+|...|+...|+..|+.+.+
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 444556666666677777777777776642 44555677777777777777777777766654
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.12 E-value=8 Score=39.78 Aligned_cols=276 Identities=13% Similarity=0.024 Sum_probs=165.6
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHH-----HhcCCHHHHHHHHHHHHH-------CCCCCCccchHHHHHHHHhc
Q 006396 324 ITEARMYFDSLIMSNCIQDVVLYNIMIDGY-----VKLGNIGEAVQLYRQLIE-------KRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 324 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~ 391 (647)
...+.++++...+.+ +......+..+| ....+.+.|+.+++...+ .+ .+.....+..+|.+.
T Consensus 228 ~~~a~~~~~~~a~~g---~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g 301 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLG---HSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG 301 (552)
T ss_pred hhHHHHHHHHHHhhc---chHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence 567888888888776 333333333332 345689999999998876 44 344666777777764
Q ss_pred C-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hc
Q 006396 392 G-----KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE-EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC----KQ 461 (647)
Q Consensus 392 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~ 461 (647)
. +.+.|..++......| .|+.......+..... ..+...|...|......|.. ..+..+..+|. -.
T Consensus 302 ~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~gv~ 377 (552)
T KOG1550|consen 302 LGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLGVE 377 (552)
T ss_pred CCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCCcC
Confidence 3 6677889888888876 4554444333332222 24678899999998888742 22223333322 23
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH---hh----cCCh
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL---CV----NGDL 534 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~~ 534 (647)
.+.+.|..++.+..+.| .|...-....+..+.. +.++.+.-.+..+.+.+.+.....-..+.... .. ..+.
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~~ 455 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVISTL 455 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccch
Confidence 47888999999888887 4443333333444444 77777777776666654322111111111111 11 1244
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAE----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
..+...+.+....| +......+...|..- .+++.|...|..+... . ...
T Consensus 456 ~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~-----------------------~-~~~ 508 (552)
T KOG1550|consen 456 ERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ-----------------------G-AQA 508 (552)
T ss_pred hHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh-----------------------h-hHH
Confidence 55666666665433 666777777766654 2577777777777653 2 566
Q ss_pred HHHHHHHHHcC-C--CHHHHHHHHHHHHhCC
Q 006396 611 CEVMLIAFHQG-G--DLGSVFELAAVMIKSG 638 (647)
Q Consensus 611 ~~~l~~~~~~~-g--~~~~A~~~~~~~~~~~ 638 (647)
...++..+-.. | .+..|.+++..+.+.+
T Consensus 509 ~~nlg~~~e~g~g~~~~~~a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 509 LFNLGYMHEHGEGIKVLHLAKRYYDQASEED 539 (552)
T ss_pred HhhhhhHHhcCcCcchhHHHHHHHHHHHhcC
Confidence 66677666553 2 2688888888877654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.82 E-value=2.9 Score=33.61 Aligned_cols=85 Identities=19% Similarity=0.148 Sum_probs=41.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ 461 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (647)
..++..+...+.......+++.+...+ ..+....+.++..|++.+ ..+....++. . .+......+++.|.+.
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHc
Confidence 345555555556666666666655544 244555566666665442 2333333331 1 1222233345555555
Q ss_pred CCHHHHHHHHHHH
Q 006396 462 WKLQEAVQLLEDM 474 (647)
Q Consensus 462 g~~~~a~~~~~~~ 474 (647)
+.++++..++.++
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.74 E-value=5.6 Score=36.71 Aligned_cols=26 Identities=19% Similarity=0.356 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLL 245 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~ 245 (647)
..+.++++.+.+.|+++....|..+.
T Consensus 199 ~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 199 ARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred HHHHHHHHHHHHcCCccccccccHHH
Confidence 35555666666666555555444433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.73 E-value=1.1 Score=37.55 Aligned_cols=60 Identities=15% Similarity=0.190 Sum_probs=26.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+..+...|.+.|+.+.|.+.+.++.+....+. ..++-.+++.....|++..+...+.++.
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~ 100 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE 100 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34444444445555555555444444322221 3333444444444444444444444443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=93.50 E-value=1.3 Score=37.23 Aligned_cols=97 Identities=12% Similarity=-0.019 Sum_probs=65.4
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC-CHHHHHH--
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHP-DAFSYNI-- 138 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~-- 138 (647)
.++..++..|.+.|+.++|.+.|.++.+....+. ...+..+++...-.+++..+.....++...--.+ +...-+.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 4677888999999999999999999877544333 3467888888889999998888887776542121 1211111
Q ss_pred HHH--HHHhcCCHHHHHHHHHHHh
Q 006396 139 LIH--GLCIAGSMEEALEFTNDMG 160 (647)
Q Consensus 139 l~~--~~~~~~~~~~a~~~~~~~~ 160 (647)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 1234678888877776653
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=93.47 E-value=2.8 Score=32.34 Aligned_cols=140 Identities=13% Similarity=0.113 Sum_probs=79.4
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.-.|..++..+++.+..... +..-+|-++--....-+-+-..+.++.+=+ -.| ...+|+.....
T Consensus 13 ildG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFD----------is~C~NlKrVi 76 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFD----------ISKCGNLKRVI 76 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-----------GGG-S-THHHH
T ss_pred HHhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcC----------chhhcchHHHH
Confidence 34577777777777776532 333344444333333344444444444332 111 11233333333
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
..+-.+ ..+...+...+......|+.+.-.+++..+.+.+ .++++....++.+|
T Consensus 77 ~C~~~~-----n~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~---------------------~~~p~~L~kia~Ay 130 (161)
T PF09205_consen 77 ECYAKR-----NKLSEYVDLALDILVKQGKKDQLDKIYNELKKNE---------------------EINPEFLVKIANAY 130 (161)
T ss_dssp HHHHHT-----T---HHHHHHHHHHHHTT-HHHHHHHHHHH--------------------------S-HHHHHHHHHHH
T ss_pred HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc---------------------CCCHHHHHHHHHHH
Confidence 333222 2234556667788888999999989998887655 78899999999999
Q ss_pred HcCCCHHHHHHHHHHHHhCCCC
Q 006396 619 HQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|+..+|.++++++.+.|.+
T Consensus 131 ~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 131 KKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHhcchhhHHHHHHHHHHhchH
Confidence 9999999999999999998863
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=93.28 E-value=3.8 Score=44.19 Aligned_cols=159 Identities=18% Similarity=0.134 Sum_probs=91.0
Q ss_pred cCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 76 QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
.+++++|+..+..+-. ..|.-....-.+.|-+.+|+.++.-=.+ .....|.+....+.....+++|.-.
T Consensus 893 L~ry~~AL~hLs~~~~-------~~~~e~~n~I~kh~Ly~~aL~ly~~~~e----~~k~i~~~ya~hL~~~~~~~~Aal~ 961 (1265)
T KOG1920|consen 893 LKRYEDALSHLSECGE-------TYFPECKNYIKKHGLYDEALALYKPDSE----KQKVIYEAYADHLREELMSDEAALM 961 (1265)
T ss_pred HHHHHHHHHHHHHcCc-------cccHHHHHHHHhcccchhhhheeccCHH----HHHHHHHHHHHHHHHhccccHHHHH
Confidence 4566777666655431 1233344444566777777766532111 1122344445555566777777777
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc--hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV--TYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
|+..-+ ...-+.+|..+|++.+|+.+..++... .+.. +-..|+.-+...+++-+|-++..+..+.
T Consensus 962 Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd- 1028 (1265)
T KOG1920|consen 962 YERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD- 1028 (1265)
T ss_pred HHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC-
Confidence 766522 123456677788888888877776432 1211 1245666677778888887777777654
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
....+..+++...+++|.++-....
T Consensus 1029 -------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1029 -------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred -------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 1223445556666777776665543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.18 E-value=8.4 Score=37.04 Aligned_cols=66 Identities=17% Similarity=0.119 Sum_probs=43.2
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
....+|..++..+.+.|.++.|...+..+...+... .+.+...-+..+...|+..+|...++...+
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344567777777778888888888777776632111 344444555666677777777777776665
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.17 E-value=2.1 Score=36.89 Aligned_cols=82 Identities=10% Similarity=-0.049 Sum_probs=46.0
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTS-ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~ 573 (647)
...++.|...+.+.+. +.|+. .-|..-+.++.+..+++.+..--.++++ +.||.. ....+..+......+++|+
T Consensus 23 ~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrralq--l~~N~vk~h~flg~~~l~s~~~~eaI 98 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRALQ--LDPNLVKAHYFLGQWLLQSKGYDEAI 98 (284)
T ss_pred hhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHh--cChHHHHHHHHHHHHHHhhccccHHH
Confidence 3445556665555555 44543 3344555556666666666666666655 344443 4445555566666666666
Q ss_pred HHHHHHHH
Q 006396 574 TFFCQMVE 581 (647)
Q Consensus 574 ~~~~~~~~ 581 (647)
..+.++..
T Consensus 99 ~~Lqra~s 106 (284)
T KOG4642|consen 99 KVLQRAYS 106 (284)
T ss_pred HHHHHHHH
Confidence 66666643
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.33 Score=27.16 Aligned_cols=30 Identities=20% Similarity=0.276 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|..++.++...|++++|++.++++++..
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 457778888888888888888888888765
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=93.04 E-value=4.3 Score=33.34 Aligned_cols=28 Identities=18% Similarity=0.234 Sum_probs=12.9
Q ss_pred HHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 124 MLKYGLHPDAFSYNILIHGLCIAGSMEE 151 (647)
Q Consensus 124 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (647)
+.+.+++|+...+..++..+.+.|++..
T Consensus 20 l~~~~i~~~~~L~~lli~lLi~~~~~~~ 47 (167)
T PF07035_consen 20 LNQHNIPVQHELYELLIDLLIRNGQFSQ 47 (167)
T ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHH
Confidence 3334444444444445555544444433
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.84 Score=41.01 Aligned_cols=70 Identities=19% Similarity=0.229 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
..++..++..+...|+.+.+...++++.... |-+...|..+..+|.+.|+...|+..|+
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d---------------------p~~E~~~~~lm~~y~~~g~~~~ai~~y~ 211 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELD---------------------PYDEPAYLRLMEAYLVNGRQSAAIRAYR 211 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC---------------------ccchHHHHHHHHHHHHcCCchHHHHHHH
Confidence 3477888999999999999999999999988 8899999999999999999999999999
Q ss_pred HHHh-----CCCCCCC
Q 006396 633 VMIK-----SGLLPDK 643 (647)
Q Consensus 633 ~~~~-----~~~~~~~ 643 (647)
++.+ .|+.|-.
T Consensus 212 ~l~~~~~edlgi~P~~ 227 (280)
T COG3629 212 QLKKTLAEELGIDPAP 227 (280)
T ss_pred HHHHHhhhhcCCCccH
Confidence 8764 5666543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=92.73 E-value=0.73 Score=40.54 Aligned_cols=34 Identities=26% Similarity=0.332 Sum_probs=24.6
Q ss_pred hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCC
Q 006396 255 DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDK 288 (647)
Q Consensus 255 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 288 (647)
+-++.++++|...|+.||..+-..++.++.+.+.
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~ 173 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF 173 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence 3467777777777777777777777777776665
|
|
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=92.56 E-value=0.75 Score=41.65 Aligned_cols=92 Identities=12% Similarity=-0.083 Sum_probs=66.5
Q ss_pred HHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 69 VIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS 148 (647)
Q Consensus 69 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 148 (647)
-++-|+++|.+++|++.|.+.....+ .++.++..-+.+|.+...+..|..-...++..+ ..-..+|..-+.+-...|.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia~~P-~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd-~~Y~KAYSRR~~AR~~Lg~ 180 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIAVYP-HNPVYHINRALAYLKQKSFAQAEEDCEAAIALD-KLYVKAYSRRMQARESLGN 180 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhccCC-CCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh-HHHHHHHHHHHHHHHHHhh
Confidence 46678999999999999999887542 377888888899999999988887777776543 2223345555555555566
Q ss_pred HHHHHHHHHHHhhC
Q 006396 149 MEEALEFTNDMGRH 162 (647)
Q Consensus 149 ~~~a~~~~~~~~~~ 162 (647)
..+|.+-++..++.
T Consensus 181 ~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 181 NMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHhHHHHHhh
Confidence 77777777777664
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.16 Score=28.17 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.6
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++..++.++.+.|++++|.+.++++++.-|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 567889999999999999999999998654
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=92.42 E-value=0.22 Score=27.92 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.+|..++..|...|++++|.+.++++++.++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4788999999999999999999999998553
|
... |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=92.29 E-value=4 Score=32.47 Aligned_cols=53 Identities=11% Similarity=-0.171 Sum_probs=29.3
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
...++.+++..+++.+.-..|. ....-..-...+..+|++.+|.++|+.+...
T Consensus 21 L~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~ 73 (153)
T TIGR02561 21 LRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSS 73 (153)
T ss_pred HhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhcc
Confidence 3466666666666666543222 1222223334456667777777777776655
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=92.10 E-value=0.39 Score=26.91 Aligned_cols=26 Identities=23% Similarity=0.110 Sum_probs=10.7
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
|..++.+|...|++++|+..|+++++
T Consensus 4 ~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 4 YYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 33444444444444444444444443
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.92 E-value=2.3 Score=37.64 Aligned_cols=49 Identities=18% Similarity=0.208 Sum_probs=33.2
Q ss_pred CccchHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCK-----NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE 425 (647)
Q Consensus 377 ~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (647)
|-.+|...+..|.. .+.++-....++.|.+.|+.-|..+|+.|++.+-+
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPK 119 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPK 119 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcc
Confidence 44556555655543 35566666677778888888888888888877543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.59 E-value=4 Score=40.39 Aligned_cols=102 Identities=14% Similarity=0.072 Sum_probs=61.2
Q ss_pred HHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEE 151 (647)
Q Consensus 72 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 151 (647)
...+.|+++.|.++..+.. +..-|..+..+....|++..|.+.|.+... |..|+-.+...|+.+.
T Consensus 646 lal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~ 710 (794)
T KOG0276|consen 646 LALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEG 710 (794)
T ss_pred hhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhH
Confidence 3556777777777665543 344577777777777777777777765542 3445555555666665
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKL 194 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (647)
...+-....+.|. .| .-.-+|...|+++++.+++.+-
T Consensus 711 l~~la~~~~~~g~-~N-----~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 711 LAVLASLAKKQGK-NN-----LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcc-cc-----hHHHHHHHcCCHHHHHHHHHhc
Confidence 5555555555442 12 2233455667777777666554
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=91.40 E-value=4.9 Score=36.31 Aligned_cols=105 Identities=13% Similarity=0.179 Sum_probs=72.8
Q ss_pred CCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH
Q 006396 372 KRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG---LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH 448 (647)
Q Consensus 372 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 448 (647)
.|.+....+....+..-....+++.++.++-++.... ..|+.. -.+.++.+ -.-++++++.++..=.+.|+-||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccch
Confidence 3455566667777777777788888888887776431 111111 12222322 334677888888888888999999
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIG 478 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 478 (647)
.+++.+++.+.+.+++.+|.++...|....
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999999888887776543
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.30 E-value=38 Score=40.34 Aligned_cols=316 Identities=12% Similarity=0.059 Sum_probs=165.3
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCC-CCcccHHHHH-HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh
Q 006396 278 ILIRGLCKQDKVHKAIQLYNEMCSKRIS-PNSFAHGAIL-LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK 355 (647)
Q Consensus 278 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 355 (647)
.+..+-.+.+.+..|+..++.-.....+ .....+..++ ..|...++++...-+...... ++..+. -+.....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~sl~~-qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPSLYQ-QILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----CccHHH-HHHHHHh
Confidence 4455666778888888888874111000 0112222333 377777887777665553211 222333 3445567
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHHcCCHHHHHH
Q 006396 356 LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT-FMNAYCEEGNIQRLLA 434 (647)
Q Consensus 356 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 434 (647)
.|+++.|...|+.+.+.+++ ...+++.++......+.++......+...... .+....++. =+.+-.+.++++....
T Consensus 1462 ~g~~~da~~Cye~~~q~~p~-~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDPD-KEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCCCc-cccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 89999999999999887432 46677777777777888888777666555431 233333332 2334456667776665
Q ss_pred HHHHHHhCCCCCCHHHHHH--HHHHHHhc--CCHHHHHHHHHHHHHcCCCC--------C-HHHHHHHHHHHHhcCCHHH
Q 006396 435 LLQEMETKAIGPTHVTYTV--VIKGLCKQ--WKLQEAVQLLEDMYVIGVTP--------D-QITYNTIIRSFCKCKDLRK 501 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~--g~~~~a~~~~~~~~~~~~~~--------~-~~~~~~l~~~~~~~~~~~~ 501 (647)
.+. .. +..+|.. ++....+. .+.-.-.+.++.+.+.-+.| + ...|..++....-. +
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~----e 1608 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL----E 1608 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH----H
Confidence 554 11 1222222 22222221 11111112333333211111 0 11222222221111 1
Q ss_pred HHHHHHHHHhCCCCCC------HHHHHHHHHHHhhcCChhhHHHHHHHHH-Hc----CCCC-CHHHHHHHHHHHHhcCCH
Q 006396 502 AFQLLNQMWLHNLEPT------SATYNILIDGLCVNGDLKNADCLLVSLQ-EH----NISL-TKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 502 A~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~~~-~~~~~~~l~~~~~~~g~~ 569 (647)
-....+... +..++ ...|..-+..-....+..+-+--+++.. .. ++.. -..+|...++.....|.+
T Consensus 1609 l~~~~~~l~--~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1609 LENSIEELK--KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred HHHHHHHhh--ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence 111111111 12222 2333333322222222222222222222 21 1111 245899999999999999
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.|...+-.+.+.+ -+.++...++.+...|+...|..+++..+..
T Consensus 1687 q~A~nall~A~e~r-----------------------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR-----------------------LPEIVLERAKLLWQTGDELNALSVLQEILSK 1731 (2382)
T ss_pred HHHHHHHHhhhhcc-----------------------cchHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 99999888887654 3567888899999999999999999998865
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.64 E-value=23 Score=36.58 Aligned_cols=277 Identities=16% Similarity=0.069 Sum_probs=166.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCcccHHH--HHHH-HhhcCCHHHHHHHHHHHHH-------cCCCCcHHHHHHHHHHHHhcC
Q 006396 288 KVHKAIQLYNEMCSKRISPNSFAHGA--ILLG-LCEKEMITEARMYFDSLIM-------SNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 288 ~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~-~~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~ 357 (647)
....+.+.++.....|.. ....... ...+ +....+.+.|..+++.... .+ .+.....+..+|.+..
T Consensus 227 ~~~~a~~~~~~~a~~g~~-~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~ 302 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGHS-EAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGL 302 (552)
T ss_pred hhhHHHHHHHHHHhhcch-HHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCC
Confidence 356788899988887622 2222222 2223 4467799999999998876 33 3445667777887743
Q ss_pred -----CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhc---CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----H
Q 006396 358 -----NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKN---GKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC----E 425 (647)
Q Consensus 358 -----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~ 425 (647)
+...|..++.+..+.|.+ +. ...+...+... .+...|.++|......|.. .. +-.+..+|. -
T Consensus 303 ~~~~~d~~~A~~~~~~aA~~g~~-~a--~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A--~~~la~~y~~G~gv 376 (552)
T KOG1550|consen 303 GVEKIDYEKALKLYTKAAELGNP-DA--QYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LA--IYRLALCYELGLGV 376 (552)
T ss_pred CCccccHHHHHHHHHHHHhcCCc-hH--HHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HH--HHHHHHHHHhCCCc
Confidence 567799999998887644 33 23334444332 4678999999999988732 22 222222222 2
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---Hh----cCC
Q 006396 426 EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSF---CK----CKD 498 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~~----~~~ 498 (647)
..+...|...++..-+.| .|...--...+..+.. +.+..+.-.+..+.+.|.+.....-..++... .. ..+
T Consensus 377 ~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 377 ERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhhhHHhhHHHHHHHhccccccccccccc
Confidence 357889999999999887 3433322233333444 77788877777777766432222111111111 11 225
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-C--CHHH
Q 006396 499 LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN----GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE-G--DVHK 571 (647)
Q Consensus 499 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g--~~~~ 571 (647)
...+...+.+....| +......+.+.|..- .+++.|...+......+ ......+...+..- | ....
T Consensus 455 ~~~~~~~~~~a~~~g---~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~----~~~~~nlg~~~e~g~g~~~~~~ 527 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQG---NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG----AQALFNLGYMHEHGEGIKVLHL 527 (552)
T ss_pred hhHHHHHHHHHHhcc---CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh----hHHHhhhhhHHhcCcCcchhHH
Confidence 666777777776544 566666777776643 35888888888888754 44444444433321 1 2567
Q ss_pred HHHHHHHHHHcC
Q 006396 572 AMTFFCQMVEKG 583 (647)
Q Consensus 572 A~~~~~~~~~~~ 583 (647)
|.+++..+...+
T Consensus 528 a~~~~~~~~~~~ 539 (552)
T KOG1550|consen 528 AKRYYDQASEED 539 (552)
T ss_pred HHHHHHHHHhcC
Confidence 777777776544
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=90.64 E-value=7.4 Score=31.00 Aligned_cols=53 Identities=11% Similarity=-0.031 Sum_probs=35.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE 93 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 93 (647)
...+++++..+++-+..-.| ..+..-..-+..+...|++.+|..+|+...+.+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP-~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRP-NLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCC-CccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 56677888888877765444 333333444556677888888888888887643
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=90.61 E-value=8.6 Score=31.68 Aligned_cols=135 Identities=16% Similarity=0.180 Sum_probs=84.6
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
.+.+..+.+.+++|+...+..++..+.+.|++.....++ ..++-+|.......+-.+. +....+.++--.|.++
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----QYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----hhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 355666677788899999999999999999876655444 4455556554443332222 2334455554444443
Q ss_pred CCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 006396 233 GFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCS 301 (647)
Q Consensus 233 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 301 (647)
=...+..+++.+...|++-+|.+..+..... +......++.+..+.++...-..+++-...
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1124567778888999999998888775332 223335566777777776655555555544
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=90.61 E-value=25 Score=36.95 Aligned_cols=193 Identities=11% Similarity=0.084 Sum_probs=93.3
Q ss_pred CHHHHHHHHHhcCChhHHHHHHHHHH-hCCCCCCc--ccHHHHHHHHH-hcCChhHHHHHHHHhhcCCCCcCHH-----h
Q 006396 30 SIQTYNSLLYNLRHTDIMWDLYDDIK-VSETPRNV--YTNSIVIDGLC-QQSRLQDAILFLQETAGKEFGPSVV-----S 100 (647)
Q Consensus 30 ~~~~~~~ll~~~~~~~~a~~~~~~~~-~~~~~~~~--~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~~~~~~~~-----~ 100 (647)
+...|..+| ..|+..++.+. ...++|.. .++..++..+. ...++++|+..+.+.....-+++.. .
T Consensus 29 ~l~~Y~kLI------~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~ 102 (608)
T PF10345_consen 29 QLKQYYKLI------ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRC 102 (608)
T ss_pred hHHHHHHHH------HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 344555555 34556666655 33333322 34555666665 6677777777777764432222221 2
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCC----CCHHHHHHH-HHHHHhcCCHHHHHHHHHHHhhCC---CCCChhhHH
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLH----PDAFSYNIL-IHGLCIAGSMEEALEFTNDMGRHG---VEPDAITYS 172 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~~~ 172 (647)
-..++..+.+.+... |....++.++.--. +-...|..+ +..+...+++..|.+.++.+.... ..|-..++.
T Consensus 103 ~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~ 181 (608)
T PF10345_consen 103 QFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLA 181 (608)
T ss_pred HHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 234455555555444 77777766653111 112233333 222223367777777777665532 223333333
Q ss_pred HHHHHHH--hcCChhhHHHHHHHHHhcCC---------CCCcchHHHHHHHH--HhcCChHHHHHHHHHH
Q 006396 173 ILAKGFH--LLSQISGAWKVIQKLLIKGS---------DPDIVTYTVLICGY--CQIGNVEEGLKLREVM 229 (647)
Q Consensus 173 ~l~~~~~--~~~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~ 229 (647)
.++.+.. ..+..+.+.+.++.+..... .|...+|..++..+ ...|++..+...++.+
T Consensus 182 ~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 182 SLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4444333 34445555555555532211 12233455555443 3456665665554444
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=90.33 E-value=0.74 Score=27.24 Aligned_cols=29 Identities=14% Similarity=0.205 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+++.++..|...|++++|..+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 35788999999999999999999999874
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=90.28 E-value=3 Score=34.34 Aligned_cols=27 Identities=7% Similarity=0.053 Sum_probs=11.6
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
++|...|+++.+ ..|+...|..-+...
T Consensus 97 ~kA~~~FqkAv~--~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 97 EKATEYFQKAVD--EDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHH--H-TT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHh--cCCCcHHHHHHHHHH
Confidence 334444444444 345555555544433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=90.21 E-value=3.3 Score=29.90 Aligned_cols=45 Identities=16% Similarity=0.140 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+..+-++.+...++-|++.+..+-+++|.+.+++..|.++++.+.
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444444444444455555555555555555555555555555444
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=90.21 E-value=27 Score=36.70 Aligned_cols=168 Identities=9% Similarity=0.018 Sum_probs=99.2
Q ss_pred cCCHHHHHHHHHHHHHcC-CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 461 QWKLQEAVQLLEDMYVIG-VTPDQ--ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~-~~~~~--~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
..+.+.|..++....... +.+.. .++..+.......+...++...++..... ..+......-+..-...++++.+
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~--~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR--SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc--cCCcHHHHHHHHHHHHccCHHHH
Confidence 456788888888775432 22222 22333433333332255667777665432 22444455555566688999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCC--C----CCCH---
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNG--F----PPDQ--- 608 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~~--- 608 (647)
...+..|... ..-...-...+++++...|+.++|..+|+++... .+|+..+-.-..... + +|..
T Consensus 332 ~~~i~~L~~~-~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~------~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~ 404 (644)
T PRK11619 332 NTWLARLPME-AKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ------RGFYPMVAAQRLGEEYPLKIDKAPKPDSA 404 (644)
T ss_pred HHHHHhcCHh-hccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC------CCcHHHHHHHHcCCCCCCCCCCCCchhhh
Confidence 9999888653 2334445567888888899999999999998432 234433322111111 1 0111
Q ss_pred ---HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 609 ---EICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 609 ---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
.--...+..+...|+..+|...+..+...
T Consensus 405 ~~~~~~~~ra~~L~~~g~~~~a~~ew~~~~~~ 436 (644)
T PRK11619 405 LTQGPEMARVRELMYWNMDNTARSEWANLVAS 436 (644)
T ss_pred hccChHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11233456777889999998888777653
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=89.83 E-value=0.69 Score=27.82 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.8
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELD 26 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~ 26 (647)
|+++|...|+.+.|+.++++++..+
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 7899999999999999999999764
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=89.67 E-value=30 Score=36.60 Aligned_cols=224 Identities=17% Similarity=0.112 Sum_probs=121.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCccc-------hHHHH-HHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRISPSIVT-------FNSLI-YGFCKNGKVADARRLLDTIKLH----GLEPSAVTYTTF 419 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------~~~l~-~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l 419 (647)
......++++|..++.++...-..|+... ++.+- ......++++.|.++.+..... -..+....+..+
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~ 503 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVL 503 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhh
Confidence 34457788899888888766433332221 22222 2234578889998888877653 123345566777
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhCCCCCCHH---HHHHHHH--HHHhcCCHHH--HHHHHHHHHHc---CCC---CCHHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETKAIGPTHV---TYTVVIK--GLCKQWKLQE--AVQLLEDMYVI---GVT---PDQITY 486 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~--~~~~~g~~~~--a~~~~~~~~~~---~~~---~~~~~~ 486 (647)
..+..-.|++++|..+..+..+..-.-+.. .|..+.. .+..+|.... ....+...... ..+ +-..+.
T Consensus 504 ~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r 583 (894)
T COG2909 504 GEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIR 583 (894)
T ss_pred hHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHH
Confidence 777778899999988887665532122323 3333322 2455663332 23333333221 111 122344
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHH----hCCCCCCHHHH--HHHHHHHhhcCChhhHHHHHHHHHHcCCCC----CHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMW----LHNLEPTSATY--NILIDGLCVNGDLKNADCLLVSLQEHNISL----TKVAY 556 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~ 556 (647)
..++.++.+ ++.+..-..... .....|-.... ..|+.+....|++++|...+.++......+ +..+-
T Consensus 584 ~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~ 660 (894)
T COG2909 584 AQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAA 660 (894)
T ss_pred HHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHH
Confidence 555555555 333333222222 22222222222 367788888999999999998888632222 22222
Q ss_pred HHHHH--HHHhcCCHHHHHHHHHH
Q 006396 557 TTIIK--AHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 557 ~~l~~--~~~~~g~~~~A~~~~~~ 578 (647)
...++ .....|+.+.+.....+
T Consensus 661 ~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 661 AYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HHHhhHHHhcccCCHHHHHHHHHh
Confidence 22222 23456888888877766
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.9 Score=35.50 Aligned_cols=84 Identities=12% Similarity=0.015 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCC
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG----------DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNG 603 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 603 (647)
++.|.+.++.....+ +.|...+.....++.... .+++|+.-|++++..+
T Consensus 7 FE~ark~aea~y~~n-P~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-------------------- 65 (186)
T PF06552_consen 7 FEHARKKAEAAYAKN-PLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-------------------- 65 (186)
T ss_dssp HHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH---------------------
T ss_pred HHHHHHHHHHHHHhC-cHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC--------------------
Confidence 345555555555443 455666655555554432 3345566666666665
Q ss_pred CCCCHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHhCCC
Q 006396 604 FPPDQEICEVMLIAFHQGGD-----------LGSVFELAAVMIKSGL 639 (647)
Q Consensus 604 ~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~ 639 (647)
|....++..++.+|...|. +++|.+.|+++.+.+|
T Consensus 66 -P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P 111 (186)
T PF06552_consen 66 -PNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDP 111 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-T
T ss_pred -CchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCC
Confidence 5567889999988886553 5666666777666543
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=89.35 E-value=0.5 Score=24.55 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.4
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHH
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
....++.++...|+.++|.++++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 56688999999999999999876
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.22 E-value=14 Score=32.06 Aligned_cols=168 Identities=17% Similarity=0.011 Sum_probs=75.5
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCCCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 14 DAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVS-----ETPRNVYTNSIVIDGLCQQSRLQDAILFLQE 88 (647)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 88 (647)
+|.++..++-+.. ++..-+. +....+.+++|.++|.++-.. ....-..+|...+..+.+.|+-++|-..|-.
T Consensus 3 ~a~~l~k~AEkK~-~~s~gF~--lfgg~~k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~Yve 79 (288)
T KOG1586|consen 3 DAVQLMKKAEKKL-NGSGGFL--LFGGSNKYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVE 79 (288)
T ss_pred cHHHHHHHHHHhc-ccCCccc--ccCCCcchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHH
Confidence 4566666666553 2222222 444556889999998887531 0001122333333344444444444333333
Q ss_pred hhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHhhC
Q 006396 89 TAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY----G-LHPDAFSYNILIHGLCIA-GSMEEALEFTNDMGRH 162 (647)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 162 (647)
+- -+.+.+++++|...++..++. | +..-....-.+...|-.. .+++.|+..|+..-+.
T Consensus 80 A~----------------~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 80 AA----------------NCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HH----------------HHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 32 233333454444444433321 0 000011112233333222 4555666665555432
Q ss_pred --CCCCChhh---HHHHHHHHHhcCChhhHHHHHHHHHhcCCC
Q 006396 163 --GVEPDAIT---YSILAKGFHLLSQISGAWKVIQKLLIKGSD 200 (647)
Q Consensus 163 --~~~~~~~~---~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 200 (647)
|-+.+... +..+...-+..+++.+|.++|++.......
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 11112222 222333344567788888888887766443
|
|
| >KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=89.21 E-value=0.17 Score=45.65 Aligned_cols=118 Identities=12% Similarity=-0.022 Sum_probs=81.2
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A 572 (647)
...|.++.|++.+...+..+ ++....|..-..++.+.+++..|++-+....+ +.||.. -|-.-..+..-.|+|++|
T Consensus 125 ln~G~~~~ai~~~t~ai~ln-p~~a~l~~kr~sv~lkl~kp~~airD~d~A~e--in~Dsa~~ykfrg~A~rllg~~e~a 201 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAIELN-PPLAILYAKRASVFLKLKKPNAAIRDCDFAIE--INPDSAKGYKFRGYAERLLGNWEEA 201 (377)
T ss_pred hcCcchhhhhcccccccccC-CchhhhcccccceeeeccCCchhhhhhhhhhc--cCcccccccchhhHHHHHhhchHHH
Confidence 45688999999999888843 44567777778888889999999999988887 445543 343444455667999999
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.++.+.+.+ +.+....|. -...-..+..++=...+++.++
T Consensus 202 a~dl~~a~kld--------------------~dE~~~a~l--KeV~p~a~ki~e~~~k~er~~~ 243 (377)
T KOG1308|consen 202 AHDLALACKLD--------------------YDEANSATL--KEVFPNAGKIEEHRRKYERARE 243 (377)
T ss_pred HHHHHHHHhcc--------------------ccHHHHHHH--HHhccchhhhhhchhHHHHHHH
Confidence 99999999887 344444443 3344445555555555555544
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.10 E-value=14 Score=32.00 Aligned_cols=27 Identities=11% Similarity=0.155 Sum_probs=14.6
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..++..-...+++.+|+++|++.....
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~~s 184 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVARSS 184 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444566666666666665543
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.08 E-value=20 Score=33.78 Aligned_cols=78 Identities=8% Similarity=-0.090 Sum_probs=49.4
Q ss_pred hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 006396 80 QDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI---AGSMEEALEFT 156 (647)
Q Consensus 80 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~ 156 (647)
+.-+.+++++++.++ .+...+..++..+.+..+.+...+-++.++... +.+...|...+..... .-.++....+|
T Consensus 48 E~klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 445567777777644 356677777777777777777777777777763 3356677776665543 22355555555
Q ss_pred HHH
Q 006396 157 NDM 159 (647)
Q Consensus 157 ~~~ 159 (647)
.+.
T Consensus 126 ~~~ 128 (321)
T PF08424_consen 126 EKC 128 (321)
T ss_pred HHH
Confidence 444
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=89.01 E-value=8.4 Score=33.57 Aligned_cols=103 Identities=9% Similarity=-0.096 Sum_probs=58.8
Q ss_pred cCChhhHHHHHHHHHH----cCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC
Q 006396 531 NGDLKNADCLLVSLQE----HNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF 604 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~----~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 604 (647)
...+++|.+.+.-++- .+.++. ...+..+++.|...|+.+....+++++.+.- ...+...-....-
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y--------~~a~~~e~~~~~~ 161 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFY--------EEAYENEDFPIEG 161 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHH--------HHHHHhCcCCCCC
Confidence 3455566555544441 122333 3366777888888888665555555444310 0000000000001
Q ss_pred CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 605 PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 605 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
..+..+...++....+.|+.++|.+++.+++..+-.+
T Consensus 162 ~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 162 MDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 2235677788999999999999999999998765433
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=88.92 E-value=0.63 Score=28.01 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.0
Q ss_pred HHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 612 EVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
..++++|...|+.+.|++++++++..|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 368899999999999999999998654
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=88.54 E-value=25 Score=34.09 Aligned_cols=25 Identities=8% Similarity=-0.052 Sum_probs=17.8
Q ss_pred cCCCHHHHHHHHHHHHhCCCCCCCC
Q 006396 620 QGGDLGSVFELAAVMIKSGLLPDKF 644 (647)
Q Consensus 620 ~~g~~~~A~~~~~~~~~~~~~~~~~ 644 (647)
...++..|++++++..+-+...+.+
T Consensus 788 ~~~~~~~~~~~~~~~~~~~~~~~~~ 812 (831)
T PRK15180 788 HLRDYTQALQYWQRLEKVNGPTEPV 812 (831)
T ss_pred HHHHHHHHHHHHHHHHhccCCCcch
Confidence 3468889999999988765544443
|
|
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=88.45 E-value=8 Score=32.75 Aligned_cols=76 Identities=11% Similarity=0.075 Sum_probs=49.4
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVM 614 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 614 (647)
++|.+.|-.+...+.--++.....++. |.-..|.++++.++.++++.. ..+-.+|++++..|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAt-yY~krD~~Kt~~ll~~~L~l~-----------------~~~~~~n~eil~sL 184 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALAT-YYTKRDPEKTIQLLLRALELS-----------------NPDDNFNPEILKSL 184 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHH-HHHccCHHHHHHHHHHHHHhc-----------------CCCCCCCHHHHHHH
Confidence 567777777766553334444444444 444677888888888777654 01125667888888
Q ss_pred HHHHHcCCCHHHHH
Q 006396 615 LIAFHQGGDLGSVF 628 (647)
Q Consensus 615 ~~~~~~~g~~~~A~ 628 (647)
+..+.+.|+++.|.
T Consensus 185 as~~~~~~~~e~AY 198 (203)
T PF11207_consen 185 ASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHhcchhhhh
Confidence 88888888887774
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=88.43 E-value=64 Score=38.68 Aligned_cols=322 Identities=13% Similarity=0.069 Sum_probs=168.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHhCCC--CcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 208 VLICGYCQIGNVEEGLKLREVMLSQGF--KLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 208 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
.+..+-.+.+.+..|...++.-..... ......+-.+...|...+++|...-+...... .| ....-|-....
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~---sl~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DP---SLYQQILEHEA 1461 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Cc---cHHHHHHHHHh
Confidence 445566778889999999888311100 11222344455589999999988877764221 22 23344555677
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHH-HHHHHHhcCCHHHHHH
Q 006396 286 QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNI-MIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 286 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~~~~a~~ 364 (647)
.|++..|...|+.+.+.+ ++...++..++......+.+....-..+...... .+....++. =+.+--+.++|+....
T Consensus 1462 ~g~~~da~~Cye~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~-se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINR-SEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred hccHHHHHHHHHHhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhcc-CHHHHHHHHHHHHHHhhhcchhhhhh
Confidence 899999999999999874 3446778878887777888877776655554432 222222322 2334456777777766
Q ss_pred HHHHHHHCCCCCCccchHHH--HHHHHhcC--CHHHHHHHHHHHHHC--------CCCCC-HHHHHHHHHHHHHcCCHHH
Q 006396 365 LYRQLIEKRISPSIVTFNSL--IYGFCKNG--KVADARRLLDTIKLH--------GLEPS-AVTYTTFMNAYCEEGNIQR 431 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~l--~~~~~~~~--~~~~a~~~~~~~~~~--------~~~~~-~~~~~~l~~~~~~~~~~~~ 431 (647)
... .. +..+|... .....+.. +.-.-.+..+.+.+. +..-+ ...|..++....-..- +.
T Consensus 1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~el-~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLEL-EN 1611 (2382)
T ss_pred hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHHH-HH
Confidence 654 11 33333332 22222222 111111222222221 11100 1233333333222111 11
Q ss_pred HHHHHHHHHh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 432 LLALLQEMET-KAIGPTHVTYTVVIKGLCKQWKLQEAVQLLED-MYVIGVT-----PDQITYNTIIRSFCKCKDLRKAFQ 504 (647)
Q Consensus 432 a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~-~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~ 504 (647)
-.+.+..... ....-+...|..-+..-....+..+-+--+++ +...... .-..+|....+.....|.++.|..
T Consensus 1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence 1111111000 00111112222222221111122221111221 1111112 224578888888888999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 505 LLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 505 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
.+-.+.+.+ -+..+-..+..+...|+-..|..++++..+.+
T Consensus 1692 all~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred HHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 888887754 33455566778888999999999999988653
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=88.42 E-value=8.1 Score=28.33 Aligned_cols=46 Identities=15% Similarity=0.147 Sum_probs=25.3
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+..+-++.+...++-|++.+..+.+++|.+.+++..|.++++.+..
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~ 73 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKD 73 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555666666666666666666666666666666654
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.41 E-value=21 Score=33.16 Aligned_cols=45 Identities=20% Similarity=0.168 Sum_probs=23.2
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.|...+.++...+ +......+...|.. ..+.++|..+|+++.+.|
T Consensus 173 ~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g 221 (292)
T COG0790 173 KALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG 221 (292)
T ss_pred hHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC
Confidence 5666666665544 33333333333322 235666666666666655
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=88.23 E-value=1.4 Score=26.04 Aligned_cols=28 Identities=21% Similarity=0.318 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+++.++.+|...|++++|..++++++.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4677888888888888888888888875
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=88.04 E-value=4.5 Score=29.20 Aligned_cols=62 Identities=13% Similarity=0.222 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
+.=++.+-+..+....+-|++.+..+.+++|.+.+|+..|.++++.+... ...+...|..++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~l 83 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYIL 83 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHH
Confidence 34455666666666677788888888888888888888888888876642 122344555544
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.88 E-value=8.8 Score=28.14 Aligned_cols=63 Identities=11% Similarity=0.066 Sum_probs=42.7
Q ss_pred HHHHHHHHhhcCChh--hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 521 YNILIDGLCVNGDLK--NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|..-...|....+.+ +..+-++.+...++.|++.+....+++|.+.+++.-|+++++-+..+-
T Consensus 11 F~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~ 75 (108)
T PF02284_consen 11 FDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC 75 (108)
T ss_dssp HHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc
Confidence 333334444433333 456666777777889999999999999999999999999999998764
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.88 E-value=22 Score=38.72 Aligned_cols=135 Identities=16% Similarity=0.147 Sum_probs=75.4
Q ss_pred ChhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC-----cccHHHHHHHHHh
Q 006396 1 MLAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRN-----VYTNSIVIDGLCQ 75 (647)
Q Consensus 1 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~ 75 (647)
|++.+|+.+|+..+|+..|.++.+- +..+. +...++...+-.. + .+ ..|..++ ..-|..+++.+-+
T Consensus 925 mlg~~yl~tge~~kAl~cF~~a~Sg-~ge~~-aL~~lv~~~~p~~-----~-sv-~dG~t~s~e~t~lhYYlkv~rlle~ 995 (1480)
T KOG4521|consen 925 MLGIAYLGTGEPVKALNCFQSALSG-FGEGN-ALRKLVYFLLPKR-----F-SV-ADGKTPSEELTALHYYLKVVRLLEE 995 (1480)
T ss_pred hhheeeecCCchHHHHHHHHHHhhc-cccHH-HHHHHHHHhcCCC-----C-ch-hcCCCCCchHHHHHHHHHHHHHHHH
Confidence 5778899999999999999998864 22222 3333333111000 0 00 0111111 1124556777778
Q ss_pred cCChhHHHHHHHHhhcCCCCcC---HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHH----HHHHHHHHHHhcCC
Q 006396 76 QSRLQDAILFLQETAGKEFGPS---VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAF----SYNILIHGLCIAGS 148 (647)
Q Consensus 76 ~g~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~ 148 (647)
.+..+.+.++...+++.-+..+ ..+++.+..-....|.+-+|...+ .+ .||.. ....++..++.+|.
T Consensus 996 hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai---~~---npdserrrdcLRqlvivLfecg~ 1069 (1480)
T KOG4521|consen 996 HNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAI---LR---NPDSERRRDCLRQLVIVLFECGE 1069 (1480)
T ss_pred hccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHH---Hc---CCcHHHHHHHHHHHHHHHHhccc
Confidence 8888888888877766422222 225566666666777776665443 32 33433 34556666666666
Q ss_pred HH
Q 006396 149 ME 150 (647)
Q Consensus 149 ~~ 150 (647)
++
T Consensus 1070 l~ 1071 (1480)
T KOG4521|consen 1070 LE 1071 (1480)
T ss_pred hH
Confidence 54
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=87.72 E-value=1.7 Score=24.14 Aligned_cols=30 Identities=27% Similarity=0.334 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+|..++..+...|++++|...|+++++..
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 357778888888899999999988888754
|
... |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.68 E-value=0.71 Score=25.46 Aligned_cols=21 Identities=29% Similarity=0.312 Sum_probs=8.7
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 006396 105 MSRYCKLGFAEVAKGLFCLML 125 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~ 125 (647)
+.++.+.|++++|.+.|++++
T Consensus 7 a~~~~~~g~~~~A~~~~~~~~ 27 (33)
T PF13174_consen 7 ARCYYKLGDYDEAIEYFQRLI 27 (33)
T ss_dssp HHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHH
Confidence 333334444444444444443
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.63 E-value=19 Score=31.82 Aligned_cols=59 Identities=15% Similarity=0.213 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhC-----CC------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETK-----AI------GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYV 476 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~-----~~------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 476 (647)
.+...|...+++.+...+++++... |- ..-...|..-|+.|....+-.+-..++++.+.
T Consensus 150 KLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalh 219 (440)
T KOG1464|consen 150 KLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALH 219 (440)
T ss_pred hHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHH
Confidence 3444555555555555555554331 00 01123455556666666665666666665544
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.58 E-value=23 Score=32.58 Aligned_cols=188 Identities=12% Similarity=0.133 Sum_probs=90.5
Q ss_pred CHHHHHHHHHHHHHcCCH----HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHHHHcCCCCC
Q 006396 412 SAVTYTTFMNAYCEEGNI----QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKL-----QEAVQLLEDMYVIGVTPD 482 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-----~~a~~~~~~~~~~~~~~~ 482 (647)
+...-...+.++...|+. .++...+..+... .|+...-...+.++...+.. ..+...+.... ..++
T Consensus 67 d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~---~D~~ 141 (280)
T PRK09687 67 NPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITA---FDKS 141 (280)
T ss_pred CHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHh---hCCC
Confidence 444444444555555542 3455555544322 34444444444444433211 12222222222 1334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
..+-...+.++.+.++ ..+...+-.+++ .++..+-..-+.++...+ +...+...+..++. .++..+-...+.
T Consensus 142 ~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~ 214 (280)
T PRK09687 142 TNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAII 214 (280)
T ss_pred HHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHH
Confidence 4555555666655555 345555555554 234444444444444432 23345555555553 345556666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++.+.|+ ..|+..+-+.++.+ + .....+.++...|+- +|...+..+.+..
T Consensus 215 aLg~~~~-~~av~~Li~~L~~~-----------------------~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~~ 264 (280)
T PRK09687 215 GLALRKD-KRVLSVLIKELKKG-----------------------T--VGDLIIEAAGELGDK-TLLPVLDTLLYKF 264 (280)
T ss_pred HHHccCC-hhHHHHHHHHHcCC-----------------------c--hHHHHHHHHHhcCCH-hHHHHHHHHHhhC
Confidence 6666666 34555555555433 1 223555666666663 5666666666543
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=87.29 E-value=8.3 Score=30.03 Aligned_cols=68 Identities=12% Similarity=0.125 Sum_probs=33.6
Q ss_pred CCCHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++..+--.+.+++.++.+ ..+.+.+++.+.+.. +|+ ......++-++++.|++++++++.+.+++..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~-~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSA-HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhc-CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 3444444455555555443 333455555555421 222 2244455555666666666666666555543
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.28 E-value=23 Score=35.56 Aligned_cols=42 Identities=10% Similarity=0.189 Sum_probs=19.7
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHH
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQK 193 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 193 (647)
.|+.+.|.++..+. .+..-|..|..+....+++..|.+.|..
T Consensus 650 lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~ 691 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLR 691 (794)
T ss_pred cCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHh
Confidence 44555544444333 1334455555555555555555554444
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=86.47 E-value=22 Score=31.16 Aligned_cols=58 Identities=17% Similarity=0.048 Sum_probs=30.0
Q ss_pred HHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+++...|++-++++.-.+++... +.|..+|..-+.+....=+..+|..-|.++++..
T Consensus 237 ~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 237 CQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 344444555555555555555531 3344455555555555555555555555555543
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=86.07 E-value=1.1 Score=23.31 Aligned_cols=22 Identities=18% Similarity=0.154 Sum_probs=11.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQ 87 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~ 87 (647)
...++..+...|++++|...++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 3445555555555555555543
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=85.94 E-value=21 Score=30.41 Aligned_cols=77 Identities=16% Similarity=0.056 Sum_probs=51.0
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc---CCCCCcchHHHHHHHHHhcCChHH
Q 006396 145 IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK---GSDPDIVTYTVLICGYCQIGNVEE 221 (647)
Q Consensus 145 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~ 221 (647)
+.|+ +.|.+.|-.+...+.--++.....|+..|. ..+.+++..++-...+. +-.+|+..+.+|++.+.+.|+++.
T Consensus 119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~ 196 (203)
T PF11207_consen 119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ 196 (203)
T ss_pred ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence 3444 567777777766654445555555555554 56777777777776654 235677778888888888888877
Q ss_pred HH
Q 006396 222 GL 223 (647)
Q Consensus 222 a~ 223 (647)
|.
T Consensus 197 AY 198 (203)
T PF11207_consen 197 AY 198 (203)
T ss_pred hh
Confidence 64
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.87 E-value=0.19 Score=40.68 Aligned_cols=124 Identities=12% Similarity=0.143 Sum_probs=58.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
+..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++... ..-...++..|.+.|.+
T Consensus 14 i~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~-------~yd~~~~~~~c~~~~l~ 86 (143)
T PF00637_consen 14 ISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN-------NYDLDKALRLCEKHGLY 86 (143)
T ss_dssp HHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS-------SS-CTHHHHHHHTTTSH
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc-------ccCHHHHHHHHHhcchH
Confidence 44455555666666666666654434456666666666666665566555554111 11122344445555555
Q ss_pred HHHHHHHHHHHHcCCccc----chhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 570 HKAMTFFCQMVEKGFEIS----IRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
++|.-++.++-...--.. ...+...+ ++.. -.++++.|..++..+...++.
T Consensus 87 ~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~-e~~~---~~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 87 EEAVYLYSKLGNHDEALEILHKLKDYEEAI-EYAK---KVDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp HHHHHHHHCCTTHTTCSSTSSSTHCSCCCT-TTGG---GCSSSHHHHHHHHHHCTSTCT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHccHHHHH-HHHH---hcCcHHHHHHHHHHHHhcCcc
Confidence 555555554322110000 00000000 1111 124577888888888776653
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.66 E-value=49 Score=34.52 Aligned_cols=21 Identities=24% Similarity=0.338 Sum_probs=11.4
Q ss_pred HHHHHHccCCHHHHHHHHHHH
Q 006396 279 LIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 279 l~~~~~~~~~~~~a~~~~~~~ 299 (647)
|+..|...+++..|+.++-.+
T Consensus 511 La~LYl~d~~Y~~Al~~ylkl 531 (846)
T KOG2066|consen 511 LAHLYLYDNKYEKALPIYLKL 531 (846)
T ss_pred HHHHHHHccChHHHHHHHHhc
Confidence 555555555555555555444
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=85.34 E-value=34 Score=32.34 Aligned_cols=130 Identities=10% Similarity=-0.011 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA---EGDVHKAMTFF 576 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~ 576 (647)
+.-+.+++++++.+ +.+...+..++..+.+..+.++..+.|+++.... +-+...|...+..... .-.++.....|
T Consensus 48 E~klsilerAL~~n-p~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~-~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y 125 (321)
T PF08424_consen 48 ERKLSILERALKHN-PDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKN-PGSPELWREYLDFRQSNFASFTVSDVRDVY 125 (321)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 45566777777753 3457777777888888778888888888888752 3356677777665544 33577777777
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCCC-----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
.++++.--... ........-.++ ..++..+...+.++|..+.|..+++-+++.+.
T Consensus 126 ~~~l~~L~~~~--------~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~ 185 (321)
T PF08424_consen 126 EKCLRALSRRR--------SGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF 185 (321)
T ss_pred HHHHHHHHHhh--------ccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence 77764210000 000000001111 34555666778899999999999999999877
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=84.89 E-value=3.3 Score=28.61 Aligned_cols=49 Identities=16% Similarity=0.070 Sum_probs=33.4
Q ss_pred hcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 530 VNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAEGDVHKAMTFFCQ 578 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~ 578 (647)
...+.++|+..|+++++.-..+. ..++..++.+++..|++++++++--.
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~ 68 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQ 68 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677888888888886422221 22667777888888888887766544
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=84.87 E-value=1.4 Score=23.61 Aligned_cols=31 Identities=16% Similarity=0.079 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..|..++..+...|++++|...++..++..+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4677889999999999999999999987543
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=84.84 E-value=33 Score=31.81 Aligned_cols=23 Identities=13% Similarity=0.377 Sum_probs=11.0
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHH
Q 006396 431 RLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 431 ~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
++.++++.+.+.|+++....|..
T Consensus 200 r~~~l~~~l~~~~~kik~~~yp~ 222 (297)
T PF13170_consen 200 RVIELYNALKKNGVKIKYMHYPT 222 (297)
T ss_pred HHHHHHHHHHHcCCccccccccH
Confidence 44455555555555444444433
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=84.79 E-value=69 Score=35.43 Aligned_cols=82 Identities=12% Similarity=0.095 Sum_probs=42.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHH
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAV--TYTTFMNAYCE 425 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~ 425 (647)
+....+.+...+++|.-.|+..-+ ....+.+|..+|+|++|..+..++.. .-+.. +-..|..-+..
T Consensus 944 ~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e 1011 (1265)
T KOG1920|consen 944 AYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVE 1011 (1265)
T ss_pred HHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHH
Confidence 333444445566666555554322 12345566666777777666655542 11111 12445555666
Q ss_pred cCCHHHHHHHHHHHHh
Q 006396 426 EGNIQRLLALLQEMET 441 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~ 441 (647)
.+++-+|-++..+...
T Consensus 1012 ~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1012 QRKHYEAAKILLEYLS 1027 (1265)
T ss_pred cccchhHHHHHHHHhc
Confidence 6666666666655543
|
|
| >KOG2471 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.18 E-value=44 Score=32.71 Aligned_cols=41 Identities=15% Similarity=0.153 Sum_probs=29.3
Q ss_pred hcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 215 QIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 215 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
..+.++...+.++.+...|.......++.-...|.+.|...
T Consensus 29 ~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq 69 (696)
T KOG2471|consen 29 NNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQ 69 (696)
T ss_pred CCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccch
Confidence 45778888888888887776666666777777777776543
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=83.59 E-value=62 Score=33.97 Aligned_cols=90 Identities=18% Similarity=0.114 Sum_probs=34.4
Q ss_pred HHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCccchHHHHHHHHh-
Q 006396 313 AILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-SPSIVTFNSLIYGFCK- 390 (647)
Q Consensus 313 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~- 390 (647)
.....+.-.|+++.|.+.+-. ......+..++...+..|.-.+-.+... ..+..... .|.+.-+..++..|.+
T Consensus 263 ~Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~ 337 (613)
T PF04097_consen 263 LYFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRS 337 (613)
T ss_dssp -HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHT
T ss_pred HHHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHH
Confidence 344555567777777777655 1112233444443333322211111111 22221110 1111446666766665
Q ss_pred --cCCHHHHHHHHHHHHHC
Q 006396 391 --NGKVADARRLLDTIKLH 407 (647)
Q Consensus 391 --~~~~~~a~~~~~~~~~~ 407 (647)
..++..|.+++-.+...
T Consensus 338 F~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 338 FEITDPREALQYLYLICLF 356 (613)
T ss_dssp TTTT-HHHHHHHHHGGGGS
T ss_pred HhccCHHHHHHHHHHHHHc
Confidence 45677777777666543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=83.10 E-value=21 Score=31.14 Aligned_cols=114 Identities=7% Similarity=-0.134 Sum_probs=61.3
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHH
Q 006396 42 RHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGL 120 (647)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~ 120 (647)
.+++.|.+.|.+++...| ..+.-|+.-+-++++..+++.+..--.++++. .||.. ....+...+.....+++|+..
T Consensus 24 k~y~~ai~~y~raI~~nP-~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~~eaI~~ 100 (284)
T KOG4642|consen 24 KRYDDAIDCYSRAICINP-TVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGYDEAIKV 100 (284)
T ss_pred hhhchHHHHHHHHHhcCC-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccccHHHHH
Confidence 356666666666665443 33344555666666777777776666666653 34433 444555556666667777766
Q ss_pred HHHHHh----CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 121 FCLMLK----YGLHPDAFSYNILIHGLCIAGSMEEALEFTND 158 (647)
Q Consensus 121 ~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 158 (647)
+.+... ..+++.......|..+--..-...+..++.+.
T Consensus 101 Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 101 LQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 666532 22333344555555543333333344444433
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=82.29 E-value=6.5 Score=38.88 Aligned_cols=95 Identities=19% Similarity=0.101 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
+|...-.+...|+...|..++..+.. ..| .......|.....+.|-.-+|-.++.+.+... ...+-++..+.+++
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~--~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~ 686 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALN--LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAY 686 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhc--cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhH
Confidence 33333334456777777777776665 233 12233345555566666666777776666543 33445666677777
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006396 564 CAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~ 583 (647)
....++++|++.|+.+.++.
T Consensus 687 l~l~~i~~a~~~~~~a~~~~ 706 (886)
T KOG4507|consen 687 LALKNISGALEAFRQALKLT 706 (886)
T ss_pred HHHhhhHHHHHHHHHHHhcC
Confidence 77777777777777777665
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=82.26 E-value=39 Score=30.70 Aligned_cols=116 Identities=10% Similarity=0.124 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHHhh-CCCCCChhhHHHHHHHHHh-cCC-hhhHHHHHHHHHhc-CCCCCcchHHHHHHHHHhcCChHHHH
Q 006396 148 SMEEALEFTNDMGR-HGVEPDAITYSILAKGFHL-LSQ-ISGAWKVIQKLLIK-GSDPDIVTYTVLICGYCQIGNVEEGL 223 (647)
Q Consensus 148 ~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~-~~~-~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 223 (647)
-..+|+.+|+...- ..+-.|..+...+++.... .+. ...-.++.+-+... +..++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34556666663211 1133466666677766665 222 22233444444322 45667778888888888888888888
Q ss_pred HHHHHHHhC-CCCcCcccHHHHHHHHHhcCChhHHHHHHHH
Q 006396 224 KLREVMLSQ-GFKLNVIAYSVLLSSMCKSGRIDEALGLLYE 263 (647)
Q Consensus 224 ~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 263 (647)
++++..... +...|...|..+++.....|+..-...+.++
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~ 263 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDD 263 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhC
Confidence 888887766 5566888888888888888887766665554
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=82.13 E-value=39 Score=30.60 Aligned_cols=59 Identities=12% Similarity=0.118 Sum_probs=38.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
++....+.|..+|.+.+|.++.++++..+ |-+...+..+...|...||--+|..-++++
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld---------------------pL~e~~nk~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD---------------------PLSEQDNKGLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC---------------------hhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence 34455566777777777777777777666 566666667777777777766665555544
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=82.10 E-value=13 Score=33.86 Aligned_cols=103 Identities=17% Similarity=0.183 Sum_probs=65.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHH
Q 006396 443 AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG---VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSA 519 (647)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~ 519 (647)
|.+....+...++..-....+++.+...+-++.... ..++. +-..+++.+.+ =+.++++.++..-+..|+-||..
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlllk-y~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLLK-YDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHHc-cChHHHHHHHhCcchhccccchh
Confidence 444455555666655555667777777777666421 11111 11223333333 35667777777777788888888
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+++.+++.+.+.+++.+|.++...|...
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 8888888888888888888877777654
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=81.84 E-value=3.5 Score=26.13 Aligned_cols=31 Identities=6% Similarity=0.059 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+....++-++.+.|++++|++..+.+++..|
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 3566788899999999999999999999654
|
|
| >KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=81.55 E-value=36 Score=29.87 Aligned_cols=62 Identities=10% Similarity=-0.088 Sum_probs=43.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
.+....++++..|++-++++....++...+ .+..+|..-+.+.+..=+.++|..=|..+++.
T Consensus 232 LllNy~QC~L~~~e~yevleh~seiL~~~~-~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 232 LLLNYCQCLLKKEEYYEVLEHCSEILRHHP-GNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHhHHHHHhhHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 345556677777888888887777776643 35667777677666666777777777777765
|
|
| >KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=80.20 E-value=19 Score=35.88 Aligned_cols=145 Identities=14% Similarity=-0.035 Sum_probs=96.3
Q ss_pred cCHHHHHHHHHhc-----CChhHHHHHHHHHHhCCCCCCcccH---HHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHh
Q 006396 29 VSIQTYNSLLYNL-----RHTDIMWDLYDDIKVSETPRNVYTN---SIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVS 100 (647)
Q Consensus 29 ~~~~~~~~ll~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 100 (647)
|+..+...++.+. ..-+.+..+|.-+.. ++...| +..+-.....|+...|...+..+....+...-..
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~~~----~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~ 644 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAINK----PNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVP 644 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHhcC----CCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhccc
Confidence 5666666666522 233445555555544 333333 3333344578999999999888876544444446
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 101 LNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 101 ~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
...++....+.|....|-.++.+.+... ...+-++..+..++....+.+.|++.|+...+.. +.+...-+.|..+-+
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~-~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLT-TKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcC-CCChhhHHHHHHHHH
Confidence 7778888888888888888888877765 4556677788888888889999999998887762 345555565554433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 84.9 bits (208), Expect = 4e-17
Identities = 20/172 (11%), Positives = 58/172 (33%), Gaps = 4/172 (2%)
Query: 342 DVVLYNIMIDGYVKLGNIGEAVQL---YRQLIEKRISPSIVTFNSLIYGFCKNGKVADAR 398
+ + A L + +KR ++ +N+++ G+ + G +
Sbjct: 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELV 185
Query: 399 RLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLA-LLQEMETKAIGPTHVTYTVVIKG 457
+L +K GL P ++Y + + + L++M + + + V++
Sbjct: 186 YVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSE 245
Query: 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509
+ L+ ++ + P + + ++R +L +
Sbjct: 246 EDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPL 297
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 80.2 bits (196), Expect = 1e-15
Identities = 20/182 (10%), Positives = 57/182 (31%), Gaps = 4/182 (2%)
Query: 189 KVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREV---MLSQGFKLNVIAYSVLL 245
+ + L V + L + Y+ ++
Sbjct: 113 APSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM 172
Query: 246 SSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLY-NEMCSKRI 304
+ G E + +L+ ++ GL PDL++Y+ ++ + +QD+ I+ +M + +
Sbjct: 173 LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGL 232
Query: 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQ 364
+ +L ++ + + + V + ++ +
Sbjct: 233 KLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPK 292
Query: 365 LY 366
L+
Sbjct: 293 LH 294
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 79.9 bits (195), Expect = 1e-15
Identities = 31/211 (14%), Positives = 61/211 (28%), Gaps = 4/211 (1%)
Query: 375 SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQR--- 431
SP L+ + + L F +
Sbjct: 89 SPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHH 148
Query: 432 LLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491
LL + K T Y V+ G +Q +E V +L + G+TPD ++Y ++
Sbjct: 149 LLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ 208
Query: 492 SFCKC-KDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550
+ +D + L QM L+ + +L+ LK + +
Sbjct: 209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQL 268
Query: 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581
V + +++ A+ +
Sbjct: 269 PPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.4 bits (173), Expect = 6e-13
Identities = 17/187 (9%), Positives = 45/187 (24%), Gaps = 4/187 (2%)
Query: 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470
P + + ++ A + + K +L A L
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149
Query: 471 LE---DMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527
L YN ++ + + ++ +L + L P +Y +
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209
Query: 528 LCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586
+ D + L + + + L + ++ +
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
Query: 587 SIRDYTK 593
+ +K
Sbjct: 270 PPVNTSK 276
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 8e-13
Identities = 24/179 (13%), Positives = 56/179 (31%), Gaps = 6/179 (3%)
Query: 76 QSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCL---MLKYGLHPD 132
++ A A L A +A L + +
Sbjct: 107 SLDVEQAPSGQHSQAQL--SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT 164
Query: 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA-WKVI 191
YN ++ G G+ +E + + G+ PD ++Y+ + Q +G + +
Sbjct: 165 LDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCL 224
Query: 192 QKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCK 250
+++ +G + VL+ + ++ K++ + S LL +
Sbjct: 225 EQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 71.0 bits (172), Expect = 8e-13
Identities = 25/236 (10%), Positives = 75/236 (31%), Gaps = 16/236 (6%)
Query: 297 NEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSL---IMSNCIQDVVLYNIMIDGY 353
+ ++S A + + A + + +YN ++ G+
Sbjct: 116 GQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGW 175
Query: 354 VKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVA-DARRLLDTIKLHGLEPS 412
+ G E V + + + ++P ++++ + + + + A R L+ + GL+
Sbjct: 176 ARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQ 235
Query: 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472
A+ ++ ++ + + P V + +++ + + +L
Sbjct: 236 ALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHL 295
Query: 473 DMYVIGVTPDQ------------ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP 516
+ + ++ ++ + K RK + L W L
Sbjct: 296 PLKTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEVKHARKTLKTLRDQWEKALCR 351
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 68.3 bits (165), Expect = 6e-12
Identities = 19/170 (11%), Positives = 44/170 (25%), Gaps = 4/170 (2%)
Query: 434 ALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSF 493
L P +++ + L ++ Q +
Sbjct: 78 CLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCC 137
Query: 494 CKCKDLRKAFQLLN---QMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNIS 550
L A LL T YN ++ G G K +L +++ ++
Sbjct: 138 LLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLT 197
Query: 551 LTKVAYTTIIKAHCAEGDVHKAM-TFFCQMVEKGFEISIRDYTKSFFCMM 599
++Y ++ + + QM ++G ++
Sbjct: 198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED 247
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 64.8 bits (156), Expect = 5e-11
Identities = 18/228 (7%), Positives = 56/228 (24%), Gaps = 39/228 (17%)
Query: 218 NVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLL---YEMEAVGLKPDLV 274
+++ + ++ A LL + L
Sbjct: 107 SLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD 166
Query: 275 TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSL 334
Y+ ++ G +Q + + + + ++P
Sbjct: 167 MYNAVMLGWARQGAFKELVYVLFMVKDAGLTP---------------------------- 198
Query: 335 IMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLY-RQLIEKRISPSIVTFNSLIYGFCKNGK 393
D++ Y + + ++ Q+ ++ + + L+ +
Sbjct: 199 -------DLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251
Query: 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMET 441
+ ++ T L P V + + + L ++T
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 49.4 bits (116), Expect = 4e-06
Identities = 25/181 (13%), Positives = 41/181 (22%), Gaps = 24/181 (13%)
Query: 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATY 521
Q A L + +P + +++ L Q L
Sbjct: 71 LSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRL 130
Query: 522 NILIDGLCVNGDLKNADCLLVSLQEH---NISLTKVAYTTIIKAHCAEGDVHKAMTFFCQ 578
+ L A LLV LT Y ++ +G +
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKEL------ 184
Query: 579 MVEKGFEISIRDYTKSFFCMMLSNGFPPDQE-ICEVMLIAFHQGGDLGSVFELAAVMIKS 637
M+ G PD + Q D G++ M +
Sbjct: 185 --------------VYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQE 230
Query: 638 G 638
G
Sbjct: 231 G 231
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.2 bits (185), Expect = 2e-14
Identities = 66/388 (17%), Positives = 115/388 (29%), Gaps = 39/388 (10%)
Query: 212 GYCQIGNV--EEGLK-LREVMLSQGFKLN---VIAYSVLLSSMCKSGRIDEALGLLYEME 265
+ G V E + R + L V+A + + L +L +
Sbjct: 40 KIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVL--CQ 97
Query: 266 AVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSF-AHGAILLGLCEKEM 323
A GL P V + G + V + + + + + ++P A + G E
Sbjct: 98 AHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGLTPEQVVAIASHDGGKQALET 155
Query: 324 ITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP-SIVTFN 382
+ + VV G L + + + Q ++P +V
Sbjct: 156 VQALLPVLCQAHGLTP-EQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPQQVVAIA 212
Query: 383 SLIYGFCKNGKVADARRLLDTIKLHGLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMET 441
S G V L + HGL P V + +QRLL +L
Sbjct: 213 SNGGGKQALETVQRL--LPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVL----C 266
Query: 442 KAIG--PTHV-TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQI-TYNTIIRSFCKCK 497
+A G P V G +Q + +L G+TP Q+ + +
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQ--AHGLTPQQVVAIASNGGGKQALE 324
Query: 498 DLRKAFQLLNQMWLHNLEPTSA-TYNILIDGLCVNGDLKNADCLLVSLQEHNISLT---K 553
+++ +L Q H L P G ++ + + LT
Sbjct: 325 TVQRLLPVLCQA--HGLTPQQVVAIASHDGGKQALETVQRL----LPVLCQAHGLTPEQV 378
Query: 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVE 581
VA + A V + + CQ
Sbjct: 379 VAIASNGGGKQALETVQRLLPVLCQAHG 406
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 41/275 (14%), Positives = 79/275 (28%), Gaps = 25/275 (9%)
Query: 132 DAFSYNILIHGLCIAGSMEEALE-FTNDMGRHGVEPD-AITYSILAKGFHLLSQISGAWK 189
+ G +++ L HG+ P + + G L +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLCQA---HGLTPQQVVAIASNGGGKQALETVQRLLP 263
Query: 190 VIQKLLIKGSDPD-IVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN---VIAYSVLL 245
V+ + G P +V G + V+ L + L Q L V+A +
Sbjct: 264 VLCQAH--GLTPQQVVAIASNSGGKQALETVQRLLPV----LCQAHGLTPQQVVAIASNG 317
Query: 246 SSMCKSGRIDEALGLLYEMEAVGLKPDL-VTYSILIRGLCKQDKVHKAIQLYNEMCSKRI 304
+ L +L +A GL P V + G + V + + + + + +
Sbjct: 318 GGKQALETVQRLLPVL--CQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQ--AHGL 373
Query: 305 SPN-SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363
+P A + G E + + VV G L + +
Sbjct: 374 TPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTP-EQVVAIASHDGGKQALETVQRLL 432
Query: 364 QLYRQLIEKRISP-SIVTFNSLIYGFCKNGKVADA 397
+ Q ++P +V S G +
Sbjct: 433 PVLCQAHG--LTPQQVVAIASNGGGRPALESIVAQ 465
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 41/253 (16%), Positives = 76/253 (30%), Gaps = 23/253 (9%)
Query: 128 GLHPD-AFSYNILIHGLCIAGSMEEALE-FTNDMGRHGVEPD-AITYSILAKGFHLLSQI 184
GL P + G +++ L HG+ P + + + G L +
Sbjct: 236 GLTPQQVVAIASNGGGKQALETVQRLLPVLCQA---HGLTPQQVVAIASNSGGKQALETV 292
Query: 185 SGAWKVIQKLLIKGSDPD-IVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN---VIA 240
V+ + G P +V G + V+ L +L Q L V+A
Sbjct: 293 QRLLPVLCQAH--GLTPQQVVAIASNGGGKQALETVQRLLP----VLCQAHGLTPQQVVA 346
Query: 241 YSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEM 299
+ + L +L +A GL P+ V + G + V + + + +
Sbjct: 347 IASHDGGKQALETVQRLLPVL--CQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQ- 403
Query: 300 CSKRISPN-SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358
+ ++P A + G E + Q VV G L +
Sbjct: 404 -AHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLT-PQQVVAIASNGGGRPALES 461
Query: 359 IGEAVQLYRQLIE 371
I + +
Sbjct: 462 IVAQLSRPDPALA 474
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 3e-12
Identities = 103/594 (17%), Positives = 178/594 (29%), Gaps = 48/594 (8%)
Query: 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSL---LYNLRHTDIMWDLYDDIKVSE 58
V + V+ + L + S L + +
Sbjct: 300 HGGGKQALETVQRLLPVLCQAHGLTPD-QVVAIASHDGGKQALETVQRLLPVLCQA-HGL 357
Query: 59 TPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAK 118
TP V + G +Q + L + G P V A L +
Sbjct: 358 TPDQVVAIASNGGGKQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGKQALETVQRL- 414
Query: 119 GLFCLMLKYGLHPD-AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD-AITYSILAK 176
L L +GL PD + G +++ L HG+ P + +
Sbjct: 415 -LPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQ--THGLTPAQVVAIASHDG 471
Query: 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL 236
G L + V+ + + +V I G + V+ L +L Q L
Sbjct: 472 GKQALETVQQLLPVLCQA-HGLTPDQVVAIASNIGGKQALATVQRLLP----VLCQAHGL 526
Query: 237 N---VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD-LVTYSILIRGLCKQDKVHKA 292
V+A + + L + +A GL PD +V + G + V +
Sbjct: 527 TPDQVVAIASNGGGKQALETVQRLL-PVLC-QAHGLTPDQVVAIASNGGGKQALETVQRL 584
Query: 293 IQLYNEMCSKRISPNSF-AHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMID 351
+ + + + ++ A + + G E + VV
Sbjct: 585 LPVLCQ--AHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAH-GLTPAQVVAIASHDG 641
Query: 352 GYVKLGNIGEAVQLYRQLIEKRISPS-IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLE 410
G L + + + Q ++P +V S G V L + HGL
Sbjct: 642 GKQALETVQRLLPVLCQAHG--LTPDQVVAIASNGGGKQALETVQRL--LPVLCQAHGLT 697
Query: 411 PS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ 469
V + +QRLL +L +A G T V I + E VQ
Sbjct: 698 QEQVVAIASNNGGKQALETVQRLLPVL----CQAHGLTP-DQVVAIASNGGGKQALETVQ 752
Query: 470 LLEDMY--VIGVTPDQI-TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526
L + G+TP Q+ + I + +++ +L Q L A + +
Sbjct: 753 RLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIGG 812
Query: 527 GLCVNGDLKNADCLLVSL-QEHNISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQ 578
L+ LL L Q H ++ + VA + I A V + + CQ
Sbjct: 813 ----KQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQ 862
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 53.9 bits (129), Expect = 1e-07
Identities = 49/244 (20%), Positives = 80/244 (32%), Gaps = 19/244 (7%)
Query: 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS-IVTFNSLIYGFCKNGKVADARR 399
VV G L + + + Q ++P+ +V S G +
Sbjct: 190 AQVVAIASNNGGKQALETVQRLLPVLCQAHG--LTPAQVVAIASHDGGKQALETMQRL-- 245
Query: 400 LLDTIKLHGLEPS-AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGL 458
L + HGL P V + + +QRLL +L +A G T V I
Sbjct: 246 LPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVL----CQAHGLTP-DQVVAIASH 300
Query: 459 CKQWKLQEAVQLLEDMY--VIGVTPDQI-TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515
+ E VQ L + G+TPDQ+ + + +++ +L Q H L
Sbjct: 301 GGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQA--HGLT 358
Query: 516 PTSA-TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574
P G ++ L V Q H ++ +V A V + +
Sbjct: 359 PDQVVAIASNGGGKQALETVQRL--LPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLP 416
Query: 575 FFCQ 578
CQ
Sbjct: 417 VLCQ 420
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 3e-08
Identities = 96/657 (14%), Positives = 181/657 (27%), Gaps = 245/657 (37%)
Query: 25 LDLKVSIQTYNSLLYNLRHTDIMWDLYDDIK-------VSETPRNVYTNS----IVI--D 71
+D + Y ++ DI+ D V + P+++ + I++ D
Sbjct: 7 MDFETGEHQY-------QYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 72 GLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHP 131
+ RL +L QE ++F ++ L
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKF------------------------------VEEVLRI 89
Query: 132 DAFSYNIL---IHGLCIAGSMEEAL-EFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187
+ Y L I SM + D + + AK +S++
Sbjct: 90 N---YKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV-------FAKYN--VSRLQPY 137
Query: 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSS 247
K+ Q LL +++ I G +L G K + +
Sbjct: 138 LKLRQALLELRPAKNVL-----IDG----------------VLGSG-K------TWVALD 169
Query: 248 MCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307
+C S ++ + + + L C +++ ++ +I PN
Sbjct: 170 VCLSYKVQCKM------------DFKIFW--LNLKNCNSP--ETVLEMLQKLLY-QIDPN 212
Query: 308 --SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQL 365
S + + + L + E R S NC+ +VL N VQ
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLN---------------VQ- 254
Query: 366 YRQLIEKRISPSIV-TFNSLIYGFCK------NGKVADARRLLDTIKLHGLEPSAVTYTT 418
+ FN CK +V D T + L+ ++T T
Sbjct: 255 ---------NAKAWNAFN----LSCKILLTTRFKQVTDFLSAATTTHIS-LDHHSMTLT- 299
Query: 419 FMNAYCEEGNIQRLLALLQEM-------ETKAIGPTHVTYTVVIKGLCK-------QWKL 464
++ LL + E P ++ +I + WK
Sbjct: 300 -------PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS---IIAESIRDGLATWDNWKH 349
Query: 465 QEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC---KDLRKAF--------------QLLN 507
+L TII S + RK F LL+
Sbjct: 350 VNCDKL----------------TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLS 393
Query: 508 QMWLHNLEPTSATYNILIDGLCVNGDL-KNADCLLVSLQEHNISLTKVAYTTIIKAHCA- 565
+W + + ++++ L + K +S+ +I L +K
Sbjct: 394 LIW---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISI--PSIYLE-------LKVKLEN 441
Query: 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE---ICEVMLIAFH 619
E +H+ +V+ + K+F S+ P I H
Sbjct: 442 EYALHR------SIVDH------YNIPKTFD----SDDLIPPYLDQYFYS--HIGHH 480
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 5e-08
Identities = 41/272 (15%), Positives = 87/272 (31%), Gaps = 21/272 (7%)
Query: 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS 199
+ GS ++ + + E D L + + + I+ S
Sbjct: 6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SS 61
Query: 200 DPDIVTYTVLICGYCQIGNVEEGLK-LREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258
P++ + + + L M N + S D AL
Sbjct: 62 APELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121
Query: 259 GLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS----FAHGAI 314
L++ + L ++ ++ L K D++ A + +M + ++ A +
Sbjct: 122 RTLHQGD------SLECMAMTVQILLKLDRLDLARKELKKM--QDQDEDATLTQLATAWV 173
Query: 315 LLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI 374
L E + +A F + C ++L N ++ G A + ++ ++K
Sbjct: 174 SLAA-GGEKLQDAYYIFQEMA-DKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD- 230
Query: 375 SPSIVTFNSLIYGFCKNGKVADA-RRLLDTIK 405
S T +L+ GK + R L +K
Sbjct: 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLK 262
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 9e-07
Identities = 36/232 (15%), Positives = 69/232 (29%), Gaps = 22/232 (9%)
Query: 147 GSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTY 206
L+ P+ + A+ S+ + + + + D T+
Sbjct: 48 RKYGVVLDEIKPSSA----PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTF 103
Query: 207 TVLICG-YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEME 265
++ Y N + L+ L QG L +A +V + + K R+D A L +M+
Sbjct: 104 LLMAASIYFYDQNPDAALRT----LHQGDSLECMAMTVQI--LLKLDRLDLARKELKKMQ 157
Query: 266 AVGLKPD-LVTYSILIRGLCKQ--DKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKE 322
D +T +K+ A ++ EM K + C
Sbjct: 158 D--QDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK---CSPTLLLLNGQAACHMA 212
Query: 323 M--ITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK 372
A + + L N ++ LG E Y ++
Sbjct: 213 QGRWEAAEGVLQEALDKDSGHPETLIN-LVVLSQHLGKPPEVTNRYLSQLKD 263
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 49.8 bits (120), Expect = 2e-06
Identities = 35/162 (21%), Positives = 61/162 (37%), Gaps = 10/162 (6%)
Query: 213 YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD 272
Q G+ E + + Q N +L S + R+D + A+ P
Sbjct: 9 EYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHF-ST-LAIKQNPL 65
Query: 273 LV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG--LCEKEMITEARM 329
L YS L ++ ++ +AI+ Y + R+ P+ F G I L L + A
Sbjct: 66 LAEAYSNLGNVYKERGQLQEAIEHYRH--ALRLKPD-FIDGYINLAAALVAAGDMEGAVQ 122
Query: 330 YFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371
+ S + N + + + + LG + EA Y + IE
Sbjct: 123 AYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE 163
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 41/236 (17%), Positives = 83/236 (35%), Gaps = 26/236 (11%)
Query: 146 AGSMEEALEFTNDMGRHGVEPD-AITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV 204
AG E A + R EPD +L+ ++ + + + +P +
Sbjct: 12 AGDFEAAERHCMQLWR--QEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLA 67
Query: 205 -TYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN---VIAYSVLLSSMCKSGRIDEALGL 260
Y+ L Y + G ++E ++ +L + Y L +++ +G ++ A+
Sbjct: 68 EAYSNLGNVYKERGQLQEAIE----HYRHALRLKPDFIDGYINLAAALVAAGDMEGAV-Q 122
Query: 261 LYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSF-AH---GAIL 315
Y A+ PDL S L L ++ +A Y + + PN A G +
Sbjct: 123 AYV-SALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK--AIETQPNFAVAWSNLGCVF 179
Query: 316 LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371
E A +F+ + + + Y + + + AV Y + +
Sbjct: 180 NAQGEIW---LAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS 231
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 29/168 (17%), Positives = 54/168 (32%), Gaps = 30/168 (17%)
Query: 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCS 301
L + E L E EA+ P + + ++D+ KAI+L +
Sbjct: 218 KLHKMREEGEEEGEGE-KLVE-EALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALE 275
Query: 302 KRISPNS-FAHGAILLGLCEK---------------------EMITEARMYFDSLIMSNC 339
PN+ + H +G C + E+I A + +N
Sbjct: 276 --YIPNNAYLH--CQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN- 330
Query: 340 IQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYG 387
+ +I+ + EA +++ K ++P L YG
Sbjct: 331 DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYG 378
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 52/349 (14%), Positives = 104/349 (29%), Gaps = 75/349 (21%)
Query: 133 AFSYNILIHGLCIAGSMEEALE--------FTNDMGRHGVEPDAITYSILAKGFHLLSQI 184
A N+L + + G E ALE + +T+ A ++ + ++
Sbjct: 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRL 110
Query: 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVL 244
S + K+ C+ + ++ E+ +G+
Sbjct: 111 SDVQIYVDKVKH----------------VCEKFSSPYRIESPELDCEEGWTRL------- 147
Query: 245 LSSMCKSGRIDEALGLLYEMEAVGLKPDLVT----YSILIRGLCKQDKVHKAIQLYNEMC 300
C + + A +E +A+ KP +I L AI +
Sbjct: 148 ---KCGGNQNERAKV-CFE-KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ-- 200
Query: 301 SKRISPNSFAHGAILLGLC------EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV 354
+ R++P+ + +LL L E E E + + + Y
Sbjct: 201 AIRLNPD-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYR 258
Query: 355 KLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY---GFCKNGKV-----ADARRLLDTIKL 406
+ +A++L ++ +E P+ N+ ++ G C KV + KL
Sbjct: 259 RKDEPDKAIELLKKALE--YIPN----NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKL 312
Query: 407 HGLEPSAVTYT--------TFMNAYCEEGNIQRLLALLQEMET---KAI 444
L AV + ++ L +E E K
Sbjct: 313 LELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEF 361
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 52/344 (15%), Positives = 106/344 (30%), Gaps = 76/344 (22%)
Query: 134 FSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQK 193
F++N++ + E+ + + + E A ++LA HL Q A + ++K
Sbjct: 20 FTWNLMEGENSL-DDFEDKVFYRTEFQNR--EFKATMCNLLAYLKHLKGQNEAALECLRK 76
Query: 194 --LLIKGSDPD------IVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLL 245
LI+ D +VT+ Y +G + + + + + Y +
Sbjct: 77 AEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVD-KVKHVCEKFSSPYRIES 135
Query: 246 SSM----------CKSGRIDEALGLLYEMEAVGLKPDLVT----YSILIRGLCKQDKVHK 291
+ C + + A +E +A+ KP +I L
Sbjct: 136 PELDCEEGWTRLKCGGNQNERAKVC-FE-KALEKKPKNPEFTSGLAIASYRLDNWPPSQN 193
Query: 292 AIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMID 351
AI + + R++P+ + +LL L +M
Sbjct: 194 AIDPLRQ--AIRLNPD-NQYLKVLLALKLHKM---------------------------- 222
Query: 352 GYVKLGNIGEAVQLYRQLIEKRISPS-IVTFNSLIYGFCKNGKVADARRLLDT-IKLHGL 409
+ GE +L + +E +P S + + + A LL ++
Sbjct: 223 -REEGEEEGEGEKLVEEALE--KAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-- 277
Query: 410 EP-SAVTYTTFMNAYCEEG--------NIQRLLALLQEMETKAI 444
P +A + Y + N L E+ A+
Sbjct: 278 -PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAV 320
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 13/126 (10%), Positives = 26/126 (20%), Gaps = 13/126 (10%)
Query: 251 SGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSF 309
+ L L AV +P + +L + P
Sbjct: 2 TADGPRELLQL--RAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQR--GLALHPG-H 56
Query: 310 AHGAILLGLCEKEMITEARMYFDSLIMSNCIQ----DVVLYNIMIDGYVKLGNIGEAVQL 365
LG R ++++ + + G A
Sbjct: 57 PEAVARLGRVRWTQ---QRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAA 113
Query: 366 YRQLIE 371
Y + +
Sbjct: 114 YTRAHQ 119
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 2e-04
Identities = 34/226 (15%), Positives = 62/226 (27%), Gaps = 32/226 (14%)
Query: 167 DAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLR 226
A+ L + + A ++Q+ + P +Y L N +E K
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFK-- 297
Query: 227 EVMLSQGFKLN---VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRG 282
+ LN Y A ++ +A L P+ V Y L
Sbjct: 298 --FFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK-EDFQ-KAQSLNPENVYPYIQLACL 353
Query: 283 LCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG--LCEKEMITEARMYFDSLI----- 335
L KQ K ++ +NE +K P L ++ A +D
Sbjct: 354 LYKQGKFTESEAFFNE--TKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEV 410
Query: 336 ----------MSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE 371
+ + + + A++L + E
Sbjct: 411 QEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 5e-04
Identities = 25/129 (19%), Positives = 43/129 (33%), Gaps = 11/129 (8%)
Query: 249 CKSGRIDEALGLLYEMEAVGLKPDL-VTYSILIRGLC--KQDKVHKAIQLYNEMCSKRIS 305
+ R +EA L E L P+ + L GL + K +A + + + S R++
Sbjct: 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENL--GLVSLQMKKPAQAKEYFEK--SLRLN 171
Query: 306 PNSFAHGAILLGLCEKEM--ITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363
N A+ + + AR Y+D Q+ + I + A
Sbjct: 172 RN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAA 229
Query: 364 QLYRQLIEK 372
QL
Sbjct: 230 SYGLQLKRL 238
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 8e-04
Identities = 22/137 (16%), Positives = 47/137 (34%), Gaps = 22/137 (16%)
Query: 252 GRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNS-- 308
G+ AL + + LK D L KQ K+ +A + + + +P+
Sbjct: 51 GKSKAALPD-LT-KVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKK--VLKSNPSEQE 106
Query: 309 --FAHGAIL------------LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV 354
A ++ L + T A + D ++ + D L + + ++
Sbjct: 107 EKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFI 165
Query: 355 KLGNIGEAVQLYRQLIE 371
K G +A+ + +
Sbjct: 166 KEGEPRKAISDLKAASK 182
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.98 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.95 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.92 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.89 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.88 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.88 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.87 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.86 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.86 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.85 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.83 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.81 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.81 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.81 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.81 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.8 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.78 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.78 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.77 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.76 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.74 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.72 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.7 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.7 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.69 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.69 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.68 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.68 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.67 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.66 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.66 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.65 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.65 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.64 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.63 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.61 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.6 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.58 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.56 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.55 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.54 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.52 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.51 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.49 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.48 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.47 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.47 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.47 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.47 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.47 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.44 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.43 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.4 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.4 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.38 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.37 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.36 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.36 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.36 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.31 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.28 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.24 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.24 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.23 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.23 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.23 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.23 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.21 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.2 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.18 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.17 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.17 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.17 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.17 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.16 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.15 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 99.14 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.14 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.13 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.12 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.1 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.09 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.09 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.08 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.08 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.08 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.05 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.04 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.03 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.02 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.01 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.01 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.99 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.99 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.97 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.95 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.92 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.88 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.87 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.85 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.84 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.84 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.84 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.84 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.84 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.83 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.83 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.82 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.8 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.79 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.79 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.78 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.78 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.78 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.77 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.76 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.76 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.75 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.74 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.73 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.72 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.72 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.72 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.71 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.7 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.69 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.69 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.69 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.67 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.66 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.66 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.62 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.61 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.61 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.6 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.6 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.59 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.58 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.58 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.58 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.58 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.54 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.51 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.49 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.49 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.48 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.47 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.46 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.46 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.45 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.44 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.42 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.42 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.4 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.4 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.37 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.34 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.33 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.32 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.29 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.29 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.2 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.19 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.16 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.15 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.14 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.13 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.12 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.09 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.01 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.0 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.92 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.91 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.87 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.83 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.81 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.78 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.73 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.69 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.68 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.58 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.55 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 97.38 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 97.32 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 97.32 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.31 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.24 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.16 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.11 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.08 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 97.08 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.06 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.06 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 96.96 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.92 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.85 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.76 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.65 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 96.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.32 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.25 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.15 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 96.05 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.89 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.31 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.3 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 95.09 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 94.56 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 94.43 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.43 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 94.35 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 94.11 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 93.05 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 91.83 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.53 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.4 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 91.07 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 91.05 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 90.92 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.85 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 90.52 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 90.0 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 89.98 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 89.09 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.83 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.74 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 86.34 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 85.74 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 85.57 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 85.51 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 84.92 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.54 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 82.37 | |
| 1zbp_A | 273 | Hypothetical protein VPA1032; alpha-beta protein, | 81.92 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 80.79 | |
| 4a1g_A | 152 | Mitotic checkpoint serine/threonine-protein kinas; | 80.63 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 80.32 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-41 Score=352.16 Aligned_cols=507 Identities=12% Similarity=0.033 Sum_probs=384.5
Q ss_pred hcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 75 QQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALE 154 (647)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 154 (647)
..|....+...+..+. .++...|..++..+.+.|++++|..+|+++... .|+..++..++.+|.+.|++++|..
T Consensus 65 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 65 TDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3444444444444332 245667777777777777777777777777754 4566777777777777777777777
Q ss_pred HHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc---------------CCCCCcchHHHHHHHHHhcCCh
Q 006396 155 FTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK---------------GSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
+|+.+.. .+++..+++.++.+|.+.|++++|.++|+++... +..++..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDL--YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCG--GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhc--cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 7777654 3567777777777777777777777777742211 1122456788888888888888
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH--HH-HHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL--GL-LYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLY 296 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 296 (647)
++|.++|+++.+.+.. +...+..+...+...+..+.+. .+ +..+...+..+...+|+.++..|.+.|++++|.++|
T Consensus 217 ~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 295 (597)
T 2xpi_A 217 DRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295 (597)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHH
Confidence 8888888888776422 3444555554443332222111 11 334443333344455666677788888888888888
Q ss_pred HHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 006396 297 NEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP 376 (647)
Q Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 376 (647)
+++.+. +++..++..++..+.+.|++++|..+|+.+...+ +.+..++..++.++.+.|++++|..+++++.+.. +.
T Consensus 296 ~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~ 371 (597)
T 2xpi_A 296 SSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PE 371 (597)
T ss_dssp HTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TT
T ss_pred HHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cc
Confidence 888765 5677888888888888888888888888888765 3467778888999999999999999999988654 34
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK 456 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 456 (647)
+..++..++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|..++.
T Consensus 372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 67788889999999999999999999988753 4568899999999999999999999999998764 457888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCCC--HHHHHHHHHHHhh
Q 006396 457 GLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEPT--SATYNILIDGLCV 530 (647)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~ 530 (647)
+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~ 528 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRK 528 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHH
Confidence 9999999999999999999864 567889999999999999999999999999874 55777 7899999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
.|++++|.+.++++.+.+ +.+..+|..++.+|...|++++|.+.++++++.. |.+..+
T Consensus 529 ~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~ 586 (597)
T 2xpi_A 529 LKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS---------------------PNEIMA 586 (597)
T ss_dssp TTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC---------------------CCChHH
Confidence 999999999999999864 5578899999999999999999999999999987 778888
Q ss_pred HHHHHHHHH
Q 006396 611 CEVMLIAFH 619 (647)
Q Consensus 611 ~~~l~~~~~ 619 (647)
+..++.+|.
T Consensus 587 ~~~l~~~~~ 595 (597)
T 2xpi_A 587 SDLLKRALE 595 (597)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHHHHh
Confidence 888887764
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-41 Score=347.46 Aligned_cols=496 Identities=9% Similarity=-0.025 Sum_probs=407.3
Q ss_pred HHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006396 108 YCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187 (647)
Q Consensus 108 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (647)
+...|....+...+..+. .++...|+.++..|.+.|++++|..+|+++.. ..|+..++..++.++...|++++|
T Consensus 63 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A 136 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARA 136 (597)
T ss_dssp -----------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccccCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHH
Confidence 344555666666655443 46788999999999999999999999999986 467889999999999999999999
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhC---------------CCCcCcccHHHHHHHHHhcC
Q 006396 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQ---------------GFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g 252 (647)
..+|+++... .++..+++.++..|.+.|++++|.++|+++... +...+..+|+.++.+|.+.|
T Consensus 137 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 214 (597)
T 2xpi_A 137 KCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLS 214 (597)
T ss_dssp HHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcC
Confidence 9999998654 568889999999999999999999999853222 12335778999999999999
Q ss_pred ChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHH--H-HHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHH
Q 006396 253 RIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQ--L-YNEMCSKRISPNSFAHGAILLGLCEKEMITEARM 329 (647)
Q Consensus 253 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 329 (647)
++++|.+.|+++.+.+.. +...+..+...+...+..+.+.. + +..+...+..+...++..++..|.+.|++++|.+
T Consensus 215 ~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 215 NFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 999999999999886422 45556666555544433222211 1 3344333333333445555777889999999999
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006396 330 YFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL 409 (647)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 409 (647)
+|+.+... +++..+++.++..|.+.|++++|..+|+++.+.++. +..++..++.++...|++++|..+++.+....
T Consensus 294 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~- 369 (597)
T 2xpi_A 294 YLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH- 369 (597)
T ss_dssp HHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-
T ss_pred HHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-
Confidence 99998875 578999999999999999999999999999987644 78899999999999999999999999998653
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
+.+..+++.++..|.+.|++++|..+|+++.+.. +.+..+|+.++.++.+.|++++|.++|+++.+.+ +.+..++..+
T Consensus 370 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l 447 (597)
T 2xpi_A 370 PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFL 447 (597)
T ss_dssp TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHH
Confidence 6678999999999999999999999999998753 4568899999999999999999999999999875 6688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC--HHHHHHHHHHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT--KVAYTTIIKAH 563 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~--~~~~~~l~~~~ 563 (647)
+.+|.+.|++++|.++|+++.+.. +.++.+|+.++.+|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|
T Consensus 448 ~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~ 526 (597)
T 2xpi_A 448 GMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAY 526 (597)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHH
Confidence 999999999999999999999842 347899999999999999999999999999875 55676 67999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|++++|++.++++.+.+ |.+..+|..++.+|.+.|++++|.+.++++++.+|.
T Consensus 527 ~~~g~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~ 582 (597)
T 2xpi_A 527 RKLKMYDAAIDALNQGLLLS---------------------TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPN 582 (597)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHhcCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC
Confidence 99999999999999999987 778999999999999999999999999999997653
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.5e-28 Score=236.55 Aligned_cols=382 Identities=15% Similarity=0.074 Sum_probs=252.8
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRID 255 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 255 (647)
..+.+.|++++|.+.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+++
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~ 84 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 3444555555555555555443111 22333444444555555555555555554432 223444555555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHH
Q 006396 256 EALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLI 335 (647)
Q Consensus 256 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 335 (647)
+|...|+++.... +.+...|..+..++...|++++|.+.|+++.+
T Consensus 85 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~---------------------------------- 129 (388)
T 1w3b_A 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQ---------------------------------- 129 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHH----------------------------------
T ss_pred HHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------------------
Confidence 5555555554431 11233444555555555555555555555443
Q ss_pred HcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 006396 336 MSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVT 415 (647)
Q Consensus 336 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 415 (647)
.. +.+...+..+...+...|++++|.+.|+++.+..+. +..++..+...+...|++++|...|+++...+ +.+...
T Consensus 130 -~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 130 -YN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp -HC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred -hC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 32 223445555666667777777777777777665322 45667777777777777777777777777653 445667
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
+..+...+...|++++|...+++..... +.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~ 283 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKE 283 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHH
Confidence 7777778888888888888888777653 3356777888888888888888888888888754 4556778888888888
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
.|++++|...++++.+.. +.+..++..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|+..
T Consensus 284 ~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~ 361 (388)
T 1w3b_A 284 KGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMH 361 (388)
T ss_dssp HSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 888888888888888742 4467888888888888899999998888888742 44566888888888899999999999
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
++++++.. |....+|..++.++...|+
T Consensus 362 ~~~a~~~~---------------------p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 362 YKEAIRIS---------------------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHTTC---------------------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHhhC---------------------CCCHHHHHhHHHHHHHccC
Confidence 99888766 6678888888888877664
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-28 Score=237.31 Aligned_cols=378 Identities=17% Similarity=0.050 Sum_probs=248.2
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHH----hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLY----NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS 77 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 77 (647)
++..+.+.|++++|...++++++.. |+......++. ..|+++.|...++.++...+ .++.+|..++.++...|
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p-~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP-LLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHHHHHHHHHHCC
Confidence 5677888888888888888888764 44333333333 67888888888888776444 66777888888888888
Q ss_pred ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 78 RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTN 157 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 157 (647)
++++|+..|+++....+ .+..++..++.++.+.|++++|...|+++.+.. +.+...+..+...+...|++++|.+.|+
T Consensus 82 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp CHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCc-chHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 88888888888876542 245577788888888888888888888887764 3445566777777777888888888888
Q ss_pred HHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcC
Q 006396 158 DMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLN 237 (647)
Q Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 237 (647)
++.+.. +.+..+|..+...+...|++++|...|+++...++. +...+..+...+...|++++|...++........ +
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~ 236 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-H 236 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-C
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-C
Confidence 877652 345677777777777778888888877777765322 3456666777777777777777777777665322 4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 006396 238 VIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLG 317 (647)
Q Consensus 238 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 317 (647)
..++..+..++...|++++|...|+++.+.+ +.+..+|..+...+.+.|++++|...|+++.+.. +
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p------------ 302 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P------------ 302 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-c------------
Confidence 5566667777777777777777777776653 2234566666666777777777777776666542 2
Q ss_pred HhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHH
Q 006396 318 LCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADA 397 (647)
Q Consensus 318 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 397 (647)
.+..++..+...+...|++++|...++++.+.. +.+..++..+..++.+.|++++|
T Consensus 303 -----------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 358 (388)
T 1w3b_A 303 -----------------------THADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEA 358 (388)
T ss_dssp -----------------------TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHH
T ss_pred -----------------------ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 234445555555555555555555555555432 22344555555555555555555
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 006396 398 RRLLDTIKLHGLEPSAVTYTTFMNAYCEE 426 (647)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 426 (647)
...++++.+.. +.+...+..+...+...
T Consensus 359 ~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 359 LMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 55555555432 22344455555444443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.8e-28 Score=237.59 Aligned_cols=201 Identities=18% Similarity=0.247 Sum_probs=127.8
Q ss_pred HHHHHHHCCCCCCcc-chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---------HHHHHH
Q 006396 365 LYRQLIEKRISPSIV-TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN---------IQRLLA 434 (647)
Q Consensus 365 ~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~~ 434 (647)
+.+++.+.+..+.+. .++.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+. .++|.+
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~ 91 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFD 91 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHH
Confidence 334444443333222 3555566666666666666666666666666666666666666654433 466677
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 435 LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
+|++|...|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+
T Consensus 92 lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~ 171 (501)
T 4g26_A 92 IFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEV 171 (501)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred CCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 515 EPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
.||..+|+.|+.+|++.|++++|.+++++|.+.|..|+..||..+...+..
T Consensus 172 ~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 172 VPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 777777777777777777777777777777776677777777766666554
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=6.3e-28 Score=237.84 Aligned_cols=204 Identities=15% Similarity=0.200 Sum_probs=160.6
Q ss_pred HHHHHHHhhcCCCCcCHH-hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC---------HHH
Q 006396 82 AILFLQETAGKEFGPSVV-SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS---------MEE 151 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 151 (647)
+..+.+++.+.+..+.+. .++.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+. .++
T Consensus 9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 344555555555444443 5777888888888888888888888888888888888888888876554 577
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
|.++|++|.+.|+.||..+|++++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|+.|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc
Q 006396 232 QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK 285 (647)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 285 (647)
.|+.||..+|+.++.+|++.|+.++|.++|++|.+.|..|+..||+.++..++.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888887765
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-24 Score=221.60 Aligned_cols=458 Identities=9% Similarity=-0.055 Sum_probs=293.9
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+...+..+...|++++|+..|++++... |+..++..++.++.+.|++++|...++++++.+ +.+..++..++.+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence 3456666777777777777777777776643 466677777777777777777777777777654 4455666777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEG 222 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 222 (647)
+...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+......-..
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----------- 150 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKE----------- 150 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhH-----------
Confidence 777777777777777776653 23333333333333332222222222222211111111110000000
Q ss_pred HHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc---cCCHHHHHHHHHHH
Q 006396 223 LKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK---QDKVHKAIQLYNEM 299 (647)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 299 (647)
. .......|+.... ..+.......... .....+.+...+......+.. .|++++|...++++
T Consensus 151 --~---~~~~~~~~~~~~~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 151 --R---KDKQENLPSVTSM----ASFFGIFKPELTF------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHH----HHHHTTSCCCCCC------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred --H---HhhccCCchhHHH----HHHHhhcCHHHHH------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 0 0000000111000 0010000000000 000001123333333443333 67777777777776
Q ss_pred Hh-----CCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 006396 300 CS-----KRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI 374 (647)
Q Consensus 300 ~~-----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 374 (647)
.+ ....|+.... .+.+...+..+...+...|++++|...++++.+..+
T Consensus 216 ~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~ 268 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKL---------------------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFP 268 (514)
T ss_dssp HHHHHHHTTTSTTCHHH---------------------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCC
T ss_pred HHHhhhhhccCcccccc---------------------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCc
Confidence 65 2112221100 012455677788888899999999999999887654
Q ss_pred CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 375 SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVV 454 (647)
Q Consensus 375 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 454 (647)
. ...+..+..++...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+
T Consensus 269 ~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 344 (514)
T 2gw1_A 269 R--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQL 344 (514)
T ss_dssp C--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHH
T ss_pred c--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHH
Confidence 3 7777888888999999999999999888764 4567788888899999999999999999988764 3456778888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHh
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT----SATYNILIDGLC 529 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~ 529 (647)
...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. -.++ ...+..++.++.
T Consensus 345 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 423 (514)
T 2gw1_A 345 ACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLT 423 (514)
T ss_dssp HHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHh
Confidence 889999999999999999998864 5567788889999999999999999999988721 1111 348889999999
Q ss_pred h---cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 530 V---NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 530 ~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. .|++++|...++++.+.. +.+..++..++.++...|++++|...++++++..
T Consensus 424 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 479 (514)
T 2gw1_A 424 RNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLA 479 (514)
T ss_dssp TSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence 9 999999999999999863 4567788999999999999999999999999987
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.2e-25 Score=226.82 Aligned_cols=451 Identities=8% Similarity=-0.034 Sum_probs=315.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
...+......+.+.|++++|...|+++.+.+ |+...|..+..++...|++++|.+.++++.+.++. +..++..+..+
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~ 82 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASA 82 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHH
Confidence 4456667777778888888888888887753 57777777888888888888888888877766322 44567777777
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHH
Q 006396 213 YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKA 292 (647)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 292 (647)
+...|++++|...|+.+...+. ++......++..+........+.+.+..+...+..|+...+.........
T Consensus 83 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~------- 154 (514)
T 2gw1_A 83 NEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK------- 154 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------------
T ss_pred HHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh-------
Confidence 7778888888888877777643 23344444444444433333333333333333222222211110000000
Q ss_pred HHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh---cCCHHHHHHHHHHH
Q 006396 293 IQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK---LGNIGEAVQLYRQL 369 (647)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~a~~~~~~~ 369 (647)
....|........+..+...... .....+.+...+......+.. .|+++.|...++++
T Consensus 155 ---------~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 215 (514)
T 2gw1_A 155 ---------QENLPSVTSMASFFGIFKPELTF----------ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKA 215 (514)
T ss_dssp -----------CCCCHHHHHHHHTTSCCCCCC----------SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHH
T ss_pred ---------ccCCchhHHHHHHHhhcCHHHHH----------HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHH
Confidence 00111111111111000000000 000002234455555555554 89999999999998
Q ss_pred HH-----CCC--------CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006396 370 IE-----KRI--------SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALL 436 (647)
Q Consensus 370 ~~-----~~~--------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (647)
.+ ... +.+..++..+...+...|++++|...++.+.... |+...+..+...+...|++++|...+
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~ 293 (514)
T 2gw1_A 216 ARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYF 293 (514)
T ss_dssp HHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHH
T ss_pred HHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 87 311 1234567788889999999999999999998864 33888899999999999999999999
Q ss_pred HHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC
Q 006396 437 QEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP 516 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p 516 (647)
+.+.... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.
T Consensus 294 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~ 370 (514)
T 2gw1_A 294 DKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PE 370 (514)
T ss_dssp HHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-cc
Confidence 9998764 4467788899999999999999999999999864 5567889999999999999999999999999842 33
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC------HHHHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCccc
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT------KVAYTTIIKAHCA---EGDVHKAMTFFCQMVEKGFEIS 587 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~ 587 (647)
+...+..++.++...|++++|...++++.+.. +.+ ..++..++.++.. .|++++|...++++++..
T Consensus 371 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~---- 445 (514)
T 2gw1_A 371 APEVPNFFAEILTDKNDFDKALKQYDLAIELE-NKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD---- 445 (514)
T ss_dssp CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh-hccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC----
Confidence 57889999999999999999999999998742 112 3388999999999 999999999999999987
Q ss_pred chhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 588 IRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 588 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..++..++.++.+.|++++|.+.++++++.++.
T Consensus 446 -----------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 446 -----------------PRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp -----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred -----------------cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 778999999999999999999999999999987653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-23 Score=213.70 Aligned_cols=439 Identities=11% Similarity=0.046 Sum_probs=294.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHH
Q 006396 133 AFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICG 212 (647)
Q Consensus 133 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 212 (647)
...+..+...+.+.|++++|.+.|+++.+.. +.+...|..+..++...|++++|.+.++++...++. +..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD-HSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence 3456666667777777777777777776652 346666777777777777777777777776665322 44556666666
Q ss_pred HHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHhhHHHHHHHHHccCCHH
Q 006396 213 YCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGL--KPDLVTYSILIRGLCKQDKVH 290 (647)
Q Consensus 213 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 290 (647)
+...|++++|.+.|+ ..... |+ .....+..+...+....|...++++..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~--~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLN--GD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHH-HHhcC--CC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 667777777777665 22221 11 111223333344444556666665543210 000011122233333344444
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH--------HHhcCCHHHH
Q 006396 291 KAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDG--------YVKLGNIGEA 362 (647)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~a 362 (647)
.+...+..... .+. .+. .....+... ....|++++|
T Consensus 178 ~~~~~~~~~~~----~~~-~~~-------------------------------~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 178 LEVSSVNTSSN----YDT-AYA-------------------------------LLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp HHHHTSCCCCS----SCS-SHH-------------------------------HHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred HHHHHHhhccc----ccc-HHH-------------------------------HHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 33322222111 110 000 011111111 1223577888
Q ss_pred HHHHHHHHHCCCCCCc-------cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 006396 363 VQLYRQLIEKRISPSI-------VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLAL 435 (647)
Q Consensus 363 ~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 435 (647)
..+++++.+..+. +. .++..+...+...|++++|...++.+... .|+...+..+...+...|++++|...
T Consensus 222 ~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~ 298 (537)
T 3fp2_A 222 TDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKF 298 (537)
T ss_dssp HHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHH
T ss_pred HHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHH
Confidence 8888888765332 22 24556667788889999999999998875 45578888888889999999999999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 436 LQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 436 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
++.+.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..+++++.+.. +
T Consensus 299 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~ 375 (537)
T 3fp2_A 299 FQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-P 375 (537)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred HHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 99988764 4567788999999999999999999999999864 5567888999999999999999999999999842 3
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI-----SLTKVAYTTIIKAHCAE----------GDVHKAMTFFCQMV 580 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~ 580 (647)
.+...+..++.++...|++++|...++++.+... ......+...+.++... |++++|+..+++++
T Consensus 376 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 455 (537)
T 3fp2_A 376 TLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKAC 455 (537)
T ss_dssp TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHH
Confidence 3578899999999999999999999999986420 11122355566778888 99999999999999
Q ss_pred HcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 581 EKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
+.. |.+..++..++.+|.+.|++++|.+.++++++..+..
T Consensus 456 ~~~---------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 495 (537)
T 3fp2_A 456 ELD---------------------PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTM 495 (537)
T ss_dssp HHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--C
T ss_pred HhC---------------------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc
Confidence 987 7789999999999999999999999999999876543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-23 Score=210.76 Aligned_cols=432 Identities=12% Similarity=0.047 Sum_probs=236.2
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+..++..+...|++++|+..|++++...+ .++.++..++.++.+.|++++|...|+++++.+ +.+..++..+..+
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDP-NEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 35677778888888888888888888887653 367788888888888888888888888888765 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCC--CCCcchHHHHHHHHHhcCChH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGS--DPDIVTYTVLICGYCQIGNVE 220 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 220 (647)
+...|++++|...|+.+ .. .|+ .....+..+...+....+...++.+..... .+........+..+....+.+
T Consensus 103 ~~~~g~~~~A~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVL-SL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH 177 (537)
T ss_dssp HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred HHHcCCHHHHHHHHHHH-hc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence 88888888888888633 22 222 222223344455556677788877755411 111122233444455555555
Q ss_pred HHHHHHHHHHhCCCCcCcc-cHHHHHHHHHh--------cCChhHHHHHHHHHHHCCCCCC--------HhhHHHHHHHH
Q 006396 221 EGLKLREVMLSQGFKLNVI-AYSVLLSSMCK--------SGRIDEALGLLYEMEAVGLKPD--------LVTYSILIRGL 283 (647)
Q Consensus 221 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~--------~~~~~~l~~~~ 283 (647)
.+...+...... .+... ....+...+.. .|++++|..+++++.+. .|+ ..++..+...+
T Consensus 178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~ 253 (537)
T 3fp2_A 178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH 253 (537)
T ss_dssp HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence 554433322211 11100 12222222211 24667777777777654 222 12345555566
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHH
Q 006396 284 CKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAV 363 (647)
Q Consensus 284 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 363 (647)
...|++++|...++++... .|+...+..+...+...|++++|...++.+.... +.+..++..+...+...|++++|.
T Consensus 254 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 330 (537)
T 3fp2_A 254 FLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK 330 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence 6667777777777776654 3334455555555566666666666666655543 234555566666666666666666
Q ss_pred HHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 364 QLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
..++++.+..+. +...+..+..++...|++++|...++.+.... +.+...+..+...+...|++++|...|+.+.+..
T Consensus 331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 666666554322 34455555555556666666666665555432 3334455555555555555555555555544321
Q ss_pred -----CCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 444 -----IGPTHVTYTVVIKGLCKQ----------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQ 508 (647)
Q Consensus 444 -----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 508 (647)
.......+......+... |++++|...++++.+.. +.+...+..+..+|...|++++|...|++
T Consensus 409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 487 (537)
T 3fp2_A 409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED 487 (537)
T ss_dssp HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 001111122223333333 55555555555555432 33344445555555555555555555555
Q ss_pred HHh
Q 006396 509 MWL 511 (647)
Q Consensus 509 ~~~ 511 (647)
+.+
T Consensus 488 al~ 490 (537)
T 3fp2_A 488 SAI 490 (537)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-22 Score=202.82 Aligned_cols=349 Identities=12% Similarity=0.038 Sum_probs=228.7
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
+...+..++..+.+.|++++|...|+++.+.. +.+...|..+..++...|++++|+..|+++.+.+ +.+...+..+..
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 102 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH 102 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence 55566677777777777777777777776542 3356666777777777777777777777776642 223344444455
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCIQDV---VLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK 393 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 393 (647)
.+...|++++|...|+.+.... +.+. ..+..+...+... .+..+...+...|+
T Consensus 103 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~~ 158 (450)
T 2y4t_A 103 LLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSGD 158 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcCC
Confidence 5555555555555555554432 1122 3333332221000 01122334666777
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLED 473 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 473 (647)
+++|...++.+.... +.+...+..+..+|...|++++|...|+.+.+.. +.+..++..+...+...|++++|...+++
T Consensus 159 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 159 YTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777777776543 4456677777777777777777777777776543 34566777777777777777777777777
Q ss_pred HHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHhhcCChhh
Q 006396 474 MYVIGVTPDQITYNTI------------IRSFCKCKDLRKAFQLLNQMWLHNLEPT-----SATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 474 ~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~ 536 (647)
+.+.. +.+...+..+ +..+...|++++|..+|+++.+ ..|+ ...+..++.++.+.|++++
T Consensus 237 ~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~ 313 (450)
T 2y4t_A 237 CLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVE 313 (450)
T ss_dssp HHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHH
Confidence 77643 3334444333 7788888999999999998887 3444 4477888888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
|...++++.+.. +.+..+|..++.+|...|++++|...++++++.. |.+..++..++.
T Consensus 314 A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~ 371 (450)
T 2y4t_A 314 AIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN---------------------ENDQQIREGLEK 371 (450)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS---------------------SSCHHHHHHHHH
T ss_pred HHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC---------------------cchHHHHHHHHH
Confidence 999999988753 4467788889999999999999999999998866 556677776663
Q ss_pred H------------HHcCC-----CHHHHHHHHHH-HHhCC
Q 006396 617 A------------FHQGG-----DLGSVFELAAV-MIKSG 638 (647)
Q Consensus 617 ~------------~~~~g-----~~~~A~~~~~~-~~~~~ 638 (647)
+ |...| +.+++.+.+++ +++..
T Consensus 372 ~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~ 411 (450)
T 2y4t_A 372 AQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH 411 (450)
T ss_dssp HHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC
T ss_pred HHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC
Confidence 3 44444 55667777776 55543
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-22 Score=197.24 Aligned_cols=384 Identities=11% Similarity=0.045 Sum_probs=246.1
Q ss_pred HHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHh
Q 006396 152 ALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLS 231 (647)
Q Consensus 152 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 231 (647)
+...+.+.... .+.+...+..++..+...|++++|..+|+++..... .+..++..+...+...|++++|...++.+.+
T Consensus 11 ~~~~~~~~~~~-~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 88 (450)
T 2y4t_A 11 VDLGTENLYFQ-SMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQ 88 (450)
T ss_dssp -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 33444444433 244566677777777777777777777777766522 2456667777777777777777777777776
Q ss_pred CCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-H---hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC
Q 006396 232 QGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPD-L---VTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPN 307 (647)
Q Consensus 232 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 307 (647)
.+.. +...+..++.++...|++++|...|+++.+. .|+ . ..+..++..+...+
T Consensus 89 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~-------------------- 145 (450)
T 2y4t_A 89 LKMD-FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQR-------------------- 145 (450)
T ss_dssp HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHH--------------------
T ss_pred cCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHH--------------------
Confidence 6422 4556667777777777777777777777664 233 2 34444433311110
Q ss_pred cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHH
Q 006396 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYG 387 (647)
Q Consensus 308 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 387 (647)
+......+...|++++|...++.+.... +.+...+..+..+|...|++++|...|+++.+..+ .+..++..+..+
T Consensus 146 ---~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~ 220 (450)
T 2y4t_A 146 ---LRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTL 220 (450)
T ss_dssp ---HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHH
T ss_pred ---HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence 1112233455666666666666666543 34566677777777777777777777777766532 255667777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHhCCCCCC-----HHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTF------------MNAYCEEGNIQRLLALLQEMETKAIGPT-----HVT 450 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~ 450 (647)
+...|++++|...++.+.... +.+...+..+ ...+...|++++|...|+.+.+. .|+ ...
T Consensus 221 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~ 297 (450)
T 2y4t_A 221 YYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRS 297 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHH
Confidence 777777777777777776542 2233333333 77888889999999999988875 344 346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHH---
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILID--- 526 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~--- 526 (647)
+..+..++.+.|++++|...++++.+.. +.+..++..+..+|...|++++|...++++.+ +.| +...+..+..
T Consensus 298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 374 (450)
T 2y4t_A 298 KERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQE--HNENDQQIREGLEKAQR 374 (450)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCcchHHHHHHHHHHHH
Confidence 7788888889999999999999988763 55778888999999999999999999999988 455 4666666663
Q ss_pred ---------HHhhcC-----ChhhHHHHHHH-HHHcCCCCCH-----------HHHHHHHHHHHhcCCHHHHH
Q 006396 527 ---------GLCVNG-----DLKNADCLLVS-LQEHNISLTK-----------VAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 527 ---------~~~~~g-----~~~~A~~~~~~-~~~~~~~~~~-----------~~~~~l~~~~~~~g~~~~A~ 573 (647)
.|...| +.+++.+.+++ ..+. .|+. ..+..+..+|...||.+++.
T Consensus 375 ~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~--~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~r~ 445 (450)
T 2y4t_A 375 LLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQW--HPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRK 445 (450)
T ss_dssp HHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHS--CGGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGGC-
T ss_pred HhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHh--CCCCCCCchHHHHHHHHHHHHHHHHHHhCCHHHHH
Confidence 344444 56677888876 4432 2321 15566666776666666543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.3e-20 Score=176.16 Aligned_cols=316 Identities=9% Similarity=0.024 Sum_probs=167.0
Q ss_pred CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 006396 272 DLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMID 351 (647)
Q Consensus 272 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 351 (647)
+...+..+...+...|++++|+..|+++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 34556677777778888888888888777652 3345556666666677777777777777766653 334566666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCC--CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 352 GYVKLGNIGEAVQLYRQLIEKRIS--PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 352 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
++...|++++|...++++.+..+. .+...+..+..... ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 777777777777777776654320 12222222210000 00011123444455555
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555555554432 2334445555555555555555555555555432 334445555555555555555555555555
Q ss_pred HhCCCCC-CHHHHH------------HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHH
Q 006396 510 WLHNLEP-TSATYN------------ILIDGLCVNGDLKNADCLLVSLQEHNISLTKV----AYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 510 ~~~~~~p-~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A 572 (647)
.+. .| +...+. .++..+...|++++|...++++.+.. +.+.. .+..++.++...|++++|
T Consensus 215 ~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred Hhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 542 22 222221 12444555555555555555555532 11221 233345555555555555
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+..++++++.. |.+..++..++.++...|++++|.+.++++++.+
T Consensus 292 ~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 292 IRICSEVLQME---------------------PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhC---------------------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 55555555544 4455555555555555555555555555555543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.89 E-value=8.6e-20 Score=176.07 Aligned_cols=332 Identities=11% Similarity=0.035 Sum_probs=236.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHH
Q 006396 237 NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILL 316 (647)
Q Consensus 237 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 316 (647)
++..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 79 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH 79 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence 45567888999999999999999999998864 3367889999999999999999999999998763 345677888899
Q ss_pred HHhhcCCHHHHHHHHHHHHHcCCC--CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH
Q 006396 317 GLCEKEMITEARMYFDSLIMSNCI--QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV 394 (647)
Q Consensus 317 ~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 394 (647)
.+...|++++|...++.+...... .+...+..+...+. ...+..+...+...|++
T Consensus 80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence 999999999999999999876420 23444443321110 00122334455556666
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 395 ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 395 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
++|...++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++
T Consensus 137 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 137 TAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66666666655542 3445556666666666666666666666666543 345556666666666666666666666666
Q ss_pred HHcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H----HHHHHHHHHHhhcCChhhH
Q 006396 475 YVIGVTPDQITYN------------TIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-S----ATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 475 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~----~~~~~l~~~~~~~g~~~~A 537 (647)
.+.. +.+...+. .+...+...|++++|...++++.+. .|+ . ..+..++.++...|++++|
T Consensus 215 ~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6542 22333222 3366688889999999999998883 333 3 3355678889999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA 617 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 617 (647)
...++++.+.. +.+..++..++.++...|++++|...++++++.. |.+..++..+..+
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~---------------------p~~~~~~~~l~~~ 349 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN---------------------ENDQQIREGLEKA 349 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCChHHHHHHHHH
Confidence 99999998853 4467788999999999999999999999999876 6667777777666
Q ss_pred HHc
Q 006396 618 FHQ 620 (647)
Q Consensus 618 ~~~ 620 (647)
...
T Consensus 350 ~~~ 352 (359)
T 3ieg_A 350 QRL 352 (359)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.7e-18 Score=170.58 Aligned_cols=352 Identities=12% Similarity=0.035 Sum_probs=245.9
Q ss_pred CcchHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCH
Q 006396 202 DIVTYTVLICGYCQ----IGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 202 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
+...+..+...|.. .+++++|.+.|+...+.| ++..+..+...|.. .+++++|.+.|++..+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 33444444444444 455555655555555542 34445555555555 555666666666555543 34
Q ss_pred hhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCcHHH
Q 006396 274 VTYSILIRGLCK----QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCE----KEMITEARMYFDSLIMSNCIQDVVL 345 (647)
Q Consensus 274 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~ 345 (647)
..+..+...|.. .+++++|+..|++....+ +...+..+...|.. .++.++|.++|+.....+ ++..
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 444455555555 556666666666665543 33344444444544 556777777777666653 5666
Q ss_pred HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 346 YNIMIDGYVK----LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 346 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|+...+.+ +...+.
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~ 259 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF 259 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 6777777776 788888888888887764 44566667777765 778888888888887653 455666
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 006396 418 TFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ-----WKLQEAVQLLEDMYVIGVTPDQITYNT 488 (647)
Q Consensus 418 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~ 488 (647)
.+...|.. .+++++|...|+...+.+ +...+..+...+... +++++|...+++..+.+ +...+..
T Consensus 260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~ 333 (490)
T 2xm6_A 260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN 333 (490)
T ss_dssp HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence 67777777 788999999998887764 455666777777766 89999999999988865 4566777
Q ss_pred HHHHHHhcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 489 IIRSFCKCK---DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 489 l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
+...|...| ++++|.++|++..+.+ ++..+..|...|.. .+++++|..+|+++.+.+ +...+..+..
T Consensus 334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~ 407 (490)
T 2xm6_A 334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE 407 (490)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 777777756 7889999999998853 67888888988888 889999999999999865 5678888888
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006396 562 AHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.|.. .+++++|..+|+++.+.+
T Consensus 408 ~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 408 IYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 8888 899999999999999876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-17 Score=166.71 Aligned_cols=366 Identities=13% Similarity=0.043 Sum_probs=308.8
Q ss_pred HHHHHHHHHhCCCCcCcccHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHc----cCCHHHHH
Q 006396 222 GLKLREVMLSQGFKLNVIAYSVLLSSMCK----SGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCK----QDKVHKAI 293 (647)
Q Consensus 222 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~ 293 (647)
+.+.++...+.| ++..+..+...|.. .+++++|...|++..+.| +...+..+...|.. .+++++|.
T Consensus 26 ~~~~~~~~a~~g---~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~ 99 (490)
T 2xm6_A 26 NLEQLKQKAESG---EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAV 99 (490)
T ss_dssp CHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHH
Confidence 345555555543 66777888888887 899999999999998864 66778888888988 89999999
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHhh----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHh----cCCHHHHHHH
Q 006396 294 QLYNEMCSKRISPNSFAHGAILLGLCE----KEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVK----LGNIGEAVQL 365 (647)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~ 365 (647)
..|++..+.+ +...+..+...|.. .+++++|..+|+.....+ ++..+..+...|.. .++.++|.+.
T Consensus 100 ~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 173 (490)
T 2xm6_A 100 IWYKKAALKG---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREW 173 (490)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9999998865 55666777777777 789999999999998875 67778888888887 7899999999
Q ss_pred HHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 006396 366 YRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE----EGNIQRLLALLQ 437 (647)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~ 437 (647)
|++..+.+ +...+..+...|.. .++.++|...|++..+.+ +...+..+...|.. .+++++|...|+
T Consensus 174 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~ 247 (490)
T 2xm6_A 174 YSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFS 247 (490)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 99998874 66778888888887 899999999999998864 56778888888886 789999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHH
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCK----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC-----KDLRKAFQLLNQ 508 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~ 508 (647)
...+.+ +...+..+...+.. .+++++|...+++..+.| +...+..+...|... +++++|..++++
T Consensus 248 ~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~ 321 (490)
T 2xm6_A 248 QSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTK 321 (490)
T ss_dssp HHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHH
Confidence 998864 55667777777777 899999999999998754 556777888888877 899999999999
Q ss_pred HHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHH
Q 006396 509 MWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVE 581 (647)
Q Consensus 509 ~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~ 581 (647)
..+.+ +...+..+...|...| ++++|.++++++.+.| +...+..+...|.. .+++++|+.+|+++.+
T Consensus 322 a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~ 395 (490)
T 2xm6_A 322 SAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAE 395 (490)
T ss_dssp HHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHh
Confidence 99854 5677888888888766 8899999999999864 67889999999998 8999999999999998
Q ss_pred cCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCC
Q 006396 582 KGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ----GGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+ ++.++..++..|.+ .++.++|.++++++.+.++.
T Consensus 396 ~~-----------------------~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~ 435 (490)
T 2xm6_A 396 QG-----------------------LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN 435 (490)
T ss_dssp TT-----------------------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred CC-----------------------CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence 65 47789999999998 89999999999999987754
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-19 Score=171.64 Aligned_cols=294 Identities=12% Similarity=0.019 Sum_probs=220.7
Q ss_pred CCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH
Q 006396 305 SPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL 384 (647)
Q Consensus 305 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 384 (647)
+.+...+......+...|++++|..+++.+.... +.+...+..++.++...|++++|...++++.+..+. +...+..+
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l 96 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV 96 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence 3344555555555666666666666666665543 233444555666677778888888888777775432 56667777
Q ss_pred HHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 006396 385 IYGFCKNG-KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK 463 (647)
Q Consensus 385 ~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 463 (647)
...+...| ++++|...++.+.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|+
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 77777888 7888888888877653 4456677788888888888888888888887753 3345666778888888899
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--------CCCCHHHHHHHHHHHhhcCChh
Q 006396 464 LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--------LEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 464 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
+++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.....+..++.+|...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999998888764 5667788888889999999999999998887621 1234678889999999999999
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML 615 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 615 (647)
+|...++++.+.. +.+..++..++.++...|++++|...++++++.. |.+...+..++
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~ 311 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR---------------------RDDTFSVTMLG 311 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC---------------------SCCHHHHHHHH
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC---------------------CCchHHHHHHH
Confidence 9999999999863 4567789999999999999999999999998876 77889999999
Q ss_pred HHH-HcCCCHH
Q 006396 616 IAF-HQGGDLG 625 (647)
Q Consensus 616 ~~~-~~~g~~~ 625 (647)
.++ ...|+.+
T Consensus 312 ~~~~~~~g~~~ 322 (330)
T 3hym_B 312 HCIEMYIGDSE 322 (330)
T ss_dssp HHHHTTTTC--
T ss_pred HHHHHHhCchh
Confidence 988 4566644
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-16 Score=164.06 Aligned_cols=440 Identities=14% Similarity=0.125 Sum_probs=314.5
Q ss_pred cCHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCC--CCcCHHhHHHH
Q 006396 29 VSIQTYNSLLYNLRHTDIMWDLYDDIKVSET--PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKE--FGPSVVSLNAI 104 (647)
Q Consensus 29 ~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~~ 104 (647)
.|...|..++...... =+++.+....... ..+|.--...++.|...|.+.+|+++++++...+ +..+...-+.+
T Consensus 951 ~d~~lW~~vl~~~n~~--RR~Lidqv~a~aL~e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlL 1028 (1630)
T 1xi4_A 951 KDPELWGSVLLESNPY--RRPLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLL 1028 (1630)
T ss_pred cCHHHHHHHhcCCcHH--HHHHHHHHHHhhcccccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHH
Confidence 4778888888632211 1223333222111 2456666778889999999999999999998432 12344556667
Q ss_pred HHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCCh
Q 006396 105 MSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQI 184 (647)
Q Consensus 105 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 184 (647)
+....+. +..+..++..+.... + ...+...+...|.+++|..+|++.. ......+.+ +...+++
T Consensus 1029 i~tAIka-D~~Rv~eyI~kLd~~----d---~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nl 1092 (1630)
T 1xi4_A 1029 ILTAIKA-DRTRVMEYINRLDNY----D---APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNL 1092 (1630)
T ss_pred HHHHHHh-ChhhHHHHHHHhhhc----c---HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhH
Confidence 7766666 556666666655422 1 3347777888999999999999872 122222333 3377889
Q ss_pred hhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 185 SGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 185 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
++|.++.++.. ++.+|..+..++...|++++|.+.|.+. .+...|..++.++.+.|++++|.+.|...
T Consensus 1093 drAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mA 1160 (1630)
T 1xi4_A 1093 DRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMA 1160 (1630)
T ss_pred HHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999988652 5778999999999999999999999664 37788899999999999999999999988
Q ss_pred HHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHH
Q 006396 265 EAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV 344 (647)
Q Consensus 265 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 344 (647)
.+.. ++....+.++.+|++.+++++..... . .++...+..+...+...|++++|..+|... .
T Consensus 1161 rk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ 1222 (1630)
T 1xi4_A 1161 RKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------S 1222 (1630)
T ss_pred Hhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------h
Confidence 7763 34444456888999999888544332 2 345567778889999999999999999874 4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
.|..+..++.+.|+++.|.+.+++.. +..+|..+..+|...|++..|......+ ..++..+..++..|.
T Consensus 1223 ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe 1291 (1630)
T 1xi4_A 1223 NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQ 1291 (1630)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHH
Confidence 78899999999999999999998872 6688888999999999999888766543 345667778999999
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHhc
Q 006396 425 EEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ--WKLQEAVQLLEDMYVIGVTP------DQITYNTIIRSFCKC 496 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~ 496 (647)
+.|.+++|+.+++...... +-....|+.+...+++. ++..++.+.|..-.. +++ +...|..+...|.+.
T Consensus 1292 ~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~ 1368 (1630)
T 1xi4_A 1292 DRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKY 1368 (1630)
T ss_pred HcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhc
Confidence 9999999999998877654 33444666666666653 344445555543322 222 456789999999999
Q ss_pred CCHHHHHHHHH-------------HHHhCCCCCCHHHHHHHHHHHhhcC
Q 006396 497 KDLRKAFQLLN-------------QMWLHNLEPTSATYNILIDGLCVNG 532 (647)
Q Consensus 497 ~~~~~A~~~~~-------------~~~~~~~~p~~~~~~~l~~~~~~~g 532 (647)
|+++.|....- ..+. -..++..|...+..|...+
T Consensus 1369 ~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~elyykai~Fyl~~~ 1415 (1630)
T 1xi4_A 1369 EEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVELYYRAIQFYLEFK 1415 (1630)
T ss_pred ccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHHHHHHHHHHHHhhC
Confidence 99999884322 2221 1336777766666666444
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3e-16 Score=163.99 Aligned_cols=315 Identities=11% Similarity=0.054 Sum_probs=202.9
Q ss_pred hhHHHhcCChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHH
Q 006396 3 AFVYSRTGMVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDA 82 (647)
Q Consensus 3 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 82 (647)
+.++...|.+++|..+|+++.. .....+.++...++++.|.++++++ .++.+|..++.++...|++++|
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHH
Confidence 5667777888888888887642 2344455555677777777777755 4466777888888888888888
Q ss_pred HHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 83 ILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
+..|.++ .+...|..++.++.+.|++++|.+.+....+.. +++.....++.+|.+.+++++.... .+
T Consensus 1125 IdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~f----I~- 1191 (1630)
T 1xi4_A 1125 IDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEF----IN- 1191 (1630)
T ss_pred HHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHH----Hh-
Confidence 8887664 256667777888888888888888887776653 3333444577777777777643322 21
Q ss_pred CCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHH
Q 006396 163 GVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYS 242 (647)
Q Consensus 163 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 242 (647)
.++...|..+...+...|++++|..+|... ..|..++..+.+.|++++|.+.+++.. +..+|.
T Consensus 1192 --~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aWk 1254 (1630)
T 1xi4_A 1192 --GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWK 1254 (1630)
T ss_pred --CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHHH
Confidence 345566667777777788888888877764 257777777888888888887777662 556777
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHh--h
Q 006396 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLC--E 320 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~--~ 320 (647)
.+..+|...|++..|......+. .+...+..++..|.+.|.+++|+.+++...... +.....+..+...++ +
T Consensus 1255 ev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~ 1328 (1630)
T 1xi4_A 1255 EVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK 1328 (1630)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCC
Confidence 77777777777777777655422 245556677777777888888888887766442 222223333333333 2
Q ss_pred cCCHHHHHHHHHHHHHcC----CCCcHHHHHHHHHHHHhcCCHHHHHH
Q 006396 321 KEMITEARMYFDSLIMSN----CIQDVVLYNIMIDGYVKLGNIGEAVQ 364 (647)
Q Consensus 321 ~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~ 364 (647)
-++..++.+.|..-.... ...+...|..+...|.+.|+++.|..
T Consensus 1329 peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1329 PQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 334444444444332210 00134566667777777777777664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.86 E-value=9.3e-18 Score=170.27 Aligned_cols=432 Identities=12% Similarity=0.085 Sum_probs=296.6
Q ss_pred HHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 006396 156 TNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFK 235 (647)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 235 (647)
|++..+. .|-+...|..++. +...|++++|..+|++++... +.+...|..++..+.+.|++++|.++|++++...
T Consensus 2 le~al~~-~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~-- 76 (530)
T 2ooe_A 2 AEKKLEE-NPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV-- 76 (530)
T ss_dssp HHHHHHH-CTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred hhhHhhh-CCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence 4455444 3557889999998 477899999999999998762 2256678899999999999999999999999874
Q ss_pred cCcccHHHHHHHH-HhcCChhHHHH----HHHHHHH-CCCCC-CHhhHHHHHHHHHc---------cCCHHHHHHHHHHH
Q 006396 236 LNVIAYSVLLSSM-CKSGRIDEALG----LLYEMEA-VGLKP-DLVTYSILIRGLCK---------QDKVHKAIQLYNEM 299 (647)
Q Consensus 236 ~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~-~~~~~-~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 299 (647)
|+...|..++... ...|+.+.|.+ +|+.... .|..| +...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 5666777776533 45677777665 6666554 35443 45667777766554 67888999999988
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHH------HHCC
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQL------IEKR 373 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~ 373 (647)
++. |... ...+...+.. ++... +..+...++. ...+++..|..+++.. .+..
T Consensus 157 l~~---P~~~-~~~~~~~~~~---~e~~~-------------~~~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~ 214 (530)
T 2ooe_A 157 CVN---PMIN-IEQLWRDYNK---YEEGI-------------NIHLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRN 214 (530)
T ss_dssp TTS---CCTT-HHHHHHHHHH---HHHHH-------------CHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSS
T ss_pred Hhc---hhhh-HHHHHHHHHH---HHHhh-------------chhHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccc
Confidence 872 3221 1111111111 00000 0001111111 1234455666555542 2221
Q ss_pred ---CCCCc--------cchHHHHHHHHhc----CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------cC
Q 006396 374 ---ISPSI--------VTFNSLIYGFCKN----GKV----ADARRLLDTIKLHGLEPSAVTYTTFMNAYCE-------EG 427 (647)
Q Consensus 374 ---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~ 427 (647)
++|+. ..|...+...... ++. ..+..+|++..... +.+...|..++..+.. .|
T Consensus 215 ~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g 293 (530)
T 2ooe_A 215 APSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKG 293 (530)
T ss_dssp SCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhcc
Confidence 23321 2333333322221 222 36777888887652 5567888888888775 68
Q ss_pred CHH-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H-HHHHHHHHHHHhcCC
Q 006396 428 NIQ-------RLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-Q-ITYNTIIRSFCKCKD 498 (647)
Q Consensus 428 ~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~ 498 (647)
+++ +|..+|+...+.-.+.+...|..++..+.+.|++++|..+|+++++. +|+ . ..|..++..+.+.|+
T Consensus 294 ~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~ 371 (530)
T 2ooe_A 294 DMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEG 371 (530)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcC
Confidence 877 89999999886322446788889999999999999999999999985 443 3 578888888889999
Q ss_pred HHHHHHHHHHHHhCCCCC-CHHHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 499 LRKAFQLLNQMWLHNLEP-TSATYNILIDG-LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 499 ~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+++|..+|++..+. .| +...+...+.. +...|++++|..+|+++++.. +.+...|..++..+...|+.++|..+|
T Consensus 372 ~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~ 448 (530)
T 2ooe_A 372 IKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLF 448 (530)
T ss_dssp HHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHH
Confidence 99999999999984 33 33333333322 346899999999999999853 446779999999999999999999999
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++... +.+| ....|...+......|+.+.+..+.+++.+.-+
T Consensus 449 ~~al~~~-------------------~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p 494 (530)
T 2ooe_A 449 ERVLTSG-------------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR 494 (530)
T ss_dssp HHHHHSC-------------------CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred HHHHhcc-------------------CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 9999875 1122 255888889999999999999999999887543
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.8e-19 Score=169.26 Aligned_cols=273 Identities=9% Similarity=-0.016 Sum_probs=237.7
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
.+...+..+...+...|++++|..+++++.+..+. +...+..++.++...|++++|...++.+.... +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 45556777888899999999999999999887543 56677778899999999999999999998763 45678888999
Q ss_pred HHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 421 NAYCEEG-NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDL 499 (647)
Q Consensus 421 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 499 (647)
..+...| ++++|...|+...+.. +.+...|..+...+...|++++|...++++.+.. +.+...+..+...|...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhH
Confidence 9999999 9999999999998764 4456788999999999999999999999999874 55567788899999999999
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHhcCCHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN--------ISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. .+....++..++.++...|++++
T Consensus 176 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 254 (330)
T 3hym_B 176 KLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAE 254 (330)
T ss_dssp HHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHH
Confidence 99999999999842 3468899999999999999999999999998731 13345689999999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|+..++++++.. |.+..++..++.++.+.|++++|.+.++++++.++
T Consensus 255 A~~~~~~a~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 255 ALDYHRQALVLI---------------------PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp HHHHHHHHHHHS---------------------TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred HHHHHHHHHhhC---------------------ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 999999999987 77889999999999999999999999999988654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-17 Score=167.42 Aligned_cols=435 Identities=11% Similarity=0.019 Sum_probs=272.8
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCC
Q 006396 51 YDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLH 130 (647)
Q Consensus 51 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~ 130 (647)
|++.+...| .+..+|..++. +.+.|++++|+.+|++++... +.+...|...+..+.+.|++++|..+|+++++. .
T Consensus 2 le~al~~~P-~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~ 76 (530)
T 2ooe_A 2 AEKKLEENP-YDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--V 76 (530)
T ss_dssp HHHHHHHCT-TCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--C
T ss_pred hhhHhhhCC-CCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--C
Confidence 455555443 67788888887 477888999999999888764 336778888888888888999999999888876 4
Q ss_pred CCHHHHHHHHHHH-HhcCCHHHHHH----HHHHHhhC-CCC-CChhhHHHHHHHHHh---------cCChhhHHHHHHHH
Q 006396 131 PDAFSYNILIHGL-CIAGSMEEALE----FTNDMGRH-GVE-PDAITYSILAKGFHL---------LSQISGAWKVIQKL 194 (647)
Q Consensus 131 ~~~~~~~~l~~~~-~~~~~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~~~~~~ 194 (647)
|+...|...+... ...|++++|.+ +|+..... |.. ++...|...+..... .|+++.|..+|++.
T Consensus 77 p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~a 156 (530)
T 2ooe_A 77 LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRG 156 (530)
T ss_dssp CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHH
Confidence 6777777766533 34566666554 66665442 332 345666666665543 45566666666666
Q ss_pred HhcCCCCCc---chHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHH-----
Q 006396 195 LIKGSDPDI---VTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEA----- 266 (647)
Q Consensus 195 ~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----- 266 (647)
+.. |+. ..|..........|. ..+.. ++. ...+++..|..++.++..
T Consensus 157 l~~---P~~~~~~~~~~~~~~e~~~~~-~~~~~-------------------~l~--~~~~~~~~A~~~~~~~~~~~~~l 211 (530)
T 2ooe_A 157 CVN---PMINIEQLWRDYNKYEEGINI-HLAKK-------------------MIE--DRSRDYMNARRVAKEYETVMKGL 211 (530)
T ss_dssp TTS---CCTTHHHHHHHHHHHHHHHCH-HHHHH-------------------HHH--TTHHHHHHHHHHHHHHHHHHHHC
T ss_pred Hhc---hhhhHHHHHHHHHHHHHhhch-hHHHH-------------------HHH--HhhHHHHHHHHHHHHHHHHHHHh
Confidence 542 221 111111110000000 00000 000 012334444444443211
Q ss_pred -CC---CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhh----cCC----HHHHHHHHHHH
Q 006396 267 -VG---LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCE----KEM----ITEARMYFDSL 334 (647)
Q Consensus 267 -~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~----~~~a~~~~~~~ 334 (647)
.. ++|+.. ........ .+...+..... .++ ...+...|++.
T Consensus 212 ~~~~~~~~p~~~------------~~~~~~~~---------------~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~a 264 (530)
T 2ooe_A 212 DRNAPSVPPQNT------------PQEAQQVD---------------MWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQC 264 (530)
T ss_dssp CSSSCCCCCC--------------CCHHHHHH---------------HHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHH
T ss_pred ccccccCCCCCC------------hhHHHHHH---------------HHHHHHHHHHcCCccCCcchhHHHHHHHHHHHH
Confidence 00 111100 00000001 11111111000 111 13555666666
Q ss_pred HHcCCCCcHHHHHHHHHHHHh-------cCCHH-------HHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHH
Q 006396 335 IMSNCIQDVVLYNIMIDGYVK-------LGNIG-------EAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRL 400 (647)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 400 (647)
.... +.++..|..++..+.+ .|+++ +|..++++.++.-.+.+...|..++..+.+.|++++|..+
T Consensus 265 l~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~ 343 (530)
T 2ooe_A 265 LLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSI 343 (530)
T ss_dssp HHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHH
Confidence 6543 4467777777777665 68876 8899999888632333567788888888889999999999
Q ss_pred HHHHHHCCCCCC-H-HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHc
Q 006396 401 LDTIKLHGLEPS-A-VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG-LCKQWKLQEAVQLLEDMYVI 477 (647)
Q Consensus 401 ~~~~~~~~~~~~-~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~ 477 (647)
|+.+.+. .|+ . ..|..++..+.+.|++++|..+|+...+.. +.+...|...+.. +...|+.++|..+|++.++.
T Consensus 344 ~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~ 420 (530)
T 2ooe_A 344 YNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK 420 (530)
T ss_dssp HHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH
Confidence 9998875 443 3 578888888888899999999999988753 2222333322222 33589999999999998886
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 478 GVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 478 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
. +.+...|..++..+.+.|+.++|..+|++++..+ ..|+ ...|...+......|+.+.+..+..++.+.
T Consensus 421 ~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 421 Y-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp H-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 5567889999999999999999999999999852 2332 558888888888899999999999999874
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.83 E-value=4.5e-19 Score=171.60 Aligned_cols=318 Identities=11% Similarity=0.004 Sum_probs=189.3
Q ss_pred HHHccCCHHHHHH-HHHHHHhCCC-CC--CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006396 282 GLCKQDKVHKAIQ-LYNEMCSKRI-SP--NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 282 ~~~~~~~~~~a~~-~~~~~~~~~~-~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (647)
.+...|++++|+. .+++...... .| +...+..+...+...|++++|...++.+.... +.+...+..+..++...|
T Consensus 34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 112 (368)
T 1fch_A 34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE 112 (368)
T ss_dssp ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence 3444566666665 5554443210 01 22334445555555555555555555555443 234444555555555555
Q ss_pred CHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
++++|...++++.+..+. +..++..+..++...|++++|...++.+.... +.+...+..+... .
T Consensus 113 ~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~-------~------- 176 (368)
T 1fch_A 113 QELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEG-------A------- 176 (368)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC--------------------
T ss_pred CHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH-------h-------
Confidence 555555555555444221 34444444455555555555555555444432 1111100000000 0
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCC
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLE 515 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 515 (647)
.. ..+ ...+..+. .+...|++++|...++++.+.. +. +..++..+...+...|++++|...++++.+.. +
T Consensus 177 ---~~-~~~-~~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~ 248 (368)
T 1fch_A 177 ---GG-AGL-GPSKRILG-SLLSDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-P 248 (368)
T ss_dssp --------------CTTH-HHHHHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-T
T ss_pred ---hh-hcc-cHHHHHHH-HHhhcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-c
Confidence 00 000 00111223 3337899999999999999864 33 57889999999999999999999999999842 3
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|...++++++.. |+....
T Consensus 249 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~---- 321 (368)
T 1fch_A 249 NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGP---- 321 (368)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC-------
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCCCc----
Confidence 358899999999999999999999999999863 4567799999999999999999999999998764 000000
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
.....+....+|..++.+|...|++++|..++++.+
T Consensus 322 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 322 ----RGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp -------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred ----cccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 000011227899999999999999999999887644
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=7.7e-17 Score=161.61 Aligned_cols=383 Identities=12% Similarity=-0.030 Sum_probs=205.4
Q ss_pred cchHHHHHHHHHhcCChHHHHHHHHHHHhC-----C---CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC-----C-
Q 006396 203 IVTYTVLICGYCQIGNVEEGLKLREVMLSQ-----G---FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV-----G- 268 (647)
Q Consensus 203 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~---~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~- 268 (647)
...|+.+...+...|++++|++.|++..+. + ......+|+.+..+|...|++++|...+++.... +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 445777777777788888888877776542 0 1112345677777777777777777777766432 0
Q ss_pred CCC-CHhhHHHHHHHHHc--cCCHHHHHHHHHHHHhCCCCCC-cccHHHHHHH---HhhcCCHHHHHHHHHHHHHcCCCC
Q 006396 269 LKP-DLVTYSILIRGLCK--QDKVHKAIQLYNEMCSKRISPN-SFAHGAILLG---LCEKEMITEARMYFDSLIMSNCIQ 341 (647)
Q Consensus 269 ~~~-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~ 341 (647)
..+ ...++.....++.. .+++++|+..|++..+. .|+ +..+..+... +...++.++|.+.++...... +.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~--~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK--KPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 011 12334433333332 34567777777776654 233 2222222222 233445555555555555543 22
Q ss_pred cHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 342 DVVLYNIMIDGYVK----LGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 342 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
+...+..+...+.. .+++++|.+.+++.....+. +..++..+...+...|++++|...+++..+.. +.+...+.
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~ 285 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHC 285 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHH
Confidence 33444433333332 34455566666655554322 44455555556666666666666666555432 23344444
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK 497 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 497 (647)
.+..+|...+... .... . ..........+..+.|...+++..+.. +.+...+..+...|...|
T Consensus 286 ~lg~~y~~~~~~~---------~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 286 QIGCCYRAKVFQV---------MNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh---------hhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence 4444432211100 0000 0 000000111233567888888877754 555667788888999999
Q ss_pred CHHHHHHHHHHHHhCCCCCCH--HHHHHHHH-HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTS--ATYNILID-GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
++++|...|+++++....|.. ..+..+.. .+...|++++|+..|+++++ +.|+...... ....+.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~l~~ 417 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDKLQK 417 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHHHHH
Confidence 999999999998884333221 12333333 23467889999999999988 4455433222 2234556
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++++.+..+ |.++.+|..++.+|...|++++|++.++++++.++
T Consensus 418 ~~~~~l~~~---------------------p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 418 IAKMRLSKN---------------------GADSEALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHC---------------------C-CTTHHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 677777766 78899999999999999999999999999998765
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-18 Score=165.58 Aligned_cols=273 Identities=11% Similarity=-0.050 Sum_probs=190.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYC 424 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 424 (647)
.+..+...+.+.|++++|...|+++++..+. +..++..+..++...|++++|...|+++.... +.+...+..+..+|.
T Consensus 67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 144 (365)
T 4eqf_A 67 GAFEEGLKRLKEGDLPVTILFMEAAILQDPG-DAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT 144 (365)
T ss_dssp THHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 3445555566666666666666666654322 45556666666666666666666666666542 344566666667777
Q ss_pred HcCCHHHHHHHHHHHHhCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 006396 425 EEGNIQRLLALLQEMETKAIGPT-----------HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIR 491 (647)
Q Consensus 425 ~~~~~~~a~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~ 491 (647)
..|++++|...|+.+.+.. |+ ...+..+...+...|++++|...++++.+.. +. +..++..+..
T Consensus 145 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 145 NTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGV 221 (365)
T ss_dssp HTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHH
Confidence 7777777777777665531 21 2234455778889999999999999999864 33 6889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
.|...|++++|...++++++.. +.+..+|..++.+|...|++++|...++++.+.. +.+..++..++.++...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999842 3368899999999999999999999999999863 4457799999999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
|+..++++++..-... .-. .......+..+|..++.++...|+.+.|.++.++
T Consensus 300 A~~~~~~al~~~~~~~--~~~-------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSR--NQQ-------QVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC---------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccC--CCc-------ccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 9999999987540000 000 0000011367899999999999999999887765
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.81 E-value=5.6e-18 Score=163.88 Aligned_cols=230 Identities=13% Similarity=-0.044 Sum_probs=103.4
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH 179 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 179 (647)
.+..++..+.+.|++++|...|+++++.. +.+..++..+...+...|++++|.+.|+++.+.. +.+..++..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444444444455555555554444442 3334444444444444455555555444444432 223444444444444
Q ss_pred hcCChhhHHHHHHHHHhcCCCCCcchHHH---------------HHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHHH
Q 006396 180 LLSQISGAWKVIQKLLIKGSDPDIVTYTV---------------LICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYSV 243 (647)
Q Consensus 180 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 243 (647)
..|++++|.+.++++...... +...+.. .+..+...|++++|...++.+.+..... +..++..
T Consensus 144 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~ 222 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCG 222 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHH
Confidence 445555555444444443211 1111110 1222225555555655555555542211 2344555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCC
Q 006396 244 LLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEM 323 (647)
Q Consensus 244 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 323 (647)
+..++...|++++|...++++.... +.+..++..+...+...|++++|+..++++.+.. +.+...+..+...+...|+
T Consensus 223 l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~ 300 (368)
T 1fch_A 223 LGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGA 300 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCC
Confidence 5555555555555555555555432 2234455555555555555555555555554431 1222333333333334444
Q ss_pred HHHHHHHHHHH
Q 006396 324 ITEARMYFDSL 334 (647)
Q Consensus 324 ~~~a~~~~~~~ 334 (647)
+++|...++..
T Consensus 301 ~~~A~~~~~~a 311 (368)
T 1fch_A 301 HREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44444443333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.3e-18 Score=159.73 Aligned_cols=260 Identities=12% Similarity=-0.013 Sum_probs=182.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN 428 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 428 (647)
+...+...|++++|..+++++.+..+. +...+..+..++...|++++|...++.+.... +.+...+..+...|...|+
T Consensus 27 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~ 104 (327)
T 3cv0_A 27 EGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 104 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcCC
Confidence 344444455555555555554443221 33444444455555555555555555544432 2344455555555555555
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHH-------------HH-HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYT-------------VV-IK-GLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSF 493 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~-------------~l-~~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 493 (647)
+++|...++.+.+.. +.+...+. .+ .. .+...|++++|...++++.+.. +.+...+..+...+
T Consensus 105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 182 (327)
T 3cv0_A 105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLY 182 (327)
T ss_dssp HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 555555555555432 11111111 11 22 3677889999999999999874 55788899999999
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (647)
...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|.
T Consensus 183 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 260 (327)
T 3cv0_A 183 NLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAA 260 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHH
Confidence 99999999999999999842 3358899999999999999999999999999863 456779999999999999999999
Q ss_pred HHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC------------CHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 574 TFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP------------DQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..++++++.. |. +..+|..++.++.+.|++++|.+++++++
T Consensus 261 ~~~~~a~~~~---------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 313 (327)
T 3cv0_A 261 KQLVRAIYMQ---------------------VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313 (327)
T ss_dssp HHHHHHHHHH---------------------TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred HHHHHHHHhC---------------------CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9999999865 33 57899999999999999999999987654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.6e-17 Score=153.96 Aligned_cols=291 Identities=11% Similarity=0.053 Sum_probs=121.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh
Q 006396 31 IQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK 110 (647)
Q Consensus 31 ~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (647)
......+|...|++++|.+.++++. ++.+|..++.++.+.|++++|++.|.+. +|...|..++..+..
T Consensus 6 ~~a~~~ll~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~ 73 (449)
T 1b89_A 6 TSAVQVLIEHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANT 73 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHh
Confidence 3455667778899999999999983 3458999999999999999999999763 466789999999999
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV 190 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 190 (647)
.|++++|+..++.+.+. .+++.+...++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...
T Consensus 74 ~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~ 144 (449)
T 1b89_A 74 SGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLL 144 (449)
T ss_dssp -------------------------------------CHHHHTTTTT-------CC----------------CTTTHHHH
T ss_pred CCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999988887775 5567888999999999999999887774 36778999999999999999999999
Q ss_pred HHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 006396 191 IQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLK 270 (647)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 270 (647)
|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......+.
T Consensus 145 Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~----- 204 (449)
T 1b89_A 145 YNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV----- 204 (449)
T ss_dssp HHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----
T ss_pred HHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----
Confidence 9976 36899999999999999999999988 278899999999999999999966555422
Q ss_pred CCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhc--CCHHHHHHHHHHHHHcCCCC------c
Q 006396 271 PDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEK--EMITEARMYFDSLIMSNCIQ------D 342 (647)
Q Consensus 271 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~------~ 342 (647)
........++..|.+.|.+++|+.+++...... +.....+..+...|++- ++..+..+.|.... ++++ +
T Consensus 205 ~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~ 281 (449)
T 1b89_A 205 VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQ 281 (449)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHT
T ss_pred hCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHH
Confidence 233335578889999999999999999987653 22333444444444432 33344444433211 1111 2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQL 365 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~ 365 (647)
...|..+...|...++++.|...
T Consensus 282 ~~~w~e~~~ly~~~~e~d~A~~t 304 (449)
T 1b89_A 282 AHLWAELVFLYDKYEEYDNAIIT 304 (449)
T ss_dssp TTCHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHhhchHHHHHHH
Confidence 44566777777777777777653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.2e-17 Score=152.16 Aligned_cols=254 Identities=13% Similarity=0.072 Sum_probs=173.0
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVA 395 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 395 (647)
......|++..|+...+.+..............+..+|...|+++.|+..++. .-+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556778888887776654432111123445566778888888888776544 13445666777777777778888
Q ss_pred HHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 396 DARRLLDTIKLHGL-EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDM 474 (647)
Q Consensus 396 ~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 474 (647)
+|.+.++.+...+. +.+...+..+...+...|++++|+..++. +.+...+..++..+.+.|++++|.+.++++
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 156 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM 156 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888776553 33455666666777888888888887776 356677777777888888888888888888
Q ss_pred HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC
Q 006396 475 YVIGVTPDQITY---NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL 551 (647)
Q Consensus 475 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 551 (647)
.+.. |+.... ..++..+...|++++|..+|+++.+. .+.++..++.++.++.+.|++++|...++++++.. +.
T Consensus 157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~ 232 (291)
T 3mkr_A 157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG 232 (291)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence 7753 433211 12223334457788888888888774 24467777888888888888888888888877753 44
Q ss_pred CHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC
Q 006396 552 TKVAYTTIIKAHCAEGDVHK-AMTFFCQMVEKG 583 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~ 583 (647)
+..++..++.++...|+.++ +.++++++++.+
T Consensus 233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 56677777777878887765 467778887766
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.3e-17 Score=161.03 Aligned_cols=279 Identities=9% Similarity=-0.056 Sum_probs=190.3
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|++++...+ .+..++..++..+...|++++|...|+++.+.. +.+..++..+.
T Consensus 63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 4456688899999999999999999999987654 367788999999999999999999999998874 55678888899
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhH----------HHHHHHHHhcCChhhHHHHHHHHHhcCCC-CCcchHHHH
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITY----------SILAKGFHLLSQISGAWKVIQKLLIKGSD-PDIVTYTVL 209 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~----------~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l 209 (647)
..|...|++++|.+.++++.+..+ .+...+ ..+...+...|++++|.+.++++...... ++..++..+
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l 219 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQNP-KYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL 219 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCH-HHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhCc-cchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence 999999999999999998877421 122222 33466777777788888888777766322 145567777
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV 289 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 289 (647)
...+...|++++|.+.++.+.+... .+..+|..+..++...|++++|...|+++.+.. +.+..++..+..++...|++
T Consensus 220 ~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 297 (365)
T 4eqf_A 220 GVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY 297 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence 7777777777777777777776642 256677777777777777777777777776652 22466677777777777777
Q ss_pred HHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 006396 290 HKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQ 368 (647)
Q Consensus 290 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 368 (647)
++|...|+++.+. .|+...... ......+...+..+..++...|+.+.+..+.++
T Consensus 298 ~~A~~~~~~al~~--~~~~~~~~~----------------------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 298 REAVSNFLTALSL--QRKSRNQQQ----------------------VPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHH--HHCC----------------------------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh--CcccCCCcc----------------------cchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 7777777776653 111000000 000011345677777778888888777776654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.78 E-value=1.1e-16 Score=149.64 Aligned_cols=283 Identities=10% Similarity=0.067 Sum_probs=113.8
Q ss_pred HhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 74 CQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEAL 153 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 153 (647)
-+.|+.++|.+.++++. ++.+|..++.++.+.|++++|.+.|.+ .+|...|..++..+...|++++|.
T Consensus 14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi 81 (449)
T 1b89_A 14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELV 81 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHH
Confidence 46788999999999883 234899999999999999999999965 356678899999999999999999
Q ss_pred HHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 006396 154 EFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG 233 (647)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 233 (647)
..++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+++|...|..+
T Consensus 82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---- 148 (449)
T 1b89_A 82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---- 148 (449)
T ss_dssp -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence 988877664 4557888899999999999999888774 367779999999999999999999999866
Q ss_pred CCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 006396 234 FKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGA 313 (647)
Q Consensus 234 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 313 (647)
..|..++.++.+.|++++|.+.++++. ++.+|..++.+|...|+++.|......+ ...+.....
T Consensus 149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA~------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~ 212 (449)
T 1b89_A 149 -----SNFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE 212 (449)
T ss_dssp -----TCHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred -----hhHHHHHHHHHHhccHHHHHHHHHHcC------CchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence 478999999999999999999999882 7889999999999999999995544332 223333445
Q ss_pred HHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC------CccchHHHHH
Q 006396 314 ILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-RISP------SIVTFNSLIY 386 (647)
Q Consensus 314 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~ 386 (647)
++..|.+.|.++++..+++...... +.....|+-+..+|++- .+++..+.++..... +++| +...|..+..
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ 290 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVF 290 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 6666777777777777777776554 44555666665555543 233333333322211 1111 3444555555
Q ss_pred HHHhcCCHHHHHH
Q 006396 387 GFCKNGKVADARR 399 (647)
Q Consensus 387 ~~~~~~~~~~a~~ 399 (647)
.|...++++.|..
T Consensus 291 ly~~~~e~d~A~~ 303 (449)
T 1b89_A 291 LYDKYEEYDNAII 303 (449)
T ss_dssp HHHHTTCHHHHHH
T ss_pred HHHhhchHHHHHH
Confidence 5555555555543
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-16 Score=146.53 Aligned_cols=256 Identities=10% Similarity=0.015 Sum_probs=207.3
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCCc--ccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcC
Q 006396 280 IRGLCKQDKVHKAIQLYNEMCSKRISPNS--FAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLG 357 (647)
Q Consensus 280 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (647)
++-....|++..|+..++..... .|+. .....+..+|...|+++.|...++. ..+|+..++..+...+...+
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 45566789999999999876543 3443 3446678899999999999986654 23567788888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC-CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 006396 358 NIGEAVQLYRQLIEKRISP-SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALL 436 (647)
Q Consensus 358 ~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 436 (647)
+.++|++.++++...+..| +...+..+...+...|++++|.+.++. +.+...+..++..|.+.|++++|...|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999998876444 455666777899999999999999986 567888999999999999999999999
Q ss_pred HHHHhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC
Q 006396 437 QEMETKAIGPTHVTY---TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN 513 (647)
Q Consensus 437 ~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~ 513 (647)
+.+.+.. |+.... ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...++++++.
T Consensus 154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~- 229 (291)
T 3mkr_A 154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK- 229 (291)
T ss_dssp HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 9998863 553321 223344455689999999999999873 778889999999999999999999999999984
Q ss_pred CCC-CHHHHHHHHHHHhhcCChhh-HHHHHHHHHHcCCCCCHH
Q 006396 514 LEP-TSATYNILIDGLCVNGDLKN-ADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 514 ~~p-~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~ 554 (647)
.| ++.++..++.++...|+.++ +.++++++.+. .|+..
T Consensus 230 -~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~ 269 (291)
T 3mkr_A 230 -DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHP 269 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCH
T ss_pred -CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCCh
Confidence 45 68899999999999999976 57899999984 45544
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.5e-16 Score=156.82 Aligned_cols=387 Identities=12% Similarity=-0.009 Sum_probs=249.6
Q ss_pred CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc-----C--CCC-CcchHHHHHHHHHhcCChHHHHHHHHHHHhCC--
Q 006396 164 VEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK-----G--SDP-DIVTYTVLICGYCQIGNVEEGLKLREVMLSQG-- 233 (647)
Q Consensus 164 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-- 233 (647)
.+.....|+.|..++...|++++|++.|++..+. + ..| ...+|..+..+|...|++++|...+++..+..
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3445677999999999999999999999987642 1 123 24578899999999999999999999886531
Q ss_pred ----CC-cCcccHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCCCHhhHHHHHHH---HHccCCHHHHHHHHHHHHhCC
Q 006396 234 ----FK-LNVIAYSVLLSSMCKS--GRIDEALGLLYEMEAVGLKPDLVTYSILIRG---LCKQDKVHKAIQLYNEMCSKR 303 (647)
Q Consensus 234 ----~~-~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~~~~~~a~~~~~~~~~~~ 303 (647)
.. ....++..+..++... +++++|...|++..+... -+...+..+..+ +...++.++|++.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 11 1234566665555554 569999999999988632 234445544444 345678889999999988753
Q ss_pred CCCCcccHHHHHHHHh----hcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 304 ISPNSFAHGAILLGLC----EKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 304 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
+.+...+..+...+. ..+++++|.+.++...... +.+...+..+...|...|++++|...+++..+..+. +..
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 282 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAY 282 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHH
Confidence 333444444444333 4567889999999988765 457788899999999999999999999999987433 455
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
++..+..+|...+.. ..... . ..........+.++.|...++...+.. +.+...+..+...+.
T Consensus 283 ~~~~lg~~y~~~~~~---------~~~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~ 345 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQ---------VMNLR-E------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHA 345 (472)
T ss_dssp HHHHHHHHHHHHHHH---------HHHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---------hhhHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHH
Confidence 666666555321111 11100 0 000111112234677888888877653 334556778888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQI--TYNTIIR-SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 536 (647)
..|++++|...|++..+....+... .+..+.. .....|++++|+..|++.++ +.|+...... ....
T Consensus 346 ~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~--i~~~~~~~~~---------~~~~ 414 (472)
T 4g1t_A 346 LADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK--INQKSREKEK---------MKDK 414 (472)
T ss_dssp HTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH--SCCCCHHHHH---------HHHH
T ss_pred HhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCcccHHHHH---------HHHH
Confidence 9999999999999998864332221 2223332 23467999999999999998 5565332222 2234
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.+++++.++.+ +.+..+|..++.++...|++++|++.|+++++.+
T Consensus 415 l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 415 LQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 556667777653 5567799999999999999999999999999877
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-16 Score=151.74 Aligned_cols=279 Identities=10% Similarity=-0.021 Sum_probs=178.3
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHH
Q 006396 275 TYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYV 354 (647)
Q Consensus 275 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 354 (647)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++.+.... +.+...+..+...+.
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~ 100 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 100 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence 34455555556666666666666655432 2233334444444445555555555555444432 223444444444455
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHHH
Q 006396 355 KLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTF-MN-AYCEEGNIQRL 432 (647)
Q Consensus 355 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~a 432 (647)
..|++++|...++++.+..+. +...+..+... .|+......+ .. .+...|++++|
T Consensus 101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~A 157 (327)
T 3cv0_A 101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEYREC 157 (327)
T ss_dssp HTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccHHHH
Confidence 555555555555544443211 11111111000 0000111111 22 36677888999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.
T Consensus 158 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 235 (327)
T 3cv0_A 158 RTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDI 235 (327)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 99998887764 4467788888899999999999999999988864 566788899999999999999999999999884
Q ss_pred CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 513 NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISL-----------TKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 513 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
. +.+...+..++.+|...|++++|...++++.+..... +..++..++.++...|++++|..+++++++
T Consensus 236 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~ 314 (327)
T 3cv0_A 236 N-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVE 314 (327)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSH
T ss_pred C-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 2 3358889999999999999999999999998743111 356889999999999999999999886554
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=139.39 Aligned_cols=200 Identities=12% Similarity=0.048 Sum_probs=157.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
+++...+..+...+...|++++|...|+...+.. +.+...+..+...+...|++++|+..+++..+.. |.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4566677778888888888888888888887764 4566778888888888888888888888888764 5567778888
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHH
Q 006396 490 IRSFCKC-----------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYT 557 (647)
Q Consensus 490 ~~~~~~~-----------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 557 (647)
..++... |++++|...+++.++ ..| +...+..++.++...|++++|+..|+++++.+ .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAER--VNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence 8888888 999999999999998 455 58889999999999999999999999999876 6788999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++.++...|++++|+..++++++.. |.+..++..++.++.+.|++++|.+.+++...
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~---------------------P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 213 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA---------------------PKDLDLRVRYASALLLKGKAEEAARAAALEHH 213 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence 99999999999999999999999987 78899999999999999999999999988653
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.7e-16 Score=151.30 Aligned_cols=345 Identities=10% Similarity=-0.006 Sum_probs=198.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCCHhhHHHHHHHHHcc
Q 006396 210 ICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRI---DEALGLLYEMEAVGLKPDLVTYSILIRGLCKQ 286 (647)
Q Consensus 210 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 286 (647)
...+.+.|++++|.++|+...+.| ++..+..+...|...|+. ++|...|++..+. +...+..+...+...
T Consensus 10 a~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 10 ANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 334444555555555555554443 233333344444444444 5555555554432 233333444423332
Q ss_pred C-----CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCH---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCC
Q 006396 287 D-----KVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMI---TEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGN 358 (647)
Q Consensus 287 ~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 358 (647)
+ ++++|+..|++....|. ...+..+...|...+.. ..+.+.+......+ ++.....+...|...+.
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~ 156 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGT 156 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTC
T ss_pred CCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCC
Confidence 2 44555555555555431 22344444444333322 22333444433333 33445556666666665
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG---KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEE----GNIQR 431 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~ 431 (647)
++.+......+...-...++..+..+...|...| +.++|...|+...+.| +++...+..+...|... +++++
T Consensus 157 ~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 157 YDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp GGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred cccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 4444433222222212224447777888888888 8888888888888876 55666556667776554 68889
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHHHH
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKG-L--CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK-----DLRKAF 503 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~A~ 503 (647)
|...|+... .| +...+..+... + ...+++++|...|++..+.| +...+..+...|. .| ++++|.
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 999998877 43 44555566655 3 45789999999999988766 6667777777776 45 899999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 006396 504 QLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTF 575 (647)
Q Consensus 504 ~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~ 575 (647)
.+|++.. . -++..+..|...|.. ..++++|..+|++..+.| +......+...|.. ..+.++|..+
T Consensus 308 ~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~ 380 (452)
T 3e4b_A 308 AHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYVF 380 (452)
T ss_dssp HHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHHH
T ss_pred HHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 9998886 3 367777788877776 348999999999998865 34556667766664 4589999999
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
|+++.+.|
T Consensus 381 ~~~A~~~g 388 (452)
T 3e4b_A 381 SQLAKAQD 388 (452)
T ss_dssp HHHHHTTC
T ss_pred HHHHHHCC
Confidence 99998877
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=2.2e-15 Score=137.48 Aligned_cols=225 Identities=15% Similarity=0.103 Sum_probs=116.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----HHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL--EPS----AVTY 416 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~ 416 (647)
...+..+...+...|++++|...|++..+.. .+...+..+..++...|++++|...++.+..... .++ ...+
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3455556666666666666666666666554 4555555566666666666666666655544210 011 2444
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..+...|...|++++|...|+..... .|+. ..+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~------------------------------------------~~~~~~ 118 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA------------------------------------------DILTKL 118 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH------------------------------------------HHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh------------------------------------------HHHHHH
Confidence 44444445555555555555544442 2221 223334
Q ss_pred CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
|++++|...++++... .| +...+..++..+...|++++|...++++.+.. +.+..++..++.++...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4455555555555542 22 24445555555555555555555555555532 33344555555555555555555555
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
++++++.. |.+...+..++.++.+.|++++|.+.++++++.
T Consensus 196 ~~~al~~~---------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 196 CNKAIEKD---------------------PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhC---------------------HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 55555544 444555555555555555555555555555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.70 E-value=9e-16 Score=135.02 Aligned_cols=199 Identities=17% Similarity=0.060 Sum_probs=126.0
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
|+++..+..++..+...|++++|+..|++++...+. +...+..+...+.+.|++++|...|+++++.. +.+...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 466777888888888888888888888888876543 66778888888888888888888888888764 4566677777
Q ss_pred HHHHHhc-----------CCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHH
Q 006396 140 IHGLCIA-----------GSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTV 208 (647)
Q Consensus 140 ~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 208 (647)
..++... |++++|...+++..+.. |.+...|..+..++...|++++|++.|++..+.. .+...+..
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~ 156 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSA 156 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHH
Confidence 7777777 67777777776666542 2345566666666666666666666666666554 35555666
Q ss_pred HHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 209 LICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 209 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
+..++...|++++|...++...+..+. +...+..+..++...|++++|...+++.
T Consensus 157 la~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 157 LAELYLSMGRLDEALAQYAKALEQAPK-DLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTC--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 666666666666666666666655322 4445555666666666666666655543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.2e-15 Score=145.20 Aligned_cols=347 Identities=13% Similarity=0.041 Sum_probs=231.8
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCH---HHHHHHHHHHHhCCCCCCcccHHHHHHHHh
Q 006396 243 VLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKV---HKAIQLYNEMCSKRISPNSFAHGAILLGLC 319 (647)
Q Consensus 243 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 319 (647)
.+...+.+.|++++|.+.|++..+.| +...+..+...|...|+. ++|+..|++..+. ++..+..+...+.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence 46677888999999999999998875 334445566666777887 8999999998754 5556666666454
Q ss_pred hcC-----CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHCCCCCCccchHHHHHHHHhc
Q 006396 320 EKE-----MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIG---EAVQLYRQLIEKRISPSIVTFNSLIYGFCKN 391 (647)
Q Consensus 320 ~~~-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 391 (647)
..+ +.++|..+|+.....+.. ..+..+...|...+..+ .+.+.+......+ ++.....+...|...
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~ 154 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ 154 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence 444 788999999999987633 25666777777665533 3455555555443 456677788888887
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc----CCH
Q 006396 392 GKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG---NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ----WKL 464 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~ 464 (647)
+.++++......+.+.-...++..+..+...|...| ++++|+..|+...+.| +++...+..+...|... +++
T Consensus 155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~ 233 (452)
T 3e4b_A 155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE 233 (452)
T ss_dssp TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence 755544444332222111223337888888899999 8999999999999887 56666666777777654 799
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-----Chhh
Q 006396 465 QEAVQLLEDMYVIGVTPDQITYNTIIRS-F--CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-----DLKN 536 (647)
Q Consensus 465 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~ 536 (647)
++|...|++.. +-+...+..+... + ...+++++|..+|++..+.| ++..+..|...|. .| ++++
T Consensus 234 ~~A~~~~~~aa----~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~ 305 (452)
T 3e4b_A 234 KTAQALLEKIA----PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA 305 (452)
T ss_dssp HHHHHHHHHHG----GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred HHHHHHHHHHc----CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence 99999999987 3455666777776 4 56899999999999999865 6778888888887 55 9999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH
Q 006396 537 ADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE 612 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 612 (647)
|..+|++.. . .+...+..+...|.. ..++++|..+|+++.+.| ++.+..
T Consensus 306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g-----------------------~~~A~~ 358 (452)
T 3e4b_A 306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG-----------------------QNSADF 358 (452)
T ss_dssp HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT-----------------------CTTHHH
T ss_pred HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC-----------------------hHHHHH
Confidence 999999987 3 366788888877776 349999999999999876 233455
Q ss_pred HHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 613 VMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 613 ~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
.++..|.. ..+.++|..+++++.+.|
T Consensus 359 ~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 359 AIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp HHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 56655553 236666666666666554
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.69 E-value=9e-14 Score=127.69 Aligned_cols=218 Identities=11% Similarity=0.002 Sum_probs=102.0
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 383 SLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGL 458 (647)
Q Consensus 383 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (647)
.+...+...+++++|...|++..+ +.+...+..+...|.. .+++++|...|+...+.+ +...+..+...+
T Consensus 11 ~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 84 (273)
T 1ouv_A 11 GLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLY 84 (273)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHH
Confidence 333344444444444444444443 1122333344444444 444444444444444432 334444444444
Q ss_pred Hh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 459 CK----QWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 459 ~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
.. .+++++|+..+++..+.+ +...+..+...|.. .+++++|..++++..+.+ +...+..+...|..
T Consensus 85 ~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~ 158 (273)
T 1ouv_A 85 YSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDA 158 (273)
T ss_dssp HHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred hCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHc
Confidence 44 445555555555444432 34444444444444 455555555555555432 33444444444444
Q ss_pred ----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhC
Q 006396 531 ----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSN 602 (647)
Q Consensus 531 ----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (647)
.+++++|...++++.+.+ +...+..+...+.. .+++++|+..++++.+.+
T Consensus 159 ~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------- 216 (273)
T 1ouv_A 159 GRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE------------------- 216 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT-------------------
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC-------------------
Confidence 455555555555555432 23444455555555 555555555555555443
Q ss_pred CCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 603 GFPPDQEICEVMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
+ ...+..++.+|.. .|++++|.+.++++.+.|
T Consensus 217 --~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 217 --N--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp --C--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred --C--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 1 4445555555555 555555555555555444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.69 E-value=8.8e-15 Score=133.39 Aligned_cols=225 Identities=12% Similarity=0.031 Sum_probs=155.2
Q ss_pred cccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----ccch
Q 006396 308 SFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP--S----IVTF 381 (647)
Q Consensus 308 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~----~~~~ 381 (647)
...+..+...+...|++++|...++...... .+...+..+..++...|++++|...+++..+..+.. + ..++
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 82 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSF 82 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHH
Confidence 3456778888999999999999999999887 778899999999999999999999999998753321 1 5778
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQ 461 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 461 (647)
..+..++...|++++|...++.+... .|+. ..+...|++++|...++.+.... +.+...+..+...+...
T Consensus 83 ~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 152 (258)
T 3uq3_A 83 ARIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTK 152 (258)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHh
Confidence 88999999999999999999999875 4553 34566677888888888877652 22334455556666666
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
|++++|...++++.+.. +.+...+..+..++...|++++|...++++++.. +.+...+..++.++...|++++|...+
T Consensus 153 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~ 230 (258)
T 3uq3_A 153 SDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETL 230 (258)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 66666666666665543 3344455555555555555555555555555421 123444445555555555555555555
Q ss_pred HHHHH
Q 006396 542 VSLQE 546 (647)
Q Consensus 542 ~~~~~ 546 (647)
+++.+
T Consensus 231 ~~a~~ 235 (258)
T 3uq3_A 231 DAART 235 (258)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.68 E-value=2.2e-14 Score=131.93 Aligned_cols=252 Identities=13% Similarity=0.064 Sum_probs=196.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEP--SAVTYTTFMNA 422 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~ 422 (647)
.+......+...|++++|+..+++.++..+. +...+..+..++...|++++|...++.+...+..+ ....+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~ 83 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI 83 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence 3445667788889999999999998886433 56678888889999999999999999888743122 24457888899
Q ss_pred HHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 423 YCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKA 502 (647)
Q Consensus 423 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 502 (647)
+...|++++|...|+...+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...+++++|
T Consensus 84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A 161 (272)
T 3u4t_A 84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKA 161 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999988764 3456788899999999999999999999988763 55677777777344445699999
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcC-CCCC------HHHHHHHHHHHHhcCCHHH
Q 006396 503 FQLLNQMWLHNLEP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHN-ISLT------KVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 503 ~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~ 571 (647)
...++++.+. .| +...+..++.++...|+ +++|...++++.+.. -.|+ ..++..++..+...|++++
T Consensus 162 ~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 239 (272)
T 3u4t_A 162 DSSFVKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVK 239 (272)
T ss_dssp HHHHHHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999983 44 47888888999988888 888999999998631 1133 2477889999999999999
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGG 622 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (647)
|+..++++++.. |.+..++..+.......|
T Consensus 240 A~~~~~~al~~~---------------------p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 240 ADAAWKNILALD---------------------PTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHHHHHHHHC---------------------TTCHHHHHHHC-------
T ss_pred HHHHHHHHHhcC---------------------ccHHHHHHHhhhhhcccc
Confidence 999999999987 777888887776665554
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.9e-14 Score=129.40 Aligned_cols=203 Identities=10% Similarity=-0.016 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 114 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF 114 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence 3455666667777777777777777776653 3456667777777777788888888887777653 4466677777777
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
+...|++++|..+++++...+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++++
T Consensus 115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 193 (252)
T 2ho1_A 115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP 193 (252)
T ss_dssp HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence 888888888888888877632334 46677777788888888888888888887753 3456677778888888888888
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|...++++++.. |.+...+..++..+...|++++|.+.++++.+.++
T Consensus 194 A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 194 ARQYYDLFAQGG---------------------GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHHTTS---------------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHhC---------------------cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 888888887765 66677777888888888888888888888877553
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-14 Score=131.44 Aligned_cols=246 Identities=14% Similarity=0.034 Sum_probs=197.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC--HHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT--HVTYTVV 454 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l 454 (647)
+...+......+...|++++|...++.+.+.. +.+...+..+..+|...|++++|...++...+....|+ ...|..+
T Consensus 2 n~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l 80 (272)
T 3u4t_A 2 NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY 80 (272)
T ss_dssp ---CHHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence 34456677888999999999999999998864 34555788888999999999999999999988432222 3458889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCCh
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDL 534 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 534 (647)
...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++++++.. +.+...+..++..+...+++
T Consensus 81 g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~ 158 (272)
T 3u4t_A 81 GKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEY 158 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999874 5567889999999999999999999999998842 33588888888444455699
Q ss_pred hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCc-ccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 535 KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFE-ISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
++|...++++.+.. +.+...+..++.++...|+ +++|+..++++++..-. |+.. . .....+
T Consensus 159 ~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~--~------------~~~~~~ 223 (272)
T 3u4t_A 159 VKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKY--K------------DELIEA 223 (272)
T ss_dssp HHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGG--H------------HHHHHH
T ss_pred HHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccc--h------------HHHHHH
Confidence 99999999999863 4456788889999999998 88999999999874300 0000 0 001368
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 611 CEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 611 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
+..++..|.+.|++++|.+.++++++.+|.
T Consensus 224 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 224 NEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 889999999999999999999999997653
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.66 E-value=7e-14 Score=124.36 Aligned_cols=204 Identities=9% Similarity=0.014 Sum_probs=152.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 45566677777777888888888887777653 3456677777777788888888888888877753 456677777788
Q ss_pred HHHhc-CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 492 SFCKC-KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 492 ~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
.+... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+.. +.+...+..++.++...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence 88888 88888888888887732233 36677778888888888888888888887753 34566778888888888888
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC-CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP-PDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++|...++++++.. | .+...+..++..+...|+.++|..+++.+.+..+
T Consensus 164 ~~A~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRV---------------------EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHH---------------------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhC---------------------CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 88888888887765 5 6677777777788888888888888888776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-14 Score=131.35 Aligned_cols=201 Identities=14% Similarity=0.094 Sum_probs=97.2
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...++.+.+.. +.+...+..+...
T Consensus 23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp -------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 3444455555555666666666666555432 3345555555555555666666666665555442 2344455555555
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHH
Confidence 555555555555555555543 3344455555555555555555555555555421 22345555555555555555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...++++.+.. +.+..++..++.++...|++++|...++++++..
T Consensus 179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 55555555532 2334455555555555555555555555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=5.4e-13 Score=122.49 Aligned_cols=224 Identities=11% Similarity=-0.016 Sum_probs=190.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
++..+..+...+...|++++|...|++..+. .+...+..+...+.. .+++++|...|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 5667777888888889999999999988873 245677778888888 899999999999988764 677888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 418 TFMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK----QWKLQEAVQLLEDMYVIGVTPDQITYNTI 489 (647)
Q Consensus 418 ~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 489 (647)
.+...|.. .+++++|+..|+...+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 152 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL 152 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence 88888888 999999999999988864 67788888888888 899999999999999865 56677788
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 490 IRSFCK----CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 490 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
...|.. .+++++|...+++..+.+ ++..+..+..+|.. .+++++|...++++.+.+ +...+..+..
T Consensus 153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~ 226 (273)
T 1ouv_A 153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA 226 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence 888887 899999999999998853 56778888999999 999999999999999864 3667888889
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcC
Q 006396 562 AHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
.+.. .+++++|+.+++++.+.+
T Consensus 227 ~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 227 MQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9998 999999999999999887
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=5.5e-12 Score=128.13 Aligned_cols=443 Identities=13% Similarity=0.048 Sum_probs=294.8
Q ss_pred HHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC---hHHHHHH
Q 006396 149 MEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN---VEEGLKL 225 (647)
Q Consensus 149 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~ 225 (647)
..+....|+..+..+ +.|..+|..++..+.+.+.++.+..+|+++... .+.....|...+....+.++ ++.+.++
T Consensus 48 ~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~l 125 (679)
T 4e6h_A 48 ESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPV 125 (679)
T ss_dssp CSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHH
Confidence 344555556665553 579999999999999999999999999999887 33356678888888888888 9999999
Q ss_pred HHHHHhCCC-CcCcccHHHHHHHHHhcCCh--------hHHHHHHHHHHH-CCC-CCC-HhhHHHHHHHHHc--------
Q 006396 226 REVMLSQGF-KLNVIAYSVLLSSMCKSGRI--------DEALGLLYEMEA-VGL-KPD-LVTYSILIRGLCK-------- 285 (647)
Q Consensus 226 ~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~~-~~~~~~l~~~~~~-------- 285 (647)
|+..+.... .|++..|...+....+.++. +...++|+.... .|. .++ ...|...+.....
T Consensus 126 feRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~e 205 (679)
T 4e6h_A 126 LARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFE 205 (679)
T ss_dssp HHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHH
Confidence 999998741 36777888888776665553 334577776554 465 554 4577777765432
Q ss_pred -cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHH
Q 006396 286 -QDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKE---MITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGE 361 (647)
Q Consensus 286 -~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 361 (647)
.++++.+..+|+.++.. |... +..+...|..-. +...+.+++.. ...+++.
T Consensus 206 eq~~~~~~R~iy~raL~i---P~~~-~~~~w~~Y~~fe~~~~~~~a~~~~~e---------------------~~~~y~~ 260 (679)
T 4e6h_A 206 EQQRVQYIRKLYKTLLCQ---PMDC-LESMWQRYTQWEQDVNQLTARRHIGE---------------------LSAQYMN 260 (679)
T ss_dssp HHHHHHHHHHHHHHHTTS---CCSS-HHHHHHHHHHHHHHHCTTTHHHHHHH---------------------HHHHHHH
T ss_pred HHhHHHHHHHHHHHHHhC---ccHH-HHHHHHHHHHHHHhcCcchHHHHHHH---------------------hhHHHHH
Confidence 33467788888888752 3221 111211111100 00001111111 0112333
Q ss_pred HHHHHHHHHHC--CC----C-----------C--C------ccchHHHHHHHHhcC-------CHHHHHHHHHHHHHCCC
Q 006396 362 AVQLYRQLIEK--RI----S-----------P--S------IVTFNSLIYGFCKNG-------KVADARRLLDTIKLHGL 409 (647)
Q Consensus 362 a~~~~~~~~~~--~~----~-----------~--~------~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~ 409 (647)
|...+..+... ++ + | + ...|...+..-...+ ..+.+..+|++.... +
T Consensus 261 Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~ 339 (679)
T 4e6h_A 261 ARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-V 339 (679)
T ss_dssp HHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-c
Confidence 44444332210 11 1 1 0 012333333222222 123455678877765 3
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---------
Q 006396 410 EPSAVTYTTFMNAYCEEGNIQRLL-ALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV--------- 479 (647)
Q Consensus 410 ~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------- 479 (647)
+-....|...+..+...|+.++|. .+|+..... .+.+...|...+....+.|++++|.++|+++++...
T Consensus 340 p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~ 418 (679)
T 4e6h_A 340 CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMED 418 (679)
T ss_dssp TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhc
Confidence 557888888888888899998996 999998864 345666677788888889999999999999886410
Q ss_pred CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc-CChhhHHHHHHHHHH
Q 006396 480 TPD------------QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN-GDLKNADCLLVSLQE 546 (647)
Q Consensus 480 ~~~------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 546 (647)
.|+ ..+|...+....+.|+.+.|..+|.++.+....+....|...+..-.+. ++++.|.++|+..++
T Consensus 419 ~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk 498 (679)
T 4e6h_A 419 DPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLK 498 (679)
T ss_dssp STTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHH
T ss_pred cCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 132 2467888888888999999999999998841112334444433333344 459999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC---CCHHHHHHHHHHHHcCCC
Q 006396 547 HNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP---PDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 547 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~ 623 (647)
. .+.+...|...+......|+.+.|..+|++++... + .....|..++..-.+.|+
T Consensus 499 ~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~---------------------~~~~~~~~lw~~~~~fE~~~G~ 556 (679)
T 4e6h_A 499 Y-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI---------------------SDSHLLKMIFQKVIFFESKVGS 556 (679)
T ss_dssp H-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS---------------------SSTTHHHHHHHHHHHHHHHTCC
T ss_pred H-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc---------------------CCHHHHHHHHHHHHHHHHHcCC
Confidence 6 45566777888888888999999999999999865 3 136788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCC
Q 006396 624 LGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 624 ~~~A~~~~~~~~~~~~~~~ 642 (647)
.+.+..+.+++.+..|..+
T Consensus 557 ~~~~~~v~~R~~~~~P~~~ 575 (679)
T 4e6h_A 557 LNSVRTLEKRFFEKFPEVN 575 (679)
T ss_dssp SHHHHHHHHHHHHHSTTCC
T ss_pred HHHHHHHHHHHHHhCCCCc
Confidence 9999999999998776543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=2.2e-14 Score=129.41 Aligned_cols=214 Identities=9% Similarity=0.017 Sum_probs=165.9
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
.....+..+...+...|++++|...|+++.+..+ .+...+..+...+...|++++|...++.+.... +.+...+..+.
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK-EDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp ---------------------CCTTHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 3456677788889999999999999999988643 367788889999999999999999999988764 45788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLR 500 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 500 (647)
..+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 176 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD 176 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999998764 4577888899999999999999999999999864 567888999999999999999
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
+|...++++.+.. +.+..++..++.+|...|++++|...++++.+.. +.+..++..+.
T Consensus 177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~ 234 (243)
T 2q7f_A 177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKK 234 (243)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHT
T ss_pred HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHH
Confidence 9999999998842 3458899999999999999999999999999853 33445555443
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.65 E-value=3.2e-12 Score=129.84 Aligned_cols=456 Identities=10% Similarity=0.014 Sum_probs=256.5
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCC---hhhHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGF---AEVAKG 119 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~---~~~a~~ 119 (647)
..++-...|+..+..++ .|...|..++..+.+.+.++.++.+|++++.. ++.....|...+..-.+.|+ ++.+..
T Consensus 47 ~~~d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~ 124 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP 124 (679)
T ss_dssp CCSCHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred CCHHHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence 34555666777776565 78888888888888888888888888888775 34466778888888888888 888888
Q ss_pred HHHHHHhCC-CCCCHHHHHHHHHHHHhcCCH--------HHHHHHHHHHhh-CCC-CC-ChhhHHHHHHHHHh-------
Q 006396 120 LFCLMLKYG-LHPDAFSYNILIHGLCIAGSM--------EEALEFTNDMGR-HGV-EP-DAITYSILAKGFHL------- 180 (647)
Q Consensus 120 ~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~------- 180 (647)
+|++.+... .+|++..|...+....+.++. +...++|+.... .|. .+ +...|...+.....
T Consensus 125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~ 204 (679)
T 4e6h_A 125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF 204 (679)
T ss_dssp HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence 888888763 127777777777665554443 334467776554 344 33 34567776665432
Q ss_pred --cCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHH
Q 006396 181 --LSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEAL 258 (647)
Q Consensus 181 --~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 258 (647)
.++.+.+.++|++.+......-..+|..........+. ..+.+++.+. ..+++.|.
T Consensus 205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~-~~a~~~~~e~---------------------~~~y~~Ar 262 (679)
T 4e6h_A 205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQ-LTARRHIGEL---------------------SAQYMNAR 262 (679)
T ss_dssp HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCT-TTHHHHHHHH---------------------HHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCc-chHHHHHHHh---------------------hHHHHHHH
Confidence 33466777888887742111011122211111100000 0011111100 01111222
Q ss_pred HHHHHHHHC--CC----C-----------C-----C---HhhHHHHHHHHHccC-------CHHHHHHHHHHHHhCCCCC
Q 006396 259 GLLYEMEAV--GL----K-----------P-----D---LVTYSILIRGLCKQD-------KVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 259 ~~~~~~~~~--~~----~-----------~-----~---~~~~~~l~~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 306 (647)
..+.++... ++ + | + ...|...+..--..+ ..+.+..+|++++.. ++.
T Consensus 263 ~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 263 SLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 222221100 00 0 0 0 112333332222211 123345566666654 234
Q ss_pred CcccHHHHHHHHhhcCCHHHHH-HHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------CC
Q 006396 307 NSFAHGAILLGLCEKEMITEAR-MYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRI---------SP 376 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------~~ 376 (647)
....+...+..+...|+.++|. .+++..... ++.+...+-..+...-+.|+++.|.++|+++++... .|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 5555666666666666666775 777777653 344555666666677777777777777777665310 12
Q ss_pred C------------ccchHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhC
Q 006396 377 S------------IVTFNSLIYGFCKNGKVADARRLLDTIKLH-GLEPSAVTYTTFMNAYCEE-GNIQRLLALLQEMETK 442 (647)
Q Consensus 377 ~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~ 442 (647)
+ ...|...+....+.++.+.|..+|....+. + ......|...+..-.+. ++++.|..+|+...+.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 235666666666777788888888877765 2 12223333333222333 4478888888877765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006396 443 AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSAT 520 (647)
Q Consensus 443 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~ 520 (647)
.+.+...|...+......|+.+.|..+|++.+....++ ....|...+..-...|+.+.+..+.+++.+. .|+...
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~ 576 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNK 576 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCH
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcH
Confidence 23355556666776677788888888888877653211 2356777777777788888888888888773 344333
Q ss_pred HHHHHHHH
Q 006396 521 YNILIDGL 528 (647)
Q Consensus 521 ~~~l~~~~ 528 (647)
...+++-|
T Consensus 577 ~~~f~~ry 584 (679)
T 4e6h_A 577 LEEFTNKY 584 (679)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHh
Confidence 33334444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.65 E-value=4.8e-14 Score=134.10 Aligned_cols=250 Identities=11% Similarity=0.018 Sum_probs=209.6
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK-VADARRLLDTIKLHGLEPSAVTYTTFM 420 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~ 420 (647)
+...+..+..++...|++++|+..+++++...+. +...|..+..++...|+ +++|+..+++++... +.+...|..+.
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 3556777888889999999999999999987544 67788889999999996 999999999998864 55788899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCH
Q 006396 421 NAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK-CKDL 499 (647)
Q Consensus 421 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 499 (647)
.++...|++++|+..|+.+.+.. +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~ 251 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYN 251 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcc
Confidence 99999999999999999999874 4577889999999999999999999999999975 5678899999999998 5665
Q ss_pred HHH-----HHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----
Q 006396 500 RKA-----FQLLNQMWLHNLEP-TSATYNILIDGLCVNG--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG---- 567 (647)
Q Consensus 500 ~~A-----~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---- 567 (647)
++| +..+++++. +.| +...|..+..++...| ++++|.+.+.++ +. -+.+...+..++.++.+.|
T Consensus 252 ~eA~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~ 327 (382)
T 2h6f_A 252 DRAVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQC 327 (382)
T ss_dssp SHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccc
Confidence 777 588999988 455 5889999999999988 689999999988 43 3445668899999998874
Q ss_pred -----CHHHHHHHHHHH-HHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 568 -----DVHKAMTFFCQM-VEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 568 -----~~~~A~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
..++|+.+++++ .+.+ |.....|..++..+..
T Consensus 328 ~~~~~~~~~A~~~~~~l~~~~D---------------------P~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 328 DNKEDILNKALELCEILAKEKD---------------------TIRKEYWRYIGRSLQS 365 (382)
T ss_dssp SSHHHHHHHHHHHHHHHHHTTC---------------------GGGHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhC---------------------chhHHHHHHHHHHHHH
Confidence 358999999999 7766 5667788777766654
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.64 E-value=3.1e-14 Score=135.38 Aligned_cols=233 Identities=6% Similarity=0.022 Sum_probs=200.8
Q ss_pred cchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 379 VTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGN-IQRLLALLQEMETKAIGPTHVTYTVVIKG 457 (647)
Q Consensus 379 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 457 (647)
..+..+...+...|++++|...+++++... +-+...|+.+..++...|+ +++|+..|+++.... +-+...|..+..+
T Consensus 98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 98 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 456777888889999999999999998864 5568889999999999996 999999999999874 4577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhh-cCChh
Q 006396 458 LCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCV-NGDLK 535 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~-~g~~~ 535 (647)
+...|++++|+..++++++.. +.+...|..+..++...|++++|+..++++++ +.| +...|+.++.++.. .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999975 66888999999999999999999999999999 445 68999999999999 66658
Q ss_pred hH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 536 NA-----DCLLVSLQEHNISLTKVAYTTIIKAHCAEG--DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 536 ~A-----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
+| +..++++++.. +-+...|..+..++...| ++++|++.++++ +.. +.+.
T Consensus 253 eA~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~---------------------p~~~ 309 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS---------------------HSSP 309 (382)
T ss_dssp HHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT---------------------CCCH
T ss_pred HHHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC---------------------CCCH
Confidence 88 58899999853 446679999999999988 689999999888 544 7778
Q ss_pred HHHHHHHHHHHcCC--------C-HHHHHHHHHHH-HhCCC
Q 006396 609 EICEVMLIAFHQGG--------D-LGSVFELAAVM-IKSGL 639 (647)
Q Consensus 609 ~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~~~~ 639 (647)
.++..++.+|.+.| + +++|+++++++ .+.++
T Consensus 310 ~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP 350 (382)
T 2h6f_A 310 YLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDT 350 (382)
T ss_dssp HHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc
Confidence 99999999999874 3 58999999998 77553
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-15 Score=137.46 Aligned_cols=247 Identities=10% Similarity=-0.110 Sum_probs=175.7
Q ss_pred hcCChhHHHHHHHHHHhCCC---CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhh
Q 006396 40 NLRHTDIMWDLYDDIKVSET---PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 116 (647)
..++++.|...|++++...+ +.++.++..++..+...|++++|+..|+++....+ .+..++..++..+...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP-DMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHccCHHH
Confidence 45677888888888876432 23456778888888888888888888888877643 357788888888888888888
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLI 196 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 196 (647)
|...|+++++.. +.+..++..+...+...|++++|...++++.+. .|+..........+...|++++|...+++...
T Consensus 96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 888888888764 446778888888888888888888888888774 34444444455555667888888888877776
Q ss_pred cCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc---CcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 006396 197 KGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL---NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDL 273 (647)
Q Consensus 197 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 273 (647)
.. |+......++..+...++.++|.+.++......... +...+..+..++...|++++|...|++.... .|+.
T Consensus 173 ~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~ 248 (275)
T 1xnf_A 173 KS--DKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVHN 248 (275)
T ss_dssp HS--CCCSTHHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCTT
T ss_pred cC--CcchHHHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cchh
Confidence 52 222333346677777888888888888876653211 1467788888888899999999999888875 3432
Q ss_pred hhHHHHHHHHHccCCHHHHHHHH
Q 006396 274 VTYSILIRGLCKQDKVHKAIQLY 296 (647)
Q Consensus 274 ~~~~~l~~~~~~~~~~~~a~~~~ 296 (647)
+.....++...|++++|++.+
T Consensus 249 --~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 249 --FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp --CHHHHHHHHHHHHHHHC----
T ss_pred --HHHHHHHHHHHHHHHhhHHHH
Confidence 233345666778888877765
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.63 E-value=8.1e-15 Score=135.08 Aligned_cols=249 Identities=10% Similarity=-0.038 Sum_probs=162.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCC---CcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 73 LCQQSRLQDAILFLQETAGKEF---GPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
+...|++++|+..|+++..... +.+..++..++..+...|++++|...|+++.+.. +.+..++..+...+...|++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~ 93 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF 93 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence 3445777888888887776532 1234567777777888888888888888877764 44567777777778888888
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
++|.+.|+++.+.. +.+...+..+..++...|++++|.+.++++... .|+.......+..+...|++++|...++..
T Consensus 94 ~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 94 DAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 88888888777752 345677777777888888888888888887765 344444444444556667888888888766
Q ss_pred HhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC
Q 006396 230 LSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKP---DLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISP 306 (647)
Q Consensus 230 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 306 (647)
.... +++.. ...++..+...++.++|...+++........ +...+..+...+...|++++|...|+++... .|
T Consensus 171 ~~~~-~~~~~-~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQW-GWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCST-HHHHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchH-HHHHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 6653 22333 3346666677777777777777765432110 1456777777777888888888888887765 23
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYF 331 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~ 331 (647)
+. +......+...+++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 223344555666777666554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-13 Score=118.08 Aligned_cols=169 Identities=12% Similarity=0.073 Sum_probs=140.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 526 (647)
+...|..+...+...|++++|+..|++.++.. |.+..++..+..+|...|++++|...+..+.... +.+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 56778888888888888888888888888864 5567788888888888899999999888888732 335777788888
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP 606 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (647)
.+...++++.|...+.++.+.. +.+...+..++.++...|++++|+..|+++++.. |.
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~---------------------p~ 139 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK---------------------PG 139 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TT
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc---------------------ch
Confidence 8888899999999998888753 4566788888889999999999999999998877 77
Q ss_pred CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 607 DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 607 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
+..+|..++.+|.+.|++++|.+.++++++.+|
T Consensus 140 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 172 (184)
T 3vtx_A 140 FIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEE 172 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTH
T ss_pred hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCc
Confidence 788899999999999999999999999888654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.61 E-value=3.3e-13 Score=122.31 Aligned_cols=199 Identities=13% Similarity=-0.002 Sum_probs=120.2
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 381 FNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCK 460 (647)
Q Consensus 381 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 460 (647)
+..+...+...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+..
T Consensus 40 ~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 40 YIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 3444444555555555555555544432 2344555555555666666666666666655442 2345555666666666
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|..
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~ 196 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQ 196 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 666666666666665522222 34456666666777777777777777766632 2246666777777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++++.+.. +.+...+..++..+...|++++|.++++++.+..
T Consensus 197 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 197 YYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 777776642 3445566667777777777777777777777665
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.3e-15 Score=154.43 Aligned_cols=152 Identities=13% Similarity=0.155 Sum_probs=121.8
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKL---HGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTV 453 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 453 (647)
-..+|+.+|.+|++.|++++|.++|..|.+ .|+.||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345799999999999999999999988764 47889999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC------HHHHHHHHH
Q 006396 454 VIKGLCKQWK-LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT------SATYNILID 526 (647)
Q Consensus 454 l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~~l~~ 526 (647)
+|.++++.|+ .++|.++|++|.+.|+.||..+|+.++..+.+. ..++..+++ ..++.|+ ..+...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 9999999887 578899999999999999999999888765553 344444444 2234443 444556667
Q ss_pred HHhhcCC
Q 006396 527 GLCVNGD 533 (647)
Q Consensus 527 ~~~~~g~ 533 (647)
.|.+.+.
T Consensus 281 l~s~d~~ 287 (1134)
T 3spa_A 281 VYAKDGR 287 (1134)
T ss_dssp HHCCCSC
T ss_pred HHccCCC
Confidence 7776653
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-15 Score=154.19 Aligned_cols=152 Identities=12% Similarity=0.136 Sum_probs=125.1
Q ss_pred CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 006396 341 QDVVLYNIMIDGYVKLGNIGEAVQLYRQLIE---KRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYT 417 (647)
Q Consensus 341 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 417 (647)
.-..+|+++|.+|++.|++++|.++|..|.+ .|+.||..+||.+|.+|++.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3467999999999999999999999988764 4789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC------HHHHHHHH
Q 006396 418 TFMNAYCEEGNI-QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD------QITYNTII 490 (647)
Q Consensus 418 ~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~ 490 (647)
++|.++++.|+. ++|.++|++|.+.|+.||..+|+.++.+..+. .+++.++++ ..++.|+ ..+...|.
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~ 279 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLR 279 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence 999999999984 78999999999999999999999998765543 344444444 2234443 23334455
Q ss_pred HHHHhcC
Q 006396 491 RSFCKCK 497 (647)
Q Consensus 491 ~~~~~~~ 497 (647)
+.|.+.+
T Consensus 280 dl~s~d~ 286 (1134)
T 3spa_A 280 DVYAKDG 286 (1134)
T ss_dssp HHHCCCS
T ss_pred HHHccCC
Confidence 5555543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.60 E-value=8.6e-13 Score=117.24 Aligned_cols=200 Identities=12% Similarity=0.028 Sum_probs=120.4
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
.+..+...+...|++++|...++.+.... +.+...+..+...|...|++++|...++.+.+.. +.+...+..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 10 IKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 34444444555555555555555544432 2334455555555666666666666666655542 234555666666666
Q ss_pred hc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 460 KQ-WKLQEAVQLLEDMYVIGVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 460 ~~-g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
.. |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..++.++...|++++|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 166 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDA 166 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHH
Confidence 66 66777776666666522222 24556666667777777777777777776631 22466677777777777777777
Q ss_pred HHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNIS-LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...++++.+.. + .+...+..+...+...|+.++|..+++.+.+..
T Consensus 167 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 167 DYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp HHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 77777777643 3 455566666666677777777777777776654
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.58 E-value=4e-14 Score=138.99 Aligned_cols=277 Identities=9% Similarity=0.025 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCc----cchHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSI----VTFNSLIYGFCKNGKVADARRLLDTIKLH----G-LEPSAVT 415 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 415 (647)
.+..+...+...|++++|+..|+++++..+. +. ..+..+...+...|++++|...+++.... + .+.....
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 3444556677777788888777777765322 22 35666677777778888887777766542 1 1223456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC----C-CCCCHHHHHHHHHHHHhcCC-----------------HHHHHHHHHH
Q 006396 416 YTTFMNAYCEEGNIQRLLALLQEMETK----A-IGPTHVTYTVVIKGLCKQWK-----------------LQEAVQLLED 473 (647)
Q Consensus 416 ~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~a~~~~~~ 473 (647)
+..+...|...|++++|...+++.... + .+....++..+...+...|+ +++|...+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 667777788888888888888776543 1 11123466777777888888 8888888877
Q ss_pred HHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCChhhHHHHHHH
Q 006396 474 MYVI----GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNILIDGLCVNGDLKNADCLLVS 543 (647)
Q Consensus 474 ~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~ 543 (647)
..+. +. +....++..+...|...|++++|...+++..+... .++ ...+..++.+|...|++++|...+++
T Consensus 209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 288 (411)
T 4a1s_A 209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR 288 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 6542 11 11234677788888899999999999988876210 011 34778888999999999999999988
Q ss_pred HHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH
Q 006396 544 LQEHNI--S---LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF 618 (647)
Q Consensus 544 ~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 618 (647)
+.+... . ....++..++.++...|++++|..+++++++..-... ..+....++..++.+|
T Consensus 289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------------~~~~~~~~~~~la~~~ 353 (411)
T 4a1s_A 289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG---------------DRIGEARACWSLGNAH 353 (411)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC---------------ChHHHHHHHHHHHHHH
Confidence 875310 0 1145778888999999999999999999886430000 0012256788899999
Q ss_pred HcCCCHHHHHHHHHHHHhC
Q 006396 619 HQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 619 ~~~g~~~~A~~~~~~~~~~ 637 (647)
.+.|++++|.+.++++++.
T Consensus 354 ~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 354 SAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.3e-13 Score=132.23 Aligned_cols=277 Identities=13% Similarity=0.050 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GLEP-SA 413 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~ 413 (647)
...+......+...|++++|...|++..+..+. + ..++..+...+...|++++|...+++.... +..| ..
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 344445555666666666666666666654322 2 134555566666666666666666654321 1111 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHH
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWK--------------------LQEAV 468 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~ 468 (647)
..+..+...|...|++++|...++...+... .++ ..++..+...+...|+ +++|.
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~ 167 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAV 167 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHH
Confidence 4555666667777777777777766544210 011 3356666677777777 77777
Q ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC-CCCC----HHHHHHHHHHHhhcCChhhHH
Q 006396 469 QLLEDMYVI----GVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHN-LEPT----SATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 469 ~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~----~~~~~~l~~~~~~~g~~~~A~ 538 (647)
..+++..+. +.. ....++..+...|...|++++|...+++..+.. -.++ ..++..++.+|...|++++|.
T Consensus 168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 247 (406)
T 3sf4_A 168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 247 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence 777766542 111 113456777778888888888888888877520 0111 346777888888888888888
Q ss_pred HHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHH
Q 006396 539 CLLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICE 612 (647)
Q Consensus 539 ~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 612 (647)
..++++.+. +..+. ..++..++..+...|++++|...++++++..-. .+. +....++.
T Consensus 248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~ 311 (406)
T 3sf4_A 248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------------LNDRIGEGRACW 311 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHh----------------cCCcHHHHHHHH
Confidence 888887752 11111 346777888888888888888888888764200 000 11256777
Q ss_pred HHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 613 VMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 613 ~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++.+|...|++++|.+.++++++
T Consensus 312 ~la~~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 312 SLGNAYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Confidence 888888888888888888888764
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-12 Score=122.24 Aligned_cols=218 Identities=12% Similarity=-0.026 Sum_probs=152.0
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHh-------cCCh-------hHHHHHHHHhhc-CCCCcCHHhHHHHHHHHH
Q 006396 45 DIMWDLYDDIKVSETPRNVYTNSIVIDGLCQ-------QSRL-------QDAILFLQETAG-KEFGPSVVSLNAIMSRYC 109 (647)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 109 (647)
+.|...|++++...| .++..|..++..+.. .|++ ++|+.+|++++. ..+ .+...|..++..+.
T Consensus 33 ~~a~~~~~~al~~~p-~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p-~~~~~~~~~~~~~~ 110 (308)
T 2ond_A 33 KRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADYEE 110 (308)
T ss_dssp HHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHH
Confidence 678889999887554 788889888887763 4776 889999999887 333 35668888888888
Q ss_pred hcCChhhHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHH-hcCChhhH
Q 006396 110 KLGFAEVAKGLFCLMLKYGLHPDAF-SYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFH-LLSQISGA 187 (647)
Q Consensus 110 ~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~a 187 (647)
+.|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|++..+.. +.+...|...+.... ..|+.++|
T Consensus 111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 8899999999999988763 22343 78888888888888888888888887753 334444443333322 25777777
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCc--CcccHHHHHHHHHhcCChhHHHHHHHHH
Q 006396 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQG-FKL--NVIAYSVLLSSMCKSGRIDEALGLLYEM 264 (647)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 264 (647)
.++|++.++..+. +...|..++..+.+.|++++|..+|+...... +.| ....|..++....+.|+.+.|..+++++
T Consensus 189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777665221 45566666667777777777777777777652 232 3345666666666677777777777766
Q ss_pred HHC
Q 006396 265 EAV 267 (647)
Q Consensus 265 ~~~ 267 (647)
.+.
T Consensus 268 ~~~ 270 (308)
T 2ond_A 268 FTA 270 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=9.4e-12 Score=116.12 Aligned_cols=219 Identities=10% Similarity=0.041 Sum_probs=169.1
Q ss_pred HHHHHHHHHHHHCCCCCCccchHHHHHHHH-------hcCCH-------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 006396 360 GEAVQLYRQLIEKRISPSIVTFNSLIYGFC-------KNGKV-------ADARRLLDTIKLHGLEPSAVTYTTFMNAYCE 425 (647)
Q Consensus 360 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 425 (647)
++|..+|++.+... +.++..|..++..+. ..|++ ++|..+|++....-.+.+...|..++..+..
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67778888887753 236667777666664 34775 8899999998873124456788888888999
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 006396 426 EGNIQRLLALLQEMETKAIGPT-HV-TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC-KCKDLRKA 502 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A 502 (647)
.|++++|..+|++..+. .|+ .. .|..++..+.+.|++++|..+|+++.+.. +.+...|...+.... ..|++++|
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A 188 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVA 188 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999998875 443 33 78888888888999999999999998864 445555554444322 36999999
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 503 FQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHN-ISL--TKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 503 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..+|+++++.. +.+...|..++..+...|++++|..+|+++++.. ++| ....|..++......|+.++|..+++++
T Consensus 189 ~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 189 FKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999998832 2358888999999999999999999999999852 354 3558888888888999999999999999
Q ss_pred HHcC
Q 006396 580 VEKG 583 (647)
Q Consensus 580 ~~~~ 583 (647)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8865
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.8e-14 Score=136.34 Aligned_cols=264 Identities=13% Similarity=0.022 Sum_probs=168.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCccchHHHHHHHHhcCCHHHHHHHHHHHHHCC----C-CCCHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----RIS-PSIVTFNSLIYGFCKNGKVADARRLLDTIKLHG----L-EPSAV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~ 414 (647)
++..+...+...|++++|...+++.... +.. ....++..+...+...|++++|...+++..... . .....
T Consensus 49 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 128 (406)
T 3sf4_A 49 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 128 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHH
Confidence 3444555555555555555555554332 101 112344455555666666666666665544310 0 00133
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 006396 415 TYTTFMNAYCEEGN--------------------IQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 415 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
.+..+...|...|+ +++|...++..... +..| ...++..+...+...|++++|..
T Consensus 129 ~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 208 (406)
T 3sf4_A 129 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 208 (406)
T ss_dssp HHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHH
T ss_pred HHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 55666666777777 77777777665431 1111 23467777888888999999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+++..+... .++ ..++..+...|...|++++|...+++.... +..+ ...++..++.+|...|++++|..
T Consensus 209 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 288 (406)
T 3sf4_A 209 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 288 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 9888775310 112 236778888999999999999999988752 1111 15678889999999999999999
Q ss_pred HHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHH
Q 006396 540 LLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEV 613 (647)
Q Consensus 540 ~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 613 (647)
.++++.+. +..+. ..++..++.++...|++++|...++++++..- ..+. +....++..
T Consensus 289 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~ 352 (406)
T 3sf4_A 289 YHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR----------------EVGDKSGELTARLN 352 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------------HTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----------------HhcCCcchhHHHHH
Confidence 99998863 11111 44778899999999999999999999886420 0011 223567777
Q ss_pred HHHHHHcCCCH
Q 006396 614 MLIAFHQGGDL 624 (647)
Q Consensus 614 l~~~~~~~g~~ 624 (647)
++.++...|+.
T Consensus 353 l~~~~~~~g~~ 363 (406)
T 3sf4_A 353 LSDLQMVLGLS 363 (406)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHhhHh
Confidence 88888877765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.3e-13 Score=128.43 Aligned_cols=277 Identities=13% Similarity=0.061 Sum_probs=190.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHH
Q 006396 346 YNIMIDGYVKLGNIGEAVQLYRQLIEKRISPS----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GL-EPSAVTY 416 (647)
Q Consensus 346 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~ 416 (647)
+......+...|++++|...++++.+..+. + ...+..+...+...|++++|...++..... +. +.....+
T Consensus 8 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 86 (338)
T 3ro2_A 8 LALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 86 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence 334455666777777777777777665322 2 245556666777777777777777665431 11 1124456
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCC--------------------HHHHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWK--------------------LQEAVQLL 471 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~a~~~~ 471 (647)
..+...|...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+
T Consensus 87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 166 (338)
T 3ro2_A 87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY 166 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence 6777777888888888888777654210 112 2366677777778888 88888888
Q ss_pred HHHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHHHH
Q 006396 472 EDMYVI----GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADCLL 541 (647)
Q Consensus 472 ~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~ 541 (647)
++..+. +. +....++..+...+...|++++|...+++..+. +..+ ...++..++.++...|++++|...+
T Consensus 167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 246 (338)
T 3ro2_A 167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY 246 (338)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 776542 11 112346778888899999999999999988752 1111 1347888899999999999999999
Q ss_pred HHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 542 VSLQEHNI-SLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 542 ~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
+++.+... .++ ..++..++.++...|++++|...++++++..-... ..+....++..++.
T Consensus 247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~---------------~~~~~~~~~~~la~ 311 (338)
T 3ro2_A 247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK---------------DRIGEGRACWSLGN 311 (338)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT---------------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcC---------------CcHHHHHHHHHHHH
Confidence 99875310 011 44778889999999999999999999986430000 00112567889999
Q ss_pred HHHcCCCHHHHHHHHHHHHhCC
Q 006396 617 AFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 617 ~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
+|.+.|++++|.+.++++++..
T Consensus 312 ~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 312 AYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHcCChHHHHHHHHHHHHHH
Confidence 9999999999999999998754
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.4e-13 Score=133.77 Aligned_cols=210 Identities=9% Similarity=-0.017 Sum_probs=164.1
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 394 VADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI-QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 394 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
++++...++...... +.+...+..+...+...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666555432 44677777788888888888 88888888877653 3456778888888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc--------CCh
Q 006396 473 DMYVIGVTPDQITYNTIIRSFCKC---------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVN--------GDL 534 (647)
Q Consensus 473 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~--------g~~ 534 (647)
++.+. .|+...+..+..++... |++++|...++++++. .| +...|..++.+|... |++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 88875 46667788888888888 8888888888888873 44 578888888888888 888
Q ss_pred hhHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 535 KNADCLLVSLQEHNIS---LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++|...|+++.+.. + .+...|..++.++...|++++|+..|+++++.. |.+..++
T Consensus 238 ~~A~~~~~~al~~~-p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------p~~~~a~ 295 (474)
T 4abn_A 238 QQALSAYAQAEKVD-RKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD---------------------PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHC-GGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHH
T ss_pred HHHHHHHHHHHHhC-CCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHHH
Confidence 89999988888753 3 367788888888888999999999999888877 6778888
Q ss_pred HHHHHHHHcCCCHHHHHHHH
Q 006396 612 EVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 612 ~~l~~~~~~~g~~~~A~~~~ 631 (647)
..++.++...|++++|.+.+
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888887644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.6e-13 Score=132.17 Aligned_cols=239 Identities=13% Similarity=0.067 Sum_probs=157.0
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----R-ISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH----G-LEPSAV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~ 414 (647)
.+..+...|...|++++|...+++.++. + .+....++..+...+...|++++|...+++.... + .+....
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 167 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR 167 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 3444455555555555555555554432 0 0112234455555566666666666666554432 0 011234
Q ss_pred HHHHHHHHHHHcCC-----------------HHHHHHHHHHHHhC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 415 TYTTFMNAYCEEGN-----------------IQRLLALLQEMETK----AIG-PTHVTYTVVIKGLCKQWKLQEAVQLLE 472 (647)
Q Consensus 415 ~~~~l~~~~~~~~~-----------------~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~ 472 (647)
.+..+...|...|+ +++|...+++..+. +.. .....+..+...+...|++++|...++
T Consensus 168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 247 (411)
T 4a1s_A 168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ 247 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 56666677777777 77777777665432 111 123467777888888999999999998
Q ss_pred HHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCC--CC---CCHHHHHHHHHHHhhcCChhhHHHHHH
Q 006396 473 DMYVIGVT-PD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLHN--LE---PTSATYNILIDGLCVNGDLKNADCLLV 542 (647)
Q Consensus 473 ~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---p~~~~~~~l~~~~~~~g~~~~A~~~~~ 542 (647)
+..+.... .+ ..++..+...|...|++++|...++++.... .. ....++..++.+|...|++++|...++
T Consensus 248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 327 (411)
T 4a1s_A 248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN 327 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88763211 12 2367888889999999999999999887621 11 125678889999999999999999999
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 543 SLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++.+. +..+ ...++..++.++...|++++|..+++++++..
T Consensus 328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 98863 1111 13478889999999999999999999998865
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-12 Score=107.65 Aligned_cols=169 Identities=15% Similarity=0.069 Sum_probs=141.2
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 411 PSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTII 490 (647)
Q Consensus 411 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 490 (647)
.+...|..+...|...|++++|+..|++..+.. +-+...+..+..++...|++++|...+....... +.+...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 356778888889999999999999999888764 4467788888888999999999999999888764 55677777888
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
..+...++++.|...+.+..... +.+...+..++.+|...|++++|++.|+++.+.+ +.+..+|..++.++...|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 88889999999999999988732 3358888899999999999999999999999863 456778999999999999999
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|+..|+++++..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999998865
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.49 E-value=3.2e-12 Score=123.77 Aligned_cols=231 Identities=7% Similarity=-0.009 Sum_probs=167.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CC----CCCHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLH----GLEP-SAVTYTTFMNAYCEEGNIQRLLALLQEMETK--AI----GPTHVTYT 452 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~----~~~~~~~~ 452 (647)
....+...|++++|...+++.... +-.+ ....+..+...|...|+++.|...+++..+. .. .....++.
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 445666788888888888877653 1111 2456777888888888888888888876642 11 11234677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHH
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYN 522 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~ 522 (647)
.+...|...|++++|...+++..+... .++ ..++..+..+|...|++++|...+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 788888899999999999988876311 111 246788889999999999999999998871 2223 477888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEH----NISLTKVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.++.+|...|++++|...++++.+. +-+.....+..+...+...|+ +++|+.++++...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~-------------- 334 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKML-------------- 334 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcC--------------
Confidence 9999999999999999999998863 111112245667888888898 7777777766511
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.....+..++..|...|++++|.+.++++++
T Consensus 335 --------~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 --------YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp --------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 123356788899999999999999999999875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-12 Score=127.59 Aligned_cols=213 Identities=7% Similarity=-0.053 Sum_probs=175.1
Q ss_pred HHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 006396 359 IGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKV-ADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQ 437 (647)
Q Consensus 359 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 437 (647)
++.+...++...... +.+...+..+...+...|++ ++|...|++..+.. +.+...+..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455666666655442 23667777888888888898 99999998887753 4457888889999999999999999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 006396 438 EMETKAIGPTHVTYTVVIKGLCKQ---------WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--------KDLR 500 (647)
Q Consensus 438 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~ 500 (647)
...+. .|+...+..+...+... |++++|+..++++.+.. +.+...|..+..+|... |+++
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 98876 46778888888888888 99999999999999874 56788889999999888 9999
Q ss_pred HHHHHHHHHHhCCCCC----CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEP----TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+|...|+++++. .| +...|..++.+|...|++++|...|+++.+.. +.+...+..+..++...|++++|+..+
T Consensus 239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~ 315 (474)
T 4abn_A 239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK 315 (474)
T ss_dssp HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999983 45 68899999999999999999999999999853 445668889999999999999998766
Q ss_pred HHH
Q 006396 577 CQM 579 (647)
Q Consensus 577 ~~~ 579 (647)
.++
T Consensus 316 ~~~ 318 (474)
T 4abn_A 316 GKT 318 (474)
T ss_dssp TTC
T ss_pred ccc
Confidence 544
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2.8e-12 Score=131.97 Aligned_cols=165 Identities=12% Similarity=0.066 Sum_probs=138.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILI 525 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~ 525 (647)
+...++.+...+.+.|++++|++.|++.++.. +-+..++..+..+|.+.|++++|+..|+++++ +.| +...|..++
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nLg 84 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMG 84 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHH
Confidence 34578888888888899999999888888864 45677888888889999999999999998888 455 478888899
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
.+|...|++++|++.|+++++.+ +.+..++..++.++...|++++|+..|+++++.. |
T Consensus 85 ~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~---------------------P 142 (723)
T 4gyw_A 85 NTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK---------------------P 142 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------S
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------C
Confidence 99999999999999999988853 3456688889999999999999999999998887 7
Q ss_pred CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 606 PDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 606 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+..++..++.+|...|++++|.+.++++++
T Consensus 143 ~~~~a~~~L~~~l~~~g~~~~A~~~~~kal~ 173 (723)
T 4gyw_A 143 DFPDAYCNLAHCLQIVCDWTDYDERMKKLVS 173 (723)
T ss_dssp CCHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred CChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence 7788999999999999999999888888765
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.7e-12 Score=123.52 Aligned_cols=239 Identities=14% Similarity=0.061 Sum_probs=153.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HH
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEK----RI-SPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGL-EPS----AV 414 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~ 414 (647)
.+..+...+...|++++|...+++..+. +. +....++..+...+...|++++|...+++...... .++ ..
T Consensus 45 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 124 (338)
T 3ro2_A 45 IYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 124 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHH
Confidence 3444555555555555555555554332 00 11123445555566666666666666655443100 011 23
Q ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 415 TYTTFMNAYCEEGN--------------------IQRLLALLQEMETK----AI-GPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 415 ~~~~l~~~~~~~~~--------------------~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
++..+...|...|+ +++|...++..... +. ......+..+...+...|++++|..
T Consensus 125 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 204 (338)
T 3ro2_A 125 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVI 204 (338)
T ss_dssp HHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 55566666667777 77777777665431 11 1123456777788888899999999
Q ss_pred HHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+++..+... .++ ..++..+...+...|++++|...+++.... +..+ ...++..++.+|...|++++|..
T Consensus 205 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 284 (338)
T 3ro2_A 205 AHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAID 284 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9888775310 111 236778888899999999999999988752 1111 15677888999999999999999
Q ss_pred HHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 540 LLVSLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 540 ~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++++.+. +.++ ...++..++.++...|++++|...++++++..
T Consensus 285 ~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 285 YHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 99998753 1111 13377889999999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.7e-12 Score=109.17 Aligned_cols=168 Identities=15% Similarity=0.070 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL 528 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (647)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..++..+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345566667777788888888877776543 4456677777888888888888888888887732 33577788888888
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
...|++++|.+.++++.+.. +.+...+..++.++...|++++|...++++++.. |.+.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---------------------~~~~ 144 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR---------------------PNEG 144 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCH
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC---------------------ccch
Confidence 88888888888888888753 4566778888888888888888888888888876 6678
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.++..++.++...|++++|.+.++++.+..+.
T Consensus 145 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 176 (186)
T 3as5_A 145 KVHRAIAFSYEQMGRHEEALPHFKKANELDEG 176 (186)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 88888888888889999998888888775543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.1e-12 Score=121.82 Aligned_cols=231 Identities=10% Similarity=-0.014 Sum_probs=174.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CccchHHHHHHHHhcCCHHHHHHHHHHHHHCC--C----CCCHHHHH
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEK----RISP-SIVTFNSLIYGFCKNGKVADARRLLDTIKLHG--L----EPSAVTYT 417 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~----~~~~~~~~ 417 (647)
....+...|++++|...+++..+. +..+ ...++..+...+...|+++.|...+.+..... . +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 556677889999999999988764 1111 23567778888999999999999998876521 1 11245678
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAI-GPT----HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GV-TPDQITYN 487 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~ 487 (647)
.+...|...|++++|...|+...+... .++ ..++..+..+|...|++++|...+++..+. +. +....++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 888999999999999999988764310 111 246788889999999999999999998872 22 33456788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCC---CCC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC-HHHHHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHN---LEP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT-KVAYTTI 559 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 559 (647)
.+..+|...|++++|...+++..+.. -.| ....+..+...|...|+ +++|..++++. +..|+ ...+..+
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 345 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence 89999999999999999999988621 012 23346778889999999 77777777765 23333 3477889
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..|...|++++|..+++++++.
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~~ 368 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQV 368 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999999864
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=122.29 Aligned_cols=240 Identities=12% Similarity=0.066 Sum_probs=148.7
Q ss_pred ccchHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC
Q 006396 378 IVTFNSLIYGFCKNGKVADARRLLDTIKLH-------GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AI 444 (647)
Q Consensus 378 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 444 (647)
..++..+...+...|++++|..+++.+... ..+.....+..+...|...|++++|...++..... +-
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 345666777777888888888888777652 12334556677777777888888888888776653 11
Q ss_pred -CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----
Q 006396 445 -GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI------GV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH---- 512 (647)
Q Consensus 445 -~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---- 512 (647)
+.....+..+...+...|++++|...++++.+. +. +.....+..+...+...|++++|..+++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 223445667777777778888888877777653 11 122345666777777778888888877777652
Q ss_pred --CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCCH-------HHHHHHHHHHHhcCCHHHHHHH
Q 006396 513 --NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH-------NISLTK-------VAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 513 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+..| ...++..++.+|...|++++|...++++.+. ...+.. ..+......+...+.+.+|...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1123 2456677777777778888887777777752 111111 1222223333444555555556
Q ss_pred HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC
Q 006396 576 FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 638 (647)
++.+.... +....++..++.+|.+.|++++|.+.++++++..
T Consensus 267 ~~~~~~~~---------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 267 YKACKVDS---------------------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp -------C---------------------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HhhcCCCC---------------------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 66555443 4557889999999999999999999999998753
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.44 E-value=1e-11 Score=110.38 Aligned_cols=168 Identities=8% Similarity=-0.041 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDG 527 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~ 527 (647)
..+......+...|++++|+..|++.++...+++...+..+..++...|++++|...+++.++ ..| +...+..++.+
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~ 85 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSAA 85 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHHH
Confidence 444444444555555555555555555443214444444455555555555555555555554 223 24445555555
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTK-------VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
|...|++++|...++++.+.. +.+. .+|..++..+...|++++|+..++++++..
T Consensus 86 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~----------------- 147 (228)
T 4i17_A 86 YRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT----------------- 147 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-----------------
T ss_pred HHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-----------------
Confidence 555555555555555555431 2222 234445555555555555555555555543
Q ss_pred hCCCCC--CHHHHHHHHHHHHcCCC---------------------------HHHHHHHHHHHHhCCCC
Q 006396 601 SNGFPP--DQEICEVMLIAFHQGGD---------------------------LGSVFELAAVMIKSGLL 640 (647)
Q Consensus 601 ~~~~~~--~~~~~~~l~~~~~~~g~---------------------------~~~A~~~~~~~~~~~~~ 640 (647)
|. +..++..++.+|...|+ +++|+..++++++.+|.
T Consensus 148 ----p~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~ 212 (228)
T 4i17_A 148 ----SKKWKTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPN 212 (228)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ----CCcccHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 33 33444444444444444 49999999999987653
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2.6e-12 Score=120.60 Aligned_cols=240 Identities=14% Similarity=0.080 Sum_probs=160.3
Q ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC------C
Q 006396 342 DVVLYNIMIDGYVKLGNIGEAVQLYRQLIEK-------RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH------G 408 (647)
Q Consensus 342 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~ 408 (647)
...++..+...+...|++++|..+++++.+. ..+....++..+...+...|++++|...+++.... +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556677777788888888888888777663 22224456677777888888888888888777653 1
Q ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006396 409 -LEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI--- 477 (647)
Q Consensus 409 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--- 477 (647)
.+.....+..+...|...|++++|...++...+. +..| ....+..+...+...|++++|...++++.+.
T Consensus 106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~ 185 (311)
T 3nf1_A 106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQT 185 (311)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 1223566777888888889999888888887653 2122 3446777888888999999999999888764
Q ss_pred ---CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCCC-------HHHHHHHHHHHhhcCChhhHHH
Q 006396 478 ---GVTP-DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH-------NLEPT-------SATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 478 ---~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
+..| ...++..+..+|...|++++|..+++++.+. ...+. ...+..+...+...+.+.+|..
T Consensus 186 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 265 (311)
T 3nf1_A 186 KLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGG 265 (311)
T ss_dssp TSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-
T ss_pred HhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence 1122 3456788888999999999999999988752 11111 2223333444555677888888
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 540 LLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 540 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.+....... +....++..++.+|...|++++|..+++++++.
T Consensus 266 ~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 266 WYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp --------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 888887632 334568899999999999999999999999874
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.5e-10 Score=110.12 Aligned_cols=270 Identities=14% Similarity=0.039 Sum_probs=135.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCCcc----chHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHH
Q 006396 351 DGYVKLGNIGEAVQLYRQLIEKRISPSIV----TFNSLIYGFCKNGKVADARRLLDTIKLHGL-EPS----AVTYTTFMN 421 (647)
Q Consensus 351 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~ 421 (647)
..+...|+++.|...+++........+.. ++..+...+...|++++|...+++...... ..+ ...+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666655543211111 233444555556666666666655443100 011 122344555
Q ss_pred HHHHcCCHHHHHHHHHHHHhC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 006396 422 AYCEEGNIQRLLALLQEMETK----AIG--P-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTP----DQITYNTII 490 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~~l~ 490 (647)
.+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ....+..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 566666666666666655432 111 2 12334445556666667777766666665532111 123455556
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-C-HHHHH----HHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEP-T-SATYN----ILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTIIK 561 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~ 561 (647)
..+...|++++|...+++.......+ . ..... ..+..+...|++++|...+++..+....+. ...+..++.
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 66666677777776666665410011 1 11111 222335566777777776666654221111 123455566
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
++...|++++|...++++.... ...+.+++ ...+..++.++...|+.++|.+.++++..
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENA----------------RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHH----------------HhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666677777777766665432 00011112 23555566666666777777666666543
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.3e-11 Score=105.69 Aligned_cols=209 Identities=13% Similarity=-0.026 Sum_probs=152.2
Q ss_pred CccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 377 SIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK 456 (647)
Q Consensus 377 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 456 (647)
++..+......+...|++++|...|+.......+++...+..+..++...|++++|+..|+...+.. +.+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 5567777888888889999999999888876533677777778888888999999999998888763 334567788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHH
Q 006396 457 GLCKQWKLQEAVQLLEDMYVIGVTPDQ-------ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT---SATYNILID 526 (647)
Q Consensus 457 ~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~ 526 (647)
++...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++++ ..|+ ...+..++.
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHHHHH
Confidence 8888899999999998888763 4444 4577777788888899999999988887 3454 567777777
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP 606 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 606 (647)
+|...| ...++++...+ ..+...+.... ....+.+++|+..++++++.. |.
T Consensus 162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~---------------------p~ 212 (228)
T 4i17_A 162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS---------------------PN 212 (228)
T ss_dssp HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC---------------------TT
T ss_pred HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC---------------------CC
Confidence 776544 34455555432 23333443332 344567899999999999987 66
Q ss_pred CHHHHHHHHHHH
Q 006396 607 DQEICEVMLIAF 618 (647)
Q Consensus 607 ~~~~~~~l~~~~ 618 (647)
+..+...+....
T Consensus 213 ~~~~~~~l~~i~ 224 (228)
T 4i17_A 213 RTEIKQMQDQVK 224 (228)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 677766665543
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.38 E-value=4.4e-10 Score=108.32 Aligned_cols=237 Identities=10% Similarity=0.015 Sum_probs=147.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-C----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CH
Q 006396 346 YNIMIDGYVKLGNIGEAVQLYRQLIEKRISP-S----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GLE--P-SA 413 (647)
Q Consensus 346 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~--~-~~ 413 (647)
+..+...+...|+++.|...+++........ + ..++..+...+...|++++|...+++.... +.. | ..
T Consensus 56 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 135 (373)
T 1hz4_A 56 TSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHE 135 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHH
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHH
Confidence 3444555666667776666666655421110 1 112344556666777777777777765541 211 2 23
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH-
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIG----PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPD-QITYN- 487 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~- 487 (647)
..+..+...+...|++++|...+++....... .....+..+...+...|++++|...+++.......++ ...+.
T Consensus 136 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~ 215 (373)
T 1hz4_A 136 FLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWIS 215 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHH
Confidence 44555667777788888888888776543211 1234566777778888888888888888765321111 11111
Q ss_pred ----HHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCCH-HH
Q 006396 488 ----TIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLTK-VA 555 (647)
Q Consensus 488 ----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~-~~ 555 (647)
..+..+...|++++|...+++.......+ ....+..+..++...|++++|...++++.+. |.+++. .+
T Consensus 216 ~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~ 295 (373)
T 1hz4_A 216 NANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 295 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHH
Confidence 23344668889999988888877632111 1335667788888889999999988887642 211222 25
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..+..++...|++++|...+++++..
T Consensus 296 ~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 296 LLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 666778888899999999999988764
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.3e-10 Score=112.09 Aligned_cols=232 Identities=10% Similarity=0.019 Sum_probs=172.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-C-CCHHHH
Q 006396 348 IMIDGYVKLGNIGEAVQLYRQLIEKRIS-P----SIVTFNSLIYGFCKNGKVADARRLLDTIKLH----GL-E-PSAVTY 416 (647)
Q Consensus 348 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~-~~~~~~ 416 (647)
.....+...|++++|...+++..+.... + ...++..+..+|...|+++.|...+.+.... +. . ....++
T Consensus 106 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 185 (378)
T 3q15_A 106 FRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSL 185 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHH
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHH
Confidence 3455677889999999999988764211 1 2346677888889999999999998887652 10 1 124567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCHHHHH
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVI----GVTPDQITYN 487 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~ 487 (647)
+.+...|...|++++|...|+...+. +..+ ...++..+..++...|++++|...+++..+. +.+....++.
T Consensus 186 ~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 265 (378)
T 3q15_A 186 FVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLF 265 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHH
Confidence 78888999999999999999887652 1111 2346778888899999999999999998871 2233467788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhC-CC--CC-CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC-HHHHHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLH-NL--EP-TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT-KVAYTTI 559 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l 559 (647)
.+..++.+.|++++|..++++..+. .- .| ....+..+...|...|+ +++|...+++. +..|+ ...+..+
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l 342 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHH
Confidence 8999999999999999999999872 11 22 24556777778888888 77777777662 22333 3467789
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
+..|...|++++|...++++++.
T Consensus 343 a~~y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998764
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-11 Score=126.66 Aligned_cols=168 Identities=13% Similarity=-0.024 Sum_probs=139.4
Q ss_pred CCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 60 PRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNIL 139 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 139 (647)
|.++.+++.++.++.++|++++|+..|+++++..+. +..++..++.+|.+.|++++|+..|+++++.. +.+..+|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 456778899999999999999999999999886543 57788899999999999999999999998874 5567788889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
..++...|++++|.+.|++..+.. +-+...|+.+..++...|++++|++.|++.++.... +...+..+...+...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccH
Confidence 999999999999999999888763 446788888899999999999999999988876322 466788888888889998
Q ss_pred HHHHHHHHHHHh
Q 006396 220 EEGLKLREVMLS 231 (647)
Q Consensus 220 ~~a~~~~~~~~~ 231 (647)
++|.+.++++.+
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888877755
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-10 Score=112.59 Aligned_cols=230 Identities=11% Similarity=0.001 Sum_probs=174.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CC-CC-CHHHHH
Q 006396 384 LIYGFCKNGKVADARRLLDTIKLHGL-EP----SAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AI-GP-THVTYT 452 (647)
Q Consensus 384 l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~-~~~~~~ 452 (647)
....+...|++++|...+++...... .+ ....+..+...|...|+++.|...++...+. +. .+ ...++.
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 44566789999999999999876311 12 2456788889999999999999999887652 11 11 245678
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CCCCCCHHHHH
Q 006396 453 VVIKGLCKQWKLQEAVQLLEDMYVI----GVT-PDQITYNTIIRSFCKCKDLRKAFQLLNQMWL-----HNLEPTSATYN 522 (647)
Q Consensus 453 ~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~ 522 (647)
.+...|...|++++|...+++..+. +.+ ....++..+..+|...|++++|...+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 8889999999999999999988763 111 1234678889999999999999999999887 32 22377888
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCC---CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCcccchhhhhHH
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNI---SLT-KVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFEISIRDYTKSF 595 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~ 595 (647)
.++.+|.+.|++++|...+++..+... .+. ...+..+...+...|+ +++|+.++++. +
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~------------ 330 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---N------------ 330 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---T------------
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---C------------
Confidence 999999999999999999999987421 122 2355666667777888 77777777762 2
Q ss_pred HHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 596 FCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+.....+..++..|...|++++|.+.++++++
T Consensus 331 -------~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 331 -------LHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp -------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred -------ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0123356778999999999999999999999875
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-10 Score=99.62 Aligned_cols=167 Identities=13% Similarity=-0.007 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRS 492 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 492 (647)
...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~ 85 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 3456667777888889999998888877653 3467778888888888999999999999888764 5567788888888
Q ss_pred HHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 493 FCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 493 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+..++..++.++...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999988742 3467888889999999999999999999998863 45677888999999999999999
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
...++++++..
T Consensus 164 ~~~~~~~~~~~ 174 (186)
T 3as5_A 164 LPHFKKANELD 174 (186)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHcC
Confidence 99999988754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.31 E-value=3.4e-11 Score=111.12 Aligned_cols=234 Identities=11% Similarity=0.021 Sum_probs=140.0
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC------CC-CCCHHHHHHH
Q 006396 389 CKNGKVADARRLLDTIKLH-------GLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK------AI-GPTHVTYTVV 454 (647)
Q Consensus 389 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 454 (647)
...|++++|...+++..+. ..+.....+..+...|...|++++|...++...+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456666666666665441 11223556777777788888888888888776643 11 1224466777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC------CCCC-CHHH
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVI------G-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLH------NLEP-TSAT 520 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~p-~~~~ 520 (647)
...+...|++++|...++++.+. . .+....++..+...|...|++++|..+++++.+. +..| ...+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777888888888888777764 1 1223456667777777778888888877777652 1123 2556
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHc-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEH-------NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
+..++.+|...|++++|...++++.+. ...+. ...+..+.......+....+..+ ..+...-
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--------- 241 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPY-GEYGSWY--------- 241 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC---------------------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHH-HHHHHHH---------
Confidence 677777777778888888777777652 11122 22344444333333333332222 1111100
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
. ......+....++..++.+|...|++++|.++++++++.
T Consensus 242 ----~-~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 242 ----K-ACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred ----H-hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 0 000011233678889999999999999999999998864
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-10 Score=91.09 Aligned_cols=132 Identities=15% Similarity=0.191 Sum_probs=102.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|..+++++.+.+ +.+...+..++..+...|++++|...++++.+.+ +.+...+..++..+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566777777888888888888877632 2356777778888888888888888888887753 445667778888888
Q ss_pred hcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 565 AEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
..|++++|...++++.+.. |.+...+..++.++.+.|++++|.+.++++.+.++
T Consensus 81 ~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD---------------------PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhcCHHHHHHHHHHHHHhC---------------------CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 8888888888888888766 66677888888888888888888888888887654
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-10 Score=104.87 Aligned_cols=203 Identities=11% Similarity=-0.104 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHhCCCCcCHHHHHHHHHh--cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhh
Q 006396 13 HDAVFVIAKMKELDLKVSIQTYNSLLYN--LRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETA 90 (647)
Q Consensus 13 ~~A~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 90 (647)
.+|..+++++-+.- ++..-++ .++.. .+++++|...|+++ +..+...|++++|...|.++.
T Consensus 2 ~~a~~~~~~a~k~~-~~~~~~~-~~~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al 64 (292)
T 1qqe_A 2 SDPVELLKRAEKKG-VPSSGFM-KLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAA 64 (292)
T ss_dssp CCHHHHHHHHHHHS-SCCCTHH-HHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHh-CcCCCcc-hhcCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHH
Confidence 45677777777652 2222223 44432 22478888887776 346778889999988888876
Q ss_pred cC----CCCcC-HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---CC--CHHHHHHHHHHHHhc-CCHHHHHHHHHHH
Q 006396 91 GK----EFGPS-VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL---HP--DAFSYNILIHGLCIA-GSMEEALEFTNDM 159 (647)
Q Consensus 91 ~~----~~~~~-~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~-~~~~~a~~~~~~~ 159 (647)
.. +.++. ..++..+..+|.+.|++++|+..|+++++... .+ ...++..+...|... |++++|...|++.
T Consensus 65 ~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 65 DYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 53 21111 45788888888888888888888888775310 11 133566666777765 7777777777776
Q ss_pred hhCCCCC-C----hhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHH
Q 006396 160 GRHGVEP-D----AITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV------TYTVLICGYCQIGNVEEGLKLREV 228 (647)
Q Consensus 160 ~~~~~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~ 228 (647)
.+..... + ..++..+...+...|++++|+..|++........... .+..+..++...|++++|...++.
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 224 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQE 224 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHG
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5531110 0 2345556666666666666666666666543221111 244455555566666666666666
Q ss_pred HHhC
Q 006396 229 MLSQ 232 (647)
Q Consensus 229 ~~~~ 232 (647)
..+.
T Consensus 225 al~l 228 (292)
T 1qqe_A 225 GQSE 228 (292)
T ss_dssp GGCC
T ss_pred HHhh
Confidence 5543
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.8e-10 Score=101.29 Aligned_cols=64 Identities=8% Similarity=-0.076 Sum_probs=54.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC---CHHHHHHHHHHHHcC----------C
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP---DQEICEVMLIAFHQG----------G 622 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g 622 (647)
+..++.++...|++++|+..|+++++.. |. ...++..++.+|... |
T Consensus 151 ~~~la~~~~~~g~~~~A~~~~~~~l~~~---------------------p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~ 209 (261)
T 3qky_A 151 QYEAARLYERRELYEAAAVTYEAVFDAY---------------------PDTPWADDALVGAMRAYIAYAEQSVRARQPE 209 (261)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHC---------------------CCCchHHHHHHHHHHHHHHhcccchhhcccc
Confidence 3677899999999999999999999875 33 467899999999876 8
Q ss_pred CHHHHHHHHHHHHhCCCC
Q 006396 623 DLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 623 ~~~~A~~~~~~~~~~~~~ 640 (647)
++++|...++++++..|.
T Consensus 210 ~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 210 RYRRAVELYERLLQIFPD 227 (261)
T ss_dssp HHHHHHHHHHHHHHHCTT
T ss_pred hHHHHHHHHHHHHHHCCC
Confidence 999999999999987654
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.23 E-value=2.8e-08 Score=98.20 Aligned_cols=104 Identities=13% Similarity=0.050 Sum_probs=50.6
Q ss_pred hcC-ChhhHHHHHHHHHhCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCC-hhHHHHH
Q 006396 8 RTG-MVHDAVFVIAKMKELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSR-LQDAILF 85 (647)
Q Consensus 8 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~ 85 (647)
++| ++..|+.+|++++..- |. ++++.+..+|++++.. . |+...|...+....+.++ .+....+
T Consensus 6 ~~~~~i~~aR~vyer~l~~~--P~-----------~~~e~~~~iferal~~-~-ps~~LW~~Y~~f~~~~~~~~~~i~~~ 70 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRLY--MS-----------KDYRSLESLFGRCLKK-S-YNLDLWMLYIEYVRKVSQKKFKLYEV 70 (493)
T ss_dssp ------CCHHHHHHHHHHHH--HT-----------TCHHHHHHHHHHHSTT-C-CCHHHHHHHHHHHHHHC----CTHHH
T ss_pred HcCcchHHHHHHHHHHHHHC--CC-----------CCHHHHHHHHHHHhcc-C-CCHHHHHHHHHHHHHhCchHHHHHHH
Confidence 445 3666666666666541 22 5666666666666552 2 355566665555555442 3444555
Q ss_pred HHHhhcC-CCC-cCHHhHHHHHHHHH----hcCChhhHHHHHHHHHh
Q 006396 86 LQETAGK-EFG-PSVVSLNAIMSRYC----KLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 86 ~~~~~~~-~~~-~~~~~~~~~~~~~~----~~g~~~~a~~~~~~~~~ 126 (647)
|+.++.. |.. .+..+|...+..+. ..|+.+.+..+|+++++
T Consensus 71 fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 71 YEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5555432 211 23445555555433 23445556666666655
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.23 E-value=3.6e-09 Score=94.97 Aligned_cols=253 Identities=7% Similarity=-0.024 Sum_probs=164.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 006396 353 YVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRL 432 (647)
Q Consensus 353 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 432 (647)
..-.|++..++.-...+ ...........+.+++...|++... ..-.|....+..+...+ ..+ +
T Consensus 23 ~fy~G~yq~~i~e~~~~---~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a 85 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKF---SKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----N 85 (310)
T ss_dssp HHTTTCHHHHTHHHHTS---SCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----C
T ss_pred HHHhhHHHHHHHHHHhc---CccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----H
Confidence 34467777666632221 1111122223344666666665531 11234443444443333 222 6
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 433 LALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 433 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+..|++....+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++++.+
T Consensus 86 ~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~ 164 (310)
T 3mv2_B 86 IEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN 164 (310)
T ss_dssp CHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 77777776654 45666667888888999999999999998876542 24567778888999999999999999999987
Q ss_pred CCCCC-----CHHHHHHHHHH--HhhcC--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 512 HNLEP-----TSATYNILIDG--LCVNG--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 512 ~~~~p-----~~~~~~~l~~~--~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..| +..+...|+.+ ....| ++++|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.+.
T Consensus 165 --~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~ 240 (310)
T 3mv2_B 165 --AIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSD 240 (310)
T ss_dssp --HSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSH
T ss_pred --cCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 466 34555555555 33344 899999999998764 455333344444899999999999999977653
Q ss_pred CCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 583 GFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
....... ...-|.++.+...++......|+ +|.+++.++.+..|.
T Consensus 241 ~p~~~~k-----------~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 241 YYSVEQK-----------ENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHTTTC-----------HHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred ccccccc-----------ccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 1000000 00005678888788877777887 899999999997643
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=5.5e-11 Score=97.08 Aligned_cols=145 Identities=8% Similarity=-0.015 Sum_probs=115.5
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcC
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNG 532 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g 532 (647)
|...+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|+++++ +.| ++..|..++.+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYIN--VQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcC
Confidence 3445566788888888888876531 22344566788899999999999999999998 455 5889999999999999
Q ss_pred ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 533 DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF-FCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 533 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
++++|...|+++++.+ +.+..++..++.++...|++++|... ++++++.. |.++.+|
T Consensus 80 ~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~---------------------P~~~~~~ 137 (150)
T 4ga2_A 80 NTDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF---------------------PGSPAVY 137 (150)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS---------------------TTCHHHH
T ss_pred chHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC---------------------cCCHHHH
Confidence 9999999999999853 44567899999999999999876655 58999887 7788999
Q ss_pred HHHHHHHHcCCC
Q 006396 612 EVMLIAFHQGGD 623 (647)
Q Consensus 612 ~~l~~~~~~~g~ 623 (647)
......+...|+
T Consensus 138 ~l~~~ll~~~G~ 149 (150)
T 4ga2_A 138 KLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHTCCC
T ss_pred HHHHHHHHHhCc
Confidence 988888888886
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.23 E-value=1.7e-10 Score=106.34 Aligned_cols=229 Identities=13% Similarity=0.034 Sum_probs=160.5
Q ss_pred HhcCCHHHHHHHHHHHHHC-------CCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHC------CC-CCCHHHHHHH
Q 006396 354 VKLGNIGEAVQLYRQLIEK-------RISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLH------GL-EPSAVTYTTF 419 (647)
Q Consensus 354 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 419 (647)
...|+++.|+..+++.++. ..+....++..+...+...|++++|...++.+... +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3467777777777666552 22334567888899999999999999999988753 21 2345678889
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc------C-CCCCHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETK------A-IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVI------G-VTPDQIT 485 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~ 485 (647)
...|...|++++|...+++.... . .+....++..+...+...|++++|...++++.+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 1 1223567888899999999999999999999875 1 1223467
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhC-------CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH--Hc---CCCCC
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLH-------NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQ--EH---NISLT 552 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~---~~~~~ 552 (647)
+..+..+|...|++++|..+++++.+. ...+ ....+..+...+...+....+..+..... +. ..+..
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV 251 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence 888999999999999999999998862 1122 23444445444444444333333221111 11 11122
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..++..++.++...|++++|..+++++++.
T Consensus 252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 447888999999999999999999998764
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-10 Score=104.05 Aligned_cols=213 Identities=11% Similarity=-0.009 Sum_probs=156.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AIGPT-HVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~a 467 (647)
++++|...|... ...|...|++++|...|+..... +-++. ..+|+.+..+|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 488888888776 34577899999999999877653 21122 45788899999999999999
Q ss_pred HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHhCCCCC---C----HHHHHHHHHHHhhcCCh
Q 006396 468 VQLLEDMYVIGVT-PD----QITYNTIIRSFCKC-KDLRKAFQLLNQMWLHNLEP---T----SATYNILIDGLCVNGDL 534 (647)
Q Consensus 468 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p---~----~~~~~~l~~~~~~~g~~ 534 (647)
+..+++.++.... .+ ..++..+..+|... |++++|+..|++.++. .| + ..++..++..+...|++
T Consensus 97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~--~~~~~~~~~~~~~~~~lg~~~~~~g~~ 174 (292)
T 1qqe_A 97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEW--YAQDQSVALSNKCFIKCADLKALDGQY 174 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHH--HHhCCChHHHHHHHHHHHHHHHHhCCH
Confidence 9999988763211 11 35788899999996 9999999999999872 22 1 45788999999999999
Q ss_pred hhHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 535 KNADCLLVSLQEHNISLTK------VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
++|...++++.+....... ..+..++.++...|++++|+..++++++.. |+.. .....
T Consensus 175 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~--------------~~~~~ 238 (292)
T 1qqe_A 175 IEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED--PNFA--------------DSRES 238 (292)
T ss_dssp HHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------------------------H
T ss_pred HHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCC--------------CcHHH
Confidence 9999999999985322211 156788889999999999999999998754 1100 01112
Q ss_pred HHHHHHHHHHH--cCCCHHHHHHHHHHHHhCC
Q 006396 609 EICEVMLIAFH--QGGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 609 ~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~ 638 (647)
..+..++.++. ..+++++|+..++++...+
T Consensus 239 ~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~ 270 (292)
T 1qqe_A 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD 270 (292)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhccCCccH
Confidence 34555666665 4577889988887766543
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.20 E-value=2.2e-09 Score=94.69 Aligned_cols=190 Identities=11% Similarity=0.018 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---ITYN 487 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~ 487 (647)
...+..+...+...|++++|...|+.+.+... .| ....+..+..++.+.|++++|+..++++++.. +.+. ..+.
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~ 82 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHH
Confidence 34455566677778888888888887776421 11 13456667777778888888888888877753 2222 1344
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-------------
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV------------- 554 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------------- 554 (647)
.+..++...+.. .+ ..|..+...+...|++++|...|+++++.. |-+..
T Consensus 83 ~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~~~~ 144 (225)
T 2yhc_A 83 MRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVFLKD 144 (225)
T ss_dssp HHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHHHHH
Confidence 444444431100 00 000111111222344444444444444421 11111
Q ss_pred ----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC---HHHHHHHHHHHHcCCCHHHH
Q 006396 555 ----AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD---QEICEVMLIAFHQGGDLGSV 627 (647)
Q Consensus 555 ----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A 627 (647)
....++..+...|++++|+..|+++++.. |.+ ..++..++.++.+.|++++|
T Consensus 145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~---------------------p~~~~~~~a~~~l~~~~~~~g~~~~A 203 (225)
T 2yhc_A 145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY---------------------PDTQATRDALPLMENAYRQMQMNAQA 203 (225)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC---------------------cCCCccHHHHHHHHHHHHHcCCcHHH
Confidence 12456778899999999999999999876 444 36899999999999999999
Q ss_pred HHHHHHHHhCCCCCC
Q 006396 628 FELAAVMIKSGLLPD 642 (647)
Q Consensus 628 ~~~~~~~~~~~~~~~ 642 (647)
++.++.+...++...
T Consensus 204 ~~~~~~l~~~~~~~~ 218 (225)
T 2yhc_A 204 EKVAKIIAANSSNTL 218 (225)
T ss_dssp HHHHHHHHHCCSCCC
T ss_pred HHHHHHHHhhCCCch
Confidence 999999998776543
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.18 E-value=4.8e-10 Score=116.36 Aligned_cols=173 Identities=12% Similarity=-0.019 Sum_probs=140.8
Q ss_pred HHcCCHHHHHHHHHHHH--------hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 424 CEEGNIQRLLALLQEME--------TKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK 495 (647)
Q Consensus 424 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 495 (647)
...|++++|++.++... +.. +.+...+..+...+...|++++|+..++++.+.. +.+...+..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 67788999999998887 332 3455678888888899999999999999988864 5677888888999999
Q ss_pred cCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMT 574 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 574 (647)
.|++++|...|+++++ +.| +...+..++.+|...|++++ ...|+++++.+ +.+...|..++.++...|++++|+.
T Consensus 480 ~g~~~~A~~~~~~al~--l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLD--TFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHH--HSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999988 445 57888899999999999999 99999999853 4466788999999999999999999
Q ss_pred HHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 575 FFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 575 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
.|+++++.+ |.+..++..++.++...|+
T Consensus 556 ~~~~al~l~---------------------P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTS---------------------RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTS---------------------TTHHHHHHHHHHHTC----
T ss_pred HHHhhcccC---------------------cccHHHHHHHHHHHHccCC
Confidence 999998876 5567888888888877665
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.17 E-value=4.7e-10 Score=97.58 Aligned_cols=164 Identities=10% Similarity=0.005 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC-HHHHHH----------------HHHHHHhcCCHHHHHHHHHHHH
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT-HVTYTV----------------VIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~----------------l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
...+......+...|++++|...|+...+. .|+ ...|.. +..++...|++++|+..+++.+
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 81 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELL 81 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444556677788888888888887765 333 334444 5555666666666666666666
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC--hhhHHHHHHHHHHcCCCCC
Q 006396 476 VIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGD--LKNADCLLVSLQEHNISLT 552 (647)
Q Consensus 476 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~ 552 (647)
+.. +.+...+..+..++...|++++|...|+++++ +.| +...+..++.+|...|+ .+.+...++++.. ..|.
T Consensus 82 ~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 156 (208)
T 3urz_A 82 QKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ--LEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKM 156 (208)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHH
T ss_pred HHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCch
Confidence 543 44555666666666666666666666666665 233 35556666655544432 2333444444331 1222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
...+.....++...|++++|+..|+++++..
T Consensus 157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~ 187 (208)
T 3urz_A 157 QYARYRDGLSKLFTTRYEKARNSLQKVILRF 187 (208)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 2233444555555666666666666666543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.6e-09 Score=90.95 Aligned_cols=175 Identities=15% Similarity=0.019 Sum_probs=99.2
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHHH
Q 006396 432 LLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK----DLRKAFQLLN 507 (647)
Q Consensus 432 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~~ 507 (647)
|+..|+...+.| +...+..+...|...+++++|...|++..+.| +...+..+...|.. + ++++|..+|+
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~ 77 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAE 77 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHH
Confidence 444555555443 44555555555555666666666666665543 34455555555555 4 6666666666
Q ss_pred HHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 006396 508 QMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNIS-LTKVAYTTIIKAHCA----EGDVHKAMTFFCQ 578 (647)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 578 (647)
+..+.+ ++..+..|...|.. .+++++|..+|++..+.|.. .+...+..+...|.. .+++++|+.+|++
T Consensus 78 ~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 78 KAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 665533 45555566666655 56666666666666654311 014556666666665 5666666666666
Q ss_pred HHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-C-----CHHHHHHHHHHHHhCC
Q 006396 579 MVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-G-----DLGSVFELAAVMIKSG 638 (647)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 638 (647)
+.+.+ .+...+..++..|... | +.++|..+++++.+.|
T Consensus 155 A~~~~----------------------~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 155 SSSLS----------------------RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHTS----------------------CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHcC----------------------CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 66542 2334556666666543 2 6666666666666554
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-09 Score=98.38 Aligned_cols=167 Identities=10% Similarity=-0.002 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-C-CCHHHHHH
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPT---HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV-T-PDQITYNT 488 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~-~~~~~~~~ 488 (647)
..+......+...|++++|...|+.+.+.. +.+ ...+..+..++...|++++|+..|+++++... . .....+..
T Consensus 16 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 16 QEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 333444444444444444444444444431 111 23344444444445555555555554444310 0 11223334
Q ss_pred HHHHHHh--------cCCHHHHHHHHHHHHhCCCCCC-HH-----------------HHHHHHHHHhhcCChhhHHHHHH
Q 006396 489 IIRSFCK--------CKDLRKAFQLLNQMWLHNLEPT-SA-----------------TYNILIDGLCVNGDLKNADCLLV 542 (647)
Q Consensus 489 l~~~~~~--------~~~~~~A~~~~~~~~~~~~~p~-~~-----------------~~~~l~~~~~~~g~~~~A~~~~~ 542 (647)
+..++.. .|++++|...|+++++. .|+ .. .+..++.+|...|++++|+..|+
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 172 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE 172 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 4444444 45555555555555441 121 11 13567889999999999999999
Q ss_pred HHHHcCCCC--CHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcC
Q 006396 543 SLQEHNISL--TKVAYTTIIKAHCAE----------GDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~~~~~--~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~ 583 (647)
++++..... ....+..++.++... |++++|+..++++++..
T Consensus 173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 999853111 234788888888876 89999999999999876
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.3e-09 Score=100.09 Aligned_cols=165 Identities=9% Similarity=-0.003 Sum_probs=124.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYN-ILI 525 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~ 525 (647)
+...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.. ..|+..... ...
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~--~~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPL--QDQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCG--GGCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCch--hhcchHHHHHHHH
Confidence 44455666677778888888888888887764 55667778888888888888888888888776 345543332 333
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
..+...++.++|...++++.+.. +.+...+..++.++...|++++|+..++++++.. |
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~---------------------p 250 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD---------------------L 250 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------T
T ss_pred HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc---------------------c
Confidence 34666777888888888888753 4566788888888888899999998888888876 4
Q ss_pred CC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 606 PD--QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 606 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+ ..++..++.++...|+.++|...+++.+.
T Consensus 251 ~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 251 TAADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp TGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 44 67888888888888888888888887654
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-08 Score=90.10 Aligned_cols=180 Identities=12% Similarity=0.029 Sum_probs=121.6
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 397 ARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAI-GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMY 475 (647)
Q Consensus 397 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 475 (647)
+...+++....+ .++...+..+..++...|++++|++++......+- .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566677666554 45555566777888888888888888888766542 1355667777888888888888888888887
Q ss_pred HcCCCC-----CHHHHHHHHHH--HHhcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 476 VIGVTP-----DQITYNTIIRS--FCKCK--DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 476 ~~~~~~-----~~~~~~~l~~~--~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+. .| +..+...++.+ ....| ++.+|..+|+++.+. .|+...-..++.++.+.|++++|.+.++.+.+
T Consensus 164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 64 45 24555555555 33334 788888888888763 45433333344478888888888888886654
Q ss_pred c-----CC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 547 H-----NI----SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 547 ~-----~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. +. +.++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 2 00 3345566666666666776 7888888888766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.15 E-value=2.2e-09 Score=93.24 Aligned_cols=174 Identities=9% Similarity=-0.040 Sum_probs=133.5
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhCC
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTT----------------FMNAYCEEGNIQRLLALLQEMETKA 443 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~----------------l~~~~~~~~~~~~a~~~~~~~~~~~ 443 (647)
.+......+...|++++|...|+...... +.+...+.. +..+|...|++++|+..|+...+..
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 84 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN-IDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA 84 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 34445567788999999999999998753 334556666 8889999999999999999998874
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHhCCCCCCHHHH
Q 006396 444 IGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD--LRKAFQLLNQMWLHNLEPTSATY 521 (647)
Q Consensus 444 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~A~~~~~~~~~~~~~p~~~~~ 521 (647)
+.+...+..+..++...|++++|...|+++++.. |.+..++..+..+|...|+ .+.+...++.... ..|....+
T Consensus 85 -p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 85 -PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp -TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred -CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 4567889999999999999999999999999975 6677888889888876554 4556666666543 33334455
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
..+..++...|++++|...|+++++ +.|+......+.
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~ 197 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLD 197 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHH
Confidence 5667778889999999999999998 567765444443
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-07 Score=93.40 Aligned_cols=104 Identities=11% Similarity=-0.091 Sum_probs=57.8
Q ss_pred hcC-ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHH
Q 006396 75 QQS-RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGS-MEEA 152 (647)
Q Consensus 75 ~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 152 (647)
+.| +...|+.+|++++.. -|. |+++.+..+|++.+.. .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 445 367777777777653 122 7777888888777775 5677777777766655553 3445
Q ss_pred HHHHHHHhhC-CC-CCChhhHHHHHHHHHh----cCChhhHHHHHHHHHh
Q 006396 153 LEFTNDMGRH-GV-EPDAITYSILAKGFHL----LSQISGAWKVIQKLLI 196 (647)
Q Consensus 153 ~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~ 196 (647)
..+|+..... |. +.+...|...+..+.. .++.+.+.++|++.+.
T Consensus 68 ~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~ 117 (493)
T 2uy1_A 68 YEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQ 117 (493)
T ss_dssp HHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHh
Confidence 5666665542 32 2345555555554331 3445566666666665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-09 Score=110.70 Aligned_cols=154 Identities=10% Similarity=-0.041 Sum_probs=103.8
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 426 EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQL 505 (647)
Q Consensus 426 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 505 (647)
.|++++|...+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 467788888888776653 3356677778888888888888888888887753 45567777888888888888888888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE---GDVHKAMTFFCQMVEK 582 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 582 (647)
+++..+.. +.+...+..++.+|...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++++.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 88887732 2247778888888888888888888888888753 34566777888888888 8888888888888877
Q ss_pred C
Q 006396 583 G 583 (647)
Q Consensus 583 ~ 583 (647)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 6
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.13 E-value=5.9e-09 Score=83.44 Aligned_cols=131 Identities=14% Similarity=0.181 Sum_probs=97.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHh
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLC 529 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~ 529 (647)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|..+++++...+ +.+...+..++.++.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 35566667777778888888887777654 4456677777777778888888888888877632 335677777888888
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|...++++.+.. +.+..++..++.++...|++++|...+++++...
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888887753 4456677788888888888888888888887654
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.2e-10 Score=92.87 Aligned_cols=163 Identities=10% Similarity=-0.019 Sum_probs=112.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-Hh
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG-LC 529 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 529 (647)
+......+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++... .|++..+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHH
Confidence 3345556677788888888887776643 455667777788888888888888888877663 3344433332222 12
Q ss_pred hcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH
Q 006396 530 VNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE 609 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 609 (647)
..++..+|...++++.+.. +.+...+..++.++...|++++|+..++++++.. +-+.+..
T Consensus 86 ~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-------------------p~~~~~~ 145 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVN-------------------LGAQDGE 145 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-------------------TTTTTTH
T ss_pred hhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-------------------cccChHH
Confidence 2233445788888888753 3456788888888888888888888888888765 0012356
Q ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 610 ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 610 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+..++.++...|+.++|...+++.+.
T Consensus 146 a~~~l~~~~~~~g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 146 VKKTFMDILSALGQGNAIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 788888888888888888888887764
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2e-10 Score=92.88 Aligned_cols=104 Identities=8% Similarity=-0.062 Sum_probs=76.0
Q ss_pred CCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 514 LEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 514 ~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
+.| +...+..++..+...|++++|...|+++.+.+ |.+...|..++.++...|++++|+..|+++++..
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~--------- 100 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG--------- 100 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC---------
Confidence 344 35566777777777777777777777777753 4456677777777777778888887777777776
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|.++.+|..++.+|.+.|++++|++.++++++..+
T Consensus 101 ------------P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 101 ------------KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp ------------SSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred ------------CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 66677777777777777787778777777777554
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.9e-09 Score=84.61 Aligned_cols=97 Identities=12% Similarity=-0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+......|.+.|++++|+..|+++++.+ +.+...|..++.+|...|++++|+..++++++.+ +.+...|..++.++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 34444445555555555555555554421 1134445555555555555555555555555432 223344555555555
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|+..|+++++..
T Consensus 93 ~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HCCCHHHHHHHHHHHHHHC
Confidence 5555555555555555444
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=5.4e-10 Score=91.10 Aligned_cols=124 Identities=10% Similarity=-0.010 Sum_probs=57.7
Q ss_pred HHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 006396 70 IDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 70 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 149 (647)
+..+...|++++|+..++.+....+ .+...+..++..|.+.|++++|...|+++++.. +.++.+|..+..+|...|++
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~ 81 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENT 81 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCch
Confidence 3334444555555555555543211 122244445555555555555555555555443 33444555555555555555
Q ss_pred HHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHH-HHHHHh
Q 006396 150 EEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKV-IQKLLI 196 (647)
Q Consensus 150 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~-~~~~~~ 196 (647)
++|...|++..+.. +.+...|..+..++...|+.+++.+. +++..+
T Consensus 82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 55555555554432 22344455555555555554443332 344443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.08 E-value=5.2e-08 Score=84.77 Aligned_cols=176 Identities=13% Similarity=0.023 Sum_probs=141.6
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 006396 396 DARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQW----KLQEAVQLL 471 (647)
Q Consensus 396 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~a~~~~ 471 (647)
+|.+.|++..+. -++..+..+...|...+++++|+..|+...+.+ +...+..+...|.. + ++++|...|
T Consensus 4 eA~~~~~~aa~~---g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEA---GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHT---TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHC---CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 466777777765 367778888888888999999999999988865 56677777777777 6 899999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhCCCC-CCHHHHHHHHHHHhh----cCChhhHHHHHH
Q 006396 472 EDMYVIGVTPDQITYNTIIRSFCK----CKDLRKAFQLLNQMWLHNLE-PTSATYNILIDGLCV----NGDLKNADCLLV 542 (647)
Q Consensus 472 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~ 542 (647)
++..+.| +...+..+...|.. .+++++|..+|++..+.+.. .++..+..|..+|.. .+++++|..+|+
T Consensus 77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~ 153 (212)
T 3rjv_A 77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK 153 (212)
T ss_dssp HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence 9998754 66777788888877 88999999999999885421 127888889999988 789999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 006396 543 SLQEHNISLTKVAYTTIIKAHCAE-G-----DVHKAMTFFCQMVEKG 583 (647)
Q Consensus 543 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~ 583 (647)
+..+. +.+...+..+...|... | ++++|+.+|+++.+.|
T Consensus 154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 99985 34566788888888653 3 8999999999999887
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.5e-09 Score=91.55 Aligned_cols=163 Identities=12% Similarity=-0.044 Sum_probs=84.1
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH-
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG- 142 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~- 142 (647)
..+...+..+...|++++|+..|++++...+ .+...+..+...+.+.|++++|...++++.+.. |++..+..+...
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~ 83 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLE 83 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHH
Confidence 3455556666666666666666666655432 245566666666666666666666666665542 233322222111
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC-CcchHHHHHHHHHhcCChHH
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP-DIVTYTVLICGYCQIGNVEE 221 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 221 (647)
+...+...+|...+++..+.. |.+...+..+..++...|++++|...|+++.+..+.+ +...+..+...+...|+.++
T Consensus 84 ~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 84 LHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 111122223455555555431 2245555555555555666666666665555543221 13345555555555555555
Q ss_pred HHHHHHHHH
Q 006396 222 GLKLREVML 230 (647)
Q Consensus 222 a~~~~~~~~ 230 (647)
|...|+..+
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 555555443
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.08 E-value=9.4e-10 Score=114.22 Aligned_cols=173 Identities=10% Similarity=-0.098 Sum_probs=109.0
Q ss_pred HhcCChhHHHHHHHHhh--------cCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 74 CQQSRLQDAILFLQETA--------GKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 74 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
...|++++|+..|+++. ...+ .+...+..++..+.+.|++++|...|+++++.. +.+...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence 56677777777777766 3322 244566666777777777777777777777653 4456666667777777
Q ss_pred cCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHH
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKL 225 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 225 (647)
.|++++|.+.|++..+.. +.+...|..+..++...|++++ .+.|++..+.+.. +...+..+..++...|++++|.+.
T Consensus 480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~ 556 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT 556 (681)
T ss_dssp HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence 777777777777776652 3355666677777777777777 7777777665322 445666677777777777777777
Q ss_pred HHHHHhCCCCcCcccHHHHHHHHHhcC
Q 006396 226 REVMLSQGFKLNVIAYSVLLSSMCKSG 252 (647)
Q Consensus 226 ~~~~~~~~~~~~~~~~~~l~~~~~~~g 252 (647)
|++..+.+.. +...+..+..++...+
T Consensus 557 ~~~al~l~P~-~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 557 LDEVPPTSRH-FTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHTSCTTSTT-HHHHHHHHHHHTC---
T ss_pred HHhhcccCcc-cHHHHHHHHHHHHccC
Confidence 7776655322 3445555666655433
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.5e-08 Score=89.42 Aligned_cols=184 Identities=10% Similarity=-0.063 Sum_probs=99.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCH---HHHHHH
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDA---FSYNIL 139 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l 139 (647)
.+..++..+...|++++|+..|++++...+... ...+..++.++.+.|++++|...|+++++.. +.+. .++..+
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHHHHH
Confidence 344455555566666666666666554322211 2345555555666666666666666655542 1111 123333
Q ss_pred HHHHH------------------hcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCC
Q 006396 140 IHGLC------------------IAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDP 201 (647)
Q Consensus 140 ~~~~~------------------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 201 (647)
..++. ..|++++|...|+++.+.. |-+...+........ +...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~~----------~~~~~~------ 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLVF----------LKDRLA------ 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHHH----------HHHHHH------
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHHH----------HHHHHH------
Confidence 33332 3566777777777776652 223333322211100 000000
Q ss_pred CcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc--CcccHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 006396 202 DIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL--NVIAYSVLLSSMCKSGRIDEALGLLYEMEAVG 268 (647)
Q Consensus 202 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 268 (647)
.....+...+...|++++|...|+.+.+..... ....+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 --~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 --KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred --HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 011345667778888888888888887763221 12457778888888888888888888877763
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.9e-07 Score=84.99 Aligned_cols=222 Identities=9% Similarity=0.006 Sum_probs=164.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 006396 357 GNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNG--KVADARRLLDTIKLHGLEPSAVTYTTFMNAY----CEE---G 427 (647)
Q Consensus 357 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~ 427 (647)
...++|++++..++..++. ....|+.-..++...+ +++++...++.+.... +-+...|+.-...+ ... +
T Consensus 47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~ 124 (306)
T 3dra_A 47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF 124 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence 3446788888888876433 4455666666666677 8888888888887753 33444555444444 444 6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------H
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQ--EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD------L 499 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~ 499 (647)
++++++.+++.+.+.. +-+..+|+.-...+.+.|.++ ++++.++++++.. +-+...|+.-.......+. +
T Consensus 125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 7889999999888764 557778888777777788877 8999999999875 5677778777777767666 8
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 500 RKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN-ADCLLVSLQEHN--ISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 500 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
+++++.+++++..+ +-|...|+.+...+.+.|+... +..+..++.+.+ -+.+...+..++.++.+.|+.++|++++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 99999999998842 3378999999989988887544 556777666532 1346678999999999999999999999
Q ss_pred HHHHH-cC
Q 006396 577 CQMVE-KG 583 (647)
Q Consensus 577 ~~~~~-~~ 583 (647)
+.+.+ .+
T Consensus 282 ~~l~~~~D 289 (306)
T 3dra_A 282 DLLKSKYN 289 (306)
T ss_dssp HHHHHTTC
T ss_pred HHHHhccC
Confidence 99987 45
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.4e-08 Score=87.62 Aligned_cols=170 Identities=9% Similarity=-0.077 Sum_probs=83.2
Q ss_pred hhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC--ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHH----Hhc---CCh
Q 006396 44 TDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS--RLQDAILFLQETAGKEFGPSVVSLNAIMSRY----CKL---GFA 114 (647)
Q Consensus 44 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~---g~~ 114 (647)
.++|+.+++.++..+| .+..+|+.-..++...| ++++++..++.++...+. +..+|+.-...+ ... +++
T Consensus 49 s~~aL~~t~~~L~~nP-~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 49 SERALHITELGINELA-SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp SHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred CHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCCH
Confidence 3456666666665444 44445555555555555 666666666666554332 233444333333 333 455
Q ss_pred hhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC------hhh
Q 006396 115 EVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME--EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ------ISG 186 (647)
Q Consensus 115 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~ 186 (647)
++++.+++++++.. +.+..+|+...-.+.+.|.++ ++++.++.+.+.+ +.|...|+....++...+. +++
T Consensus 127 ~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 127 YREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHH
Confidence 56666666665543 444555555544445555555 5555555555542 2344555544444444433 444
Q ss_pred HHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC
Q 006396 187 AWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN 218 (647)
Q Consensus 187 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 218 (647)
+++.+++++...+. |...|+.+-..+.+.|+
T Consensus 205 El~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 205 ELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhCCC-CccHHHHHHHHHHhcCC
Confidence 44444444443222 33344444333333333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.2e-08 Score=89.20 Aligned_cols=144 Identities=12% Similarity=-0.008 Sum_probs=111.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA 565 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 565 (647)
+..+...+...|++++|...++++. .|+...+..++.+|...|++++|...++++.+.. +.+...+..++.++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4556677888899999999998773 5678899999999999999999999999999863 4567789999999999
Q ss_pred cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 566 EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 566 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.|++++|+..++++++..-......+. ...... +....++..++.++.+.|++++|.+.++++++.++.
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYK------ILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECG------GGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHH------HhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 999999999999999865100000000 000001 123488999999999999999999999999987754
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.01 E-value=1.3e-08 Score=79.80 Aligned_cols=114 Identities=11% Similarity=0.052 Sum_probs=96.3
Q ss_pred CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHH
Q 006396 444 IGPT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATY 521 (647)
Q Consensus 444 ~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~ 521 (647)
+.|+ ...+......+.+.|++++|+..|++.++.. +.+...|..+..+|...|++++|+..++++++ +.| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHH
Confidence 3444 3467788899999999999999999999875 66788999999999999999999999999998 445 58899
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
..++.+|...|++++|.+.|+++++.. |.+...+..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~ 123 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD-PSNEEAREGVRN 123 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHH
Confidence 999999999999999999999999953 334556555544
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=5.2e-09 Score=96.07 Aligned_cols=165 Identities=12% Similarity=0.018 Sum_probs=97.0
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHH-H
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSIL-A 175 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-~ 175 (647)
+...+...+..+.+.|++++|...|+++++.. +.+...+..+...+.+.|++++|...++++... .|+....... .
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~ 192 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ 192 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence 34455666666666666666666666666653 345556666666666666666666666666553 2333222222 2
Q ss_pred HHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCc-CcccHHHHHHHHHhcCCh
Q 006396 176 KGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKL-NVIAYSVLLSSMCKSGRI 254 (647)
Q Consensus 176 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~ 254 (647)
..+...++.+.|.+.+++.....+. +...+..+...+...|++++|.+.++.+.+..... +...+..++..+...|+.
T Consensus 193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~ 271 (287)
T 3qou_A 193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG 271 (287)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence 2244555666666666666655321 44556666666667777777777776666653221 244566666777777777
Q ss_pred hHHHHHHHHHH
Q 006396 255 DEALGLLYEME 265 (647)
Q Consensus 255 ~~a~~~~~~~~ 265 (647)
++|...+++..
T Consensus 272 ~~a~~~~r~al 282 (287)
T 3qou_A 272 DALASXYRRQL 282 (287)
T ss_dssp CHHHHHHHHHH
T ss_pred CcHHHHHHHHH
Confidence 76666666543
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-08 Score=102.20 Aligned_cols=164 Identities=9% Similarity=-0.095 Sum_probs=115.8
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
.|++++|...+++..+.. +.+...+..+...|...|++++|...+++..+.. +.+...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 477888888888887653 4457788888888999999999999999888764 44577888888888999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc---CChhhHHHHHHHHHHc
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN---GDLKNADCLLVSLQEH 547 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~ 547 (647)
+++..+.. +.+...+..+..++...|++++|.+.++++.+.. +.+...+..++.++... |++++|.+.++++.+.
T Consensus 80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 99988864 5567788888899999999999999999988832 23577888888888888 8999999999999885
Q ss_pred CCCCCHHHHHHH
Q 006396 548 NISLTKVAYTTI 559 (647)
Q Consensus 548 ~~~~~~~~~~~l 559 (647)
+ +.+...+..+
T Consensus 158 ~-p~~~~~~~~l 168 (568)
T 2vsy_A 158 G-VGAVEPFAFL 168 (568)
T ss_dssp T-CCCSCHHHHT
T ss_pred C-CcccChHHHh
Confidence 4 3333344333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=2.4e-09 Score=86.88 Aligned_cols=96 Identities=8% Similarity=-0.077 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|+.++..+ +.+...|..++.+|...|++++|...|+++.+.+ +.+...+..++.++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 34444444555555555555555554421 1234445555555555555555555555555432 223344555555555
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 006396 565 AEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~ 582 (647)
..|++++|+..|+++++.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 555555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-07 Score=86.65 Aligned_cols=167 Identities=11% Similarity=-0.029 Sum_probs=125.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHH
Q 006396 454 VIKGLCKQWKLQEAVQLLEDMYVIGV-TPDQ----ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNI 523 (647)
Q Consensus 454 l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~ 523 (647)
.+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...+++++.... .++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 45667888999999999999887421 1221 1233566777788899999999999987322 222 347899
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEH-----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
++.+|...|++++|...++++++. +..+. ..++..++.+|...|++++|+.+++++++..
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~-------------- 226 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS-------------- 226 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH--------------
Confidence 999999999999999999999841 11222 2378899999999999999999999998643
Q ss_pred hhhhCCCCC-CHHHHHHHHHHHHcCC-CHHHHHHHHHHHHh
Q 006396 598 MMLSNGFPP-DQEICEVMLIAFHQGG-DLGSVFELAAVMIK 636 (647)
Q Consensus 598 ~~~~~~~~~-~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~ 636 (647)
...+..+ -..++..++.++.+.| ++++|.+.+++++.
T Consensus 227 --~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 227 --CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --HHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --HHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 0111122 2789999999999999 46999999999874
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.6e-08 Score=93.96 Aligned_cols=174 Identities=14% Similarity=0.016 Sum_probs=110.9
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQ 465 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~ 465 (647)
.++++.|...|... ...|...|++++|...|....+. +-.+ ...+|..+...|...|+++
T Consensus 29 ~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~ 93 (307)
T 2ifu_A 29 KPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMP 93 (307)
T ss_dssp SCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGG
T ss_pred CCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHH
Confidence 35566666665544 23455666777766666655432 1000 1235666667777777777
Q ss_pred HHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHhhcCChh
Q 006396 466 EAVQLLEDMYVIGV---TP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 466 ~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~ 535 (647)
+|+..+++..+... .+ ...++..+..+|.. |++++|+..+++.++. +..+ ...++..++.+|...|+++
T Consensus 94 ~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 172 (307)
T 2ifu_A 94 EAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFD 172 (307)
T ss_dssp GGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHH
Confidence 77777777665310 11 12456677777777 8888888888887752 1001 1466778888888888888
Q ss_pred hHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 536 NADCLLVSLQEH----NISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 536 ~A~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
+|+..++++.+. +..+. ...+..++.++...|++++|+..|++++
T Consensus 173 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 173 EAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 888888888762 11111 1256666777777888999988888887
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.92 E-value=4.7e-08 Score=81.46 Aligned_cols=129 Identities=13% Similarity=0.013 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+...|++++|...+++..+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345666777778888888888888887732 2357778888888888888888888888888753 44566888888888
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH--HHHHcCCCHHHHHHHHHHHH
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML--IAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~ 635 (647)
...|++++|+..++++++.. |.+...+..+. ..+.+.|++++|.+.+++..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~---------------------p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 88888888888888888876 55666664444 44777888888888887764
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.88 E-value=5e-07 Score=83.30 Aligned_cols=170 Identities=10% Similarity=-0.051 Sum_probs=125.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHhCC---CCCC--H
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ------ITYNTIIRSFCKCKDLRKAFQLLNQMWLHN---LEPT--S 518 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~p~--~ 518 (647)
.+...+..+...|++++|.+.+.+..+.... .. ..+..+...+...|++++|...++++.+.. ..+. .
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3445566777888999998888887775322 22 223445666778899999999999988631 1122 5
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEH--NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
.+++.++..|...|++++|...++++.+. ..+.+ ..++..++.+|...|++++|+.+++++++...
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~-------- 227 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC-------- 227 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHH--------
Confidence 58899999999999999999999999831 11222 25788999999999999999999999986430
Q ss_pred hHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHH-HHHHHHHHh
Q 006396 593 KSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSV-FELAAVMIK 636 (647)
Q Consensus 593 ~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 636 (647)
..+... -..++..++.+|.+.|++++| ...+++++.
T Consensus 228 --------~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 228 --------RINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp --------HTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred --------hcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 001112 267899999999999999999 777888763
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.87 E-value=2.1e-08 Score=84.64 Aligned_cols=122 Identities=9% Similarity=0.084 Sum_probs=79.8
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH-HhhcCCh--h
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG-LCVNGDL--K 535 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~ 535 (647)
...|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..++.+ +...|++ +
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 34567777777777776653 4556677777777777777777777777777632 2246666666766 6667776 7
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+|...++++.+.+ +.+...+..++.++...|++++|+..++++++..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777777643 3345567777777777777777777777777665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-08 Score=90.86 Aligned_cols=207 Identities=9% Similarity=-0.044 Sum_probs=150.5
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 390 KNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 390 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
..|++++|.+++++..+.. +.. .+...++++.|...|... ...|...|++++|..
T Consensus 3 ~~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 3567788888888776531 111 011147788887777664 456778899999999
Q ss_pred HHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--C-CCCC--HHHHHHHHHHHhhcCChhhHHH
Q 006396 470 LLEDMYVIGV---TP--DQITYNTIIRSFCKCKDLRKAFQLLNQMWLH--N-LEPT--SATYNILIDGLCVNGDLKNADC 539 (647)
Q Consensus 470 ~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~-~~p~--~~~~~~l~~~~~~~g~~~~A~~ 539 (647)
.+.+..+... .+ -..++..+..+|...|++++|...+++.++. . -.+. ..++..+..+|.. |++++|+.
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 9998876321 11 1347888899999999999999999998762 1 1222 4678889999988 99999999
Q ss_pred HHHHHHHcCCC---C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC-HHHHHH
Q 006396 540 LLVSLQEHNIS---L--TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD-QEICEV 613 (647)
Q Consensus 540 ~~~~~~~~~~~---~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 613 (647)
.++++++.... + ...++..++.++...|++++|+..|+++++.... .+..+. ...+..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~----------------~~~~~~~~~~~~~ 200 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKE----------------MENYPTCYKKCIA 200 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------cCChhHHHHHHHH
Confidence 99999863111 1 1357888999999999999999999999874300 001111 346778
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 614 MLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 614 l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
++.++...|++++|...+++++ ..+
T Consensus 201 ~g~~~~~~g~~~~A~~~~~~al-~~p 225 (307)
T 2ifu_A 201 QVLVQLHRADYVAAQKCVRESY-SIP 225 (307)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHT-TST
T ss_pred HHHHHHHcCCHHHHHHHHHHHh-CCC
Confidence 8889999999999999999998 544
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.85 E-value=4.5e-08 Score=91.99 Aligned_cols=127 Identities=13% Similarity=-0.048 Sum_probs=82.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----------------HHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT----------------SATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
.+..+...+.+.|++++|...|+++++. .|+ ...|..+..+|.+.|++++|+..++++++..
T Consensus 149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 149 IVKERGTVYFKEGKYKQALLQYKKIVSW--LEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH--TTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHH--hhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3444444444555555555555555442 121 4667777777777777777777777777753
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHH-
Q 006396 549 ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSV- 627 (647)
Q Consensus 549 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A- 627 (647)
+.+...+..++.++...|++++|+..|+++++.. |.+..++..++.++.+.|+.++|
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------------P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY---------------------PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC---------------------CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3455677777777777777777777777777766 66677777777777777777777
Q ss_pred HHHHHHHH
Q 006396 628 FELAAVMI 635 (647)
Q Consensus 628 ~~~~~~~~ 635 (647)
...+++|.
T Consensus 285 ~~~~~~~~ 292 (336)
T 1p5q_A 285 KKLYANMF 292 (336)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.84 E-value=2.1e-07 Score=81.25 Aligned_cols=126 Identities=10% Similarity=-0.131 Sum_probs=96.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCI 145 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 145 (647)
+..++..+...|++++|+..|+++. .|+..++..++..+...|++++|...|+++.+.. +.+...+..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence 4566777788888888888888775 3467788888888888888888888888888764 4566778888888888
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCh----------------hhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 146 AGSMEEALEFTNDMGRHGVEPDA----------------ITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 146 ~~~~~~a~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
.|++++|.+.|++..+.. +.+. ..+..+..++...|++++|.+.|++....
T Consensus 84 ~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp TTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 888888888888887752 2222 56777777788888888888888887765
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.7e-08 Score=81.46 Aligned_cols=97 Identities=9% Similarity=-0.089 Sum_probs=51.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|+.++..+ +.+...|..++.+|...|++++|...|+++.+.+ +.+...+..++.++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 34444455555555555555555555521 1245555555555555555555555555555532 333445555555555
Q ss_pred hcCCHHHHHHHHHHHHHcC
Q 006396 565 AEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~~~ 583 (647)
..|++++|+..|+++++..
T Consensus 98 ~~g~~~~A~~~~~~al~~~ 116 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARALA 116 (142)
T ss_dssp HTTCHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC
Confidence 5555555555555555543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.84 E-value=8.9e-07 Score=81.60 Aligned_cols=165 Identities=12% Similarity=0.012 Sum_probs=125.9
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhCCC-CCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 006396 418 TFMNAYCEEGNIQRLLALLQEMETKAI-GPTHV----TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PD----QITYN 487 (647)
Q Consensus 418 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~ 487 (647)
..+..+...|++++|...++...+... .|+.. .+..+...+...|++++|+..++++.+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346678889999999999999887431 22221 2334666677788999999999999984322 22 23688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHh----C-CCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCCC-HHHH
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWL----H-NLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISLT-KVAY 556 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~-~~~~ 556 (647)
.+..+|...|++++|..+++++++ . +..+. ..++..++.+|...|++++|...++++++. +..+. ..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 999999999999999999999984 1 12222 457889999999999999999999998852 22222 5588
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEG-DVHKAMTFFCQMVEK 582 (647)
Q Consensus 557 ~~l~~~~~~~g-~~~~A~~~~~~~~~~ 582 (647)
..++.++...| ++++|...+++++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 99999999999 469999999998863
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.4e-07 Score=73.93 Aligned_cols=116 Identities=15% Similarity=0.167 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|..+++++.+.. +.+..++..++.+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 4566667777777888888888888777632 2356777778888888888888888888887753 4456677788888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
+...|++++|...++++.+.. |.+...+..++.++.+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD---------------------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC---------------------CCcHHHHHHHHHHHHhc
Confidence 888888888888888888776 66677777777666544
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.84 E-value=7.3e-08 Score=76.69 Aligned_cols=120 Identities=12% Similarity=-0.030 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
.+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|...++++.+.. +.+...+..++
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 345567778888888888888888888888742 2357788888888888888888888888888753 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGD 623 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 623 (647)
.++...|++++|+..++++++.. |.+...+..++.++.+.|+
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD---------------------SSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------GGGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC---------------------CCchHHHHHHHHHHHHhcC
Confidence 88888899999999998888876 5556777777777766553
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.83 E-value=6.2e-08 Score=78.24 Aligned_cols=98 Identities=8% Similarity=-0.048 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
...+..+...+.+.|++++|...|++++. ..| ++..|..++.+|...|++++|+..|+++.+.. |.++..|..++.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 44667777788888888888888888888 345 58888888888888889999999888888853 445678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++...|++++|+..|+++++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8888899999999998888865
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=9.9e-08 Score=75.60 Aligned_cols=119 Identities=12% Similarity=0.018 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
...+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 4556667777778888888888888877732 2357777888888888888888888888888753 4456678888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 563 HCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
+...|++++|...++++++.. |.+...+..++.++.+.|++
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD---------------------PDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHTTC
T ss_pred HHHhCCHHHHHHHHHHHHhcC---------------------ccchHHHHHHHHHHHHHhcC
Confidence 888888888888888888876 66777888888888777764
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.82 E-value=5.8e-08 Score=76.40 Aligned_cols=95 Identities=13% Similarity=-0.002 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHC 564 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~ 564 (647)
.+..+...+...|++++|...|++.++.. +.+...|..++.+|...|++++|...++++++.+ +.+...+..++.++.
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 34445555555555555555555555521 1235555555555555555555555555555532 223445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 006396 565 AEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 565 ~~g~~~~A~~~~~~~~~ 581 (647)
..|++++|+..++++++
T Consensus 84 ~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 84 AVKEYASALETLDAART 100 (126)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHH
Confidence 55555555555555554
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.80 E-value=1e-06 Score=81.18 Aligned_cols=168 Identities=8% Similarity=-0.034 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC---CCC--H
Q 006396 414 VTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTH-----VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGV---TPD--Q 483 (647)
Q Consensus 414 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~--~ 483 (647)
..+...+..+...|++++|...++...+....... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 34455667788889999999998887765322111 1233455667788899999999999886421 112 3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC--CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC----CCCC-
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP--TSATYNILIDGLCVNGDLKNADCLLVSLQEHN----ISLT- 552 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~- 552 (647)
.+++.+...|...|++++|..+++++.+ .+..+ ...++..++.+|...|++++|...++++++.. ....
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4788899999999999999999999873 11111 12688899999999999999999999988531 1111
Q ss_pred HHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 006396 553 KVAYTTIIKAHCAEGDVHKA-MTFFCQMVE 581 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~ 581 (647)
..++..++.++...|++++| ...+++++.
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 55788999999999999999 788888875
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.79 E-value=4e-08 Score=77.17 Aligned_cols=106 Identities=15% Similarity=0.078 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+.+.|++++|+..|+++++.. |.+..+|..++.+|...|++++|+..++++++.. |+
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~--~~---------- 74 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG--RE---------- 74 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HH----------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC--cc----------
Confidence 4567788999999999999999999999863 4467789999999999999999999999998754 00
Q ss_pred hhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 598 MMLSNGFPPD----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 598 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
.+++ ..+|..++.++...|++++|++.++++++..+.|+
T Consensus 75 ------~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~~ 117 (127)
T 4gcn_A 75 ------TRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPE 117 (127)
T ss_dssp ------TTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred ------cchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence 0111 35788899999999999999999999998766554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=5e-08 Score=75.79 Aligned_cols=99 Identities=7% Similarity=-0.011 Sum_probs=79.1
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhh
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (647)
.+..++..+.+.|++++|...++++++.. +.+...|..++.++...|++++|+..++++++..
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~---------------- 81 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD---------------- 81 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----------------
Confidence 34566777888889999999998888853 4466788888888888999999999999988887
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 600 LSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..++..++.++.+.|++++|++.++++++.+|.
T Consensus 82 -----P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 82 -----PKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp -----TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred -----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 777888888999999999999999999888876543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.2e-07 Score=82.13 Aligned_cols=96 Identities=7% Similarity=-0.027 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCCCC----H
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH--NISLT----K 553 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~----~ 553 (647)
++..+...+...|++++|...+++... .+..| ...++..+...+...|++++|...+++..+. ..+.+ .
T Consensus 28 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 107 (203)
T 3gw4_A 28 ARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAAS 107 (203)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHH
Confidence 344444444444444444444444433 01111 1333444444444555555555544444431 00001 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
.++..++.++...|++++|...+++++
T Consensus 108 ~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 108 ANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 134444444555555555555555444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=1.4e-07 Score=83.51 Aligned_cols=128 Identities=8% Similarity=-0.100 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhc
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT--KVAYTTIIKAHCAE 566 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~ 566 (647)
+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+...... .|. ...+..+..++...
T Consensus 108 yA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al~~L 184 (282)
T 4f3v_A 108 FAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAAANL 184 (282)
T ss_dssp HHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHHHHC
Confidence 334444555555555555555442 2322244444445555555555555555433210 110 12445555555555
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
|++++|+..|+++.... ..| ....+...+.++.+.|+.++|...|+++...+|
T Consensus 185 G~~~eAl~~l~~a~~g~--------------------~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 185 ALFTEAERRLTEANDSP--------------------AGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp TCHHHHHHHHHHHHTST--------------------TTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHhcCC--------------------CCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 55555555555554321 102 234555555555555555555555555555443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.5e-08 Score=73.81 Aligned_cols=103 Identities=9% Similarity=-0.085 Sum_probs=83.8
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~------------- 70 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI------------- 70 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-------------
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 35566777888888888888888888888753 4456688888888888899999999999888876
Q ss_pred HhhhhCCCCC--CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCCC
Q 006396 597 CMMLSNGFPP--DQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 597 ~~~~~~~~~~--~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~ 641 (647)
|. +...+..++.++.+. |++++|.+.++++++.++.+
T Consensus 71 --------~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~ 110 (112)
T 2kck_A 71 --------EDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHH 110 (112)
T ss_dssp --------CCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred --------cccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCC
Confidence 56 788888899999999 99999999999988876544
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=8.3e-08 Score=84.98 Aligned_cols=189 Identities=9% Similarity=-0.075 Sum_probs=125.6
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHH-------HHHHHhcCChhHHHHHHHHhhcCCCC-----cC----------
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIV-------IDGLCQQSRLQDAILFLQETAGKEFG-----PS---------- 97 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~---------- 97 (647)
..++++.|++.|.+++...| ....+|..+ ..++...++..+++..+++.....+. .+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP-~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDE-SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhCh-hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 45778888888888887555 667778777 67777777777787777776652111 01
Q ss_pred -----HHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC--hhh
Q 006396 98 -----VVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPD--AIT 170 (647)
Q Consensus 98 -----~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~ 170 (647)
......++..+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...+.. .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 2244556777888888888888888777653 433355556667778888888888887554421 111 235
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHhcCCCCC--cchHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 006396 171 YSILAKGFHLLSQISGAWKVIQKLLIKGSDPD--IVTYTVLICGYCQIGNVEEGLKLREVMLSQ 232 (647)
Q Consensus 171 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 232 (647)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 66677777777888888888777764322243 224455566667777777777777777765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=1.6e-06 Score=79.70 Aligned_cols=171 Identities=10% Similarity=-0.019 Sum_probs=97.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc-C-Chhh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQS-RLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKL-G-FAEV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g-~~~~ 116 (647)
.....++|+++++.++..+| .+..+|+....++...| .+++++..++.++...+. +..+|+.-...+.+. + ++++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP-~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~ 143 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNP-AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVS 143 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHH
T ss_pred hCCCCHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHH
Confidence 34445667777777776554 45556666666666666 477777777777765543 555666666666555 5 6677
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC-----
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSME--------EALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ----- 183 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----- 183 (647)
++.+++++++.. +.|..+|+...-.+.+.+.++ ++++.++++.+.. +.|...|+....++.+.+.
T Consensus 144 EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~ 221 (349)
T 3q7a_A 144 EIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSS 221 (349)
T ss_dssp HHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccch
Confidence 777777777654 445555555444444444444 6666666666542 3355666666555555554
Q ss_pred --hhhHHHHHHHHHhcCCCCCcchHHHHHHHHHh
Q 006396 184 --ISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQ 215 (647)
Q Consensus 184 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 215 (647)
++++++.+++++...+. |...|+.+-..+.+
T Consensus 222 ~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 222 RSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence 45555555555544222 34444443333333
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=2.2e-06 Score=78.75 Aligned_cols=232 Identities=10% Similarity=0.002 Sum_probs=162.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 66 NSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG-FAEVAKGLFCLMLKYGLHPDAFSYNILIHGLC 144 (647)
Q Consensus 66 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 144 (647)
+..+.......+..++|+.+++.++..++. +..+|+.-...+...| .+++++..++.++... +.+..+|+.-...+.
T Consensus 57 ~~~~r~~~~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~ 134 (349)
T 3q7a_A 57 MDYFRAIAAKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLD 134 (349)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 333434444555667999999999987644 6678888888888888 5999999999999886 567778888777776
Q ss_pred hc-C-CHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChh--------hHHHHHHHHHhcCCCCCcchHHHHHHHHH
Q 006396 145 IA-G-SMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQIS--------GAWKVIQKLLIKGSDPDIVTYTVLICGYC 214 (647)
Q Consensus 145 ~~-~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 214 (647)
.. + ++++++++++.+.+.. +.+..+|+...-++...+.++ ++++.++++++..+. |..+|+.....+.
T Consensus 135 ~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~ 212 (349)
T 3q7a_A 135 RISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRV 212 (349)
T ss_dssp HHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHT
T ss_pred HhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 66 6 8899999999998863 457778877666666666666 888999998887543 6777888777777
Q ss_pred hcCC-------hHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCCh--------------------hHHHHHHHHHHHC
Q 006396 215 QIGN-------VEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRI--------------------DEALGLLYEMEAV 267 (647)
Q Consensus 215 ~~~~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~ 267 (647)
+.+. ++++++.++......+. |...|+.+-..+.+.|+. ....+...++...
T Consensus 213 ~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (349)
T 3q7a_A 213 SRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSD 291 (349)
T ss_dssp TSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-
T ss_pred hccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhc
Confidence 7765 67888888888877544 777787776666666653 1222222222221
Q ss_pred C-----CCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 268 G-----LKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 268 ~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
+ -.++...+..++..|...|+.++|.++++.+.+.
T Consensus 292 ~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 292 PLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred ccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 1 0245566677777777777777777777777543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.77 E-value=2.9e-08 Score=90.65 Aligned_cols=195 Identities=11% Similarity=-0.025 Sum_probs=120.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 412 SAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIR 491 (647)
Q Consensus 412 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 491 (647)
+...+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 44566667777777888888888888777653 3356677777777888888888888888877653 455677777788
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCH-HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTS-ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 570 (647)
++...|++++|...|+++.+. .|+. ..+...+....+ ..++... ........+.+......+... ..|+++
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~i~~~l~~l--~~~~~~ 152 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL--AKEQRLNFGDDIPSALR---IAKKKRW-NSIEERRIHQESELHSYLTRL--IAAERE 152 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--HHHTTCCCCSHHHHHHH---HHHHHHH-HHHHHTCCCCCCHHHHHHHHH--HHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHH---HHHHHHH-HHHHHHHHhhhHHHHHHHHHH--HHHHHH
Confidence 888888888888888877762 2210 011111111111 1111111 222222334444444444332 258888
Q ss_pred HHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhC
Q 006396 571 KAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG-GDLGSVFELAAVMIKS 637 (647)
Q Consensus 571 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 637 (647)
+|++.++++++.. |.+......+...+.+. +.+++|.+++.++.+.
T Consensus 153 ~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 153 RELEECQRNHEGH---------------------EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HHHTTTSGGGTTT---------------------SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHHHhhhccc---------------------cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 8888888877765 55555556666666665 6678888888877653
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.76 E-value=4.7e-08 Score=79.20 Aligned_cols=109 Identities=11% Similarity=-0.001 Sum_probs=92.0
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC
Q 006396 435 LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL 514 (647)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 514 (647)
.|+.+.... +.+...+..+...+...|++++|...|+++.... +.+...|..+..+|...|++++|...|++++..
T Consensus 9 ~~~~al~~~-p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l-- 84 (148)
T 2vgx_A 9 TIAMLNEIS-SDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM-- 84 (148)
T ss_dssp SHHHHTTCC-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred hHHHHHcCC-HhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--
Confidence 455555432 2244567778888999999999999999999875 668888999999999999999999999999983
Q ss_pred CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 515 EP-TSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 515 ~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
.| ++..+..++.+|...|++++|...|+++++.
T Consensus 85 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 DIXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45 5788999999999999999999999999984
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.76 E-value=4.3e-07 Score=75.46 Aligned_cols=130 Identities=8% Similarity=-0.016 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 449 VTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGL 528 (647)
Q Consensus 449 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~ 528 (647)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..++.++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 456667777888899999999998888764 5567788888888999999999999999988842 33578888899999
Q ss_pred hhcCChhhHHHHHHHHHHcCCCCCHHHHHH--HHHHHHhcCCHHHHHHHHHHHHH
Q 006396 529 CVNGDLKNADCLLVSLQEHNISLTKVAYTT--IIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 529 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
...|++++|...++++.+.. +.+...+.. .+..+...|++++|+..+++...
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999998853 334555533 34447788999999999887754
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.8e-08 Score=79.22 Aligned_cols=99 Identities=13% Similarity=0.029 Sum_probs=82.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 482 DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
+...+..+...+...|++++|...|++.++. .| +...|..+..+|...|++++|+..++++++.. +.+...|..++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4556778888888899999999999998883 34 68888888899999999999999999998853 44567888888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|+..|+++++..
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999988876
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.8e-08 Score=88.69 Aligned_cols=100 Identities=12% Similarity=-0.084 Sum_probs=78.4
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|++++...+. +...+..++.++.+.|++++|...++++++.. +.+...+..+.
T Consensus 2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 34566777888888888888888888888775432 66778888888888888888888888888764 45667778888
Q ss_pred HHHHhcCCHHHHHHHHHHHhhC
Q 006396 141 HGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
.++...|++++|...|++..+.
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l 101 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL 101 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh
Confidence 8888888888888888887664
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.73 E-value=9.1e-08 Score=80.66 Aligned_cols=120 Identities=8% Similarity=0.066 Sum_probs=86.3
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHH-HHhcCCh--hh
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSR-YCKLGFA--EV 116 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~--~~ 116 (647)
..|+++.|...++.++...+ .++..|..++.++...|++++|+..|+++....+ .+...+..++.+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcchHH
Confidence 45677777778887776554 5667788888888888888888888888776543 256677777777 6677887 88
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 006396 117 AKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 117 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 162 (647)
|...++++.+.. +.+...+..+...+...|++++|...|+.+.+.
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888887764 445667777777888888888888888887775
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.72 E-value=1.7e-07 Score=74.96 Aligned_cols=101 Identities=8% Similarity=-0.087 Sum_probs=63.5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
.+...+..+...+...|++++|...|++.+... +.+...+..++.++...|++++|...++++.+.+ +.+...+..++
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345566666666666677777777766666631 2245666666666666667777776666666642 33455666666
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|+..++++++..
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~ 107 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLA 107 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHC
Confidence 66666677777766666666543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=3.1e-07 Score=71.09 Aligned_cols=98 Identities=9% Similarity=-0.038 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+...|++++|...+++..... +.+...+..++.++...|++++|...++++.+.. +.+...+..++.++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 445556666666677777777776666531 2245666666666666667777766666666642 33455666666666
Q ss_pred HhcCCHHHHHHHHHHHHHcC
Q 006396 564 CAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~ 583 (647)
...|++++|...++++++.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 66667777766666666654
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.72 E-value=2e-07 Score=74.07 Aligned_cols=118 Identities=8% Similarity=-0.095 Sum_probs=82.8
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILI 140 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 140 (647)
.+...+..++..+...|++++|+..|+++....+ .+..++..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la 91 (133)
T 2lni_A 14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP-KDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA 91 (133)
T ss_dssp CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT-TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence 4456677778888888888888888888776543 256677777777888888888888888877764 44566777777
Q ss_pred HHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 006396 141 HGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLL 181 (647)
Q Consensus 141 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (647)
..+...|++++|.+.|++..+.. +.+...+..+..++...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHh
Confidence 77778888888888887776642 22344555555555443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.71 E-value=3.7e-07 Score=71.50 Aligned_cols=101 Identities=17% Similarity=0.183 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+...|++++|.+.++++.+.. +.+..++..++.++...|++++|+.+++++.+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-------------- 73 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-------------- 73 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--------------
Confidence 6788889999999999999999999999863 4567789999999999999999999999999877
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+...+..++.++...|++++|...++++.+.++.
T Consensus 74 -------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 109 (125)
T 1na0_A 74 -------PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN 109 (125)
T ss_dssp -------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 778899999999999999999999999999987643
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.70 E-value=1.6e-08 Score=95.09 Aligned_cols=149 Identities=9% Similarity=-0.102 Sum_probs=97.0
Q ss_pred ChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--------------HHhHHHHHHHH
Q 006396 43 HTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--------------VVSLNAIMSRY 108 (647)
Q Consensus 43 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~ 108 (647)
+++.|...|+......+ .+...+..++..+...|++++|+..|++++...+... ..++..+..++
T Consensus 128 ~~~~A~~~~~~a~~~~p-~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~ 206 (336)
T 1p5q_A 128 SFEKAKESWEMNSEEKL-EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206 (336)
T ss_dssp EEECCCCGGGCCHHHHH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecccccchhcCCHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444332111 3455677778888888888888888888776543322 45677777777
Q ss_pred HhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH-
Q 006396 109 CKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA- 187 (647)
Q Consensus 109 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a- 187 (647)
.+.|++++|+..|+++++.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...|+.+++
T Consensus 207 ~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 284 (336)
T 1p5q_A 207 LKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLARE 284 (336)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777664 4456677777777777777777777777776652 33556666677777777766666
Q ss_pred HHHHHHH
Q 006396 188 WKVIQKL 194 (647)
Q Consensus 188 ~~~~~~~ 194 (647)
...++.|
T Consensus 285 ~~~~~~~ 291 (336)
T 1p5q_A 285 KKLYANM 291 (336)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3344444
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.69 E-value=7.3e-07 Score=68.90 Aligned_cols=113 Identities=10% Similarity=0.013 Sum_probs=93.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 447 THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILID 526 (647)
Q Consensus 447 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~ 526 (647)
....+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 80 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAA 80 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 45677888889999999999999999999864 5678889999999999999999999999999842 335888999999
Q ss_pred HHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 527 GLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 527 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
++...|++++|...++++.+.+ +.+...+..+..+
T Consensus 81 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 115 (118)
T 1elw_A 81 ALEFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence 9999999999999999999853 3345555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.2e-07 Score=71.74 Aligned_cols=116 Identities=15% Similarity=0.017 Sum_probs=90.8
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAY 556 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 556 (647)
.+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...++++.+.. +.+...+
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 102 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG--LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL 102 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH--HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence 3556677778888888888888888888887 4455 6778888888888999999999998888753 4456688
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ 620 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 620 (647)
..++.++...|++++|...++++++.. |.+..++..+.....+
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSLE---------------------PKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHCS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcC---------------------CCcHHHHHHHHHHHhh
Confidence 888888999999999999999988876 5666777666665443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.69 E-value=2.9e-07 Score=72.19 Aligned_cols=98 Identities=16% Similarity=0.105 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC--CCCC----HHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHN--ISLT----KVAY 556 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~ 556 (647)
..+..+...+.+.|++++|+..|+++++ +.| +...|..++.+|...|++++|+..++++++.+ ..++ ..++
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~--~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIE--LDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4566788889999999999999999988 445 58889999999999999999999999988632 1111 2367
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 557 TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 557 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..++.++...|++++|++.|++++...
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 788899999999999999999998854
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=4.3e-07 Score=78.08 Aligned_cols=133 Identities=11% Similarity=-0.022 Sum_probs=91.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CC--------------CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EP--------------TSATYNILIDGLCVNGDLKNADCLLVSLQEHNI 549 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 549 (647)
.+..+...+...|++++|...|+++++... .| ....+..++.+|...|++++|...++++++..
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~- 118 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID- 118 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence 344555566666666666666666665210 11 02677888888999999999999999998853
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHH-
Q 006396 550 SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVF- 628 (647)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~- 628 (647)
+.+...+..++.++...|++++|+..|+++++.. |.+..++..++.++...|+.+++.
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~~~ 177 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN---------------------PNNLDIRNSYELCVNKLKEARKKDK 177 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHC---
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---------------------CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788888999999999999999999998876 677888888888888888888777
Q ss_pred HHHHHHHhCCC
Q 006396 629 ELAAVMIKSGL 639 (647)
Q Consensus 629 ~~~~~~~~~~~ 639 (647)
..++.+...+.
T Consensus 178 ~~~~~~f~~~~ 188 (198)
T 2fbn_A 178 LTFGGMFDKGP 188 (198)
T ss_dssp -----------
T ss_pred HHHHHHhcccc
Confidence 55666655443
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.66 E-value=8.1e-08 Score=77.37 Aligned_cols=98 Identities=11% Similarity=-0.039 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
...+..+...+...|++++|...|+++.... +.+...|..+..++...|++++|...|++++..+ +.++..+..++.+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 4456677788899999999999999999875 6678889999999999999999999999999842 2357888899999
Q ss_pred HhhcCChhhHHHHHHHHHHc
Q 006396 528 LCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~ 547 (647)
|...|++++|...|+++.+.
T Consensus 96 ~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHh
Confidence 99999999999999999974
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=2.8e-07 Score=72.94 Aligned_cols=118 Identities=13% Similarity=-0.014 Sum_probs=77.8
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...+..++..+...|++++|+..|+++....+ .+...+..++..+...|++++|...++++.+.. +.+...+..+...
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 44566667777777777777777777765432 245667777777777777777777777777653 3446666677777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCC
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQ 183 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 183 (647)
+...|++++|...+++..+.. +.+...+..+..++...|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 777777777777777776652 3355556666666655554
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.62 E-value=3.3e-07 Score=79.25 Aligned_cols=84 Identities=11% Similarity=-0.054 Sum_probs=35.2
Q ss_pred hcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhcCCH
Q 006396 75 QQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKY----GL-HPDAFSYNILIHGLCIAGSM 149 (647)
Q Consensus 75 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~ 149 (647)
..|++++|...++.... .+.....++..+...+...|++++|...++++.+. +. +....++..+...+...|++
T Consensus 4 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ---CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred ccccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34555555553332222 11122334455555555555555555555554431 00 11122344444455555555
Q ss_pred HHHHHHHHHH
Q 006396 150 EEALEFTNDM 159 (647)
Q Consensus 150 ~~a~~~~~~~ 159 (647)
++|.+.+++.
T Consensus 83 ~~A~~~~~~a 92 (203)
T 3gw4_A 83 DAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-07 Score=71.43 Aligned_cols=98 Identities=10% Similarity=-0.070 Sum_probs=75.1
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
...|..++..+...|++++|+..|++++...+ .+...|..++.++.+.|++++|...|+++++.. +.+...+..+..+
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATA 81 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 34566777788888888888888888877543 256778888888888888888888888888764 4556777778888
Q ss_pred HHhcCCHHHHHHHHHHHhhC
Q 006396 143 LCIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~ 162 (647)
+...|++++|...|++..+.
T Consensus 82 ~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 82 QIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhCHHHHHHHHHHHHHh
Confidence 88888888888888877664
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=5e-05 Score=69.46 Aligned_cols=186 Identities=8% Similarity=-0.076 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHH
Q 006396 429 IQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQW--KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD-LRKAFQL 505 (647)
Q Consensus 429 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~ 505 (647)
+++++.+++.+.... +-+..+|+.-...+...+ .+++++.+++++.+.. +-+..+|+.-.......|. +++++++
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~ 167 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 167 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 456666777666643 446666766666666666 3778888888887764 5666777766666666776 5788888
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHhhc--------------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----
Q 006396 506 LNQMWLHNLEPTSATYNILIDGLCVN--------------GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE----- 566 (647)
Q Consensus 506 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----- 566 (647)
++.+++.+ +-|...|+....++... +.++++++.+.+++... |-|..+|+.+-..+...
T Consensus 168 ~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 168 TDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccc
Confidence 88887742 23567776666655544 45778888888888753 55666777655555554
Q ss_pred ------CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHH---HHHHcCCCHHHHHHHHHHHHhC
Q 006396 567 ------GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVML---IAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 567 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.++++++.++++++.. |.+.-++..++ ......|..++...++.++.+.
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~---------------------pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELE---------------------PENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhC---------------------cccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 45789999999999876 44433333322 2233568888999999999886
Q ss_pred CC
Q 006396 638 GL 639 (647)
Q Consensus 638 ~~ 639 (647)
+|
T Consensus 305 Dp 306 (331)
T 3dss_A 305 DP 306 (331)
T ss_dssp CG
T ss_pred Cc
Confidence 64
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.60 E-value=8.3e-07 Score=72.01 Aligned_cols=102 Identities=17% Similarity=-0.011 Sum_probs=92.0
Q ss_pred CCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhh
Q 006396 516 PTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDY 591 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~ 591 (647)
.+...+..++..+...|++++|...|+++.+. .|+ ...+..++.++...|++++|+..++++++..
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-------- 95 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-------- 95 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC--------
Confidence 35788899999999999999999999999984 465 5688899999999999999999999999887
Q ss_pred hhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 592 TKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+...+..++.++...|++++|...++++++.++.
T Consensus 96 -------------~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~ 131 (148)
T 2dba_A 96 -------------GGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPK 131 (148)
T ss_dssp -------------SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSS
T ss_pred -------------ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 778999999999999999999999999999987643
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.60 E-value=3.1e-07 Score=72.98 Aligned_cols=98 Identities=10% Similarity=-0.049 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-------------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK--- 582 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--- 582 (647)
..+...+..+.+.|++++|+..|+++++. .|+ ...|..+..++...|++++|+..++++++.
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 34455566667777777777777777763 232 238899999999999999999999999987
Q ss_pred ----CCcccchhhhhHHHHhhhhCCCCCCHHHH----HHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 583 ----GFEISIRDYTKSFFCMMLSNGFPPDQEIC----EVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 583 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
. |.+...| ...+.++...|++++|+..|+++++..|
T Consensus 90 ~~e~~---------------------pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p 133 (159)
T 2hr2_A 90 RGELN---------------------QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE 133 (159)
T ss_dssp HCCTT---------------------STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred cccCC---------------------CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 6 6668899 9999999999999999999999987543
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.59 E-value=6.7e-07 Score=68.36 Aligned_cols=101 Identities=9% Similarity=-0.092 Sum_probs=80.1
Q ss_pred CCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCC--CHHHHHH
Q 006396 61 RNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHP--DAFSYNI 138 (647)
Q Consensus 61 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 138 (647)
.+...+..++..+...|++++|+..|+++....+ .+...+..++..+...|++++|...|+++.+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 5567788888888888888888888888877543 356678888888888888888888888888774 44 5777888
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHhhCC
Q 006396 139 LIHGLCIA-GSMEEALEFTNDMGRHG 163 (647)
Q Consensus 139 l~~~~~~~-~~~~~a~~~~~~~~~~~ 163 (647)
+...+... |++++|.+.++......
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhcc
Confidence 88888888 88888888888887753
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.59 E-value=6.3e-07 Score=71.61 Aligned_cols=101 Identities=11% Similarity=-0.043 Sum_probs=90.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNIL 524 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l 524 (647)
+.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++++.+ +.+...+..+
T Consensus 6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 4567888999999999999999999999999875 5678889999999999999999999999999842 3358899999
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.+|...|++++|...++++.+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999999874
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.58 E-value=1e-06 Score=69.47 Aligned_cols=94 Identities=13% Similarity=0.048 Sum_probs=63.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-H---HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-S---ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTI 559 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 559 (647)
..+...+...|++++|...|+.+.+. .|+ . ..+..++.++...|++++|...++++.+.. +.+ ..++..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHH
Confidence 34556666777777777777777763 232 2 466667777777777777777777777642 223 4566777
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.++...|++++|+..++++++..
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 777777777777777777777665
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-05 Score=68.66 Aligned_cols=222 Identities=12% Similarity=0.030 Sum_probs=155.8
Q ss_pred HhcCCH-HHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 006396 354 VKLGNI-GEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGK----------VADARRLLDTIKLHGLEPSAVTYTTFMNA 422 (647)
Q Consensus 354 ~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 422 (647)
.+.|.+ ++|++++..++..++. +..+|+.--..+...+. ++++...++.+.... +-+..+|+.-...
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 345554 4788888888876433 33444433333322222 567888888887753 5577788777777
Q ss_pred HHHcC--CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---
Q 006396 423 YCEEG--NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK-LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC--- 496 (647)
Q Consensus 423 ~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 496 (647)
+...+ ++++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++.+++.. +-|...|+.....+...
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~ 195 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQ 195 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSCC
T ss_pred HhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhhc
Confidence 77777 4889999999998875 5577788887777777887 689999999999875 56777777666655544
Q ss_pred -----------CCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc-----------CChhhHHHHHHHHHHcCCCCCH
Q 006396 497 -----------KDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVN-----------GDLKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 497 -----------~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~ 553 (647)
+.++++++++...+. ..| |...|+.+-..+... +.++++++.++++.+. .|+.
T Consensus 196 ~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~ 271 (331)
T 3dss_A 196 PDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN 271 (331)
T ss_dssp C------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred cccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence 457899999999988 445 688887766666655 4578999999999984 4654
Q ss_pred H-HHHHHH---HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 554 V-AYTTII---KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 554 ~-~~~~l~---~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. ++..++ .+....|..+++..++.++.+.+
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 2 222222 12234688889999999999876
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.58 E-value=7.4e-07 Score=73.84 Aligned_cols=99 Identities=14% Similarity=0.054 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHH
Q 006396 446 PTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNIL 524 (647)
Q Consensus 446 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l 524 (647)
.+...+..+...+...|++++|+..|++.++.. +.+...+..+..+|...|++++|+..++++++. .| +...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 345678888899999999999999999999874 567889999999999999999999999999984 45 58899999
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
..+|...|++++|...|+++++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999985
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.58 E-value=3.5e-07 Score=72.34 Aligned_cols=104 Identities=11% Similarity=0.020 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 518 SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
...+..++..+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++... +
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~--~---------- 70 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR--E---------- 70 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH--H----------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc--c----------
Confidence 4667788889999999999999999999863 55677889999999999999999999999987650 0
Q ss_pred hhhhCCCCCC----HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 598 MMLSNGFPPD----QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 598 ~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+++ ..++..++.++...|++++|.+.++++++.++.
T Consensus 71 ------~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 111 (131)
T 1elr_A 71 ------NREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT 111 (131)
T ss_dssp ------STTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred ------cchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence 0122 778999999999999999999999999987653
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.54 E-value=5.8e-07 Score=74.30 Aligned_cols=100 Identities=13% Similarity=0.057 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC--------CC--------CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLH--------NL--------EP-TSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
...+......+.+.|++++|...|.+.+.. .. .| +...|..++.+|.+.|++++|+..+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345677788888889999999998888763 00 22 24677778888888888888888888888
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 546 EHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 546 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.+ +.+...|..++.++...|++++|+..|++++...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 753 4456678888888888888888888888888876
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.7e-07 Score=72.45 Aligned_cols=88 Identities=9% Similarity=0.046 Sum_probs=63.0
Q ss_pred hcCCHHHHHHHHHHHHhCCC-CC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 495 KCKDLRKAFQLLNQMWLHNL-EP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~~~-~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 572 (647)
..|++++|+..|+++++.+. .| +...+..++.+|...|++++|...++++++.. +.+..++..++.++...|++++|
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A 80 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG 80 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence 35777888888888887321 23 46677788888888888888888888888753 44566778888888888888888
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
+..+++++...
T Consensus 81 ~~~~~~al~~~ 91 (117)
T 3k9i_A 81 VELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhC
Confidence 88888888765
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-07 Score=86.03 Aligned_cols=153 Identities=15% Similarity=-0.003 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDG 527 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~ 527 (647)
...+..+...+.+.|++++|...|++.++. .|+... +...++.+++...+. ..+|..+..+
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~ 239 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC 239 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence 345666666677777888888888777764 233221 222333333332221 1378889999
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD 607 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (647)
|.+.|++++|+..++++++.. +.+...|..++.++...|++++|+..|+++++.. |.+
T Consensus 240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~---------------------p~~ 297 (338)
T 2if4_A 240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA---------------------PDD 297 (338)
T ss_dssp HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCC
Confidence 999999999999999999853 4467799999999999999999999999998876 666
Q ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHHHHhCCCCC
Q 006396 608 QEICEVMLIAFH-QGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 608 ~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
..++..+..+.. ..+..+++...++++++..+..
T Consensus 298 ~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~ 332 (338)
T 2if4_A 298 KAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEG 332 (338)
T ss_dssp -----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 778888877744 4577888999999998866543
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.49 E-value=9.1e-07 Score=68.59 Aligned_cols=97 Identities=10% Similarity=-0.121 Sum_probs=72.8
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..+..++..+.+.|++++|+..|++++...+. +...|..+..++...|++++|+..|+++++.. +.+...+..+..++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~ 95 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 95 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35666777788888888888888888775432 56677788888888888888888888887764 44566777777788
Q ss_pred HhcCCHHHHHHHHHHHhhC
Q 006396 144 CIAGSMEEALEFTNDMGRH 162 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~~~~ 162 (647)
...|++++|...+++..+.
T Consensus 96 ~~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 96 TNEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 8888888888888877654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.48 E-value=1.4e-06 Score=68.79 Aligned_cols=99 Identities=14% Similarity=0.088 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC--CCC----HHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI--SLT----KVAYT 557 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~----~~~~~ 557 (647)
..+..+...+...|++++|...++++.... +.+...+..++.++...|++++|...++++.+... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345566667777777777777777777632 23566777777777777888888877777776321 111 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++.++...|++++|...++++.+..
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 77788888888888888888887754
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-06 Score=72.16 Aligned_cols=137 Identities=12% Similarity=0.050 Sum_probs=94.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHH
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLHNL-EPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH----NISL-TKV 554 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~ 554 (647)
++..+...+...|++++|...+++..+... .++ ..++..++..+...|++++|...++++.+. +.++ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456666677777777777777777665210 011 246777888888888888888888887752 1111 133
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF-PPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
++..++.++...|++++|...++++++..-. .+. +....++..++.++...|++++|.+.+++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE----------------LKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH----------------TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH----------------ccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 6777888888999999999999888754200 001 11256778888999999999999999988
Q ss_pred HHhC
Q 006396 634 MIKS 637 (647)
Q Consensus 634 ~~~~ 637 (647)
+++.
T Consensus 155 a~~~ 158 (164)
T 3ro3_A 155 HLEI 158 (164)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7753
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.46 E-value=3.4e-07 Score=90.36 Aligned_cols=118 Identities=14% Similarity=0.052 Sum_probs=75.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 491 RSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 491 ~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
..+.+.|++++|.+.++++++. .| +...+..++.+|.+.|++++|...++++.+.. +.+..++..++.++...|++
T Consensus 14 ~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 14 NDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp SSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 3445667777777777777663 33 46677777777777777777777777777642 33455677777777777777
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHH
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIA--FHQGGDLGSVFELAA 632 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 632 (647)
++|+..++++++.. |.+..++..++.+ +.+.|++++|.+.++
T Consensus 91 ~eA~~~~~~al~~~---------------------p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 91 RAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHS---------------------TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 77777777777665 4445555555555 666677777777766
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.46 E-value=2.1e-06 Score=73.66 Aligned_cols=124 Identities=12% Similarity=-0.029 Sum_probs=83.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC---------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 63 VYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS---------------VVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 63 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
...+..++..+...|++++|+..|++++...+... ..++..+..++...|++++|...++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 34566777778888888888888888876433211 256777777777778888888877777776
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 006396 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAW 188 (647)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (647)
. +.+...+..+..++...|++++|.+.|++..+.. +.+...+..+..++...++..++.
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456677777777777777887777777776652 335556666666665555554444
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.45 E-value=5.3e-06 Score=65.26 Aligned_cols=93 Identities=14% Similarity=0.029 Sum_probs=79.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-C---HHHHHHH
Q 006396 452 TVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQ---ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-T---SATYNIL 524 (647)
Q Consensus 452 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~---~~~~~~l 524 (647)
..+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+. .| + ...+..+
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~l 82 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR--YPTHDKAAGGLLKL 82 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSTTHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH--CCCCcccHHHHHHH
Confidence 445677889999999999999999864 3333 57888899999999999999999999984 33 3 6778899
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
+.++...|++++|...++++.+.
T Consensus 83 a~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 83 GLSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999999999999985
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.44 E-value=1.5e-06 Score=85.47 Aligned_cols=64 Identities=13% Similarity=-0.064 Sum_probs=32.9
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..|..+..+|.+.|++++|+..++++++.. +.+...+..++.+|...|++++|+..|+++++..
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 444455555555555555555555555432 2234455555555555555555555555555544
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.42 E-value=5.6e-07 Score=69.46 Aligned_cols=86 Identities=19% Similarity=0.048 Sum_probs=71.2
Q ss_pred hcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhh
Q 006396 460 KQWKLQEAVQLLEDMYVIG--VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKN 536 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~ 536 (647)
..|++++|+..|++.++.+ -+.+...+..+..+|...|++++|...++++++. .| +...+..++.++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ--FPNHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHcCCHHH
Confidence 4688999999999999864 1334567889999999999999999999999984 44 58899999999999999999
Q ss_pred HHHHHHHHHHc
Q 006396 537 ADCLLVSLQEH 547 (647)
Q Consensus 537 A~~~~~~~~~~ 547 (647)
|...++++++.
T Consensus 80 A~~~~~~al~~ 90 (117)
T 3k9i_A 80 GVELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999985
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.42 E-value=2.2e-06 Score=70.81 Aligned_cols=103 Identities=14% Similarity=0.042 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CC----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 448 HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI-------GV----------TPDQITYNTIIRSFCKCKDLRKAFQLLNQMW 510 (647)
Q Consensus 448 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~----------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 510 (647)
...+......+.+.|++++|+..|.+.+.. .. +.+...|..+..+|.+.|++++|...+++++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 456778888899999999999999999875 10 2234678889999999999999999999999
Q ss_pred hCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 511 LHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 511 ~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
+. .| +...|..++.+|...|++++|...|+++++. .|+..
T Consensus 91 ~~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~p~~~ 131 (162)
T 3rkv_A 91 KR--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN--HPAAA 131 (162)
T ss_dssp HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CGGGH
T ss_pred hc--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc--CCCCH
Confidence 84 45 5889999999999999999999999999985 45433
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.40 E-value=2.6e-06 Score=80.80 Aligned_cols=92 Identities=11% Similarity=-0.066 Sum_probs=78.0
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...|..+..+|.+.|++++|+..++++++.. +.+...+..++.++...|++++|+..++++++..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~------------- 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA------------- 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 46788889999999999999999999999853 4456788899999999999999999999999887
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
|.+..++..+..++...|+.+++.+.
T Consensus 338 --------P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 338 --------PEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred --------CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888899888888888777543
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.40 E-value=3.9e-05 Score=75.31 Aligned_cols=199 Identities=8% Similarity=-0.081 Sum_probs=131.5
Q ss_pred HHHHcCCHHHHHHHHHHHHhCCCCC----------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-
Q 006396 422 AYCEEGNIQRLLALLQEMETKAIGP----------------THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQ- 483 (647)
Q Consensus 422 ~~~~~~~~~~a~~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~- 483 (647)
.+...|++++|++.|..+.+..... ....+..+...|...|++++|.+.+..+.+.- ..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 3445566666666666655432110 01235667777888888888888887766521 11111
Q ss_pred ---HHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc--CCC--C
Q 006396 484 ---ITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEH--NIS--L 551 (647)
Q Consensus 484 ---~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~--~ 551 (647)
.+.+.+...+...|+++.|..+++.... .+..+. ..++..++..|...|++++|..+++++... +.. +
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 1233334444567888999888887764 222333 667888999999999999999999988752 111 1
Q ss_pred -CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC--HHHHHHHHHHHHcCCCHHHHH
Q 006396 552 -TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD--QEICEVMLIAFHQGGDLGSVF 628 (647)
Q Consensus 552 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~ 628 (647)
...++...+..|...|++++|..+++++..... ..+.++. ...+..++..+...|++++|.
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~----------------~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~ 236 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN----------------SIYCPTQTVAELDLMSGILHCEDKDYKTAF 236 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH----------------HSCCCHHHHHHHHHHHHHHTTSSSCHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh----------------cCCCchHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 133778889999999999999999999875320 0011222 356777888888999999999
Q ss_pred HHHHHHHh
Q 006396 629 ELAAVMIK 636 (647)
Q Consensus 629 ~~~~~~~~ 636 (647)
..+.++.+
T Consensus 237 ~~~~~a~~ 244 (434)
T 4b4t_Q 237 SYFFESFE 244 (434)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88877764
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.4e-05 Score=63.46 Aligned_cols=77 Identities=18% Similarity=0.045 Sum_probs=35.4
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAM 573 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 573 (647)
++++|.++|++..+.| .|+.. |...|...+..++|.++|++..+.| +...+..+...|.. .+++++|+
T Consensus 10 d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~ 81 (138)
T 1klx_A 10 DLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 81 (138)
T ss_dssp HHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence 3444555555544433 22222 4444444444444555555554432 33444444444444 44555555
Q ss_pred HHHHHHHHc
Q 006396 574 TFFCQMVEK 582 (647)
Q Consensus 574 ~~~~~~~~~ 582 (647)
.+|+++.+.
T Consensus 82 ~~~~~Aa~~ 90 (138)
T 1klx_A 82 QYYSKACGL 90 (138)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHcC
Confidence 555555443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.34 E-value=3.7e-07 Score=89.75 Aligned_cols=125 Identities=6% Similarity=-0.144 Sum_probs=80.4
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcC--------------HHhHHHHHHHHHhcCChhhHHHHHHHHHhC
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPS--------------VVSLNAIMSRYCKLGFAEVAKGLFCLMLKY 127 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~ 127 (647)
....|..++..+.+.|++++|+..|++++...+... ..+|..+..+|.+.|++++|+..++++++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 345677777888888888888888888776433221 456666777777777777777777777765
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 006396 128 GLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAW 188 (647)
Q Consensus 128 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 188 (647)
. +.+...|..+..+|...|++++|...|++..+.. +.+...+..+..++...++.+++.
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4 4456666667777777777777777777776652 334555666666666666555544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.33 E-value=5.7e-06 Score=68.19 Aligned_cols=133 Identities=15% Similarity=0.091 Sum_probs=90.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHhC----CCCC-CHH
Q 006396 450 TYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-PD----QITYNTIIRSFCKCKDLRKAFQLLNQMWLH----NLEP-TSA 519 (647)
Q Consensus 450 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~ 519 (647)
++..+...+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4555566666677777777777666543100 11 135667777788888888888888877651 1111 145
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEH----NISL-TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.+..++.++...|++++|...+++..+. +.++ ...++..++..+...|++++|.+.++++++.
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 6777888888899999999988888752 1111 1336778888899999999999999988764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=3.1e-05 Score=77.82 Aligned_cols=174 Identities=9% Similarity=-0.032 Sum_probs=140.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWK----------LQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK 497 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 497 (647)
..++|++.++.+...+ +-+...|+.-..++...|+ +++++..++.+.+.. +-+..+|..-..++.+.+
T Consensus 44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~ 121 (567)
T 1dce_A 44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP 121 (567)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcc
Confidence 3467788888888764 3455667766666666666 899999999999875 667888888888888888
Q ss_pred --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC-ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------
Q 006396 498 --DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG-DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE-------- 566 (647)
Q Consensus 498 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-------- 566 (647)
++++++.+++++++.+ +-+...|+.-..++...| .++++.+.++++++.+ +-|..+|.....++...
T Consensus 122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence 7799999999999843 336888988888888888 8999999999999864 55777888877777663
Q ss_pred ------CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 006396 567 ------GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGS 626 (647)
Q Consensus 567 ------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (647)
+.++++++++++++... |.+..+|..+...+.+.|+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~~---------------------P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFTD---------------------PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHC---------------------SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccHHHHHHHHHHHHHHHhhC---------------------CCCccHHHHHHHHHhcCCCccc
Confidence 56799999999999987 8889999999999999888554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.29 E-value=1.1e-05 Score=64.15 Aligned_cols=96 Identities=13% Similarity=-0.077 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-------------HHHHHHHHHHHhhcCChhhHHHHHHHHHHc-----
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-------------SATYNILIDGLCVNGDLKNADCLLVSLQEH----- 547 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----- 547 (647)
+......+...|++++|...|++.++. .|+ ...|..+..++.+.|++++|+..++++++.
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l--~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEI--SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH--HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 344455566667777777777766662 222 338889999999999999999999999984
Q ss_pred CCCCCH-HHH----HHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 548 NISLTK-VAY----TTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 548 ~~~~~~-~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+.|+. ..| ...+.++...|++++|+..|+++++..
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 115654 488 899999999999999999999998754
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.29 E-value=9.5e-05 Score=72.49 Aligned_cols=121 Identities=12% Similarity=0.098 Sum_probs=54.9
Q ss_pred hcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh--CCC--CC-CHHHHHHHHHHHh
Q 006396 460 KQWKLQEAVQLLEDMYVI----GVTPD-QITYNTIIRSFCKCKDLRKAFQLLNQMWL--HNL--EP-TSATYNILIDGLC 529 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~----~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~--~p-~~~~~~~l~~~~~ 529 (647)
..|+++++..+++..... +..+. ..++..+...|...|++++|..+++.+.. .+. .+ ....+..++..|.
T Consensus 107 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (434)
T 4b4t_Q 107 VPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYH 186 (434)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHH
Confidence 345555555555444321 11111 23444555555555555555555555443 111 11 1344555555555
Q ss_pred hcCChhhHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 530 VNGDLKNADCLLVSLQEH--NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
..|++++|..++++.... ....+ ...+..++..+...|++++|...|.++.
T Consensus 187 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 187 KLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 555555555555554421 01111 1233444444555555555555555544
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.28 E-value=6.6e-06 Score=81.18 Aligned_cols=119 Identities=9% Similarity=0.002 Sum_probs=93.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC
Q 006396 455 IKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGD 533 (647)
Q Consensus 455 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 533 (647)
...+.+.|++++|.+.++++.+.. +.+...+..+..+|.+.|++++|...++++++. .| +...+..++.+|...|+
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 344567889999999999998864 556788899999999999999999999999984 45 58888999999999999
Q ss_pred hhhHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 006396 534 LKNADCLLVSLQEHNISLTKVAYTTIIKA--HCAEGDVHKAMTFFC 577 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 577 (647)
+++|.+.++++.+.. +.+...+..+..+ +...|++++|++.++
T Consensus 90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999853 3344566666666 888899999999988
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=5.6e-05 Score=75.94 Aligned_cols=155 Identities=8% Similarity=-0.047 Sum_probs=130.4
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKD----------LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN 531 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 531 (647)
...++|++.++++++.. +.+..+|+.-..++...|+ +++++.+++.+++.+ +-+..+|..-..++.+.
T Consensus 43 ~~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 34578899999999864 5566778777777777776 999999999999842 33689999999999999
Q ss_pred C--ChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCH
Q 006396 532 G--DLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEG-DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQ 608 (647)
Q Consensus 532 g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 608 (647)
| +++++.+.++++.+.+ +-|..+|..-..++...| .+++++++++++++.+ +.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~---------------------p~n~ 178 (567)
T 1dce_A 121 PEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN---------------------FSNY 178 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT---------------------CCCH
T ss_pred ccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC---------------------CCCc
Confidence 9 6799999999999975 567889999999999999 9999999999999987 8889
Q ss_pred HHHHHHHHHHHcC--------------CCHHHHHHHHHHHHhCCCC
Q 006396 609 EICEVMLIAFHQG--------------GDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 609 ~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~~~~~~ 640 (647)
.+|...+.++.+. +.+++|.+.+++++..+|.
T Consensus 179 saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~ 224 (567)
T 1dce_A 179 SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN 224 (567)
T ss_dssp HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS
T ss_pred cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC
Confidence 9999999888773 5679999999999986643
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.19 E-value=7.1e-05 Score=59.32 Aligned_cols=111 Identities=16% Similarity=0.054 Sum_probs=85.9
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNA 537 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A 537 (647)
+++++|...|++..+.| .++.. +...|...+.+++|.++|++..+.| ++..+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46778888888888776 33333 6667777777888888888888754 66777788888877 7888888
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
..+|++..+.| +...+..+...|.. .+++++|+.+|+++.+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888888764 56677788888887 788888888888888876
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.16 E-value=7.4e-06 Score=62.30 Aligned_cols=95 Identities=13% Similarity=0.011 Sum_probs=71.5
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..++..+...|++++|...++++++.. +.+...+..++.++...|++++|+..++++++..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~------------- 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT------------- 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-------------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-------------
Confidence 45667777888888888888888888888753 4466678888888888888888888888888765
Q ss_pred HhhhhCCCCCC------HHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 597 CMMLSNGFPPD------QEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 597 ~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
|.+ ...+..++.++...|++++|.+.+++
T Consensus 69 --------p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 69 --------STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp --------SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred --------CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 444 66777777787777777776655443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.5e-05 Score=61.06 Aligned_cols=81 Identities=14% Similarity=0.017 Sum_probs=64.5
Q ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 501 KAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 501 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
.|...++++++.. +.+...+..++.+|...|++++|...++++++.. +.+...|..++.++...|++++|+..|++++
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4677788887732 3357888888888999999999999999988853 4456688888888999999999999999888
Q ss_pred HcC
Q 006396 581 EKG 583 (647)
Q Consensus 581 ~~~ 583 (647)
+..
T Consensus 81 ~~~ 83 (115)
T 2kat_A 81 AAA 83 (115)
T ss_dssp HHH
T ss_pred Hhc
Confidence 754
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.14 E-value=9.1e-06 Score=76.24 Aligned_cols=117 Identities=10% Similarity=-0.074 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
..+..+...+.+.|++++|...|++++. ..|+... +...|+++++...+. ..+|..++.++
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~ 240 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL 240 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence 3455555566666666666666666665 2333221 122233333322111 13788899999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 564 CAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 564 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
.+.|++++|+..++++++.. |.+..+|..++.+|...|++++|++.++++++.++.
T Consensus 241 ~~~g~~~~A~~~~~~al~~~---------------------p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~ 296 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEE---------------------EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD 296 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----
T ss_pred HHcCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC
Confidence 99999999999999999987 778999999999999999999999999999886653
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.13 E-value=1.5e-05 Score=75.58 Aligned_cols=121 Identities=10% Similarity=-0.086 Sum_probs=81.3
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHhhcCC---------------CCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC
Q 006396 65 TNSIVIDGLCQQSRLQDAILFLQETAGKE---------------FGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL 129 (647)
Q Consensus 65 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~ 129 (647)
.+..++..+.+.|++++|+..|++++... .+.+..+|..+..++.+.|++++|+..++++++..
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 303 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEID- 303 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-
Confidence 46778888899999999999998887510 11234466777777777777777777777777654
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006396 130 HPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187 (647)
Q Consensus 130 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (647)
+.+...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++
T Consensus 304 p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 304 PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777777777777777777777776652 23455555555555555444443
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.12 E-value=2.8e-05 Score=56.42 Aligned_cols=84 Identities=18% Similarity=0.210 Sum_probs=64.8
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
+...+..+...+...|++++|...++++.+.. +.+...+..++.++...|++++|+..++++++..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~------------- 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD------------- 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-------------
Confidence 35667777888888888888888888888753 4456678888888888888888888888888876
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCC
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGG 622 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g 622 (647)
|.+...+..++.++.+.|
T Consensus 74 --------p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 74 --------PNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp --------TTCHHHHHHHHHHHHHHC
T ss_pred --------CCCHHHHHHHHHHHHhcC
Confidence 667777877777776543
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.09 E-value=4.5e-06 Score=66.21 Aligned_cols=88 Identities=10% Similarity=-0.044 Sum_probs=69.2
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD----------VHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
.+.+++|.+.+++..+.+ +.+...|..+..++...|+ +++|+..|+++++.+
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld----------------- 76 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID----------------- 76 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-----------------
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-----------------
Confidence 345667777777777643 4455566666666666655 569999999999998
Q ss_pred hCCCCCCHHHHHHHHHHHHcCC-----------CHHHHHHHHHHHHhCCCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGG-----------DLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..+|..++.+|...| ++++|++.|+++++.+|.
T Consensus 77 ----P~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~ 123 (158)
T 1zu2_A 77 ----PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 123 (158)
T ss_dssp ----TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ----cCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCC
Confidence 788999999999999875 899999999999997654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.01 E-value=6.3e-05 Score=73.55 Aligned_cols=132 Identities=7% Similarity=-0.055 Sum_probs=96.4
Q ss_pred HHHhcCCHHHHHHHHHHHHhC---CCC---CC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLH---NLE---PT-SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYT 557 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~---~~~---p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~ 557 (647)
.+...|++++|+.++++.++. -+. |+ ..+++.|+.+|...|++++|..+++++++. -+.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355778999999888887751 122 22 567889999999999999999999988741 12232 33788
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.++..|...|++++|+.+++++++.. ......+-|........+..++...|++++|...+.++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~-------------~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAIL-------------LVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH-------------HHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988521 0000001112245667888999999999999999999875
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.00 E-value=3.4e-05 Score=57.16 Aligned_cols=66 Identities=17% Similarity=0.052 Sum_probs=53.5
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+...+..++.+|...|++++|+..|+++++.+ +.+...|..++.++...|++++|+..++++++..
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 71 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA 71 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 57778888888888888888888888888853 4456688888888888888888888888887643
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.92 E-value=9.1e-05 Score=56.58 Aligned_cols=80 Identities=19% Similarity=0.143 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHH
Q 006396 466 EAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQ 545 (647)
Q Consensus 466 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 545 (647)
+++..+++..+.. +.+...+..+..+|...|++++|...++++++.. +.+...|..++.+|...|++++|...|+++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4678888888764 5678889999999999999999999999999842 3358889999999999999999999999998
Q ss_pred Hc
Q 006396 546 EH 547 (647)
Q Consensus 546 ~~ 547 (647)
+.
T Consensus 81 ~~ 82 (115)
T 2kat_A 81 AA 82 (115)
T ss_dssp HH
T ss_pred Hh
Confidence 73
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.91 E-value=5.8e-05 Score=54.65 Aligned_cols=81 Identities=14% Similarity=0.040 Sum_probs=49.0
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHH
Q 006396 62 NVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIH 141 (647)
Q Consensus 62 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 141 (647)
+...+..++..+...|++++|+..|+++....+ .+..++..+..++.+.|++++|...|+++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 344566666666777777777777776665432 245566666666667777777777776666553 334445555544
Q ss_pred HHH
Q 006396 142 GLC 144 (647)
Q Consensus 142 ~~~ 144 (647)
++.
T Consensus 86 ~~~ 88 (91)
T 1na3_A 86 AKQ 88 (91)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.87 E-value=1.9e-05 Score=62.58 Aligned_cols=93 Identities=15% Similarity=0.055 Sum_probs=59.8
Q ss_pred CChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCCh----------hHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhc
Q 006396 42 RHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRL----------QDAILFLQETAGKEFGPSVVSLNAIMSRYCKL 111 (647)
Q Consensus 42 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (647)
+.+++|++.++.++...| .++.+|..++.++...|++ ++|+..|++++...+. +..+|..+..+|...
T Consensus 16 ~~feeA~~~~~~Ai~l~P-~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNP-LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHh
Confidence 456677777777776555 6667777777777776654 3777777777765433 455677777777665
Q ss_pred C-----------ChhhHHHHHHHHHhCCCCCCHHHHHH
Q 006396 112 G-----------FAEVAKGLFCLMLKYGLHPDAFSYNI 138 (647)
Q Consensus 112 g-----------~~~~a~~~~~~~~~~~~~~~~~~~~~ 138 (647)
| ++++|.+.|+++++. .|+...|..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~ 129 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLK 129 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHH
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHH
Confidence 4 666777777776665 444444433
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.83 E-value=5.9e-05 Score=55.81 Aligned_cols=65 Identities=17% Similarity=0.095 Sum_probs=58.0
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 480 TPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
+.+...+..+..+|...|++++|...|+++++. .| +...|..++.+|...|++++|...+++.++
T Consensus 4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 4 PEDPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456778899999999999999999999999984 44 578899999999999999999999999986
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00011 Score=55.65 Aligned_cols=68 Identities=9% Similarity=0.052 Sum_probs=62.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (647)
+...+..++..+...|++++|+..++++++.. |.+..++..++.++.+.|++++|++.+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~lg~~~~~~g~~~~A~~~~ 61 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ---------------------PQNPVGYSNKAMALIKLGEYTQAIQMC 61 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC---------------------CCCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 45678889999999999999999999999987 778999999999999999999999999
Q ss_pred HHHHhCCCC
Q 006396 632 AVMIKSGLL 640 (647)
Q Consensus 632 ~~~~~~~~~ 640 (647)
+++++.++.
T Consensus 62 ~~al~~~p~ 70 (111)
T 2l6j_A 62 QQGLRYTST 70 (111)
T ss_dssp HHHHTSCSS
T ss_pred HHHHHhCCC
Confidence 999987654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00014 Score=71.14 Aligned_cols=124 Identities=7% Similarity=-0.068 Sum_probs=84.9
Q ss_pred HHhcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh-----CC-CCCC-HHHHHH
Q 006396 458 LCKQWKLQEAVQLLEDMYVIG---VTP----DQITYNTIIRSFCKCKDLRKAFQLLNQMWL-----HN-LEPT-SATYNI 523 (647)
Q Consensus 458 ~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~-~~p~-~~~~~~ 523 (647)
+...|++++|+.++++.++.. +.+ ...+++.|..+|...|++++|..++++.++ .| -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 446778888888777766521 112 234677788888888888888888877664 12 1232 566788
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
|+..|...|++++|+.+++++++. -+.|+ ..+...+..++...|.+++|...|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888888888887741 12232 22455666777788888888888888875
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.73 E-value=5.3e-05 Score=55.99 Aligned_cols=59 Identities=27% Similarity=0.271 Sum_probs=37.1
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+..+...|++++|...++++.+.. +.+.. .+..++.++...|++++|+..|+++++..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 3445556666667777666666642 33445 66666666666777777777777766655
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00038 Score=50.12 Aligned_cols=66 Identities=12% Similarity=0.121 Sum_probs=34.3
Q ss_pred CHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+..+..++...++ .++|..+++++++.+ +.+......++..+...|++++|+..|+++++..
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45555555555543333 455555555555532 3334455555555555555555555555555544
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.68 E-value=2.2e-07 Score=86.08 Aligned_cols=449 Identities=12% Similarity=0.051 Sum_probs=233.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..++++.|.+.-+++ ..+..|..++.+.+..|+..+|++.|-++. |+..|..++....+.|++++-..
T Consensus 37 ~i~~ldRa~eyA~~~------n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~ 104 (624)
T 3lvg_A 37 HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVK 104 (624)
T ss_dssp GGCCSTTTTTSSSSC------CCCCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHH
T ss_pred hccccHHHHHHHHHh------CCccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHH
Confidence 444555554443322 456789999999999999999988774433 55578889999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcC-
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKG- 198 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 198 (647)
.+..+.+. ..++.+=+.|+-+|++.++..+-.+.+ ..|+..-...+..-+...|.++.|.-+|..+....
T Consensus 105 yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak 175 (624)
T 3lvg_A 105 YLQMARKK--ARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR 175 (624)
T ss_dssp HHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred HHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence 98877765 344555678899999998866543332 24666666777777777777777766665432211
Q ss_pred -------------------CCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHH
Q 006396 199 -------------------SDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALG 259 (647)
Q Consensus 199 -------------------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 259 (647)
-..++.||..+-.+|...+++..|.-.--.+.- .+.-...++..|-..|.+++.+.
T Consensus 176 LAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIs 250 (624)
T 3lvg_A 176 LASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELIT 250 (624)
T ss_dssp TSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTT
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHH
Confidence 012455677777777777766665544333332 22233445556666777777777
Q ss_pred HHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC-CCCC------CcccHHHHHHHHhhcCCHHHHHHHHH
Q 006396 260 LLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK-RISP------NSFAHGAILLGLCEKEMITEARMYFD 332 (647)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~a~~~~~ 332 (647)
+++.-... -......|+.|.-.|++- ++++..+.++..-.+ +++. ....|..++..|..-.+++.|....
T Consensus 251 LlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM- 327 (624)
T 3lvg_A 251 MLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM- 327 (624)
T ss_dssp THHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT-
T ss_pred HHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH-
Confidence 77665532 123455666666666654 233333333322111 1110 1122333333333333333322110
Q ss_pred HHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHH------
Q 006396 333 SLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKL------ 406 (647)
Q Consensus 333 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------ 406 (647)
... +++..-.....+...+..+.+---+.+.-.++. .+...+-++.++...=|...+.++|.+.-.
T Consensus 328 --i~h--~~~Aw~h~~Fkdii~KVaN~EiyYKAi~FYL~e----~P~lL~DLL~vL~prlDh~RvV~~~~k~~~LpLIkp 399 (624)
T 3lvg_A 328 --MNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF----KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKP 399 (624)
T ss_dssp --TSC--HHHHCCGGGGTTTGGGCSCSHHHHHHHHHHTTS----CCTTSHHHHHHHCTTCCSTTTHHHHHTTTCGGGGTG
T ss_pred --HhC--ChhhccHHHHHHHHHHcchHHHHHHHHHHHHHh----ChHHHHHHHHhccccCChHHHHHHHHhcCCchhhHH
Confidence 000 000000000001111111111111111111111 222233444444333344444444432110
Q ss_pred ----CCCCCCHHHHHHHHHHHHHcCCHHHHHH------------HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 407 ----HGLEPSAVTYTTFMNAYCEEGNIQRLLA------------LLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 407 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~------------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
..-..+...-.++-..|....|++.-.. +-+++.++ +-...-..-...|.+.+++++++.+
T Consensus 400 YL~~Vq~~N~~aVNeAln~L~IEEEDy~~LR~SId~ydNFD~i~LA~rLEkH---eL~eFRrIAA~LYkkn~rw~qsi~l 476 (624)
T 3lvg_A 400 YLRSVQNHNNKSVNESLNNLFITEEDYQALRTSIDAYDNFDNISLAQRLEKH---ELIEFRRIAAYLFKGNNRWKQSVEL 476 (624)
T ss_dssp GGTSCCCSCCHHHHHHHHHHHHHTTCCHHHHHTTSSCCCSCTTHHHHHHHTC---SSHHHHHHHHHHHHTTCHHHHHSSC
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhhhhHHHHHHHHHHhccccHHHHHHHHhhC---chHHHHHHHHHHHHhcccHHHHHHH
Confidence 0012233444555666777777665432 22233332 2222233334446667777777654
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHH
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++ ...|.-.|.....+|+.+-|.++++-.++.| +..+|.+.+..|...=+++-+.++
T Consensus 477 ~Kk---------DklykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 477 CKK---------DSLYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SST---------TCCTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHh---------cccHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 321 1223333445556777777888887777644 456677777777666666666655
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00072 Score=62.02 Aligned_cols=136 Identities=13% Similarity=0.015 Sum_probs=70.7
Q ss_pred CCCHHHHHHHHHHHH--hcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cC--C---HHHHHHHHHHHHh
Q 006396 445 GPTHVTYTVVIKGLC--KQW---KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCK---CK--D---LRKAFQLLNQMWL 511 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~--~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~--~---~~~A~~~~~~~~~ 511 (647)
+.+...|...+++.. ..+ ...+|..+|+++++.. |-....+..+..+|.. .+ . .......+.....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 445555666555532 222 3466777777777653 2333444444444431 00 0 1111111111111
Q ss_pred C-CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 512 H-NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 512 ~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
. ..+.++.++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.++++...+
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~ 340 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLR 340 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 1 113346666666655555667777777777766643 555555666666666677777777777666654
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00061 Score=53.36 Aligned_cols=84 Identities=14% Similarity=0.054 Sum_probs=56.6
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 572 (647)
.+..+.+.|.+....+ .++..+...+..++++++ +.++++.+++...+.+ .| +...+..++-++.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556666666666554 356666667777777776 5557777777777653 24 344667777777777777777
Q ss_pred HHHHHHHHHcC
Q 006396 573 MTFFCQMVEKG 583 (647)
Q Consensus 573 ~~~~~~~~~~~ 583 (647)
+++++.+++..
T Consensus 91 ~~y~~~lL~ie 101 (152)
T 1pc2_A 91 LKYVRGLLQTE 101 (152)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 77777777765
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.002 Score=49.44 Aligned_cols=104 Identities=12% Similarity=-0.012 Sum_probs=78.6
Q ss_pred CHHHHHHHHHHHhhcCCh------hhHHHHHHHHHHcCCCCCHH-HHHHHH------HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 517 TSATYNILIDGLCVNGDL------KNADCLLVSLQEHNISLTKV-AYTTII------KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~~-~~~~l~------~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|.++|-..+....+.|++ +..+++|+++... ++|+.. .|...+ ..+...+|.++|.++|+.++..+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 688888888888888888 7888888888875 666532 121111 12234589999999999998754
Q ss_pred CcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 584 FEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
+.=..+|...+..-.++|+...|++++.+++..+++|.
T Consensus 91 ---------------------KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 ---------------------KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp ---------------------TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred ---------------------HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 11288999999999999999999999999999888763
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.018 Score=52.98 Aligned_cols=144 Identities=15% Similarity=0.059 Sum_probs=98.3
Q ss_pred CCCHHHHHHHHHHH--HHcCC---HHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHh---cC--CHHHHH---HHHHHHH
Q 006396 410 EPSAVTYTTFMNAY--CEEGN---IQRLLALLQEMETKAIGPT-HVTYTVVIKGLCK---QW--KLQEAV---QLLEDMY 475 (647)
Q Consensus 410 ~~~~~~~~~l~~~~--~~~~~---~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g--~~~~a~---~~~~~~~ 475 (647)
+.+...|...+++. ...++ ..+|..+|++..+. .|+ ...+..+..++.. .+ ...... ..++...
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~ 268 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIV 268 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHH
Confidence 55666666666553 33333 57899999999886 454 4555554444431 11 111111 1222211
Q ss_pred H-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 476 V-IGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 476 ~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
. ..-+.+..++..+...+...|++++|...+++++.. .|+...|..+..++...|++++|.+.+.++.. +.|...
T Consensus 269 a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L--n~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~ 344 (372)
T 3ly7_A 269 TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL--EMSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGAN 344 (372)
T ss_dssp TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHH
T ss_pred hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcC
Confidence 1 122567788888877777789999999999999994 48888888999999999999999999999998 467777
Q ss_pred HHHHH
Q 006396 555 AYTTI 559 (647)
Q Consensus 555 ~~~~l 559 (647)
+|...
T Consensus 345 t~~~~ 349 (372)
T 3ly7_A 345 TLYWI 349 (372)
T ss_dssp HHHHH
T ss_pred hHHHH
Confidence 65443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00068 Score=49.82 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=55.8
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQE-ICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..+..+...|++++|+..++++++.. |.+.. .+..++.++...|++++|.+.++++++
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~al~~~---------------------p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 63 (99)
T 2kc7_A 5 KTIKELINQGDIENALQALEEFLQTE---------------------PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE 63 (99)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHC---------------------SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHC---------------------CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45677889999999999999999987 77788 999999999999999999999999998
Q ss_pred CCCC
Q 006396 637 SGLL 640 (647)
Q Consensus 637 ~~~~ 640 (647)
.++.
T Consensus 64 ~~p~ 67 (99)
T 2kc7_A 64 LNPD 67 (99)
T ss_dssp HCTT
T ss_pred cCCC
Confidence 7654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00089 Score=64.31 Aligned_cols=94 Identities=5% Similarity=-0.192 Sum_probs=68.2
Q ss_pred hcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhC
Q 006396 530 VNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSN 602 (647)
Q Consensus 530 ~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (647)
..|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++.. ......
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~-------------~~~lG~ 376 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPY-------------SKHYPV 376 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------------HHHSCS
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH-------------HHHcCC
Confidence 457888888888887752 12232 2378889999999999999999999987521 000000
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 603 GFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.-|.....++.|+.+|...|++++|..+++++++
T Consensus 377 ~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 377 YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 0122256789999999999999999999999874
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00066 Score=50.38 Aligned_cols=76 Identities=17% Similarity=0.078 Sum_probs=59.4
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 551 LTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 551 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
.+..-+..++..+...|+++.|..+++.+++..-... .+-.+...++..++.++.+.|++++|...
T Consensus 3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~--------------~~~~~~~~i~~~L~~~~~~~g~~~~A~~~ 68 (104)
T 2v5f_A 3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGE--------------ISTIDKVSVLDYLSYAVYQQGDLDKALLL 68 (104)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC--------------CCSSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccC--------------CCcccHHHHHHHHHHHHHHccCHHHHHHH
Confidence 3556677889999999999999999999886420000 00135578999999999999999999999
Q ss_pred HHHHHhCCCC
Q 006396 631 AAVMIKSGLL 640 (647)
Q Consensus 631 ~~~~~~~~~~ 640 (647)
++++++..|.
T Consensus 69 ~~~al~l~P~ 78 (104)
T 2v5f_A 69 TKKLLELDPE 78 (104)
T ss_dssp HHHHHHHCTT
T ss_pred HHHHHhcCCC
Confidence 9999986654
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.16 E-value=0.0013 Score=57.64 Aligned_cols=88 Identities=15% Similarity=0.080 Sum_probs=73.5
Q ss_pred hhhHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCC
Q 006396 534 LKNADCLLVSLQEHNISLT---KVAYTTIIKAHCAE-----GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFP 605 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (647)
...|...++++++ +.|+ ...|..++..|... |+.++|.+.|+++++.+ |
T Consensus 179 l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln---------------------P 235 (301)
T 3u64_A 179 VHAAVMMLERACD--LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC---------------------S 235 (301)
T ss_dssp HHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC---------------------C
T ss_pred HHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC---------------------C
Confidence 5678888888888 4565 55788888888884 99999999999999987 4
Q ss_pred C-CHHHHHHHHHHHHcC-CCHHHHHHHHHHHHhCCCC--CCCC
Q 006396 606 P-DQEICEVMLIAFHQG-GDLGSVFELAAVMIKSGLL--PDKF 644 (647)
Q Consensus 606 ~-~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~--~~~~ 644 (647)
. +..++..+++.+++. |+.++|.+.++++++.++. |+..
T Consensus 236 ~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~ 278 (301)
T 3u64_A 236 AHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNK 278 (301)
T ss_dssp TTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCH
T ss_pred CCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChh
Confidence 3 488999999999885 9999999999999998887 7654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0031 Score=60.69 Aligned_cols=99 Identities=8% Similarity=0.018 Sum_probs=72.4
Q ss_pred HHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 525 IDGLCVNGDLKNADCLLVSLQEH---NISLT----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 525 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
+..+...|++++|+.+++++++. -+.|+ ..+++.++.+|...|++++|+.+++++++.. .
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~-------------~ 360 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPY-------------R 360 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-------------H
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhH-------------H
Confidence 34455778999999999998853 12233 2378889999999999999999999987521 0
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
......-|.-...++.|+..|...|++++|..+++++++
T Consensus 361 ~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 361 IFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 000001122256788999999999999999999999874
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0051 Score=44.14 Aligned_cols=67 Identities=16% Similarity=0.152 Sum_probs=57.4
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcC
Q 006396 480 TPDQITYNTIIRSFCKCKD---LRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHN 548 (647)
Q Consensus 480 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 548 (647)
+.++..+..+..++...++ .++|..++++.++ ..| ++.....++..+...|++++|+..|+++++..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 5677888888888865554 7999999999999 456 58889999999999999999999999999854
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=97.08 E-value=1.2e-06 Score=81.21 Aligned_cols=233 Identities=9% Similarity=0.047 Sum_probs=141.7
Q ss_pred CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHH
Q 006396 97 SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAK 176 (647)
Q Consensus 97 ~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 176 (647)
.+.+|..++.+..+.|...+|+.-|=+ ..|+..|..++.+..+.|.+++-...+.-..+. ..++..=+.|+-
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsyIk------A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ 124 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIF 124 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSSCC------CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHH
T ss_pred CccHHHHHHHHHHccCchHHHHHHHHh------CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHH
Confidence 455799999999999999888766532 234556888999999999999999988877665 334455568999
Q ss_pred HHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhH
Q 006396 177 GFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDE 256 (647)
Q Consensus 177 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 256 (647)
+|++.++..+..+++. .|+..-...+..-|...|.++.|.-+|..+ .-|..|..++...|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~i---------sN~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGS---------CCCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhC---------ccHHHHHHHHHHHHHHHH
Confidence 9999998776544432 466667777888888888888777666533 223444445555565555
Q ss_pred HHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 006396 257 ALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIM 336 (647)
Q Consensus 257 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 336 (647)
|.+.-++ ..++.||-.+..+|...+.+.-|.-.--.++- .+..+..++..|-..|.+++-+.+++....
T Consensus 189 AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEaglg 257 (624)
T 3lvg_A 189 AVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAALG 257 (624)
T ss_dssp STTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTT
T ss_pred HHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhC
Confidence 5443222 12455666666666666665544332222221 111222334445555666665555555543
Q ss_pred cCCCCcHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 337 SNCIQDVVLYNIMIDGYVKLGNIGEAVQLY 366 (647)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 366 (647)
.. ......|+-|.-.|++- .+++..+.+
T Consensus 258 lE-rAHmGmFTELaILYsKY-~PeKlmEHl 285 (624)
T 3lvg_A 258 LE-RAHMGMFTELAILYSKF-KPQKMREHL 285 (624)
T ss_dssp ST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred CC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence 22 23455555555555544 344444443
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0035 Score=60.24 Aligned_cols=87 Identities=5% Similarity=-0.077 Sum_probs=63.3
Q ss_pred hcCCHHHHHHHHHHHHh---CCCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCC---C-HHHHHHHH
Q 006396 495 KCKDLRKAFQLLNQMWL---HNLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISL---T-KVAYTTII 560 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~---~-~~~~~~l~ 560 (647)
..|++++|+.++++.++ .-+.|+ ..+++.|+.+|...|++++|+.+++++++. -+.| + ..+++.++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 34677888887777665 112222 567788888888889999998888887741 1222 2 23788899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~ 581 (647)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998875
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0084 Score=46.97 Aligned_cols=88 Identities=15% Similarity=0.096 Sum_probs=71.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCChhhH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCK---DLRKAFQLLNQMWLHNLEP--TSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A 537 (647)
....+.+-|.+..+.+ +++..+...+..++.+.+ +++++..+++...+.+ .| +...+..|.-+|.+.|++++|
T Consensus 13 ~l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A 90 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 90 (152)
T ss_dssp HHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHH
T ss_pred HHHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHH
Confidence 4556677777777766 578888888999999988 6779999999999853 35 467778888999999999999
Q ss_pred HHHHHHHHHcCCCCCHH
Q 006396 538 DCLLVSLQEHNISLTKV 554 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~ 554 (647)
.+.++++++ +.|+..
T Consensus 91 ~~y~~~lL~--ieP~n~ 105 (152)
T 1pc2_A 91 LKYVRGLLQ--TEPQNN 105 (152)
T ss_dssp HHHHHHHHH--HCTTCH
T ss_pred HHHHHHHHh--cCCCCH
Confidence 999999999 456543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0089 Score=57.52 Aligned_cols=92 Identities=13% Similarity=0.036 Sum_probs=70.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC---CCCCC----HHHHHHHHHHHhhcCChhhHHHHHHHHHHc---CCCCC----HHH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLH---NLEPT----SATYNILIDGLCVNGDLKNADCLLVSLQEH---NISLT----KVA 555 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~----~~~ 555 (647)
+..+...|++++|+.++++.++. -+.|+ ..+++.++.+|...|++++|+.+++++++. -+.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678999999999888862 12232 567888999999999999999999988741 12232 337
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 556 YTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 556 ~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
++.++..|...|++++|+.+++++++
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88999999999999999999999875
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.012 Score=43.46 Aligned_cols=65 Identities=12% Similarity=0.037 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHN------ISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.-...++..+...|+++.|..+++.+.+.. -.+...++..++.++.+.|++++|+.+++++++..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 334456666666777777777776666421 01234466677777777777777777777777655
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0076 Score=45.26 Aligned_cols=86 Identities=13% Similarity=0.002 Sum_probs=45.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhh---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKN---ADCLLVSLQEHNISL--TKVAYTTIIKAHCAEGDVH 570 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~ 570 (647)
...+..+.+.|.+....| .|+..+--.+.+++.++.+... ++.+++.+...+ .| .......++-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 344445555555544433 2455555555566666555444 555555555432 12 2224455556666666666
Q ss_pred HHHHHHHHHHHcC
Q 006396 571 KAMTFFCQMVEKG 583 (647)
Q Consensus 571 ~A~~~~~~~~~~~ 583 (647)
+|+++++.+++..
T Consensus 92 ~A~~~~~~lL~~e 104 (126)
T 1nzn_A 92 KALKYVRGLLQTE 104 (126)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 6666666666554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0045 Score=54.28 Aligned_cols=98 Identities=18% Similarity=0.123 Sum_probs=63.7
Q ss_pred ChhHHHHHHHHhhcCCCCc-CHHhHHHHHHHHHh-----cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHH
Q 006396 78 RLQDAILFLQETAGKEFGP-SVVSLNAIMSRYCK-----LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIA-GSME 150 (647)
Q Consensus 78 ~~~~a~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~ 150 (647)
...+|..+++++++..+.- +...|..++..|.+ .|+.++|.+.|+++++.+...+..++......+++. |+.+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3466777777777654321 24567777777777 378888888888888764212366666777777764 7788
Q ss_pred HHHHHHHHHhhCCCC--CChhhHHHHH
Q 006396 151 EALEFTNDMGRHGVE--PDAITYSILA 175 (647)
Q Consensus 151 ~a~~~~~~~~~~~~~--~~~~~~~~l~ 175 (647)
++.+.+++.....+. |+....+.+.
T Consensus 258 ~a~~~L~kAL~a~p~~~P~~~lan~~~ 284 (301)
T 3u64_A 258 GFDEALDRALAIDPESVPHNKLLVILS 284 (301)
T ss_dssp HHHHHHHHHHHCCGGGCSSCHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCChhHHHHHH
Confidence 888888888776544 5544444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.064 Score=57.26 Aligned_cols=168 Identities=11% Similarity=0.039 Sum_probs=78.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 417 TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKC 496 (647)
Q Consensus 417 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 496 (647)
..++..+.+.|.++.|..+.++-. .-.......|++++|.++.+. -.+...|..+...+.+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~A~~~~~~------~~~~~~W~~la~~al~~ 694 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTLARDLLTD------ESAEMKWRALGDASLQR 694 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHHHHHHHTT------CCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHHHHHHHHh------hCcHhHHHHHHHHHHHc
Confidence 444555555666666554442110 001223445666666665432 23556666666667777
Q ss_pred CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 497 KDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFF 576 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 576 (647)
++++.|.++|.++.. |..+...|...|+.+...++.+.+...|. +.....++...|++++|++++
T Consensus 695 ~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~------~~~A~~~~~~~g~~~~a~~~~ 759 (814)
T 3mkq_A 695 FNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK------FNLAFNAYWIAGDIQGAKDLL 759 (814)
T ss_dssp TCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHH
T ss_pred CCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc------hHHHHHHHHHcCCHHHHHHHH
Confidence 777777776666532 11233333334555544444444443321 122233344455555555555
Q ss_pred HHHHHcCCcccchhhhhHHHHhhhhCCCCC--CHHHHHHHHHHHHcCCCHHHH
Q 006396 577 CQMVEKGFEISIRDYTKSFFCMMLSNGFPP--DQEICEVMLIAFHQGGDLGSV 627 (647)
Q Consensus 577 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A 627 (647)
.++-+.. ....+.+.++.+. -......+...+...|+.+.|
T Consensus 760 ~~~~~~~----------~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 760 IKSQRFS----------EAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp HHTTCHH----------HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred HHcCChH----------HHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 4432211 1111122222122 125666666777777775444
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.017 Score=44.42 Aligned_cols=105 Identities=11% Similarity=0.011 Sum_probs=65.6
Q ss_pred CCCcccHHHHHHHHHhcCCh------hHHHHHHHHhhcCCCCcCHH-hHHHHHH------HHHhcCChhhHHHHHHHHHh
Q 006396 60 PRNVYTNSIVIDGLCQQSRL------QDAILFLQETAGKEFGPSVV-SLNAIMS------RYCKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 60 ~~~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~~~~-~~~~~~~------~~~~~g~~~~a~~~~~~~~~ 126 (647)
|.|+++|-..+...-+.|++ ++.+++|+++...- +|+.. .|...+. .+...+++++|.++|+.++.
T Consensus 10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~-Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~ 88 (161)
T 4h7y_A 10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEAL-PPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA 88 (161)
T ss_dssp CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHS-CGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcC-CccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 36677777777777777877 77778888776542 23211 1111111 11234677788888877765
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCC
Q 006396 127 YGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEP 166 (647)
Q Consensus 127 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~ 166 (647)
.+ +.-+..|......-.++|+...|.+++......+.+|
T Consensus 89 ~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 89 NC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred Hh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 43 3336666666666677788888888877777765444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.086 Score=42.47 Aligned_cols=103 Identities=13% Similarity=0.128 Sum_probs=78.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLK 535 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 535 (647)
......|+++.|.++.+.+ .+...|..|.......|+++-|+++|.+... +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3446789999999987765 5788999999999999999999999998643 224445566778888
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
.-.++-+.....| -++....++...|+++++++++.+.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 8777776666654 2445556677889999999998654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.25 E-value=0.13 Score=54.80 Aligned_cols=154 Identities=13% Similarity=0.107 Sum_probs=100.6
Q ss_pred hHHHhcCChhhHHH-HHHHHH-hCCCCcCHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhH
Q 006396 4 FVYSRTGMVHDAVF-VIAKMK-ELDLKVSIQTYNSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQD 81 (647)
Q Consensus 4 ~~~~~~g~~~~A~~-~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 81 (647)
......|++++|.. ++..+. .. ........+.+.|.++.|.+..+... .-.......|++++
T Consensus 607 ~~~~~~~~~~~a~~~~l~~i~~~~----~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPNVEGKD----SLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGGCCCHH----HHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred hHHHHhCCHHHHHHHHHhcCCchH----HHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 34556788998876 542211 11 11223334447888888887653211 12345678899999
Q ss_pred HHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 006396 82 AILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGR 161 (647)
Q Consensus 82 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 161 (647)
|.++.+.+ .+...|..++..+.+.|+++.|.+.|.++.. |..+...+...++.+...++.+....
T Consensus 671 A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 671 ARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 99886543 3677899999999999999999999998753 44555666667887776666666554
Q ss_pred CCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 162 HGVEPDAITYSILAKGFHLLSQISGAWKVIQKL 194 (647)
Q Consensus 162 ~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 194 (647)
.| -++....++.+.|++++|.+++.++
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 43 2344445566677777777766554
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.078 Score=39.85 Aligned_cols=91 Identities=10% Similarity=0.000 Sum_probs=68.7
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHhCCCCC--CHHHHHHHHHHHhhcCC
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRK---AFQLLNQMWLHNLEP--TSATYNILIDGLCVNGD 533 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~ 533 (647)
........+.+-+......| .++..+-..+..++.+..+... ++.+++.+.+.+ .| .......|.-++.+.|+
T Consensus 12 ~~~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~ 89 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKE 89 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhh
Confidence 33344556666666666656 4788887788889988887665 999999988753 34 35666778889999999
Q ss_pred hhhHHHHHHHHHHcCCCCCH
Q 006396 534 LKNADCLLVSLQEHNISLTK 553 (647)
Q Consensus 534 ~~~A~~~~~~~~~~~~~~~~ 553 (647)
+++|.+.++.+++. .|+.
T Consensus 90 Y~~A~~~~~~lL~~--eP~n 107 (126)
T 1nzn_A 90 YEKALKYVRGLLQT--EPQN 107 (126)
T ss_dssp HHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHHHHHHHh--CCCC
Confidence 99999999999994 5643
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.05 E-value=0.31 Score=39.29 Aligned_cols=99 Identities=11% Similarity=0.059 Sum_probs=50.7
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
.+|+++.|.++.+.+ .+...|..++...+.+|+++-|...|.+.-. +..+.-.|.-.|+.+.-..
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 556666666655543 3444566666666666666666666665432 2333333444555555554
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
+-+.....| -++.....+...|+++++.++|.+.
T Consensus 82 la~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 82 MQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 444444332 1233333344456666666555433
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.38 Score=36.22 Aligned_cols=82 Identities=17% Similarity=0.228 Sum_probs=46.4
Q ss_pred cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 496 CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTF 575 (647)
Q Consensus 496 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 575 (647)
+|++......+-.+ ..+...++.-++.+..+|+-++-.+++..+... .+|++.....++.+|.+.|+..+|.++
T Consensus 74 C~NlKrVi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eL 147 (172)
T 1wy6_A 74 CQNLKSVVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTL 147 (172)
T ss_dssp CSCTHHHHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hhcHHHHHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHH
Confidence 44444444444332 223444555556666666666666666664432 355666666666666666666666666
Q ss_pred HHHHHHcC
Q 006396 576 FCQMVEKG 583 (647)
Q Consensus 576 ~~~~~~~~ 583 (647)
+.++.+.|
T Consensus 148 l~~AC~kG 155 (172)
T 1wy6_A 148 LIEACKKG 155 (172)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhh
Confidence 66666665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.54 Score=36.00 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=32.1
Q ss_pred CCCHHHHHHHHHHHhhcCCh---hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGDL---KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|+..+--.+.+++.++.+. .+++.+++.+...+..-.......++-++.+.|++++|+++.+.+++..
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 34444444445555554432 2344555555543211122244445555555555555555555555543
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.65 Score=34.99 Aligned_cols=141 Identities=14% Similarity=0.128 Sum_probs=98.6
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
+.-.|..++..++..+.... .+..-+|-++.-....-+-+-..++++.+-+. -| ....|+....
T Consensus 17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------is~C~NlKrV 80 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------LDKCQNLKSV 80 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC----------GGGCSCTHHH
T ss_pred HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC----------cHhhhcHHHH
Confidence 34467788888888777653 35555666666566666666666666655432 11 1234555555
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
...+-.+ ..+.......+......|..+.-.+++..++.. .+|++.....+..+|.+.|+..+|.+++.++-+.
T Consensus 81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k 154 (172)
T 1wy6_A 81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 154 (172)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 5544332 335556677778888999999999999997553 5788999999999999999999999999999998
Q ss_pred CCC
Q 006396 548 NIS 550 (647)
Q Consensus 548 ~~~ 550 (647)
|++
T Consensus 155 G~k 157 (172)
T 1wy6_A 155 GEK 157 (172)
T ss_dssp TCH
T ss_pred hhH
Confidence 864
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=95.09 E-value=0.18 Score=38.03 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.+.+..++-++.+.|++++|++..+.+++
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 34444444444444444444444444444
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.56 E-value=3.5 Score=39.71 Aligned_cols=96 Identities=13% Similarity=0.032 Sum_probs=65.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh----CCCCCC--HH
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGV-TPD----QITYNTIIRSFCKCKDLRKAFQLLNQMWL----HNLEPT--SA 519 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~--~~ 519 (647)
...|...+...|++.+|..++..+...-. ..+ ...+...++.|...+|+.+|..++.++.. ....|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 34567777888888888888888764211 122 23566677788888999999888887642 212222 34
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
.+...+..+...+++.+|.+.|.++.+
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 556677777888889888888877764
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.1 Score=41.22 Aligned_cols=124 Identities=9% Similarity=0.004 Sum_probs=71.8
Q ss_pred CCCCCHHHH--HHHHHHHhhcCChhhHHHHHHHHHHc-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 513 NLEPTSATY--NILIDGLCVNGDLKNADCLLVSLQEH-NISLT-------KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 513 ~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
|+.|....| ..-++.+...|.++.|+-+...+... +..|+ ..++..++.++...|++..|...|+++++.
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444543333 33456667788888888877775531 11222 126678889999999999999999998653
Q ss_pred CC--cccchhhhhH--HHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 583 GF--EISIRDYTKS--FFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 583 ~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
.- .-........ --........+.+.+.-..++.+|.+.|++++|+.+++.+..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~ 150 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPS 150 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCG
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCc
Confidence 21 1000000000 000000112345678888899999999999999999987653
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.43 E-value=0.27 Score=50.37 Aligned_cols=54 Identities=11% Similarity=-0.057 Sum_probs=36.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
..|...|+++-|+.+.++++... |.+..+|..|+.+|...|+++.|+-.+..++
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~a---------------------PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELA---------------------LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC---------------------SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcC---------------------chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 34555677777777777777665 5667777777777777777777776666653
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=94.35 E-value=4.9 Score=40.48 Aligned_cols=117 Identities=11% Similarity=0.035 Sum_probs=60.5
Q ss_pred CCHHHHHHHHHHHHhC-CCCCC--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 006396 497 KDLRKAFQLLNQMWLH-NLEPT--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAM 573 (647)
Q Consensus 497 ~~~~~A~~~~~~~~~~-~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 573 (647)
.+.+.|...+...... .+.+. ...+..++......+...++...+.+.... .++.......+....+.|+++.|.
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~ 305 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLN 305 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHH
Confidence 3667777777666542 22221 112222232333334344555555554432 233333444444445567777777
Q ss_pred HHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 574 TFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
..|+.+-... ........-+++++.+.|+.++|..+++.+.+
T Consensus 306 ~~~~~l~~~~---------------------~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 306 TWLARLPMEA---------------------KEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHSCTTG---------------------GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHccccc---------------------cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 7776664321 12344455566677777777777777766543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.11 E-value=0.26 Score=50.51 Aligned_cols=53 Identities=17% Similarity=0.097 Sum_probs=31.2
Q ss_pred HHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 526 DGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 526 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
+.|...|+++.|+.+.+++... .|.+..+|..|+.+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3344556666666666666653 2334556666666666666666666665554
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=0.29 Score=46.28 Aligned_cols=69 Identities=13% Similarity=0.111 Sum_probs=59.5
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVM 634 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 634 (647)
+...++.++...|++++|+..++.++... |-+...|..++.+|.+.|+..+|++.|+++
T Consensus 173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~---------------------P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~ 231 (388)
T 2ff4_A 173 AHTAKAEAEIACGRASAVIAELEALTFEH---------------------PYREPLWTQLITAYYLSDRQSDALGAYRRV 231 (388)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC---------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45667788899999999999999999887 788999999999999999999999999886
Q ss_pred H-----hCCCCCCCC
Q 006396 635 I-----KSGLLPDKF 644 (647)
Q Consensus 635 ~-----~~~~~~~~~ 644 (647)
. +.|+.|...
T Consensus 232 r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 232 KTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHSCCCCHH
T ss_pred HHHHHHHhCCCCCHH
Confidence 5 358877653
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.83 E-value=1.7 Score=32.87 Aligned_cols=69 Identities=13% Similarity=0.064 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHhhcCCh---hhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 515 EPTSATYNILIDGLCVNGDL---KNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.|++.+--.+.+++.++.+. .+++.+++.+.+.+..-....+..++-++.+.|++++|+++.+.+++..
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 45555555666666665543 3466666666654311123356666667777777777777777777654
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.83 E-value=1.8 Score=34.28 Aligned_cols=124 Identities=8% Similarity=-0.014 Sum_probs=63.1
Q ss_pred CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHhC
Q 006396 443 AIGPTHVTY--TVVIKGLCKQWKLQEAVQLLEDMYVIG-VTPDQ-------ITYNTIIRSFCKCKDLRKAFQLLNQMWLH 512 (647)
Q Consensus 443 ~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 512 (647)
|..|....| ..-++.+...|.++.|+-+.+.+.... ..|+. .++..+..++...|++.+|...|++++..
T Consensus 13 ~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 13 GLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp --------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 444444433 333555667778888777766655421 12331 24556667777788888888888876641
Q ss_pred -CCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 513 -NLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQM 579 (647)
Q Consensus 513 -~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 579 (647)
..-+ +......+. ....... ......+...-..+..+|.+.|++++|+.+++.+
T Consensus 93 ~k~l~k~~s~~~~~~----~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTG----NSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCcccccc----ccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 1111 111111110 0000000 0112334456677889999999999999998865
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.53 E-value=10 Score=36.48 Aligned_cols=96 Identities=8% Similarity=0.064 Sum_probs=72.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh--CCCCCC---HHHHHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCC--HH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWL--HNLEPT---SATYNILIDGLCVNGDLKNADCLLVSLQE----HNISLT--KV 554 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~--~~ 554 (647)
...|...|...|++.+|..++..+.. .+..+. ...+..-++.|...+++..|..+++++.. ...+|+ ..
T Consensus 140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~ 219 (445)
T 4b4t_P 140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE 219 (445)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence 45678889999999999999999875 333222 45677788999999999999999998752 211222 12
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
.+...+..+...+++.+|...|.++..
T Consensus 220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 220 YYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 456777888889999999988888865
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.40 E-value=3.6 Score=45.45 Aligned_cols=86 Identities=13% Similarity=0.181 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhC-CCCC-C--HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHH
Q 006396 484 ITYNTIIRSFCKCKDLRKAFQLLNQMWLH-NLEP-T--SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTI 559 (647)
Q Consensus 484 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p-~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l 559 (647)
.-|..++..+.+.+.++.+.++...+++. +..+ + ...|..++..+...|++++|...+..+.... --...+..+
T Consensus 900 ~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~--~r~~cLr~L 977 (1139)
T 4fhn_B 900 CYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTP--LKKSCLLDF 977 (1139)
T ss_dssp HHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSS--SCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHH--HHHHHHHHH
Confidence 34667778888888888888888887763 1111 1 2367888899999999999999888887643 335567777
Q ss_pred HHHHHhcCCHHH
Q 006396 560 IKAHCAEGDVHK 571 (647)
Q Consensus 560 ~~~~~~~g~~~~ 571 (647)
+..++..|..+.
T Consensus 978 V~~lce~~~~~~ 989 (1139)
T 4fhn_B 978 VNQLTKQGKINQ 989 (1139)
T ss_dssp HHHHHHHCCHHH
T ss_pred HHHHHhCCChhh
Confidence 777777766544
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=91.07 E-value=4.2 Score=44.94 Aligned_cols=52 Identities=12% Similarity=0.009 Sum_probs=32.0
Q ss_pred HHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHH
Q 006396 68 IVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLM 124 (647)
Q Consensus 68 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~ 124 (647)
.++..+...|.++-+.++..... .++..-..++.++...|++++|.+.|+++
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 45555666677766665544332 23444456666777777777777777665
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.05 E-value=4.2 Score=31.17 Aligned_cols=74 Identities=15% Similarity=0.079 Sum_probs=57.0
Q ss_pred CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 479 VTPDQITYNTIIRSFCKCKD---LRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
-.|+..+--.+..++.++.+ ..+++.+++.+...+..-.......|.-++.+.|++++|.+..+.+++ ..|+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n~ 111 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 111 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCCH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCcH
Confidence 35777777777888887765 557899999988843222466677888899999999999999999999 467544
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=90.92 E-value=10 Score=35.45 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=14.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTI 404 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~ 404 (647)
....+...|.+.|+.++...++...
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~ 45 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVT 45 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445555666666666666555544
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.85 E-value=18 Score=38.15 Aligned_cols=257 Identities=11% Similarity=0.017 Sum_probs=125.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCH--hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--C-----CCcccHHHHHHH
Q 006396 247 SMCKSGRIDEALGLLYEMEAVGLKPDL--VTYSILIRGLCKQDKVHKAIQLYNEMCSKRI--S-----PNSFAHGAILLG 317 (647)
Q Consensus 247 ~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~-----~~~~~~~~l~~~ 317 (647)
+....|+.++++.+++.....+-..+. ..-..+.-+....|..+++..++.......- . +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 455677888887777765542101122 2222333344555655567777766654311 0 001111222222
Q ss_pred H--hhcCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHH--HHHHHhc
Q 006396 318 L--CEKEMITEARMYFDSLIMSNCIQDVV--LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSL--IYGFCKN 391 (647)
Q Consensus 318 ~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l--~~~~~~~ 391 (647)
+ .-.++ +++.+.+..+..... .... .--++...+.-.|+.+....++..+.+.. +..+...+ .-++...
T Consensus 463 la~~GS~~-eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~ 537 (963)
T 4ady_A 463 LAAMGSAN-IEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINY 537 (963)
T ss_dssp HHSTTCCC-HHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCC-HHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhC
Confidence 2 22333 344555555544321 1111 11123334456677777777777666531 22222223 3344467
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 006396 392 GKVADARRLLDTIKLHGLEPSAVTY--TTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 469 (647)
|+.+.+..+.+.+.... .|....- .++.-+|+..|+......++..+.+.. ..+......+.-++...|+.+.+.+
T Consensus 538 g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~r 615 (963)
T 4ady_A 538 GRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPR 615 (963)
T ss_dssp TCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHH
T ss_pred CChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHH
Confidence 88888888888777631 2322222 233456677888877777888877642 1222222223333444566665666
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHh
Q 006396 470 LLEDMYVIGVTPDQITYNTIIRSFCKCKDL-RKAFQLLNQMWL 511 (647)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~ 511 (647)
+++.+.+.+ .|....-..+.-+....|+. .++...+..+..
T Consensus 616 lv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 616 IVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 665554432 33333222222333333332 567777777764
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=90.52 E-value=16 Score=36.85 Aligned_cols=165 Identities=7% Similarity=-0.008 Sum_probs=98.5
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhH
Q 006396 462 WKLQEAVQLLEDMYVIGVTPDQITY----NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNA 537 (647)
Q Consensus 462 g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 537 (647)
.+.+.|...+....+.. ..+.... ..+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHH
Confidence 37889999998887543 2333322 22222333445345566666665542 23433344444445567999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCC--C-----CC---
Q 006396 538 DCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGF--P-----PD--- 607 (647)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~--- 607 (647)
...|..|.... .........+++++...|+.++|..+|+.+... .+|+..+.......+. + +.
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~------~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~ 377 (618)
T 1qsa_A 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ------RGFYPMVAAQRIGEEYELKIDKAPQNVDS 377 (618)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS------CSHHHHHHHHHTTCCCCCCCCCCCSCCCC
T ss_pred HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC------CChHHHHHHHHcCCCCCCCCCCCChhHHh
Confidence 99998886531 223445667788888999999999999998752 2455433332222221 1 10
Q ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 608 ---QEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 608 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
...-...+..+...|....|...+..+.+
T Consensus 378 ~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~ 409 (618)
T 1qsa_A 378 ALTQGPEMARVRELMYWNLDNTARSEWANLVK 409 (618)
T ss_dssp HHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred hhccChHHHHHHHHHHCCChhhHHHHHHHHHh
Confidence 01123445678888999999888777665
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=5.8 Score=37.36 Aligned_cols=60 Identities=12% Similarity=0.065 Sum_probs=46.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVE 581 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 581 (647)
...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|++.|+++.+
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3456677778888888888888887753 55677888888888888888888888887754
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=89.98 E-value=22 Score=37.62 Aligned_cols=258 Identities=10% Similarity=0.050 Sum_probs=138.2
Q ss_pred HHHhhcCCHHHHHHHHHHHHHcCCCCcHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------CCCccchHHHHH
Q 006396 316 LGLCEKEMITEARMYFDSLIMSNCIQDVV--LYNIMIDGYVKLGNIGEAVQLYRQLIEKRI-------SPSIVTFNSLIY 386 (647)
Q Consensus 316 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~l~~ 386 (647)
.+.+..++.+++..+++.....+...+.. .-..+.-.....|..+++..++...+...- .+....-..+.-
T Consensus 382 LGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGL 461 (963)
T 4ady_A 382 LGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGI 461 (963)
T ss_dssp HHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHH
T ss_pred hhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHH
Confidence 34556777777877776655421112222 222333344556665677777777665311 001111122222
Q ss_pred HH--HhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHH--HHHh
Q 006396 387 GF--CKNGKVADARRLLDTIKLHGLEPSAV--TYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIK--GLCK 460 (647)
Q Consensus 387 ~~--~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~ 460 (647)
+. .-.++ +++...+..+.... .+... .-.++...+...|+.+....++..+.+.. +......+.. ++..
T Consensus 462 Gla~~GS~~-eev~e~L~~~L~dd-~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~ 536 (963)
T 4ady_A 462 GLAAMGSAN-IEVYEALKEVLYND-SATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALIN 536 (963)
T ss_dssp HHHSTTCCC-HHHHHHHHHHHHTC-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHT
T ss_pred HHHhcCCCC-HHHHHHHHHHHhcC-CHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhh
Confidence 22 33344 34555555555431 11111 12233344556778887888888776642 3333333333 3446
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHH
Q 006396 461 QWKLQEAVQLLEDMYVIGVTPDQIT--YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 461 ~g~~~~a~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
.|+.+.+..+++.+.... .|.... ...+.-+|+..|+.....+++..+... ...+..-...+.-++...|+.+.+.
T Consensus 537 ~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d-~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 537 YGRQELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD-SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp TTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred CCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC-CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 788888888888877631 222221 123455678899988888899988863 2233444444445555677877788
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCAEGDV-HKAMTFFCQMVE 581 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~ 581 (647)
+++..+.+.+ .|....-..++-+....|.. .++++.+..+..
T Consensus 615 rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 615 RIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp HHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 8877666543 33333223333344444444 578888888864
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=89.09 E-value=2.4 Score=30.00 Aligned_cols=50 Identities=14% Similarity=0.111 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
|.=+..+-++.+...++-|++.+..+.+++|.+.+++..|.++++.+..+
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44455555666655556666666666666666666666666666666543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.83 E-value=13 Score=33.61 Aligned_cols=80 Identities=6% Similarity=0.006 Sum_probs=46.5
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHH-HHHHHHHcCCCHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICE-VMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~ 630 (647)
++.....++..|.+.|++.+|...|= .+-.++...+..++.+.....+ +.+...|. ..+--|.-.|+...|..+
T Consensus 135 dp~LH~~ig~~~~~e~~~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRaVL~yL~l~n~~~A~~~ 209 (336)
T 3lpz_A 135 DPELHHVVGTLYVEEGEFEAAEKHLV----LGTKESPEVLARMEYEWYKQDE-SHTAPLYCARAVLPYLLVANVRAANTA 209 (336)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CHHHHHHHHHHHHccCCHHHHHHHHH----hcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 45566666777777777777766652 2323334455555665555544 44444433 233445566788889887
Q ss_pred HHHHHh
Q 006396 631 AAVMIK 636 (647)
Q Consensus 631 ~~~~~~ 636 (647)
+....+
T Consensus 210 ~~~f~~ 215 (336)
T 3lpz_A 210 YRIFTS 215 (336)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.74 E-value=5.8 Score=28.13 Aligned_cols=62 Identities=15% Similarity=0.225 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILI 525 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~ 525 (647)
+.=+..+-+..+....+-|++.+..+.+.+|.+.+|+..|.++++-+... ..+...+|..++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 34455555666666666777777777777777777777777777776652 122234454444
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.34 E-value=6.1 Score=32.47 Aligned_cols=53 Identities=9% Similarity=0.036 Sum_probs=39.4
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++...++..+|.-|...|+-.... .|...+..+...|++++|..+|+..++.+
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~ 145 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENN 145 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444667888888888777655544 66777788888888888888888887766
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=85.74 E-value=23 Score=33.12 Aligned_cols=167 Identities=12% Similarity=0.021 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC---CccchHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH-
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKR-ISP---SIVTFNSLIYGFCKN-GKVADARRLLDTIKLHGLEPSAVTY- 416 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~---~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~- 416 (647)
......+...|.+.|+.++..+++.....-= .-| .......++..+... +..+.-.++.....+.. ..+..+|
T Consensus 19 e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a-~~~~r~fl 97 (394)
T 3txn_A 19 EQGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWA-KQEKRTFL 97 (394)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHH-HHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 4567788999999999999999988764320 001 122345666666553 33344444444433311 0111122
Q ss_pred -----HHHHHHHHHcCCHHHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHH
Q 006396 417 -----TTFMNAYCEEGNIQRLLALLQEMETK--AIGPT---HVTYTVVIKGLCKQWKLQEAVQLLEDMYVI--GVTPDQI 484 (647)
Q Consensus 417 -----~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~ 484 (647)
..++..|...|++.+|..++..+.+. ..... ...+..-++.|...++..++...+...... .+.+++.
T Consensus 98 r~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~ 177 (394)
T 3txn_A 98 RQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPK 177 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHH
Confidence 25667777888888887777776652 11111 123444556667777777777777766542 2223333
Q ss_pred HHHH----HHHHHH-hcCCHHHHHHHHHHHH
Q 006396 485 TYNT----IIRSFC-KCKDLRKAFQLLNQMW 510 (647)
Q Consensus 485 ~~~~----l~~~~~-~~~~~~~A~~~~~~~~ 510 (647)
.... -...+. ..+++..|...|-+..
T Consensus 178 i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 178 VQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 3211 122344 5777777777776654
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=85.57 E-value=17 Score=31.51 Aligned_cols=122 Identities=16% Similarity=0.152 Sum_probs=73.1
Q ss_pred HHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 492 SFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHK 571 (647)
Q Consensus 492 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 571 (647)
...+.|++++|+.....-++.. +-|...-..|++.+|-.|+++.|.+-++.+.+. .|+...-..+.+-..+
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~------ 76 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVK------ 76 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH------
T ss_pred HHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHH------
Confidence 3457788888888888877742 346777778888888888888888888888773 4543322222111111
Q ss_pred HHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHhC
Q 006396 572 AMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFH--QGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 572 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~ 637 (647)
|...-.....-+-.|.. +.....-...++.++. ..|+.++|.+.-..+.+.
T Consensus 77 aE~~R~~vfaG~~~P~~---------------~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 77 AAQARKDFAQGAATAKV---------------LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHTTSCCCEEC---------------CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCC---------------CCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222333332222220 1122334445555555 459999999999988764
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.51 E-value=7.5 Score=31.96 Aligned_cols=84 Identities=14% Similarity=0.050 Sum_probs=61.6
Q ss_pred HHHHHHHHc-----CCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHH
Q 006396 469 QLLEDMYVI-----GVTPDQITYNTIIRSFCK--CKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCL 540 (647)
Q Consensus 469 ~~~~~~~~~-----~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 540 (647)
.++++.... ....|+.-....+..-.. +++..++..+|..|...|+-.. ..-|......+...|++++|..+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~V 137 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVL 137 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 566666552 234565544433332222 5668899999999999776654 77788888999999999999999
Q ss_pred HHHHHHcCCCCC
Q 006396 541 LVSLQEHNISLT 552 (647)
Q Consensus 541 ~~~~~~~~~~~~ 552 (647)
|+.-++.+-.|-
T Consensus 138 y~~GI~~~A~P~ 149 (202)
T 3esl_A 138 LELGAENNCRPY 149 (202)
T ss_dssp HHHHHHTTCBSH
T ss_pred HHHHHHcCCccH
Confidence 999999887773
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=84.92 E-value=11 Score=28.50 Aligned_cols=62 Identities=16% Similarity=0.147 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
|.=+..+-++.+...++-|++.+..+.+++|.+.+|+..|.++++-+..+ ..+...+|..++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 33445555666666667777777777777777777777777777777654 233334454443
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.54 E-value=5.8 Score=29.85 Aligned_cols=48 Identities=10% Similarity=0.041 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+..+-++.+...++.|++.+....+++|.+.+|+.-|+++++-...+-
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~ 118 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA 118 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 455566666677789999999999999999999999999999998764
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.37 E-value=6.3 Score=37.77 Aligned_cols=98 Identities=7% Similarity=-0.072 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhC--CCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-CCCCCHHHHH----
Q 006396 485 TYNTIIRSFCKCKDLRKAFQLLNQMWLH--NLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH-NISLTKVAYT---- 557 (647)
Q Consensus 485 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~---- 557 (647)
+...+...|.+.|+++.|.+.+.++... +...-...+...++.+...+++..+...+.++... .-.++.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 4566777777888888888888777762 22233666777777777778888887777776542 0112222221
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
.-+..+...+++..|...|-.+...
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhChHHHHHHHHHHHhcc
Confidence 2223344567777777777666543
|
| >1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1 | Back alignment and structure |
|---|
Probab=81.92 E-value=3.5 Score=35.74 Aligned_cols=58 Identities=19% Similarity=0.256 Sum_probs=52.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGL 639 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 639 (647)
....+.|+.++|+.....-++.. |.|...-..+...|+-.|+|+.|..-++.+.+.++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~---------------------P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p 62 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS---------------------PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 62 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC---------------------CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 45678899999999999999988 88999999999999999999999999999888664
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=80.79 E-value=12 Score=29.17 Aligned_cols=47 Identities=15% Similarity=0.177 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 537 ADCLLVSLQEHNISLTKV-AYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 537 A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
+.++|.-|...|+-.... .|...+..+...|++++|..+|+..++.+
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 131 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQ 131 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 555555555544433322 34445555555555555555555555444
|
| >4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A | Back alignment and structure |
|---|
Probab=80.63 E-value=15 Score=28.60 Aligned_cols=73 Identities=14% Similarity=0.126 Sum_probs=54.3
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHH
Q 006396 479 VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPT-SATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKV 554 (647)
Q Consensus 479 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 554 (647)
...|+.-...-+..-..+. ++..+|..|...|+-.. ..-|......+...|++++|.++|+.-++.+-.|-..
T Consensus 64 YknD~RyLklWl~ya~~~~---dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~r 137 (152)
T 4a1g_A 64 YHNDPRFISYCLKFAEYNS---DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPREF 137 (152)
T ss_dssp GTTCHHHHHHHHHHHTTBS---CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred ccCCHHHHHHHHHHHHhcC---CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHH
Confidence 3456655444444333333 38899999999877664 7778888889999999999999999999988777443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=80.32 E-value=14 Score=35.34 Aligned_cols=63 Identities=11% Similarity=-0.110 Sum_probs=40.3
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcC--CCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHh
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGK--EFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLK 126 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~ 126 (647)
.++..++..+.+.|++++|.+.|.++... +...-...+...++.+...+++..+...+.++..
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~ 196 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNS 196 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 35666777777777777777777776542 2222344666667777777777777777666643
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 647 | ||||
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 4e-07 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.4 bits (119), Expect = 4e-07
Identities = 37/207 (17%), Positives = 73/207 (35%), Gaps = 9/207 (4%)
Query: 167 DAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV-TYTVLICGYCQIGNVEEGLKL 225
A+ +S L F+ +I A +K + DP+ + Y L + + +
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL--DPNFLDAYINLGNVLKEARIFDRAVAA 225
Query: 226 REVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLV-TYSILIRGLC 284
LS + + + L + G ID A+ A+ L+P Y L L
Sbjct: 226 YLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTY--RRAIELQPHFPDAYCNLANALK 282
Query: 285 KQDKVHKAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVV 344
++ V +A YN + + + E+ I EA + + +
Sbjct: 283 EKGSVAEAEDCYNTALRLCPTHADSLNNLANI-KREQGNIEEAVRLYRKALEVFP-EFAA 340
Query: 345 LYNIMIDGYVKLGNIGEAVQLYRQLIE 371
++ + + G + EA+ Y++ I
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIR 367
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 647 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.69 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.66 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.35 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.29 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.27 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.27 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.2 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.18 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.15 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.15 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.96 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.91 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.88 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.83 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.82 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.8 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.79 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.76 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.76 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.73 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.71 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.67 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.6 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.56 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.53 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.48 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.46 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.41 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.37 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.37 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 98.32 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.3 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.27 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.21 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.2 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.18 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.16 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.12 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.8 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.79 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.79 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.71 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.66 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.54 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.48 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.1 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.69 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 95.12 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.11 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.01 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 93.98 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 90.22 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.91 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.92 | |
| d1bpoa1 | 157 | Clathrin heavy-chain linker domain {Rat (Rattus no | 81.52 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=4.9e-23 Score=198.86 Aligned_cols=382 Identities=14% Similarity=0.039 Sum_probs=261.9
Q ss_pred HHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHH
Q 006396 211 CGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVH 290 (647)
Q Consensus 211 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 290 (647)
..+.+.|++++|.+.++.+.+..+ .++..+..+..++.+.|++++|...+++..+.. +.+..+|..+..++...|+++
T Consensus 7 ~~~~~~G~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~ 84 (388)
T d1w3ba_ 7 HREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ 84 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence 344455555555555555554422 134445555555555555555555555555432 113445555555555556666
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 291 KAIQLYNEMCSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLI 370 (647)
Q Consensus 291 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 370 (647)
+|+..+....... +.....................+........... .................+....+...+....
T Consensus 85 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 85 EAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHHhh
Confidence 6655555555432 1222222222333333333333333333333322 2233334444555666777777777777766
Q ss_pred HCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHH
Q 006396 371 EKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVT 450 (647)
Q Consensus 371 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 450 (647)
...+. +...+..+...+...++++.|...++...... +.+...+..+...+...|++++|...++...... +.+...
T Consensus 163 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 239 (388)
T d1w3ba_ 163 ETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV 239 (388)
T ss_dssp HHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred ccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence 65322 45666777778888888888888888877653 4456778888888888999999999998887764 456677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
+..+...+.+.|++++|...++++.+.. +.+..++..+..++...|++++|...++..... .+.+...+..++.++..
T Consensus 240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~ 317 (388)
T d1w3ba_ 240 HGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKRE 317 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHH
Confidence 7888888889999999999999988864 556778888999999999999999999988874 24568888899999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEI 610 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 610 (647)
.|++++|+..++++++.. |.+..++..++.++...|++++|+..|+++++.. |.+..+
T Consensus 318 ~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~---------------------P~~~~a 375 (388)
T d1w3ba_ 318 QGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS---------------------PTFADA 375 (388)
T ss_dssp TTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC---------------------TTCHHH
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------------CCCHHH
Confidence 999999999999998752 3456688999999999999999999999999877 677899
Q ss_pred HHHHHHHHHcCCC
Q 006396 611 CEVMLIAFHQGGD 623 (647)
Q Consensus 611 ~~~l~~~~~~~g~ 623 (647)
|..++.+|.+.||
T Consensus 376 ~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 376 YSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHHTCC
T ss_pred HHHHHHHHHHcCC
Confidence 9999999998886
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=8.4e-22 Score=190.07 Aligned_cols=381 Identities=13% Similarity=0.048 Sum_probs=249.7
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCCh
Q 006396 140 IHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGNV 219 (647)
Q Consensus 140 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 219 (647)
...+.+.|++++|.+.++++.+.. |.+...+..+..++...|++++|...+++.++..+. +..++..+...+...|++
T Consensus 6 a~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 6 AHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhhccc
Confidence 344555566666666666655542 234455555555555556666666555555544211 234455555555555555
Q ss_pred HHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHhhHHHHHHHHHccCCHHHHHHHHHHH
Q 006396 220 EEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAVGLKPDLVTYSILIRGLCKQDKVHKAIQLYNEM 299 (647)
Q Consensus 220 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 299 (647)
++|.+.+......... +..............+....+...........
T Consensus 84 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------- 131 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYN------------------------------- 131 (388)
T ss_dssp HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-------------------------------
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccccccc-------------------------------
Confidence 5555555555443211 22222222222333333333333332222221
Q ss_pred HhCCCCCCcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCcc
Q 006396 300 CSKRISPNSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIV 379 (647)
Q Consensus 300 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 379 (647)
.................+....+...+....... +.+...+..+...+...|+++.|...+++.++..+. +..
T Consensus 132 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~ 204 (388)
T d1w3ba_ 132 -----PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLD 204 (388)
T ss_dssp -----TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHH
T ss_pred -----cccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHH
Confidence 1122222233333334444444444444444332 334556667777788888888888888887775432 556
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
.+..+...+...|++++|...++...... +.+...+..+...+.+.|++++|...|+...+.. +.+..++..+...+.
T Consensus 205 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 282 (388)
T d1w3ba_ 205 AYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALK 282 (388)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHH
T ss_pred HHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 77778888888888888888888877654 4566777788888889999999999999887763 345677888888999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHH
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNAD 538 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~ 538 (647)
..|++++|.+.++...... +.+...+..+...+...|++++|...++++++ +.| +..++..++.+|...|++++|.
T Consensus 283 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~g~~~~A~ 359 (388)
T d1w3ba_ 283 EKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp HHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred HcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999888764 67778888899999999999999999999987 455 4788889999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 006396 539 CLLVSLQEHNISL-TKVAYTTIIKAHCAEGD 568 (647)
Q Consensus 539 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~ 568 (647)
..|+++++. .| +..+|..++.++.+.||
T Consensus 360 ~~~~~al~l--~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 360 MHYKEAIRI--SPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence 999999884 45 46688999999888775
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=8.8e-15 Score=136.06 Aligned_cols=243 Identities=9% Similarity=-0.010 Sum_probs=129.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 006396 350 IDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNI 429 (647)
Q Consensus 350 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 429 (647)
...+.+.|++++|+..|+++++..+. +..++..+..++...|++++|...+.+..+.. +-+...+..+..+|...|++
T Consensus 26 g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 26 GLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 44455666666666666666655322 44555556666666666666666666555432 33445555555566666666
Q ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 430 QRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQM 509 (647)
Q Consensus 430 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 509 (647)
++|.+.++...... |+............. ..+.......+..+...+.+.+|...+.++
T Consensus 104 ~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a 162 (323)
T d1fcha_ 104 RQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAA 162 (323)
T ss_dssp HHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHHHHHHHHHH
Confidence 66666666555431 111000000000000 000000001111223334455666666665
Q ss_pred HhCC-CCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccc
Q 006396 510 WLHN-LEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISI 588 (647)
Q Consensus 510 ~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 588 (647)
++.. -.++..++..++..+...|++++|...++++.... +.+..+|..++.++...|++++|++.++++++..
T Consensus 163 l~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----- 236 (323)
T d1fcha_ 163 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ----- 236 (323)
T ss_dssp HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----
T ss_pred HHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-----
Confidence 5521 12245566666666666677777777776666542 3345566666666667777777777777666655
Q ss_pred hhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 589 RDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 589 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
|.+..+|..++.+|.+.|++++|++.++++++.
T Consensus 237 ----------------p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 269 (323)
T d1fcha_ 237 ----------------PGYIRSRYNLGISCINLGAHREAVEHFLEALNM 269 (323)
T ss_dssp ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred ----------------hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 555666666777777777777777776666653
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.66 E-value=3.1e-14 Score=132.29 Aligned_cols=288 Identities=12% Similarity=0.028 Sum_probs=207.9
Q ss_pred CcccHHHHHHHHhhcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHH
Q 006396 307 NSFAHGAILLGLCEKEMITEARMYFDSLIMSNCIQDVVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIY 386 (647)
Q Consensus 307 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 386 (647)
+..........+...|++++|...|+.+++.. |.+...|..+..++...|+++.|...+.+.++..+. +...+..+..
T Consensus 18 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~ 95 (323)
T d1fcha_ 18 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAV 95 (323)
T ss_dssp TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccc
Confidence 33344566777899999999999999999876 457888999999999999999999999999987543 6678888899
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 006396 387 GFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQE 466 (647)
Q Consensus 387 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 466 (647)
++...|++++|.+.++.+.... |+............. ..+.......+..+...+.+.+
T Consensus 96 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (323)
T d1fcha_ 96 SFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAG-------------------GAGLGPSKRILGSLLSDSLFLE 154 (323)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC----------------------------------CTTHHHHHHHHHHH
T ss_pred cccccccccccccchhhHHHhc--cchHHHHHhhhhhhh-------------------hcccccchhhHHHHHHhhHHHH
Confidence 9999999999999999988752 321111000000000 0000011111222334456777
Q ss_pred HHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHH
Q 006396 467 AVQLLEDMYVIG-VTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSL 544 (647)
Q Consensus 467 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 544 (647)
+...+.+..+.. -..+..++..+...+...|++++|...+++.+.. .| +...|..++.+|...|++++|.+.++++
T Consensus 155 a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 232 (323)
T d1fcha_ 155 VKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRA 232 (323)
T ss_dssp HHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHH
Confidence 888888877643 2345677888889999999999999999999883 44 5888999999999999999999999999
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 545 QEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
++.. +-+..++..++.+|...|++++|+..|+++++.. |...... ..........|..+..++...|+.
T Consensus 233 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--p~~~~~~--------~~~~~~~~~~~~~l~~al~~~~~~ 301 (323)
T d1fcha_ 233 LELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ--RKSRGPR--------GEGGAMSENIWSTLRLALSMLGQS 301 (323)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HTC--------------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CcChhhh--------hhhHHHHHHHHHHHHHHHHHcCCH
Confidence 9853 3456689999999999999999999999998743 1100000 001123355778888888888887
Q ss_pred HHHHHH
Q 006396 625 GSVFEL 630 (647)
Q Consensus 625 ~~A~~~ 630 (647)
+.+...
T Consensus 302 d~~~~~ 307 (323)
T d1fcha_ 302 DAYGAA 307 (323)
T ss_dssp GGHHHH
T ss_pred HHHHHH
Confidence 766543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=9.8e-11 Score=106.66 Aligned_cols=231 Identities=5% Similarity=-0.007 Sum_probs=150.9
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG-NIQRLLALLQEMETKAIGPTHVTYTVVIKGL 458 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 458 (647)
.++.+...+.+.+..++|...++++++.. +-+...|+....++...| ++++|+..++...+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 34455556667777777877777777653 445566676666666655 4777777777776653 34566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCC----
Q 006396 459 CKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGD---- 533 (647)
Q Consensus 459 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~---- 533 (647)
...|++++|+..++++++.. +.+...|..+...+...|++++|+..++++++ +.| +...|+.+..++...+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~--~~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHH--HCCccHHHHHHHHHHHHHccccchh
Confidence 77777777777777777754 55667777777777777777777777777777 334 46677766666655554
Q ss_pred --hhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHH
Q 006396 534 --LKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEIC 611 (647)
Q Consensus 534 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 611 (647)
+++|...+.++++.. +.+...|..+...+.. ...+++.+.++.+.+.. +...+...+
T Consensus 200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~-------------------~~~~~~~~~ 258 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQ-------------------PSHSSPYLI 258 (315)
T ss_dssp HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHT-------------------TTCCCHHHH
T ss_pred hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhC-------------------CCcCCHHHH
Confidence 456777777777642 4455566666655443 44577777777776644 113345556
Q ss_pred HHHHHHHHcC--CCHHHHHHHHHHHHh
Q 006396 612 EVMLIAFHQG--GDLGSVFELAAVMIK 636 (647)
Q Consensus 612 ~~l~~~~~~~--g~~~~A~~~~~~~~~ 636 (647)
..++..|... ++.+.+...++++.+
T Consensus 259 ~~l~~~y~~~~~~~~~~~~~~~~ka~~ 285 (315)
T d2h6fa1 259 AFLVDIYEDMLENQCDNKEDILNKALE 285 (315)
T ss_dssp HHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 6666666443 555666666666554
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=3.8e-10 Score=102.81 Aligned_cols=218 Identities=11% Similarity=-0.047 Sum_probs=103.8
Q ss_pred hHHHHHHHHHHhCCCCCCcccHHHHHHHHHhc--------------CChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh
Q 006396 45 DIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQ--------------SRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK 110 (647)
Q Consensus 45 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (647)
+.+..+|++++..- |.++..|...+..+... +..++|..+|+++++..++.+...|...+..+.+
T Consensus 33 ~Rv~~vyerAl~~~-~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~ 111 (308)
T d2onda1 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHh
Confidence 33555666665522 25555565555443322 2235555666666544333344455555555666
Q ss_pred cCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHH-HHhcCChhhHHH
Q 006396 111 LGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKG-FHLLSQISGAWK 189 (647)
Q Consensus 111 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~a~~ 189 (647)
.|+++.|..+|+++++........+|...+..+.+.|+++.|.++|+.+.+.+ +.+...|...+.. +...|+.+.|..
T Consensus 112 ~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~ 190 (308)
T d2onda1 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHH
Confidence 66666666666666554311123345555555555566666666666655542 2233333333222 122345555555
Q ss_pred HHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCC-CcC--cccHHHHHHHHHhcCChhHHHHHHHHHH
Q 006396 190 VIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGF-KLN--VIAYSVLLSSMCKSGRIDEALGLLYEME 265 (647)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 265 (647)
+|+.+.... +.+...|...+..+...|+++.|..+|++...... .|. ...|...+..-...|+.+.+..+++++.
T Consensus 191 i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~ 268 (308)
T d2onda1 191 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 555554431 11233444555555555555555555555444321 111 1234444444444455555555444443
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.29 E-value=1.1e-09 Score=99.57 Aligned_cols=189 Identities=10% Similarity=0.084 Sum_probs=122.8
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 006396 428 NIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLN 507 (647)
Q Consensus 428 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 507 (647)
..++|..+|+...+...+.+...|...+..+...|+.+.|..+++++++........+|...+..+.+.|+++.|.++|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34666777777665443445556666667777777777777777777764322224466777777777777777777777
Q ss_pred HHHhCCCCCCHHHHHHHHHH-HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcc
Q 006396 508 QMWLHNLEPTSATYNILIDG-LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEI 586 (647)
Q Consensus 508 ~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 586 (647)
++++.. +.+...|...+.. +...|+.+.|..+|+++++. .+.+...|...+..+...|+++.|+.+|++++...
T Consensus 159 ~al~~~-~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~--- 233 (308)
T d2onda1 159 KAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG--- 233 (308)
T ss_dssp HHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS---
T ss_pred HHHHhC-CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC---
Confidence 777642 2233444333332 23456777788888777765 34456677777777777788888888888777654
Q ss_pred cchhhhhHHHHhhhhCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 587 SIRDYTKSFFCMMLSNGFPPD--QEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 587 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.+|+ ...|...+..-...|+.+.+..+.+++.+.
T Consensus 234 ----------------~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 234 ----------------SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp ----------------SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred ----------------CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 11222 456777777767778888887777777653
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.29 E-value=1.7e-09 Score=101.38 Aligned_cols=272 Identities=14% Similarity=0.054 Sum_probs=169.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----ccchHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHH
Q 006396 349 MIDGYVKLGNIGEAVQLYRQLIEKRISPS----IVTFNSLIYGFCKNGKVADARRLLDTIKLH----GLE-PSAVTYTTF 419 (647)
Q Consensus 349 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l 419 (647)
....+...|++++|+.++++.++..+..+ ...+..+..++...|++++|...++..... +.. .....+..+
T Consensus 18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 97 (366)
T d1hz4a_ 18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97 (366)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 34556677888888888877776532211 124455666777778888888877766542 101 112344555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHh----CCCC--CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHHHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMET----KAIG--PT-HVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT----PDQITYNT 488 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~----~~~~--~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~ 488 (647)
...+...|++..+...+..... .... +. ...+..+...+...|+++.+...+......... .....+..
T Consensus 98 ~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (366)
T d1hz4a_ 98 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAM 177 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHH
Confidence 6667777888888777776543 1111 11 124455566677788888888888777764211 22334455
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHh--CCCCC----CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC---HHHHHHH
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWL--HNLEP----TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT---KVAYTTI 559 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~--~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l 559 (647)
....+...++...+...+..... ..... ....+..+...+...|++++|...+++..+.....+ ...+..+
T Consensus 178 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~l 257 (366)
T d1hz4a_ 178 LIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNI 257 (366)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 56667777888888777776654 11111 133455666777788888888888887765322222 2345567
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHh
Q 006396 560 IKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMIK 636 (647)
Q Consensus 560 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 636 (647)
+.++...|++++|...+++++... ...+.+| ...++..++.+|.+.|++++|.+.++++++
T Consensus 258 a~~~~~~g~~~~A~~~~~~al~~~----------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 258 ARAQILLGEFEPAEIVLEELNENA----------------RSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH----------------HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHH----------------hhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 778888888888888888876422 0011222 356777888888888888888888887764
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.27 E-value=6.7e-09 Score=97.25 Aligned_cols=274 Identities=10% Similarity=0.003 Sum_probs=174.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CccchHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCC---C
Q 006396 345 LYNIMIDGYVKLGNIGEAVQLYRQLIEKRISP-----SIVTFNSLIYGFCKNGKVADARRLLDTIKL----HGLEP---S 412 (647)
Q Consensus 345 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~~~~---~ 412 (647)
.+..+..++...|++++|...+++..+..... ....+..+...+...+++..+...+..... .+... .
T Consensus 53 a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~ 132 (366)
T d1hz4a_ 53 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH 132 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHH
Confidence 34455566666777777777776665421110 112334455566677777777777765543 11111 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----
Q 006396 413 AVTYTTFMNAYCEEGNIQRLLALLQEMETK----AIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIG--VTPD---- 482 (647)
Q Consensus 413 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~---- 482 (647)
...+..+...+...|+++.+...+...... +.......+......+...++...+...+....... ....
T Consensus 133 ~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~ 212 (366)
T d1hz4a_ 133 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWI 212 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHH
T ss_pred HHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchH
Confidence 234455667777888888888888776653 222234455556666777888888888877765521 1111
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC---CHHHHHHHHHHHhhcCChhhHHHHHHHHHH----cCCCCC-HH
Q 006396 483 QITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP---TSATYNILIDGLCVNGDLKNADCLLVSLQE----HNISLT-KV 554 (647)
Q Consensus 483 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~-~~ 554 (647)
...+..+...+...|+++.|...++......... ....+..+..++...|++++|...++++.. .+..|+ ..
T Consensus 213 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 292 (366)
T d1hz4a_ 213 SNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNR 292 (366)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHH
Confidence 2345566677888999999999999887632211 255667788999999999999999998874 233443 34
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 006396 555 AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFEL 630 (647)
Q Consensus 555 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 630 (647)
++..++.++...|++++|.+.++++++..-..+. ... +......+..++..+...|+.+++.+-
T Consensus 293 ~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~---~~~---------~~~~~~~~~~~~~~l~~~~~l~e~e~~ 356 (366)
T d1hz4a_ 293 NLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGF---ISH---------FVIEGEAMAQQLRQLIQLNTLPELEQH 356 (366)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCC---CHH---------HHTTHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCc---HHH---------HHHHHHHHHHHHHHHHhcCCChHHHHH
Confidence 7788899999999999999999998764310000 000 012344566677778888888777543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.27 E-value=4.9e-10 Score=101.91 Aligned_cols=198 Identities=9% Similarity=-0.004 Sum_probs=132.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcC-ChhhHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLG-FAEVAKGLFCLMLKYGLHPDAFSYNILIHG 142 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (647)
.+++.++..+.+.+.+++|+..++++++..|. +..+|+....++...| ++++|+..++++++.. +-+..+|..+...
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 45666667777777777777777777775433 5567777777777665 4777777777777664 4556677777777
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhcCC----
Q 006396 143 LCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQIGN---- 218 (647)
Q Consensus 143 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 218 (647)
+.+.|++++|++.++++.+.. +.+...|..+..++...|++++|++.++++++.++. +...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSH
T ss_pred HHhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchh
Confidence 777777777777777777652 446777777777777777777777777777776322 44556655555544443
Q ss_pred --hHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 219 --VEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 219 --~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
+++|++.+....+..+. +...|..+...+.. ...+++.+.++...+.
T Consensus 200 ~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l 248 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDL 248 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence 56777777777766432 55566666555443 3356666777666554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.20 E-value=6.9e-10 Score=98.53 Aligned_cols=95 Identities=6% Similarity=-0.133 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 006396 415 TYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFC 494 (647)
Q Consensus 415 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 494 (647)
.+..+..+|.+.|++++|...|+...+.. +-+..+|..+..++...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 34444555555555555555555555432 2344455555555555555555555555555542 333445555555555
Q ss_pred hcCCHHHHHHHHHHHHh
Q 006396 495 KCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~ 511 (647)
..|++++|...+++.++
T Consensus 117 ~~g~~~~A~~~~~~al~ 133 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQ 133 (259)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHh
Confidence 55555555555555555
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.18 E-value=6.3e-11 Score=109.80 Aligned_cols=216 Identities=5% Similarity=-0.122 Sum_probs=119.2
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHH
Q 006396 393 KVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEG--NIQRLLALLQEMETKAIGPTHVTYT-VVIKGLCKQWKLQEAVQ 469 (647)
Q Consensus 393 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~a~~ 469 (647)
++++|...++.+.+.. +.+...|..+..++...+ ++++|...++.+.... +++...+. .....+...+.+++|+.
T Consensus 88 ~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~ 165 (334)
T d1dcea1 88 LVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELA 165 (334)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHH
Confidence 3556666666665542 334555555555554443 3566666666666543 23344433 33345555666777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCC
Q 006396 470 LLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNI 549 (647)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 549 (647)
.++.+++.. +-+...|..+..++...|++++|...+..... +.|+. ..+...+...+..+++...+.+.....
T Consensus 166 ~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~- 238 (334)
T d1dcea1 166 FTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPEN--VLLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR- 238 (334)
T ss_dssp HHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHH--HHHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-
T ss_pred HHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHH--hHHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-
Confidence 666666543 44556666666666666666655444443333 11111 112223344455566666666665542
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 006396 550 SLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFE 629 (647)
Q Consensus 550 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 629 (647)
+++...+..++..+...|++++|+..+.+....+ |.+..++..++.++...|++++|.+
T Consensus 239 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---------------------p~~~~~~~~l~~~~~~~~~~~eA~~ 297 (334)
T d1dcea1 239 AEPLFRCELSVEKSTVLQSELESCKELQELEPEN---------------------KWCLLTIILLMRALDPLLYEKETLQ 297 (334)
T ss_dssp CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC---------------------HHHHHHHHHHHHHHCTGGGHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC---------------------chHHHHHHHHHHHHHHCCCHHHHHH
Confidence 3334445555555666666666666666665554 4445666666666666666666666
Q ss_pred HHHHHHhCC
Q 006396 630 LAAVMIKSG 638 (647)
Q Consensus 630 ~~~~~~~~~ 638 (647)
.++++++.+
T Consensus 298 ~~~~ai~ld 306 (334)
T d1dcea1 298 YFSTLKAVD 306 (334)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHC
Confidence 666666654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.15 E-value=8e-10 Score=98.11 Aligned_cols=196 Identities=11% Similarity=-0.049 Sum_probs=97.2
Q ss_pred chHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 006396 380 TFNSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC 459 (647)
Q Consensus 380 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 459 (647)
++..+..+|.+.|++++|...|++..... +.++.++..+..+|...|++++|+..|+++.+.. +.+..++..+..++.
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 116 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIALY 116 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHHH
Confidence 33444555555566666666665555432 3345556666666666666666666666665542 223445555666666
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhc----CChh
Q 006396 460 KQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVN----GDLK 535 (647)
Q Consensus 460 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~----g~~~ 535 (647)
..|++++|...++...+.. +.+......+...+.+.+..+.+..+....... .++...+.. +..+... +..+
T Consensus 117 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~~~ 192 (259)
T d1xnfa_ 117 YGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS--DKEQWGWNI-VEFYLGNISEQTLME 192 (259)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS--CCCSTHHHH-HHHHTTSSCHHHHHH
T ss_pred HHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc--chhhhhhhH-HHHHHHHHHHHHHHH
Confidence 6666666666666666543 333333333333444444444444444444432 111111111 1111111 1112
Q ss_pred hHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 536 NADCLLVSLQEHNISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 536 ~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+...+..... ..|+ ..++..++..+...|++++|+..|++++...
T Consensus 193 ~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 193 RLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp HHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 22222211111 1121 2356667777788888888888888877655
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.15 E-value=6.9e-11 Score=109.53 Aligned_cols=251 Identities=11% Similarity=-0.045 Sum_probs=156.2
Q ss_pred cCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHH----------hcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHh
Q 006396 41 LRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLC----------QQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCK 110 (647)
Q Consensus 41 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (647)
....+.|+.+++.++...| .+..+|+.....+. ..|++++|+..++.++...+. +...|.....++..
T Consensus 42 ~~~~~~al~~~~~~l~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~ 119 (334)
T d1dcea1 42 GELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR 119 (334)
T ss_dssp TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHH
Confidence 3345777777777776454 44455544333322 334477788888877765432 55666666666666
Q ss_pred cCC--hhhHHHHHHHHHhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhH
Q 006396 111 LGF--AEVAKGLFCLMLKYGLHPDAFSYN-ILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGA 187 (647)
Q Consensus 111 ~g~--~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 187 (647)
.++ +++|...+.++++.. +++...+. .....+...+.+++|+..++.+.+.+ +-+...|+.+..++...|++++|
T Consensus 120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A 197 (334)
T d1dcea1 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (334)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHH
Confidence 543 677777777777664 44455543 33355556777888888877777663 34667777777777777777766
Q ss_pred HHHHHHHHhcCCCCCcchHHHHHHHHHhcCChHHHHHHHHHHHhCCCCcCcccHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 006396 188 WKVIQKLLIKGSDPDIVTYTVLICGYCQIGNVEEGLKLREVMLSQGFKLNVIAYSVLLSSMCKSGRIDEALGLLYEMEAV 267 (647)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 267 (647)
...++..... .|+ .......+...+..+++...+........ ++...+..+...+...|+.++|...+.+....
T Consensus 198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 271 (334)
T d1dcea1 198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELSVEKSTVLQSELESCKELQELEPE 271 (334)
T ss_dssp SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 5544433322 011 11223334455666667777776666542 34555666677777777888888877777654
Q ss_pred CCCCCHhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 006396 268 GLKPDLVTYSILIRGLCKQDKVHKAIQLYNEMCSK 302 (647)
Q Consensus 268 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 302 (647)
. +.+...+..+..++...|+.++|++.++.+.+.
T Consensus 272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l 305 (334)
T d1dcea1 272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 305 (334)
T ss_dssp C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 2 114456677777777888888888888887764
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.96 E-value=2.1e-08 Score=83.15 Aligned_cols=142 Identities=13% Similarity=0.022 Sum_probs=109.2
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDV 569 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 569 (647)
...+...|+++.|++.|.++ .+|++.+|..++.+|...|++++|++.|+++++.+ +.+...|..++.++.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 44567789999999998864 35678889999999999999999999999999864 44567999999999999999
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCC-CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPP-DQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLPD 642 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 642 (647)
++|+..|++++...-......+.. .....+. ...++..++.++.+.|++++|.+.++++++..+.++
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~------~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~ 154 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKI------LGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 154 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGG------GTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred HHHHHHHHHHHHhCccCchHHHHH------hhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence 999999999986431111111110 0001111 246788999999999999999999999998777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.91 E-value=1.5e-08 Score=76.15 Aligned_cols=93 Identities=10% Similarity=-0.032 Sum_probs=49.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 006396 489 IIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD 568 (647)
Q Consensus 489 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 568 (647)
-...+...|++++|+.+|+++++.. +.++..|..++.+|...|++++|+..+.++++.+ +.+...|..++.++...|+
T Consensus 9 ~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~ 86 (117)
T d1elwa_ 9 KGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR 86 (117)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence 3444555555555555555555521 2235555555555555555555555555555542 3344455555555555555
Q ss_pred HHHHHHHHHHHHHcC
Q 006396 569 VHKAMTFFCQMVEKG 583 (647)
Q Consensus 569 ~~~A~~~~~~~~~~~ 583 (647)
+++|+..|+++++..
T Consensus 87 ~~~A~~~~~~a~~~~ 101 (117)
T d1elwa_ 87 FEEAKRTYEEGLKHE 101 (117)
T ss_dssp HHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555555555544
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.88 E-value=4.5e-08 Score=73.45 Aligned_cols=108 Identities=10% Similarity=0.029 Sum_probs=90.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh
Q 006396 451 YTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV 530 (647)
Q Consensus 451 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 530 (647)
+..-...+...|++++|+..|+++++.. +.+...|..+..+|...|++++|+..+..+++.+ +.++..|..++.++..
T Consensus 6 l~~~g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~ 83 (117)
T d1elwa_ 6 LKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEF 83 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHH
Confidence 3445677889999999999999999875 7778899999999999999999999999999843 3468999999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 531 NGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 531 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
.|++++|+..+++.++.. |.+...+..+..
T Consensus 84 ~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 113 (117)
T d1elwa_ 84 LNRFEEAKRTYEEGLKHE-ANNPQLKEGLQN 113 (117)
T ss_dssp TTCHHHHHHHHHHHHTTC-TTCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 999999999999999853 334445555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.83 E-value=1.4e-08 Score=85.73 Aligned_cols=101 Identities=8% Similarity=-0.087 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 481 PDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTII 560 (647)
Q Consensus 481 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~ 560 (647)
|+...+...+..+.+.|++++|+..|+++++.+ +.++..|..++.+|.+.|++++|+..|+++++.. +-+..+|..++
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHH
Confidence 556666677777777788888888887777732 2357777777777888888888888888777632 22455777777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcC
Q 006396 561 KAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 561 ~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.++...|++++|+..|+++++..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~ 102 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLA 102 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC
Confidence 78888888888888887777643
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.82 E-value=2e-07 Score=77.09 Aligned_cols=122 Identities=10% Similarity=-0.092 Sum_probs=85.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCCh
Q 006396 456 KGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDL 534 (647)
Q Consensus 456 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~ 534 (647)
..+...|++++|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++ +.| ++..|..++.+|.+.|++
T Consensus 13 ~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~--ldp~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 13 VLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSIN--RDKHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHH--HhhhhhhhHHHHHHHHHhhccH
Confidence 3455677777777777653 256666777777777777777777777777777 344 467777777777777777
Q ss_pred hhHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 535 KNADCLLVSLQEHNI--------------SLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 535 ~~A~~~~~~~~~~~~--------------~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++|...|++++.... +++ ..++..++.++...|++++|.+.++++++..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 777777777765310 011 2456677888888889999988888888765
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=9.4e-08 Score=76.58 Aligned_cols=119 Identities=14% Similarity=0.041 Sum_probs=95.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 488 TIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 488 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
.....|.+.|++++|...|+++++. .| +...|..++.+|...|++++|...|+++++.+ +.+..+|..++.++...
T Consensus 15 ~~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~ 91 (159)
T d1a17a_ 15 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL 91 (159)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence 3456778899999999999999984 44 68889999999999999999999999999853 44567899999999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHH--HcCCCHHHHHHH
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAF--HQGGDLGSVFEL 630 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 630 (647)
|++++|+..+++++... |.+..++..+..+. ...+.+++|...
T Consensus 92 g~~~eA~~~~~~a~~~~---------------------p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 92 GKFRAALRDYETVVKVK---------------------PHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp TCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---------------------CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999887 66677776665543 334556666544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.79 E-value=8.4e-08 Score=85.97 Aligned_cols=202 Identities=11% Similarity=-0.089 Sum_probs=121.4
Q ss_pred hHHHHHHHHHhCCCCcCHHHHHHHHH--hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhc
Q 006396 14 DAVFVIAKMKELDLKVSIQTYNSLLY--NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAG 91 (647)
Q Consensus 14 ~A~~~~~~~~~~~~~~~~~~~~~ll~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 91 (647)
++.++++++-+.. .+... +..++. ..++++.|..+|.++ +..|...|++++|...|.++..
T Consensus 3 ~~~~~l~~aek~~-~~~~~-~~~~~~~~~~~~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~ 65 (290)
T d1qqea_ 3 DPVELLKRAEKKG-VPSSG-FMKLFSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAAD 65 (290)
T ss_dssp CHHHHHHHHHHHS-SCCCT-HHHHHSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc-Ccchh-HHHHhcCCccccHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHH
Confidence 5666666666553 23322 223333 344567777776654 5678899999999999998865
Q ss_pred C----CCCc-CHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCC---C--CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHh
Q 006396 92 K----EFGP-SVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGL---H--PDAFSYNILIHGLCI-AGSMEEALEFTNDMG 160 (647)
Q Consensus 92 ~----~~~~-~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~---~--~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~ 160 (647)
. +-++ ...+|..++.+|.+.|++++|...+++..+... . ....++..+...|.. .|++++|.+.+++..
T Consensus 66 ~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~ 145 (290)
T d1qqea_ 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG 145 (290)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHH
Confidence 2 1111 234788888999999999999999887765310 1 113345555666643 588888888887764
Q ss_pred hC----CCCC-ChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcc------hHHHHHHHHHhcCChHHHHHHHHHH
Q 006396 161 RH----GVEP-DAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIV------TYTVLICGYCQIGNVEEGLKLREVM 229 (647)
Q Consensus 161 ~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~ 229 (647)
+. +.++ -..++..+...+...|++++|.+.++++.......... .+...+..+...|+++.|.+.++..
T Consensus 146 ~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~ 225 (290)
T d1qqea_ 146 EWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (290)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred HHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 42 1111 12335566667777777777777777766542211111 1223334445566666666666666
Q ss_pred HhC
Q 006396 230 LSQ 232 (647)
Q Consensus 230 ~~~ 232 (647)
.+.
T Consensus 226 ~~~ 228 (290)
T d1qqea_ 226 QSE 228 (290)
T ss_dssp GCC
T ss_pred HHh
Confidence 554
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.76 E-value=2.5e-05 Score=68.39 Aligned_cols=112 Identities=13% Similarity=0.005 Sum_probs=54.3
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDV 569 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 569 (647)
....+...+...... .+...+..|...|.. ..+...+..+++...+.| +..+...+...+.. ..++
T Consensus 125 ~~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~ 198 (265)
T d1ouva_ 125 DFKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNF 198 (265)
T ss_dssp CHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCH
T ss_pred hhHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccch
Confidence 344444444444431 234444444444443 234444555555554432 34444444444443 3456
Q ss_pred HHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 570 HKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 570 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
++|+.+|+++.+.| ++..+..|+..|.+ ..+.++|.++++++.+.|
T Consensus 199 ~~A~~~~~~aa~~g-----------------------~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 199 KEALARYSKACELE-----------------------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHHHHHHHHHTT-----------------------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hhhhhhHhhhhccc-----------------------CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 66666666665544 24455555555554 225555666666655544
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.76 E-value=7.6e-08 Score=77.13 Aligned_cols=98 Identities=11% Similarity=-0.071 Sum_probs=88.3
Q ss_pred HHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhh
Q 006396 521 YNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMML 600 (647)
Q Consensus 521 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 600 (647)
+...+..|.+.|++++|...|+++++.+ +.+...|..++.++...|++++|+..|+++++..
T Consensus 13 l~~~gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~----------------- 74 (159)
T d1a17a_ 13 LKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD----------------- 74 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-----------------
T ss_pred HHHHHHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-----------------
Confidence 3445677889999999999999999964 5567799999999999999999999999999988
Q ss_pred hCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 601 SNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 601 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
|.+..+|..++.++...|++++|.+.++++++.+|.
T Consensus 75 ----p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~ 110 (159)
T d1a17a_ 75 ----KKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPH 110 (159)
T ss_dssp ----TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred ----ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Confidence 788999999999999999999999999999987643
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.73 E-value=5.3e-08 Score=72.33 Aligned_cols=91 Identities=7% Similarity=0.023 Sum_probs=74.4
Q ss_pred HHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhC
Q 006396 523 ILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSN 602 (647)
Q Consensus 523 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (647)
.++..+.+.|++++|...++++++.+ +-+..+|..++.++.+.|++++|+..++++++..
T Consensus 21 ~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~------------------- 80 (112)
T d1hxia_ 21 EEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD------------------- 80 (112)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-------------------
Confidence 45667788888888888888888753 3456688888888888888888888888888877
Q ss_pred CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q 006396 603 GFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI 635 (647)
Q Consensus 603 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 635 (647)
|.+..+|..++.+|...|++++|.+.+++.+
T Consensus 81 --p~~~~a~~~la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 81 --PKDIAVHAALAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp --TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --cccccchHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7778888888888888888888888888754
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.71 E-value=3.1e-07 Score=82.11 Aligned_cols=202 Identities=10% Similarity=-0.014 Sum_probs=135.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHH
Q 006396 420 MNAYCEEGNIQRLLALLQEMETK----AIGP-THVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVT-----PDQITYNTI 489 (647)
Q Consensus 420 ~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l 489 (647)
...|...+++++|...|.+..+. +-++ ...+|..+..+|.+.|++++|...+++..+.... ....++..+
T Consensus 44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l 123 (290)
T d1qqea_ 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (290)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence 45688888999998888876542 1111 2346788888899999999999999887653111 113456666
Q ss_pred HHHHH-hcCCHHHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-----H-HHHH
Q 006396 490 IRSFC-KCKDLRKAFQLLNQMWL----HNLEP-TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-----K-VAYT 557 (647)
Q Consensus 490 ~~~~~-~~~~~~~A~~~~~~~~~----~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~-~~~~ 557 (647)
...|. ..|++++|...++++.+ .+.++ ...++..++..+...|++++|...++++........ . ..+.
T Consensus 124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (290)
T d1qqea_ 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (290)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence 66664 46999999999998875 12122 245678899999999999999999999987432111 1 2345
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHc--CCCHHHHHHHHHHHH
Q 006396 558 TIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQ--GGDLGSVFELAAVMI 635 (647)
Q Consensus 558 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~ 635 (647)
..+.++...|+++.|...++++.+.. |... ...+......++.++.. .+.+++|+..|+++.
T Consensus 204 ~~~~~~l~~~d~~~A~~~~~~~~~~~--~~~~--------------~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 204 KKGLCQLAATDAVAAARTLQEGQSED--PNFA--------------DSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC-------------------------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCcc--------------chHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 56667788999999999999987754 1100 01123345566666655 245778887776554
Q ss_pred hC
Q 006396 636 KS 637 (647)
Q Consensus 636 ~~ 637 (647)
+.
T Consensus 268 ~l 269 (290)
T d1qqea_ 268 RL 269 (290)
T ss_dssp CC
T ss_pred hc
Confidence 43
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.67 E-value=7.9e-05 Score=65.08 Aligned_cols=223 Identities=10% Similarity=-0.028 Sum_probs=144.5
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCccchHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 006396 343 VVLYNIMIDGYVKLGNIGEAVQLYRQLIEKRISPSIVTFNSLIYGFCK----NGKVADARRLLDTIKLHGLEPSAVTYTT 418 (647)
Q Consensus 343 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 418 (647)
+..+..+...+.+.+++++|++.|++..+.| +...+..|...|.. ..+...+...+......+ +......
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhc
Confidence 4455555666667777777777777777654 44455555566554 556777777777776654 3333334
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 006396 419 FMNAYCE----EGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLC----KQWKLQEAVQLLEDMYVIGVTPDQITYNTII 490 (647)
Q Consensus 419 l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 490 (647)
+...+.. ..+.+.|...++...+.|. ......+...+. .......+...+..... ..+...+..+.
T Consensus 76 l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L~ 149 (265)
T d1ouva_ 76 LGNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTILG 149 (265)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHHH
T ss_pred cccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhhh
Confidence 4443332 4566777777777776652 222222222222 24456677777776665 34556666677
Q ss_pred HHHHh----cCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 006396 491 RSFCK----CKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNADCLLVSLQEHNISLTKVAYTTIIKA 562 (647)
Q Consensus 491 ~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~ 562 (647)
..|.. ..+...+..+++...+.| +......+...|.. ..++++|..+|.+..+.| ++..+..|+..
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~ 223 (265)
T d1ouva_ 150 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM 223 (265)
T ss_dssp HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred hhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHH
Confidence 66664 456778888888887744 56666667766665 568999999999998876 45677777777
Q ss_pred HHh----cCCHHHHHHHHHHHHHcC
Q 006396 563 HCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 563 ~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
|.. ..+.++|.++|+++.+.|
T Consensus 224 y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 224 QYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHcCCCCccCHHHHHHHHHHHHHCc
Confidence 765 348889999999998887
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.61 E-value=5.1e-08 Score=82.15 Aligned_cols=100 Identities=12% Similarity=-0.024 Sum_probs=91.3
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCC-CHHHHHH
Q 006396 445 GPTHVTYTVVIKGLCKQWKLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEP-TSATYNI 523 (647)
Q Consensus 445 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~ 523 (647)
.|+...+......+.+.|++++|+..|+++++.. |.+...|..+..+|.+.|++++|+..|+++++ +.| +...|..
T Consensus 1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~--l~p~~~~a~~~ 77 (201)
T d2c2la1 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFF 77 (201)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHH
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHH--hCCCcHHHHHH
Confidence 3778888888999999999999999999999875 67888999999999999999999999999998 566 4889999
Q ss_pred HHHHHhhcCChhhHHHHHHHHHHc
Q 006396 524 LIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 524 l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
++.+|...|++++|...|+++++.
T Consensus 78 lg~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 78 LGQCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999873
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.61 E-value=2.3e-07 Score=69.56 Aligned_cols=96 Identities=10% Similarity=0.043 Sum_probs=72.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCC---hhhHHHHHHHHHHcCCCCC-HHHHHHHHHH
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGD---LKNADCLLVSLQEHNISLT-KVAYTTIIKA 562 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~ 562 (647)
..+++.+...+++++|.+.|++.+..+ +.++.++..++.++.+.++ +++|+.+++++...+..|+ ..++..++.+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~ 81 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG 81 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence 456777778888888888888888843 3467888888888876554 4568888888876442233 2367888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcC
Q 006396 563 HCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 563 ~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|.+.|++++|++.|+++++..
T Consensus 82 y~~~g~~~~A~~~~~~aL~~~ 102 (122)
T d1nzna_ 82 NYRLKEYEKALKYVRGLLQTE 102 (122)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhhhHHHHHHHHHHHHhC
Confidence 888899999999999988876
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.60 E-value=1e-07 Score=71.50 Aligned_cols=98 Identities=9% Similarity=0.099 Sum_probs=81.5
Q ss_pred HHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCcccchhhhhHHHHh
Q 006396 522 NILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGD---VHKAMTFFCQMVEKGFEISIRDYTKSFFCM 598 (647)
Q Consensus 522 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (647)
..++..+...+++++|.+.|++++..+ +.+..++..++.++.+.++ +++|+.++++++..+
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~--------------- 66 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--------------- 66 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS---------------
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcc---------------
Confidence 456778888999999999999999965 5677899999999987654 457999999998765
Q ss_pred hhhCCCCCC-HHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 599 MLSNGFPPD-QEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 599 ~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
..|+ ..++..++.+|.+.|++++|++.++++++.+|.
T Consensus 67 -----~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~ 104 (122)
T d1nzna_ 67 -----SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQ 104 (122)
T ss_dssp -----CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred -----CCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcC
Confidence 1122 458899999999999999999999999997643
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.56 E-value=2e-06 Score=69.19 Aligned_cols=86 Identities=14% Similarity=-0.054 Sum_probs=70.8
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCM 598 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (647)
.+|+.+..+|.+.|++++|+..++++++.+ |.+..++..++.++...|++++|+..|+++++.+
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~--------------- 126 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--------------- 126 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC---------------
Confidence 456778888999999999999999999864 4467789999999999999999999999999987
Q ss_pred hhhCCCCCCHHHHHHHHHHHHcCCCHHH
Q 006396 599 MLSNGFPPDQEICEVMLIAFHQGGDLGS 626 (647)
Q Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 626 (647)
|.+..+...+..+..+.+...+
T Consensus 127 ------P~n~~~~~~l~~~~~~~~~~~~ 148 (170)
T d1p5qa1 127 ------PNNKAAKTQLAVCQQRIRRQLA 148 (170)
T ss_dssp ------SSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHHHHH
Confidence 6778888887777666554443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.53 E-value=3.6e-07 Score=67.63 Aligned_cols=94 Identities=11% Similarity=-0.101 Sum_probs=67.0
Q ss_pred ccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 006396 64 YTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGL 143 (647)
Q Consensus 64 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 143 (647)
..+..++..+.+.|++++|+..|++++...+. +..+|..++.++.+.|++++|...|+++++.. +.+..++..+...|
T Consensus 17 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y 94 (112)
T d1hxia_ 17 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 94 (112)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHH
Confidence 34455667777777777777777777765432 56677777777777777777777777777764 45566777777777
Q ss_pred HhcCCHHHHHHHHHHH
Q 006396 144 CIAGSMEEALEFTNDM 159 (647)
Q Consensus 144 ~~~~~~~~a~~~~~~~ 159 (647)
...|++++|.+.+++.
T Consensus 95 ~~~g~~~~A~~~l~~~ 110 (112)
T d1hxia_ 95 TNEHNANAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHH
Confidence 7777777777777765
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.48 E-value=3.3e-07 Score=69.85 Aligned_cols=107 Identities=12% Similarity=0.060 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhh
Q 006396 520 TYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMM 599 (647)
Q Consensus 520 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 599 (647)
.+..++..+...|++++|+..|.++++.+ +.+..++..++.+|...|++++|+..++++++...... ..
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~-~~--------- 74 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENR-ED--------- 74 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHST-TC---------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccH-HH---------
Confidence 34567888999999999999999999864 45677889999999999999999999999987540000 00
Q ss_pred hhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCC
Q 006396 600 LSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLLP 641 (647)
Q Consensus 600 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 641 (647)
...-..+|..++..+...|++++|++.+++.+.....|
T Consensus 75 ----~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~~~ 112 (128)
T d1elra_ 75 ----YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTP 112 (128)
T ss_dssp ----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH
T ss_pred ----HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCH
Confidence 00013577788899999999999999999988765544
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.46 E-value=1.4e-06 Score=70.24 Aligned_cols=65 Identities=8% Similarity=-0.111 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.++..++.+|.+.|++++|+..+++++..+ |.++.++..++.+|...|++++|...+++
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~---------------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~ 121 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELD---------------------SNNEKGLSRRGEAHLAVNDFELARADFQK 121 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcc---------------------ccchhhhHHHHHHHHHhhhHHHHHHHHHH
Confidence 357778899999999999999999999988 78899999999999999999999999999
Q ss_pred HHhCCC
Q 006396 634 MIKSGL 639 (647)
Q Consensus 634 ~~~~~~ 639 (647)
+++.+|
T Consensus 122 al~l~P 127 (170)
T d1p5qa1 122 VLQLYP 127 (170)
T ss_dssp HHHHCS
T ss_pred HHHhCC
Confidence 999765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.41 E-value=5.9e-06 Score=66.34 Aligned_cols=96 Identities=13% Similarity=-0.005 Sum_probs=78.1
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCM 598 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (647)
.+|..+..+|.+.|++++|+..++++++.+ +.+..+|...+.++...|++++|+..|++++...
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~--------------- 128 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN--------------- 128 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC---------------
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 456678888999999999999999999864 5677799999999999999999999999999987
Q ss_pred hhhCCCCCCHHHHHHHHHHHHcCCCHH-HHHHHHHHHHh
Q 006396 599 MLSNGFPPDQEICEVMLIAFHQGGDLG-SVFELAAVMIK 636 (647)
Q Consensus 599 ~~~~~~~~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 636 (647)
|.+..+...+..+..+.+... ...+.+.+|.+
T Consensus 129 ------P~n~~~~~~l~~~~~~~~~~~e~~kk~~~~~f~ 161 (168)
T d1kt1a1 129 ------PQNKAARLQIFMCQKKAKEHNERDRRTYANMFK 161 (168)
T ss_dssp ------TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 778888888887776665544 35566665553
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.37 E-value=1.1e-05 Score=63.46 Aligned_cols=79 Identities=13% Similarity=-0.010 Sum_probs=67.2
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCM 598 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 598 (647)
.++..++.+|.+.|++++|++.++++++.+ |.+..+|..++.++...|++++|+..|+++++.+
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~--------------- 131 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--------------- 131 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS---------------
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC---------------
Confidence 467788999999999999999999999864 4567799999999999999999999999999987
Q ss_pred hhhCCCCCCHHHHHHHHHHHH
Q 006396 599 MLSNGFPPDQEICEVMLIAFH 619 (647)
Q Consensus 599 ~~~~~~~~~~~~~~~l~~~~~ 619 (647)
|.+..+...+..+..
T Consensus 132 ------P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 132 ------PNNLDIRNSYELCVN 146 (153)
T ss_dssp ------TTCHHHHHHHHHHHH
T ss_pred ------CCCHHHHHHHHHHHH
Confidence 667777776655543
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.37 E-value=3.9e-06 Score=66.10 Aligned_cols=66 Identities=11% Similarity=-0.081 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.++..++.+|.+.|++++|+..++++++.+ |.+..+|..++.++...|++++|+..+++
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~---------------------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~ 126 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKID---------------------KNNVKALYKLGVANMYFGFLEEAKENLYK 126 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhcccccc---------------------chhhhhhHHhHHHHHHcCCHHHHHHHHHH
Confidence 467789999999999999999999999988 88899999999999999999999999999
Q ss_pred HHhCCCC
Q 006396 634 MIKSGLL 640 (647)
Q Consensus 634 ~~~~~~~ 640 (647)
+++.+|.
T Consensus 127 al~l~P~ 133 (153)
T d2fbna1 127 AASLNPN 133 (153)
T ss_dssp HHHHSTT
T ss_pred HHHhCCC
Confidence 9997653
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.32 E-value=5.4e-07 Score=87.28 Aligned_cols=98 Identities=8% Similarity=0.004 Sum_probs=43.6
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHH
Q 006396 482 DQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIK 561 (647)
Q Consensus 482 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~ 561 (647)
+...+..+...+.+.|+.+.|...+...... .| ..++..++..+...|++++|...|+++.+.. |.+...|+.++.
T Consensus 119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~~-~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~ 194 (497)
T d1ya0a1 119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--IC-QHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAI 194 (497)
T ss_dssp ------------------------CCHHHHH--HH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHH
T ss_pred hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--CH-HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHH
Confidence 3344555555566666666666655555431 11 2455556666666666666666666666642 333446666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHcC
Q 006396 562 AHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 562 ~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
.+...|+..+|+..|.+++...
T Consensus 195 ~~~~~~~~~~A~~~y~ral~~~ 216 (497)
T d1ya0a1 195 LASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHHcCCHHHHHHHHHHHHhCC
Confidence 6666666666666666666543
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.30 E-value=5e-06 Score=66.96 Aligned_cols=86 Identities=12% Similarity=-0.047 Sum_probs=71.8
Q ss_pred CHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHH
Q 006396 517 TSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFF 596 (647)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 596 (647)
....+..+..++.+.|++++|+..++++++.. +.+..+|..++.++...|++++|+..|+++++..
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~------------- 141 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA------------- 141 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-------------
Confidence 45677888999999999999999999999854 4566799999999999999999999999999987
Q ss_pred HhhhhCCCCCCHHHHHHHHHHHHcCCCH
Q 006396 597 CMMLSNGFPPDQEICEVMLIAFHQGGDL 624 (647)
Q Consensus 597 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 624 (647)
|.+..+...+..+..+....
T Consensus 142 --------p~n~~~~~~l~~~~~~l~~~ 161 (169)
T d1ihga1 142 --------PEDKAIQAELLKVKQKIKAQ 161 (169)
T ss_dssp --------TTCHHHHHHHHHHHHHHHHH
T ss_pred --------CCCHHHHHHHHHHHHHHHHH
Confidence 77788888777666544333
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=6.4e-06 Score=62.43 Aligned_cols=96 Identities=15% Similarity=0.091 Sum_probs=76.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCC-------HHHHHH
Q 006396 486 YNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLT-------KVAYTT 558 (647)
Q Consensus 486 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~ 558 (647)
+..+...+...|++++|+..|++.++.+ +.+...+..+..+|...|++++|+..++++++.. +.+ ..++..
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~ 84 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYAR 84 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHH
Confidence 4467778888999999999999999842 2358888999999999999999999999988632 111 236677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 559 IIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 559 l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
++..+...+++++|+..|++.+...
T Consensus 85 lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 8888889999999999999988754
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.21 E-value=9.4e-06 Score=65.40 Aligned_cols=122 Identities=13% Similarity=0.067 Sum_probs=87.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 006396 487 NTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE 566 (647)
Q Consensus 487 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 566 (647)
..........|++++|.+.|...+.. -++.. +......+-+...-..+... ....+..++.++...
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l--~rG~~--------l~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~ 80 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALRE--WRGPV--------LDDLRDFQFVEPFATALVED----KVLAHTAKAEAEIAC 80 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT--CCSST--------TGGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhh--Ccccc--------cccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence 34445667888999999999988873 22110 01111111122222222211 234678899999999
Q ss_pred CCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHH-----hCCCCC
Q 006396 567 GDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMI-----KSGLLP 641 (647)
Q Consensus 567 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~ 641 (647)
|++++|+..+++++... |-+...|..++.+|.+.|+.++|++.|+++. +.|+.|
T Consensus 81 g~~~~Al~~~~~al~~~---------------------P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P 139 (179)
T d2ff4a2 81 GRASAVIAELEALTFEH---------------------PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDP 139 (179)
T ss_dssp TCHHHHHHHHHHHHHHS---------------------TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCC
T ss_pred CCchHHHHHHHHHHHhC---------------------CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999988 8899999999999999999999999999974 468887
Q ss_pred CC
Q 006396 642 DK 643 (647)
Q Consensus 642 ~~ 643 (647)
..
T Consensus 140 ~~ 141 (179)
T d2ff4a2 140 GP 141 (179)
T ss_dssp CH
T ss_pred CH
Confidence 64
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.20 E-value=6.5e-06 Score=66.25 Aligned_cols=66 Identities=8% Similarity=-0.053 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 553 KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 553 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
...+..++.++.+.|++++|+..++++++.. |.++.+|..++.+|...|++++|++.++
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~---------------------p~~~~a~~~~g~~~~~l~~~~~A~~~~~ 135 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID---------------------PSNTKALYRRAQGWQGLKEYDQALADLK 135 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhh---------------------hhhhhHHHhHHHHHHHccCHHHHHHHHH
Confidence 4467888999999999999999999999987 8889999999999999999999999999
Q ss_pred HHHhCCC
Q 006396 633 VMIKSGL 639 (647)
Q Consensus 633 ~~~~~~~ 639 (647)
++++.+|
T Consensus 136 ~al~l~p 142 (169)
T d1ihga1 136 KAQEIAP 142 (169)
T ss_dssp HHHHHCT
T ss_pred HHHHhCC
Confidence 9999764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.18 E-value=0.0019 Score=57.12 Aligned_cols=121 Identities=14% Similarity=0.025 Sum_probs=74.5
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
+.|.++.|..+|..+.. |..++..+...+++..|.+.+.+.. +..+|..+...+.+......+
T Consensus 26 ~~~lye~A~~lY~~~~d---------~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l~~~~e~~la-- 88 (336)
T d1b89a_ 26 DEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFACVDGKEFRLA-- 88 (336)
T ss_dssp ---CTTTHHHHHHHTTC---------HHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHHHHTTCHHHH--
T ss_pred HCCCHHHHHHHHHhCCC---------HHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHHHhCcHHHHH--
Confidence 66777777777765542 6666777777777777777766542 455777777777766555432
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCChhhHHHHHHHHHhc
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDMGRHGVEPDAITYSILAKGFHLL 181 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 181 (647)
.+...+...++.....++..|-..|.+++...+++..... ...+...++.++..|++.
T Consensus 89 ---~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~ 146 (336)
T d1b89a_ 89 ---QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 146 (336)
T ss_dssp ---HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred ---HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence 1222222345555566777777777777777777776543 244566667777777664
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.16 E-value=8.8e-06 Score=65.27 Aligned_cols=65 Identities=8% Similarity=-0.101 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHH
Q 006396 554 VAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAV 633 (647)
Q Consensus 554 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 633 (647)
.++..++.+|.+.|++++|+..+++++..+ |.+..+|..++.++...|++++|.+.+++
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~---------------------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~ 123 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLD---------------------SANEKGLYRRGEAQLLMNEFESAKGDFEK 123 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcc---------------------cchHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 356678889999999999999999999988 88999999999999999999999999999
Q ss_pred HHhCCC
Q 006396 634 MIKSGL 639 (647)
Q Consensus 634 ~~~~~~ 639 (647)
+++.+|
T Consensus 124 al~l~P 129 (168)
T d1kt1a1 124 VLEVNP 129 (168)
T ss_dssp HHHSCT
T ss_pred HHHhCC
Confidence 999764
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.12 E-value=0.0025 Score=56.30 Aligned_cols=50 Identities=16% Similarity=0.222 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 006396 382 NSLIYGFCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLA 434 (647)
Q Consensus 382 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 434 (647)
..++..+.+.++.......++.....+ +....+++...|...++++.-..
T Consensus 252 ~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~ 301 (336)
T d1b89a_ 252 TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRT 301 (336)
T ss_dssp HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHH
Confidence 345555666667777777776665543 34567777778888777655333
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.99 E-value=2.6e-05 Score=60.40 Aligned_cols=114 Identities=16% Similarity=0.068 Sum_probs=69.3
Q ss_pred hcCCHHHHHHHHHHHHhCCCCC-CHHHHHHHHHHHhhc----------CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 006396 495 KCKDLRKAFQLLNQMWLHNLEP-TSATYNILIDGLCVN----------GDLKNADCLLVSLQEHNISLTKVAYTTIIKAH 563 (647)
Q Consensus 495 ~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~ 563 (647)
+.+.+++|...|+.+++ +.| ++..+..++.+|... +.+++|+..|+++++.+ |.+..+|..++.+|
T Consensus 9 r~~~fe~A~~~~e~al~--~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y 85 (145)
T d1zu2a1 9 RILLFEQIRQDAENTYK--SNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 85 (145)
T ss_dssp HHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHccHHHHHHHHHHHHh--hCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence 34445666666666655 233 355555555555432 33466777777777643 33455777777776
Q ss_pred HhcC-----------CHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHH
Q 006396 564 CAEG-----------DVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAA 632 (647)
Q Consensus 564 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 632 (647)
...| .+++|.+.|+++++.. |.+...+..+... ..|.+.+.
T Consensus 86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~---------------------P~~~~~~~~L~~~-------~ka~~~~~ 137 (145)
T d1zu2a1 86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQ---------------------PDNTHYLKSLEMT-------AKAPQLHA 137 (145)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHC---------------------TTCHHHHHHHHHH-------HTHHHHHH
T ss_pred HHcccchhhHHHHHHhHHHhhhhhhcccccC---------------------CCHHHHHHHHHHH-------HHHHHHHH
Confidence 6544 4688999999999877 5555555555444 35666666
Q ss_pred HHHhCCC
Q 006396 633 VMIKSGL 639 (647)
Q Consensus 633 ~~~~~~~ 639 (647)
++.+.|+
T Consensus 138 e~~k~~~ 144 (145)
T d1zu2a1 138 EAYKQGL 144 (145)
T ss_dssp HHHHSSS
T ss_pred HHHHHhc
Confidence 6666553
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.98 E-value=6.5e-05 Score=60.33 Aligned_cols=59 Identities=12% Similarity=-0.022 Sum_probs=27.5
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 006396 100 SLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFTNDM 159 (647)
Q Consensus 100 ~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 159 (647)
.+..++..+.+.|++++|...++++++.. +-+...|..++.++.+.|+..+|++.|+++
T Consensus 69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~ 127 (179)
T d2ff4a2 69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV 127 (179)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 34444444444444444444444444443 333444444444444444444444444443
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.80 E-value=1.7e-05 Score=61.51 Aligned_cols=91 Identities=10% Similarity=-0.098 Sum_probs=75.3
Q ss_pred HhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHHcCCcccchhhhhHHHH
Q 006396 528 LCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAE----------GDVHKAMTFFCQMVEKGFEISIRDYTKSFFC 597 (647)
Q Consensus 528 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 597 (647)
|.+.+.+++|+..|+++++.. |.+..++..++.++... +.+++|+..|+++++.+
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-------------- 71 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-------------- 71 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred HHHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc--------------
Confidence 445677999999999999964 55677898999888754 45578999999999988
Q ss_pred hhhhCCCCCCHHHHHHHHHHHHcCCC-----------HHHHHHHHHHHHhCCCC
Q 006396 598 MMLSNGFPPDQEICEVMLIAFHQGGD-----------LGSVFELAAVMIKSGLL 640 (647)
Q Consensus 598 ~~~~~~~~~~~~~~~~l~~~~~~~g~-----------~~~A~~~~~~~~~~~~~ 640 (647)
|.+..+|..++.+|...|+ +++|.+.++++++.+|.
T Consensus 72 -------P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~ 118 (145)
T d1zu2a1 72 -------PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPD 118 (145)
T ss_dssp -------TTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred -------chhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCC
Confidence 8889999999999987653 68899999999986643
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.9e-05 Score=76.06 Aligned_cols=203 Identities=11% Similarity=-0.069 Sum_probs=104.4
Q ss_pred hhhHHHhcCChhhHHHHHHHHHhCCCCcCHHHH---HHHHHhcCChhHHHHHHHHHHhCCCCCCcccHH--HHHHHHHhc
Q 006396 2 LAFVYSRTGMVHDAVFVIAKMKELDLKVSIQTY---NSLLYNLRHTDIMWDLYDDIKVSETPRNVYTNS--IVIDGLCQQ 76 (647)
Q Consensus 2 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~---~~ll~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~ 76 (647)
|+.+|..+|++++| |++++..+ |+-... ...+-+ ..+..+...++........++..... .........
T Consensus 26 la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw~-~~y~~~ie~~r~~~k~~~~~~~~~~~~~~~~~l~~a~ 99 (497)
T d1ya0a1 26 PAEVWTSRQALQDL---YQKMLVTD--LEYALDKKVEQDLWN-HAFKNQITTLQGQAKNRANPNRSEVQANLSLFLEAAS 99 (497)
T ss_dssp SSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTHHHHHHH-HHTHHHHHHHHHHHSCSSCTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhHHHHHHH-HHHHHHHHHHHHhcccccCccHHHHHHHHHHHHHHHH
Confidence 56778888888876 78887664 221111 111111 13556666666665433222222111 112223346
Q ss_pred CChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 006396 77 SRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEFT 156 (647)
Q Consensus 77 g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 156 (647)
+.++.|+..+....+..+ ++...+..+...+.+.|+.+.|...++...+.. ...++..+...+...+++++|...|
T Consensus 100 ~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 100 GFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHTC--------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 677778777776655432 244566777777777888888877776665431 1245666777777788888888888
Q ss_pred HHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhcCCCCCcchHHHHHHHHHhc
Q 006396 157 NDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIKGSDPDIVTYTVLICGYCQI 216 (647)
Q Consensus 157 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 216 (647)
++..+.. |.+...|+.|...+...|+..+|...|.+.+... .|-..++..|...+.+.
T Consensus 176 ~~A~~l~-P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~ 233 (497)
T d1ya0a1 176 RHAAQLV-PSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHC-TTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHH
T ss_pred HHHHHHC-CCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHh
Confidence 8877752 4456778888888888888888888888777653 34566677777666543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.79 E-value=1.9e-05 Score=67.99 Aligned_cols=123 Identities=11% Similarity=-0.037 Sum_probs=59.3
Q ss_pred HHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 73 LCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKGLFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEA 152 (647)
Q Consensus 73 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 152 (647)
.++.|++++|+..+++.++..|. +...+..++..++..|++++|...++.+.+.. +.+...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~-P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF-PEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHhccccHHH
Confidence 34566666666666666665432 55666666666666666666666666666552 22233333333333222222222
Q ss_pred HHHHHHHhhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHhc
Q 006396 153 LEFTNDMGRHGVEPDAITYSILAKGFHLLSQISGAWKVIQKLLIK 197 (647)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 197 (647)
..-.......+.+++...+...+..+...|+.++|.+.++++.+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 111111111111122222333344455566666666666665544
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.79 E-value=1.4e-05 Score=56.45 Aligned_cols=76 Identities=16% Similarity=0.049 Sum_probs=59.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHH
Q 006396 552 TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELA 631 (647)
Q Consensus 552 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 631 (647)
+...+..++..+.+.|++++|+..|+++++..-.. ....+....++..++.++.+.|++++|++.+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~--------------~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y 69 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEG--------------EISTIDKVSVLDYLSYAVYQQGDLDKALLLT 69 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT--------------CCCSSCHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhh--------------hccCccHHHHHHHHhhHHHhcCChHHHHHHH
Confidence 44556788999999999999999999998753000 0001223688999999999999999999999
Q ss_pred HHHHhCCCCC
Q 006396 632 AVMIKSGLLP 641 (647)
Q Consensus 632 ~~~~~~~~~~ 641 (647)
+++++.+|.-
T Consensus 70 ~~aL~l~P~~ 79 (95)
T d1tjca_ 70 KKLLELDPEH 79 (95)
T ss_dssp HHHHHHCTTC
T ss_pred HHHHHhCcCC
Confidence 9999977543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.79 E-value=1.6e-05 Score=68.46 Aligned_cols=124 Identities=16% Similarity=0.050 Sum_probs=72.4
Q ss_pred HhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHH
Q 006396 494 CKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEGDVHKA 572 (647)
Q Consensus 494 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A 572 (647)
.+.|++++|+..+++.++.. +.+...+..++..|+..|++++|...++++.+. .|+. ..+..+...+...+..+++
T Consensus 7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence 45677888888888777732 235777777888888888888888888887774 3433 3444444444333332222
Q ss_pred HHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCC
Q 006396 573 MTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQGGDLGSVFELAAVMIKSGLL 640 (647)
Q Consensus 573 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 640 (647)
..........+ -+++...+...+..+.+.|+.++|.+.++++.+..+.
T Consensus 84 ~~~~~~~~~~~--------------------~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~ 131 (264)
T d1zbpa1 84 AQGAATAKVLG--------------------ENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQE 131 (264)
T ss_dssp TTSCCCEECCC--------------------SCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC
T ss_pred HHHhhhhhccc--------------------CchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC
Confidence 11111000000 1223344455567777778888888888887775543
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.71 E-value=5.8e-05 Score=59.43 Aligned_cols=104 Identities=10% Similarity=-0.022 Sum_probs=74.1
Q ss_pred HHHHHH--HHHHhhcCChhhHHHHHHHHHHc--CCCC---------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCc
Q 006396 519 ATYNIL--IDGLCVNGDLKNADCLLVSLQEH--NISL---------TKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFE 585 (647)
Q Consensus 519 ~~~~~l--~~~~~~~g~~~~A~~~~~~~~~~--~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 585 (647)
..|..+ +..+...|++++|+..|++.++. ..+. ...+|..++.+|...|++++|+..+++++...-.
T Consensus 8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~ 87 (156)
T d2hr2a1 8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 87 (156)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence 344445 44566778888888888888862 1111 1346888999999999999999999998863200
Q ss_pred ccchhhhhHHHHhhhhCCCCC-----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 586 ISIRDYTKSFFCMMLSNGFPP-----DQEICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 586 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
. ....+ ...++..++.+|...|++++|.+.++++++.
T Consensus 88 ~---------------~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 88 R---------------GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp H---------------CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred c---------------ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 0 00111 1346788999999999999999999998864
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.66 E-value=0.00021 Score=50.19 Aligned_cols=77 Identities=13% Similarity=0.085 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhh
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHN-----ISLT-KVAYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYT 592 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 592 (647)
.-+-.++..+.+.|++++|..+|+++++.. ..++ ..++..++.++.+.|++++|+..++++++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~--------- 76 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD--------- 76 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC---------
Confidence 334467888888899999988888887531 1222 3478889999999999999999999999887
Q ss_pred hHHHHhhhhCCCCCCHHHHHHHHH
Q 006396 593 KSFFCMMLSNGFPPDQEICEVMLI 616 (647)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~l~~ 616 (647)
|.+..++..+..
T Consensus 77 ------------P~~~~a~~Nl~~ 88 (95)
T d1tjca_ 77 ------------PEHQRANGNLKY 88 (95)
T ss_dssp ------------TTCHHHHHHHHH
T ss_pred ------------cCCHHHHHHHHH
Confidence 667777776643
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.54 E-value=0.00071 Score=52.87 Aligned_cols=93 Identities=14% Similarity=-0.021 Sum_probs=64.8
Q ss_pred HHHHHhcCCHHHHHHHHHHHHhC--CCCC---------CHHHHHHHHHHHhhcCChhhHHHHHHHHHHc-----CCCCC-
Q 006396 490 IRSFCKCKDLRKAFQLLNQMWLH--NLEP---------TSATYNILIDGLCVNGDLKNADCLLVSLQEH-----NISLT- 552 (647)
Q Consensus 490 ~~~~~~~~~~~~A~~~~~~~~~~--~~~p---------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~- 552 (647)
...+...|++++|+..|++.++. ..+. ...+|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 34455667777777777777651 1110 1356778888888889999888888887742 11122
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 006396 553 ----KVAYTTIIKAHCAEGDVHKAMTFFCQMVEK 582 (647)
Q Consensus 553 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 582 (647)
..++..++.+|...|++++|+..|+++++.
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l 129 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM 129 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 125677889999999999999999998864
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.002 Score=48.44 Aligned_cols=81 Identities=12% Similarity=0.034 Sum_probs=41.9
Q ss_pred CChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCC
Q 006396 532 GDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPD 607 (647)
Q Consensus 532 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 607 (647)
.+.++|.+++++..+.| ++.....+...|.. ..+.++|.++|+++.+.+ +
T Consensus 37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g-----------------------~ 90 (133)
T d1klxa_ 37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN-----------------------D 90 (133)
T ss_dssp SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-----------------------C
T ss_pred cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC-----------------------c
Confidence 45555555555555543 33344444444433 335566666666665544 3
Q ss_pred HHHHHHHHHHHHc----CCCHHHHHHHHHHHHhCC
Q 006396 608 QEICEVMLIAFHQ----GGDLGSVFELAAVMIKSG 638 (647)
Q Consensus 608 ~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 638 (647)
+.....|+..|.. ..+.++|.++++++.+.|
T Consensus 91 ~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 91 QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 3444555555544 235666666666665554
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.10 E-value=0.0098 Score=44.47 Aligned_cols=110 Identities=16% Similarity=0.098 Sum_probs=69.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhh----cCChhhHH
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCV----NGDLKNAD 538 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~ 538 (647)
++++|+..|++..+.|. + .....+. .....+.++|.+++++..+.| ++.....|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 45666667766666552 2 1122222 223457778888888777755 44555556666553 45678888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 006396 539 CLLVSLQEHNISLTKVAYTTIIKAHCA----EGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 539 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~ 583 (647)
++|++..+.| ++.....+...|.. ..+.++|.++|+++.+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 8888888765 34555566666655 457888888888888776
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.69 E-value=0.0086 Score=42.97 Aligned_cols=29 Identities=10% Similarity=0.087 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHhC
Q 006396 609 EICEVMLIAFHQGGDLGSVFELAAVMIKS 637 (647)
Q Consensus 609 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 637 (647)
+.+..++-+|.+.|++++|++.++++++.
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 44455555555555555555555555553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.12 E-value=0.21 Score=35.56 Aligned_cols=67 Identities=12% Similarity=0.047 Sum_probs=43.5
Q ss_pred CCHHHHHHHHHHHhhcC---ChhhHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 516 PTSATYNILIDGLCVNG---DLKNADCLLVSLQEHNISLTK-VAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 516 p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
|...+--.+++++.++. +.++++.+++++.+.+ +.+. ..+..++-+|.+.|++++|+++++++++..
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 44555555666666554 4456777777777642 2232 466677777777788888888777777765
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.11 E-value=0.32 Score=34.20 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 006396 519 ATYNILIDGLCVNGDLKNADCLLVSLQEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMVEKG 583 (647)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 583 (647)
..++.-++.+..+|+-++-.++++.+.+.+ ++++.....++.+|-+.|...++-+++.++.+.|
T Consensus 87 e~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G 150 (161)
T d1wy6a1 87 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKG 150 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence 333444444555555555555555544432 4445555555555555555555555555555444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.01 E-value=0.35 Score=34.03 Aligned_cols=141 Identities=14% Similarity=0.139 Sum_probs=94.1
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 388 FCKNGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 388 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
+...|..++..+++.+.... .+..-+|-++.-....-+-+....+++.+-+. + | ....++....
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--D----------ls~C~Nlk~v 75 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--D----------LDKCQNLKSV 75 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--C----------GGGCSCTHHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--C----------chhhhcHHHH
Confidence 34467777777777776652 34555666665555556666666655554332 0 1 0123333333
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
...+-.+ ..+.......+......|.-+.-.+++..+.+. -+|++.....+..+|.+.|...++-+++.++-+.
T Consensus 76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~ 149 (161)
T d1wy6a1 76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKK 149 (161)
T ss_dssp HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHH
Confidence 3333222 234455666777888899999999999998874 4888999999999999999999999999999998
Q ss_pred CCC
Q 006396 548 NIS 550 (647)
Q Consensus 548 ~~~ 550 (647)
|++
T Consensus 150 G~K 152 (161)
T d1wy6a1 150 GEK 152 (161)
T ss_dssp TCH
T ss_pred hHH
Confidence 853
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=93.98 E-value=2.2 Score=39.00 Aligned_cols=203 Identities=5% Similarity=-0.060 Sum_probs=108.2
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 006396 392 GKVADARRLLDTIKLHGLEPSAVTYTTFMNAY----CEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEA 467 (647)
Q Consensus 392 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 467 (647)
.+.+.+..++....... ..+......+-... ...+..+.+...+......+ .+.......+......+++..+
T Consensus 228 ~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~ 304 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGL 304 (450)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHH
Confidence 46667777776665432 22222222222222 23355566666666665543 2333333344444556777777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHHc
Q 006396 468 VQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQEH 547 (647)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 547 (647)
...+..+.... .....-.--+..++...|+.+.|...|..+.. .++ -|..|.. .+.|..-. +...
T Consensus 305 ~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~---~~~--fYG~LAa--~~Lg~~~~-------~~~~ 369 (450)
T d1qsaa1 305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQ---QRG--FYPMVAA--QRIGEEYE-------LKID 369 (450)
T ss_dssp HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT---SCS--HHHHHHH--HHTTCCCC-------CCCC
T ss_pred HHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc---CCC--hHHHHHH--HHcCCCCC-------CCcC
Confidence 77766653211 11222223455666777777777777777754 233 2222211 11221100 0000
Q ss_pred CCCC--CHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCcccchhhhhHHHHhhhhCCCCCCHHHHHHHHHHHHcC
Q 006396 548 NISL--TKV----AYTTIIKAHCAEGDVHKAMTFFCQMVEKGFEISIRDYTKSFFCMMLSNGFPPDQEICEVMLIAFHQG 621 (647)
Q Consensus 548 ~~~~--~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 621 (647)
..+. ... .-...+..+...|+...|...+..+... .+..-...++....+.
T Consensus 370 ~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~-----------------------~~~~~~~~la~lA~~~ 426 (450)
T d1qsaa1 370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-----------------------KSKTEQAQLARYAFNN 426 (450)
T ss_dssp CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-----------------------CCHHHHHHHHHHHHHT
T ss_pred CCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC-----------------------CCHHHHHHHHHHHHHC
Confidence 0000 000 1123456677889999999999888653 2456677888999999
Q ss_pred CCHHHHHHHHHHHH
Q 006396 622 GDLGSVFELAAVMI 635 (647)
Q Consensus 622 g~~~~A~~~~~~~~ 635 (647)
|.++.|+....++.
T Consensus 427 g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 427 QWWDLSVQATIAGK 440 (450)
T ss_dssp TCHHHHHHHHHHTT
T ss_pred CChhHHHHHHHHHH
Confidence 99999998877653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.22 E-value=0.85 Score=30.30 Aligned_cols=49 Identities=14% Similarity=0.110 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhhcCChhhHHHHHHHHHH
Q 006396 498 DLRKAFQLLNQMWLHNLEPTSATYNILIDGLCVNGDLKNADCLLVSLQE 546 (647)
Q Consensus 498 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 546 (647)
|.=+..+-++.+...++-|++.+..+-+++|.+.+++..|.++++.+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444555555555555556666666666666666666666666655554
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.91 E-value=6.9 Score=35.55 Aligned_cols=170 Identities=9% Similarity=0.002 Sum_probs=88.3
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 391 NGKVADARRLLDTIKLHGLEPSAVTYTTFMNAYCEEGNIQRLLALLQEMETKAIGPTHVTYTVVIKGLCKQWKLQEAVQL 470 (647)
Q Consensus 391 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 470 (647)
.+..+.+...+......+ .+.......+......+++..+...++.|.... .....-..-+.+++...|+.+.|...
T Consensus 265 ~~~~~~a~~~~~~~~~~~--~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~~ 341 (450)
T d1qsaa1 265 NDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEI 341 (450)
T ss_dssp TTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCchHHHHHHHHhhcccc--cchHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHHH
Confidence 344555655555555442 233333334444455667777777776664321 11223334455666777777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhCCC--CCC-HHH---HHHHHHHHhhcCChhhHHHHHHHH
Q 006396 471 LEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWLHNL--EPT-SAT---YNILIDGLCVNGDLKNADCLLVSL 544 (647)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~-~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 544 (647)
|..+.. .++ |-..+.+- +.|..-. +..... .+. ... -...+..+...|....|...+..+
T Consensus 342 ~~~~a~---~~~---fYG~LAa~-~Lg~~~~-------~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l 407 (450)
T d1qsaa1 342 LHQLMQ---QRG---FYPMVAAQ-RIGEEYE-------LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANL 407 (450)
T ss_dssp HHHHHT---SCS---HHHHHHHH-HTTCCCC-------CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhc---CCC---hHHHHHHH-HcCCCCC-------CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHH
Confidence 776653 222 22222211 1111000 000000 000 000 012345566778888888888877
Q ss_pred HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 006396 545 QEHNISLTKVAYTTIIKAHCAEGDVHKAMTFFCQMV 580 (647)
Q Consensus 545 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 580 (647)
... .+......++....+.|.++.|+....++.
T Consensus 408 ~~~---~~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 408 VKS---KSKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HTT---CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HhC---CCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 653 245566677777888888888887776664
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.92 E-value=2.1 Score=28.35 Aligned_cols=49 Identities=12% Similarity=0.167 Sum_probs=32.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 006396 463 KLQEAVQLLEDMYVIGVTPDQITYNTIIRSFCKCKDLRKAFQLLNQMWL 511 (647)
Q Consensus 463 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~ 511 (647)
+.=+..+-+..+....+-|++.+..+.+.+|.+.+|+..|.++++.+..
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~ 69 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 69 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3445555555555556667777777777777777777777777776664
|
| >d1bpoa1 a.118.1.4 (A:331-487) Clathrin heavy-chain linker domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy-chain linker domain domain: Clathrin heavy-chain linker domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.52 E-value=7.8 Score=28.24 Aligned_cols=111 Identities=11% Similarity=0.069 Sum_probs=66.1
Q ss_pred hcCChhHHHHHHHHHHhCCCCCCcccHHHHHHHHHhcCChhHHHHHHHHhhcCCCCcCHHhHHHHHHHHHhcCChhhHHH
Q 006396 40 NLRHTDIMWDLYDDIKVSETPRNVYTNSIVIDGLCQQSRLQDAILFLQETAGKEFGPSVVSLNAIMSRYCKLGFAEVAKG 119 (647)
Q Consensus 40 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~ 119 (647)
..++++.|.++ +.+.+.|..-..|..-...++..|++.+|..+.....+. +-.++.+....-..-...|...--+.
T Consensus 11 ~l~n~~la~~l---A~r~~LpGAd~l~~~~F~~lf~~g~y~eAA~~aA~sP~g-iLRt~~Ti~rFk~~~~~pGq~spLL~ 86 (157)
T d1bpoa1 11 VLQNPDLALRM---AVRNNLAGAEELFARKFNALFAQGNYSEAAKVAANAPKG-ILRTPDTIRRFQSVPAQPGQTSPLLQ 86 (157)
T ss_dssp TTCCHHHHHHH---HHHTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSGGG-SSCSHHHHHHHTTSCCCTTSCCHHHH
T ss_pred ccCCHHHHHHH---HHhcCCCChHHHHHHHHHHHHHcCCHHHHHHHHHhCCcc-cccCHHHHHHHHcCCCCCCCCCHHHH
Confidence 45667666655 444566555556777777888888888888887766542 22355555544444344566666677
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 006396 120 LFCLMLKYGLHPDAFSYNILIHGLCIAGSMEEALEF 155 (647)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 155 (647)
+|..+.+.| ..|..--.-+++.-...|+.+-..++
T Consensus 87 YF~~Ll~~~-~LN~~ESlEl~r~vL~q~r~~lve~W 121 (157)
T d1bpoa1 87 YFGILLDQG-QLNKYESLELCRPVLQQGRKQLLEKW 121 (157)
T ss_dssp HHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHhcC-CCchHHhHHHHHHHHhcCcHHHHHHH
Confidence 777777665 44444333444444455555544444
|